Query 010868
Match_columns 498
No_of_seqs 358 out of 2630
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10880 adenine DNA glycosyla 100.0 4.9E-76 1.1E-80 604.3 34.2 340 81-472 4-345 (350)
2 COG1194 MutY A/G-specific DNA 100.0 4.5E-74 9.8E-79 577.8 26.7 334 78-472 6-341 (342)
3 TIGR01084 mutY A/G-specific ad 100.0 1.6E-66 3.4E-71 519.7 28.7 259 83-368 2-262 (275)
4 KOG2457 A/G-specific adenine D 100.0 4.7E-65 1E-69 508.3 17.8 372 70-457 80-490 (555)
5 PRK13910 DNA glycosylase MutY; 100.0 1.1E-62 2.3E-67 493.7 28.3 282 125-474 1-284 (289)
6 COG0177 Nth Predicted EndoIII- 100.0 1.2E-48 2.6E-53 373.1 20.2 203 78-298 4-208 (211)
7 PRK10702 endonuclease III; Pro 100.0 9.9E-47 2.1E-51 364.1 22.0 202 78-297 4-207 (211)
8 TIGR01083 nth endonuclease III 100.0 3.9E-40 8.5E-45 314.3 20.7 187 80-284 3-191 (191)
9 PRK13913 3-methyladenine DNA g 100.0 1E-33 2.2E-38 273.7 20.2 182 82-279 6-216 (218)
10 KOG1921 Endonuclease III [Repl 100.0 9E-34 2E-38 270.2 14.5 210 78-297 46-261 (286)
11 COG2231 Uncharacterized protei 100.0 3.7E-30 8.1E-35 241.1 16.5 200 78-297 6-214 (215)
12 smart00478 ENDO3c endonuclease 100.0 2.1E-28 4.5E-33 224.0 14.9 147 125-275 1-149 (149)
13 cd00056 ENDO3c endonuclease II 100.0 9E-28 2E-32 221.7 15.9 153 117-273 1-158 (158)
14 PRK01229 N-glycosylase/DNA lya 99.9 5.4E-24 1.2E-28 204.3 17.5 121 113-239 34-164 (208)
15 TIGR00588 ogg 8-oxoguanine DNA 99.9 8.8E-24 1.9E-28 215.7 16.0 154 114-272 117-302 (310)
16 TIGR00586 mutt mutator mutT pr 99.9 4.7E-21 1E-25 169.3 13.1 115 342-472 13-127 (128)
17 PRK10546 pyrimidine (deoxy)nuc 99.9 8.1E-21 1.8E-25 169.9 13.8 120 342-477 12-131 (135)
18 PF14815 NUDIX_4: NUDIX domain 99.8 4.3E-21 9.3E-26 167.7 9.7 109 342-469 6-114 (114)
19 PRK10776 nucleoside triphospha 99.8 2E-20 4.4E-25 164.9 13.6 116 342-473 13-128 (129)
20 TIGR03252 uncharacterized HhH- 99.8 1.9E-20 4.1E-25 174.6 12.6 103 113-215 15-136 (177)
21 cd03431 DNA_Glycosylase_C DNA 99.8 2.9E-20 6.2E-25 161.4 12.1 106 343-470 12-117 (118)
22 COG0122 AlkA 3-methyladenine D 99.8 1.7E-18 3.8E-23 174.5 12.8 138 113-258 102-260 (285)
23 PRK10308 3-methyl-adenine DNA 99.8 2.1E-18 4.5E-23 174.0 13.3 138 114-266 111-270 (283)
24 cd03425 MutT_pyrophosphohydrol 99.7 9.1E-18 2E-22 146.1 12.0 115 342-472 10-124 (124)
25 PRK08999 hypothetical protein; 99.7 9.4E-18 2E-22 171.4 12.9 124 342-481 14-137 (312)
26 PF00730 HhH-GPD: HhH-GPD supe 99.7 1.5E-16 3.2E-21 137.7 10.9 104 121-258 1-107 (108)
27 KOG2875 8-oxoguanine DNA glyco 99.7 7.1E-17 1.5E-21 157.5 9.2 121 110-233 111-258 (323)
28 PRK15472 nucleoside triphospha 99.6 2.1E-14 4.5E-19 129.9 11.2 119 342-470 12-137 (141)
29 KOG1918 3-methyladenine DNA gl 99.5 2.3E-14 5E-19 135.8 8.3 122 113-240 72-213 (254)
30 PRK15434 GDP-mannose mannosyl 99.5 8E-14 1.7E-18 129.5 11.3 116 342-470 26-150 (159)
31 cd04676 Nudix_Hydrolase_17 Mem 99.5 8E-14 1.7E-18 122.4 10.5 109 342-469 11-128 (129)
32 cd03427 MTH1 MutT homolog-1 (M 99.5 1.9E-13 4E-18 122.5 10.5 116 343-474 10-127 (137)
33 cd04696 Nudix_Hydrolase_37 Mem 99.5 2.5E-13 5.4E-18 120.1 11.1 110 342-469 11-125 (125)
34 cd04669 Nudix_Hydrolase_11 Mem 99.5 1.8E-13 3.9E-18 120.9 9.8 105 342-462 9-118 (121)
35 cd04699 Nudix_Hydrolase_39 Mem 99.4 7E-13 1.5E-17 116.9 9.3 105 342-461 10-117 (129)
36 cd03430 GDPMH GDP-mannose glyc 99.4 1.4E-12 3E-17 119.0 11.5 103 342-459 21-133 (144)
37 cd04673 Nudix_Hydrolase_15 Mem 99.4 5.7E-13 1.2E-17 116.4 8.6 106 344-465 10-121 (122)
38 PRK09438 nudB dihydroneopterin 99.4 6.3E-13 1.4E-17 121.2 9.1 121 342-475 16-146 (148)
39 cd04691 Nudix_Hydrolase_32 Mem 99.4 1E-12 2.2E-17 115.3 9.5 97 344-457 10-107 (117)
40 cd04684 Nudix_Hydrolase_25 Con 99.4 1.6E-12 3.5E-17 114.3 10.7 112 344-468 10-127 (128)
41 cd04695 Nudix_Hydrolase_36 Mem 99.4 2.4E-12 5.3E-17 115.0 10.8 117 342-474 11-130 (131)
42 cd04682 Nudix_Hydrolase_23 Mem 99.4 1.4E-12 3E-17 115.0 8.7 106 343-461 10-117 (122)
43 cd04679 Nudix_Hydrolase_20 Mem 99.4 4.1E-12 9E-17 112.2 11.8 111 342-467 11-123 (125)
44 cd03673 Ap6A_hydrolase Diadeno 99.4 2.6E-12 5.7E-17 113.5 9.7 111 344-471 15-129 (131)
45 cd04681 Nudix_Hydrolase_22 Mem 99.4 2.8E-12 6.1E-17 113.8 9.7 112 342-469 10-127 (130)
46 cd04683 Nudix_Hydrolase_24 Mem 99.4 4.8E-12 1E-16 110.8 10.8 105 343-458 9-114 (120)
47 cd02883 Nudix_Hydrolase Nudix 99.4 2.2E-12 4.7E-17 111.0 8.5 112 342-468 9-122 (123)
48 PLN02325 nudix hydrolase 99.4 8E-12 1.7E-16 114.1 12.3 115 343-470 18-136 (144)
49 cd04670 Nudix_Hydrolase_12 Mem 99.3 6.2E-12 1.3E-16 111.4 10.4 112 342-468 11-123 (127)
50 cd04664 Nudix_Hydrolase_7 Memb 99.3 4.2E-12 9.1E-17 112.8 8.9 109 344-468 14-128 (129)
51 cd03675 Nudix_Hydrolase_2 Cont 99.3 1.5E-11 3.2E-16 109.8 11.5 118 342-474 8-130 (134)
52 cd04687 Nudix_Hydrolase_28 Mem 99.3 1E-11 2.2E-16 110.2 10.1 109 343-463 10-126 (128)
53 cd03426 CoAse Coenzyme A pyrop 99.3 4.3E-12 9.4E-17 117.3 7.7 104 344-460 15-120 (157)
54 cd04678 Nudix_Hydrolase_19 Mem 99.3 3.6E-11 7.8E-16 106.7 13.1 105 342-458 11-117 (129)
55 cd04688 Nudix_Hydrolase_29 Mem 99.3 1.1E-11 2.3E-16 109.7 9.6 106 344-464 11-124 (126)
56 PRK15393 NUDIX hydrolase YfcD; 99.3 1.7E-11 3.6E-16 116.2 11.2 118 342-474 46-167 (180)
57 cd04667 Nudix_Hydrolase_10 Mem 99.3 1.4E-11 3E-16 107.0 9.5 103 343-468 9-111 (112)
58 cd04690 Nudix_Hydrolase_31 Mem 99.3 1E-11 2.2E-16 108.2 8.7 103 342-464 9-116 (118)
59 cd04661 MRP_L46 Mitochondrial 99.3 8E-12 1.7E-16 112.2 7.9 104 342-458 10-120 (132)
60 cd04671 Nudix_Hydrolase_13 Mem 99.3 2.8E-11 6.1E-16 107.5 10.7 108 342-465 9-116 (123)
61 cd04697 Nudix_Hydrolase_38 Mem 99.3 1.7E-11 3.6E-16 109.0 8.7 102 342-458 9-112 (126)
62 cd04511 Nudix_Hydrolase_4 Memb 99.3 2.5E-11 5.4E-16 108.3 9.9 101 343-461 22-124 (130)
63 cd03671 Ap4A_hydrolase_plant_l 99.3 3.5E-11 7.5E-16 109.8 10.9 118 342-473 12-145 (147)
64 cd04680 Nudix_Hydrolase_21 Mem 99.2 3.6E-11 7.8E-16 104.8 9.9 109 342-468 9-117 (120)
65 cd03674 Nudix_Hydrolase_1 Memb 99.2 9.7E-11 2.1E-15 105.8 12.2 112 342-471 11-136 (138)
66 PF00293 NUDIX: NUDIX domain; 99.2 2.4E-11 5.2E-16 107.2 7.5 118 342-471 11-132 (134)
67 cd04694 Nudix_Hydrolase_35 Mem 99.2 3.3E-11 7E-16 110.1 8.5 109 342-457 10-130 (143)
68 cd04700 DR1025_like DR1025 fro 99.2 6.5E-11 1.4E-15 107.6 10.0 103 342-458 22-125 (142)
69 TIGR02150 IPP_isom_1 isopenten 99.2 6.3E-11 1.4E-15 109.8 8.4 101 342-457 36-141 (158)
70 cd04689 Nudix_Hydrolase_30 Mem 99.2 1.7E-10 3.7E-15 101.9 10.5 102 343-459 10-115 (125)
71 cd04693 Nudix_Hydrolase_34 Mem 99.2 6.7E-11 1.5E-15 104.8 7.8 102 342-457 9-112 (127)
72 cd04672 Nudix_Hydrolase_14 Mem 99.2 9.8E-11 2.1E-15 103.3 8.7 103 344-465 12-119 (123)
73 cd03424 ADPRase_NUDT5 ADP-ribo 99.2 9.4E-11 2E-15 105.1 8.3 104 342-457 11-114 (137)
74 cd03428 Ap4A_hydrolase_human_l 99.1 1.9E-10 4.1E-15 101.9 9.2 108 344-470 16-127 (130)
75 cd02885 IPP_Isomerase Isopente 99.1 2.7E-10 5.8E-15 106.2 9.2 102 342-458 39-148 (165)
76 cd04692 Nudix_Hydrolase_33 Mem 99.1 2.7E-10 5.8E-15 103.5 8.9 102 345-456 17-125 (144)
77 cd03429 NADH_pyrophosphatase N 99.1 2.2E-10 4.9E-15 102.6 8.2 115 342-474 9-127 (131)
78 cd04677 Nudix_Hydrolase_18 Mem 99.1 3.4E-10 7.3E-15 100.5 9.2 102 342-461 16-125 (132)
79 cd03672 Dcp2p mRNA decapping e 99.1 6.8E-10 1.5E-14 101.5 10.7 98 344-458 13-111 (145)
80 PRK00714 RNA pyrophosphohydrol 99.1 4.9E-10 1.1E-14 103.7 9.5 121 342-476 17-152 (156)
81 cd04686 Nudix_Hydrolase_27 Mem 99.0 1E-09 2.2E-14 98.3 9.1 103 343-457 9-118 (131)
82 cd04666 Nudix_Hydrolase_9 Memb 99.0 1.3E-09 2.8E-14 96.8 9.4 95 344-456 14-113 (122)
83 cd04674 Nudix_Hydrolase_16 Mem 99.0 3.9E-09 8.4E-14 93.4 11.8 101 346-459 16-116 (118)
84 cd04685 Nudix_Hydrolase_26 Mem 99.0 2.1E-09 4.5E-14 97.0 8.2 108 342-458 9-123 (133)
85 PRK05379 bifunctional nicotina 98.9 5.6E-09 1.2E-13 108.5 11.7 117 343-472 212-338 (340)
86 PRK03759 isopentenyl-diphospha 98.9 5.8E-09 1.2E-13 99.1 9.9 102 342-457 43-151 (184)
87 PRK00241 nudC NADH pyrophospha 98.9 7.4E-09 1.6E-13 103.5 10.0 100 343-460 141-240 (256)
88 PRK11762 nudE adenosine nucleo 98.9 4.3E-09 9.4E-14 100.0 7.8 102 342-456 56-157 (185)
89 COG1051 ADP-ribose pyrophospha 98.8 3.9E-08 8.4E-13 90.1 10.7 113 343-470 19-136 (145)
90 PRK10707 putative NUDIX hydrol 98.8 3.5E-08 7.7E-13 94.4 10.4 104 343-458 42-146 (190)
91 cd04663 Nudix_Hydrolase_6 Memb 98.7 9.9E-08 2.1E-12 85.4 10.1 94 345-458 14-116 (126)
92 COG1059 Thermostable 8-oxoguan 98.6 2.8E-07 6.1E-12 86.2 11.2 121 114-241 37-168 (210)
93 cd04662 Nudix_Hydrolase_5 Memb 98.6 4.2E-07 9.1E-12 81.2 11.2 49 344-395 14-65 (126)
94 cd04665 Nudix_Hydrolase_8 Memb 98.6 3.4E-07 7.3E-12 81.0 10.6 94 343-455 9-102 (118)
95 cd03676 Nudix_hydrolase_3 Memb 98.6 2.7E-07 5.9E-12 87.1 10.5 104 344-457 47-157 (180)
96 PLN02709 nudix hydrolase 98.5 2.8E-07 6.1E-12 89.8 7.5 102 344-455 50-152 (222)
97 PLN02552 isopentenyl-diphospha 98.4 1.5E-06 3.2E-11 86.4 10.9 127 342-474 65-226 (247)
98 TIGR00052 nudix-type nucleosid 98.4 4.9E-07 1.1E-11 86.2 6.9 104 343-457 55-164 (185)
99 COG0494 MutT NTP pyrophosphohy 98.4 2.4E-06 5.3E-11 74.7 10.1 45 345-395 24-69 (161)
100 PF00633 HHH: Helix-hairpin-he 98.3 1.6E-07 3.4E-12 62.9 1.1 27 187-213 4-30 (30)
101 TIGR02705 nudix_YtkD nucleosid 98.3 2.3E-06 5E-11 79.3 9.1 70 344-427 34-103 (156)
102 PLN02791 Nudix hydrolase homol 98.2 7.3E-06 1.6E-10 92.7 10.3 104 344-456 44-156 (770)
103 PRK10729 nudF ADP-ribose pyrop 98.2 7.1E-06 1.5E-10 79.3 8.8 90 359-457 81-170 (202)
104 cd03670 ADPRase_NUDT9 ADP-ribo 98.1 2.6E-05 5.7E-10 74.3 10.8 43 345-394 49-91 (186)
105 PF10576 EndIII_4Fe-2S: Iron-s 97.6 1.7E-05 3.7E-10 46.1 0.4 17 277-293 1-17 (17)
106 PRK15009 GDP-mannose pyrophosp 97.5 0.00053 1.1E-08 65.8 8.8 104 344-458 57-166 (191)
107 PLN03143 nudix hydrolase; Prov 97.3 0.00073 1.6E-08 68.8 8.5 47 346-395 144-191 (291)
108 KOG3069 Peroxisomal NUDIX hydr 97.3 0.00051 1.1E-08 66.8 6.8 105 344-457 57-162 (246)
109 COG2816 NPY1 NTP pyrophosphohy 97.1 0.00034 7.4E-09 70.2 3.1 99 344-460 154-253 (279)
110 smart00525 FES FES domain. iro 96.9 0.00044 9.5E-09 44.6 1.1 22 276-297 1-22 (26)
111 COG1443 Idi Isopentenyldiphosp 96.4 0.006 1.3E-07 57.1 5.5 96 342-458 42-153 (185)
112 KOG3084 NADH pyrophosphatase I 96.3 0.007 1.5E-07 61.4 5.6 50 342-395 196-245 (345)
113 KOG2839 Diadenosine and diphos 95.6 0.02 4.3E-07 52.1 5.1 44 346-395 25-68 (145)
114 KOG3041 Nucleoside diphosphate 94.7 0.12 2.6E-06 49.4 7.5 72 346-426 89-162 (225)
115 KOG0648 Predicted NUDIX hydrol 94.5 0.021 4.5E-07 57.9 2.1 115 342-470 124-245 (295)
116 smart00278 HhH1 Helix-hairpin- 94.4 0.031 6.7E-07 36.0 2.1 21 194-214 1-21 (26)
117 PF14716 HHH_8: Helix-hairpin- 93.9 0.18 3.8E-06 40.1 6.0 56 157-213 9-66 (68)
118 TIGR00426 competence protein C 92.8 0.15 3.3E-06 40.4 4.0 57 148-213 7-66 (69)
119 PF12826 HHH_2: Helix-hairpin- 92.1 0.15 3.2E-06 40.1 3.1 36 179-214 16-55 (64)
120 PF09674 DUF2400: Protein of u 91.7 0.16 3.4E-06 50.3 3.4 55 219-274 176-230 (232)
121 TIGR02757 conserved hypothetic 91.4 0.16 3.5E-06 50.0 3.1 55 219-274 173-227 (229)
122 COG4119 Predicted NTP pyrophos 90.9 0.94 2E-05 40.4 7.1 119 346-476 19-152 (161)
123 KOG4195 Transient receptor pot 89.4 0.41 9E-06 46.5 4.0 38 346-390 140-177 (275)
124 PLN02839 nudix hydrolase 88.9 1.1 2.4E-05 47.1 7.0 122 343-474 216-349 (372)
125 KOG0142 Isopentenyl pyrophosph 88.6 0.57 1.2E-05 45.0 4.2 108 342-457 61-182 (225)
126 KOG2875 8-oxoguanine DNA glyco 88.6 0.17 3.6E-06 50.9 0.7 100 22-168 108-228 (323)
127 COG4112 Predicted phosphoester 88.3 3.5 7.7E-05 38.4 9.0 110 343-460 70-190 (203)
128 PF05559 DUF763: Protein of un 84.1 3.8 8.3E-05 42.2 7.7 61 173-238 251-314 (319)
129 PRK02515 psbU photosystem II c 82.5 1.7 3.8E-05 39.1 4.0 57 144-212 48-105 (132)
130 TIGR00624 tag DNA-3-methyladen 81.3 9.2 0.0002 36.4 8.7 71 114-184 28-103 (179)
131 PRK10353 3-methyl-adenine DNA 81.2 8.7 0.00019 36.8 8.5 71 114-184 29-104 (187)
132 PF12836 HHH_3: Helix-hairpin- 80.9 1.3 2.8E-05 34.7 2.4 24 191-214 11-34 (65)
133 PF11731 Cdd1: Pathogenicity l 80.7 1.7 3.7E-05 36.9 3.1 30 192-221 10-39 (93)
134 PF03352 Adenine_glyco: Methyl 80.4 6 0.00013 37.7 7.1 71 114-184 24-99 (179)
135 TIGR01259 comE comEA protein. 79.6 2.7 5.8E-05 37.3 4.3 61 146-213 57-117 (120)
136 PRK13901 ruvA Holliday junctio 79.6 4.4 9.6E-05 39.1 6.0 27 191-217 104-130 (196)
137 PF14520 HHH_5: Helix-hairpin- 79.2 1.6 3.4E-05 33.6 2.3 19 193-211 37-55 (60)
138 PRK14601 ruvA Holliday junctio 78.9 1.5 3.2E-05 41.9 2.5 27 191-217 105-131 (183)
139 KOG4548 Mitochondrial ribosoma 78.9 4.6 0.0001 40.2 5.9 103 344-459 138-248 (263)
140 TIGR00615 recR recombination p 78.1 1.7 3.7E-05 41.9 2.7 28 191-218 8-35 (195)
141 PRK00076 recR recombination pr 77.8 1.7 3.7E-05 41.9 2.6 28 191-218 8-35 (196)
142 PRK07945 hypothetical protein; 77.7 2.9 6.4E-05 43.6 4.5 58 157-214 8-69 (335)
143 COG1555 ComEA DNA uptake prote 77.6 1.7 3.7E-05 40.1 2.5 24 191-214 94-117 (149)
144 PRK00116 ruvA Holliday junctio 77.5 4.4 9.6E-05 38.8 5.4 24 191-214 105-128 (192)
145 COG0353 RecR Recombinational D 77.3 1.8 3.8E-05 41.6 2.5 27 191-217 9-35 (198)
146 PRK13844 recombination protein 76.7 1.9 4.2E-05 41.6 2.6 28 191-218 12-39 (200)
147 PRK14606 ruvA Holliday junctio 76.4 1.9 4.2E-05 41.3 2.5 27 191-217 105-131 (188)
148 smart00483 POLXc DNA polymeras 76.1 7.2 0.00016 40.7 6.9 59 158-217 12-72 (334)
149 COG1796 POL4 DNA polymerase IV 76.0 3.8 8.2E-05 42.3 4.6 58 157-214 13-73 (326)
150 PRK14602 ruvA Holliday junctio 75.8 2.1 4.5E-05 41.6 2.6 27 191-217 106-132 (203)
151 PRK14603 ruvA Holliday junctio 75.6 2.1 4.5E-05 41.4 2.5 27 191-217 104-130 (197)
152 COG0632 RuvA Holliday junction 75.5 2 4.4E-05 41.6 2.4 27 191-217 105-131 (201)
153 TIGR00608 radc DNA repair prot 75.4 3.1 6.7E-05 40.8 3.7 63 153-217 13-84 (218)
154 TIGR01259 comE comEA protein. 75.2 2.3 5.1E-05 37.7 2.6 23 192-214 66-88 (120)
155 PRK14604 ruvA Holliday junctio 75.0 2.2 4.8E-05 41.1 2.5 27 191-217 105-131 (195)
156 PRK00116 ruvA Holliday junctio 74.7 4.2 9E-05 39.0 4.3 41 194-236 73-116 (192)
157 PRK00024 hypothetical protein; 73.9 3.7 8E-05 40.4 3.8 58 153-212 23-84 (224)
158 cd00141 NT_POLXc Nucleotidyltr 72.3 9 0.00019 39.5 6.4 41 171-212 23-63 (307)
159 PRK14605 ruvA Holliday junctio 72.0 5 0.00011 38.6 4.2 21 192-212 106-126 (194)
160 PRK14600 ruvA Holliday junctio 71.9 2.7 5.7E-05 40.3 2.3 26 191-217 105-130 (186)
161 PF12836 HHH_3: Helix-hairpin- 71.5 8.7 0.00019 30.0 4.8 52 151-211 8-61 (65)
162 COG2818 Tag 3-methyladenine DN 71.4 23 0.00049 33.9 8.3 70 115-184 31-105 (188)
163 PRK14605 ruvA Holliday junctio 70.9 3.1 6.7E-05 40.1 2.5 13 195-207 74-86 (194)
164 PF11798 IMS_HHH: IMS family H 70.3 3 6.6E-05 28.2 1.6 17 195-211 12-28 (32)
165 TIGR00084 ruvA Holliday juncti 69.8 3.4 7.4E-05 39.7 2.5 25 191-215 104-128 (191)
166 COG1555 ComEA DNA uptake prote 69.1 5.8 0.00012 36.6 3.7 55 150-211 90-144 (149)
167 PF02371 Transposase_20: Trans 68.3 4.4 9.6E-05 33.6 2.6 23 194-216 2-24 (87)
168 PF14520 HHH_5: Helix-hairpin- 65.8 11 0.00024 28.9 4.2 39 139-180 19-59 (60)
169 cd00141 NT_POLXc Nucleotidyltr 64.8 25 0.00054 36.2 7.9 28 188-217 79-106 (307)
170 PRK00024 hypothetical protein; 64.7 16 0.00034 36.0 6.1 65 119-184 28-94 (224)
171 PRK02515 psbU photosystem II c 63.7 5.1 0.00011 36.1 2.2 22 191-212 58-79 (132)
172 PRK14973 DNA topoisomerase I; 63.6 21 0.00045 42.5 7.8 88 144-234 822-917 (936)
173 TIGR00084 ruvA Holliday juncti 62.5 5.3 0.00012 38.3 2.3 21 193-213 71-91 (191)
174 smart00279 HhH2 Helix-hairpin- 62.1 5.7 0.00012 27.6 1.8 17 196-212 18-34 (36)
175 PRK08609 hypothetical protein; 62.0 24 0.00051 39.6 7.6 24 188-211 82-105 (570)
176 PRK08609 hypothetical protein; 61.8 12 0.00027 41.9 5.3 60 157-217 11-72 (570)
177 TIGR00588 ogg 8-oxoguanine DNA 61.1 28 0.0006 36.0 7.4 49 14-93 102-150 (310)
178 TIGR00608 radc DNA repair prot 60.8 21 0.00046 35.0 6.1 64 120-184 19-88 (218)
179 PRK14601 ruvA Holliday junctio 59.6 13 0.00029 35.5 4.4 45 193-237 72-117 (183)
180 PF10391 DNA_pol_lambd_f: Fing 58.7 8 0.00017 29.2 2.2 23 194-216 2-24 (52)
181 TIGR00426 competence protein C 58.2 8.8 0.00019 30.2 2.5 22 192-213 14-36 (69)
182 PRK14602 ruvA Holliday junctio 58.1 16 0.00035 35.4 4.7 45 193-237 73-118 (203)
183 PRK14606 ruvA Holliday junctio 57.3 14 0.0003 35.4 4.1 45 193-237 72-117 (188)
184 PRK14600 ruvA Holliday junctio 56.8 12 0.00027 35.7 3.7 43 193-237 72-116 (186)
185 COG2003 RadC DNA repair protei 56.7 27 0.00058 34.5 6.0 67 118-185 27-95 (224)
186 PRK13482 DNA integrity scannin 56.6 24 0.00052 37.1 6.0 48 136-185 298-345 (352)
187 PF04904 NCD1: NAB conserved r 56.4 42 0.00091 27.5 6.0 54 132-185 19-76 (82)
188 KOG2841 Structure-specific end 55.3 16 0.00034 36.2 4.1 62 113-181 186-249 (254)
189 PRK14603 ruvA Holliday junctio 54.6 17 0.00038 35.0 4.3 45 193-237 71-116 (197)
190 COG2003 RadC DNA repair protei 53.0 21 0.00046 35.1 4.6 56 154-211 24-83 (224)
191 cd00080 HhH2_motif Helix-hairp 52.4 10 0.00022 30.7 1.9 19 195-213 23-41 (75)
192 PF13869 NUDIX_2: Nucleotide h 51.3 42 0.00092 32.2 6.2 41 345-393 58-98 (188)
193 PF14229 DUF4332: Domain of un 51.2 38 0.00083 30.0 5.6 78 145-236 16-95 (122)
194 PRK14670 uvrC excinuclease ABC 50.7 25 0.00053 39.6 5.3 76 124-214 488-566 (574)
195 PRK14604 ruvA Holliday junctio 50.0 22 0.00047 34.3 4.2 45 193-237 72-117 (195)
196 PRK07956 ligA NAD-dependent DN 48.0 46 0.001 38.1 7.0 60 146-211 468-528 (665)
197 PRK12766 50S ribosomal protein 47.4 12 0.00025 37.1 1.9 24 194-217 3-26 (232)
198 TIGR00575 dnlj DNA ligase, NAD 47.4 66 0.0014 36.8 8.1 60 146-212 455-516 (652)
199 KOG2534 DNA polymerase IV (fam 46.7 59 0.0013 33.8 6.7 65 171-237 34-106 (353)
200 smart00483 POLXc DNA polymeras 45.6 13 0.00028 38.8 2.0 31 186-218 81-111 (334)
201 COG0272 Lig NAD-dependent DNA 45.5 20 0.00044 40.6 3.6 57 157-213 505-562 (667)
202 PRK14350 ligA NAD-dependent DN 45.0 32 0.0007 39.4 5.2 23 192-214 539-561 (669)
203 PF13174 TPR_6: Tetratricopept 44.0 47 0.001 21.0 3.9 28 120-147 5-32 (33)
204 COG1415 Uncharacterized conser 43.6 18 0.00038 37.8 2.6 68 189-258 273-345 (373)
205 PRK13901 ruvA Holliday junctio 43.1 16 0.00035 35.3 2.1 45 193-237 71-116 (196)
206 KOG2457 A/G-specific adenine D 42.2 2.2 4.8E-05 44.8 -4.1 161 261-427 253-435 (555)
207 PRK13482 DNA integrity scannin 41.3 24 0.00052 37.1 3.1 34 177-210 298-335 (352)
208 COG1379 PHP family phosphoeste 40.7 1.6E+02 0.0036 30.8 8.8 49 114-162 303-352 (403)
209 KOG3835 Transcriptional corepr 39.9 69 0.0015 34.0 6.1 57 131-187 20-80 (495)
210 PRK08097 ligB NAD-dependent DN 38.2 1E+02 0.0023 34.6 7.7 73 139-214 439-540 (562)
211 PRK00558 uvrC excinuclease ABC 37.9 17 0.00036 41.1 1.5 23 191-213 572-594 (598)
212 PF14443 DBC1: DBC1 37.4 1.6E+02 0.0035 26.5 7.3 49 346-395 9-59 (126)
213 PF00416 Ribosomal_S13: Riboso 36.9 27 0.00059 30.2 2.4 22 193-214 14-35 (107)
214 COG0122 AlkA 3-methyladenine D 36.7 1.1E+02 0.0023 31.4 7.0 119 9-164 81-201 (285)
215 PF00570 HRDC: HRDC domain Blo 36.2 49 0.0011 25.5 3.5 31 171-208 28-58 (68)
216 PF03118 RNA_pol_A_CTD: Bacter 35.0 27 0.00059 27.6 1.9 46 164-211 15-61 (66)
217 COG0632 RuvA Holliday junction 34.5 25 0.00053 34.2 1.9 44 193-236 72-116 (201)
218 COG4277 Predicted DNA-binding 33.9 28 0.00062 35.8 2.2 22 192-213 328-349 (404)
219 PRK14668 uvrC excinuclease ABC 33.8 39 0.00085 38.0 3.6 75 124-213 499-576 (577)
220 PRK14351 ligA NAD-dependent DN 33.7 25 0.00055 40.3 2.1 58 146-212 485-546 (689)
221 PF10440 WIYLD: Ubiquitin-bind 33.2 79 0.0017 25.2 4.1 41 75-129 23-63 (65)
222 PRK14666 uvrC excinuclease ABC 32.3 80 0.0017 36.3 5.7 75 125-213 610-688 (694)
223 TIGR00375 conserved hypothetic 31.7 1.4E+02 0.003 31.9 7.0 49 114-162 296-345 (374)
224 PF12826 HHH_2: Helix-hairpin- 29.3 53 0.0012 25.6 2.7 40 138-179 16-55 (64)
225 smart00611 SEC63 Domain of unk 28.7 1E+02 0.0022 31.2 5.4 45 164-211 124-168 (312)
226 COG1255 Uncharacterized protei 28.7 62 0.0013 28.8 3.2 76 200-277 20-95 (129)
227 PF01367 5_3_exonuc: 5'-3' exo 28.3 13 0.00029 32.0 -1.0 22 193-214 17-38 (101)
228 PRK00254 ski2-like helicase; P 27.9 57 0.0012 37.6 3.7 51 174-227 628-678 (720)
229 KOG1689 mRNA cleavage factor I 26.8 1.4E+02 0.0031 28.2 5.4 39 345-391 84-122 (221)
230 PF03686 UPF0146: Uncharacteri 26.7 17 0.00038 32.6 -0.6 74 201-276 21-94 (127)
231 COG1491 Predicted RNA-binding 26.6 41 0.00089 32.2 1.8 27 192-218 128-154 (202)
232 PRK14976 5'-3' exonuclease; Pr 26.5 38 0.00082 34.5 1.7 18 195-212 192-209 (281)
233 PRK09482 flap endonuclease-lik 26.2 40 0.00086 34.0 1.8 19 195-213 183-201 (256)
234 PF04891 NifQ: NifQ; InterPro 25.7 1.3E+02 0.0029 28.3 5.1 75 202-293 83-165 (167)
235 PRK14667 uvrC excinuclease ABC 25.6 1.1E+02 0.0023 34.5 5.2 77 123-213 485-564 (567)
236 PRK07758 hypothetical protein; 25.4 48 0.001 28.3 1.9 21 191-211 64-84 (95)
237 cd00008 53EXOc 5'-3' exonuclea 25.0 43 0.00094 33.1 1.8 18 195-212 184-201 (240)
238 TIGR01954 nusA_Cterm_rpt trans 25.0 1.2E+02 0.0026 21.7 3.8 35 144-181 13-48 (50)
239 PRK00254 ski2-like helicase; P 24.9 1.1E+02 0.0024 35.3 5.3 55 156-213 641-697 (720)
240 COG1796 POL4 DNA polymerase IV 24.6 1E+02 0.0022 32.0 4.4 64 137-213 80-147 (326)
241 PRK14672 uvrC excinuclease ABC 24.2 1.4E+02 0.0029 34.5 5.6 85 123-220 579-666 (691)
242 smart00475 53EXOc 5'-3' exonuc 23.8 48 0.001 33.4 1.9 17 196-212 188-204 (259)
243 KOG2937 Decapping enzyme compl 22.8 38 0.00083 35.2 1.0 45 344-395 94-138 (348)
244 PRK14552 C/D box methylation g 22.7 3.7E+02 0.0081 29.0 8.4 16 78-93 153-168 (414)
245 PF13543 KSR1-SAM: SAM like do 22.4 2E+02 0.0043 26.1 5.3 57 115-178 67-124 (129)
246 CHL00137 rps13 ribosomal prote 22.0 55 0.0012 29.2 1.7 21 193-213 16-36 (122)
247 COG0258 Exo 5'-3' exonuclease 21.6 1.4E+02 0.003 30.6 4.8 48 154-212 169-216 (310)
248 PF04919 DUF655: Protein of un 21.3 61 0.0013 30.9 1.9 28 191-218 113-140 (181)
249 PRK12766 50S ribosomal protein 20.7 1.5E+02 0.0032 29.5 4.5 38 140-180 18-57 (232)
250 PF14490 HHH_4: Helix-hairpin- 20.1 1.2E+02 0.0026 25.4 3.3 53 155-213 7-65 (94)
No 1
>PRK10880 adenine DNA glycosylase; Provisional
Probab=100.00 E-value=4.9e-76 Score=604.28 Aligned_cols=340 Identities=35% Similarity=0.607 Sum_probs=292.2
Q ss_pred HHHHHHHHHHHhhCCC-CCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHH
Q 010868 81 KKIRQSLLQWYDKNQR-ELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEV 159 (498)
Q Consensus 81 ~~~~~~L~~wy~~~~r-~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel 159 (498)
..|.+.|++||..++| +||||.+ .|||++|||+||+|||++++|.++|.+|+++|||+++||+|++++|
T Consensus 4 ~~~~~~ll~W~~~~~r~~lpWr~~----------~dpy~ilVseILlQQT~v~~v~~~~~rl~~~fPt~~~La~a~~eel 73 (350)
T PRK10880 4 SQFSAQVLDWYDKYGRKTLPWQID----------KTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEV 73 (350)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCC----------CCHHHHHHHHHHHhhccHHHHHHHHHHHHHHCcCHHHHHCcCHHHH
Confidence 3689999999999997 8999985 5899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhcccC
Q 010868 160 NEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISA 238 (498)
Q Consensus 160 ~~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i~~ 238 (498)
+++|+++|||+||++|+++|+.|+++ +|.+|+++++|++|||||+|||++|++||||+++++||+||+||++|+++++.
T Consensus 74 ~~~~~glGyy~RAr~L~~~A~~i~~~~~g~~p~~~~~L~~LpGIG~~TA~aIl~~af~~~~~iVD~nV~RV~~Rl~~i~~ 153 (350)
T PRK10880 74 LHLWTGLGYYARARNLHKAAQQVATLHGGEFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSG 153 (350)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhCCCchhhHHHHhcCCCccHHHHHHHHHHHCCCCeecccHHHHHHHHHHhcccC
Confidence 99999999999999999999999988 88999999999999999999999999999999999999999999999998876
Q ss_pred CCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCCCCCCCCCcccChhhhcCCCCCccceecccccccccc
Q 010868 239 NPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKAR 318 (498)
Q Consensus 239 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~CpL~~~C~~~~~~~~~~~~~~~~~p~k~~K~k 318 (498)
.+......+.++++++.++|.+.+++||++||+||+.+|++++|+|+.|||++.|.+|+.+. ++.||+|.+|++
T Consensus 154 ~~~~~~~~~~l~~~~~~l~p~~~~~~~nqalm~lGa~vC~p~~P~C~~Cpl~~~C~~~~~~~------~~~~P~k~~k~~ 227 (350)
T PRK10880 154 WPGKKEVENRLWQLSEQVTPAVGVERFNQAMMDLGAMVCTRSKPKCELCPLQNGCIAYANHS------WALYPGKKPKQT 227 (350)
T ss_pred CCChHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhHHhccCCCCCCCCCccHhhhHHHHcCC------HhhCCCCCCCCC
Confidence 55555667788999999999999999999999999999999999999999999999999885 678999988876
Q ss_pred cceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCc
Q 010868 319 QRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNC 398 (498)
Q Consensus 319 ~k~~~v~~~II~~~~~~~~~~~~~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~ 398 (498)
.+.....+.|+ ..+|++||+|||++|+|+||||||+.+ . ++.+...+ +++|+...
T Consensus 228 ~~~~~~~~~~~------------~~~~~~~l~~r~~~gl~~gl~~fP~~~--~-------~~~~~~~~-~~~~~~~~--- 282 (350)
T PRK10880 228 LPERTGYFLLL------------QHGDEVWLEQRPPSGLWGGLFCFPQFA--D-------EEELRQWL-AQRGIAAD--- 282 (350)
T ss_pred CCeEEEEEEEE------------EECCEEEEEECCccChhhccccCCCCc--c-------hhhHHHHH-HhcCCchh---
Confidence 66655555555 357899999999999999999999852 1 12233333 56776432
Q ss_pred ccccccccccEEEEcCCeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHH
Q 010868 399 SIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQ 472 (498)
Q Consensus 399 ~~~~~~~l~~v~H~fsH~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (498)
....+++++|+|||++|++++|.+.+ ..... .. ...+..|++.+++.+++||++++|+++.++
T Consensus 283 ---~~~~~~~~~H~fTH~~~~~~~~~~~~--~~~~~----~~--~~~~~~w~~~~~~~~~~~p~~~~k~l~~~~ 345 (350)
T PRK10880 283 ---NLTQLTAFRHTFSHFHLDIVPMWLPV--SSFTG----CM--DEGNGLWYNLAQPPSVGLAAPVERLLQQLR 345 (350)
T ss_pred ---hhcccCceEEEEeeEEEEEEEEEEEc--ccccc----cc--CCcCCeEechHHhcccCCcHHHHHHHHHhc
Confidence 12347899999999999999987653 21100 00 112346999999999999999999998754
No 2
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.5e-74 Score=577.84 Aligned_cols=334 Identities=44% Similarity=0.772 Sum_probs=292.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHH
Q 010868 78 KEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLE 157 (498)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~e 157 (498)
.....|++.|++||+.++|+||||.+ .+||.+||||||+|||++++|+++|.+|+++|||+++||+|+.+
T Consensus 6 ~~~~~~~~~ll~Wy~~~~R~LPWR~~----------~~PY~VwvSEiMLQQT~v~~Vi~yy~~fl~rfPti~~LA~A~~~ 75 (342)
T COG1194 6 GDIEKFQEALLDWYDKNGRDLPWRET----------KDPYRVWVSEIMLQQTQVATVIPYYERFLERFPTIKALAAAPED 75 (342)
T ss_pred hhhHHHHHHHHHHHHHhCCcCCCCCC----------CCcceehhHHHHhhhccHhhhhhhHHHHHHhCCCHHHHhcCCHH
Confidence 34457899999999999999999996 47999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhcc
Q 010868 158 EVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAI 236 (498)
Q Consensus 158 el~~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i 236 (498)
||..+|.|+|||+|||+|+++|+.++++ +|.+|++.++|.+|||||+|||.+||+|+||+|.++||+||.||++|++.+
T Consensus 76 evl~~W~gLGYysRArnL~~~A~~v~~~~~G~~P~~~~~l~~LpGiG~yTa~Ail~~a~~~~~~~lDgNV~RVl~R~f~i 155 (342)
T COG1194 76 EVLKAWEGLGYYSRARNLHKAAQEVVERHGGEFPDDEEELAALPGVGPYTAGAILSFAFNQPEPVLDGNVKRVLSRLFAI 155 (342)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCCcHHHHHHHHHHHhCCCCceeecchheeehhhhcc
Confidence 9999999999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHhhcCCCC-hHHHHHHHHHhcchhccCCCCCCCCCCCcccChhhhcCCCCCccceeccccccc
Q 010868 237 SANPKDTSTVKNFWKLATQLVDSCR-PGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVL 315 (498)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~l~~~G~~iC~~~~P~C~~CpL~~~C~~~~~~~~~~~~~~~~~p~k~~ 315 (498)
+.+.....+.+.+|.+++.++.++. +++|||+|||+|+.||++++|+|+.|||++.|.+|..+. ...||+|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~ll~p~~~~~~fnqammdlGA~ICt~~~P~C~~CPl~~~c~a~~~g~------~~~~P~k~~ 229 (342)
T COG1194 156 SGDIGKPKTKKELWELAEQLLTPDRRPGDFNQAMMDLGATICTAKKPKCSLCPLRDNCAAYRNGT------PEKYPVKKP 229 (342)
T ss_pred cccccccchhHHHHHHHHHhcCCCCChHHHHHHHHHhhhHhhcCCCCCCCcCcchHHHHHHHcCC------cccCCCcCc
Confidence 9877766788999999999776666 899999999999999999999999999999999999995 568999999
Q ss_pred ccccceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCC
Q 010868 316 KARQRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPR 395 (498)
Q Consensus 316 K~k~k~~~v~~~II~~~~~~~~~~~~~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~ 395 (498)
|++++ ...++.++. +.+|++++.||+++|+|+|||+||.++.+.+ ++ ..+. +.++
T Consensus 230 k~~~~-~~~~~~~~~-----------~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~~--------~~-~~~~-~~~~--- 284 (342)
T COG1194 230 KKKLP-RRFAAFLIL-----------NRDGEVLLEKRPEKGLLGGLWCFPQFEDEAD--------LL-DWLA-ADGL--- 284 (342)
T ss_pred ccccc-hheeeEEEE-----------ccCcchhhhhCcccCceecccccccccccch--------hh-hHhh-hccc---
Confidence 88777 555555554 6789999999999999999999999865431 11 1111 2222
Q ss_pred CCcccccccccccEEEEcCCeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHH
Q 010868 396 NNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQ 472 (498)
Q Consensus 396 ~~~~~~~~~~l~~v~H~fsH~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (498)
+.+.+++++|+|||++++++ +... ... ... ++.|++.+++..+++|.+++|+++.+.
T Consensus 285 ------~~~~~~~~~H~fth~~l~i~-~~a~--~~~----------~~~-~~~w~~~~~~~~~~l~~p~~k~l~~~~ 341 (342)
T COG1194 285 ------AAEPLGAFRHTFTHFRLTIE-LRAS--ASL----------VLS-DGRWYNLSDLESIGLPAPVKKLLQQLK 341 (342)
T ss_pred ------ccccccceeeeeeEEEEEEE-EEee--ccc----------CCC-CceeccccccccccccHHHHHHHHHhc
Confidence 22578999999999999999 3222 111 123 689999999999999999999998764
No 3
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=100.00 E-value=1.6e-66 Score=519.73 Aligned_cols=259 Identities=45% Similarity=0.836 Sum_probs=240.3
Q ss_pred HHHHHHHHHhhCCC-CCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHH
Q 010868 83 IRQSLLQWYDKNQR-ELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNE 161 (498)
Q Consensus 83 ~~~~L~~wy~~~~r-~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel~~ 161 (498)
|++.|++||..++| ++|||.+ .|||++||++||+|||++++|.++|.+|+++|||+++|+++++++|.+
T Consensus 2 ~~~~l~~w~~~~~r~~lpWr~~----------~dpy~vlvseIL~QQT~v~~v~~~~~rl~~~fpt~~~La~a~~eeL~~ 71 (275)
T TIGR01084 2 FSEDLLSWYDKYGRKTLPWRQN----------KTPYRVWLSEVMLQQTQVATVIPYFERFLERFPTVQALANAPQDEVLK 71 (275)
T ss_pred hHHHHHHHHHHhCCCCCCCCCC----------CCHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCHHHHHCcCHHHHHH
Confidence 67899999999998 9999985 589999999999999999999999999999999999999999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhcccCCC
Q 010868 162 MWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANP 240 (498)
Q Consensus 162 ~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i~~~~ 240 (498)
+|+++|||+||++|+++|+.|+++ +|.+|+++++|++|||||+|||++|++|+||+|.++||+||+||++|+++++.++
T Consensus 72 ~~~~lG~y~RAr~L~~~A~~i~~~~~g~~p~~~~~L~~LpGIG~~TA~~Il~~a~~~~~~~vD~~v~RVl~Rl~~~~~~~ 151 (275)
T TIGR01084 72 LWEGLGYYARARNLHKAAQEVVEEFGGEFPQDFEDLAALPGVGRYTAGAILSFALNKPYPILDGNVKRVLSRLFAVEGWP 151 (275)
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcchHhHHHHHHHHccCcCCC
Confidence 999999999999999999999987 7889999999999999999999999999999999999999999999999987666
Q ss_pred CChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCCCCCCCCCcccChhhhcCCCCCccceecccccccccccc
Q 010868 241 KDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQR 320 (498)
Q Consensus 241 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~CpL~~~C~~~~~~~~~~~~~~~~~p~k~~K~k~k 320 (498)
+...+.+.+|.+++.++|.+.+++||++||+||+.+|++++|+|+.|||++.|.++..+. +..||+|++|++++
T Consensus 152 ~~~~~~~~l~~~~~~~lp~~~~~~~n~alm~lG~~vC~~~~P~C~~Cpl~~~C~~~~~~~------~~~~p~~~~~~~~~ 225 (275)
T TIGR01084 152 GKKKVENRLWTLAESLLPKADPEAFNQALMDLGAMICTRKKPKCDLCPLQDFCLAYQQGT------WEEYPVKKPKAAPP 225 (275)
T ss_pred CHHHHHHHHHHHHHHHCChhhHHHHHHHHHHHhHHHcCCCCCCCCCCCChhhCHHHHcCC------HhhcCCCCCCCCCC
Confidence 555677789999999999999999999999999999999999999999999999999885 67899998887766
Q ss_pred eeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccc
Q 010868 321 HDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSII 368 (498)
Q Consensus 321 ~~~v~~~II~~~~~~~~~~~~~~~gkvLI~KRp~~gllaGLWEFPggk 368 (498)
.....+.++. ..+|++|++|||++|+|+||||||+.+
T Consensus 226 ~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~gl~~~p~~~ 262 (275)
T TIGR01084 226 ERTTYFLVLQ-----------NYDGEVLLEQRPEKGLWGGLYCFPQFE 262 (275)
T ss_pred eEEEEEEEEE-----------eCCCeEEEEeCCCCchhhccccCCCCC
Confidence 6666666664 457899999999999999999999863
No 4
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=100.00 E-value=4.7e-65 Score=508.27 Aligned_cols=372 Identities=47% Similarity=0.751 Sum_probs=296.9
Q ss_pred hhhhhcCHHHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHH
Q 010868 70 DIEDLFSEKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIH 149 (498)
Q Consensus 70 ~~~~~~~~~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~ 149 (498)
+++++|+..|+.+|+..|++||+.++|+||||+..+. .+.+.++..|++|||+||+|||++.+|..||.+|++++||..
T Consensus 80 sy~~l~~~~Ev~~fR~sLl~wYD~~KRdLPWR~r~sE-de~DwerRaYeVwVSEiMLQQTrV~TV~~YYt~WMqkwPTl~ 158 (555)
T KOG2457|consen 80 SYEDLFSENEVQKFRMSLLDWYDVNKRDLPWRNRRSE-DEKDWERRAYEVWVSEIMLQQTRVQTVMKYYTRWMQKWPTLY 158 (555)
T ss_pred cHHHHhhHHHHHHHHHHHHHHhhhhcccCccccCCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence 5557899999999999999999999999999986422 235567789999999999999999999999999999999999
Q ss_pred HHHhCCH-HHHHHHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhc-CCCCcHHHHHHHHHHhcCCcccccccch
Q 010868 150 HLAKASL-EEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRK-VPGIGNYTAGAIASIAFKEVVPVVDGNV 226 (498)
Q Consensus 150 ~La~a~~-eel~~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~-LpGIG~~TA~~il~~a~~~p~~~VD~~v 226 (498)
+||.|+. ++|.++|.|+|||+|+|+|++.|+++++. +|.+|.+-+.|++ +||||+|||.+|+++|||++.-+||+||
T Consensus 159 dla~Asl~~eVn~lWaGlGyY~R~rrL~ega~~vv~~~~ge~Prta~~l~kgvpGVG~YTAGAiaSIAf~q~tGiVDGNV 238 (555)
T KOG2457|consen 159 DLAQASLEKEVNELWAGLGYYRRARRLLEGAKMVVAGTEGEFPRTASSLMKGVPGVGQYTAGAIASIAFNQVTGIVDGNV 238 (555)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCCCCccchhhhhhhhhcCcccccccch
Confidence 9999999 89999999999999999999999999998 8889999999998 9999999999999999999999999999
Q ss_pred hhHHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCCCCCCCCCcccChhhhcCCCCCccc
Q 010868 227 IRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVL 306 (498)
Q Consensus 227 ~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~CpL~~~C~~~~~~~~~~~~~ 306 (498)
.||++|...|..++.+....+.+|.+|.+++++.+|+||||++|++|+++|||.+|.|+.||+.+.|.+|+...+++.+.
T Consensus 239 irvlsRalAIhsDcSkgk~~q~~wkLA~qLVDP~RPGDFNQalMELGAt~CTpq~P~CS~CPvss~CrA~q~~Eqn~~i~ 318 (555)
T KOG2457|consen 239 IRVLSRALAIHSDCSKGKFFQSSWKLAAQLVDPSRPGDFNQALMELGATLCTPQKPSCSSCPVSSQCRAFQLSEQNRTIS 318 (555)
T ss_pred HHHhHHhHhhcCCcchhhHHHHHHHHHHHhcCCCCCCcHHHHHHHhcCeeccCCCCCcCCCCcHHHHHHHhHhhhcceee
Confidence 99999999999888888888999999999999999999999999999999999999999999999999999765554333
Q ss_pred ------------------------------------eecccccccccccceeeeeeEEEEEecCCCCCCcccCCCeEEEE
Q 010868 307 ------------------------------------VTSYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDGVFILV 350 (498)
Q Consensus 307 ------------------------------------~~~~p~k~~K~k~k~~~v~~~II~~~~~~~~~~~~~~~gkvLI~ 350 (498)
+..||++..+++.+.++..++|.+ ..++ ....+.||+.
T Consensus 319 ~g~t~~~dve~~~P~~~~C~vCv~~ips~e~~Qs~gv~~~p~~p~~~~~reE~~~v~~~e---~~dp---~t~~~~ilv~ 392 (555)
T KOG2457|consen 319 VGDTYPTDVEKAKPRHDFCCVCVLEIPSLERNQSGGVFVLPKRPEQLAGREEFPSVILNE---EADP---ATRRNAILVY 392 (555)
T ss_pred cCCcCCccHhhcCCCCCceeEeecCCCCchhhccCcEEEeccChhhcCcccccceeeeec---cCCc---hhhcceeEEE
Confidence 333444444444444444444332 1111 1346799999
Q ss_pred ecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEEEEEEEEe
Q 010868 351 KRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIK 430 (498)
Q Consensus 351 KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~~~~~~~~ 430 (498)
+||..|+++|||+||.+..........+...+.+-+.-.++.... +. ......-|.+.|+|||+.++-++|...+ .
T Consensus 393 ~rp~~gllagLw~fpti~~~e~se~~~~~a~~q~~v~~w~~~~~~-t~-~~~~~~~G~~~htfshi~~ts~V~~~a~--~ 468 (555)
T KOG2457|consen 393 LRPAFGLLAGLWKFPTIVSRELSEFVHIFAHIQRKVYVWLLVVQL-TG-GTEDLFKGQAKHTFSHICVTSDVLSTAG--L 468 (555)
T ss_pred eccchhHHHHhhhcCceeccCcchHHHHHHHHHHHHHHHhccccc-cc-chhhhcccchhhhhhhhhhHHHHHHHhh--c
Confidence 999999999999999987632211222233344446556654432 10 1112234889999999999888774322 1
Q ss_pred CCcccccccccCCCCceeeecCCCcCC
Q 010868 431 GGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 431 g~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (498)
+.. +.....-.++|+...+|+-
T Consensus 469 ~~~-----~vt~~p~~~~wi~q~~l~h 490 (555)
T KOG2457|consen 469 TSA-----VVTVPPFRLQWIKQLSLDH 490 (555)
T ss_pred CCC-----ccccCCcccchhhhhhhHH
Confidence 111 1112234678999888844
No 5
>PRK13910 DNA glycosylase MutY; Provisional
Probab=100.00 E-value=1.1e-62 Score=493.72 Aligned_cols=282 Identities=30% Similarity=0.520 Sum_probs=237.4
Q ss_pred HhhhccHHHHHH-HHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCC
Q 010868 125 MLQQTRVQTVID-YYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGI 202 (498)
Q Consensus 125 l~QqT~~~~v~~-~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGI 202 (498)
|+|||++++|.+ +|.+|+++|||+++||+|+++||+++|+++|||+||++|+++|+.|+++ +|.+|.++++|++||||
T Consensus 1 mlQQT~v~~v~~~yy~rf~~~fPt~e~La~a~~~el~~~~~glGyy~RAr~L~~~A~~i~~~~~g~~P~~~~~L~~LpGI 80 (289)
T PRK13910 1 MSQQTQINTVVERFYSPFLEAFPTLKDLANAPLEEVLLLWRGLGYYSRAKNLKKSAEICVKEHHSQLPNDYQSLLKLPGI 80 (289)
T ss_pred CCCCCcHHHhHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCCCCChhHHHHHhCCCC
Confidence 899999999986 9999999999999999999999999999999999999999999999988 78999999999999999
Q ss_pred cHHHHHHHHHHhcCCcccccccchhhHHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCC
Q 010868 203 GNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNP 282 (498)
Q Consensus 203 G~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P 282 (498)
|+|||++||+||||+|+++||+||+||++|++++..+. +.+.++..++.++|.+.++++|++||+||+.+|++ +|
T Consensus 81 G~kTA~aIl~~af~~~~~~VD~nV~RVl~Rl~g~~~~~----~~~~l~~~~~~~l~~~~~~~~nqaLm~~Ga~iC~~-~P 155 (289)
T PRK13910 81 GAYTANAILCFGFREKSACVDANIKRVLLRLFGLDPNI----HAKDLQIKANDFLNLNESFNHNQALIDLGALICSP-KP 155 (289)
T ss_pred CHHHHHHHHHHHCCCCcCcccHHHHHHHHHHhcCCCCc----cHHHHHHHHHHhCCccchHHHHHHHHHHhHHHcCC-CC
Confidence 99999999999999999999999999999998876432 23457778888999999999999999999999999 79
Q ss_pred CCCCCCCcccChhhhcCCCCCccceecccccccccccceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCccc
Q 010868 283 NCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLW 362 (498)
Q Consensus 283 ~C~~CpL~~~C~~~~~~~~~~~~~~~~~p~k~~K~k~k~~~v~~~II~~~~~~~~~~~~~~~gkvLI~KRp~~gllaGLW 362 (498)
+|+.|||++.|.++..+.. . ++|.+|++++..... +++. .+|+||++||+ +|+|+|||
T Consensus 156 ~C~~CPl~~~C~~~~~~~~------~--~~~~kk~~~~~~~~~-~~~~------------~~~~~ll~kr~-~~l~~gl~ 213 (289)
T PRK13910 156 KCAICPLNPYCLGKNNPEK------H--TLKKKQEIVQEERYL-GVVI------------QNNQIALEKIE-QKLYLGMH 213 (289)
T ss_pred CCCCCcChhhhhhhhcCCc------c--ccCCCCCCCceEEEE-EEEE------------ECCEEEEEECC-Cchhcccc
Confidence 9999999999999998853 2 334444333333333 3332 36799999995 78999999
Q ss_pred ccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEEEEEEEEeCCcccccccccC
Q 010868 363 EFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDK 442 (498)
Q Consensus 363 EFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~~~~~~~~g~~~~~~~~~~~ 442 (498)
|||+.+ . +++... ..+++++|+|||++|++++|.+.+ ..
T Consensus 214 ~fP~~~--~-----------------~~~~~~---------~~~~~~~H~fTH~~~~~~~~~~~~--~~----------- 252 (289)
T PRK13910 214 HFPNLK--E-----------------NLEYKL---------PFLGAIKHSHTKFKLNLNLYLAAI--KD----------- 252 (289)
T ss_pred cCCCCh--h-----------------hhcccc---------cccCceEEEEEeEEEEEEEEEEEe--cc-----------
Confidence 999742 0 011111 136789999999999999997653 21
Q ss_pred CCCceeeecCCCcCCCCCChHHHHHHHHHHhh
Q 010868 443 GTLSWKCVDGGTLASMGLTSGVRKVYTMVQKF 474 (498)
Q Consensus 443 e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~ 474 (498)
...+++|++.+++.+++||.+++|+++.++..
T Consensus 253 ~~~~~~w~~~~~~~~~~~p~~~~k~~~~l~~~ 284 (289)
T PRK13910 253 LKNPIRFYSLKDLETLPISSMTLKILNFLKQK 284 (289)
T ss_pred CCccceEecHHHhhhcCCcHHHHHHHHHHhhh
Confidence 02346899999999999999999999988765
No 6
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-48 Score=373.06 Aligned_cols=203 Identities=27% Similarity=0.449 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHH
Q 010868 78 KEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLE 157 (498)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~e 157 (498)
..+..+.+.|..-|+.....+-|. |||++||+.||||||+++.+.+++.+|+++||||++|++++++
T Consensus 4 ~~~~~i~~~l~~~~p~~~~~l~~~-------------~pf~lLva~iLSaqttD~~vn~at~~Lf~~~~t~e~l~~a~~~ 70 (211)
T COG0177 4 KKALEILDRLRELYPEPKTELDFK-------------DPFELLVAVILSAQTTDEVVNKATPALFKRYPTPEDLLNADEE 70 (211)
T ss_pred hhHHHHHHHHHHHCCCCCCccCcC-------------CcHHHHHHHHHhccCchHHHHHHHHHHHHHcCCHHHHHcCCHH
Confidence 456678888888887665555443 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhc
Q 010868 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKA 235 (498)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~ 235 (498)
+|+++|+.+|||+ ||++|+++|+.|+++ +|++|+++++|++|||||+|||++||+++||.|+++|||||.||..|+|+
T Consensus 71 ~l~~~I~~iGlyr~KAk~I~~~~~~l~e~~~g~vP~~~~eL~~LPGVGrKTAnvVL~~a~g~p~i~VDTHV~Rvs~R~gl 150 (211)
T COG0177 71 ELEELIKSIGLYRNKAKNIKELARILLEKFGGEVPDTREELLSLPGVGRKTANVVLSFAFGIPAIAVDTHVHRVSNRLGL 150 (211)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHcCCCCCchHHHHHhCCCcchHHHHHHHHhhcCCCcccccchHHHHHHHhCC
Confidence 9999999999999 999999999999998 88999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCCCCCCCCCcccChhhhc
Q 010868 236 ISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSM 298 (498)
Q Consensus 236 i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~CpL~~~C~~~~~ 298 (498)
.+.. +..++++.+..++|.+.|.++|++|+.||+.+|++++|+|+.||+++.|++++.
T Consensus 151 ~~~~-----~p~~ve~~L~~~iP~~~~~~~h~~lI~~GR~iC~ar~P~C~~C~l~~~C~~~~~ 208 (211)
T COG0177 151 VPGK-----TPEEVEEALMKLIPKELWTDLHHWLILHGRYICKARKPRCEECPLADLCPSAGK 208 (211)
T ss_pred CCCC-----CHHHHHHHHHHHCCHHHHHHHHHHHHHhhhhhccCCCCCcCcccchhhCchhcc
Confidence 8731 334566677789999999999999999999999999999999999999999764
No 7
>PRK10702 endonuclease III; Provisional
Probab=100.00 E-value=9.9e-47 Score=364.06 Aligned_cols=202 Identities=18% Similarity=0.257 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHH
Q 010868 78 KEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLE 157 (498)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~e 157 (498)
+++..+.+.|.+.|+... +|.. .+|||++||++||+|||++.+|.+++.+|+.+|||+++|++++++
T Consensus 4 ~~~~~i~~~l~~~~~~~~---~~~~----------~~~p~e~lvs~iLsq~t~~~~v~~~~~~L~~~~pt~e~l~~a~~~ 70 (211)
T PRK10702 4 AKRLEILTRLRDNNPHPT---TELN----------FSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVE 70 (211)
T ss_pred HHHHHHHHHHHHHCCCCC---CCCC----------CCChHHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCHHHHHCCCHH
Confidence 346678889998887432 4443 257999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhc
Q 010868 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKA 235 (498)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~ 235 (498)
+|+++|+++|||+ ||++|+++|+.++++ +|.+|+++++|++|||||+|||++||+|+||+|+++||+||+||++|+|+
T Consensus 71 ~l~~~i~~~G~y~~kA~~l~~~a~~i~~~~~~~~p~~~~~Ll~lpGVG~ktA~~ill~a~~~~~~~VDt~v~Rv~~r~g~ 150 (211)
T PRK10702 71 GVKTYIKTIGLYNSKAENVIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQF 150 (211)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCCchHHHHhcCCcccHHHHHHHHHHHcCCCcccccchHHHHHHHhCC
Confidence 9999999999998 999999999999987 78899999999999999999999999999999999999999999999998
Q ss_pred ccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCCCCCCCCCcccChhhh
Q 010868 236 ISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYS 297 (498)
Q Consensus 236 i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~CpL~~~C~~~~ 297 (498)
.... +..++.+.++..+|.+.+.++|++||+||+.+|++++|+|+.|||++.|.++.
T Consensus 151 ~~~~-----~~~~~~~~l~~~lp~~~~~~~~~~li~~Gr~~C~~~~P~C~~Cpl~~~C~~~~ 207 (211)
T PRK10702 151 APGK-----NVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKE 207 (211)
T ss_pred CCCC-----CHHHHHHHHHHhCCchHHHHHHHHHHHHhHHHcCCCCCCCCCCcChhhcCccc
Confidence 6431 22355566677889999999999999999999999999999999999998753
No 8
>TIGR01083 nth endonuclease III. This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=100.00 E-value=3.9e-40 Score=314.27 Aligned_cols=187 Identities=25% Similarity=0.396 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHH
Q 010868 80 VKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEV 159 (498)
Q Consensus 80 ~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel 159 (498)
+..+.+.|.++|+.....++| +|||++||++||+|||+++++.+++.+|++.||||++|+++++++|
T Consensus 3 ~~~i~~~l~~~~~~~~~~~~~-------------~dpf~~Li~~ILsqqt~~~~~~~~~~~l~~~~pt~~~l~~~~~~~L 69 (191)
T TIGR01083 3 AQEILERLRKNYPHPTTELDY-------------NNPFELLVATILSAQATDKSVNKATKKLFEVYPTPQALAQAGLEEL 69 (191)
T ss_pred HHHHHHHHHHHCCCCCcccCC-------------CCHHHHHHHHHHHhhCcHHHHHHHHHHHHHHCCCHHHHHcCCHHHH
Confidence 457888999998753322323 3799999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhccc
Q 010868 160 NEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAIS 237 (498)
Q Consensus 160 ~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i~ 237 (498)
.++|+++|||+ ||++|+++|+.+.++ +|.+|+++++|++|||||+|||++||+|+||+|.++||+||+|++.|+|+..
T Consensus 70 ~~~ir~~G~~~~Ka~~i~~~a~~i~~~~~~~~~~~~~~L~~l~GIG~ktA~~ill~~~~~~~~~vD~~v~Ri~~r~g~~~ 149 (191)
T TIGR01083 70 EEYIKSIGLYRNKAKNIIALCRILVERYGGEVPEDREELVKLPGVGRKTANVVLNVAFGIPAIAVDTHVFRVSNRLGLSK 149 (191)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHcCCCCchHHHHHHhCCCCcHHHHHHHHHHHcCCCccccchhHHHHHHHcCCCC
Confidence 99999999998 999999999999987 7789999999999999999999999999999999999999999999998864
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCCCC
Q 010868 238 ANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNC 284 (498)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C 284 (498)
.. +.+++++.++.++|.+.+.+||++||+||+.+|++++|+|
T Consensus 150 ~~-----~~~~~~~~l~~~~p~~~~~~~h~~li~~G~~~C~~~~P~C 191 (191)
T TIGR01083 150 GK-----DPDKVEEELLKLIPREFWTKLHHWLILHGRYTCKARKPLC 191 (191)
T ss_pred CC-----CHHHHHHHHHHHCCchhHHHHHHHHHHHhHHhcCCCCCCC
Confidence 32 2345667788899999999999999999999999999999
No 9
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=100.00 E-value=1e-33 Score=273.66 Aligned_cols=182 Identities=17% Similarity=0.162 Sum_probs=149.7
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHh-------CCCHHHHHhC
Q 010868 82 KIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK-------WPTIHHLAKA 154 (498)
Q Consensus 82 ~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~-------fPt~~~La~a 154 (498)
.+.+.|.+.--....+.+|+.. .+||++||++||+|||++++|..++.+|+++ +|||++|+++
T Consensus 6 ~l~~~l~~~~~~~~~~~~WWp~----------~~~fevLV~aILsQqT~~~~v~~a~~~L~~~~~~~~~~~~t~e~L~~a 75 (218)
T PRK13913 6 ELLKALKSLDLLKNAPAWWWPN----------ALKFEALLGAVLTQNTKFEAVEKSLENLKNAFILENDDEINLKKIAYI 75 (218)
T ss_pred HHHHHHHhhhhhhcCCCCCCcC----------cCHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccccCCCHHHHHcC
Confidence 3555555533333344445542 4799999999999999999999999999884 6799999999
Q ss_pred CHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCC-----CCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhh
Q 010868 155 SLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDG-----FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIR 228 (498)
Q Consensus 155 ~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~-----~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~R 228 (498)
+.++|+++|+++|||+ ||++|+++|+.+.++.|. .|+++++|++|||||+||||+||+|++|+|+++||+|++|
T Consensus 76 ~~eeL~~~Irp~Gf~~~KA~~Lk~la~~i~~~~g~~~~~~~~~~re~Ll~l~GIG~kTAd~iLlya~~rp~fvVDty~~R 155 (218)
T PRK13913 76 EFSKLAECVRPSGFYNQKAKRLIDLSENILKDFGSFENFKQEVTREWLLDQKGIGKESADAILCYVCAKEVMVVDKYSYL 155 (218)
T ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCchhccCchHHHHHHcCCCccHHHHHHHHHHHcCCCccccchhHHH
Confidence 9999999999999999 999999999999987443 4678999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCChHHHHHHHHHHHhhc-----------CC-----CChHHHHHHHHHhcchhccC
Q 010868 229 VLARLKAISANPKDTSTVKNFWKLATQLV-----------DS-----CRPGDFNQSLMELGAVICTP 279 (498)
Q Consensus 229 vl~Rl~~i~~~~~~~~~~~~l~~~~~~l~-----------~~-----~~~~~~~~~l~~~G~~iC~~ 279 (498)
|++|+|+... ++. +++...+..+ |. ..+.+||..|++||+..|.-
T Consensus 156 v~~RlG~~~~---~y~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Halive~~k~~~~~ 216 (218)
T PRK13913 156 FLKKLGIEIE---DYD---ELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLEL 216 (218)
T ss_pred HHHHcCCCCC---CHH---HHHHHHHHhhhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999988532 233 3444445443 11 23789999999999999964
No 10
>KOG1921 consensus Endonuclease III [Replication, recombination and repair]
Probab=100.00 E-value=9e-34 Score=270.21 Aligned_cols=210 Identities=24% Similarity=0.383 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHHHhhCCCC-CCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhC-CCHHHHHhCC
Q 010868 78 KEVKKIRQSLLQWYDKNQRE-LPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW-PTIHHLAKAS 155 (498)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~-lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~f-Pt~~~La~a~ 155 (498)
+++..++....+-.+..|++ .|--.. +.....|++||+.+||.||.++....+..++.+.. -|++++.+++
T Consensus 46 ~~ir~mR~k~~APVD~mGc~~~~~~~~-------~pk~~RfqvLv~lmLSSQTKDevt~~Am~rL~~~~gLT~e~v~~~d 118 (286)
T KOG1921|consen 46 ERIRKMRSKIVAPVDTMGCSRIPSLKA-------DPKERRFQVLVGLMLSSQTKDEVTAAAMLRLKEYGGLTLEAVLKID 118 (286)
T ss_pred HHHHHHhhcccCCccccccccCccccC-------ChhhHhHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCCHHHHhccC
Confidence 55666666666666666653 333111 11345799999999999999999999999999988 7999999999
Q ss_pred HHHHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHHhcCC-cccccccchhhHHHh
Q 010868 156 LEEVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKE-VVPVVDGNVIRVLAR 232 (498)
Q Consensus 156 ~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~-p~~~VD~~v~Rvl~R 232 (498)
+..|.++|.++|||+ ||.||+.+|+.+.++ +|++|++.++|++|||||||+|..+|..|+|. ..+.||+||+|+.+|
T Consensus 119 e~~l~~LI~~VgFy~rKA~ylkkta~IL~d~f~gDIP~~v~dLlsLPGVGPKMa~L~m~~AWn~i~GI~VDtHVHRi~nr 198 (286)
T KOG1921|consen 119 EPTLNELIYPVGFYTRKAKYLKKTAKILQDKFDGDIPDTVEDLLSLPGVGPKMAHLTMQVAWNKIVGICVDTHVHRICNR 198 (286)
T ss_pred hHhHHhhhhhccchHHHHHHHHHHHHHHHHHhCCCCchhHHHHhcCCCCchHHHHHHHHHHhccceeEEeehHHHHHHHH
Confidence 999999999999998 899999999999998 89999999999999999999999999999998 578899999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCCCCCCCCC-cccChhhh
Q 010868 233 LKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPV-SDKCQAYS 297 (498)
Q Consensus 233 l~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~CpL-~~~C~~~~ 297 (498)
++|++...+ +..+.+..++.++|.+.|.++|..|+.||+.+|+|++|+|+.|-+ ++.|++.-
T Consensus 199 lgWv~~ktk---spE~TR~aLq~wLPk~lW~eIN~lLVGFGQ~iC~p~~prC~~C~~~~~~Cpss~ 261 (286)
T KOG1921|consen 199 LGWVDTKTK---SPEQTRVALQQWLPKSLWVEINHLLVGFGQTICTPRRPRCGLCLLSRDLCPSSF 261 (286)
T ss_pred hcccccccC---CHHHHHHHHHHhCcHHHHhhhhceeecccceeeecCCCCccccccCcccCchhh
Confidence 999985433 234556678889999999999999999999999999999999999 69999843
No 11
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=99.97 E-value=3.7e-30 Score=241.15 Aligned_cols=200 Identities=24% Similarity=0.372 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhC-CCHHHHHhCCH
Q 010868 78 KEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW-PTIHHLAKASL 156 (498)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~f-Pt~~~La~a~~ 156 (498)
..+..+.+.|...|+..+ |+.. .+-+++++++||.|+|++++|..+..++.... -++++|...+.
T Consensus 6 ~~~~~iy~~L~~~yg~q~----WWp~----------~~~~EiiigAILtQNT~WknvekAlenLk~~~~~~l~~I~~~~~ 71 (215)
T COG2231 6 ENITKIYKELLRLYGDQG----WWPA----------DNKDEIIIGAILTQNTSWKNVEKALENLKNEGILNLKKILKLDE 71 (215)
T ss_pred HHHHHHHHHHHHHcCCcc----CCCC----------CCchhHHHHHHHhccccHHHHHHHHHHHHHcccCCHHHHhcCCH
Confidence 456678888888887553 7764 34669999999999999999999999998765 48999999999
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHcCC---CCCC--chhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHH
Q 010868 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAEGD---GFPN--TVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVL 230 (498)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g---~~p~--~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl 230 (498)
++|.++|++.|||+ ||++|+++.+.++.... .+-+ .+++|++++|||+.|||+||+||+++|+|+||.+.+|++
T Consensus 72 ~~L~elIrpsGFYnqKa~rLk~l~k~l~~~~~~~~~~~~~~~R~~LL~iKGIG~ETaDsILlYa~~rp~FVvD~Yt~R~l 151 (215)
T COG2231 72 EELAELIRPSGFYNQKAKRLKALSKNLAKFFINLESFKSEVLREELLSIKGIGKETADSILLYALDRPVFVVDKYTRRLL 151 (215)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHccCCcchhhHHHHHHHHhcCcccchhHHHHHHH
Confidence 99999999999999 99999888888887522 2222 489999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCChHHHHHHHHHHHhhcCCC--ChHHHHHHHHHhcchhccCCCCCCCCCCCcccChhhh
Q 010868 231 ARLKAISANPKDTSTVKNFWKLATQLVDSC--RPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYS 297 (498)
Q Consensus 231 ~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~l~~~G~~iC~~~~P~C~~CpL~~~C~~~~ 297 (498)
.|+|++..+ ++. ++.++.+.-+|.+ .+.+||..++.||+.+|+. +|.|+.|||...|..++
T Consensus 152 ~rlg~i~~k--~yd---eik~~fe~~l~~~~~lyqe~HAlIv~~~K~f~~k-~~~~~~cpL~~~~~~~~ 214 (215)
T COG2231 152 SRLGGIEEK--KYD---EIKELFEENLPENLRLYQEFHALIVEHAKHFCKK-KPLCEKCPLKEKCKKYR 214 (215)
T ss_pred HHhcccccc--cHH---HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHccC-CcCCCCchHHHHHhhcc
Confidence 999998764 333 3444455545443 3689999999999999998 59999999999998764
No 12
>smart00478 ENDO3c endonuclease III. includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=99.96 E-value=2.1e-28 Score=223.98 Aligned_cols=147 Identities=33% Similarity=0.503 Sum_probs=136.6
Q ss_pred HhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCC
Q 010868 125 MLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGI 202 (498)
Q Consensus 125 l~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGI 202 (498)
|+|||+++++..++.+|.+.||||++|++++.++|.++|+++||++ ||++|+++|+.+.+. +|.+|+++++|++||||
T Consensus 1 l~qq~~~~~a~~~~~~l~~~~~~~~~l~~~~~~eL~~~l~~~g~~~~ka~~i~~~a~~~~~~~~~~~~~~~~~L~~l~GI 80 (149)
T smart00478 1 LSQQTSDEAVNKATERLFEKFPTPEDLAAADEEELEELIRPLGFYRRKAKYLIELARILVEEYGGEVPDDREELLKLPGV 80 (149)
T ss_pred CCCcccHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHCCCccHHHHHHHcCCCC
Confidence 6899999999999999999999999999999999999999999988 999999999999987 78899999999999999
Q ss_pred cHHHHHHHHHHhcCCcccccccchhhHHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcch
Q 010868 203 GNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAV 275 (498)
Q Consensus 203 G~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~ 275 (498)
|+|||++|++|++++++++||+||.|++.|+|+++..+ +.+.++..++.++|...|+.+|+.++++|+.
T Consensus 81 G~~tA~~~l~~~~~~~~~~~D~~v~r~~~rl~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~l~~g~~ 149 (149)
T smart00478 81 GRKTANAVLSFALGKPFIPVDTHVLRIAKRLGLVDKKS----TPEEVEKLLEKLLPKEDWRELNLLLIDFGRT 149 (149)
T ss_pred cHHHHHHHHHHHCCCCCCccchHHHHHHHHhCCCCCCC----CHHHHHHHHHHHCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999886432 2446788889999988899999999999973
No 13
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=99.95 E-value=9e-28 Score=221.75 Aligned_cols=153 Identities=37% Similarity=0.499 Sum_probs=138.4
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHHhC-CCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-CCCC---CC
Q 010868 117 YGVWVSEVMLQQTRVQTVIDYYNRWMTKW-PTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGF---PN 191 (498)
Q Consensus 117 ~~~lVs~Il~QqT~~~~v~~~~~~l~~~f-Pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~---p~ 191 (498)
|++||++||+|||+++++..++.+|.+.| |||++|+.++.++|.+++.++||.+||++|+++|+.+.++ .+.. ++
T Consensus 1 ~e~Li~~il~q~~s~~~a~~~~~~l~~~~gpt~~~l~~~~~~~l~~~~~~~G~~~kA~~i~~~a~~~~~~~~~~~~~~~~ 80 (158)
T cd00056 1 FEVLVSEILSQQTTDKAVNKAYERLFERYGPTPEALAAADEEELRELIRSLGYRRKAKYLKELARAIVEGFGGLVLDDPD 80 (158)
T ss_pred CHHHHHHHHHhcccHHHHHHHHHHHHHHhCCCHHHHHCCCHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCccCCCcc
Confidence 68999999999999999999999999999 9999999999999999999999444999999999999997 3333 78
Q ss_pred chhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 010868 192 TVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLME 271 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~ 271 (498)
.++.|++|||||+|||+++++|++|.++++||+||.|++.|+|+++..+ +.+++++.++.+.|......+|+.|++
T Consensus 81 ~~~~L~~l~GIG~~tA~~~l~~~~~~~~~pvD~~v~r~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (158)
T cd00056 81 AREELLALPGVGRKTANVVLLFALGPDAFPVDTHVRRVLKRLGLIPKKK----TPEELEELLEELLPKPYWGEANQALMD 156 (158)
T ss_pred cHHHHHcCCCCCHHHHHHHHHHHCCCCCCccchhHHHHHHHhCCCCCCC----CHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999889999999999999999874322 345688888999987778999999999
Q ss_pred hc
Q 010868 272 LG 273 (498)
Q Consensus 272 ~G 273 (498)
||
T Consensus 157 ~g 158 (158)
T cd00056 157 LG 158 (158)
T ss_pred cC
Confidence 87
No 14
>PRK01229 N-glycosylase/DNA lyase; Provisional
Probab=99.92 E-value=5.4e-24 Score=204.32 Aligned_cols=121 Identities=20% Similarity=0.235 Sum_probs=108.1
Q ss_pred cCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccC--cHH-HHHHHHHHHHH---HHHc-
Q 010868 113 EKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLG--YYR-RARFLLEGAKM---IVAE- 185 (498)
Q Consensus 113 ~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG--~~~-RA~~L~~~a~~---i~~~- 185 (498)
..|||++||++||+|||+++++..++.+| +++.+ +++.++|+++|+++| ||+ ||++|+++++. +.+.
T Consensus 34 ~~~~f~~Lv~~ILsqnT~~~~v~~a~~~L-----~~~~l-~~~~eeL~~~Ir~~Gygf~~~KAk~I~~~~~~~~~l~~~~ 107 (208)
T PRK01229 34 EEDLFSELSFCILTANSSAEGGIKAQKEI-----GDGFL-YLSEEELEEKLKEVGHRFYNKRAEYIVEARKLYGKLKEII 107 (208)
T ss_pred cCChHHHHHHHHhcCcCcHHHHHHHHHhc-----CHHHc-CCCHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999998 35667 899999999999995 999 99999999987 4333
Q ss_pred --CCCCCCchhhhh-cCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhcccCC
Q 010868 186 --GDGFPNTVSDLR-KVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISAN 239 (498)
Q Consensus 186 --~g~~p~~~~~L~-~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i~~~ 239 (498)
++++|+++++|+ +|||||++||++||.....+|+++||+||+|++.|+|+++..
T Consensus 108 ~~~~~~~~~R~~Ll~~lpGIG~KTAd~vL~~~~~~~~~iVDtHv~Ri~~RlG~~~~~ 164 (208)
T PRK01229 108 KADKDQFEAREFLVKNIKGIGYKEASHFLRNVGYEDLAILDRHILRFLKRYGLIEEI 164 (208)
T ss_pred hccCCchHHHHHHHHcCCCCcHHHHHHHHHHccCCCeeeeeHHHHHHHHHhCCCccc
Confidence 567899999999 999999999999997554589999999999999999998753
No 15
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg). All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily.
Probab=99.91 E-value=8.8e-24 Score=215.72 Aligned_cols=154 Identities=18% Similarity=0.276 Sum_probs=125.6
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHH---------------hCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHH
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMT---------------KWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEG 178 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~---------------~fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~ 178 (498)
+||||++|++|++||++++++..++.+|.+ .||||++|++++.++ .|+.+|+..||++|+++
T Consensus 117 ~d~fE~lv~~IlsQq~si~~a~~~~~rL~~~~G~~~~~~~g~~~~~FPtp~~La~~~~e~---~Lr~~G~g~Ra~~I~~~ 193 (310)
T TIGR00588 117 QDPFECLISFICSSNNNIARITRMVERLCQAFGPRLITLDGVTYHGFPSLHALTGPEAEA---HLRKLGLGYRARYIRET 193 (310)
T ss_pred CCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHhCCChHH---HHHHcCCHHHHHHHHHH
Confidence 489999999999999999999999999965 489999999976654 46778986699999999
Q ss_pred HHHHHHcC-CC----------CCCchhhhhcCCCCcHHHHHHHHHHhcCCc-ccccccchhhHHHhhhcccCCC-----C
Q 010868 179 AKMIVAEG-DG----------FPNTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVVDGNVIRVLARLKAISANP-----K 241 (498)
Q Consensus 179 a~~i~~~~-g~----------~p~~~~~L~~LpGIG~~TA~~il~~a~~~p-~~~VD~~v~Rvl~Rl~~i~~~~-----~ 241 (498)
|+.+.++. +. +++.+++|++|||||+|||+||++|++|+| ++|||+||+|++.|+++..... .
T Consensus 194 A~~i~~~~~~~~~l~~l~~~~~~~~~~~L~~l~GIG~~tAd~vll~~l~~~d~~PvD~~v~r~~~r~y~~~~~~~~~~~~ 273 (310)
T TIGR00588 194 ARALLEEQGGRAWLQQIRGASYEDAREALCELPGVGPKVADCICLMGLDKPQAVPVDVHVWRIANRDYPWHPKTSRAKGP 273 (310)
T ss_pred HHHHHhccCCchhHHhhccCChHHHHHHHHhCCCccHHHHHHHHHHhCCCCCceeecHHHHHHHHHHhcccccccccccC
Confidence 99999873 32 356789999999999999999999999997 6889999999999998764322 1
Q ss_pred ChHHHHHHHHHHHhhcCCCChHHHHHHHHHh
Q 010868 242 DTSTVKNFWKLATQLVDSCRPGDFNQSLMEL 272 (498)
Q Consensus 242 ~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~ 272 (498)
.....+++++.+...+.+ ++.|+|+++.+
T Consensus 274 ~~~~~~~i~~~~~~~~g~--~ag~aq~~lf~ 302 (310)
T TIGR00588 274 SPFARKELGNFFRSLWGP--YAGWAQAVLFS 302 (310)
T ss_pred ChhHHHHHHHHHHHHhcC--cchHHHHHHHH
Confidence 234556777777777763 66666665543
No 16
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=4.7e-21 Score=169.31 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=97.3
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|+||++||+.+++|+|+|+||||+++.+|++ ++++.||+.||+|+++. ..+.+..+.|.|+|+++.++
T Consensus 13 ~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~---~~~~~RE~~EE~g~~~~------~~~~~~~~~h~~~~~~~~~~ 83 (128)
T TIGR00586 13 NENGEIIITRRADGHMFAKLLEFPGGKEEGGETP---EQAVVRELEEEIGIPQH------FSEFEKLEYEFYPRHITLWF 83 (128)
T ss_pred CCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCH---HHHHHHHHHHHHCCcce------eeeEEEEEEEECCCcEEEEE
Confidence 5678999999999999999999999999988766 68899999999999876 55668889999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHH
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQ 472 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (498)
+|.+.. ..+ . +...+..+++|++++++.+++||++++++++.++
T Consensus 84 ~~~~~~-~~~-~-----~~~~~~~~~~W~~~~~l~~~~~p~~~~~~~~~~~ 127 (128)
T TIGR00586 84 WLLERW-EGG-P-----PGKEGQPEEWWVLVGLLADDFFPAANPVIIKLLR 127 (128)
T ss_pred EEEEEE-cCC-C-----cCcccccccEEeCHHHCCccCCCCCCHHHHHHHh
Confidence 998863 222 1 1123456789999999999999999999998765
No 17
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.85 E-value=8.1e-21 Score=169.89 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=101.4
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
.++|+||+.||+.++.++|+|+||||+++.+|++ ++|+.||+.||+|+++. ....++.+.|.|+|+.++++
T Consensus 12 ~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~---~~a~~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 82 (135)
T PRK10546 12 ERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQ---PQALIRELREELGIEAT------VGEYVASHQREVSGRRIHLH 82 (135)
T ss_pred ecCCEEEEEEccCCCCCCCcEECCcccCCCCCCH---HHHHHHHHHHHHCCccc------cceeEEEEEEecCCcEEEEE
Confidence 3578999999999999999999999999999866 68999999999999976 45667889999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhhc
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQK 477 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~~ 477 (498)
+|.+.. ..+ .+...++.+++|++++++.+++++++++++++.+.+..++
T Consensus 83 ~~~~~~-~~~------~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~ 131 (135)
T PRK10546 83 AWHVPD-FHG------ELQAHEHQALVWCTPEEALRYPLAPADIPLLEAFMALRAA 131 (135)
T ss_pred EEEEEE-ecC------cccccccceeEEcCHHHcccCCCCcCcHHHHHHHHHhhcc
Confidence 887753 333 1222457789999999999999999999999998876554
No 18
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=99.84 E-value=4.3e-21 Score=167.73 Aligned_cols=109 Identities=34% Similarity=0.499 Sum_probs=74.8
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|+||+.|||++|+||||||||..++++..+ .+++.+.+.+.+|+.+. ..+.+++++|+|||++++++
T Consensus 6 ~~~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~----~~~l~~~~~~~~~~~~~------~~~~~~~v~H~fSH~~~~~~ 75 (114)
T PF14815_consen 6 RSQGRVLLEKRPEKGLLAGLWEFPLIESDEEDD----EEELEEWLEEQLGLSIR------SVEPLGTVKHVFSHRRWTIH 75 (114)
T ss_dssp ETTSEEEEEE--SSSTTTT-EE--EEE-SSS-C----HHHHHHHTCCSSS-EEE------E-S-SEEEEEE-SSEEEEEE
T ss_pred EeCCEEEEEECCCCChhhcCcccCEeCccCCCC----HHHHHHHHHHHcCCChh------hheecCcEEEEccceEEEEE
Confidence 678999999999999999999999998874432 46666667667777654 55789999999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHH
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYT 469 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~ 469 (498)
+|.+.+ ..... ....+++|++.+++.+++||++++|+++
T Consensus 76 ~~~~~~--~~~~~-------~~~~~~~W~~~~~l~~~~~p~~~~kil~ 114 (114)
T PF14815_consen 76 VYEVEV--SADPP-------AEPEEGQWVSLEELDQYPLPTPMRKILE 114 (114)
T ss_dssp EEEEEE--E-SS-----------TTEEEEEGGGGGGS---HHHHHHH-
T ss_pred EEEEEe--cCCCC-------CCCCCcEEEEHHHHhhCCCCHHHHHHhC
Confidence 999875 32110 1346789999999999999999999985
No 19
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.84 E-value=2e-20 Score=164.90 Aligned_cols=116 Identities=14% Similarity=0.195 Sum_probs=96.9
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|+||++||+.+++|+|+|+||||+++++|+. ++++.||+.||+|+++. ....++.+.|.|+|..++++
T Consensus 13 ~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~---~~a~~Re~~EE~gl~~~------~~~~~~~~~~~~~~~~~~~~ 83 (129)
T PRK10776 13 NPNNEIFITRRAADAHMAGKWEFPGGKIEAGETP---EQALIRELQEEVGITVQ------HATLFEKLEYEFPDRHITLW 83 (129)
T ss_pred CCCCEEEEEEecCCCCCCCeEECCceecCCCCCH---HHHHHHHHHHHHCCcee------cceEEEEEEeeCCCcEEEEE
Confidence 5578999999999999999999999999988765 68899999999999865 34567788999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHh
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQK 473 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (498)
+|.+.. ..+. +...+..+++|++.+++..++||++++++++.+.+
T Consensus 84 ~~~~~~-~~~~------~~~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~~~ 128 (129)
T PRK10776 84 FWLVES-WEGE------PWGKEGQPGRWVSQVALNADEFPPANEPIIAKLKA 128 (129)
T ss_pred EEEEEE-ECCc------cCCccCCccEEecHHHCccCCCCcccHHHHHHHHh
Confidence 887753 3221 12245677899999999999999999999998754
No 20
>TIGR03252 uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).
Probab=99.84 E-value=1.9e-20 Score=174.56 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=94.2
Q ss_pred cCChHHHHHHHHHhhhccHHHHHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhcc----CcHH-HHHHHHHHHHHHHHc
Q 010868 113 EKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW--PTIHHLAKASLEEVNEMWAGL----GYYR-RARFLLEGAKMIVAE 185 (498)
Q Consensus 113 ~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~f--Pt~~~La~a~~eel~~~i~~l----G~~~-RA~~L~~~a~~i~~~ 185 (498)
..+||++||++||+|||++++|..++.+++.++ +||++|++++.++|+++|++. |||+ ||++|+++|+.|+++
T Consensus 15 ~~~pFelLVa~ILSQqTtd~nv~kA~~~L~~~~g~~tp~~La~a~~eeL~~lI~~~pal~Gfy~~KAk~Lk~~a~~iie~ 94 (177)
T TIGR03252 15 SSDPFALLTGMLLDQQVPMERAFAGPHKIARRMGSLDAEDIAKYDPQAFVALFSERPAVHRFPGSMAKRVQALAQYVVDT 94 (177)
T ss_pred cCChHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCHHHHHcCCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999998765 699999999999999999866 9999 999999999999987
Q ss_pred -CCCC--------CCc---hhhhhcCCCCcHHHHHHHHHHhc
Q 010868 186 -GDGF--------PNT---VSDLRKVPGIGNYTAGAIASIAF 215 (498)
Q Consensus 186 -~g~~--------p~~---~~~L~~LpGIG~~TA~~il~~a~ 215 (498)
+|++ |++ +++|++|||||++||++||.+.-
T Consensus 95 y~G~v~~L~~~~~p~t~~lre~Ll~LpGVG~KTAnvVL~~l~ 136 (177)
T TIGR03252 95 YDGDATAVWTEGDPDGKELLRRLKALPGFGKQKAKIFLALLG 136 (177)
T ss_pred hCCChhhhhcccCCCcHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7775 776 68999999999999999999643
No 21
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.83 E-value=2.9e-20 Score=161.43 Aligned_cols=106 Identities=38% Similarity=0.542 Sum_probs=86.1
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~ 422 (498)
++|++||+|||++|+|+||||||+++++.+++. ++++.+++.+++++. ...+++++|+|||++|++++
T Consensus 12 ~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~~H~fth~~~~~~~ 79 (118)
T cd03431 12 NDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADG---EEALLSALKKALRLS---------LEPLGTVKHTFTHFRLTLHV 79 (118)
T ss_pred cCCeEEEEECCCCCCCCcceeCCCccccCCcCH---HHHHHHHHHHHhCcc---------cccceeEEEecCCeEEEEEE
Confidence 468999999999999999999999998876544 678888887776531 23478999999999999999
Q ss_pred EEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHH
Q 010868 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTM 470 (498)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~ 470 (498)
|.|.+ ..+ . .+..+++|++.+++.+++||++++|+++.
T Consensus 80 ~~~~~-~~~-~--------~~~~~~~W~~~eel~~~~~p~~~~kil~~ 117 (118)
T cd03431 80 YLARL-EGD-L--------LAPDEGRWVPLEELDEYALPTVMRKILEL 117 (118)
T ss_pred EEEEE-eCC-C--------cCccccEEccHHHHhhCCCCHHHHHHHHh
Confidence 98864 222 0 13456899999999999999999999865
No 22
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=99.77 E-value=1.7e-18 Score=174.54 Aligned_cols=138 Identities=21% Similarity=0.289 Sum_probs=112.7
Q ss_pred cCChHHHHHHHHHhhhccHHHHHHHHHHHHHh----------CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHH
Q 010868 113 EKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK----------WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKM 181 (498)
Q Consensus 113 ~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~----------fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~ 181 (498)
..|||+.+|++|++||.+++.+.+++.+|.+. ||||++|++++++.+ +.+|+.. ||++|+++|+.
T Consensus 102 ~~d~fe~lv~aI~~QqvS~~~A~~i~~rl~~~~g~~~~~~~~fptpe~l~~~~~~~l----~~~g~s~~Ka~yi~~~A~~ 177 (285)
T COG0122 102 APDPFEALVRAILSQQVSVAAAAKIWARLVSLYGNALEIYHSFPTPEQLAAADEEAL----RRCGLSGRKAEYIISLARA 177 (285)
T ss_pred CCCHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhCCccccccCCCCHHHHHhcCHHHH----HHhCCcHHHHHHHHHHHHH
Confidence 47999999999999999999999999999764 799999999999886 5788887 99999999999
Q ss_pred HHHcCCC--------CCCchhhhhcCCCCcHHHHHHHHHHhcCCc-cc-ccccchhhHHHhhhcccCCCCChHHHHHHHH
Q 010868 182 IVAEGDG--------FPNTVSDLRKVPGIGNYTAGAIASIAFKEV-VP-VVDGNVIRVLARLKAISANPKDTSTVKNFWK 251 (498)
Q Consensus 182 i~~~~g~--------~p~~~~~L~~LpGIG~~TA~~il~~a~~~p-~~-~VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~ 251 (498)
+.++.-+ ..+.++.|++|+|||+|||+++|+|++|++ ++ +.|.+++|.+++++..+..+ +.+.+..
T Consensus 178 ~~~g~~~~~~l~~~~~e~a~e~L~~i~GIG~WTAe~~llf~lgr~dvfP~~D~~lr~~~~~~~~~~~~~----~~~~~~~ 253 (285)
T COG0122 178 AAEGELDLSELKPLSDEEAIEELTALKGIGPWTAEMFLLFGLGRPDVFPADDLGLRRAIKKLYRLPTRP----TEKEVRE 253 (285)
T ss_pred HHcCCccHHHhccCCHHHHHHHHHcCCCcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhcCCCCc----hHHHHHH
Confidence 9985211 124689999999999999999999999986 44 49999999999999433322 3334455
Q ss_pred HHHhhcC
Q 010868 252 LATQLVD 258 (498)
Q Consensus 252 ~~~~l~~ 258 (498)
.++.+-|
T Consensus 254 ~~e~w~p 260 (285)
T COG0122 254 LAERWGP 260 (285)
T ss_pred HHhcccC
Confidence 5555433
No 23
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=99.77 E-value=2.1e-18 Score=174.03 Aligned_cols=138 Identities=20% Similarity=0.158 Sum_probs=108.6
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHh-------------CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHH
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK-------------WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGA 179 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~-------------fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a 179 (498)
.||||.+|++|++||.++..+.....++.++ ||||++|++++.++| +.+|+++ ||++|+++|
T Consensus 111 ~d~fE~lv~aIigQqisv~~a~~~~~rlv~~~G~~l~~~~~~~~FPtpe~La~~~~~eL----~~~Gl~~~Ra~~L~~lA 186 (283)
T PRK10308 111 VDAFEQGVRAILGQLVSVAMAAKLTAKVAQLYGERLDDFPEYVCFPTPERLAAADPQAL----KALGMPLKRAEALIHLA 186 (283)
T ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCccccCCCCccCCCCHHHHHcCCHHHH----HHCCCCHHHHHHHHHHH
Confidence 5899999999999999999999988887653 799999999999986 5689987 999999999
Q ss_pred HHHHHc--CCC----CCCchhhhhcCCCCcHHHHHHHHHHhcCCc-cc-ccccchhhHHHhhhcccCCCCChHHHHHHHH
Q 010868 180 KMIVAE--GDG----FPNTVSDLRKVPGIGNYTAGAIASIAFKEV-VP-VVDGNVIRVLARLKAISANPKDTSTVKNFWK 251 (498)
Q Consensus 180 ~~i~~~--~g~----~p~~~~~L~~LpGIG~~TA~~il~~a~~~p-~~-~VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~ 251 (498)
+.+.++ ... ..+.+++|++|||||+|||++|++|++|+| ++ ++|.+++|.+ .. . +.+++.+
T Consensus 187 ~~i~~g~l~l~~~~~~~~~~~~L~~LpGIGpwTA~~vllr~lg~~D~fp~~D~~l~~~~---~~----~----~~~~~~~ 255 (283)
T PRK10308 187 NAALEGTLPLTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRF---PG----M----TPAQIRR 255 (283)
T ss_pred HHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCCCCcccHHHHHhc---cc----C----CHHHHHH
Confidence 999984 111 123578999999999999999999999996 44 8999999854 21 1 2345666
Q ss_pred HHHhhcCCCChHHHH
Q 010868 252 LATQLVDSCRPGDFN 266 (498)
Q Consensus 252 ~~~~l~~~~~~~~~~ 266 (498)
.++.+-|-..+..+|
T Consensus 256 ~a~~w~P~rsya~~~ 270 (283)
T PRK10308 256 YAERWKPWRSYALLH 270 (283)
T ss_pred HHHhcCCHHHHHHHH
Confidence 666654433333333
No 24
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.75 E-value=9.1e-18 Score=146.12 Aligned_cols=115 Identities=21% Similarity=0.310 Sum_probs=96.3
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|++|+.||+.+++++|+|+||||.++.+|+. ++++.||+.||+|+++. ..+.++.+.|.|+|.++.++
T Consensus 10 ~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~---~~~a~Re~~EE~g~~~~------~~~~~~~~~~~~~~~~~~~~ 80 (124)
T cd03425 10 DDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETP---EQALVRELREELGIEVE------VGELLATVEHDYPDKRVTLH 80 (124)
T ss_pred CCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCH---HHHHHHHHHHhhCcEEe------ccceEEEEEeeCCCCeEEEE
Confidence 5568999999998889999999999999988766 78889999999999875 44678899999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHH
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQ 472 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (498)
+|.+.+ ..+. ....+..++.|++++++.+++||++++++++.|+
T Consensus 81 ~~~~~~-~~~~------~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 124 (124)
T cd03425 81 VFLVEL-WSGE------PQLLEHQELRWVPPEELDDLDFPPADVPIVAALQ 124 (124)
T ss_pred EEEEee-eCCC------cccccCceEEEeeHHHcccCCCCcccHHHHHhhC
Confidence 988763 2221 1124567899999999999999999999998763
No 25
>PRK08999 hypothetical protein; Provisional
Probab=99.74 E-value=9.4e-18 Score=171.39 Aligned_cols=124 Identities=17% Similarity=0.277 Sum_probs=103.1
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|+||+.||+.+++|+|+|+||||+++.+|+. .+++.||+.||+|+.+. ....+.++.|.|+|..++++
T Consensus 14 ~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~---~~aa~RE~~EE~Gl~~~------~~~~l~~~~h~~~~~~~~i~ 84 (312)
T PRK08999 14 DADGRILLARRPEGKHQGGLWEFPGGKVEPGETV---EQALARELQEELGIEVT------AARPLITVRHDYPDKRVRLD 84 (312)
T ss_pred CCCCeEEEEEecCCCCCCCeEECCccCCCCCCCH---HHHHHHHHHHHhCCcee------cceeEEEEEEEcCCCeEEEE
Confidence 5578999999999999999999999999988766 68999999999999875 44567889999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhhccccc
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQKRLTT 481 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~~~~~~ 481 (498)
+|.+.. ..+ .+...++.+++|++.+++.+++||++++++++.+.-...+.+|-
T Consensus 85 ~y~~~~-~~~------~~~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l~lp~ly~it~ 137 (312)
T PRK08999 85 VRRVTA-WQG------EPHGREGQPLAWVAPDELAVYPFPPANQPIVRALRLPDTYLITP 137 (312)
T ss_pred EEEEEE-ecC------cccCccCCccEEecHHHcccCCCCcchHHHHHHhcCCCEEEEEC
Confidence 998763 333 12234677899999999999999999999999986655555554
No 26
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=99.69 E-value=1.5e-16 Score=137.71 Aligned_cols=104 Identities=33% Similarity=0.474 Sum_probs=86.3
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHh--CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhh
Q 010868 121 VSEVMLQQTRVQTVIDYYNRWMTK--WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLR 197 (498)
Q Consensus 121 Vs~Il~QqT~~~~v~~~~~~l~~~--fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~ 197 (498)
|++||+|||+++++.+++.+|.++ ||||++|+++++++|.++|+++||++ ||++|+++|+.++
T Consensus 1 V~~Il~qq~s~~~a~~~~~~l~~~~g~pt~~~l~~~~~~el~~~i~~~G~~~~ka~~i~~~a~~~~-------------- 66 (108)
T PF00730_consen 1 VRAILSQQTSIKAARKIYRRLFERYGFPTPEALAEASEEELRELIRPLGFSRRKAKYIIELARAIL-------------- 66 (108)
T ss_dssp HHHHHCTTS-HHHHHHHHHHHHHHHSCSSHHHHHCSHHHHHHHHHTTSTSHHHHHHHHHHHHHHHH--------------
T ss_pred CeeeecCcCcHHHHHHHHHHHHHHhcCCCHHHHHhCCHHHHHHHhhccCCCHHHHHHHHHHHHHhh--------------
Confidence 789999999999999999999999 59999999999999999999999997 9999999999998
Q ss_pred cCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhcccCCCCChHHHHHHHHHHHhhcC
Q 010868 198 KVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVD 258 (498)
Q Consensus 198 ~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~ 258 (498)
++..+++++|+|+.|++.|+++++.+++. +++.+.+++.++
T Consensus 67 ----------------~~~d~~~~~D~~v~r~~~r~~~~~~~~~~----~~~~~~~~e~~~ 107 (108)
T PF00730_consen 67 ----------------GRPDPFPPVDTHVRRVLQRLGGIPEKKTK----EETEKKLEELWP 107 (108)
T ss_dssp ----------------C-SSSS-TTSHHHHHHHHHHTSSSSSTTH----HHHHHHHHHHGT
T ss_pred ----------------hcccceecCcHHHHHHHHHHcCCCCCCCH----HHHHHHHHhhCc
Confidence 33336899999999999999998765332 334444444444
No 27
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Probab=99.68 E-value=7.1e-17 Score=157.50 Aligned_cols=121 Identities=18% Similarity=0.336 Sum_probs=107.7
Q ss_pred hhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHh---------------CCCHHHHHhCCHHHHHHHHhccCcHHHHHH
Q 010868 110 EEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK---------------WPTIHHLAKASLEEVNEMWAGLGYYRRARF 174 (498)
Q Consensus 110 ~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~---------------fPt~~~La~a~~eel~~~i~~lG~~~RA~~ 174 (498)
+.+.+||++.|++.|.|++.+.+++..+..+|... |||.++|+. ++++.-+|.+||..||||
T Consensus 111 RlLrQdP~E~lfSFiCSSNNNIaRIT~Mve~fc~~fG~~i~~~dg~~~h~FPsl~~L~g---~~~Ea~LR~~gfGYRAkY 187 (323)
T KOG2875|consen 111 RLLRQDPIECLFSFICSSNNNIARITGMVERFCQAFGPRIIQLDGVDYHGFPSLQALAG---PEVEAELRKLGFGYRAKY 187 (323)
T ss_pred HHHhcCcHHHHHHHHhcCCCcHHHHHHHHHHHHHhhCcceEeecCcccccCccHHHhcC---cHhHHHHHHcCcchhHHH
Confidence 55779999999999999999999999998888653 899999997 677778899999889999
Q ss_pred HHHHHHHHHHcCCC-----------CCCchhhhhcCCCCcHHHHHHHHHHhcCCc-ccccccchhhHHHhh
Q 010868 175 LLEGAKMIVAEGDG-----------FPNTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVVDGNVIRVLARL 233 (498)
Q Consensus 175 L~~~a~~i~~~~g~-----------~p~~~~~L~~LpGIG~~TA~~il~~a~~~p-~~~VD~~v~Rvl~Rl 233 (498)
|...|+.|.++.|. +.+.++.|..|||||+|+||||++++++.. +++||+||.|++.-+
T Consensus 188 I~~ta~~l~~~~g~~~wLqsl~~~~yeear~~L~~lpGVG~KVADCI~Lm~l~~~~~VPVDvHi~ria~~y 258 (323)
T KOG2875|consen 188 ISATARALQEKQGGLAWLQSLRKSSYEEAREALCSLPGVGPKVADCICLMSLDKLSAVPVDVHIWRIAQDY 258 (323)
T ss_pred HHHHHHHHHHhcccchHHHHHhcccHHHHHHHHhcCCCCcchHhhhhhhhhcCCCCcccchhhHHHHhhcc
Confidence 99999999998443 346889999999999999999999999984 889999999999944
No 28
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.56 E-value=2.1e-14 Score=129.90 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=79.5
Q ss_pred cCCCeEEEEecCC-CCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccc-cEEEEcCCeE--
Q 010868 342 QPDGVFILVKRRD-EGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVG-EFVHIFSHIR-- 417 (498)
Q Consensus 342 ~~~gkvLI~KRp~-~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~-~v~H~fsH~~-- 417 (498)
.++|+||+.||+. ++.++|+|+||||+++.||++ ++|+.||+.||+|+++.... ........ ...|.|.+..
T Consensus 12 ~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (141)
T PRK15472 12 QNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERI---EEALRREIREELGEQLLLTE-ITPWTFRDDIRTKTYADGRKE 87 (141)
T ss_pred ecCCEEEEEEecccCCCCCCceeCCcccCCCCCCH---HHHHHHHHHHHHCCceeeee-eccccccccceeEEecCCCce
Confidence 3578999999987 468999999999999999876 89999999999999764100 00000001 1134454321
Q ss_pred -EE-E-EEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHH
Q 010868 418 -LK-V-HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTM 470 (498)
Q Consensus 418 -l~-l-~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~ 470 (498)
+. + .+|.|. ..++.. ....|+.+++|+++++|.+++++++++.++..
T Consensus 88 ~~~~~~~~~~~~--~~~~~~----~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~~ 137 (141)
T PRK15472 88 EIYMIYLIFDCV--SANRDV----KINEEFQDYAWVKPEDLVHYDLNVATRKTLRL 137 (141)
T ss_pred eEEEEEEEEEee--cCCCcc----cCChhhheEEEccHHHhccccccHHHHHHHHH
Confidence 11 1 123332 111111 12357889999999999999999999998864
No 29
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair]
Probab=99.52 E-value=2.3e-14 Score=135.76 Aligned_cols=122 Identities=20% Similarity=0.347 Sum_probs=107.0
Q ss_pred cCChHHHHHHHHHhhhccHHHHHHHHHHHHHh------CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHc
Q 010868 113 EKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK------WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAE 185 (498)
Q Consensus 113 ~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~------fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~ 185 (498)
.+.||+-|+++|++||.+.+++..+|.||... ||+|+.+..++.+++ +.+||+. |+.+|+.+|....++
T Consensus 72 ~q~Pf~~LiraIlsQQLs~kAansI~~Rfvsl~~g~~~~~~pe~i~~~~~~~l----rkcG~S~rK~~yLh~lA~~~~ng 147 (254)
T KOG1918|consen 72 TQTPFERLIRAILSQQLSGKAANSIYNRFVSLCGGAEKFPTPEFIDPLDCEEL----RKCGFSKRKASYLHSLAEAYTNG 147 (254)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCchhcCcCCHHHH----HHhCcchhhHHHHHHHHHHHhcC
Confidence 47899999999999999999999999999864 899999999999996 7789997 899999999998874
Q ss_pred CCCCCC-----------chhhhhcCCCCcHHHHHHHHHHhcCCc--ccccccchhhHHHhhhcccCCC
Q 010868 186 GDGFPN-----------TVSDLRKVPGIGNYTAGAIASIAFKEV--VPVVDGNVIRVLARLKAISANP 240 (498)
Q Consensus 186 ~g~~p~-----------~~~~L~~LpGIG~~TA~~il~~a~~~p--~~~VD~~v~Rvl~Rl~~i~~~~ 240 (498)
.+|. .++.|..++|||+||+.+++.|+++++ .++-|..|++-++.+++...-|
T Consensus 148 --~I~s~~~i~~mseEeL~~~LT~VKGIg~Wtv~MflIfsL~R~DVmp~dDlgir~g~k~l~gl~~~p 213 (254)
T KOG1918|consen 148 --YIPSKSGIEKMSEEELIERLTNVKGIGRWTVEMFLIFSLHRPDVMPADDLGIRNGVKKLLGLKPLP 213 (254)
T ss_pred --CCCchHHHhhcCHHHHHHHHHhccCccceeeeeeeeeccCCCcccCchhhhHHHHHHHHhCCCCCC
Confidence 3542 346688999999999999999999997 4668899999999999887544
No 30
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.52 E-value=8e-14 Score=129.49 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=84.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC------
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH------ 415 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH------ 415 (498)
+.+|+||+.||.. +..+|+|+||||+++.||+. ++|+.||++||+|+++.. .+...++...|.|+.
T Consensus 26 ~~~g~VLL~kR~~-~~~~g~W~lPGG~VE~GEt~---~~Aa~REl~EEtGl~v~~----~~~~~~~~~~~~~~~~~~~~~ 97 (159)
T PRK15434 26 NSRGEFLLGKRTN-RPAQGYWFVPGGRVQKDETL---EAAFERLTMAELGLRLPI----TAGQFYGVWQHFYDDNFSGTD 97 (159)
T ss_pred CCCCEEEEEEccC-CCCCCcEECCceecCCCCCH---HHHHHHHHHHHHCCcccc----ccceEEEEEEeecccccCCCc
Confidence 4578999999985 45789999999999999877 899999999999998641 023455555566642
Q ss_pred --eEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC-CCChHHHHHHHH
Q 010868 416 --IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM-GLTSGVRKVYTM 470 (498)
Q Consensus 416 --~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~-~fp~a~~kil~~ 470 (498)
.++.+.+|.+++ ..+ .. .....++.+++|++++++..+ .+.+.++.++.+
T Consensus 98 ~~~~~i~~~f~~~~-~~g-~~---~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~ 150 (159)
T PRK15434 98 FTTHYVVLGFRLRV-AEE-DL---LLPDEQHDDYRWLTPDALLASDNVHANSRAYFLA 150 (159)
T ss_pred cceEEEEEEEEEEe-cCC-cc---cCChHHeeEEEEEeHHHhhhccccCHHHHHHhcc
Confidence 245556677763 233 11 122347889999999999886 788888877754
No 31
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=8e-14 Score=122.37 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=78.8
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccc---cccEEEEcC----
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILRED---VGEFVHIFS---- 414 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~---l~~v~H~fs---- 414 (498)
+.+|++|+.||+.. |+|+||||.++.+|+. ++|+.||+.||+|+++. ..+. +....|.|+
T Consensus 11 ~~~~~vLl~~r~~~----~~w~lPgG~v~~~E~~---~~aa~REl~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 77 (129)
T cd04676 11 DDEGRVLLIRRSDN----GLWALPGGAVEPGESP---ADTAVREVREETGLDVE------VTGLVGIYTGPVHVVTYPNG 77 (129)
T ss_pred CCCCeEEEEEecCC----CcEECCeeccCCCCCH---HHHHHHHHHHHhCceeE------eeEEEEEeecccceeecCCC
Confidence 55689999999865 8999999999999876 79999999999999875 2233 223445554
Q ss_pred --CeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHH
Q 010868 415 --HIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYT 469 (498)
Q Consensus 415 --H~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~ 469 (498)
|..+.+. |.+.+ .++.. .....+..+++|++++++.++++|++++++++
T Consensus 78 ~~~~~~~~~-~~~~~--~~~~~---~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~ 128 (129)
T cd04676 78 DVRQYLDIT-FRCRV--VGGEL---RVGDDESLDVAWFDPDGLPPLLMHPSMRLRID 128 (129)
T ss_pred CcEEEEEEE-EEEEe--eCCee---cCCCCceeEEEEEChhhCccccCCHhHHHHhc
Confidence 4444333 33432 22111 12335677899999999999999999999885
No 32
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.48 E-value=1.9e-13 Score=122.49 Aligned_cols=116 Identities=19% Similarity=0.115 Sum_probs=90.9
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC--eEEEE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH--IRLKV 420 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH--~~l~l 420 (498)
.+|+||+.+|..+. ..|.|+||||.++.+|+. .+|+.||+.||.|+++. ..+.++.+.+.++. .+..+
T Consensus 10 ~~~~vLL~~r~~~~-~~~~w~~PgG~ve~gEs~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd03427 10 DPDKVLLLNRKKGP-GWGGWNGPGGKVEPGETP---EECAIRELKEETGLTID------NLKLVGIIKFPFPGEEERYGV 79 (137)
T ss_pred ECCEEEEEEecCCC-CCCeEeCCceeCCCCCCH---HHHHHHHHHHhhCeEee------cceEEEEEEEEcCCCCcEEEE
Confidence 35899999998766 899999999999999866 89999999999999876 45566777766664 55666
Q ss_pred EEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhh
Q 010868 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKF 474 (498)
Q Consensus 421 ~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~ 474 (498)
++|.+.. ..+.. ....+..+.+|++.+++.++++++.++.+++.+.+.
T Consensus 80 ~~f~~~~-~~~~~-----~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 127 (137)
T cd03427 80 FVFLATE-FEGEP-----LKESEEGILDWFDIDDLPLLPMWPGDREWLPLMLEK 127 (137)
T ss_pred EEEEECC-ccccc-----CCCCccccceEEcHhhcccccCCCCcHHHHHHHhCC
Confidence 7777653 22211 113455678999999999999999999999988754
No 33
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.48 E-value=2.5e-13 Score=120.13 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=78.9
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC-----Ce
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS-----HI 416 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs-----H~ 416 (498)
+.+|+||+.||.. ++|+|+||||+++.+|++ ++|+.||++||+|+++. ....+....+.|+ +.
T Consensus 11 ~~~~~iLL~r~~~---~~~~w~lPGG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 78 (125)
T cd04696 11 APDGRILLVRTTK---WRGLWGVPGGKVEWGETL---EEALKREFREETGLKLR------DIKFAMVQEAIFSEEFHKPA 78 (125)
T ss_pred CCCCCEEEEEccC---CCCcEeCCceeccCCCCH---HHHHHHHHHHHhCCccc------ccceEEEEEEeccCCCCCcc
Confidence 5578999999853 579999999999999876 89999999999999876 3333333344442 22
Q ss_pred EEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHH
Q 010868 417 RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYT 469 (498)
Q Consensus 417 ~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~ 469 (498)
+..+.+|.+.. .+... ....++.+++|++.+++.++++++++..+++
T Consensus 79 ~~~~~~~~~~~--~~~~~----~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~ 125 (125)
T cd04696 79 HFVLFDFFART--DGTEV----TPNEEIVEWEWVTPEEALDYPLNSFTRLLLE 125 (125)
T ss_pred EEEEEEEEEEe--cCCcc----cCCcccceeEEECHHHHhcCCCCHHHHHHhC
Confidence 33334455542 22111 1224778899999999999999999988763
No 34
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=1.8e-13 Score=120.85 Aligned_cols=105 Identities=23% Similarity=0.231 Sum_probs=74.0
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|+||+.||..++ .|+|+||||+++.+|+. ++|+.||+.||+|+++. +...++.+.+ .+. ..+
T Consensus 9 ~~~~~vLL~~r~~~~--~~~w~lPGG~ve~gEs~---~~a~~REl~EEtGl~~~------~~~~~~~~~~--~~~--~~~ 73 (121)
T cd04669 9 NDQGEILLIRRIKPG--KTYYVFPGGGIEEGETP---EEAAKREALEELGLDVR------VEEIFLIVNQ--NGR--TEH 73 (121)
T ss_pred eCCCEEEEEEEecCC--CCcEECCceeccCCCCH---HHHHHHHHHHhhCeeEe------eeeEEEEEee--CCc--EEE
Confidence 456899999998765 68999999999999876 89999999999999875 4344443332 343 457
Q ss_pred EEEEEEEEeCCccccc--c---cccCCCCceeeecCCCcCCCCCCh
Q 010868 422 VELLVLCIKGGIDKWV--E---KQDKGTLSWKCVDGGTLASMGLTS 462 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~--~---~~~~e~~~~~Wv~~~eL~~~~fp~ 462 (498)
+|.|.. +.|...... + ....++..++|++.++|..++|.+
T Consensus 74 ~f~~~~-~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 74 YFLARV-ISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred EEEEEE-ECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence 788864 443211100 0 012234568999999999999876
No 35
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=7e-13 Score=116.85 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=74.1
Q ss_pred cCCCeEEEEecCCCCC-CCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccc-cccEEEEcCC-eEE
Q 010868 342 QPDGVFILVKRRDEGL-LAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILRED-VGEFVHIFSH-IRL 418 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gl-laGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~-l~~v~H~fsH-~~l 418 (498)
+.+|+||+.||+..+. ++|+|+||||.++.+|++ .+|+.||+.||.|+++. .... ...+.|.++. .+.
T Consensus 10 ~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~ 80 (129)
T cd04699 10 KDVGRILILKRSKDERTAPGKWELPGGKVEEGETF---EEALKREVYEETGLTVT------PFLRYPSTVTHEDSGVYNV 80 (129)
T ss_pred CCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCH---HHHHHHHHHHhhCcEEE------eeeeeeEEEEEcCCCEEEE
Confidence 4458999999998775 599999999999999876 78999999999999875 2232 2456777663 233
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCC
Q 010868 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT 461 (498)
Q Consensus 419 ~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp 461 (498)
..++|.+.. ..+ . .....+..+++|++.+++..+.+|
T Consensus 81 ~~~~~~~~~-~~~-~----~~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 81 IYLVFVCEA-LSG-A----VKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred EEEEEEeee-cCC-c----ccCChhheEEEEecHHHhhhhhcc
Confidence 334455532 221 1 112346678999999998766655
No 36
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.41 E-value=1.4e-12 Score=118.99 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=76.1
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccc--cccccEEEEcCCe---
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILR--EDVGEFVHIFSHI--- 416 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~--~~l~~v~H~fsH~--- 416 (498)
+.+|+||+.||... ...|+|+||||.++.+|+. ++|+.||+.||+|+++. .. +.++.+.|.|++.
T Consensus 21 ~~~g~vLl~~R~~~-p~~g~w~lPGG~ve~gEs~---~~aa~RE~~EE~Gl~v~------~~~~~~l~~~~~~~~~~~~~ 90 (144)
T cd03430 21 NEDGQYLLGKRTNR-PAQGYWFVPGGRIRKNETL---TEAFERIAKDELGLEFL------ISDAELLGVFEHFYDDNFFG 90 (144)
T ss_pred eCCCeEEEEEccCC-CCCCcEECCCceecCCCCH---HHHHHHHHHHHHCCCcc------cccceEEEEEEEEecccccc
Confidence 56789999999754 5789999999999999866 89999999999999876 34 5666777765421
Q ss_pred -----EEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCC
Q 010868 417 -----RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG 459 (498)
Q Consensus 417 -----~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~ 459 (498)
+....+|.|.+ ..+.. .....++.+++|++.+++....
T Consensus 91 ~~~~~~~~~~~~~~~~-~~~~~----~~~~~e~~~~~W~~~~el~~~~ 133 (144)
T cd03430 91 DDFSTHYVVLGYVLKL-SSNEL----LLPDEQHSEYQWLTSDELLADD 133 (144)
T ss_pred CCCccEEEEEEEEEEE-cCCcc----cCCchhccEeEEecHHHHhcCC
Confidence 34455666653 23311 1234578899999999998753
No 37
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.41 E-value=5.7e-13 Score=116.44 Aligned_cols=106 Identities=23% Similarity=0.232 Sum_probs=80.0
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC------CeE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS------HIR 417 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs------H~~ 417 (498)
+++||+.||.. +.+.|.|+||||.++.+|+. ++|+.||+.||+|+++. ....++.+.+.++ +.+
T Consensus 10 ~~~vLl~~r~~-~~~~~~w~~PgG~ie~gE~~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04673 10 GGRVLLVRRAN-PPDAGLWSFPGGKVELGETL---EQAALRELLEETGLEAE------VGRLLTVVDVIERDAAGRVEFH 79 (122)
T ss_pred CCEEEEEEEcC-CCCCCeEECCCcccCCCCCH---HHHHHHHHHHhhCcEee------eceeEEEEEEeeccCCCccceE
Confidence 57999999975 45789999999999999866 89999999999999876 4456666666653 334
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHH
Q 010868 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVR 465 (498)
Q Consensus 418 l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~ 465 (498)
..+++|.+.. ..+.. ....|+.+++|++++++.++++++.++
T Consensus 80 ~~~~~~~~~~-~~~~~-----~~~~E~~~~~w~~~~el~~~~~~~~~~ 121 (122)
T cd04673 80 YVLIDFLCRY-LGGEP-----VAGDDALDARWVPLDELAALSLTESTR 121 (122)
T ss_pred EEEEEEEEEe-CCCcc-----cCCcccceeEEECHHHHhhCcCCcccc
Confidence 5566677653 22211 123567889999999999999988765
No 38
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.41 E-value=6.3e-13 Score=121.19 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=83.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCccccccc--------ccccEEEEc
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILRE--------DVGEFVHIF 413 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~--------~l~~v~H~f 413 (498)
+.+|+||+.||..+ .|.|+||||.++.||++ .+|+.||+.||+|+++.... ..... ......|.|
T Consensus 16 ~~~~~vLl~~r~~~---~~~W~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 88 (148)
T PRK09438 16 TPDLGVLMLQRADD---PDFWQSVTGSLEEGETP---AQTAIREVKEETGIDVLAEQ-LTLIDCQRSIEYEIFPHWRHRY 88 (148)
T ss_pred eCCCeEEEEEecCC---CCcEeCCcccCCCCCCH---HHHHHHHHHHHhCcCccccc-eeecccccccccccchhhhhcc
Confidence 56789999998643 58999999999999876 89999999999999872000 00000 011112222
Q ss_pred C--CeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhh
Q 010868 414 S--HIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFK 475 (498)
Q Consensus 414 s--H~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~ 475 (498)
+ +.+...++|.+.+ .++. .+...|+.+++|++++++.++.+.+.++.+++.+.+..
T Consensus 89 ~~~~~~~~~~~f~~~~--~~~~----~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~ 146 (148)
T PRK09438 89 APGVTRNTEHWFCLAL--PHER----PVVLTEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRL 146 (148)
T ss_pred ccccCCceeEEEEEec--CCCC----ccccCcccceeeCCHHHHHHHhcChhHHHHHHHHHHHh
Confidence 2 1234457777753 2221 12234889999999999999999999999999877654
No 39
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=1e-12 Score=115.35 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=72.9
Q ss_pred CCeEEEEecCCCC-CCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEE
Q 010868 344 DGVFILVKRRDEG-LLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (498)
Q Consensus 344 ~gkvLI~KRp~~g-llaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~ 422 (498)
+++||+.||...+ ...|.|+||||+++.+|+. ++|+.||+.||+|+++. ....+..+.+... ....+++
T Consensus 10 ~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~-~~~~~~~ 79 (117)
T cd04691 10 DDKVLLERRSLTKNADPGKLNIPGGHIEAGESQ---EEALLREVQEELGVDPL------SYTYLCSLYHPTS-ELQLLHY 79 (117)
T ss_pred CCEEEEEEeCCCCCCCCCeEECcceeecCCCCH---HHHHHHHHHHHHCCCcc------cceEEEEEeccCC-CeEEEEE
Confidence 5899999998765 4899999999999999876 89999999999999864 3345555555444 3455677
Q ss_pred EEEEEEEeCCcccccccccCCCCceeeecCCCcCC
Q 010868 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (498)
|.+.. ..+. +...|..++.|++.+++..
T Consensus 80 ~~~~~-~~~~------~~~~E~~~~~W~~~~~l~~ 107 (117)
T cd04691 80 YVVTF-WQGE------IPAQEAAEVHWMTANDIVL 107 (117)
T ss_pred EEEEE-ecCC------CCcccccccEEcCHHHcch
Confidence 77763 4442 2235788899999998863
No 40
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.40 E-value=1.6e-12 Score=114.34 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=82.7
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC------eE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH------IR 417 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH------~~ 417 (498)
+++||+.||.... .+|.|+||||+++.||+. ++|+.||+.||.|+++. ....++.+.|.|.. .+
T Consensus 10 ~~~vLl~~~~~~~-~~~~w~lPgG~ve~gE~~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04684 10 DGKLLLIQKNGGP-YEGRWDLPGGGIEPGESP---EEALHREVLEETGLTVE------IGRRLGSASRYFYSPDGDYDAH 79 (128)
T ss_pred CCEEEEEEccCCC-CCCeEECCCcccCCCCCH---HHHHHHHHHHHhCcEee------cceeeeEEEEEEECCCCCeecc
Confidence 5899999998766 899999999999999876 89999999999999876 44566666665532 23
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHH
Q 010868 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVY 468 (498)
Q Consensus 418 l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (498)
...++|.|.+ .++... ......++.+++|++++++....+.+..++.+
T Consensus 80 ~~~~~f~~~~--~~~~~~-~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~a~ 127 (128)
T cd04684 80 HLCVFYDARV--VGGALP-VQEPGEDSHGAAWLPLDEAIERLLSPLVLWAV 127 (128)
T ss_pred EEEEEEEEEE--ecCccc-cCCCCCCceeeEEECHHHhhccCCCHHHHHhh
Confidence 4456677753 222210 01223456789999999999888888877654
No 41
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=2.4e-12 Score=115.02 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=85.0
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCe---EE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI---RL 418 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~---~l 418 (498)
..+++||+.||+.. +.|.|.||||++++||++ .+|+.||+.||+|+++.. ......+.|.|++. ..
T Consensus 11 ~~~~~vLl~~r~~~--~~g~w~~PgG~ve~gEs~---~~aa~RE~~EEtGl~~~~------~~~~~~~~~~~~~~~~~~~ 79 (131)
T cd04695 11 DKETKVLLLKRVKT--LGGFWCHVAGGVEAGETA---WQAALRELKEETGISLPE------LYNADYLEQFYEANDNRIL 79 (131)
T ss_pred CCCCEEEEEEecCC--CCCcEECCcccccCCCCH---HHHHHHHHHHHhCCCccc------cccccceeeEeecCCceEE
Confidence 45789999999876 889999999999999877 799999999999998752 12222334444432 22
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhh
Q 010868 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKF 474 (498)
Q Consensus 419 ~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~ 474 (498)
.+.+|.+.+ ..+.. .....++.+++|++.+++.++...+.++.+++.+...
T Consensus 80 ~~~~f~~~~-~~~~~----~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~~ 130 (131)
T cd04695 80 MAPVFVGFV-PPHQE----VVLNHEHTEYRWCSFAEALELAPFPGQRALYDHVWRY 130 (131)
T ss_pred EEEEEEEEe-cCCCc----cccCchhcccEecCHHHHHHhcCChhHHHHHHHHHhh
Confidence 344555542 12211 1123578899999999999999999999999887653
No 42
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=1.4e-12 Score=115.00 Aligned_cols=106 Identities=16% Similarity=0.032 Sum_probs=74.3
Q ss_pred CCCeEEEEecCCC--CCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEE
Q 010868 343 PDGVFILVKRRDE--GLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKV 420 (498)
Q Consensus 343 ~~gkvLI~KRp~~--gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l 420 (498)
++|+||+.+|... ..++|+|+||||+++.+|++ ++|+.||+.||+|+++. .........+.+......+
T Consensus 10 ~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~ 80 (122)
T cd04682 10 GDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETP---LECVLRELLEEIGLTLP------ESRIPWFRVYPSASPPGTE 80 (122)
T ss_pred cCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCH---HHHHHHHHHHHhCCccc------ccccceeEecccCCCCceE
Confidence 3589999999864 57999999999999999876 89999999999999875 1122222233333344566
Q ss_pred EEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCC
Q 010868 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT 461 (498)
Q Consensus 421 ~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp 461 (498)
++|.+.. ..+. .. .....++.+++|++.+++.+...+
T Consensus 81 ~~f~~~~-~~~~-~~--~~~~~E~~~~~W~~~~el~~~~~~ 117 (122)
T cd04682 81 HVFVVPL-TARE-DA--ILFGDEGQALRLMTVEEFLAHEDA 117 (122)
T ss_pred EEEEEEE-ecCC-Cc--cccCchhheeecccHHHHhhcccc
Confidence 7777753 2221 11 123467888999999999766543
No 43
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=4.1e-12 Score=112.21 Aligned_cols=111 Identities=21% Similarity=0.183 Sum_probs=80.4
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC--CeEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--HIRLK 419 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs--H~~l~ 419 (498)
+.+|+||+.+|... ...|.|+||||+++.+|+. ++|+.||+.||+|+++. ..+.++.+.|.++ ..+..
T Consensus 11 ~~~~~vLL~~r~~~-~~~~~w~lPgG~ve~gEt~---~eaa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04679 11 RDDGKLLLVKRLRA-PEAGHWGIPGGKVDWMEAV---EDAVVREIEEETGLSIH------STRLLCVVDHIIEEPPQHWV 80 (125)
T ss_pred CCCCEEEEEEecCC-CCCCeEeCCeeeccCCCCH---HHHHHHHHHHHHCCCcc------cceEEEEEeecccCCCCeEE
Confidence 55789999999753 3579999999999999876 89999999999999986 4556666666654 34455
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHH
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKV 467 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~ki 467 (498)
.++|.+.. ..+ ... .....|+.+++|++.+++.+ .+..+++..
T Consensus 81 ~~~f~~~~-~~~-~~~--~~~~~E~~~~~W~~~~~l~~-~l~~~~~~~ 123 (125)
T cd04679 81 APVYLAEN-FSG-EPR--LMEPDKLLELGWFALDALPQ-PLTRATRDA 123 (125)
T ss_pred EEEEEEee-cCC-ccc--cCCCccccEEEEeCHHHCCc-hhHHHHHHH
Confidence 56677653 232 111 11224678899999999976 666666654
No 44
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.36 E-value=2.6e-12 Score=113.46 Aligned_cols=111 Identities=15% Similarity=0.163 Sum_probs=83.5
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC----CeEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS----HIRLK 419 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs----H~~l~ 419 (498)
+++||+.||..+ |.|+||||.++.+|+. ++|+.||+.||+|+++. ....++.+.+.++ .....
T Consensus 15 ~~~vLl~~~~~~----~~w~~PgG~v~~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T cd03673 15 GIEVLLIHRPRG----DDWSLPKGKLEPGETP---PEAAVREVEEETGIRAE------VGDPLGTIRYWFSSSGKRVHKT 81 (131)
T ss_pred CeEEEEEEcCCC----CcccCCCCccCCCCCH---HHHHHHHHhhhhCCceE------ecceEEEEEEeccCCCCCcceE
Confidence 489999999754 8999999999999766 89999999999999876 4556777777666 34556
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHH
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMV 471 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (498)
+++|.+.. ..+.... ....|..++.|++.+++.++-..+.++.+++..
T Consensus 82 ~~~~~~~~-~~~~~~~---~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~ 129 (131)
T cd03673 82 VHWWLMRA-LGGEFTP---QPDEEVDEVRWLPPDEARDRLSYPNDRELLRAA 129 (131)
T ss_pred EEEEEEEE-cCCCccc---CCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHh
Confidence 67777653 2221110 123567789999999999877778888887764
No 45
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.36 E-value=2.8e-12 Score=113.81 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=75.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC--CeEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--HIRLK 419 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs--H~~l~ 419 (498)
+.+|++|+.||.... ..|+|+||||+++.+|+. .+++.||+.||.|+++. ....++.+.+.|+ ....+
T Consensus 10 ~~~~~vLL~~r~~~~-~~~~w~~PgG~ve~gEs~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 79 (130)
T cd04681 10 NEDGELLVVRRAREP-GKGTLDLPGGFVDPGESA---EEALIREIREETGLKVT------ELSYLFSLPNTYPYGGMEYD 79 (130)
T ss_pred cCCCcEEEEEecCCC-CCCcEeCCceeecCCCCH---HHHHHHHHHHHhCCccc------ceeEEEeecceeeeCCceeE
Confidence 567899999997654 689999999999999866 89999999999999876 3455555544443 22222
Q ss_pred --EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcC--CCCCChHHHHHHH
Q 010868 420 --VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA--SMGLTSGVRKVYT 469 (498)
Q Consensus 420 --l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~--~~~fp~a~~kil~ 469 (498)
..+|.|.+ .+... .....++..++|+++++|. ++.+| ..+..++
T Consensus 80 ~~~~~~~~~~--~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~~-~~~~~~~ 127 (130)
T cd04681 80 TLDLFFVCQV--DDKPI---VKAPDDVAELKWVVPQDIELENFAFP-SIRQAVE 127 (130)
T ss_pred EEEEEEEEEe--CCCCC---cCChHHhheeEEecHHHCCcccCCcH-HHHHHHH
Confidence 12455543 33211 1223467789999999984 45554 3444443
No 46
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.36 E-value=4.8e-12 Score=110.76 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=71.9
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC-eEEEEE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH-IRLKVH 421 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH-~~l~l~ 421 (498)
.+|+|||.||...+.++|+|+||||+++.+|+. ++|+.||+.||+|+.+... ....++.+.+.+.. .+....
T Consensus 9 ~~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~---~~aa~REl~EEtGl~v~~~----~~~~~~~~~~~~~~~~~~~~~ 81 (120)
T cd04683 9 RDDEVLLQRRANTGYMDGQWALPAGHLEKGEDA---VTAAVREAREEIGVTLDPE----DLRLAHTMHRRTEDIESRIGL 81 (120)
T ss_pred ECCEEEEEEccCCCCCCCeEeCCccccCCCCCH---HHHHHHHHHHHHCCccChh----heEEEEEEEecCCCCceEEEE
Confidence 478999999998888899999999999999876 7899999999999987510 11234444444432 233334
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
+|.+.. ..+.. . .....++.+++|+++++|...
T Consensus 82 ~f~~~~-~~~~~-~--~~~~~e~~~~~W~~~~~l~~~ 114 (120)
T cd04683 82 FFTVRR-WSGEP-R--NCEPDKCAELRWFPLDALPDD 114 (120)
T ss_pred EEEEEe-ecCcc-c--cCCCCcEeeEEEEchHHCcch
Confidence 555652 33311 1 112245678999999998653
No 47
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.36 E-value=2.2e-12 Score=111.01 Aligned_cols=112 Identities=24% Similarity=0.263 Sum_probs=83.4
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccc--cEEEEcCCeEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVG--EFVHIFSHIRLK 419 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~--~v~H~fsH~~l~ 419 (498)
+.++++|+.||+.+ ++|+|+||||.++.+|+. .+++.||+.||+|+.+. ...... ...|.++|....
T Consensus 9 ~~~~~ill~kr~~~--~~~~~~~p~G~~~~~e~~---~~~a~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 77 (123)
T cd02883 9 DEDGRVLLVRRADS--PGGLWELPGGGVEPGETL---EEAAIREVREETGLDVD------VLRLLGVYEVESPDEGEHAV 77 (123)
T ss_pred CCCCCEEEEEEcCC--CCCeEeCCcccccCCCCH---HHHHHHHHHHhhCccce------eeeEEEEEEeeccCCCceEE
Confidence 44589999999877 999999999999998766 78999999999999864 122333 344555678888
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHH
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVY 468 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (498)
+++|.+.+. .+... .....+...++|++++++.+++.+++.++++
T Consensus 78 ~~~~~~~~~-~~~~~---~~~~~e~~~~~w~~~~~l~~~~~~~~~~~~~ 122 (123)
T cd02883 78 VFVFLARLV-GGEPT---LLPPDEISEVRWVTLDELPALALSPALRPAL 122 (123)
T ss_pred EEEEEEEeC-CCCcC---CCCCCccceEEEEcHHHCccccccccccccc
Confidence 888888642 22110 0222455678999999999999988887754
No 48
>PLN02325 nudix hydrolase
Probab=99.35 E-value=8e-12 Score=114.07 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=75.1
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC----eEE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH----IRL 418 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH----~~l 418 (498)
++|+||+.||... ...|.|.+|||.++.+|+. ++|+.||+.||.|+++. ..+.++.+.+.|.+ .+.
T Consensus 18 ~~~~vLL~rr~~~-~~~g~W~lPGG~ve~gEs~---~~aa~REv~EEtGl~v~------~~~~l~~~~~~~~~~~~~~~~ 87 (144)
T PLN02325 18 KGNSVLLGRRRSS-IGDSTFALPGGHLEFGESF---EECAAREVKEETGLEIE------KIELLTVTNNVFLEEPKPSHY 87 (144)
T ss_pred cCCEEEEEEecCC-CCCCeEECCceeCCCCCCH---HHHHHHHHHHHHCCCCc------ceEEEEEecceeecCCCCcEE
Confidence 3579999999754 4679999999999999766 89999999999999987 45556555444422 222
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHH
Q 010868 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTM 470 (498)
Q Consensus 419 ~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~ 470 (498)
...+|.+.. ..+.... ......++.+++|++.++|... +..+.+.+++.
T Consensus 88 i~~~f~~~~-~~~~~~~-~~~e~~e~~~~~W~~~d~Lp~~-~~~p~~~~~~~ 136 (144)
T PLN02325 88 VTVFMRAVL-ADPSQVP-QNLEPEKCYGWDWYEWDNLPEP-LFWPLEKLVGS 136 (144)
T ss_pred EEEEEEEEE-CCCCCCC-CcCCchhcCceEEEChHHCChh-hhHHHHHHHHc
Confidence 233444542 2221111 0112234577999999999874 44555554443
No 49
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.34 E-value=6.2e-12 Score=111.38 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=74.4
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCccccccccccc-EEEEcCCeEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGE-FVHIFSHIRLKV 420 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~-v~H~fsH~~l~l 420 (498)
+.+++||+.||..+ +.|+|+||||+++.+|+. ++|+.||+.||+|+.+. ....++. ..|.++.....+
T Consensus 11 ~~~~~vLl~~r~~~--~~~~w~~PGG~ve~gEt~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 79 (127)
T cd04670 11 NEKNEVLVVQERNK--TPNGWKLPGGLVDPGEDI---FDGAVREVLEETGIDTE------FVSVVGFRHAHPGAFGKSDL 79 (127)
T ss_pred cCCCeEEEEEccCC--CCCcEECCCccCCCCCCH---HHHHHHHHHHHHCCCcc------eeEEEEEEecCCCCcCceeE
Confidence 55789999998765 889999999999999876 89999999999999875 2233321 122332222222
Q ss_pred EEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHH
Q 010868 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVY 468 (498)
Q Consensus 421 ~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (498)
+ |.+.+..... . ......|..+++|++.+++.+.+++...+.-+
T Consensus 80 ~-~~~~~~~~~~-~--~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~ 123 (127)
T cd04670 80 Y-FICRLKPLSF-D--INFDTSEIAAAKWMPLEEYISQPITSEVNRLI 123 (127)
T ss_pred E-EEEEEccCcC-c--CCCChhhhheeEEEcHHHHhcchhHHHHHHHH
Confidence 2 3444311111 1 11223466789999999999999888755433
No 50
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.33 E-value=4.2e-12 Score=112.78 Aligned_cols=109 Identities=19% Similarity=0.187 Sum_probs=80.2
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccE----EEEcCC--eE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF----VHIFSH--IR 417 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v----~H~fsH--~~ 417 (498)
+++||+.||..+ .+|.|+||||+++.+|+. .+|+.||+.||+|+.+. ....+... .+.+++ .+
T Consensus 14 ~~~vLL~~r~~~--~~~~w~~PgG~ve~~Es~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~~~ 82 (129)
T cd04664 14 EGRVLLLRRSDK--YAGFWQSVTGGIEDGESP---AEAARREVAEETGLDPE------RLTLLDRGASIAFVEFTDNGRV 82 (129)
T ss_pred CCEEEEEEeCCC--CCCcccccCcccCCCCCH---HHHHHHHHHHHHCCChh------heEEEeecccccccccCCCceE
Confidence 789999999876 999999999999999876 89999999999999874 22223222 122322 34
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHH
Q 010868 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVY 468 (498)
Q Consensus 418 l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (498)
..+++|.+.+ .+... .....|+.++.|++++++.++...+.+++++
T Consensus 83 ~~~~~f~~~~--~~~~~---~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~ 128 (129)
T cd04664 83 WTEHPFAFHL--PSDAV---VTLDWEHDAFEWVPPEEAAALLLWESNRRAW 128 (129)
T ss_pred EEEeEEEEEc--CCCCc---ccCCccccccEecCHHHHHHHHcChhhhhhh
Confidence 5577887764 32211 1223577889999999999998888888875
No 51
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.31 E-value=1.5e-11 Score=109.84 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=80.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC--CeEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--HIRLK 419 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs--H~~l~ 419 (498)
..++++|+.||... -+|.|+||||.++.+|++ .+|+.||+.||+|+++. ....++...+.++ ...+.
T Consensus 8 ~~~~~vLlv~r~~~--~~~~w~~PgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 76 (134)
T cd03675 8 ERDGRFLLVEEETD--GGLVFNQPAGHLEPGESL---IEAAVRETLEETGWHVE------PTALLGIYQWTAPDSDTTYL 76 (134)
T ss_pred EECCEEEEEEEccC--CCceEECCCccCCCCCCH---HHHHHHHHHHHHCcccc------cceEEEEEEeecCCCCeeEE
Confidence 35789999999655 578999999999999876 89999999999999875 3334443333333 23344
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCC---CChHHHHHHHHHHhh
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG---LTSGVRKVYTMVQKF 474 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~---fp~a~~kil~~L~~~ 474 (498)
.++|.+.+ .++... .....+..+..|++.+++..+. .++..+++++.+...
T Consensus 77 ~~~f~~~~--~~~~~~--~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~~ 130 (134)
T cd03675 77 RFAFAAEL--LEHLPD--QPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLAG 130 (134)
T ss_pred EEEEEEEE--CCCCCC--CCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHhc
Confidence 45666653 332111 1122467789999999999886 366677766665443
No 52
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.31 E-value=1e-11 Score=110.22 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=72.0
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEE--------cC
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHI--------FS 414 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~--------fs 414 (498)
.+|+||+.||...+ ++.|+||||.++.+|+. ++|+.||+.||+|+.+. ..+.+....+. ..
T Consensus 10 ~~~~vLl~~r~~~~--~~~~~lPGG~ve~gEt~---~~aa~RE~~EEtGl~v~------~~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd04687 10 KNDKILLIKHHDDG--GVWYILPGGGQEPGETL---EDAAHRECKEEIGIDVE------IGPLLFVREYIGHNPTSELPG 78 (128)
T ss_pred ECCEEEEEEEEcCC--CCeEECCCcccCCCCCH---HHHHHHHHHHHHCCccc------cCcEEEEEEEeccCccccCCC
Confidence 36899999997543 58999999999999866 89999999999999986 22222222222 12
Q ss_pred CeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChH
Q 010868 415 HIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSG 463 (498)
Q Consensus 415 H~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a 463 (498)
..+...++|.|.+ ..+...........++.+++|++.+++.++++.++
T Consensus 79 ~~~~i~~~f~~~~-~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p~ 126 (128)
T cd04687 79 HFHQVELMFECKI-KSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYPS 126 (128)
T ss_pred ceeEEEEEEEEEE-CCCCcccccCCCCCCEEeeEEEcHHHhCcccccCC
Confidence 2344456677764 22211011001122345799999999999988764
No 53
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.30 E-value=4.3e-12 Score=117.34 Aligned_cols=104 Identities=15% Similarity=0.052 Sum_probs=74.5
Q ss_pred CCeEEEEecCCCC-CCCcccccCccccCCC-CChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 344 DGVFILVKRRDEG-LLAGLWEFPSIILDGE-TDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 344 ~gkvLI~KRp~~g-llaGLWEFPggkve~~-e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+++||++||.... .++|+|+||||+++.+ |++ ++|+.||++||+|+++. ....++.+.+.+++....++
T Consensus 15 ~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~---~eaa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~v~ 85 (157)
T cd03426 15 ELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDP---VATALREAEEEIGLPPD------SVEVLGRLPPYYTRSGFVVT 85 (157)
T ss_pred ceEEEEEEcccccccCCCcEECCCCCcCCCcCCH---HHHHHHHHHHHhCCCcc------ceEEEEECCCccccCCCEEE
Confidence 4799999998765 5899999999999998 877 79999999999999876 34455544433333344456
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCC
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGL 460 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~f 460 (498)
+|.+.+ .+... ..+...|..+++|++++++.+..+
T Consensus 86 ~~~~~~--~~~~~--~~~~~~E~~~~~W~~~~el~~~~~ 120 (157)
T cd03426 86 PVVGLV--PPPLP--LVLNPDEVAEVFEVPLSFLLDPAN 120 (157)
T ss_pred EEEEEE--CCCCC--CCCCHHHhheeEEEcHHHHhCcCC
Confidence 666643 22111 123334778899999999988763
No 54
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.30 E-value=3.6e-11 Score=106.65 Aligned_cols=105 Identities=18% Similarity=0.178 Sum_probs=73.9
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEc--CCeEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF--SHIRLK 419 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~f--sH~~l~ 419 (498)
+.+|+||+.||.. +..+|.|.||||.++.+|+. ++|+.||+.||+|+++. ..+.++.+.+.+ .+.+..
T Consensus 11 ~~~~~iLl~~r~~-~~~~~~w~~PGG~ve~gEt~---~~Aa~REl~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 80 (129)
T cd04678 11 NPKGKVLLGKRKG-SHGAGTWALPGGHLEFGESF---EECAAREVLEETGLHIE------NVQFLTVTNDVFEEEGKHYV 80 (129)
T ss_pred CCCCeEEEEeccC-CCCCCeEECCcccccCCCCH---HHHHHHHHHHHhCCccc------ceEEEEEEeEEeCCCCcEEE
Confidence 5668999999985 46899999999999999866 89999999999999986 445555555543 333444
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
..+|.|.+ .+...........++.+++|++.+++.++
T Consensus 81 ~~~~~~~~--~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 81 TIFVKAEV--DDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EEEEEEEe--CCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 45566653 22111110002345678999999999886
No 55
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.30 E-value=1.1e-11 Score=109.74 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=76.2
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC--Ce--EEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--HI--RLK 419 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs--H~--~l~ 419 (498)
+++||+.||.. .|.|+||||.++.||+. ++|+.||+.||+|+++. ....++...|.|+ .. +..
T Consensus 11 ~~~vLl~~~~~----~~~w~lPgG~ve~gEs~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
T cd04688 11 NGKLLVQKNPD----ETFYRPPGGGIEFGESS---EEALIREFKEELGLKIE------ITRLLGVVENIFTYNGKPGHEI 77 (126)
T ss_pred CCEEEEEEeCC----CCeEECCCccccCCCCH---HHHHHHHHHHHhCCcee------cceeeEEEEEeeccCCcccEEE
Confidence 56999999875 68999999999999876 89999999999999876 5566666655443 22 334
Q ss_pred EEEEEEEEEEeCCcccc----cccccCCCCceeeecCCCcCCCCCChHH
Q 010868 420 VHVELLVLCIKGGIDKW----VEKQDKGTLSWKCVDGGTLASMGLTSGV 464 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~----~~~~~~e~~~~~Wv~~~eL~~~~fp~a~ 464 (498)
.++|.|.+ .++.... ......++.+++|++++++..+++.+++
T Consensus 78 ~~~f~~~~--~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p~~ 124 (126)
T cd04688 78 EFYYLVTL--LDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYPEF 124 (126)
T ss_pred EEEEEEEe--CCCcccccccceeccCCCEEEEEEeeHHHcccCccCCcc
Confidence 56777764 3321110 0012356788999999999999887643
No 56
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.29 E-value=1.7e-11 Score=116.19 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=83.7
Q ss_pred cCCCeEEEEecCCCC-CCCcccc-cCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEE
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWE-FPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLK 419 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWE-FPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~ 419 (498)
+.+|+||+++|...+ .++|+|+ ||||++++||++ .+|+.||+.||+|+.+. ....++.+.+......+.
T Consensus 46 ~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~---~eAA~REL~EEtGl~~~------~~~~~~~~~~~~~~~~~~ 116 (180)
T PRK15393 46 DGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQL---LESARREAEEELGIAGV------PFAEHGQFYFEDENCRVW 116 (180)
T ss_pred CCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCH---HHHHHHHHHHHHCCCCc------cceeceeEEecCCCceEE
Confidence 567899999997654 5688885 899999999876 89999999999999864 233455555555555554
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC--CCChHHHHHHHHHHhh
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM--GLTSGVRKVYTMVQKF 474 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~--~fp~a~~kil~~L~~~ 474 (498)
.++|.+. ..+.. .+...|+..++|++++++.++ .|++.....+..+...
T Consensus 117 ~~~f~~~--~~~~~----~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~l~~ 167 (180)
T PRK15393 117 GALFSCV--SHGPF----ALQEEEVSEVCWMTPEEITARCDEFTPDSLKALALWLTR 167 (180)
T ss_pred EEEEEEE--eCCCC----CCChHHeeEEEECCHHHHhhhhhhcCccHHHHHHHHHHh
Confidence 5566654 23321 223457788999999999987 6876666666554333
No 57
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.29 E-value=1.4e-11 Score=106.98 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=74.3
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~ 422 (498)
.+++||+.||.. |.|+||||.++++|++ ++|+.||+.||.|+.+. ....+. .|.+.....++
T Consensus 9 ~~~~vLlv~r~~-----~~w~~PgG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~~~----~~~~~~~~~~~ 70 (112)
T cd04667 9 RGGRVLLVRKSG-----SRWALPGGKIEPGETP---LQAARRELQEETGLQGL------DLLYLF----HVDGGSTRHHV 70 (112)
T ss_pred cCCEEEEEEcCC-----CcEeCCCCcCCCCCCH---HHHHHHHHHHHhCCccc------ceEEEE----EEeCCCEEEEE
Confidence 468999999963 8999999999999876 79999999999999864 222332 22222333466
Q ss_pred EEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHH
Q 010868 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVY 468 (498)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (498)
|.+.+ ..+.. .....++.+++|++.+++.++++++++++|.
T Consensus 71 f~~~~-~~~~~----~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~ 111 (112)
T cd04667 71 FVASV-PPSAQ----PKPSNEIADCRWLSLDALGDLNASAATRLIV 111 (112)
T ss_pred EEEEc-CCcCC----CCCchheeEEEEecHHHhhhcccchhhhhhc
Confidence 66653 12211 1123567789999999999999999998864
No 58
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.29 E-value=1e-11 Score=108.22 Aligned_cols=103 Identities=19% Similarity=0.177 Sum_probs=75.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCccccc--ccccccEEEE---cCCe
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIIL--REDVGEFVHI---FSHI 416 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~--~~~l~~v~H~---fsH~ 416 (498)
+.+|++|+.||.. .|.|+||||.++++|+. ++|+.||+.||+|+++. . ...++.+.+. ++..
T Consensus 9 ~~~~~vLl~~r~~----~~~w~~PgG~ve~~Es~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 75 (118)
T cd04690 9 VRDGRVLLVRKRG----TDVFYLPGGKIEAGETP---LQALIRELSEELGLDLD------PDSLEYLGTFRAPAANEPGV 75 (118)
T ss_pred ecCCeEEEEEECC----CCcEECCCCccCCCCCH---HHHHHHHHHHHHCCccC------hhheEEEEEEecccccCCCc
Confidence 4578999999864 36899999999999876 89999999999999875 3 4455555442 2334
Q ss_pred EEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHH
Q 010868 417 RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGV 464 (498)
Q Consensus 417 ~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~ 464 (498)
.+.+++|.+.+ .+.. ....+..+++|++++++...++++.+
T Consensus 76 ~~~~~~f~~~~--~~~~-----~~~~e~~~~~W~~~~e~~~~~~~~~~ 116 (118)
T cd04690 76 DVRATVYVAEL--TGEP-----VPAAEIEEIRWVDYDDPADDRLAPLL 116 (118)
T ss_pred EEEEEEEEEcc--cCCc-----CCCchhhccEEecHHHccccccCccc
Confidence 56677777753 2211 12357788999999999888888765
No 59
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.28 E-value=8e-12 Score=112.21 Aligned_cols=104 Identities=16% Similarity=0.232 Sum_probs=72.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC------
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH------ 415 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH------ 415 (498)
-++++||+.||..++ +|.|+||||+++.||+. ++|+.||+.||+|+.+.. .+....+++.+.+.|+.
T Consensus 10 ~~~~~~Llvk~~~~~--~g~W~fPgG~ve~gEt~---~eaa~REl~EEtGl~v~~--~~i~~~~~~~~~~~~~~~~~~~~ 82 (132)
T cd04661 10 LDDTLVLLVQQKVGS--QNHWILPQGKREEGETL---RQTAERTLKELCGNNLKA--KFYGNAPVGFYKYKYPKAVRNEG 82 (132)
T ss_pred ccCcEEEEEEeecCC--CCeeECCcccccCCCCH---HHHHHHHHHHhhCCCceE--EEEEecCcEEEEEecCccccccc
Confidence 467899999997643 89999999999999776 899999999999998651 00001223344444432
Q ss_pred -eEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC
Q 010868 416 -IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 416 -~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
....+++|.+.+ ..|.. . ...++.+++|++.++|..+
T Consensus 83 ~~~~~~~~f~~~~-~~g~~-~----~~~e~~~~~W~~~~el~~~ 120 (132)
T cd04661 83 IVGAKVFFFKARY-MSGQF-E----LSQNQVDFKWLAKEELQKY 120 (132)
T ss_pred CcccEEEEEEEEE-ecCcc-c----cCCCcceeEecCHHHHHhh
Confidence 124567777764 44421 1 1257889999999999874
No 60
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.27 E-value=2.8e-11 Score=107.45 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=72.7
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|+||+.+|..+ ...|.|+||||+++.+|++ ++|+.||++||+|+++. ..+.+. +.+...| ...+
T Consensus 9 ~~~~~vLl~~r~~~-~~~~~w~lPgG~ve~gEt~---~~aa~REl~EEtG~~~~------~~~~~~-~~~~~~~--~~~~ 75 (123)
T cd04671 9 NNQGEVLLIQEAKR-SCRGKWYLPAGRMEPGETI---EEAVKREVKEETGLDCE------PTTLLS-VEEQGGS--WFRF 75 (123)
T ss_pred cCCCEEEEEEecCC-CCCCeEECceeecCCCCCH---HHHHHHHHHHHHCCeee------cceEEE-EEccCCe--EEEE
Confidence 56789999999754 4699999999999999876 89999999999999886 333333 2222233 3345
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHH
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVR 465 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~ 465 (498)
+|.|+. ..+..... .....+..+++|++.+++ .+++.+++.
T Consensus 76 ~f~a~~-~~g~~~~~-~~~~~e~~~~~W~~~~el-~~~~~~~~~ 116 (123)
T cd04671 76 VFTGNI-TGGDLKTE-KEADSESLQARWYSNKDL-PLPLRAHDI 116 (123)
T ss_pred EEEEEE-eCCeEccC-CCCCcceEEEEEECHHHC-CCccchhee
Confidence 666653 33311110 011234457899999999 567766653
No 61
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.26 E-value=1.7e-11 Score=108.98 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=73.8
Q ss_pred cCCCeEEEEecCCCC-CCCccccc-CccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEE
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWEF-PSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLK 419 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWEF-Pggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~ 419 (498)
+.+|+||++||...+ .+.|+|+| |||+++.+|+. ++|+.||+.||+|+++. ....++.+.+......+.
T Consensus 9 ~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~---~~aa~REl~EEtGl~~~------~l~~~~~~~~~~~~~~~~ 79 (126)
T cd04697 9 NSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESY---LQNAQRELEEELGIDGV------QLTPLGLFYYDTDGNRVW 79 (126)
T ss_pred cCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCH---HHHHHHHHHHHHCCCcc------ccEEeeEEEecCCCceEE
Confidence 668999999998765 57999999 69999999876 79999999999999875 234555555544433455
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
.++|.+.. .+.. .....|+.+++|++.+++.++
T Consensus 80 ~~~f~~~~--~~~~----~~~~~E~~~~~w~~~~el~~~ 112 (126)
T cd04697 80 GKVFSCVY--DGPL----KLQEEEVEEITWLSINEILQF 112 (126)
T ss_pred EEEEEEEE--CCCC----CCCHhHhhheEEcCHHHHHHH
Confidence 56666642 3311 123356788999999887653
No 62
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.26 E-value=2.5e-11 Score=108.32 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=72.6
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~ 422 (498)
.+++||+.||..+. ..|.|+||||+++.+|+. ++++.||+.||+|+++. ....++ .+.+++....+++
T Consensus 22 ~~~~vLL~kr~~~~-~~g~w~lPgG~ve~gE~~---~~a~~REl~EEtGl~~~------~~~~~~--~~~~~~~~~~~~~ 89 (130)
T cd04511 22 WEGKVLLCRRAIEP-RHGFWTLPAGFMENGETT---EQGALRETWEEAGARVE------IDGLYA--VYSVPHISQVYMF 89 (130)
T ss_pred cCCEEEEEEecCCC-CCCeEECCcccccCCCCH---HHHHHHHHHHHhCCEEE------eeeEEE--EEecCCceEEEEE
Confidence 35899999997654 789999999999999876 89999999999999875 333333 2334555555677
Q ss_pred EEEEEEEeCCcccccccccCCCCceeeecCCCcC--CCCCC
Q 010868 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA--SMGLT 461 (498)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~--~~~fp 461 (498)
|.+++ ..+.. ....++.+.+|++.++|. ++.|+
T Consensus 90 f~~~~-~~~~~-----~~~~e~~~~~~~~~~~l~~~~l~~~ 124 (130)
T cd04511 90 YRARL-LDLDF-----APGPESLEVRLFTEEEIPWDELAFP 124 (130)
T ss_pred EEEEE-cCCcc-----cCCcchhceEEECHHHCCchhcccc
Confidence 77764 22211 122467788999999996 45554
No 63
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.26 E-value=3.5e-11 Score=109.84 Aligned_cols=118 Identities=23% Similarity=0.231 Sum_probs=77.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCccccccccccc----EEEEcC-C-
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGE----FVHIFS-H- 415 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~----v~H~fs-H- 415 (498)
+.+++||+.||...+ |+|+||||.++++|+. .+|+.||+.||.|+++. ..+.++. +.+.++ +
T Consensus 12 ~~~~~vLL~~r~~~~---~~W~~PgG~~e~gE~~---~~aA~REv~EEtGl~~~------~~~~l~~~~~~~~y~~~~~~ 79 (147)
T cd03671 12 NEDGKVFVGRRIDTP---GAWQFPQGGIDEGEDP---EQAALRELEEETGLDPD------SVEIIAEIPDWLRYDLPPEL 79 (147)
T ss_pred eCCCEEEEEEEcCCC---CCEECCcCCCCCCcCH---HHHHHHHHHHHHCCCcC------ceEEEEEcCCeeEeeChhhh
Confidence 567899999998766 9999999999999766 89999999999999875 2223332 223222 0
Q ss_pred ---------eEEEEEEEEEEEEEeCCccccccc-ccCCCCceeeecCCCcCCCCCChHHHHHHHHHHh
Q 010868 416 ---------IRLKVHVELLVLCIKGGIDKWVEK-QDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQK 473 (498)
Q Consensus 416 ---------~~l~l~~~~~~~~~~g~~~~~~~~-~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (498)
-.-..++|.+.+........+ .. ...|..+++|++++++.++..| -.+.|++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~E~~~~~W~~~~el~~~~~~-~~~~~~~~~~~ 145 (147)
T cd03671 80 KLKIWGGRYRGQEQKWFLFRFTGDDSEIDL-NAPEHPEFDEWRWVPLEELPDLIVP-FKRPVYEAVLK 145 (147)
T ss_pred hccccCCcCCCEEEEEEEEEecCCCccccC-CCCCCCCEeeEEeCCHHHHHHhchh-hhHHHHHHHHH
Confidence 012345555543211111111 11 1357888999999999988765 55567766543
No 64
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=3.6e-11 Score=104.85 Aligned_cols=109 Identities=18% Similarity=0.124 Sum_probs=76.7
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|+||+.||...+ .|+||||.++.+|++ ++|+.||+.||+|+.+.. ....++.+.+.++.....++
T Consensus 9 ~~~~~vLL~~r~~~~----~w~~PgG~ve~gEt~---~~aa~REl~EEtG~~~~~-----~~~~~~~~~~~~~~~~~~~~ 76 (120)
T cd04680 9 DADGRVLLVRHTYGP----GWYLPGGGLERGETF---AEAARRELLEELGIRLAV-----VAELLGVYYHSASGSWDHVI 76 (120)
T ss_pred CCCCeEEEEEECCCC----cEeCCCCcCCCCCCH---HHHHHHHHHHHHCCcccc-----ccceEEEEecCCCCCceEEE
Confidence 567899999997554 999999999999876 899999999999998750 23445555565544445567
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHH
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVY 468 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (498)
+|.|.. ..+.. .....|..+++|++.+++.+ .+.++.+..+
T Consensus 77 ~f~~~~-~~~~~----~~~~~E~~~~~w~~~~~l~~-~~~~~~~~~~ 117 (120)
T cd04680 77 VFRARA-DTQPV----IRPSHEISEARFFPPDALPE-PTTPATRRRI 117 (120)
T ss_pred EEEecc-cCCCc----cCCcccEEEEEEECHHHCcc-cCChHHHHHh
Confidence 777753 22211 12335667899999999988 4445555444
No 65
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.23 E-value=9.7e-11 Score=105.77 Aligned_cols=112 Identities=22% Similarity=0.214 Sum_probs=77.4
Q ss_pred cCC-CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccc----cEEEE-c--
Q 010868 342 QPD-GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVG----EFVHI-F-- 413 (498)
Q Consensus 342 ~~~-gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~----~v~H~-f-- 413 (498)
+.+ ++||+.||.. .|.|.+|||+++.+|++ ++|+.||+.||.|+++. ...... ...|. |
T Consensus 11 ~~~~~~vLLv~r~~----~~~w~lPgG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~ 77 (138)
T cd03674 11 NPDRGKVLLTHHRK----LGSWLQPGGHIDPDESL---LEAALRELREETGIELL------GLRPLSVLVDLDVHPIDGH 77 (138)
T ss_pred eCCCCeEEEEEEcC----CCcEECCceecCCCCCH---HHHHHHHHHHHHCCCcc------cceeccccccceeEeecCC
Confidence 344 8999999865 47999999999999877 89999999999999865 112221 01221 1
Q ss_pred ------CCeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHH
Q 010868 414 ------SHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMV 471 (498)
Q Consensus 414 ------sH~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (498)
.+.++. .+|.|.+ ..+ ... .....|..+++|++.+++..+++++.++.+++..
T Consensus 78 ~~~~~~~~~~~~-~~y~~~~-~~~-~~~--~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~ 136 (138)
T cd03674 78 PKRGVPGHLHLD-LRFLAVA-PAD-DVA--PPKSDESDAVRWFPLDELASLELPEDVRRLVEKA 136 (138)
T ss_pred CCCCCCCcEEEE-EEEEEEc-cCc-ccc--CCCCCcccccEEEcHHHhhhccCCHHHHHHHHHH
Confidence 233332 3466653 222 111 0134577889999999999999999999998764
No 66
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.22 E-value=2.4e-11 Score=107.15 Aligned_cols=118 Identities=25% Similarity=0.217 Sum_probs=86.1
Q ss_pred cCCCeEEEEecCCCC-CCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeE---
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIR--- 417 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~--- 417 (498)
+.+|+||+.||...+ ..+|.|+||||.++++|+. .+|+.||+.||+|+++. ....+....+......
T Consensus 11 ~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~---~~aa~REl~EE~g~~~~------~~~~~~~~~~~~~~~~~~~ 81 (134)
T PF00293_consen 11 NEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESP---EEAARRELKEETGLDVS------PLELLGLFSYPSPSGDPEG 81 (134)
T ss_dssp ETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHH---HHHHHHHHHHHHSEEEE------EEEEEEEEEEEETTTESSE
T ss_pred eCCcEEEEEEecCCCCCCCCeEecceeeEEcCCch---hhhHHhhhhhcccceec------ccccceeeeecccCCCccc
Confidence 556799999998775 5899999999999998766 89999999999999874 3344555555544332
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHH
Q 010868 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMV 471 (498)
Q Consensus 418 l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (498)
...++|.+.+....... .....+..++.|++++++.++.....+..++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~ 132 (134)
T PF00293_consen 82 EIVIFFIAELPSEQSEI---QPQDEEISEVKWVPPDELLELLLNGRIRKIIPWL 132 (134)
T ss_dssp EEEEEEEEEEEEEESEC---HTTTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHH
T ss_pred EEEEEEEEEEeCCcccc---CCCCccEEEEEEEEHHHhhhchhCcchhhhhccc
Confidence 45566666542221111 1222377889999999999999989988887765
No 67
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.22 E-value=3.3e-11 Score=110.10 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=70.9
Q ss_pred cCCCeEEEEecCCCC-CCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC-----
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH----- 415 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH----- 415 (498)
+.++++|++||+..+ .++|+|+||||.++.+|+. .+|+.||+.||+|+.+.... ...+.++...|.|++
T Consensus 10 ~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~---~~aa~RE~~EE~gi~~~~~~--~~~~~l~~~~~~~~~~~~~~ 84 (143)
T cd04694 10 SSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENL---LEAGLRELNEETGLTLDPID--KSWQVLGLWESVYPPLLSRG 84 (143)
T ss_pred cCCCEEEEEEECCCCCCCCCeEECcccccCCCCCH---HHHHHHHHHHHHCCCccccc--cceeEEeeeccccccccCCC
Confidence 568899999998764 7999999999999988765 79999999999999875100 002455555565552
Q ss_pred ----eEEEEEEEEEEEEEeCCccc--ccccccCCCCceeeecCCCcCC
Q 010868 416 ----IRLKVHVELLVLCIKGGIDK--WVEKQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 416 ----~~l~l~~~~~~~~~~g~~~~--~~~~~~~e~~~~~Wv~~~eL~~ 457 (498)
.++.++++.+. ..+.... .+.+...|+.+.+|++.+++.+
T Consensus 85 ~~~~~~~~~y~~~~~--~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~ 130 (143)
T cd04694 85 LPKRHHIVVYILVKS--SETHQQLQARLQPDPNEVSAAAWLDKSLAKA 130 (143)
T ss_pred cccceeEEEEEEEEe--ccccccccccccCChhhccceEeeCHHHHHH
Confidence 22333333321 1111000 1123346788899999887643
No 68
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.21 E-value=6.5e-11 Score=107.62 Aligned_cols=103 Identities=19% Similarity=0.164 Sum_probs=72.3
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEE-EE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRL-KV 420 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l-~l 420 (498)
+.+++||+.||.. +...|+|+||||.++++|++ ++|+.||+.||.|+++. ....++.+.+.|++... ..
T Consensus 22 ~~~~~vLL~~r~~-~~~~~~w~lPgG~ve~gEt~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 91 (142)
T cd04700 22 NERNDVLLVQEKG-GPKKGLWHIPSGAVEDGEFP---QDAAVREACEETGLRVR------PVKFLGTYLGRFDDGVLVLR 91 (142)
T ss_pred eCCCcEEEEEEcC-CCCCCeEECCceecCCCCCH---HHHHHHHHHHhhCceee------ccEEEEEEEEEcCCCcEEEE
Confidence 4567899988754 34689999999999999877 89999999999999886 44566666555654332 34
Q ss_pred EEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC
Q 010868 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 421 ~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
++|.+.+ ..+.... ....|..+++|++++++.++
T Consensus 92 ~~f~~~~-~~~~~~~---~~~~E~~~~~w~~~~el~~~ 125 (142)
T cd04700 92 HVWLAEP-EGQTLAP---KFTDEIAEASFFSREDVAQL 125 (142)
T ss_pred EEEEEEe-cCCcccc---CCCCCEEEEEEECHHHhhhc
Confidence 6676653 1221111 11246778999999888654
No 69
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.18 E-value=6.3e-11 Score=109.79 Aligned_cols=101 Identities=13% Similarity=0.059 Sum_probs=70.3
Q ss_pred cCCCeEEEEecCCCC-CCCcccccC-ccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC---Ce
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWEFP-SIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS---HI 416 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWEFP-ggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs---H~ 416 (498)
+.+|+||++||+.+. .++|+|++| ||.++.|| .+|+.||+.||+|+++... ....+..+.|.++ ..
T Consensus 36 ~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE-----~eaa~REl~EE~Gl~~~~~----~l~~~~~~~~~~~~~~g~ 106 (158)
T TIGR02150 36 NEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE-----LEAAIRRLREELGIPADDV----PLTVLPRFSYRARDAWGE 106 (158)
T ss_pred cCCCeEEEEeccCCCcCCCCCccccccCCCCccc-----HHHHHHHHHHHHCCCcccc----ceEEcceEEEEEecCCCc
Confidence 668999999998765 789999998 79999887 2788999999999987611 0123444455443 23
Q ss_pred EEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCC
Q 010868 417 RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 417 ~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (498)
+..+++|.+.. .+. ..+...|+.+++|++++++..
T Consensus 107 ~~~~~~f~~~~--~~~----~~~~~~Ev~~~~W~~~~el~~ 141 (158)
T TIGR02150 107 HELCPVFFARA--PVP----LNPNPEEVAEYRWVSLEELKE 141 (158)
T ss_pred EEEEEEEEEec--CCc----ccCChhHeeeEEEeCHHHHHH
Confidence 44456676653 221 123345888999999988754
No 70
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.17 E-value=1.7e-10 Score=101.89 Aligned_cols=102 Identities=12% Similarity=0.039 Sum_probs=69.1
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC----eEE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH----IRL 418 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH----~~l 418 (498)
.+|+||+.+|.. .|.|+||||.++.+|+. .+|+.||+.||+|+++. ....++.+.|.|.. .+.
T Consensus 10 ~~~~vLlv~~~~----~~~~~lPGG~ve~gEt~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~~ 76 (125)
T cd04689 10 AGNKVLLARVIG----QPHYFLPGGHVEPGETA---ENALRRELQEELGVAVS------DGRFLGAIENQWHEKGVRTHE 76 (125)
T ss_pred eCCEEEEEEecC----CCCEECCCCcCCCCCCH---HHHHHHHHHHHhCceee------ccEEEEEEeeeeccCCceEEE
Confidence 478999999864 36899999999999766 89999999999999876 45566666655421 122
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCC
Q 010868 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG 459 (498)
Q Consensus 419 ~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~ 459 (498)
..++|.+.. ..+..... .....++.+++|++.+++..+|
T Consensus 77 ~~~~f~~~~-~~~~~~~~-~~~~~e~~~~~W~~~~el~~~p 115 (125)
T cd04689 77 INHIFAVES-SWLASDGP-PQADEDHLSFSWVPVSDLSLYP 115 (125)
T ss_pred EEEEEEEEc-ccccccCC-ccCccceEEEEEccHHHcccCc
Confidence 245566643 22110010 1122356789999999987654
No 71
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.17 E-value=6.7e-11 Score=104.85 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=65.0
Q ss_pred cCCCeEEEEecCCCC-CCCcccccC-ccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEE
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWEFP-SIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLK 419 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWEFP-ggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~ 419 (498)
+.+|+||++||...+ .++|.|+|| ||+++.+|++ +|+.||+.||+|+++... ....+..+.+... ....
T Consensus 9 ~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~----~aa~REl~EEtGl~~~~~----~~~~~~~~~~~~~-~~~~ 79 (127)
T cd04693 9 NSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS----TAAEREVKEELGLELDFS----ELRPLFRYFFEAE-GFDD 79 (127)
T ss_pred eCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH----HHHHHHHHHHhCCCcChh----hcEEEEEEEeecC-CeEE
Confidence 567899999998755 588999998 9999998753 899999999999987510 1112333333221 2222
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCC
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (498)
+++|.+.. ..+.. .+...|+.+++|++++++..
T Consensus 80 ~~~~~~~~-~~~~~----~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04693 80 YYLFYADV-EIGKL----ILQKEEVDEVKFVSKDEIDG 112 (127)
T ss_pred EEEEEecC-ccccc----ccCHHHhhhEEEeCHHHHHH
Confidence 33333321 11111 12334678899999887744
No 72
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.17 E-value=9.8e-11 Score=103.31 Aligned_cols=103 Identities=18% Similarity=0.160 Sum_probs=71.1
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEE---EEc--CCeEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV---HIF--SHIRL 418 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~---H~f--sH~~l 418 (498)
+++||+.||.. .|.|+||||+++.+|+. .+|+.||+.||+|+++. ..+.++... +.+ .+.++
T Consensus 12 ~~~vLL~~~~~----~~~w~~PGG~ve~gEs~---~~aa~REl~EEtG~~~~------~~~~~~~~~~~~~~~~~~~~~~ 78 (123)
T cd04672 12 DGKILLVREKS----DGLWSLPGGWADVGLSP---AENVVKEVKEETGLDVK------VRKLAAVDDRNKHHPPPQPYQV 78 (123)
T ss_pred CCEEEEEEEcC----CCcEeCCccccCCCCCH---HHHHHHHHHHHhCCeee------EeEEEEEeccccccCCCCceEE
Confidence 58999999865 68999999999999876 89999999999999874 333333222 222 22334
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHH
Q 010868 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVR 465 (498)
Q Consensus 419 ~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~ 465 (498)
...+|.|.+ ..+ .. .. ..+..+++|++++++..+.+|...+
T Consensus 79 ~~~~f~~~~-~~~-~~---~~-~~E~~~~~W~~~~el~~l~~~~~~~ 119 (123)
T cd04672 79 YKLFFLCEI-LGG-EF---KP-NIETSEVGFFALDDLPPLSEKRNTE 119 (123)
T ss_pred EEEEEEEEe-cCC-cc---cC-CCceeeeEEECHHHCcccccCCcch
Confidence 344666653 222 11 11 2467789999999999998876543
No 73
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.16 E-value=9.4e-11 Score=105.06 Aligned_cols=104 Identities=18% Similarity=0.123 Sum_probs=71.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.++++|+.+|...+..+|+|+||||.++.+|++ ++|+.||+.||+|+++. ....++.+.+........++
T Consensus 11 ~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 81 (137)
T cd03424 11 DDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDP---EEAARRELEEETGYEAG------DLEKLGSFYPSPGFSDERIH 81 (137)
T ss_pred cCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCH---HHHHHHHHHHHHCCCcc------ceEEEeeEecCCcccCccEE
Confidence 5668999988766677789999999999999876 89999999999999885 33445544332111123456
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCC
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (498)
+|.+.. .+.... ......|..+++|++.+++..
T Consensus 82 ~~~~~~--~~~~~~-~~~~~~E~~~~~w~~~~el~~ 114 (137)
T cd03424 82 LFLAED--LSPGEE-GLLDEGEDIEVVLVPLDEALE 114 (137)
T ss_pred EEEEEc--cccccc-CCCCCCCeeEEEEecHHHHHH
Confidence 666653 221110 123345778899999988864
No 74
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.14 E-value=1.9e-10 Score=101.91 Aligned_cols=108 Identities=14% Similarity=0.039 Sum_probs=75.2
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEE----EEcCCeEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV----HIFSHIRLK 419 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~----H~fsH~~l~ 419 (498)
+.+||+.||+. |.|+||||.++++|++ .+|+.||+.||+|+++. ....++.+. +.+.+....
T Consensus 16 ~~~vLl~~~~~-----~~w~~PgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T cd03428 16 EIEYLLLQASY-----GHWDFPKGHVEPGEDD---LEAALRETEEETGITAE------QLFIVLGFKETLNYQVRGKLKT 81 (130)
T ss_pred CceEEEEEccC-----CcCcCCcCCCCCCCCH---HHHHHHHHHHHHCCChh------hhhhhccceeEEEccccCcceE
Confidence 45899999985 8999999999999876 79999999999999886 333332222 222223344
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHH
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTM 470 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~ 470 (498)
+++|.+.+. .+... ... .+..++.|++++++.++-.++.++.+++.
T Consensus 82 ~~~f~~~~~-~~~~~---~~~-~E~~~~~W~~~~e~~~~~~~~~~~~~~~~ 127 (130)
T cd03428 82 VTYFLAELR-PDVEV---KLS-EEHQDYRWLPYEEALKLLTYEDLKAVLDK 127 (130)
T ss_pred EEEEEEEeC-CCCcc---ccc-cceeeEEeecHHHHHHHcCchhHHHHHHH
Confidence 566666532 12111 122 46778999999999988777778777765
No 75
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.11 E-value=2.7e-10 Score=106.17 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=70.6
Q ss_pred cCCCeEEEEecCCCC-CCCcccccC-ccccCCCCChhhHHHHHHHHHHHhcCCCCCCCccccccccc-ccEEEEcC--C-
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWEFP-SIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDV-GEFVHIFS--H- 415 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWEFP-ggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l-~~v~H~fs--H- 415 (498)
+.+|+||++||+.++ .++|+|++| ||.++.||++ ++|+.||+.||+|+.+. ....+ ..+.|... .
T Consensus 39 ~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~---~eaa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~ 109 (165)
T cd02885 39 NSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGV---KDAAQRRLREELGITGD------LLELVLPRFRYRAPDDGG 109 (165)
T ss_pred cCCCcEEEEeccCCCccCCCcccccccCCCCCCCCH---HHHHHHHHHHHhCCCcc------chhhccceEEEEEEcCCC
Confidence 567899999999865 789999997 8999999877 89999999999999876 22332 44444322 1
Q ss_pred --eEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC
Q 010868 416 --IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 416 --~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
.+...++|.+.. .+.. .+...|+.+++|++++++.++
T Consensus 110 ~~~~~i~~~f~~~~--~~~~----~~~~~Ev~~~~w~~~~el~~~ 148 (165)
T cd02885 110 LVEHEIDHVFFARA--DVTL----IPNPDEVSEYRWVSLEDLKEL 148 (165)
T ss_pred ceeeEEEEEEEEEe--CCCC----CCCccceeEEEEECHHHHHHH
Confidence 111234555542 2211 123457788999999988653
No 76
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.10 E-value=2.7e-10 Score=103.54 Aligned_cols=102 Identities=21% Similarity=0.172 Sum_probs=70.5
Q ss_pred CeEEEEecCCC-CCCCccccc-CccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC-----eE
Q 010868 345 GVFILVKRRDE-GLLAGLWEF-PSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH-----IR 417 (498)
Q Consensus 345 gkvLI~KRp~~-gllaGLWEF-Pggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH-----~~ 417 (498)
+++|+++|... ..++|.|+| |||+++.+|++ ++|+.||+.||+|+.+... ....++.+.+.|.+ ..
T Consensus 17 ~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~---~~aa~REl~EEtGl~~~~~----~l~~~~~~~~~~~~~~~~~~~ 89 (144)
T cd04692 17 GYVLLQKRSANKKTYPGLWDISSAGHILAGETP---LEDGIRELEEELGLDVSAD----DLIPLGTFKIEYDHIGKLIDR 89 (144)
T ss_pred CEEEEEecCCCCCCCCCccccccCcccCCCCCH---HHHHHHHHHHHhCCCCChH----HeEEeeEEEEeccccCCCccc
Confidence 89999999885 478999999 59999999876 8999999999999986410 23456677777651 11
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcC
Q 010868 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA 456 (498)
Q Consensus 418 l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~ 456 (498)
-..++|.+......+. ..+...|+.+++|++.+++.
T Consensus 90 ~~~~~f~~~~~~~~~~---~~~~~~E~~~~~W~~~~el~ 125 (144)
T cd04692 90 EFHHVYLYELKVPLEE---FTLQKEEVAGVVLIPLDEFA 125 (144)
T ss_pred eEEEEEEEeccCChhh---cCCChhHhheEEEECHHHHH
Confidence 1235666653211111 12334577889999988874
No 77
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.10 E-value=2.2e-10 Score=102.61 Aligned_cols=115 Identities=9% Similarity=0.018 Sum_probs=79.4
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+++||+.||... -.|.|.||||.++.||+. ++|+.||+.||+|+++. ....++...+.+.+. .++
T Consensus 9 ~~~~~vLL~~r~~~--~~~~w~lPgG~ie~gEt~---~~aA~REl~EEtGl~~~------~~~~l~~~~~~~~~~--~~~ 75 (131)
T cd03429 9 DGGDRILLARQPRF--PPGMYSLLAGFVEPGESL---EEAVRREVKEEVGIRVK------NIRYVGSQPWPFPSS--LML 75 (131)
T ss_pred eCCCEEEEEEecCC--CCCcCcCCcccccCCCCH---HHHHhhhhhhccCceee------eeEEEeecCCCCCce--EEE
Confidence 44589999999643 389999999999999866 79999999999999876 334444433334432 245
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCC----CCCChHHHHHHHHHHhh
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS----MGLTSGVRKVYTMVQKF 474 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~----~~fp~a~~kil~~L~~~ 474 (498)
+|.+.+ .++.. .....++.++.|++.+++.+ ++..++.+++.+.+...
T Consensus 76 ~f~~~~--~~~~~---~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~~~~~~~~ 127 (131)
T cd03429 76 GFTAEA--DSGEI---VVDDDELEDARWFSRDEVRAAGEGLPELPPPGSIARQLIEA 127 (131)
T ss_pred EEEEEE--cCCcc---cCCchhhhccEeecHHHHhhcccCCccCCCcchHHHHHHHH
Confidence 566653 22111 12334677899999999887 66667777776665443
No 78
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.10 E-value=3.4e-10 Score=100.47 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=66.4
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEE--EEcC---C-
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV--HIFS---H- 415 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~--H~fs---H- 415 (498)
+.++++|+++|... |.|+||||.++.+|+. .+|+.||+.||+|+++. ....++.+. +.|. +
T Consensus 16 ~~~~~vLL~~r~~~----~~w~~PgG~v~~gEt~---~~aa~REl~EE~Gi~~~------~~~~~~~~~~~~~~~~~~~~ 82 (132)
T cd04677 16 NEQGEVLLQKRSDT----GDWGLPGGAMELGESL---EETARRELKEETGLEVE------ELELLGVYSGKEFYVKPNGD 82 (132)
T ss_pred eCCCCEEEEEecCC----CcEECCeeecCCCCCH---HHHHHHHHHHHhCCeee------eeEEEEEecCCceeecCCCC
Confidence 55689999999754 7899999999999876 89999999999999876 333333221 1111 1
Q ss_pred --eEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCC
Q 010868 416 --IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT 461 (498)
Q Consensus 416 --~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp 461 (498)
..+...++.+. ..+... .....+..+++|++.+++..+-.+
T Consensus 83 ~~~~~~~~~~~~~--~~~~~~---~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 83 DEQYIVTLYYVTK--VFGGKL---VPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred cEEEEEEEEEEEe--ccCCcc---cCCCCceeeEEEEChhHCccchhH
Confidence 12222333332 122111 123356778999999999876554
No 79
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.08 E-value=6.8e-10 Score=101.55 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=62.8
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVE 423 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~ 423 (498)
+++||+.||... |.|+||||+++.+|+. .+|+.||+.||+|+++... ......+.+.+++.. +++|
T Consensus 13 ~~~vLLvr~~~~----~~W~lPGG~ve~gEs~---~~AA~REl~EETGl~v~~~-----~~~~~~~~~~~~~~~--~~~f 78 (145)
T cd03672 13 LDKVLLVKGWKS----KSWSFPKGKINKDEDD---HDCAIREVYEETGFDISKY-----IDKDDYIELIIRGQN--VKLY 78 (145)
T ss_pred CCEEEEEEecCC----CCEECCCccCCCCcCH---HHHHHHHHHHhhCccceec-----cccceeeecccCCcE--EEEE
Confidence 479999998644 4899999999999876 8999999999999987510 000111122233333 3455
Q ss_pred EEEEEEeCCccccccc-ccCCCCceeeecCCCcCCC
Q 010868 424 LLVLCIKGGIDKWVEK-QDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 424 ~~~~~~~g~~~~~~~~-~~~e~~~~~Wv~~~eL~~~ 458 (498)
.+. ...+.... .+ ...|..+++|++.+++.++
T Consensus 79 ~~~-~~~~~~~~--~~~~~~E~~~~~Wv~~~el~~~ 111 (145)
T cd03672 79 IVP-GVPEDTPF--EPKTRKEISKIEWFDIKDLPTK 111 (145)
T ss_pred EEe-cCCCCccc--CcCChhhhheEEEeeHHHhhhh
Confidence 543 12221110 11 2357788999999998765
No 80
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.08 E-value=4.9e-10 Score=103.70 Aligned_cols=121 Identities=19% Similarity=0.105 Sum_probs=77.1
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccE----EEEcCCe-
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF----VHIFSHI- 416 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v----~H~fsH~- 416 (498)
+.+|+||+.||... +|+|+||||.++++|+. ++|+.||+.||+|+.+. ..+.++.. .+.|+..
T Consensus 17 ~~~g~vLL~~r~~~---~~~w~~P~G~~~~gE~~---~~aa~REl~EEtG~~~~------~~~~~~~~~~~~~y~~~~~~ 84 (156)
T PRK00714 17 NRQGQVFWGRRIGQ---GHSWQFPQGGIDPGETP---EQAMYRELYEEVGLRPE------DVEILAETRDWLRYDLPKRL 84 (156)
T ss_pred ecCCEEEEEEEcCC---CCeEECCcccCCCCcCH---HHHHHHHHHHHhCCCcc------ceEEEEEcCCeEEecCcHHH
Confidence 56889999999743 48999999999999766 89999999999999875 22333332 2222210
Q ss_pred ---------EEEEEEEEEEEEEeCCccccccc-ccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhh
Q 010868 417 ---------RLKVHVELLVLCIKGGIDKWVEK-QDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 417 ---------~l~l~~~~~~~~~~g~~~~~~~~-~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~ 476 (498)
.-..++|.+.. ..+.......+ ...|+.+++|++.+++.+.-++. .+.++..+.+.++
T Consensus 85 ~~~~~~~~~~~~~~~fl~~~-~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~-~r~~~~~~~~~~~ 152 (156)
T PRK00714 85 VRRSKGVYRGQKQKWFLLRL-TGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPF-KRDVYRRVLKEFA 152 (156)
T ss_pred hhccCCcccCcEEEEEEEEe-cCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhh-hHHHHHHHHHHHH
Confidence 00235566653 11111110011 22477889999999998865544 3667777666544
No 81
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.03 E-value=1e-09 Score=98.28 Aligned_cols=103 Identities=11% Similarity=0.038 Sum_probs=63.8
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEc----C---C
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF----S---H 415 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~f----s---H 415 (498)
++|+||+.+|... |.|+||||.++.+|++ .+|+.||+.||+|+.+.. ....++.+.+.+ + +
T Consensus 9 ~~~~vLLv~~~~~----~~w~lPgG~ve~gEt~---~~aa~REl~EEtGl~~~~-----~~~~l~~~~~~~~~~~~~~~~ 76 (131)
T cd04686 9 QGDKILLLYTKRY----GDYKFPGGGVEKGEDH---IEGLIRELQEETGATNIR-----VIEKFGTYTERRPWRKPDADI 76 (131)
T ss_pred ECCEEEEEEEcCC----CcEECccccCCCCCCH---HHHHHHHHHHHHCCcccc-----cceEEEEEEeeccccCCCCce
Confidence 3689999998642 5899999999999876 899999999999998621 234555554322 2 2
Q ss_pred eEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCC
Q 010868 416 IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 416 ~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (498)
++...++|.|.+............+......++|++++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~ 118 (131)
T cd04686 77 FHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIE 118 (131)
T ss_pred eEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHH
Confidence 234456777764211111111000001123478999988644
No 82
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.02 E-value=1.3e-09 Score=96.77 Aligned_cols=95 Identities=20% Similarity=0.149 Sum_probs=69.8
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccc-cccccEEEEcCC----eEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILR-EDVGEFVHIFSH----IRL 418 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~-~~l~~v~H~fsH----~~l 418 (498)
.++||+.+|... |.|.||||+++.+|++ ++|+.||+.||.|+++. .. ++++.+.|.+++ .+.
T Consensus 14 ~~~vLLv~~~~~----~~w~~PgG~ve~~E~~---~~aa~RE~~EEtG~~~~------~~~~~l~~~~~~~~~~~~~~~~ 80 (122)
T cd04666 14 EVEVLLVTSRRT----GRWIVPKGGPEKDESP---AEAAAREAWEEAGVRGK------IGKRPLGRFEYRKRSKNRPPRC 80 (122)
T ss_pred ceEEEEEEecCC----CeEECCCCCcCCCCCH---HHHHHHHHHHHhCCccc------ccceEEEEEEeeecCCCCCceE
Confidence 468999988643 8999999999999876 89999999999999875 44 678888888775 255
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcC
Q 010868 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA 456 (498)
Q Consensus 419 ~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~ 456 (498)
..++|.+.+ .+... .....+..+.+|++++++.
T Consensus 81 ~~~~f~~~~--~~~~~---~~~~~e~~~~~W~~~~ea~ 113 (122)
T cd04666 81 EVAVFPLEV--TEELD---EWPEMHQRKRKWFSPEEAA 113 (122)
T ss_pred EEEEEEEEE--ecccc---CCcccCceEEEEecHHHHH
Confidence 567776653 22111 1112345679999988763
No 83
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.01 E-value=3.9e-09 Score=93.42 Aligned_cols=101 Identities=12% Similarity=-0.048 Sum_probs=60.0
Q ss_pred eEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEEEE
Q 010868 346 VFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELL 425 (498)
Q Consensus 346 kvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~~~ 425 (498)
++|+.+|... ...|.|+||||+++.+|+. ++|+.||+.||.|+++. ......-..|..+...+.+..|..
T Consensus 16 ~~lL~~r~~~-~~~~~w~lPgG~ve~~E~~---~~aa~REl~EE~g~~~~------~~~l~~~~~~~~~~~~~~~~~~~~ 85 (118)
T cd04674 16 GLLVIRRGIE-PGRGKLALPGGFIELGETW---QDAVARELLEETGVAVD------PADIRLFDVRSAPDGTLLVFGLLP 85 (118)
T ss_pred CEEEEEeecC-CCCCeEECCceecCCCCCH---HHHHHHHHHHHHCCccc------ccEEEEEEEEecCCCeEEEEEEEe
Confidence 4555566543 3589999999999998766 89999999999999875 111111123445555554444443
Q ss_pred EEEEeCCcccccccccCCCCceeeecCCCcCCCC
Q 010868 426 VLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG 459 (498)
Q Consensus 426 ~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~ 459 (498)
...+.+ ... .....|+.+|.|+....-..++
T Consensus 86 ~~~~~~-~~~--~~~~~E~~~~~~~~~~~~~~~~ 116 (118)
T cd04674 86 ERRAAD-LPP--FEPTDETTERAVVTAPSELAFP 116 (118)
T ss_pred cccccc-CCC--CCCCcceeeEEEccCCcccccc
Confidence 322221 111 1123567778887655443333
No 84
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.95 E-value=2.1e-09 Score=96.95 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=69.5
Q ss_pred cCCCeEEEEecCCCC-CCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCe----
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI---- 416 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~---- 416 (498)
+.+|+||+++|.... ..+|.|+||||.++.+|+. .+|+.||+.||+|+++.. ....+....+.|++.
T Consensus 9 ~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~---~~a~~Re~~EE~G~~~~~-----~~~~~~~~~~~f~~~~~~~ 80 (133)
T cd04685 9 DPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESP---EQAARRELREETGITVAD-----LGPPVWRRDAAFTFLGVDG 80 (133)
T ss_pred cCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCH---HHHHHHHHHHHHCCcccc-----ccceEEEEEEEEEecCccc
Confidence 568899999987653 5889999999999988766 899999999999998731 333343334444322
Q ss_pred EEEEEEEEEEEEEeCCcc--cccccccCCCCceeeecCCCcCCC
Q 010868 417 RLKVHVELLVLCIKGGID--KWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 417 ~l~l~~~~~~~~~~g~~~--~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
+-..++|.+.+. .+... .....+......++|+++++|.+.
T Consensus 81 ~~~~~~f~~~~~-~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 81 RQEERFFLARTP-RTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred eeeEEEEEEEcC-CccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 112345666431 11100 000111123456899999999887
No 85
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.93 E-value=5.6e-09 Score=108.45 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=79.4
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCccccccccccc--EEEEcC--Ce--
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGE--FVHIFS--HI-- 416 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~--v~H~fs--H~-- 416 (498)
.+|+||+.+|... ...|+|.||||.++.||+. ++|+.||+.||+|+++. .....+. ..+.|+ +.
T Consensus 212 ~~g~VLLvrR~~~-p~~g~W~lPGG~ve~gEt~---~~Aa~REl~EETGl~v~------~~~l~~~~~~~~~f~~p~r~~ 281 (340)
T PRK05379 212 QSGHVLLVRRRAE-PGKGLWALPGGFLEQDETL---LDACLRELREETGLKLP------EPVLRGSIRDQQVFDHPGRSL 281 (340)
T ss_pred ECCEEEEEEecCC-CCCCeEECCcccCCCCCCH---HHHHHHHHHHHHCCccc------ccccceeeeeeEEEcCCCCCC
Confidence 3689999999753 4589999999999999866 89999999999999875 1211221 223333 21
Q ss_pred --EEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC--CCChHHHHHHHHHH
Q 010868 417 --RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM--GLTSGVRKVYTMVQ 472 (498)
Q Consensus 417 --~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~--~fp~a~~kil~~L~ 472 (498)
+...++|.+.+ ..+..... ....++.+++|++.+++..+ .+...+..|++.+.
T Consensus 282 ~~~~i~~~f~~~~-~~~~~~~~--~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~ 338 (340)
T PRK05379 282 RGRTITHAFLFEF-PAGELPRV--KGGDDADKARWVPLAELLAMRDRMFEDHFQIITHFL 338 (340)
T ss_pred CCcEEEEEEEEEe-cCCccCcc--CCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence 23346666653 22211111 12246788999999999875 57788888887764
No 86
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=98.91 E-value=5.8e-09 Score=99.08 Aligned_cols=102 Identities=12% Similarity=0.155 Sum_probs=68.0
Q ss_pred cCCCeEEEEecCCCC-CCCcccccC-ccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEc--CCe-
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWEFP-SIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF--SHI- 416 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWEFP-ggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~f--sH~- 416 (498)
+.+|+||++||+.++ .|+|.|.+| ||.++.||++ ++|+.||+.||+|+++.. ....++.+.+.+ +..
T Consensus 43 ~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~---~~aa~REl~EEtGl~~~~-----~~~~~~~~~~~~~~~~~~ 114 (184)
T PRK03759 43 DADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESL---EDAVIRRCREELGVEITD-----LELVLPDFRYRATDPNGI 114 (184)
T ss_pred cCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCH---HHHHHHHHHHHhCCCccc-----cccccceEEEEEecCCCc
Confidence 567899999998654 689999997 8999999876 899999999999998751 111223333221 111
Q ss_pred --EEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCC
Q 010868 417 --RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 417 --~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (498)
+-..++|.+.. .+.. .+...|..+++|++++++.+
T Consensus 115 ~~~~~~~vf~~~~--~~~~----~~~~~Ev~~~~W~~~~el~~ 151 (184)
T PRK03759 115 VENEVCPVFAARV--TSAL----QPNPDEVMDYQWVDPADLLR 151 (184)
T ss_pred eeeEEEEEEEEEE--CCCC----CCChhHeeeEEEECHHHHHH
Confidence 11245666643 2311 22334677899999998844
No 87
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=98.88 E-value=7.4e-09 Score=103.45 Aligned_cols=100 Identities=9% Similarity=-0.015 Sum_probs=74.4
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~ 422 (498)
++++||+.+|.... .|+|++|||.++.||+. ++|+.||+.||.|+++. ..++++...+.|++.. ++.
T Consensus 141 ~~~~iLL~rr~~~~--~g~wslPgG~vE~GEs~---eeAa~REv~EEtGl~v~------~~~~~~s~~~~~p~~l--m~~ 207 (256)
T PRK00241 141 RGDEILLARHPRHR--NGVYTVLAGFVEVGETL---EQCVAREVMEESGIKVK------NLRYVGSQPWPFPHSL--MLG 207 (256)
T ss_pred eCCEEEEEEccCCC--CCcEeCcccCCCCCCCH---HHHhhhhhhhccCceee------eeEEEEeEeecCCCeE--EEE
Confidence 46899999986543 89999999999999876 89999999999999886 4566776667777653 466
Q ss_pred EEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCC
Q 010868 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGL 460 (498)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~f 460 (498)
|.+.+ ..+ .. .....|..+.+|++.+++..++-
T Consensus 208 f~a~~-~~~-~~---~~~~~Ei~~a~W~~~del~~lp~ 240 (256)
T PRK00241 208 FHADY-DSG-EI---VFDPKEIADAQWFRYDELPLLPP 240 (256)
T ss_pred EEEEe-cCC-cc---cCCcccEEEEEEECHHHCcccCC
Confidence 66653 222 11 12234667899999999876553
No 88
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=98.88 E-value=4.3e-09 Score=100.00 Aligned_cols=102 Identities=19% Similarity=0.086 Sum_probs=74.3
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
..+++||+.++...+...+.||||+|.+|++|++ ++|+.||+.||.|+.+. ..+.++.+.+..+...-.++
T Consensus 56 ~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~---~~aA~REl~EEtG~~~~------~l~~l~~~~~~~~~~~~~~~ 126 (185)
T PRK11762 56 LDDDTLLLIREYAAGTERYELGFPKGLIDPGETP---LEAANRELKEEVGFGAR------QLTFLKELSLAPSYFSSKMN 126 (185)
T ss_pred eCCCEEEEEEeecCCCCCcEEEccceeCCCCCCH---HHHHHHHHHHHHCCCCc------ceEEEEEEecCCCccCcEEE
Confidence 3467888888776778889999999999999876 89999999999999987 56777777776666666777
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcC
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA 456 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~ 456 (498)
+|.+.. ..+... .....|..++.|++.+++.
T Consensus 127 ~f~a~~-~~~~~~---~~~e~E~i~~~~~~~~e~~ 157 (185)
T PRK11762 127 IVLAED-LYPERL---EGDEPEPLEVVRWPLADLD 157 (185)
T ss_pred EEEEEc-cccccC---CCCCCceeEEEEEcHHHHH
Confidence 777752 222111 1122344567888877663
No 89
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=98.79 E-value=3.9e-08 Score=90.09 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=70.8
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEc---CCeEEE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF---SHIRLK 419 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~f---sH~~l~ 419 (498)
.+|+||+.||... ..+|+|-+|||.+|.||+. ++|+.||++||.|+++. ..+.+..+.-.- ..+++.
T Consensus 19 ~~~~iLLvrR~~~-p~~g~WalPGG~ve~GEt~---eeaa~REl~EETgL~~~------~~~~~~v~~~~~rd~r~~~v~ 88 (145)
T COG1051 19 RNGRILLVRRANE-PGAGYWALPGGFVEIGETL---EEAARRELKEETGLRVR------VLELLAVFDDPGRDPRGHHVS 88 (145)
T ss_pred eCCEEEEEEecCC-CCCCcEeCCCccCCCCCCH---HHHHHHHHHHHhCCccc------ceeEEEEecCCCCCCceeEEE
Confidence 3569999999754 5889999999999999766 89999999999999975 333433221111 113343
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCC--hHHHHHHHH
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT--SGVRKVYTM 470 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp--~a~~kil~~ 470 (498)
+.++.+. ..|+.. .....+...+.|++.+++.....+ .....+...
T Consensus 89 ~~~~~~~--~~g~~~---~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 136 (145)
T COG1051 89 FLFFAAE--PEGELL---AGDGDDAAEVGWFPLDELPELPLPLAFTLADLRRL 136 (145)
T ss_pred EEEEEEe--cCCCcc---cCChhhHhhcceecHhHcccccccccccHHHHHHH
Confidence 4444332 223111 111124456889999999885443 344444433
No 90
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=98.78 E-value=3.5e-08 Score=94.36 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=71.0
Q ss_pred CCCeEEEEecCCC-CCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 343 PDGVFILVKRRDE-GLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 343 ~~gkvLI~KRp~~-gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
.++.+|+.||... ..+.|.|+||||++|.++ ++.+++..||++||.|+++. ..+.++.+.+.++...+.++
T Consensus 42 ~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~d--e~~~~tA~REl~EEtGl~~~------~~~~lg~l~~~~~~~~~~~~ 113 (190)
T PRK10707 42 PQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTD--ASLIATALREAQEEVAIPPS------AVEVIGVLPPVDSSTGYQVT 113 (190)
T ss_pred CCCEEEEEEeCCcccCCCCcEEcCCcccCCCc--ccHHHHHHHHHHHHHCCCcc------ceEEEEEeeeeeccCCcEEE
Confidence 3569999998865 368999999999999753 22378999999999999886 45677777665555445556
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
++.+.+ ...... .+...|..+..|++.+++.+.
T Consensus 114 ~~v~~~--~~~~~~--~~d~~Ev~~v~~vpl~e~~~~ 146 (190)
T PRK10707 114 PVVGII--PPDLPY--RANEDEVAAVFEMPLAEALHL 146 (190)
T ss_pred EEEEEE--CCCCCC--CCChhhhheEEEEeHHHHhCc
Confidence 655532 211111 122245666889998887554
No 91
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.70 E-value=9.9e-08 Score=85.36 Aligned_cols=94 Identities=10% Similarity=-0.094 Sum_probs=60.3
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccc---cEEEEcCCeEEEEE
Q 010868 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVG---EFVHIFSHIRLKVH 421 (498)
Q Consensus 345 gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~---~v~H~fsH~~l~l~ 421 (498)
.++|+.+.|. +.|+||||+++++|++ ++|+.||+.||.|+++.. ...... ...| +++..++++
T Consensus 14 ~~ll~~r~~~-----~~~~lPgG~ve~~E~~---~~aa~Rel~EEtGl~~~~-----~~~~~~~~~~~~~-~~~~~~~l~ 79 (126)
T cd04663 14 LELLVFEHPL-----AGFQIVKGTVEPGETP---EAAALRELQEESGLPSFL-----SDYILHVWERRFY-QKRHFWHLT 79 (126)
T ss_pred EEEEEEEcCC-----CcEECCCccCCCCCCH---HHHHHHHHHHHHCCeeee-----eeecceeeeCCEe-eccEEEEEE
Confidence 3788887764 3499999999999876 899999999999998620 111112 2222 566666666
Q ss_pred EEEEEE----EEeCCcccccccccCCCCcee--eecCCCcCCC
Q 010868 422 VELLVL----CIKGGIDKWVEKQDKGTLSWK--CVDGGTLASM 458 (498)
Q Consensus 422 ~~~~~~----~~~g~~~~~~~~~~~e~~~~~--Wv~~~eL~~~ 458 (498)
++.+.. .+.+ .+...+++.++ |++++++...
T Consensus 80 ~~~~~~~~~~~~~~------~~~~~E~~~i~~~Wv~l~~~~~~ 116 (126)
T cd04663 80 LCEVDQDLPDSWVH------FVQDDGGHEFRFFWVDLASCLDE 116 (126)
T ss_pred EEEecCCCcccccC------cccCCCCceEEEEEEcccccccc
Confidence 544410 1121 12335666676 9999998543
No 92
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=98.63 E-value=2.8e-07 Score=86.22 Aligned_cols=121 Identities=22% Similarity=0.300 Sum_probs=97.3
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCc--HH-HHHHHHHHHHHHHHc-----
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGY--YR-RARFLLEGAKMIVAE----- 185 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~--~~-RA~~L~~~a~~i~~~----- 185 (498)
.+-|.-|.-+||.+|++...+..+...+-+ .+..++.|||.+.++.+|| |+ ||++|+++-+.+-+-
T Consensus 37 e~lf~ELsFCILTANsSA~~~~~~q~~lG~------gfly~~~eEL~e~Lk~~g~Rf~n~raeyIVeaR~~~~~lk~~v~ 110 (210)
T COG1059 37 EDLFKELSFCILTANSSATMGLRAQNELGD------GFLYLSEEELREKLKEVGYRFYNVRAEYIVEAREKFDDLKIIVK 110 (210)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHhcc------ccccCCHHHHHHHHHHhcchhcccchHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999887776644 4455688999999999976 56 999999977766421
Q ss_pred CCCCCC-chhhhh-cCCCCcHHHHHHHHHH-hcCCcccccccchhhHHHhhhcccCCCC
Q 010868 186 GDGFPN-TVSDLR-KVPGIGNYTAGAIASI-AFKEVVPVVDGNVIRVLARLKAISANPK 241 (498)
Q Consensus 186 ~g~~p~-~~~~L~-~LpGIG~~TA~~il~~-a~~~p~~~VD~~v~Rvl~Rl~~i~~~~~ 241 (498)
....+. +++.|. .++|||.+-|+.+|-- ++ ...+++|.||.|-+.|.|.++..|+
T Consensus 111 ~~~~~~vaRE~Lv~nikGiGyKEASHFLRNVG~-~D~AIlDrHIlr~l~r~g~i~e~~k 168 (210)
T COG1059 111 ADENEKVARELLVENIKGIGYKEASHFLRNVGF-EDLAILDRHILRWLVRYGLIDENPK 168 (210)
T ss_pred cCcchHHHHHHHHHHcccccHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHhcccccCcc
Confidence 112333 678888 8999999999999854 55 6788899999999999999987754
No 93
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.61 E-value=4.2e-07 Score=81.24 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=40.2
Q ss_pred CCeEEEEecCCC---CCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCC
Q 010868 344 DGVFILVKRRDE---GLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPR 395 (498)
Q Consensus 344 ~gkvLI~KRp~~---gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~ 395 (498)
..+|||.+|... ..-.|.|+||||.++.+|++ .+++.||+.||+|+++.
T Consensus 14 ~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~---~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 14 RIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDP---LLAAKREFSEETGFCVD 65 (126)
T ss_pred cEEEEEEEccCccccCCCCCEEECCcccCCCCcCH---HHHHHHHHHHHhCCcce
Confidence 457999987442 23468999999999999876 89999999999999864
No 94
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.60 E-value=3.4e-07 Score=81.03 Aligned_cols=94 Identities=17% Similarity=0.042 Sum_probs=62.4
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~ 422 (498)
.++++|+.++. .+-|+||||+++.+|+. ++|+.||+.||.|+.+. ....++.+.-.........++
T Consensus 9 ~~~~vLl~~~~-----~~~w~lPgG~ve~gE~~---~~aa~REl~EE~G~~~~------~~~~l~~~~~~~~~~~~~~~~ 74 (118)
T cd04665 9 YDDGLLLVRHK-----DRGWEFPGGHVEPGETI---EEAARREVWEETGAELG------SLTLVGYYQVDLFESGFETLV 74 (118)
T ss_pred ECCEEEEEEeC-----CCEEECCccccCCCCCH---HHHHHHHHHHHHCCccC------ceEEEEEEEecCCCCcEEEEE
Confidence 46899999875 35799999999999876 78999999999999875 345555433222212334556
Q ss_pred EEEEEEEeCCcccccccccCCCCceeeecCCCc
Q 010868 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTL 455 (498)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL 455 (498)
|.+.+ ..+... ....|.....|++.+..
T Consensus 75 y~a~~-~~~~~~----~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 75 YPAVS-AQLEEK----ASYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEEE-Eecccc----cccccccCcEEeccCCc
Confidence 66654 222111 12356777889886554
No 95
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=98.60 E-value=2.7e-07 Score=87.09 Aligned_cols=104 Identities=13% Similarity=-0.072 Sum_probs=69.2
Q ss_pred CCeEEEEecCCCC-CCCccc-ccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC--Ce---
Q 010868 344 DGVFILVKRRDEG-LLAGLW-EFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--HI--- 416 (498)
Q Consensus 344 ~gkvLI~KRp~~g-llaGLW-EFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs--H~--- 416 (498)
++++|++||...+ .++|+| ++|+|.++.+|++ .+|+.||++||+|+++.... ....++.+.+.|. ..
T Consensus 47 ~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~---~~aA~REl~EE~Gl~~~~~~---~l~~~g~~~~~~~~~~~~~~ 120 (180)
T cd03676 47 GLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGP---EETLVKECDEEAGLPEDLVR---QLKPVGVVSYLREGEAGGLQ 120 (180)
T ss_pred CeEEEEEeccCCCCCCCCceeeecccCCCCCCCH---HHHHHHHHHHHhCCCHHHHh---hceeccEEEEEEEcCCCcEe
Confidence 4899999999875 689999 6999999999876 78999999999999875110 0223444444442 11
Q ss_pred EEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCC
Q 010868 417 RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 417 ~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (498)
+...++|.+.+ ..... ..+...|..++.|++.+++..
T Consensus 121 ~e~~~~f~~~~--~~~~~--~~~~~~Ev~~~~~~~~~el~~ 157 (180)
T cd03676 121 PEVEYVYDLEL--PPDFI--PAPQDGEVESFRLLTIDEVLR 157 (180)
T ss_pred eeEEEEEEEEc--CCCCe--eCCCCCcEeEEEEECHHHHHH
Confidence 12345565542 22111 123345678899999988753
No 96
>PLN02709 nudix hydrolase
Probab=98.49 E-value=2.8e-07 Score=89.84 Aligned_cols=102 Identities=18% Similarity=0.042 Sum_probs=66.6
Q ss_pred CCeEEEEecCCCC-CCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEE
Q 010868 344 DGVFILVKRRDEG-LLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (498)
Q Consensus 344 ~gkvLI~KRp~~g-llaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~ 422 (498)
+-++|+.+|+..- .++|.|.||||++|+++ ++..++..||+.||+|+... ..+.++.....++...+.+++
T Consensus 50 ~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D--~~~~~tAlRE~~EEiGl~~~------~v~vlg~L~~~~t~sg~~V~P 121 (222)
T PLN02709 50 ELRVILTKRSSTLSSHPGEVALPGGKRDEED--KDDIATALREAREEIGLDPS------LVTIISVLEPFVNKKGMSVAP 121 (222)
T ss_pred ceEEEEEEcCCCCCCCCCCccCCCcccCCCC--CCHHHHHHHHHHHHHCCCch------heEEeeecCCeECCCCCEEEE
Confidence 4489999998753 58999999999999874 23468888999999999876 345555555555555566788
Q ss_pred EEEEEEEeCCcccccccccCCCCceeeecCCCc
Q 010868 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTL 455 (498)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL 455 (498)
|++.+...... . ..+...|...+-||+.++|
T Consensus 122 ~V~~~~~~~~~-~-~~~np~EV~~vf~vPL~~l 152 (222)
T PLN02709 122 VIGFLHDKKAF-K-PLPNPAEVEEIFDVPLEMF 152 (222)
T ss_pred EEEEecCCCCc-c-ccCChhhhheeEEecHHHH
Confidence 77654210000 0 0122234555666665544
No 97
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.43 E-value=1.5e-06 Score=86.41 Aligned_cols=127 Identities=12% Similarity=0.008 Sum_probs=74.3
Q ss_pred cCCCeEEEEecCCCC-CCCcccccCc-cccCCCCCh--------------hhHHHHHHHHHHHhcCCCCCCCcccccccc
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWEFPS-IILDGETDI--------------TTRREAAECFLKKSFNLDPRNNCSIILRED 405 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWEFPg-gkve~~e~~--------------e~~~~aL~rel~EElgi~v~~~~~~~~~~~ 405 (498)
+.+|++||+||.+.+ .++|+|+... |-+..|+++ .+..+|..||+.||+|+.+.... ......
T Consensus 65 n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~-~~~l~~ 143 (247)
T PLN02552 65 NSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVP-VDQFTF 143 (247)
T ss_pred cCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCccccc-ccccee
Confidence 678999999998854 7999996552 222222111 12568899999999999854100 000233
Q ss_pred cccEEEEcCC------------eEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC-------CCChHHHH
Q 010868 406 VGEFVHIFSH------------IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM-------GLTSGVRK 466 (498)
Q Consensus 406 l~~v~H~fsH------------~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~-------~fp~a~~k 466 (498)
++.+.+.... ..+...+|. . ...++. +.++..|..+++|++++++..+ .|.+..+.
T Consensus 144 ~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~-~~~~~~---l~lq~eEV~~~~wvs~~el~~~~~~~~~~~~tpw~~~ 218 (247)
T PLN02552 144 LTRLHYKAADDVTHGPDGKWGEHELDYLLFI-R-PVRDVK---VNPNPDEVADVKYVNREELKEMMRKESGLKLSPWFRL 218 (247)
T ss_pred eeEEEEecccccccccCCCccceEEEEEEEE-E-ecCCCc---ccCCHHHhheEEEEeHHHHHHHHhhcCCcccCHHHHH
Confidence 4444444332 122222221 1 121111 1344457788999999998765 28888888
Q ss_pred HHHHHHhh
Q 010868 467 VYTMVQKF 474 (498)
Q Consensus 467 il~~L~~~ 474 (498)
+++.+...
T Consensus 219 ~~~~~l~~ 226 (247)
T PLN02552 219 IVDNFLMK 226 (247)
T ss_pred HHHHHHHH
Confidence 88776544
No 98
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=98.41 E-value=4.9e-07 Score=86.16 Aligned_cols=104 Identities=7% Similarity=-0.031 Sum_probs=63.1
Q ss_pred CCCeEEEEecCCCCC-----CCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeE
Q 010868 343 PDGVFILVKRRDEGL-----LAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIR 417 (498)
Q Consensus 343 ~~gkvLI~KRp~~gl-----laGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~ 417 (498)
.+++||+.+.-..+. -.++||||+|.++++|++ ++|..||+.||.|+.+. ..+.++.+.-......
T Consensus 55 ~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~---~~aA~REl~EEtG~~~~------~~~~~~~~~~~~g~~~ 125 (185)
T TIGR00052 55 KKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESP---EDVARREAIEEAGYQVK------NLRKLLSFYSSPGGVT 125 (185)
T ss_pred CCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCH---HHHHHHHccccccceec------ceEEEEEEEcCCCCCc
Confidence 357888877543333 468999999999999877 89999999999999875 3344443322222223
Q ss_pred EEEEEEEEEEEEeCCcc-cccccccCCCCceeeecCCCcCC
Q 010868 418 LKVHVELLVLCIKGGID-KWVEKQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 418 l~l~~~~~~~~~~g~~~-~~~~~~~~e~~~~~Wv~~~eL~~ 457 (498)
..+++|.+++ .++.. ........|..+..|++.+++.+
T Consensus 126 ~~~~~f~a~~--~~~~~~~~~~~~~~E~ie~~~~~~~e~~~ 164 (185)
T TIGR00052 126 ELIHLFIAEV--DDNQAAGIGGGADEEEIEVLHLVFSQALQ 164 (185)
T ss_pred EEEEEEEEEE--chhhcCCCCCCCCccceEEEEeCHHHHHH
Confidence 4567777753 21110 00001113445567777766644
No 99
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.38 E-value=2.4e-06 Score=74.73 Aligned_cols=45 Identities=36% Similarity=0.643 Sum_probs=40.8
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHH-HHHHHHHHhcCCCCC
Q 010868 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRRE-AAECFLKKSFNLDPR 395 (498)
Q Consensus 345 gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~-aL~rel~EElgi~v~ 395 (498)
+++|+.+|...+ |.|+||||+++.+|+. .+ |+.||+.||+|+.+.
T Consensus 24 ~~vl~~~~~~~~---~~~~~PgG~ve~~e~~---~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 24 GEVLLAQRRDDG---GLWELPGGKVEPGEEL---PEEAAARELEEETGLRVK 69 (161)
T ss_pred CEEeEEEccccC---CceecCCcccCCCCch---HHHHHHHHHHHHhCCeee
Confidence 899999999877 9999999999998876 55 999999999999875
No 100
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=98.34 E-value=1.6e-07 Score=62.91 Aligned_cols=27 Identities=44% Similarity=0.671 Sum_probs=23.8
Q ss_pred CCCCCchhhhhcCCCCcHHHHHHHHHH
Q 010868 187 DGFPNTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 187 g~~p~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
|.+|.++++|++|||||+|||++|+.|
T Consensus 4 g~~pas~eeL~~lpGIG~~tA~~I~~~ 30 (30)
T PF00633_consen 4 GLIPASIEELMKLPGIGPKTANAILSF 30 (30)
T ss_dssp HHHTSSHHHHHTSTT-SHHHHHHHHHH
T ss_pred CcCCCCHHHHHhCCCcCHHHHHHHHhC
Confidence 457899999999999999999999986
No 101
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=98.33 E-value=2.3e-06 Score=79.32 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=52.5
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVE 423 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~ 423 (498)
++++|+.++.. ..||||||+++++|++ ++|+.||+.||.|..+. ....++.+.-.-.......++|
T Consensus 34 ~~~~LL~~~~~-----~~~elPgG~vE~gEt~---~eaA~REl~EETG~~~~------~~~~lg~~~~~~~~~~~~~~vf 99 (156)
T TIGR02705 34 KDQWLLTEHKR-----RGLEFPGGKVEPGETS---KEAAIREVMEETGAIVK------ELHYIGQYEVEGESTDFVKDVY 99 (156)
T ss_pred CCEEEEEEEcC-----CcEECCceecCCCCCH---HHHHHHHHHHHhCcEee------eeEEEEEEEecCCCcEEEEEEE
Confidence 56888887642 3499999999999877 89999999999999876 4556665544443445667778
Q ss_pred EEEE
Q 010868 424 LLVL 427 (498)
Q Consensus 424 ~~~~ 427 (498)
.+++
T Consensus 100 ~A~~ 103 (156)
T TIGR02705 100 FAEV 103 (156)
T ss_pred EEEE
Confidence 7764
No 102
>PLN02791 Nudix hydrolase homolog
Probab=98.17 E-value=7.3e-06 Score=92.68 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=67.8
Q ss_pred CCeEEEEecCC-CCCCCccccc-CccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEc--CC--e-
Q 010868 344 DGVFILVKRRD-EGLLAGLWEF-PSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF--SH--I- 416 (498)
Q Consensus 344 ~gkvLI~KRp~-~gllaGLWEF-Pggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~f--sH--~- 416 (498)
++++|++||.. +..++|+|++ |||.++.||+. .++..||++||+|+.+... ....++.+.+.+ .+ +
T Consensus 44 ~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~---~eAA~REL~EELGI~l~~~----~l~~l~~~~~~~~~~~g~~~ 116 (770)
T PLN02791 44 TQELLLQRRADCKDSWPGQWDISSAGHISAGDTS---LLSAQRELEEELGIILPKD----AFELLFVFLQECVINDGKFI 116 (770)
T ss_pred CCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCH---HHHHHHHHHHHhCCCCChh----heeeeeeEEEEeeccCCCcc
Confidence 68999999976 4579999999 79999999876 6889999999999986311 122333322211 11 0
Q ss_pred -EEEEEEEEEEEEEeCCcc-cccccccCCCCceeeecCCCcC
Q 010868 417 -RLKVHVELLVLCIKGGID-KWVEKQDKGTLSWKCVDGGTLA 456 (498)
Q Consensus 417 -~l~l~~~~~~~~~~g~~~-~~~~~~~~e~~~~~Wv~~~eL~ 456 (498)
+--.++|.+.. .+..+ ..+.++..|..+++|++.+++.
T Consensus 117 e~E~~~VYlv~~--~~~~p~~~~~lq~eEV~~v~wvsl~El~ 156 (770)
T PLN02791 117 NNEYNDVYLVTT--LDPIPLEAFTLQESEVSAVKYMSIEEYK 156 (770)
T ss_pred eeeEEEEEEEEE--CCCCCcccCCCChhhhheeEEEcHHHHH
Confidence 11235565542 12111 1123455688899999998885
No 103
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=98.16 E-value=7.1e-06 Score=79.30 Aligned_cols=90 Identities=7% Similarity=-0.058 Sum_probs=58.4
Q ss_pred CcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEEEEEEEEeCCcccccc
Q 010868 359 AGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVE 438 (498)
Q Consensus 359 aGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~~~~~~~~g~~~~~~~ 438 (498)
+-+||||+|.+++||++ ++|..|||.||.|..+. ..++++.+........-.+|+|+..............
T Consensus 81 ~~~lE~PAG~vd~gE~p---~~aA~REL~EETGy~a~------~~~~l~~~~~spg~~~e~~~~fla~~~~~~~~~~~~~ 151 (202)
T PRK10729 81 PWLLEMVAGMIEEGESV---EDVARREAIEEAGLIVG------RTKPVLSYLASPGGTSERSSIMVGEVDATTASGIHGL 151 (202)
T ss_pred CeEEEccceEcCCCCCH---HHHHHHHHHHHhCceee------EEEEEEEEEcCCCcCceEEEEEEEEEcchhcccCCCC
Confidence 46899999999999877 79999999999999875 4455555555544444566777765311100000001
Q ss_pred cccCCCCceeeecCCCcCC
Q 010868 439 KQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 439 ~~~~e~~~~~Wv~~~eL~~ 457 (498)
....|..++.|++.+++..
T Consensus 152 ~de~E~i~v~~~~~~e~~~ 170 (202)
T PRK10729 152 ADENEDIRVHVVSREQAYQ 170 (202)
T ss_pred CCCCCceEEEEEcHHHHHH
Confidence 1224455688999887754
No 104
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.09 E-value=2.6e-05 Score=74.32 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=37.0
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCC
Q 010868 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDP 394 (498)
Q Consensus 345 gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v 394 (498)
=+||+.||+.. |.|.||||.++.+|+. .+|+.||+.||.++++
T Consensus 49 l~vLl~~r~~~----g~walPGG~v~~~E~~---~~aa~Rel~EEt~l~l 91 (186)
T cd03670 49 LQFVAIKRPDS----GEWAIPGGMVDPGEKI---SATLKREFGEEALNSL 91 (186)
T ss_pred eEEEEEEeCCC----CcCcCCeeeccCCCCH---HHHHHHHHHHHHcccc
Confidence 38999999863 7899999999998766 8999999999997653
No 105
>PF10576 EndIII_4Fe-2S: Iron-sulfur binding domain of endonuclease III; InterPro: IPR003651 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs. The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The iron-sulphur cluster loop (FCL) is also found in DNA-(apurinic or apyrimidinic site) lyase, a subfamily of endonuclease III. The enzyme has both apurinic and apyrimidinic endonuclease activity and a DNA N-glycosylase activity. It cuts damaged DNA at cytosines, thymines and guanines, and acts on the damaged strand 5' of the damaged site. The enzyme binds a 4Fe-4S cluster which is not important for the catalytic activity, but is probably involved in the alignment of the enzyme along the DNA strand.; GO: 0004519 endonuclease activity, 0051539 4 iron, 4 sulfur cluster binding; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A 2ABK_A 1KG7_A 1KG2_A 1MUN_A ....
Probab=97.60 E-value=1.7e-05 Score=46.10 Aligned_cols=17 Identities=47% Similarity=1.351 Sum_probs=11.6
Q ss_pred ccCCCCCCCCCCCcccC
Q 010868 277 CTPLNPNCTSCPVSDKC 293 (498)
Q Consensus 277 C~~~~P~C~~CpL~~~C 293 (498)
|++++|+|+.|||++.|
T Consensus 1 Ctar~P~C~~Cpl~~~C 17 (17)
T PF10576_consen 1 CTARKPKCEECPLADYC 17 (17)
T ss_dssp S-SSS--GGG-TTGGG-
T ss_pred CcCCCCccccCCCcccC
Confidence 89999999999999988
No 106
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=97.46 E-value=0.00053 Score=65.76 Aligned_cols=104 Identities=8% Similarity=-0.057 Sum_probs=58.2
Q ss_pred CCeEEEEecCCCCC------CCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeE
Q 010868 344 DGVFILVKRRDEGL------LAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIR 417 (498)
Q Consensus 344 ~gkvLI~KRp~~gl------laGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~ 417 (498)
+++|++.+---.+. -+=.||||+|.++++ ++ ++|..|||.||.|..+. ..+.++.+.=.-..-.
T Consensus 57 ~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p---~~aA~REL~EETGy~a~------~~~~l~~~~~spG~s~ 126 (191)
T PRK15009 57 KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EP---EVCIRKEAIEETGYEVG------EVRKLFELYMSPGGVT 126 (191)
T ss_pred CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CH---HHHHHHHHHHhhCCccc------eEEEeeEEEcCCcccC
Confidence 55766654322233 345799999999965 44 68999999999999875 3344443321111112
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC
Q 010868 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 418 l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
=.+|+|.++.......... .....|..+..|++.+++.++
T Consensus 127 e~~~lf~a~~~~~~~~~~~-~~de~E~iev~~~~~~e~~~~ 166 (191)
T PRK15009 127 ELIHFFIAEYSDSQRANAG-GGVEDEDIEVLELPFSQALEM 166 (191)
T ss_pred cEEEEEEEEECchhcccCC-CCCCCceEEEEEEcHHHHHHH
Confidence 2356666653101100000 011234556789988887543
No 107
>PLN03143 nudix hydrolase; Provisional
Probab=97.33 E-value=0.00073 Score=68.76 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=35.8
Q ss_pred eEEEEecCCCCCCCcccccCccccCCC-CChhhHHHHHHHHHHHhcCCCCC
Q 010868 346 VFILVKRRDEGLLAGLWEFPSIILDGE-TDITTRREAAECFLKKSFNLDPR 395 (498)
Q Consensus 346 kvLI~KRp~~gllaGLWEFPggkve~~-e~~e~~~~aL~rel~EElgi~v~ 395 (498)
+++++++..-..-.-.||||+|.+|++ +++ .++..||++||.|+.+.
T Consensus 144 ~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp---~~aA~REL~EETG~~~~ 191 (291)
T PLN03143 144 YAVLTEQVRVPVGKFVLELPAGMLDDDKGDF---VGTAVREVEEETGIKLK 191 (291)
T ss_pred EEEEEEeEecCCCcEEEEecccccCCCCCCH---HHHHHHHHHHHHCCccc
Confidence 377766655444445899999999964 554 78899999999999763
No 108
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=97.32 E-value=0.00051 Score=66.84 Aligned_cols=105 Identities=19% Similarity=0.063 Sum_probs=70.1
Q ss_pred CCeEEEEecCCC-CCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEE
Q 010868 344 DGVFILVKRRDE-GLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (498)
Q Consensus 344 ~gkvLI~KRp~~-gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~ 422 (498)
+-++|++||... ..+.|-=.||||+.+..+ .+..++..||-.||.|++.. ..+.++...--+.-..+.+.+
T Consensus 57 ~l~vLltkRSr~LrshsGev~fPGG~~d~~D--~s~~~tAlREt~EEIGl~~~------~~~~~g~l~~~~~r~~~~v~p 128 (246)
T KOG3069|consen 57 ELSVLLTKRSRTLRSHSGEVCFPGGRRDPHD--KSDIQTALRETEEEIGLDPE------LVDVLGALPPFVLRSGWSVFP 128 (246)
T ss_pred ceEEEEEeccccccccCCceeCCCCcCCccc--cchHHHHHHHHHHHhCCCHH------HhhhhhhccceeeccCcccce
Confidence 358999999875 689999999999998764 33456777999999999886 445555555445445566666
Q ss_pred EEEEEEEeCCcccccccccCCCCceeeecCCCcCC
Q 010868 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (498)
+++-+... .+.........|....-||+.+++-.
T Consensus 129 ~v~~l~~~-~~l~~~~ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 129 VVGFLSDK-KILPSLRLNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred eEEEEecc-cccccccCCchheeeeeeeeHHHHhh
Confidence 66543212 11111123445667788999888744
No 109
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.00034 Score=70.17 Aligned_cols=99 Identities=10% Similarity=0.114 Sum_probs=73.6
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVE 423 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~ 423 (498)
++++||.+++.. ..|+|.-=-|-||.||+. |+|+.||+.||.|+.|. -.++++...+-|+|--+ .-|
T Consensus 154 ~~~ilLa~~~~h--~~g~yS~LAGFVE~GETl---E~AV~REv~EE~Gi~V~------~vrY~~SQPWPfP~SLM--igf 220 (279)
T COG2816 154 GDEILLARHPRH--FPGMYSLLAGFVEPGETL---EQAVAREVFEEVGIKVK------NVRYVGSQPWPFPHSLM--LGF 220 (279)
T ss_pred CCceeecCCCCC--CCcceeeeeecccCCccH---HHHHHHHHHHhhCeEEe------eeeEEeccCCCCchhhh--hhh
Confidence 456999999865 499999999999999755 89999999999999998 45677777777888643 333
Q ss_pred EEEEEEeCCcccccccccCCCCceeeecCCC-cCCCCC
Q 010868 424 LLVLCIKGGIDKWVEKQDKGTLSWKCVDGGT-LASMGL 460 (498)
Q Consensus 424 ~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~e-L~~~~f 460 (498)
.... ..|.+. +...|-.+.+|++.+| |..++-
T Consensus 221 ~aey-~sgeI~----~d~~Eleda~WFs~~evl~~L~~ 253 (279)
T COG2816 221 MAEY-DSGEIT----PDEGELEDARWFSRDEVLPALPP 253 (279)
T ss_pred eeee-cccccc----CCcchhhhccccCHhHHhhhcCC
Confidence 3332 334322 2335677889999999 777774
No 110
>smart00525 FES FES domain. iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3)
Probab=96.86 E-value=0.00044 Score=44.62 Aligned_cols=22 Identities=50% Similarity=1.244 Sum_probs=20.1
Q ss_pred hccCCCCCCCCCCCcccChhhh
Q 010868 276 ICTPLNPNCTSCPVSDKCQAYS 297 (498)
Q Consensus 276 iC~~~~P~C~~CpL~~~C~~~~ 297 (498)
+|++++|+|+.|||+..|.+|.
T Consensus 1 vC~ar~P~C~~Cpl~~~C~~~~ 22 (26)
T smart00525 1 ICTARKPRCDECPLKDLCPAYX 22 (26)
T ss_pred CccCCCCCCCCCcCHHHhhhhh
Confidence 6999999999999999999754
No 111
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=96.38 E-value=0.006 Score=57.05 Aligned_cols=96 Identities=17% Similarity=0.351 Sum_probs=60.8
Q ss_pred cCCCeEEEEecCC-CCCCCcccc-----cCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC
Q 010868 342 QPDGVFILVKRRD-EGLLAGLWE-----FPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH 415 (498)
Q Consensus 342 ~~~gkvLI~KRp~-~gllaGLWE-----FPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH 415 (498)
+.+|++||+||.. +..|.|.|- -|+ ++ ++...|.+|-+..||||++.. ....+.+++
T Consensus 42 ne~g~LLltrRA~~K~twP~vWTNSvCsHP~----~~---es~~~A~~rRl~~ELGie~~~----------~d~~~il~r 104 (185)
T COG1443 42 NERGQLLLTRRALSKKTWPGVWTNSVCSHPL----PG---ESNEDAARRRLAYELGIEPDQ----------YDKLEILPR 104 (185)
T ss_pred CCCCceeeehhhhhcccCcccccccccCCCc----CC---CchHHHHHHHHHHHhCCCCcc----------cCccccccc
Confidence 6789999999987 468999995 233 23 334788999999999998751 122344555
Q ss_pred eEEEE---------E-EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC
Q 010868 416 IRLKV---------H-VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 416 ~~l~l---------~-~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
|+..- . ++++...... .+.+...|.++++|++++++...
T Consensus 105 f~YrA~~~~~~~E~Eic~V~~~~~~~----~~~~npdEV~~~~wv~~e~l~~~ 153 (185)
T COG1443 105 FRYRAADPDGIVENEICPVLAARLDS----ALDPNPDEVMDYRWVSPEDLKEM 153 (185)
T ss_pred eEEeccCCCCcceeeeeeEEEEeecC----CCCCChHHhhheeccCHHHHHHh
Confidence 54321 0 1111111111 12345567889999999988653
No 112
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=96.25 E-value=0.007 Score=61.42 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=42.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCC
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPR 395 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~ 395 (498)
+++|+.++-.| ..+.-+|||--+-|-+|+||+. ++|.+||.+||.|++|+
T Consensus 196 ~~d~~~~LL~R-~~r~~~gl~t~lAGFlEpGES~---eeav~REtwEEtGi~V~ 245 (345)
T KOG3084|consen 196 DHDGKHALLGR-QKRYPPGLWTCLAGFLEPGESI---EEAVRRETWEETGIEVE 245 (345)
T ss_pred cCCCCEeeeec-ccCCCCchhhhhhccCCccccH---HHHHHHHHHHHhCceee
Confidence 56776666666 5678889999999999999765 89999999999999987
No 113
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=95.63 E-value=0.02 Score=52.07 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=36.2
Q ss_pred eEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCC
Q 010868 346 VFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPR 395 (498)
Q Consensus 346 kvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~ 395 (498)
+||+.+=+.+ +.-|-||+|-+|++|+. .+|..||..||-|+.-.
T Consensus 25 eVLlvsSs~~---~~~wi~PKGGwE~dE~~---~eAA~REt~EEAGv~G~ 68 (145)
T KOG2839|consen 25 EVLLVSSSKK---PHRWIVPKGGWEPDESV---EEAALRETWEEAGVKGK 68 (145)
T ss_pred EEEEEecCCC---CCCccCCCCCCCCCCCH---HHHHHHHHHHHhCceee
Confidence 8999886553 35799999999998766 67888999999998754
No 114
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=94.68 E-value=0.12 Score=49.43 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=46.6
Q ss_pred eEEEEe--cCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEE
Q 010868 346 VFILVK--RRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVE 423 (498)
Q Consensus 346 kvLI~K--Rp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~ 423 (498)
.++++| ||+-| +=--|||-|-++.+|+. +.|..|||+||.|..-. .....+..-..--||+-.+.|.++
T Consensus 89 ~ivL~kQfRpP~G--k~ciElPAGLiD~ge~~---~~aAiREl~EEtGy~gk----v~~~s~~~f~DPGltn~~~~iv~v 159 (225)
T KOG3041|consen 89 YIVLVKQFRPPTG--KICIELPAGLIDDGEDF---EGAAIRELEEETGYKGK----VDMVSPTVFLDPGLTNCNLCIVVV 159 (225)
T ss_pred EEEEEEeecCCCC--cEEEEcccccccCCCch---HHHHHHHHHHHhCccce----eeeccccEEcCCCCCCCceEEEEE
Confidence 455544 66644 22479999999999876 78999999999998632 111122222223578888877765
Q ss_pred EEE
Q 010868 424 LLV 426 (498)
Q Consensus 424 ~~~ 426 (498)
.++
T Consensus 160 ~id 162 (225)
T KOG3041|consen 160 DID 162 (225)
T ss_pred Eec
Confidence 443
No 115
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=94.47 E-value=0.021 Score=57.86 Aligned_cols=115 Identities=16% Similarity=0.158 Sum_probs=67.7
Q ss_pred cCCCeEEEEecCC-CCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCe----
Q 010868 342 QPDGVFILVKRRD-EGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI---- 416 (498)
Q Consensus 342 ~~~gkvLI~KRp~-~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~---- 416 (498)
+.+++||+.|-.+ .-...|.|=||+|.|+++|+. -+.+.||++||.|++... ..+-.++|+-+..
T Consensus 124 n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i---~~gavrEvkeetgid~ef-------~eVla~r~~H~~~~~~~ 193 (295)
T KOG0648|consen 124 NKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDI---WHGAVREVKEETGIDTEF-------VEVLAFRRAHNATFGLI 193 (295)
T ss_pred cCCceeEEEEecccceeecccccccceEecccccc---hhhhhhhhHHHhCcchhh-------hhHHHHHhhhcchhhcc
Confidence 5568999987422 235789999999999988765 688899999999997651 1122222222211
Q ss_pred EEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCC--ChHHHHHHHH
Q 010868 417 RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGL--TSGVRKVYTM 470 (498)
Q Consensus 417 ~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~f--p~a~~kil~~ 470 (498)
+-++ ++.|.+...+ ... .+...+-.+..|++.++..+.++ +..+-+....
T Consensus 194 ksd~-f~~c~L~p~s-~~i--~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~~~ 245 (295)
T KOG0648|consen 194 KSDM-FFTCELRPRS-LDI--TKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLAAG 245 (295)
T ss_pred cccc-eeEEEeeccc-ccc--chhHHHHHHHhcccHHHhhcccccccchhhHHHhh
Confidence 2222 2345443221 110 11222334458999999888777 4444444333
No 116
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1.
Probab=94.45 E-value=0.031 Score=35.97 Aligned_cols=21 Identities=48% Similarity=0.610 Sum_probs=18.1
Q ss_pred hhhhcCCCCcHHHHHHHHHHh
Q 010868 194 SDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 194 ~~L~~LpGIG~~TA~~il~~a 214 (498)
+.|.++||||+++|+.++.+.
T Consensus 1 ~~L~~i~GiG~k~A~~il~~~ 21 (26)
T smart00278 1 EELLKVPGIGPKTAEKILEAX 21 (26)
T ss_pred ChhhhCCCCCHHHHHHHHHhc
Confidence 368899999999999998754
No 117
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A ....
Probab=93.88 E-value=0.18 Score=40.08 Aligned_cols=56 Identities=32% Similarity=0.364 Sum_probs=39.2
Q ss_pred HHHHHHHhcc-CcHHHHHHHHHHHHHHHHcCCCCCCchhh-hhcCCCCcHHHHHHHHHH
Q 010868 157 EEVNEMWAGL-GYYRRARFLLEGAKMIVAEGDGFPNTVSD-LRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 157 eel~~~i~~l-G~~~RA~~L~~~a~~i~~~~g~~p~~~~~-L~~LpGIG~~TA~~il~~ 213 (498)
+++.+...-. |-..|++...+++..|..-+.++. +.++ +.+|||||+.+|.-|--|
T Consensus 9 ~~la~~~~~~~~~~~r~~aY~~Aa~~i~~l~~~i~-~~~~~~~~l~gIG~~ia~kI~E~ 66 (68)
T PF14716_consen 9 EELADLYELQGGDPFRARAYRRAAAAIKALPYPIT-SGEEDLKKLPGIGKSIAKKIDEI 66 (68)
T ss_dssp HHHHHHHHHTSTSHHHHHHHHHHHHHHHHSSS-HH-SHHHHHCTSTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHhCCHhHh-hHHHHHhhCCCCCHHHHHHHHHH
Confidence 4444555555 444499999999999987533332 3365 999999999999988544
No 118
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=92.84 E-value=0.15 Score=40.44 Aligned_cols=57 Identities=33% Similarity=0.490 Sum_probs=41.1
Q ss_pred HHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHc---CCCCCCchhhhhcCCCCcHHHHHHHHHH
Q 010868 148 IHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE---GDGFPNTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 148 ~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~---~g~~p~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
.-+|-.|+.++|..++.++|.. + |+.|++. .|.+ .+.++|.+++|||.++|+-|..+
T Consensus 7 ~invNta~~~~L~~~ipgig~~-~-------a~~Il~~R~~~g~~-~s~~dL~~v~gi~~~~~~~i~~~ 66 (69)
T TIGR00426 7 RVNINTATAEELQRAMNGVGLK-K-------AEAIVSYREEYGPF-KTVEDLKQVPGIGNSLVEKNLAV 66 (69)
T ss_pred eeECcCCCHHHHHhHCCCCCHH-H-------HHHHHHHHHHcCCc-CCHHHHHcCCCCCHHHHHHHHhh
Confidence 3455668888887777777772 3 3444443 3433 48899999999999999998765
No 119
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=92.12 E-value=0.15 Score=40.10 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=23.5
Q ss_pred HHHHHHcCCCC----CCchhhhhcCCCCcHHHHHHHHHHh
Q 010868 179 AKMIVAEGDGF----PNTVSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 179 a~~i~~~~g~~----p~~~~~L~~LpGIG~~TA~~il~~a 214 (498)
|+.+.+..|.+ -.+.++|.++||||+.+|+.|..|-
T Consensus 16 ak~L~~~f~sl~~l~~a~~e~L~~i~gIG~~~A~si~~ff 55 (64)
T PF12826_consen 16 AKLLAKHFGSLEALMNASVEELSAIPGIGPKIAQSIYEFF 55 (64)
T ss_dssp HHHHHHCCSCHHHHCC--HHHHCTSTT--HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHcCHHHHhccCCcCHHHHHHHHHHH
Confidence 44445554443 3478999999999999999998763
No 120
>PF09674 DUF2400: Protein of unknown function (DUF2400); InterPro: IPR014127 Members of this uncharacterised protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides. The function is unknown and its gene neighbourhoods show little conservation.
Probab=91.72 E-value=0.16 Score=50.32 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=41.8
Q ss_pred ccccccchhhHHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcc
Q 010868 219 VPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGA 274 (498)
Q Consensus 219 ~~~VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~ 274 (498)
.+|+||||.||..+||.+.....+-.+..++-+.+.+ +.+++|-.+-.||-.+|.
T Consensus 176 iiPLDtHv~~var~LGL~~rk~~d~k~A~elT~~lr~-~~p~DPvKYDFAL~~~Gi 230 (232)
T PF09674_consen 176 IIPLDTHVFRVARKLGLLKRKSADWKAARELTEALRE-FDPDDPVKYDFALFRLGI 230 (232)
T ss_pred cccchHhHHHHHHHcCCccCCCccHHHHHHHHHHHHh-cCCCCCcchhhhcccCCc
Confidence 4789999999999999997554444555566555554 567788888888888885
No 121
>TIGR02757 conserved hypothetical protein TIGR02757. Members of this uncharacterized protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides. The function is unknown and its gene neighborhoods show little conservation.
Probab=91.36 E-value=0.16 Score=50.01 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=40.7
Q ss_pred ccccccchhhHHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcc
Q 010868 219 VPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGA 274 (498)
Q Consensus 219 ~~~VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~ 274 (498)
.+|+||||.||..+||.+..+..+-.+..++-+.+.+ +++++|-.+-.||-.+|.
T Consensus 173 iiPLDtH~~rvar~LgL~~Rk~~d~kaa~ElT~~Lr~-~dp~DPvKYDFAL~~lGi 227 (229)
T TIGR02757 173 ILPLDTHVFRIAKKLKLLKRKSYDLKAAIEITEALRE-LNPEDPIKYDFALFRLGQ 227 (229)
T ss_pred eeechHhHHHHHHHhCCcccCchhHHHHHHHHHHHHh-cCCCCCcchhhhcccCCc
Confidence 5789999999999999987544333444455444443 677889899999988885
No 122
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=90.95 E-value=0.94 Score=40.44 Aligned_cols=119 Identities=18% Similarity=0.113 Sum_probs=68.9
Q ss_pred eEEEEecCCCCCCC----cccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCccc--ccccccccEEEEcCCeE-E
Q 010868 346 VFILVKRRDEGLLA----GLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSI--ILREDVGEFVHIFSHIR-L 418 (498)
Q Consensus 346 kvLI~KRp~~glla----GLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~--~~~~~l~~v~H~fsH~~-l 418 (498)
.||+.- |-+-+|+ |-|..|-|+..++|++ ..|.+||+-||+||.+.-.... -..+.-+.+.-.|.|-. +
T Consensus 19 ~VLLvH-PGGPFWa~kD~GAWSIPKGey~~gEdp---~~AArREf~EE~Gi~vdGP~~~lG~~kQ~GGKvVta~~veae~ 94 (161)
T COG4119 19 DVLLVH-PGGPFWAGKDDGAWSIPKGEYTGGEDP---WLAARREFSEEIGICVDGPRIDLGSLKQSGGKVVTAFGVEAEL 94 (161)
T ss_pred EEEEec-CCCCccccCCCCcccccccccCCCcCH---HHHHHHHhhhhhceeecCchhhhhhhccCCCcEEEEEeeeeee
Confidence 566665 5555676 5799999999999887 6788999999999987521100 01133345555665542 1
Q ss_pred EE-----EEEEEEEEEe---CCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhh
Q 010868 419 KV-----HVELLVLCIK---GGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 419 ~l-----~~~~~~~~~~---g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~ 476 (498)
++ ..|.. .|. |.++. . .|.+..-|++..+- ...+....+++++.|.....
T Consensus 95 Dva~~rSntFe~--eWPprSG~M~~---F--PEVDRagWF~l~eA-r~Kil~gQRpfldrL~a~~~ 152 (161)
T COG4119 95 DVADARSNTFEL--EWPPRSGKMRK---F--PEVDRAGWFPLAEA-RTKILKGQRPFLDRLMAHAV 152 (161)
T ss_pred ehhhhhcceeee--ecCCCCCcccc---C--cccccccceecHHH-HhHHhhccchHHHHHHHHhc
Confidence 11 12222 222 21221 1 23445567776663 44566667777777766544
No 123
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=89.44 E-value=0.41 Score=46.48 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=31.2
Q ss_pred eEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhc
Q 010868 346 VFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSF 390 (498)
Q Consensus 346 kvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EEl 390 (498)
+++..||++.| .|-.|||.+++||.. ...|+||+.||.
T Consensus 140 e~vavkr~d~~----~WAiPGGmvdpGE~v---s~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKRPDNG----EWAIPGGMVDPGEKV---SATLKREFGEEA 177 (275)
T ss_pred EEEEEecCCCC----cccCCCCcCCchhhh---hHHHHHHHHHHH
Confidence 68889999775 788999999999754 678889888763
No 124
>PLN02839 nudix hydrolase
Probab=88.92 E-value=1.1 Score=47.07 Aligned_cols=122 Identities=11% Similarity=-0.001 Sum_probs=76.7
Q ss_pred CCCeEEEEecCCC-CCCCcccc-cCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCe-EE-
Q 010868 343 PDGVFILVKRRDE-GLLAGLWE-FPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI-RL- 418 (498)
Q Consensus 343 ~~gkvLI~KRp~~-gllaGLWE-FPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~-~l- 418 (498)
.++++.|.||... ..+.|+|. .-+|-+..|+++ .+++.||..||.|+..... .-..+.+.+.|.+-.- .+
T Consensus 216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp---~etliREa~EEAgLp~~l~---~~~~~~G~VsY~~~~~~g~~ 289 (372)
T PLN02839 216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISC---GENLVKECEEEAGISKAIA---DRAIAVGAVSYMDIDQYCFK 289 (372)
T ss_pred CCeEEEeeccCCCCCCCCChhhhccccCccCCCCH---HHHHHHHHHHHcCCCHHHH---hcceEeEEEEEEEEcCCccc
Confidence 3468999999875 46899986 344556667665 8999999999999975310 0134567776664221 11
Q ss_pred --EEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcC----CCC-C-ChHHHHHHHHHHhh
Q 010868 419 --KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA----SMG-L-TSGVRKVYTMVQKF 474 (498)
Q Consensus 419 --~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~----~~~-f-p~a~~kil~~L~~~ 474 (498)
.+++|-++ +..+.. +.++..|-.++.+++.+|.. +-. | |....-+++.|.+.
T Consensus 290 ~evly~YDLe--LP~df~--P~~qDGEVe~F~Lm~v~EV~~~l~~~~~fKpn~aLViiDFLiRh 349 (372)
T PLN02839 290 RDVLFCYDLE--LPQDFV--PKNQDGEVESFKLIPVAQVANVIRKTSFFKANCSLVIIDFLFRH 349 (372)
T ss_pred cCEEEEeeee--cCCccc--cCCCccceeEEEEecHHHHHHHHHcCCCCCcccHHHHHHHHHHc
Confidence 23444433 333221 13556677889999988875 222 4 34556678888776
No 125
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.60 E-value=0.57 Score=44.98 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=62.9
Q ss_pred cCCCeEEEEecCCCC-CCCcccc-----cCccccCCC--CChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEE-
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWE-----FPSIILDGE--TDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHI- 412 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWE-----FPggkve~~--e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~- 412 (498)
+..|+.|++||...+ .+.|+|- -|.+..++. .+....+.|.+|-|+-||||..+... .-...+++.+.|.
T Consensus 61 ns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~-pee~~~ltrihYkA 139 (225)
T KOG0142|consen 61 NSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVP-PEEFNFLTRIHYKA 139 (225)
T ss_pred cCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccC-HHHcccceeeeeec
Confidence 678999999999865 5788883 565444321 22234567888889999999765210 0011233333332
Q ss_pred -----cCCeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCC
Q 010868 413 -----FSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 413 -----fsH~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (498)
+....|+...+.. +... ..|...|..+++||+.+||..
T Consensus 140 ~sdg~wGEhEiDYiL~~~-----~~~~--~nPnpnEv~e~ryvs~eelke 182 (225)
T KOG0142|consen 140 PSDGIWGEHEIDYILFLV-----KDVT--LNPNPNEVSEIRYVSREELKE 182 (225)
T ss_pred CCCCCcccceeeEEEEEe-----ccCC--CCCChhhhhHhheecHHHHHH
Confidence 2333343333221 2111 134456788999999999865
No 126
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Probab=88.58 E-value=0.17 Score=50.90 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=66.3
Q ss_pred cccccCCCCCcccccccccccchhhhhhhhhhhhcccccccCCCCcchhhhhhcCHHHHHHHHHHHHHHHhhCC------
Q 010868 22 SLTSSSRSTPFEQNSSFWSLTMDNERKTKKKKERQLPEKKTALPLEEEDIEDLFSEKEVKKIRQSLLQWYDKNQ------ 95 (498)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~wy~~~~------ 95 (498)
-+.|++||+|+|.+.||||+| ||+| .+|..+.+.+..-|+..-
T Consensus 108 qgvRlLrQdP~E~lfSFiCSS------------------NNNI-------------aRIT~Mve~fc~~fG~~i~~~dg~ 156 (323)
T KOG2875|consen 108 QGVRLLRQDPIECLFSFICSS------------------NNNI-------------ARITGMVERFCQAFGPRIIQLDGV 156 (323)
T ss_pred hhhHHHhcCcHHHHHHHHhcC------------------CCcH-------------HHHHHHHHHHHHhhCcceEeecCc
Confidence 468999999999999999999 9988 677788887777776431
Q ss_pred --CCCCCCCCcccchhhhhcCChHHHHHHHHHhhhc-------cHHHHHHHHHHHHHhCCC---HHHHHhCCHHHHHHHH
Q 010868 96 --RELPWRERSESDKEEEKEKRAYGVWVSEVMLQQT-------RVQTVIDYYNRWMTKWPT---IHHLAKASLEEVNEMW 163 (498)
Q Consensus 96 --r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT-------~~~~v~~~~~~l~~~fPt---~~~La~a~~eel~~~i 163 (498)
..+|--+ -|.+...-.+. +.+-+....+.+.+..+- ..+|..++.||+.+++
T Consensus 157 ~~h~FPsl~----------------~L~g~~~Ea~LR~~gfGYRAkYI~~ta~~l~~~~g~~~wLqsl~~~~yeear~~L 220 (323)
T KOG2875|consen 157 DYHGFPSLQ----------------ALAGPEVEAELRKLGFGYRAKYISATARALQEKQGGLAWLQSLRKSSYEEAREAL 220 (323)
T ss_pred ccccCccHH----------------HhcCcHhHHHHHHcCcchhHHHHHHHHHHHHHhcccchHHHHHhcccHHHHHHHH
Confidence 1233322 11111111111 233344445566777776 7888888999888776
Q ss_pred ---hccCc
Q 010868 164 ---AGLGY 168 (498)
Q Consensus 164 ---~~lG~ 168 (498)
.|+|+
T Consensus 221 ~~lpGVG~ 228 (323)
T KOG2875|consen 221 CSLPGVGP 228 (323)
T ss_pred hcCCCCcc
Confidence 46676
No 127
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=88.34 E-value=3.5 Score=38.39 Aligned_cols=110 Identities=17% Similarity=0.167 Sum_probs=57.5
Q ss_pred CCCeEEEEecCCCC---CCCcccccCc-cccCCCCChhhHHH----HHHHHHHHhcCCCCCCCcccccccccccEEEEcC
Q 010868 343 PDGVFILVKRRDEG---LLAGLWEFPS-IILDGETDITTRRE----AAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS 414 (498)
Q Consensus 343 ~~gkvLI~KRp~~g---llaGLWEFPg-gkve~~e~~e~~~~----aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs 414 (498)
.+.+|||..|..+| -+.|++..=- |....++..+..++ -+.||++||+++.-+..+ ..+.++-+...-.
T Consensus 70 ~edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q---~~e~lGlINdd~n 146 (203)
T COG4112 70 DEDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQ---ELEFLGLINDDTN 146 (203)
T ss_pred cCCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhh---hheeeeeecCCCc
Confidence 35699999999876 5677776532 22322222222222 267999999988633110 2234443322211
Q ss_pred -CeEEEEEE-EEEEEEEeCCcccccccccCCCCceeeecCCCcCC-CCC
Q 010868 415 -HIRLKVHV-ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS-MGL 460 (498)
Q Consensus 415 -H~~l~l~~-~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~-~~f 460 (498)
-.++++-+ |..++.. ..++...++.-+|+|+..++|.+ |+-
T Consensus 147 eVgkVHiG~lf~~~~k~-----ndvevKEkd~~~~kwik~~ele~~y~~ 190 (203)
T COG4112 147 EVGKVHIGALFLGRGKF-----NDVEVKEKDLFEWKWIKLEELEKFYGV 190 (203)
T ss_pred ccceEEEEEEEEeeccc-----cceeeeecceeeeeeeeHHHHHHHhhh
Confidence 12333322 1121111 11233335567799999999988 443
No 128
>PF05559 DUF763: Protein of unknown function (DUF763); InterPro: IPR008482 This family consists of several uncharacterised bacterial and archaeal proteins of unknown function.
Probab=84.09 E-value=3.8 Score=42.20 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHHh---cCCcccccccchhhHHHhhhcccC
Q 010868 173 RFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIA---FKEVVPVVDGNVIRVLARLKAISA 238 (498)
Q Consensus 173 ~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~a---~~~p~~~VD~~v~Rvl~Rl~~i~~ 238 (498)
+.+.++...+.+ .-|++.++|+.++||||.|..++.+.| ||.|.-.=|-- |..--+|+-+.
T Consensus 251 ~~~~~~l~~~~e---~~p~~feeLL~~~GvGp~TlRALaLvaelIyg~p~s~~DPa--kfsfA~GGKDG 314 (319)
T PF05559_consen 251 RRLWKVLEKAYE---RQPSDFEELLLIKGVGPSTLRALALVAELIYGVPPSFRDPA--KFSFAHGGKDG 314 (319)
T ss_pred HHHHHHHHHHhh---CCccCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCccChh--HHHHhhcCCCC
Confidence 344444444444 348999999999999999999988776 77653222222 66666665544
No 129
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=82.47 E-value=1.7 Score=39.06 Aligned_cols=57 Identities=16% Similarity=0.363 Sum_probs=35.9
Q ss_pred hCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHH
Q 010868 144 KWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 144 ~fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~ 212 (498)
.+...-+|..|+.+++.. + =|.|. +|+.|+ . +|.+ .+.++|+.+||||+++.+.+--
T Consensus 48 ~~~~kIdiN~A~~~el~~-l--pGigP~~A~~IV-------~-nGpf-~sveDL~~V~GIgekqk~~l~k 105 (132)
T PRK02515 48 EFGEKIDLNNSSVRAFRQ-F--PGMYPTLAGKIV-------K-NAPY-DSVEDVLNLPGLSERQKELLEA 105 (132)
T ss_pred hcCCcccCCccCHHHHHH-C--CCCCHHHHHHHH-------H-CCCC-CCHHHHHcCCCCCHHHHHHHHH
Confidence 355666677777777655 2 34444 666665 2 3433 4678888888888876665543
No 130
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.34 E-value=9.2 Score=36.43 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCC--CHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHH
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWP--TIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVA 184 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fP--t~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~ 184 (498)
+.-|+.|+-++|-.=.++.++..-...|.+.|- +++.+|..++++|+.++..-|.-+ |.+.+++=|+.+.+
T Consensus 28 ~~LFE~L~Le~fQAGLSW~tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~ 103 (179)
T TIGR00624 28 VALFERMSLEGFQAGLSWITVLRKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQ 103 (179)
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHH
Confidence 558999999999999999999999999988874 899999999999999999999976 46668888888876
No 131
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=81.19 E-value=8.7 Score=36.84 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCC--CHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHH
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWP--TIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVA 184 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fP--t~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~ 184 (498)
+.-||.|+=+.|-.=.++.++..-...|.+.|- +++.+|..++++|+.++..-|.-+ |.+.+++=|+.+.+
T Consensus 29 ~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA~~~l~ 104 (187)
T PRK10353 29 KKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQ 104 (187)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999988874 899999999999999999999965 56678888887775
No 132
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=80.89 E-value=1.3 Score=34.75 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=18.5
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHh
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a 214 (498)
.+.++|.++||||++.|..|+.+=
T Consensus 11 as~~eL~~lpgi~~~~A~~Iv~~R 34 (65)
T PF12836_consen 11 ASAEELQALPGIGPKQAKAIVEYR 34 (65)
T ss_dssp S-HHHHHTSTT--HHHHHHHHHHH
T ss_pred CCHHHHHHcCCCCHHHHHHHHHHH
Confidence 367899999999999999998774
No 133
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=80.66 E-value=1.7 Score=36.94 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=24.9
Q ss_pred chhhhhcCCCCcHHHHHHHHHHhcCCcccc
Q 010868 192 TVSDLRKVPGIGNYTAGAIASIAFKEVVPV 221 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~~a~~~p~~~ 221 (498)
...+|..|||||+.||.-+...++..+.=.
T Consensus 10 ~~~~L~~iP~IG~a~a~DL~~LGi~s~~~L 39 (93)
T PF11731_consen 10 GLSDLTDIPNIGKATAEDLRLLGIRSPADL 39 (93)
T ss_pred HHHHHhcCCCccHHHHHHHHHcCCCCHHHH
Confidence 457899999999999999998888776443
No 134
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=80.35 E-value=6 Score=37.70 Aligned_cols=71 Identities=14% Similarity=0.264 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCC--CHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHH
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWP--TIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVA 184 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fP--t~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~ 184 (498)
+.-|+.|+-+++-.=.++.++..-...|.+.|- +++.+|..++++|++++..-|.-+ |.+.++.=|+.+.+
T Consensus 24 ~~LFe~L~Le~fQaGLsW~~Il~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA~~~l~ 99 (179)
T PF03352_consen 24 RKLFEMLTLEGFQAGLSWSTILKKREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNARAILK 99 (179)
T ss_dssp HHHHHHHHHHHHTTTS-HHHHHHTHHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999986 799999999999999999988854 78888888888875
No 135
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=79.64 E-value=2.7 Score=37.28 Aligned_cols=61 Identities=30% Similarity=0.486 Sum_probs=41.8
Q ss_pred CCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHH
Q 010868 146 PTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 146 Pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
+.+-+|-.|+.++|..+ .++|- .+|+.|++--.. +|.+ .+.++|..++|||+++++-+.-+
T Consensus 57 ~~~iniNtA~~~eL~~l-pGIG~-~~A~~Ii~~R~~----~g~f-~s~eeL~~V~GIg~k~~~~i~~~ 117 (120)
T TIGR01259 57 LAAVNINAASLEELQAL-PGIGP-AKAKAIIEYREE----NGAF-KSVDDLTKVSGIGEKSLEKLKDY 117 (120)
T ss_pred CCCEeCCcCCHHHHhcC-CCCCH-HHHHHHHHHHHh----cCCc-CCHHHHHcCCCCCHHHHHHHHhc
Confidence 44567788888888653 55554 256666543322 3443 67899999999999999988654
No 136
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=79.56 E-value=4.4 Score=39.12 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=22.1
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
.+.+.|.++||||+|||.-|.+---++
T Consensus 104 ~D~~~L~~vpGIGkKtAeRIIlELkdK 130 (196)
T PRK13901 104 EDIELISKVKGIGNKMAGKIFLKLRGK 130 (196)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 468899999999999999888654444
No 137
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=79.20 E-value=1.6 Score=33.59 Aligned_cols=19 Identities=42% Similarity=0.690 Sum_probs=9.5
Q ss_pred hhhhhcCCCCcHHHHHHHH
Q 010868 193 VSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il 211 (498)
.++|.++||||+++|+.|.
T Consensus 37 ~~~L~~i~Gig~~~a~~i~ 55 (60)
T PF14520_consen 37 PEELAEIPGIGEKTAEKII 55 (60)
T ss_dssp HHHHHTSTTSSHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHH
Confidence 3445555555555555443
No 138
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=78.88 E-value=1.5 Score=41.89 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=22.3
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
.+.+.|.++||||+|||+-|.+---++
T Consensus 105 ~D~~~L~~vpGIGkKtAeRIilELkdK 131 (183)
T PRK14601 105 GDESVLKKVPGIGPKSAKRIIAELSDA 131 (183)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999988655444
No 139
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=78.87 E-value=4.6 Score=40.20 Aligned_cols=103 Identities=20% Similarity=0.162 Sum_probs=59.2
Q ss_pred CCeEEEEecCCCCCCCcccccCcccc-CCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEE--
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIIL-DGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKV-- 420 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkv-e~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l-- 420 (498)
..-|||++|+=+. .+.|-||.+.. +.++ +......+.|..-.|-... -+++...+++...|.++.-....
T Consensus 138 r~LyLLV~~k~g~--~s~w~fP~~~~s~~~~---~lr~~ae~~Lk~~~ge~~~--t~fvgnaP~g~~~~q~pr~~~~e~~ 210 (263)
T KOG4548|consen 138 RKLYLLVKRKFGK--SSVWIFPNRQFSSSEK---TLRGHAERDLKVLSGENKS--TWFVGNAPFGHTPLQSPREMTTEEP 210 (263)
T ss_pred ceEEEEEeeccCc--cceeeCCCcccCCccc---hHHHHHHHHHHHHhcchhh--hheeccCccccccccCccccccccc
Confidence 4568888876443 34999999998 5553 3466666777755554332 12333457776677766443222
Q ss_pred -----EEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCC
Q 010868 421 -----HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG 459 (498)
Q Consensus 421 -----~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~ 459 (498)
.+|.+.+ +.+..++ .... .+|.||+.++|.++-
T Consensus 211 ~~sk~ff~k~~l-v~~~~~k---n~n~--edfvWvTkdel~e~l 248 (263)
T KOG4548|consen 211 VSSKVFFFKASL-VANSNQK---NQNK--EDFVWVTKDELGEKL 248 (263)
T ss_pred ccceeEEeeeee-ccccchh---cccc--cceEEechHHHhhhc
Confidence 2222322 2332221 1222 249999999998864
No 140
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.14 E-value=1.7 Score=41.89 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=22.4
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCCc
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~p 218 (498)
+..+.|.+|||||+|||.=+..+-+..+
T Consensus 8 ~Li~~l~~LPGIG~KsA~RlA~~ll~~~ 35 (195)
T TIGR00615 8 KLIESLKKLPGIGPKSAQRLAFHLLKRD 35 (195)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 3467889999999999998877766554
No 141
>PRK00076 recR recombination protein RecR; Reviewed
Probab=77.81 E-value=1.7 Score=41.89 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=22.7
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCCc
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~p 218 (498)
+..+.|.+|||||+|||.=+..+-+..+
T Consensus 8 ~Li~~l~~LPGIG~KsA~Rla~~ll~~~ 35 (196)
T PRK00076 8 KLIEALRKLPGIGPKSAQRLAFHLLQRD 35 (196)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 3467889999999999998887776554
No 142
>PRK07945 hypothetical protein; Provisional
Probab=77.70 E-value=2.9 Score=43.57 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=40.5
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCC-CCCc-hh-hhhcCCCCcHHHHHHHHHHh
Q 010868 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDG-FPNT-VS-DLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~-~p~~-~~-~L~~LpGIG~~TA~~il~~a 214 (498)
+++..++.-.|=.. |++...++|+.|-.-..+ +.+. .+ +|.+|||||.-||+.|.-+.
T Consensus 8 ~~~a~lle~~~~n~frv~ayr~aa~~~~~~~~~~~~~~~~~g~l~~~~giG~~~a~~i~e~~ 69 (335)
T PRK07945 8 RRIAFLLERARADTYRVRAFRRAADVVEALDAAERARRARAGSLTSLPGIGPKTAKVIAQAL 69 (335)
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHhcChhHHHHHHhcCCcccCCCcCHHHHHHHHHHH
Confidence 45556666667655 999999999988653222 2211 12 68999999999999987664
No 143
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
Probab=77.63 E-value=1.7 Score=40.09 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.3
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHh
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a 214 (498)
.+.++|..|||||++.|.+|..+-
T Consensus 94 As~eeL~~lpgIG~~kA~aIi~yR 117 (149)
T COG1555 94 ASAEELQALPGIGPKKAQAIIDYR 117 (149)
T ss_pred cCHHHHHHCCCCCHHHHHHHHHHH
Confidence 357899999999999999999875
No 144
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=77.45 E-value=4.4 Score=38.82 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=20.2
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHh
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a 214 (498)
.+.+.|.++||||+++|+.|+..-
T Consensus 105 ~d~~~L~~v~Gig~k~A~~I~~~l 128 (192)
T PRK00116 105 GDVKALTKVPGIGKKTAERIVLEL 128 (192)
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHH
Confidence 467889999999999999998653
No 145
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=77.27 E-value=1.8 Score=41.63 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=21.8
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
..++.|.+|||||+|+|.=+..+-+++
T Consensus 9 ~LI~~l~kLPGvG~KsA~R~AfhLL~~ 35 (198)
T COG0353 9 KLIDALKKLPGVGPKSAQRLAFHLLQR 35 (198)
T ss_pred HHHHHHhhCCCCChhHHHHHHHHHHcc
Confidence 456789999999999998777666654
No 146
>PRK13844 recombination protein RecR; Provisional
Probab=76.65 E-value=1.9 Score=41.63 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=22.6
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCCc
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~p 218 (498)
+..+.|.+|||||+|+|.=+..+-+..+
T Consensus 12 ~LI~~l~~LPGIG~KsA~Rla~~lL~~~ 39 (200)
T PRK13844 12 AVIESLRKLPTIGKKSSQRLALYLLDKS 39 (200)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 3467789999999999998887766554
No 147
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=76.38 E-value=1.9 Score=41.29 Aligned_cols=27 Identities=37% Similarity=0.416 Sum_probs=22.1
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
.+.+.|.++||||+|||.-|.+---++
T Consensus 105 ~D~~~L~~vpGIGkKtAerIilELkdK 131 (188)
T PRK14606 105 QDVEGLSKLPGISKKTAERIVMELKDE 131 (188)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999988654444
No 148
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=76.07 E-value=7.2 Score=40.67 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=39.6
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHHh-cCC
Q 010868 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIA-FKE 217 (498)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~a-~~~ 217 (498)
++.+++.-.|=.. |+++..++|..|..-...+ ++.++|.+|||||+.+|+-|--+. -|.
T Consensus 12 ~la~l~el~gen~~k~~ay~~Aa~~i~~l~~~i-~~~~~l~~lpgIG~~ia~kI~Eil~tG~ 72 (334)
T smart00483 12 ILAENYEVFGENKRKCSYFRKAASVLKSLPFPI-NSMKDLKGLPGIGDKIKKKIEEIIETGK 72 (334)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhCCCCC-CCHHHHhcCCCccHHHHHHHHHHHHhCc
Confidence 3344444455433 7888888888776643333 356789999999999999987553 444
No 149
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=75.95 E-value=3.8 Score=42.28 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=44.0
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhh--hhcCCCCcHHHHHHHHHHh
Q 010868 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSD--LRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~--L~~LpGIG~~TA~~il~~a 214 (498)
+++...+.-.|=.. |++.-+.+|+.|-..+-++|+..+. +++|||||+.+|+.|.-|.
T Consensus 13 e~iA~~me~~Gen~fk~~aYr~Aa~sle~~~e~~~ei~e~~~~t~l~gIGk~ia~~I~e~l 73 (326)
T COG1796 13 ERIADYMELEGENPFKIRAYRKAAQSLENLTEDLEEIEERGRLTELPGIGKGIAEKISEYL 73 (326)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHhhhhcccchHHHHhhcccCCCCCccHHHHHHHHHHH
Confidence 44555555566654 8888888888887666667766665 8999999999999998764
No 150
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=75.76 E-value=2.1 Score=41.57 Aligned_cols=27 Identities=33% Similarity=0.321 Sum_probs=21.9
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
.+.+.|.++||||+|||+-|..---++
T Consensus 106 ~D~~~L~~ipGIGkKtAerIilELkdK 132 (203)
T PRK14602 106 EDVAALTRVSGIGKKTAQHIFLELKYK 132 (203)
T ss_pred CCHHHHhcCCCcCHHHHHHHHHHHHHh
Confidence 468899999999999999888554443
No 151
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=75.63 E-value=2.1 Score=41.38 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=22.0
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
.+.+.|.++||||+|||+-|..---++
T Consensus 104 ~D~~~L~kvpGIGkKtAerIilELkdK 130 (197)
T PRK14603 104 GDARLLTSASGVGKKLAERIALELKGK 130 (197)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999988654443
No 152
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=75.51 E-value=2 Score=41.62 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=22.3
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
.+.+.|.++||||+|||+-+++---|+
T Consensus 105 ~d~~~L~k~PGIGkKtAerivleLk~K 131 (201)
T COG0632 105 EDVKALSKIPGIGKKTAERIVLELKGK 131 (201)
T ss_pred cChHhhhcCCCCCHHHHHHHHHHHhhh
Confidence 467889999999999999888765444
No 153
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.35 E-value=3.1 Score=40.83 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=44.3
Q ss_pred hCCHHHHHHHHhccCcHHHHH-HHHHHHHHHHHcC---CCCC----CchhhhhcCCCCcHHHHHHHHH-HhcCC
Q 010868 153 KASLEEVNEMWAGLGYYRRAR-FLLEGAKMIVAEG---DGFP----NTVSDLRKVPGIGNYTAGAIAS-IAFKE 217 (498)
Q Consensus 153 ~a~~eel~~~i~~lG~~~RA~-~L~~~a~~i~~~~---g~~p----~~~~~L~~LpGIG~~TA~~il~-~a~~~ 217 (498)
..+..||.+++=+.|. +-+ ...++|+.+.++. |.+. .+.++|.+++|||+..|..+++ +.+++
T Consensus 13 ~Lsd~ELLailL~~g~--~~~~~~~~lA~~ll~~f~~~g~l~~l~~a~~~eL~~i~GiG~aka~~l~a~~El~r 84 (218)
T TIGR00608 13 ALSDYELLAIILRTGT--PKGLDVLSLSKRLLDVFGRQDSLGHLLSAPPEELSSVPGIGEAKAIQLKAAVELAK 84 (218)
T ss_pred cCCHHHHHHHHHhCCC--CCCCCHHHHHHHHHHHhcccCCHHHHHhCCHHHHHhCcCCcHHHHHHHHHHHHHHH
Confidence 3456788887755555 445 7788899998874 6543 5789999999999977766653 34443
No 154
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=75.24 E-value=2.3 Score=37.67 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.6
Q ss_pred chhhhhcCCCCcHHHHHHHHHHh
Q 010868 192 TVSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~~a 214 (498)
+.++|.+|||||+++|..|+.+-
T Consensus 66 ~~~eL~~lpGIG~~~A~~Ii~~R 88 (120)
T TIGR01259 66 SLEELQALPGIGPAKAKAIIEYR 88 (120)
T ss_pred CHHHHhcCCCCCHHHHHHHHHHH
Confidence 56899999999999999999874
No 155
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=74.98 E-value=2.2 Score=41.14 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=22.1
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
.+.+.|.++||||+|||+-|..---++
T Consensus 105 ~D~~~L~kvpGIGkKtAerIilELk~K 131 (195)
T PRK14604 105 GDVARLARVPGIGKKTAERIVLELKGK 131 (195)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999888654444
No 156
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=74.66 E-value=4.2 Score=39.01 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=25.7
Q ss_pred hhhhcCCCCcHHHHHHHHHHhcCCc-cc--ccccchhhHHHhhhcc
Q 010868 194 SDLRKVPGIGNYTAGAIASIAFKEV-VP--VVDGNVIRVLARLKAI 236 (498)
Q Consensus 194 ~~L~~LpGIG~~TA~~il~~a~~~p-~~--~VD~~v~Rvl~Rl~~i 236 (498)
..|..+|||||+||..++. .||.. .. +.+....++ .++-++
T Consensus 73 ~~L~~i~GIGpk~A~~il~-~fg~~~l~~~i~~~d~~~L-~~v~Gi 116 (192)
T PRK00116 73 RLLISVSGVGPKLALAILS-GLSPEELVQAIANGDVKAL-TKVPGI 116 (192)
T ss_pred HHHhcCCCCCHHHHHHHHH-hCCHHHHHHHHHhCCHHHH-HhCCCC
Confidence 4568899999999999875 34432 22 455555554 344333
No 157
>PRK00024 hypothetical protein; Reviewed
Probab=73.92 E-value=3.7 Score=40.44 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=41.4
Q ss_pred hCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCC----CCchhhhhcCCCCcHHHHHHHHH
Q 010868 153 KASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGF----PNTVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 153 ~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~----p~~~~~L~~LpGIG~~TA~~il~ 212 (498)
..+..||.+++=+.|. +-+....+|+.+.++.|.+ -.+.++|.+++|||+..|..++.
T Consensus 23 ~Lsd~ELLa~lL~~g~--~~~~~~~LA~~LL~~fgsL~~l~~as~~eL~~i~GIG~akA~~L~a 84 (224)
T PRK00024 23 ALSDAELLAILLRTGT--KGKSVLDLARELLQRFGSLRGLLDASLEELQSIKGIGPAKAAQLKA 84 (224)
T ss_pred cCCHHHHHHHHHcCCC--CCCCHHHHHHHHHHHcCCHHHHHhCCHHHHhhccCccHHHHHHHHH
Confidence 3455788887755555 4455667788888875543 34689999999999998876643
No 158
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=72.29 E-value=9 Score=39.48 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHH
Q 010868 171 RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 171 RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~ 212 (498)
|++....+|..|..-.-.+ .+.+++.+|||||+.+|+.|--
T Consensus 23 r~~aY~~Aa~~l~~l~~~i-~~~~~~~~ipgiG~~ia~kI~E 63 (307)
T cd00141 23 RVRAYRKAARALESLPEPI-ESLEEAKKLPGIGKKIAEKIEE 63 (307)
T ss_pred hHHHHHHHHHHHHhCCccc-CCHHHhcCCCCccHHHHHHHHH
Confidence 4444444444444321111 2233445555555555555543
No 159
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=71.95 E-value=5 Score=38.64 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=10.8
Q ss_pred chhhhhcCCCCcHHHHHHHHH
Q 010868 192 TVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~ 212 (498)
+.+.|.++||||+|||.-|.+
T Consensus 106 D~~~L~~vpGIGkKtAerIil 126 (194)
T PRK14605 106 NAELLSTIPGIGKKTASRIVL 126 (194)
T ss_pred CHHHHHhCCCCCHHHHHHHHH
Confidence 444555555555555555443
No 160
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=71.93 E-value=2.7 Score=40.29 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=20.6
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
.+.+.| ++||||+|||+-|++---++
T Consensus 105 ~D~~~L-~vpGIGkKtAerIilELk~K 130 (186)
T PRK14600 105 EDKAAL-KVNGIGEKLINRIITELQYK 130 (186)
T ss_pred CCHhhe-ECCCCcHHHHHHHHHHHHHH
Confidence 356888 99999999999988654443
No 161
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=71.53 E-value=8.7 Score=30.02 Aligned_cols=52 Identities=33% Similarity=0.503 Sum_probs=30.9
Q ss_pred HHhCCHHHHHHHHhcc-CcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 010868 151 LAKASLEEVNEMWAGL-GYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 151 La~a~~eel~~~i~~l-G~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il 211 (498)
|..|+.+||. .+ |+.. .|+.|++.=+. .|.+ .+.++|..++|||+.+.+-+.
T Consensus 8 iN~as~~eL~----~lpgi~~~~A~~Iv~~R~~----~G~f-~s~~dL~~v~gi~~~~~~~l~ 61 (65)
T PF12836_consen 8 INTASAEELQ----ALPGIGPKQAKAIVEYREK----NGPF-KSLEDLKEVPGIGPKTYEKLK 61 (65)
T ss_dssp TTTS-HHHHH----TSTT--HHHHHHHHHHHHH----H-S--SSGGGGGGSTT--HHHHHHHC
T ss_pred CccCCHHHHH----HcCCCCHHHHHHHHHHHHh----CcCC-CCHHHHhhCCCCCHHHHHHHH
Confidence 4467777763 34 6655 67777654332 3443 578999999999999988664
No 162
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=71.38 E-value=23 Score=33.93 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHhhhccHHHHHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHH
Q 010868 115 RAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW--PTIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVA 184 (498)
Q Consensus 115 dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~f--Pt~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~ 184 (498)
.-|+.|+=++.-.=.++.++..-.+.|.+.| .+|+.+|..+.++++.++.-.|.-+ |.+..+.-|+.+.+
T Consensus 31 ~LFE~l~Le~fQAGLSW~tVL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~NA~~~l~ 105 (188)
T COG2818 31 RLFELLCLEGFQAGLSWLTVLKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINNARAVLE 105 (188)
T ss_pred HHHHHHHHHHHhccchHHHHHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHH
Confidence 4688888888777789999999999998887 4999999999999999999999976 55667777777665
No 163
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=70.91 E-value=3.1 Score=40.07 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=5.8
Q ss_pred hhhcCCCCcHHHH
Q 010868 195 DLRKVPGIGNYTA 207 (498)
Q Consensus 195 ~L~~LpGIG~~TA 207 (498)
.|++++||||++|
T Consensus 74 ~Li~V~GIGpK~A 86 (194)
T PRK14605 74 TLIDVSGIGPKLG 86 (194)
T ss_pred HHhCCCCCCHHHH
Confidence 3444444444444
No 164
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=70.31 E-value=3 Score=28.17 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=12.8
Q ss_pred hhhcCCCCcHHHHHHHH
Q 010868 195 DLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 195 ~L~~LpGIG~~TA~~il 211 (498)
.+.+++|||++|+.-+-
T Consensus 12 pi~~~~GIG~kt~~kL~ 28 (32)
T PF11798_consen 12 PIRKFWGIGKKTAKKLN 28 (32)
T ss_dssp BGGGSTTS-HHHHHHHH
T ss_pred CHHhhCCccHHHHHHHH
Confidence 36789999999998643
No 165
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=69.82 E-value=3.4 Score=39.66 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=20.6
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhc
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAF 215 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~ 215 (498)
++...|.++||||+|||+-|++--.
T Consensus 104 ~d~~~L~~ipGiGkKtAerIileLk 128 (191)
T TIGR00084 104 EEVKALVKIPGVGKKTAERLLLELK 128 (191)
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4677899999999999999984433
No 166
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
Probab=69.10 E-value=5.8 Score=36.62 Aligned_cols=55 Identities=33% Similarity=0.490 Sum_probs=37.5
Q ss_pred HHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 010868 150 HLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 150 ~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il 211 (498)
.|-.|+.+|| ..+-++|-. +|+.|++- .+.+|.+ .+.++|.+.+|||++|.+-..
T Consensus 90 NiNtAs~eeL-~~lpgIG~~-kA~aIi~y----Re~~G~f-~sv~dL~~v~GiG~~~~ekl~ 144 (149)
T COG1555 90 NINTASAEEL-QALPGIGPK-KAQAIIDY----REENGPF-KSVDDLAKVKGIGPKTLEKLK 144 (149)
T ss_pred cccccCHHHH-HHCCCCCHH-HHHHHHHH----HHHcCCC-CcHHHHHhccCCCHHHHHHHH
Confidence 3667888998 666777762 44444331 1225633 689999999999999987554
No 167
>PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. It is often found with the transposase IS111A/IS1328/IS1533 family (see IPR002525 from INTERPRO) [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=68.31 E-value=4.4 Score=33.57 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.4
Q ss_pred hhhhcCCCCcHHHHHHHHHHhcC
Q 010868 194 SDLRKVPGIGNYTAGAIASIAFK 216 (498)
Q Consensus 194 ~~L~~LpGIG~~TA~~il~~a~~ 216 (498)
+-|+++||||+-||..++...-+
T Consensus 2 ~~l~sipGig~~~a~~llaeigd 24 (87)
T PF02371_consen 2 ELLTSIPGIGPITAATLLAEIGD 24 (87)
T ss_pred chhcCCCCccHHHHHHHHHHHcC
Confidence 45889999999999999987733
No 168
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=65.85 E-value=11 Score=28.85 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=29.7
Q ss_pred HHHHHh-CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHH
Q 010868 139 NRWMTK-WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAK 180 (498)
Q Consensus 139 ~~l~~~-fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~ 180 (498)
.+|.+. |.|+++|+.++.++|.++ -|+.. +|+.|++.++
T Consensus 19 ~~L~~~G~~t~~~l~~a~~~~L~~i---~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 19 EKLYEAGIKTLEDLANADPEELAEI---PGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHHHTTCSSHHHHHTSHHHHHHTS---TTSSHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHcCCHHHHhcC---CCCCHHHHHHHHHHHh
Confidence 455666 899999999999998663 45555 7888887765
No 169
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=64.83 E-value=25 Score=36.21 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCCCchhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 188 GFPNTVSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 188 ~~p~~~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
+.|....+|+++|||||+||..+- .+|.
T Consensus 79 ~~~~~l~~l~~i~GiGpk~a~~l~--~lGi 106 (307)
T cd00141 79 DVPPGLLLLLRVPGVGPKTARKLY--ELGI 106 (307)
T ss_pred cchHHHHHHHcCCCCCHHHHHHHH--HcCC
Confidence 478888999999999999998877 4554
No 170
>PRK00024 hypothetical protein; Reviewed
Probab=64.68 E-value=16 Score=35.98 Aligned_cols=65 Identities=25% Similarity=0.365 Sum_probs=46.3
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHH
Q 010868 119 VWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR--RARFLLEGAKMIVA 184 (498)
Q Consensus 119 ~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~--RA~~L~~~a~~i~~ 184 (498)
-|++.+|..=+....|.+.-.++++.|.+...+.+++.+++.+ ++|+|-.. .-..+.++++.+.+
T Consensus 28 ELLa~lL~~g~~~~~~~~LA~~LL~~fgsL~~l~~as~~eL~~-i~GIG~akA~~L~a~~El~~R~~~ 94 (224)
T PRK00024 28 ELLAILLRTGTKGKSVLDLARELLQRFGSLRGLLDASLEELQS-IKGIGPAKAAQLKAALELARRILA 94 (224)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHcCCHHHHHhCCHHHHhh-ccCccHHHHHHHHHHHHHHHHHHh
Confidence 3556666655666677778888999999999999999999876 47777543 33445555555544
No 171
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=63.71 E-value=5.1 Score=36.12 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.6
Q ss_pred CchhhhhcCCCCcHHHHHHHHH
Q 010868 191 NTVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~ 212 (498)
.+.++|.+||||||..|..|..
T Consensus 58 A~~~el~~lpGigP~~A~~IV~ 79 (132)
T PRK02515 58 SSVRAFRQFPGMYPTLAGKIVK 79 (132)
T ss_pred cCHHHHHHCCCCCHHHHHHHHH
Confidence 3578899999999999999994
No 172
>PRK14973 DNA topoisomerase I; Provisional
Probab=63.57 E-value=21 Score=42.48 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=59.0
Q ss_pred hCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHH-HHHHc-C-----CCCCCchhhhhcCCCCcHHHHHHHHHHhc
Q 010868 144 KWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAK-MIVAE-G-----DGFPNTVSDLRKVPGIGNYTAGAIASIAF 215 (498)
Q Consensus 144 ~fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~-~i~~~-~-----g~~p~~~~~L~~LpGIG~~TA~~il~~a~ 215 (498)
-|-++++++.|++++|... -|+.- .+..+...|. .++.. . ..+...+.+|++++|||+.|++-.-.-+.
T Consensus 822 G~~~~~d~~~a~p~~La~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~vkg~ge~t~~~l~~ag~ 898 (936)
T PRK14973 822 GFDTPEDFCSVHPAYLALK---TGISPETICRHAKLVCEKLGRPVPEKISKAAFERGRAELLSVPGLGETTLEKLYLAGV 898 (936)
T ss_pred cCCCHHHHHhcCHHHHhcC---CCCChhhHHHHHHHHHHHhcCCCchhhhhhhhcccchhhhhccCCCHHHHHHHHHcCC
Confidence 3889999999999998553 78876 7777755555 44432 1 12334556799999999999977666565
Q ss_pred CCcccccccchhhHHHhhh
Q 010868 216 KEVVPVVDGNVIRVLARLK 234 (498)
Q Consensus 216 ~~p~~~VD~~v~Rvl~Rl~ 234 (498)
-.+.-++-..+.++..+-|
T Consensus 899 ~~~e~l~~~d~~~la~~~~ 917 (936)
T PRK14973 899 YDGDLLVSADPKKLAKVTG 917 (936)
T ss_pred CCHHHhccCCHHHHhhhcC
Confidence 5542222226667666654
No 173
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=62.50 E-value=5.3 Score=38.34 Aligned_cols=21 Identities=43% Similarity=0.395 Sum_probs=18.1
Q ss_pred hhhhhcCCCCcHHHHHHHHHH
Q 010868 193 VSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~ 213 (498)
...|++++||||++|-+||..
T Consensus 71 F~~L~~V~GIGpK~Al~iL~~ 91 (191)
T TIGR00084 71 FKELIKVNGVGPKLALAILSN 91 (191)
T ss_pred HHHHhCCCCCCHHHHHHHHhc
Confidence 467999999999999999763
No 174
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs.
Probab=62.08 E-value=5.7 Score=27.65 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=13.8
Q ss_pred hhcCCCCcHHHHHHHHH
Q 010868 196 LRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 196 L~~LpGIG~~TA~~il~ 212 (498)
+-.+||||++||--++.
T Consensus 18 i~Gv~giG~ktA~~ll~ 34 (36)
T smart00279 18 IPGVKGIGPKTALKLLR 34 (36)
T ss_pred CCCCCcccHHHHHHHHH
Confidence 35789999999987763
No 175
>PRK08609 hypothetical protein; Provisional
Probab=62.01 E-value=24 Score=39.64 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.4
Q ss_pred CCCCchhhhhcCCCCcHHHHHHHH
Q 010868 188 GFPNTVSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 188 ~~p~~~~~L~~LpGIG~~TA~~il 211 (498)
++|....+|+++|||||+||..+-
T Consensus 82 ~~p~~~~~l~~i~GiGpk~a~~l~ 105 (570)
T PRK08609 82 EVPEGLLPLLKLPGLGGKKIAKLY 105 (570)
T ss_pred hCcHHHHHHhcCCCCCHHHHHHHH
Confidence 578888899999999999997654
No 176
>PRK08609 hypothetical protein; Provisional
Probab=61.82 E-value=12 Score=41.87 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=41.2
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHHh-cCC
Q 010868 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIA-FKE 217 (498)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~a-~~~ 217 (498)
+++..++.-.|=.. |++.-.++|+.|.....++. +..+|.+|||||+.+|+.|--+. -|.
T Consensus 11 ~~~A~~le~~g~n~fr~~aYr~Aa~~i~~l~~~i~-~~~~l~~ipgIG~~ia~kI~Eil~tG~ 72 (570)
T PRK08609 11 ETIATYMELKGENPFKISAFRKAAQALELDERSLS-EIDDFTKLKGIGKGTAEVIQEYRETGE 72 (570)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhCchhhh-hhhhhccCCCcCHHHHHHHHHHHHhCC
Confidence 34445555555333 88888888988876533333 44689999999999999987653 454
No 177
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg). All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily.
Probab=61.09 E-value=28 Score=35.95 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=38.8
Q ss_pred hhcccccccccccCCCCCcccccccccccchhhhhhhhhhhhcccccccCCCCcchhhhhhcCHHHHHHHHHHHHHHHhh
Q 010868 14 LSSLELRTSLTSSSRSTPFEQNSSFWSLTMDNERKTKKKKERQLPEKKTALPLEEEDIEDLFSEKEVKKIRQSLLQWYDK 93 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~wy~~ 93 (498)
|..+-.++.+.|+.+++|||-+.+||+.. ++++ ..+..+..+|..-|+.
T Consensus 102 l~~~~~~~~GlRi~~~d~fE~lv~~IlsQ------------------q~si-------------~~a~~~~~rL~~~~G~ 150 (310)
T TIGR00588 102 FQYVAQKFQGVRLLRQDPFECLISFICSS------------------NNNI-------------ARITRMVERLCQAFGP 150 (310)
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHhC------------------CCCH-------------HHHHHHHHHHHHHhCC
Confidence 44566788999999999999999999988 5444 4566788888888874
No 178
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.85 E-value=21 Score=35.04 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=45.6
Q ss_pred HHHHHHhhhccHH-HHHHHHHHHHHhC---CCHHHHHhCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHH
Q 010868 120 WVSEVMLQQTRVQ-TVIDYYNRWMTKW---PTIHHLAKASLEEVNEMWAGLGYYR--RARFLLEGAKMIVA 184 (498)
Q Consensus 120 lVs~Il~QqT~~~-~v~~~~~~l~~~f---Pt~~~La~a~~eel~~~i~~lG~~~--RA~~L~~~a~~i~~ 184 (498)
|++.+|..=+... .|.+.-++++++| ++...|.+++.+||.+ ++|+|-.. .-..+.++++.+..
T Consensus 19 LLailL~~g~~~~~~~~~lA~~ll~~f~~~g~l~~l~~a~~~eL~~-i~GiG~aka~~l~a~~El~rR~~~ 88 (218)
T TIGR00608 19 LLAIILRTGTPKGLDVLSLSKRLLDVFGRQDSLGHLLSAPPEELSS-VPGIGEAKAIQLKAAVELAKRYAK 88 (218)
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhcccCCHHHHHhCCHHHHHh-CcCCcHHHHHHHHHHHHHHHHHHh
Confidence 5566666556666 7788888899999 8999999999999876 47777644 33334555555544
No 179
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=59.61 E-value=13 Score=35.48 Aligned_cols=45 Identities=29% Similarity=0.266 Sum_probs=28.7
Q ss_pred hhhhhcCCCCcHHHHHHHHHH-hcCCcccccccchhhHHHhhhccc
Q 010868 193 VSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDGNVIRVLARLKAIS 237 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~-a~~~p~~~VD~~v~Rvl~Rl~~i~ 237 (498)
.+.|+++.||||++|=+||+- ..+.-.-+|..+=...+.++-++.
T Consensus 72 F~~Li~VsGIGpK~Al~ILs~~~~~el~~aI~~~D~~~L~~vpGIG 117 (183)
T PRK14601 72 FEMLLKVNGIGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIG 117 (183)
T ss_pred HHHHhccCCccHHHHHHHHcCCCHHHHHHHHHhCCHHHHhhCCCCC
Confidence 467999999999999999974 333322233333344555665554
No 180
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. This entry represents the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1KDH_A 1KEJ_A 1JMS_A 2IHM_A 3OGU_A 1MQ2_A 2P66_A 7ICI_A 1ZQN_A 1ZQK_A ....
Probab=58.66 E-value=8 Score=29.22 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=16.2
Q ss_pred hhhhcCCCCcHHHHHHHHHHhcC
Q 010868 194 SDLRKVPGIGNYTAGAIASIAFK 216 (498)
Q Consensus 194 ~~L~~LpGIG~~TA~~il~~a~~ 216 (498)
+.+..+.|||+.||.-....++.
T Consensus 2 ~~f~~I~GVG~~tA~~w~~~G~r 24 (52)
T PF10391_consen 2 KLFTGIWGVGPKTARKWYAKGIR 24 (52)
T ss_dssp HHHHTSTT--HHHHHHHHHTT--
T ss_pred cchhhcccccHHHHHHHHHhCCC
Confidence 56789999999999988876654
No 181
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=58.22 E-value=8.8 Score=30.20 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.6
Q ss_pred chhhhhc-CCCCcHHHHHHHHHH
Q 010868 192 TVSDLRK-VPGIGNYTAGAIASI 213 (498)
Q Consensus 192 ~~~~L~~-LpGIG~~TA~~il~~ 213 (498)
..++|.. +||||+.+|..|+.+
T Consensus 14 ~~~~L~~~ipgig~~~a~~Il~~ 36 (69)
T TIGR00426 14 TAEELQRAMNGVGLKKAEAIVSY 36 (69)
T ss_pred CHHHHHhHCCCCCHHHHHHHHHH
Confidence 4578999 999999999999987
No 182
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=58.07 E-value=16 Score=35.44 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=28.8
Q ss_pred hhhhhcCCCCcHHHHHHHHHH-hcCCcccccccchhhHHHhhhccc
Q 010868 193 VSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDGNVIRVLARLKAIS 237 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~-a~~~p~~~VD~~v~Rvl~Rl~~i~ 237 (498)
...|+++.||||++|=.||+. ..+.-.-+|-..=...+.++-++.
T Consensus 73 F~~Li~V~GIGpK~Al~iLs~~~~~~l~~aI~~~D~~~L~~ipGIG 118 (203)
T PRK14602 73 FIVLISISKVGAKTALAILSQFRPDDLRRLVAEEDVAALTRVSGIG 118 (203)
T ss_pred HHHHhCCCCcCHHHHHHHHhhCCHHHHHHHHHhCCHHHHhcCCCcC
Confidence 356899999999999999984 443322233333344455665553
No 183
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=57.30 E-value=14 Score=35.42 Aligned_cols=45 Identities=29% Similarity=0.312 Sum_probs=28.3
Q ss_pred hhhhhcCCCCcHHHHHHHHHH-hcCCcccccccchhhHHHhhhccc
Q 010868 193 VSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDGNVIRVLARLKAIS 237 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~-a~~~p~~~VD~~v~Rvl~Rl~~i~ 237 (498)
...|+++.||||++|=+||+- ..+.-.-++...=...+.++-++.
T Consensus 72 F~~Li~V~GIGpK~AL~iLs~~~~~el~~aI~~~D~~~L~~vpGIG 117 (188)
T PRK14606 72 FLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGIS 117 (188)
T ss_pred HHHHhccCCccHHHHHHHHcCCCHHHHHHHHHhCCHHHHhhCCCCC
Confidence 356999999999999999964 333322233333344455555553
No 184
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=56.77 E-value=12 Score=35.74 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=28.4
Q ss_pred hhhhhcCCCCcHHHHHHHHHH-hcCC-cccccccchhhHHHhhhccc
Q 010868 193 VSDLRKVPGIGNYTAGAIASI-AFKE-VVPVVDGNVIRVLARLKAIS 237 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~-a~~~-p~~~VD~~v~Rvl~Rl~~i~ 237 (498)
.+.|+++.||||++|=+||+- ..+. -.++.-..+.++ ++-++.
T Consensus 72 F~~LisV~GIGpK~Al~iLs~~~~~~l~~aI~~~D~~~L--~vpGIG 116 (186)
T PRK14600 72 LRMLVKVSGVNYKTAMSILSKLTPEQLFSAIVNEDKAAL--KVNGIG 116 (186)
T ss_pred HHHHhCcCCcCHHHHHHHHccCCHHHHHHHHHcCCHhhe--ECCCCc
Confidence 356899999999999999983 4443 233444444444 565553
No 185
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=56.74 E-value=27 Score=34.46 Aligned_cols=67 Identities=24% Similarity=0.397 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHc
Q 010868 118 GVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR--RARFLLEGAKMIVAE 185 (498)
Q Consensus 118 ~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~--RA~~L~~~a~~i~~~ 185 (498)
.-|++.+|--=|.-..|.+.-.++++.|.+...|..|+.+++..+ +|+|... -.+.+.++++.+...
T Consensus 27 ~ELLailLrtG~~~~~~~~la~~lL~~fg~L~~l~~a~~~el~~v-~GiG~aka~~l~a~~El~~R~~~~ 95 (224)
T COG2003 27 AELLAILLRTGTKGESVLDLAKELLQEFGSLAELLKASVEELSSV-KGIGLAKAIQIKAAIELGKRILAE 95 (224)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcccHHHHHhCCHHHHhhC-CCccHHHHHHHHHHHHHHHHHHHH
Confidence 346677777778888888999999999999999999999998654 8888765 567777778777764
No 186
>PRK13482 DNA integrity scanning protein DisA; Provisional
Probab=56.61 E-value=24 Score=37.12 Aligned_cols=48 Identities=25% Similarity=0.455 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Q 010868 136 DYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE 185 (498)
Q Consensus 136 ~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~ 185 (498)
+.-.++.+.|.+...+.+|+.++|.++ .|+| ..||+.|.+.++.+.+.
T Consensus 298 ~iAk~Ll~~FGSL~~Il~As~eeL~~V-eGIG-e~rA~~I~e~l~Rl~e~ 345 (352)
T PRK13482 298 AVIENLVEHFGSLQGLLAASIEDLDEV-EGIG-EVRARAIREGLSRLAEQ 345 (352)
T ss_pred HHHHHHHHHcCCHHHHHcCCHHHHhhC-CCcC-HHHHHHHHHHHHHHHHH
Confidence 344567788889999999998887554 5666 23777788888877654
No 187
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.40 E-value=42 Score=27.54 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHhCCHHHHHHHHhccCcHHH---HHHHHHHHHHHHHc
Q 010868 132 QTVIDYYNRWMTKW-PTIHHLAKASLEEVNEMWAGLGYYRR---ARFLLEGAKMIVAE 185 (498)
Q Consensus 132 ~~v~~~~~~l~~~f-Pt~~~La~a~~eel~~~i~~lG~~~R---A~~L~~~a~~i~~~ 185 (498)
++-..||..|++.- .+.++|..+.++|+.+++.-+|+..| .++|+++.......
T Consensus 19 AnLl~Yyd~fi~~GgDDvqQL~~~~e~eF~eim~lvGM~sKPLHVrRlqKAL~ew~~~ 76 (82)
T PF04904_consen 19 ANLLQYYDTFIAQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWSTN 76 (82)
T ss_pred hhHHHHHHHHHHHcChhHHHHHhcChHHHHHHHHHhCccCccHHHHHHHHHHHHHhcC
Confidence 44567899988875 48999999999999999999999874 67777766655543
No 188
>KOG2841 consensus Structure-specific endonuclease ERCC1-XPF, ERCC1 component [Replication, recombination and repair]
Probab=55.33 E-value=16 Score=36.24 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=42.4
Q ss_pred cCChHHHHHHHHHhhhccHHHHHHH-HHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHH
Q 010868 113 EKRAYGVWVSEVMLQQTRVQTVIDY-YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKM 181 (498)
Q Consensus 113 ~~dp~~~lVs~Il~QqT~~~~v~~~-~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~ 181 (498)
..|+..-+++.+ |+...|.+. -..|...|+|.+++.+|+.+||+.+ -|+.. ||++|++...+
T Consensus 186 ~~d~ls~~~~~L----t~i~~VnKtda~~LL~~FgsLq~~~~AS~~ele~~---~G~G~~kak~l~~~l~~ 249 (254)
T KOG2841|consen 186 DRDLLSSLLGFL----TTIPGVNKTDAQLLLQKFGSLQQISNASEGELEQC---PGLGPAKAKRLHKFLHQ 249 (254)
T ss_pred cccHHHHHHHHH----HhCCCCCcccHHHHHHhcccHHHHHhcCHhHHHhC---cCcCHHHHHHHHHHHhc
Confidence 345554444443 444443332 2467788999999999999999776 56665 99999987654
No 189
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=54.61 E-value=17 Score=35.01 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=28.4
Q ss_pred hhhhhcCCCCcHHHHHHHHH-HhcCCcccccccchhhHHHhhhccc
Q 010868 193 VSDLRKVPGIGNYTAGAIAS-IAFKEVVPVVDGNVIRVLARLKAIS 237 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~-~a~~~p~~~VD~~v~Rvl~Rl~~i~ 237 (498)
...|+++.||||++|=+||+ +..+.-.-++..+=...+.++-++.
T Consensus 71 F~~L~~V~GIGpK~AL~iLs~~~~~~l~~aI~~~D~~~L~kvpGIG 116 (197)
T PRK14603 71 FELLLGVSGVGPKLALALLSALPPALLARALLEGDARLLTSASGVG 116 (197)
T ss_pred HHHHhCcCCcCHHHHHHHHcCCCHHHHHHHHHhCCHHHHhhCCCCC
Confidence 35699999999999999998 3444422233333334455555543
No 190
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=53.05 E-value=21 Score=35.15 Aligned_cols=56 Identities=27% Similarity=0.259 Sum_probs=41.5
Q ss_pred CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCC----CCCchhhhhcCCCCcHHHHHHHH
Q 010868 154 ASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDG----FPNTVSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 154 a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~----~p~~~~~L~~LpGIG~~TA~~il 211 (498)
.+..||..++=.-|- |-...+.+|+.++++.|. ...+.++|.+++|||+.-|--+.
T Consensus 24 Lsd~ELLailLrtG~--~~~~~~~la~~lL~~fg~L~~l~~a~~~el~~v~GiG~aka~~l~ 83 (224)
T COG2003 24 LSDAELLAILLRTGT--KGESVLDLAKELLQEFGSLAELLKASVEELSSVKGIGLAKAIQIK 83 (224)
T ss_pred cchHHHHHHHHhcCC--CCCCHHHHHHHHHHHcccHHHHHhCCHHHHhhCCCccHHHHHHHH
Confidence 344777777755565 566778899999998554 35678999999999987655443
No 191
>cd00080 HhH2_motif Helix-hairpin-helix class 2 (Pol1 family) motif. HhH2 domains are found in Rad2 family of prokaryotic and eukaryotic replication and repair nucleases, i.e., DNA polymerase I, Taq DNA polymerase, DNA repair protein Rad2 endonuclease, flap endonuclease, exonuclease I and IX, 5'-3' exonuclease and also bacteriophage Rnase H. These nucleases degrade RNA-DNA or DNA-DNA duplexes, or both and play essential roles in DNA duplication, repair, and recombination.
Probab=52.36 E-value=10 Score=30.70 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=15.5
Q ss_pred hhhcCCCCcHHHHHHHHHH
Q 010868 195 DLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 195 ~L~~LpGIG~~TA~~il~~ 213 (498)
.+-.+||||++||.-++.-
T Consensus 23 ~i~gv~giG~k~A~~ll~~ 41 (75)
T cd00080 23 NIPGVPGIGPKTALKLLKE 41 (75)
T ss_pred cCCCCCcccHHHHHHHHHH
Confidence 3457999999999988854
No 192
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=51.35 E-value=42 Score=32.21 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=28.6
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCC
Q 010868 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLD 393 (498)
Q Consensus 345 gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~ 393 (498)
-+||+-|.... .|-+|||++..+|++ .+.|.|.|.+-++..
T Consensus 58 PHvLLLq~~~~-----~fkLPGg~l~~gE~e---~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 58 PHVLLLQIGNT-----FFKLPGGRLRPGEDE---IEGLKRKLTEKLSPE 98 (188)
T ss_dssp EEEEEEEETTT-----EEE-SEEE--TT--H---HHHHHHHHHHHHB-S
T ss_pred cEEEEEeccCc-----cccCCccEeCCCCCh---hHHHHHHHHHHcCCC
Confidence 37888886443 799999999999877 789999999888765
No 193
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=51.16 E-value=38 Score=30.01 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=50.1
Q ss_pred CCCHHHHHhCCHHHHHH--HHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCccccc
Q 010868 145 WPTIHHLAKASLEEVNE--MWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVV 222 (498)
Q Consensus 145 fPt~~~La~a~~eel~~--~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~V 222 (498)
.-|.++|.+++.+.... +...+|... ++|.+.. .+.+|..+||||+..|..+..-++.-..-..
T Consensus 16 I~t~~~Ll~~~~~~~~r~~La~~~~i~~--~~l~~w~------------~~AdL~ri~gi~~~~a~LL~~AGv~Tv~~LA 81 (122)
T PF14229_consen 16 IKTTGDLLEAGDTPLGRKALAKKLGISE--RNLLKWV------------NQADLMRIPGIGPQYAELLEHAGVDTVEELA 81 (122)
T ss_pred CCcHHHHHHcCCCHHHHHHHHHhcCCCH--HHHHHHH------------hHHHhhhcCCCCHHHHHHHHHhCcCcHHHHH
Confidence 34777777777766654 445555532 2332222 2456788999999999988887776544445
Q ss_pred ccchhhHHHhhhcc
Q 010868 223 DGNVIRVLARLKAI 236 (498)
Q Consensus 223 D~~v~Rvl~Rl~~i 236 (498)
..+..++..++..+
T Consensus 82 ~~~p~~L~~~l~~~ 95 (122)
T PF14229_consen 82 QRNPQNLHQKLGRL 95 (122)
T ss_pred hCCHHHHHHHHHHH
Confidence 66677777766654
No 194
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=50.65 E-value=25 Score=39.55 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=48.9
Q ss_pred HHhhhccHHH---HHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCC
Q 010868 124 VMLQQTRVQT---VIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVP 200 (498)
Q Consensus 124 Il~QqT~~~~---v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~Lp 200 (498)
-++|+.++++ |+.+..++..+. ....+ -|.|+|--+|...|..+.. +.+ ---.+.++|.++|
T Consensus 488 ~lLq~iRDEaHRFAit~hRk~R~k~-------~s~L~----~I~GiG~kr~~~LL~~Fgs-~~~---I~~As~eeL~~v~ 552 (574)
T PRK14670 488 RILQNVRDEAHRKANGFNKKLRENI-------KLNYT----KIKGIGEKKAKKILKSLGT-YKD---ILLLNEDEIAEKM 552 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-------ccccc----cCCCCCHHHHHHHHHHhCC-HHH---HHhCCHHHHHhCC
Confidence 4778888876 777787777761 12223 3578887554443332221 110 0125789999999
Q ss_pred CCcHHHHHHHHHHh
Q 010868 201 GIGNYTAGAIASIA 214 (498)
Q Consensus 201 GIG~~TA~~il~~a 214 (498)
|||.++|..|..+-
T Consensus 553 gi~~~~A~~I~~~l 566 (574)
T PRK14670 553 KINIKMAKKIKKFA 566 (574)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999997764
No 195
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=49.97 E-value=22 Score=34.30 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=29.2
Q ss_pred hhhhhcCCCCcHHHHHHHHHH-hcCCcccccccchhhHHHhhhccc
Q 010868 193 VSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDGNVIRVLARLKAIS 237 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~-a~~~p~~~VD~~v~Rvl~Rl~~i~ 237 (498)
...|+++.||||++|=+||+. ..+.-.-++..+=...+.++-++.
T Consensus 72 F~~Li~V~GIGpK~Al~iLs~~~~~el~~aI~~~D~~~L~kvpGIG 117 (195)
T PRK14604 72 FELLIGVSGVGPKAALNLLSSGTPDELQLAIAGGDVARLARVPGIG 117 (195)
T ss_pred HHHHhCcCCcCHHHHHHHHcCCCHHHHHHHHHhCCHHHHhhCCCCC
Confidence 466999999999999999984 333322334444444555665553
No 196
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=47.97 E-value=46 Score=38.10 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=32.2
Q ss_pred CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 010868 146 PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 146 Pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il 211 (498)
-++++|..+..++|..+ =||.. .|.+|++..+.-.+. .+..-+-. +.+||||+.+|..++
T Consensus 468 ~~i~DL~~L~~~~L~~l---~gfG~Ksa~~ll~~Ie~sk~~--~l~R~l~a-lgi~~IG~~~ak~L~ 528 (665)
T PRK07956 468 HDPADLFKLTAEDLLGL---EGFGEKSAQNLLDAIEKSKET--SLARFLYA-LGIRHVGEKAAKALA 528 (665)
T ss_pred CCHHHHHhcCHHHHhcC---cCcchHHHHHHHHHHHHhhcC--CHHHhhHh-hhccCcCHHHHHHHH
Confidence 48888888887775443 26655 577776655543221 11111111 256666666665444
No 197
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=47.40 E-value=12 Score=37.09 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=15.5
Q ss_pred hhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 194 SDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 194 ~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
+.|..|||||+.+|..++..+|+-
T Consensus 3 ~~L~~IpGIG~krakkLl~~GF~S 26 (232)
T PRK12766 3 EELEDISGVGPSKAEALREAGFES 26 (232)
T ss_pred cccccCCCcCHHHHHHHHHcCCCC
Confidence 356666777777777766666653
No 198
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=47.39 E-value=66 Score=36.78 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=36.9
Q ss_pred CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCC-CchhhhhcCCCCcHHHHHHHHH
Q 010868 146 PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFP-NTVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 146 Pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p-~~~~~L~~LpGIG~~TA~~il~ 212 (498)
-++.+|..+..++|.++ . ||.. .|.+|++..+.-.. .| ...-..+.|||||+.+|..++.
T Consensus 455 ~~~~Dl~~L~~~~L~~L-~--GfG~Ksa~nIl~~Ie~sk~----~~l~r~L~aLgIpgVG~~~ak~L~~ 516 (652)
T TIGR00575 455 RSVADLYALKKEDLLEL-E--GFGEKSAQNLLNAIEKSKE----KPLARLLFALGIRHVGEVTAKNLAK 516 (652)
T ss_pred CCHHHHHhcCHHHHhhc-c--CccHHHHHHHHHHHHHhcc----CcHHHHHhhccCCCcCHHHHHHHHH
Confidence 38888888888776543 2 5555 57777666553321 12 1123345788888888876654
No 199
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=46.66 E-value=59 Score=33.78 Aligned_cols=65 Identities=23% Similarity=0.335 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHcCCCCC-CchhhhhcCCCCcHHHHHHHHHHh-cCC-c---ccccc--cchhhHHHhhhccc
Q 010868 171 RARFLLEGAKMIVAEGDGFP-NTVSDLRKVPGIGNYTAGAIASIA-FKE-V---VPVVD--GNVIRVLARLKAIS 237 (498)
Q Consensus 171 RA~~L~~~a~~i~~~~g~~p-~~~~~L~~LpGIG~~TA~~il~~a-~~~-p---~~~VD--~~v~Rvl~Rl~~i~ 237 (498)
|++.-..+|..|..-. +| .+.+++.+|||||+++|..|--|. -|. + .+.-| .-+...+.+.+++.
T Consensus 34 r~~~y~~Aasvlk~~p--~~I~S~~ea~~lP~iG~kia~ki~EiletG~l~ele~v~~de~~~~lklFtnifGvG 106 (353)
T KOG2534|consen 34 RARAYRRAASVLKSLP--FPITSGEEAEKLPGIGPKIAEKIQEILETGVLRELEAVRNDERSQSLKLFTNIFGVG 106 (353)
T ss_pred HHHHHHHHHHHHHhCC--CCcccHHHhcCCCCCCHHHHHHHHHHHHcCCchhHHHHhcchhHHHHHHHHHHhccC
Confidence 7777777777776532 23 568999999999999999987664 443 2 22211 22345666777765
No 200
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=45.57 E-value=13 Score=38.81 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=24.9
Q ss_pred CCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCc
Q 010868 186 GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (498)
Q Consensus 186 ~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p 218 (498)
...+|....+|+++|||||+||..+-- +|..
T Consensus 81 ~~~~p~~l~~l~~i~GiGpk~a~~l~~--lGi~ 111 (334)
T smart00483 81 NDEVYKSLKLFTNVFGVGPKTAAKWYR--KGIR 111 (334)
T ss_pred cCcHHHHHHHHHccCCcCHHHHHHHHH--hCCC
Confidence 446788899999999999999987755 5543
No 201
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=45.50 E-value=20 Score=40.64 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=32.8
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHH
Q 010868 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
-.+..+|-+||... -...-..+|+.+-.-..-.-.+.++|.+++|||..+|..|..|
T Consensus 505 ~~l~r~l~aLGIr~VG~~~Ak~La~~f~sl~~l~~a~~e~l~~i~giG~~vA~si~~f 562 (667)
T COG0272 505 QPLARFLYALGIRHVGETTAKSLARHFGTLEALLAASEEELASIPGIGEVVARSIIEF 562 (667)
T ss_pred CCHHHHHHHcCCchhhHHHHHHHHHHhhhHHHHHhcCHHHHhhccchhHHHHHHHHHH
Confidence 34445566777754 3333333333222100012346788999999999999988765
No 202
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=44.97 E-value=32 Score=39.36 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=18.9
Q ss_pred chhhhhcCCCCcHHHHHHHHHHh
Q 010868 192 TVSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~~a 214 (498)
+.++|++++|||+.+|..|..|-
T Consensus 539 ~~e~l~~i~giG~~~a~si~~ff 561 (669)
T PRK14350 539 ALSKLLKIKGIGEKIALNIIEAF 561 (669)
T ss_pred CHHHHhhCCCccHHHHHHHHHHH
Confidence 56788888899998888888773
No 203
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=44.00 E-value=47 Score=21.03 Aligned_cols=28 Identities=14% Similarity=0.490 Sum_probs=23.0
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHhCCC
Q 010868 120 WVSEVMLQQTRVQTVIDYYNRWMTKWPT 147 (498)
Q Consensus 120 lVs~Il~QqT~~~~v~~~~~~l~~~fPt 147 (498)
.++.+..++...+.+..++.++++.||+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666677888999999999999995
No 204
>COG1415 Uncharacterized conserved protein [Function unknown]
Probab=43.63 E-value=18 Score=37.84 Aligned_cols=68 Identities=25% Similarity=0.327 Sum_probs=41.4
Q ss_pred CCCchhhhhcCCCCcHHHHHHHHHHh---cCCcccccccchhhHHHhhhcccCCCCC--hHHHHHHHHHHHhhcC
Q 010868 189 FPNTVSDLRKVPGIGNYTAGAIASIA---FKEVVPVVDGNVIRVLARLKAISANPKD--TSTVKNFWKLATQLVD 258 (498)
Q Consensus 189 ~p~~~~~L~~LpGIG~~TA~~il~~a---~~~p~~~VD~~v~Rvl~Rl~~i~~~~~~--~~~~~~l~~~~~~l~~ 258 (498)
-|++.++|+-.||||+.|+.+..+.| ||.|.--=|-- +...-+|+-+..|.. ..+..++..+++.++.
T Consensus 273 ~p~Df~elLl~~GiGpstvRALalVAEvIyg~~~s~rDP~--~yafA~GGKDgvP~pV~~~~yde~I~~l~~~ve 345 (373)
T COG1415 273 NPDDFEELLLVPGIGPSTVRALALVAEVIYGEPPSFRDPV--KYAFAVGGKDGVPFPVNRKTYDELIEFLEELVE 345 (373)
T ss_pred CcccHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCcCCch--hhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 37899999999999999999887776 77653222221 155556665543321 2223344445555544
No 205
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=43.09 E-value=16 Score=35.29 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=28.0
Q ss_pred hhhhhcCCCCcHHHHHHHHHH-hcCCcccccccchhhHHHhhhccc
Q 010868 193 VSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDGNVIRVLARLKAIS 237 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~-a~~~p~~~VD~~v~Rvl~Rl~~i~ 237 (498)
.+.|+++.||||++|=+||+- ..+.-.-+|..+=...+.++-++.
T Consensus 71 F~~LisVsGIGPK~ALaILs~~~~~el~~aI~~~D~~~L~~vpGIG 116 (196)
T PRK13901 71 FEELIGVDGIGPRAALRVLSGIKYNEFRDAIDREDIELISKVKGIG 116 (196)
T ss_pred HHHHhCcCCcCHHHHHHHHcCCCHHHHHHHHHhCCHHHHhhCCCCC
Confidence 467999999999999999963 233222233333344455555543
No 206
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=42.19 E-value=2.2 Score=44.83 Aligned_cols=161 Identities=41% Similarity=0.625 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHhcchhccCCCCC-------------C-CCCCCcccChhhhcCCCCCcccee-c------cccccccccc
Q 010868 261 RPGDFNQSLMELGAVICTPLNPN-------------C-TSCPVSDKCQAYSMSKRDNSVLVT-S------YPMKVLKARQ 319 (498)
Q Consensus 261 ~~~~~~~~l~~~G~~iC~~~~P~-------------C-~~CpL~~~C~~~~~~~~~~~~~~~-~------~p~k~~K~k~ 319 (498)
.-+.+++.+|.+.+..--|..|- | .+-|.-+.|+-....+--+...++ . ||.+..+.++
T Consensus 253 Skgk~~q~~wkLA~qLVDP~RPGDFNQalMELGAt~CTpq~P~CS~CPvss~CrA~q~~Eqn~~i~~g~t~~~dve~~~P 332 (555)
T KOG2457|consen 253 SKGKFFQSSWKLAAQLVDPSRPGDFNQALMELGATLCTPQKPSCSSCPVSSQCRAFQLSEQNRTISVGDTYPTDVEKAKP 332 (555)
T ss_pred chhhHHHHHHHHHHHhcCCCCCCcHHHHHHHhcCeeccCCCCCcCCCCcHHHHHHHhHhhhcceeecCCcCCccHhhcCC
Confidence 34789999999999988776663 3 244556677754433311111111 1 6777777788
Q ss_pred ceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCC-Cc
Q 010868 320 RHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRN-NC 398 (498)
Q Consensus 320 k~~~v~~~II~~~~~~~~~~~~~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~-~~ 398 (498)
++.+..+||..|.+. ...++.|.+-+-+||+. .+|.||||..-+-...++.+.+.++.-.+++.+|+-+.. .+
T Consensus 333 ~~~~C~vCv~~ips~----e~~Qs~gv~~~p~~p~~--~~~reE~~~v~~~e~~dp~t~~~~ilv~~rp~~gllagLw~f 406 (555)
T KOG2457|consen 333 RHDFCCVCVLEIPSL----ERNQSGGVFVLPKRPEQ--LAGREEFPSVILNEEADPATRRNAILVYLRPAFGLLAGLWKF 406 (555)
T ss_pred CCCceeEeecCCCCc----hhhccCcEEEeccChhh--cCcccccceeeeeccCCchhhcceeEEEeccchhHHHHhhhc
Confidence 889999998864332 12256688889999876 899999999988766666555554332233333332220 00
Q ss_pred ccccccccccEEEEcCCeEEEEEEEEEEE
Q 010868 399 SIILREDVGEFVHIFSHIRLKVHVELLVL 427 (498)
Q Consensus 399 ~~~~~~~l~~v~H~fsH~~l~l~~~~~~~ 427 (498)
-.++...+.++.|.|.|+.-.++.+...+
T Consensus 407 pti~~~e~se~~~~~a~~q~~v~~w~~~~ 435 (555)
T KOG2457|consen 407 PTIVSRELSEFVHIFAHIQRKVYVWLLVV 435 (555)
T ss_pred CceeccCcchHHHHHHHHHHHHHHHhccc
Confidence 01123356677888888875555554433
No 207
>PRK13482 DNA integrity scanning protein DisA; Provisional
Probab=41.35 E-value=24 Score=37.15 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCCCC----CchhhhhcCCCCcHHHHHHH
Q 010868 177 EGAKMIVAEGDGFP----NTVSDLRKVPGIGNYTAGAI 210 (498)
Q Consensus 177 ~~a~~i~~~~g~~p----~~~~~L~~LpGIG~~TA~~i 210 (498)
.+|+.++++.|.+. .+.++|.+++|||+..|..|
T Consensus 298 ~iAk~Ll~~FGSL~~Il~As~eeL~~VeGIGe~rA~~I 335 (352)
T PRK13482 298 AVIENLVEHFGSLQGLLAASIEDLDEVEGIGEVRARAI 335 (352)
T ss_pred HHHHHHHHHcCCHHHHHcCCHHHHhhCCCcCHHHHHHH
Confidence 45677777766543 46778888888888888764
No 208
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=40.71 E-value=1.6e+02 Score=30.77 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=39.4
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCC-HHHHHhCCHHHHHHH
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPT-IHHLAKASLEEVNEM 162 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt-~~~La~a~~eel~~~ 162 (498)
.=|.+-+++-.+.--.+.+.|..+|.+|.+.|.| .+.|.+|+.|+|..+
T Consensus 303 liPLaeIi~~~~g~gi~tK~V~~~we~lv~~FGtEi~vLi~a~~e~La~V 352 (403)
T COG1379 303 LIPLAEIISMALGKGITTKAVKRTWERLVRAFGTEIDVLIDAPIEELARV 352 (403)
T ss_pred cccHHHHHHHHhccceechhHHHHHHHHHHHhcchhhhHhcCCHHHHhhh
Confidence 3466666666666667889999999999999985 888999999997544
No 209
>KOG3835 consensus Transcriptional corepressor NAB1 [Transcription]
Probab=39.86 E-value=69 Score=33.96 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhC-CCHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHHcCC
Q 010868 131 VQTVIDYYNRWMTKW-PTIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVAEGD 187 (498)
Q Consensus 131 ~~~v~~~~~~l~~~f-Pt~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~~~g 187 (498)
-++-..||+.|++.- .++.+|.++.++|+.+++.-+|+-. -.|+|+++.+....+.|
T Consensus 20 kANLlsYyd~FIqQGGDDvqQlceagEeEFLEIMaLVGMa~KPLHVRRlQkALrew~tnpg 80 (495)
T KOG3835|consen 20 KANLLSYYDVFIQQGGDDVQQLCEAGEEEFLEIMALVGMAPKPLHVRRLQKALREWSTNPG 80 (495)
T ss_pred HhhHHHHHHHHHHhcchHHHHHHHhhHHHHHHHHHHhccCCcchhHHHHHHHHHHHhcCcc
Confidence 355678999999875 4899999999999999999999976 58888888887776533
No 210
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=38.22 E-value=1e+02 Score=34.59 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=43.3
Q ss_pred HHHHHh--CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHc----------------------CCCC----
Q 010868 139 NRWMTK--WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAE----------------------GDGF---- 189 (498)
Q Consensus 139 ~~l~~~--fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~----------------------~g~~---- 189 (498)
.+|++. .-++.+|-.+..++|.++ =||.. .|.+|++..+.-... .+.+
T Consensus 439 ~~L~~~G~i~~~~Diy~L~~~~l~~l---~gfgeks~~nll~aIe~sk~~~l~r~l~aLGI~~vG~~~ak~~~~~i~~l~ 515 (562)
T PRK08097 439 RALHQTGLFEHLFSWLALTPEQLANT---PGIGKARAEQLWHQFNLARQQPFSRWLKALGIPLPQAALNALDDRSWQQLL 515 (562)
T ss_pred HHHHHcCCcCCHHHHhcCCHHHHhcC---cCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCccHHHHHHHHhcCCHHHHH
Confidence 345443 357778877777665443 25555 566666554321110 0111
Q ss_pred CCchhhhhcCCCCcHHHHHHHHHHh
Q 010868 190 PNTVSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 190 p~~~~~L~~LpGIG~~TA~~il~~a 214 (498)
..+.++|.+++|||+.+|++|..|-
T Consensus 516 ~a~~e~l~~i~gIG~~~a~si~~~f 540 (562)
T PRK08097 516 SRSEQQWQQLPGIGEGRARQLIAFL 540 (562)
T ss_pred cCCHHHHhcCCCchHHHHHHHHHHH
Confidence 1345778899999999999888763
No 211
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=37.93 E-value=17 Score=41.11 Aligned_cols=23 Identities=43% Similarity=0.562 Sum_probs=20.1
Q ss_pred CchhhhhcCCCCcHHHHHHHHHH
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
.+.++|.++||||+++|..|..+
T Consensus 572 As~eeL~~v~Gig~~~A~~I~~~ 594 (598)
T PRK00558 572 ASVEELAKVPGISKKLAEAIYEA 594 (598)
T ss_pred CCHHHHhhcCCcCHHHHHHHHHH
Confidence 46789999999999999999765
No 212
>PF14443 DBC1: DBC1
Probab=37.43 E-value=1.6e+02 Score=26.53 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=31.9
Q ss_pred eEEEEecCC-CCCCCcccccCcccc-CCCCChhhHHHHHHHHHHHhcCCCCC
Q 010868 346 VFILVKRRD-EGLLAGLWEFPSIIL-DGETDITTRREAAECFLKKSFNLDPR 395 (498)
Q Consensus 346 kvLI~KRp~-~gllaGLWEFPggkv-e~~e~~e~~~~aL~rel~EElgi~v~ 395 (498)
+||+.+|.. -...||-|. |...- ++..++.++-...+|..++-.|++..
T Consensus 9 kFlv~~k~ke~~aiGG~Ws-psLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 9 KFLVGKKDKEIMAIGGPWS-PSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred eeEEeecCceEEecCCcCC-cccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 667766654 246789998 65321 22333455666777889999999875
No 213
>PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S13 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S13 is known to be involved in binding fMet-tRNA and, hence, in the initiation of translation. It is a basic protein of 115 to 177 amino-acid residues that contains thee helices and a beta-hairpin in the core of the protein, forming a helix-two turns-helix (H2TH) motif, and a non-globular C-terminal extension. This family of ribosomal proteins is present in prokaryotes, eukaryotes and archaea [, ].; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBN_M 2QBB_M 3I1M_M 3OFP_M 3OFX_M 3OFO_M 1VS5_M 3OAQ_M 2QAL_M 3J18_M ....
Probab=36.91 E-value=27 Score=30.20 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.0
Q ss_pred hhhhhcCCCCcHHHHHHHHHHh
Q 010868 193 VSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~a 214 (498)
.-.|.++.|||+.+|..|+..+
T Consensus 14 ~~aLt~IyGIG~~~A~~Ic~~l 35 (107)
T PF00416_consen 14 YIALTKIYGIGRRKAKQICKKL 35 (107)
T ss_dssp HHHHTTSTTBCHHHHHHHHHHT
T ss_pred HhHHhhhhccCHHHHHHHHHHc
Confidence 4679999999999999998654
No 214
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=36.75 E-value=1.1e+02 Score=31.37 Aligned_cols=119 Identities=18% Similarity=0.125 Sum_probs=72.0
Q ss_pred hhhhhhhcccccc--cccccCCCCCcccccccccccchhhhhhhhhhhhcccccccCCCCcchhhhhhcCHHHHHHHHHH
Q 010868 9 PLFSALSSLELRT--SLTSSSRSTPFEQNSSFWSLTMDNERKTKKKKERQLPEKKTALPLEEEDIEDLFSEKEVKKIRQS 86 (498)
Q Consensus 9 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (498)
++...+..+.++. .++...+.+|||-+.|+|... .. |-+.+..+..+
T Consensus 81 ~i~~~~~~~~~~~~~g~~~~~~~d~fe~lv~aI~~Q------------------qv-------------S~~~A~~i~~r 129 (285)
T COG0122 81 PIIDALGPLPLLRAPGLRLPLAPDPFEALVRAILSQ------------------QV-------------SVAAAAKIWAR 129 (285)
T ss_pred HHHHhcCccccccccCcccCCCCCHHHHHHHHHHHh------------------Hh-------------hHHHHHHHHHH
Confidence 3445555555555 566677899999999999887 32 22456678888
Q ss_pred HHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHh
Q 010868 87 LLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWA 164 (498)
Q Consensus 87 L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel~~~i~ 164 (498)
|..-|+..-. ..|-.+. ++.+..-..+.|- .+-...-+.+.+..+-+.+.+..++...+...+.+++.+.|-
T Consensus 130 l~~~~g~~~~-~~~~fpt----pe~l~~~~~~~l~-~~g~s~~Ka~yi~~~A~~~~~g~~~~~~l~~~~~e~a~e~L~ 201 (285)
T COG0122 130 LVSLYGNALE-IYHSFPT----PEQLAAADEEALR-RCGLSGRKAEYIISLARAAAEGELDLSELKPLSDEEAIEELT 201 (285)
T ss_pred HHHHhCCccc-cccCCCC----HHHHHhcCHHHHH-HhCCcHHHHHHHHHHHHHHHcCCccHHHhccCCHHHHHHHHH
Confidence 8888875422 1121111 1112222223333 233333445556666666677778999999999998877653
No 215
>PF00570 HRDC: HRDC domain Bloom syndrome. Werner syndrome.; InterPro: IPR002121 The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain associated with the human BLM gene result in Bloom Syndrome (BS), an autosomal recessive disorder characterised by proportionate pre- and postnatal growth deficiency; sun-sensitive, telangiectatic, hypo- and hyperpigmented skin; predisposition to malignancy; and chromosomal instability [].; GO: 0003676 nucleic acid binding, 0005622 intracellular; PDB: 3SAG_B 3SAH_B 2CPR_A 3SAF_B 3CYM_A 1WUD_A 2HBK_A 2HBJ_A 2HBM_A 2HBL_A ....
Probab=36.20 E-value=49 Score=25.46 Aligned_cols=31 Identities=32% Similarity=0.582 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHH
Q 010868 171 RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAG 208 (498)
Q Consensus 171 RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~ 208 (498)
.-..|.++|+. .|.+.++|.+++|+|++-+.
T Consensus 28 ~~~~L~~ia~~-------~P~s~~~L~~i~g~~~~~~~ 58 (68)
T PF00570_consen 28 SDEALLEIAKR-------LPTSIEELLQIPGMGKRKVR 58 (68)
T ss_dssp -HHHHHHHHHH---------SSHHHHHTSTTCGHHHHH
T ss_pred CHHHHHHHHHh-------CCCCHHHHHHccCCCHHHHH
Confidence 44566666654 59999999999999998665
No 216
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=34.95 E-value=27 Score=27.58 Aligned_cols=46 Identities=26% Similarity=0.258 Sum_probs=29.4
Q ss_pred hccCcHHHHHHHHHHHHHH-HHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 010868 164 AGLGYYRRARFLLEGAKMI-VAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 164 ~~lG~~~RA~~L~~~a~~i-~~~~g~~p~~~~~L~~LpGIG~~TA~~il 211 (498)
..+|++.||.+.+.-+..- +.+ -+--+.++|++++|+|+++.+-|.
T Consensus 15 ~~L~LS~Ra~n~L~~~~I~tv~d--L~~~s~~~L~~i~n~G~ksl~EI~ 61 (66)
T PF03118_consen 15 EDLGLSVRAYNCLKRAGIHTVGD--LVKYSEEDLLKIKNFGKKSLEEIK 61 (66)
T ss_dssp GGSTSBHHHHHHHHCTT--BHHH--HHCS-HHHHHTSTTSHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHhCCcCHHH--HHhCCHHHHHhCCCCCHhHHHHHH
Confidence 4588888888765544211 010 012356899999999999988764
No 217
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=34.54 E-value=25 Score=34.18 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=29.0
Q ss_pred hhhhhcCCCCcHHHHHHHHHH-hcCCcccccccchhhHHHhhhcc
Q 010868 193 VSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDGNVIRVLARLKAI 236 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~-a~~~p~~~VD~~v~Rvl~Rl~~i 236 (498)
...|+++.||||++|=+||+. ..+.-.-++++.=...+.|+=++
T Consensus 72 F~~LisVnGIGpK~ALaiLs~~~~~~l~~aI~~~d~~~L~k~PGI 116 (201)
T COG0632 72 FRLLISVNGIGPKLALAILSNLDPEELAQAIANEDVKALSKIPGI 116 (201)
T ss_pred HHHHHccCCccHHHHHHHHcCCCHHHHHHHHHhcChHhhhcCCCC
Confidence 467999999999999999975 33332333444444555555444
No 218
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=33.87 E-value=28 Score=35.85 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.1
Q ss_pred chhhhhcCCCCcHHHHHHHHHH
Q 010868 192 TVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~~ 213 (498)
.+++|+.+||||.++|.-|++.
T Consensus 328 ~~~~llRVPGiG~ksa~rIv~~ 349 (404)
T COG4277 328 PYKELLRVPGIGVKSARRIVMT 349 (404)
T ss_pred CHHHhcccCCCChHHHHHHHHH
Confidence 5789999999999999988753
No 219
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=33.80 E-value=39 Score=38.02 Aligned_cols=75 Identities=27% Similarity=0.344 Sum_probs=41.7
Q ss_pred HHhhhccHHH---HHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCC
Q 010868 124 VMLQQTRVQT---VIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVP 200 (498)
Q Consensus 124 Il~QqT~~~~---v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~Lp 200 (498)
-++|+.++++ |+.+..++... ..-....+.|+|-. |++.|++--.-+.+ -+..+.++|.++|
T Consensus 499 ~lL~~irDEaHRFAi~~hR~~r~~-----------~~~~L~~IpGIG~k-r~~~LL~~FGS~~~---I~~As~eeL~~vp 563 (577)
T PRK14668 499 HLLQRVRDEAHRFAVQYHQTLRDD-----------VSTVLDDVPGVGPE-TRKRLLRRFGSVEG---VREASVEDLRDVP 563 (577)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH-----------HHhHHhcCCCCCHH-HHHHHHHHcCCHHH---HHhCCHHHHHhCC
Confidence 4677887775 66666555442 11122223445542 44444332211111 1345678999999
Q ss_pred CCcHHHHHHHHHH
Q 010868 201 GIGNYTAGAIASI 213 (498)
Q Consensus 201 GIG~~TA~~il~~ 213 (498)
|||.++|..|..+
T Consensus 564 Gi~~~~A~~I~~~ 576 (577)
T PRK14668 564 GVGEKTAETIRER 576 (577)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988643
No 220
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=33.67 E-value=25 Score=40.35 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhh-h--hcCCCCcHHHHHHHHH
Q 010868 146 PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSD-L--RKVPGIGNYTAGAIAS 212 (498)
Q Consensus 146 Pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~-L--~~LpGIG~~TA~~il~ 212 (498)
-++.+|-.+..++|..+ -||.. .|.+|++..+.-. ..| .+. | +.|||||+.+|..++.
T Consensus 485 ~~~~Dl~~L~~~~L~~l---~g~g~Ksa~~Ll~~Ie~sk----~~~--l~r~l~ALgIpgIG~~~ak~L~~ 546 (689)
T PRK14351 485 ESLADLYDLTVADLAEL---EGWGETSAENLLAELEASR----EPP--LADFLVALGIPEVGPTTARNLAR 546 (689)
T ss_pred CCHHHHHHcCHHHHhcC---cCcchhHHHHHHHHHHHHc----cCC--HHHHHHHcCCCCcCHHHHHHHHH
Confidence 47888888887765433 25555 5666655544221 111 111 1 4577888777776653
No 221
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=33.17 E-value=79 Score=25.16 Aligned_cols=41 Identities=34% Similarity=0.637 Sum_probs=32.9
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhc
Q 010868 75 FSEKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQT 129 (498)
Q Consensus 75 ~~~~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT 129 (498)
|++..+..+...|++.|+.+ |.- .+.|-|.+|+-+|+..|-
T Consensus 23 ~~~~~v~~vl~~LL~lY~~n-----W~l---------IEed~Y~~L~dai~e~~e 63 (65)
T PF10440_consen 23 FSKKQVRPVLKNLLKLYDGN-----WEL---------IEEDNYRVLADAIFEEQE 63 (65)
T ss_pred CCHHHHHHHHHHHHHHHcCC-----chh---------hhcccHHHHHHHHHHHhh
Confidence 67788999999999999755 664 246899999999987663
No 222
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=32.33 E-value=80 Score=36.31 Aligned_cols=75 Identities=27% Similarity=0.227 Sum_probs=0.0
Q ss_pred HhhhccHHH---HHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCC
Q 010868 125 MLQQTRVQT---VIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVP 200 (498)
Q Consensus 125 l~QqT~~~~---v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~Lp 200 (498)
++|+.++++ |+.+.++...+--.-..|...+ |... |++.|++--.-+.+ -...+.++|.+++
T Consensus 610 ~Lq~iRDEaHRfAi~~hR~~r~k~~~~s~L~~IP-----------GIGpkr~k~LL~~FGSle~---I~~AS~eELa~V~ 675 (694)
T PRK14666 610 FLQHVRDTVHDYAIGRHRRARAGAALTGELQRVE-----------GIGPATARLLWERFGSLQA---MAAAGEEGLAAVP 675 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHhhCC-----------CCCHHHHHHHHHHhCCHHH---HHhcCHHHHHhcC
Q ss_pred CCcHHHHHHHHHH
Q 010868 201 GIGNYTAGAIASI 213 (498)
Q Consensus 201 GIG~~TA~~il~~ 213 (498)
|||+++|..|+.+
T Consensus 676 Gig~k~Ae~I~~~ 688 (694)
T PRK14666 676 GIGPARAAALHEH 688 (694)
T ss_pred CcCHHHHHHHHHH
No 223
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=31.72 E-value=1.4e+02 Score=31.86 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCC-HHHHHhCCHHHHHHH
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPT-IHHLAKASLEEVNEM 162 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt-~~~La~a~~eel~~~ 162 (498)
.=|.+.++++++.--...+.|...|.+|+++|.| .+-|.+++.|||.++
T Consensus 296 ~iPL~ei~~~~~~~~~~~k~v~~~~~~l~~~fG~E~~iL~~~~~eel~~~ 345 (374)
T TIGR00375 296 LIPLAEVIGVGPKKGIFTKAVQSLWEKLKKAFGTEIAVLHEAAEEDLARV 345 (374)
T ss_pred eCCHHHHHhhhcCCCCccHHHHHHHHHHHHHhccHHHHHhcCCHHHHHHH
Confidence 4588999999888767889999999999999964 778899999998543
No 224
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=29.26 E-value=53 Score=25.55 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=25.2
Q ss_pred HHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHH
Q 010868 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGA 179 (498)
Q Consensus 138 ~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a 179 (498)
-..|.+.|+|.+.|.+|+.++|..+ .++|- ..|+.|.+.-
T Consensus 16 ak~L~~~f~sl~~l~~a~~e~L~~i-~gIG~-~~A~si~~ff 55 (64)
T PF12826_consen 16 AKLLAKHFGSLEALMNASVEELSAI-PGIGP-KIAQSIYEFF 55 (64)
T ss_dssp HHHHHHCCSCHHHHCC--HHHHCTS-TT--H-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHcCHHHHhcc-CCcCH-HHHHHHHHHH
Confidence 3467788999999999999997543 44443 1566665543
No 225
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=28.71 E-value=1e+02 Score=31.23 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=34.3
Q ss_pred hccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 010868 164 AGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 164 ~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il 211 (498)
...|+.+-|.++.++++.|..+ +..+...|.+|||||+..+..+-
T Consensus 124 ~~~~~~~~~~~~l~L~q~i~q~---~w~~~~~L~Qlp~i~~~~~~~l~ 168 (312)
T smart00611 124 LERGWLSTALNALNLSQMIIQA---LWPTDSPLLQLPHLPEEILKRLE 168 (312)
T ss_pred HhcchHHHHHHHHHHHHHHHHh---hCCCCCccccCCCCCHHHHHHHH
Confidence 3467777899999999999874 22234569999999998777664
No 226
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.67 E-value=62 Score=28.83 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=48.0
Q ss_pred CCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhc
Q 010868 200 PGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVIC 277 (498)
Q Consensus 200 pGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC 277 (498)
=|||.++.=+=.+--.|-.++++|.|-.++=.-+-.+..+..++ ...+.+-+..+..--.+.+++.+++++.+.+=
T Consensus 20 VGiG~~~~VA~~L~e~g~dv~atDI~~~~a~~g~~~v~DDitnP--~~~iY~~A~lIYSiRpppEl~~~ildva~aVg 95 (129)
T COG1255 20 VGIGFFLDVAKRLAERGFDVLATDINEKTAPEGLRFVVDDITNP--NISIYEGADLIYSIRPPPELQSAILDVAKAVG 95 (129)
T ss_pred EccchHHHHHHHHHHcCCcEEEEecccccCcccceEEEccCCCc--cHHHhhCccceeecCCCHHHHHHHHHHHHhhC
Confidence 49999875555555555678889988875443332333333322 22445555555445557899999999998774
No 227
>PF01367 5_3_exonuc: 5'-3' exonuclease, C-terminal SAM fold; InterPro: IPR020045 This entry represents the C-terminal domain of 5' to 3' exonucleases. The 5'-3' exonucleases are conserved in organisms as diverse as bacteriophage and mammals. It adopts a SAM fold consisting of 4-5 helices packed into a bundle of two orthogonally packed alpha-hairpins. This domain is involved in interactions with DNA and proteins. 5' to 3' exonucleases that contain this domain include: Bacteriophage T4 RNase H, which has sequence similarity to the RAD2 family of eukaryotic proteins []. 5' to 3' exonuclease domain of DNA polymerase Taq, which is homologous to Escherichia coli DNA polymerase I (pol I) [, ]. Bacteriophage T5 5'-exonuclease, which are structure-specific endonucleases []. Flap endonuclease-1 (Fen-1 nuclease), a structure specific nuclease that is an essential enzyme for eukaryotic DNA replication and repair []. ; GO: 0003677 DNA binding, 0003824 catalytic activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B.
Probab=28.33 E-value=13 Score=31.98 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=14.2
Q ss_pred hhhhhcCCCCcHHHHHHHHHHh
Q 010868 193 VSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~a 214 (498)
-+-+-.+||||+|||..++.--
T Consensus 17 sDNIPGV~GIG~KtA~~LL~~y 38 (101)
T PF01367_consen 17 SDNIPGVPGIGPKTAAKLLQEY 38 (101)
T ss_dssp CCTB---TTSTCHCCCCCHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHc
Confidence 3445679999999998777643
No 228
>PRK00254 ski2-like helicase; Provisional
Probab=27.95 E-value=57 Score=37.59 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchh
Q 010868 174 FLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVI 227 (498)
Q Consensus 174 ~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~ 227 (498)
.|.++++.+.. .+++..-.|.++||||+.+|...+..+|+-..-+.+....
T Consensus 628 ~l~~l~~rl~~---g~~~~~~~L~~ipgig~~~~~~l~~~g~~s~~~i~~a~~~ 678 (720)
T PRK00254 628 YLETLHLRVKH---GVREELLELMRLPMIGRKRARALYNAGFRSIEDIVNAKPS 678 (720)
T ss_pred HHHHHHHHHHc---CCCHHHhhhhcCCCCCHHHHHHHHHccCCCHHHHHhCCHH
Confidence 44466666665 3566667788899999999998888878765433333333
No 229
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=26.82 E-value=1.4e+02 Score=28.18 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=31.0
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcC
Q 010868 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFN 391 (498)
Q Consensus 345 gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElg 391 (498)
-+||+-|-. .-++-.|||++.+||+. .+-|.|.+.|.||
T Consensus 84 PHvLLLQig-----~tf~KLPGG~L~pGE~e---~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 84 PHVLLLQIG-----NTFFKLPGGRLRPGEDE---ADGLKRLLTESLG 122 (221)
T ss_pred CeEEEEeeC-----CEEEecCCCccCCCcch---hHHHHHHHHHHhc
Confidence 477777743 24788999999999876 5789999999988
No 230
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=26.73 E-value=17 Score=32.64 Aligned_cols=74 Identities=15% Similarity=0.083 Sum_probs=38.7
Q ss_pred CCcHHHHHHHHHHhcCCcccccccchhhHHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchh
Q 010868 201 GIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVI 276 (498)
Q Consensus 201 GIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~i 276 (498)
|||.++--+-.+.-.|..+.++|.|-..+-..+-.+..+.-++ .-.+.+-+..+..-..+.++|..|+++++.+
T Consensus 21 GiG~~~~vA~~L~~~G~dV~~tDi~~~~a~~g~~~v~DDif~P--~l~iY~~a~lIYSiRPP~El~~~il~lA~~v 94 (127)
T PF03686_consen 21 GIGFNPEVAKKLKERGFDVIATDINPRKAPEGVNFVVDDIFNP--NLEIYEGADLIYSIRPPPELQPPILELAKKV 94 (127)
T ss_dssp T-TT--HHHHHHHHHS-EEEEE-SS-S----STTEE---SSS----HHHHTTEEEEEEES--TTSHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHcCCcEEEEECcccccccCcceeeecccCC--CHHHhcCCcEEEEeCCChHHhHHHHHHHHHh
Confidence 9999987777777777889999999986554444443333322 1233333333333344689999999999987
No 231
>COG1491 Predicted RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=26.60 E-value=41 Score=32.20 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=22.6
Q ss_pred chhhhhcCCCCcHHHHHHHHHHhcCCc
Q 010868 192 TVSDLRKVPGIGNYTAGAIASIAFKEV 218 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~~a~~~p 218 (498)
-+..|.-|||||.||...||---=.+|
T Consensus 128 RLH~LELLpGiGkK~m~~ILeERkkkp 154 (202)
T COG1491 128 RLHQLELLPGIGKKTMWAILEERKKKP 154 (202)
T ss_pred HHHHHHhcccccHHHHHHHHHHHhcCC
Confidence 457899999999999999998665555
No 232
>PRK14976 5'-3' exonuclease; Provisional
Probab=26.54 E-value=38 Score=34.52 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=14.9
Q ss_pred hhhcCCCCcHHHHHHHHH
Q 010868 195 DLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 195 ~L~~LpGIG~~TA~~il~ 212 (498)
-+-.+||||++||..++.
T Consensus 192 nipGVpGIG~KtA~~LL~ 209 (281)
T PRK14976 192 NIKGVKGIGPKTAIKLLN 209 (281)
T ss_pred CCCCCCcccHHHHHHHHH
Confidence 345799999999998875
No 233
>PRK09482 flap endonuclease-like protein; Provisional
Probab=26.23 E-value=40 Score=33.96 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.2
Q ss_pred hhhcCCCCcHHHHHHHHHH
Q 010868 195 DLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 195 ~L~~LpGIG~~TA~~il~~ 213 (498)
-+-.+||||++||.-++.-
T Consensus 183 nIpGVpGIG~KtA~~LL~~ 201 (256)
T PRK09482 183 KIPGVAGIGPKSAAELLNQ 201 (256)
T ss_pred CCCCCCCcChHHHHHHHHH
Confidence 3457899999999988763
No 234
>PF04891 NifQ: NifQ; InterPro: IPR006975 NifQ is involved in early stages of the biosynthesis of the iron-molybdenum cofactor (FeMo-co) [], which is an integral part of the active site of dinitrogenase []. The conserved C-terminal cysteine residues may be involved in metal binding [].; GO: 0030151 molybdenum ion binding, 0009399 nitrogen fixation
Probab=25.67 E-value=1.3e+02 Score=28.31 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=47.8
Q ss_pred CcHHHHHHHHHHhcCCccccccc------chhhHHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChHHH--HHHHHHhc
Q 010868 202 IGNYTAGAIASIAFKEVVPVVDG------NVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDF--NQSLMELG 273 (498)
Q Consensus 202 IG~~TA~~il~~a~~~p~~~VD~------~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~--~~~l~~~G 273 (498)
.+.|.|.+|..-+++..-.=.|- .+.+.+.|.| -.++......-.|..| -+.--.-|
T Consensus 83 ~~~wlA~iiA~~~l~~~HLWqDLGL~~R~eLs~Lm~r~F---------------p~Laa~N~~~MrWKKFfYrqlCe~eG 147 (167)
T PF04891_consen 83 EARWLAHIIARACLGPDHLWQDLGLRSRAELSALMRRHF---------------PPLAARNTRNMRWKKFFYRQLCEREG 147 (167)
T ss_pred HHHHHHHHHHHHHcCCCccHHhcCCCCHHHHHHHHHHHh---------------HHHHHhccCCCcHHHHHHHHHHHHcC
Confidence 45789999998888865433332 2233333332 2334444445567554 55666889
Q ss_pred chhccCCCCCCCCCCCcccC
Q 010868 274 AVICTPLNPNCTSCPVSDKC 293 (498)
Q Consensus 274 ~~iC~~~~P~C~~CpL~~~C 293 (498)
-.+|++ |.|+.|.=...|
T Consensus 148 ~~~C~a--PsC~~C~D~~~C 165 (167)
T PF04891_consen 148 LYLCRA--PSCEECSDYAVC 165 (167)
T ss_pred CCcCCC--CCCCCcCCHhhc
Confidence 999985 999999877777
No 235
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=25.59 E-value=1.1e+02 Score=34.53 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=45.0
Q ss_pred HHHhhhccHHH---HHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcC
Q 010868 123 EVMLQQTRVQT---VIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKV 199 (498)
Q Consensus 123 ~Il~QqT~~~~---v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~L 199 (498)
--++|+.++++ |+.+..++..+-- .....++ |.|+|--+|...|..+.. +.+ --..+.++|.++
T Consensus 485 l~lLq~irDEaHRFAi~~hR~~r~k~~-----~~S~Ld~----I~GiG~kr~~~Ll~~Fgs-~~~---ik~As~eeL~~v 551 (567)
T PRK14667 485 YKVFGLIRDEAHRFALSYNRKLREKEG-----LKDILDK----IKGIGEVKKEIIYRNFKT-LYD---FLKADDEELKKL 551 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-----ccCcccc----CCCCCHHHHHHHHHHhCC-HHH---HHhCCHHHHHHc
Confidence 34788888876 6677666654311 1122222 466776544444433322 211 113568888899
Q ss_pred CCCcHHHHHHHHHH
Q 010868 200 PGIGNYTAGAIASI 213 (498)
Q Consensus 200 pGIG~~TA~~il~~ 213 (498)
|||..+|..|..+
T Consensus 552 -gi~~~~A~~I~~~ 564 (567)
T PRK14667 552 -GIPPSVKQEVKKY 564 (567)
T ss_pred -CCCHHHHHHHHHH
Confidence 9999999888765
No 236
>PRK07758 hypothetical protein; Provisional
Probab=25.37 E-value=48 Score=28.32 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=16.8
Q ss_pred CchhhhhcCCCCcHHHHHHHH
Q 010868 191 NTVSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il 211 (498)
-+.++|++++|+|+++.+-|-
T Consensus 64 ~te~ELl~iknlGkKSL~EIk 84 (95)
T PRK07758 64 YSEKEILKLHGMGPASLPKLR 84 (95)
T ss_pred CCHHHHHHccCCCHHHHHHHH
Confidence 356788999999999887764
No 237
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=25.02 E-value=43 Score=33.12 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=14.5
Q ss_pred hhhcCCCCcHHHHHHHHH
Q 010868 195 DLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 195 ~L~~LpGIG~~TA~~il~ 212 (498)
-+-.+||||++||.-++.
T Consensus 184 nipGv~GiG~ktA~~Ll~ 201 (240)
T cd00008 184 NIPGVPGIGEKTAAKLLK 201 (240)
T ss_pred CCCCCCccCHHHHHHHHH
Confidence 446789999999977764
No 238
>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication. NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic.
Probab=24.99 E-value=1.2e+02 Score=21.65 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=27.3
Q ss_pred hCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHH
Q 010868 144 KWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKM 181 (498)
Q Consensus 144 ~fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~ 181 (498)
.|-|.++|+.++.+++... -|+.. +|..|+..|+.
T Consensus 13 G~~s~e~la~~~~~eL~~i---~g~~~e~a~~ii~~a~~ 48 (50)
T TIGR01954 13 GFTTVEDLAYVPIDELLSI---EGFDEETAKELINRARN 48 (50)
T ss_pred CCCCHHHHHccCHHHHhcC---CCCCHHHHHHHHHHHHH
Confidence 4789999999999998664 56666 88888777763
No 239
>PRK00254 ski2-like helicase; Provisional
Probab=24.94 E-value=1.1e+02 Score=35.28 Aligned_cols=55 Identities=31% Similarity=0.203 Sum_probs=32.4
Q ss_pred HHHHHHHHhccCcHH-HHHHHHHH-HHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHH
Q 010868 156 LEEVNEMWAGLGYYR-RARFLLEG-AKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 156 ~eel~~~i~~lG~~~-RA~~L~~~-a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
.+++..+.+--|+.+ ||+.|.+. -.-+.+ -.-.+.++|.+++|||+++|..|..+
T Consensus 641 ~~~~~~L~~ipgig~~~~~~l~~~g~~s~~~---i~~a~~~el~~~~gi~~~~a~~i~~~ 697 (720)
T PRK00254 641 REELLELMRLPMIGRKRARALYNAGFRSIED---IVNAKPSELLKVEGIGAKIVEGIFKH 697 (720)
T ss_pred CHHHhhhhcCCCCCHHHHHHHHHccCCCHHH---HHhCCHHHHhcCCCCCHHHHHHHHHH
Confidence 344444444345555 66665543 111111 01235788999999999999999776
No 240
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=24.57 E-value=1e+02 Score=32.03 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=43.1
Q ss_pred HHHHHHHhCC-CHHHH---HhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHH
Q 010868 137 YYNRWMTKWP-TIHHL---AKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 137 ~~~~l~~~fP-t~~~L---a~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~ 212 (498)
.+..|...|| ...+| ...++..+..+|+-+|.-.. ..|+++++ + |. +..|+|+|.+.+.-||-
T Consensus 80 ~le~lk~~~P~gl~~Ll~v~GlGpkKi~~Ly~elgi~~~-e~l~~a~~---~--~~-------~~~l~GfG~kse~~il~ 146 (326)
T COG1796 80 KLEALKKEVPEGLEPLLKVPGLGPKKIVSLYKELGIKDL-EELQEALE---N--GK-------IRGLRGFGKKSEAKILE 146 (326)
T ss_pred HHHHHHHhCCcchHHHhhCCCCCcHHHHHHHHHHCcccH-HHHHHHHH---h--CC-------ccccCCccchhHHHHHH
Confidence 6677888888 34444 44578888888888887333 23333333 1 22 36799999999999885
Q ss_pred H
Q 010868 213 I 213 (498)
Q Consensus 213 ~ 213 (498)
.
T Consensus 147 ~ 147 (326)
T COG1796 147 N 147 (326)
T ss_pred H
Confidence 4
No 241
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=24.16 E-value=1.4e+02 Score=34.47 Aligned_cols=85 Identities=22% Similarity=0.126 Sum_probs=49.3
Q ss_pred HHHhhhccHHH---HHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcC
Q 010868 123 EVMLQQTRVQT---VIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKV 199 (498)
Q Consensus 123 ~Il~QqT~~~~---v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~L 199 (498)
--|+|+.++++ |+.+..++..+ .+.....++ |.|+|--+|.+.|..+.. +.+ --..+.++|.++
T Consensus 579 l~lLq~iRDEaHRFAIt~hR~~R~k-----~~~~s~L~~----IpGiG~kr~~~LL~~FgS-~~~---i~~As~eel~~v 645 (691)
T PRK14672 579 LHMLQRIRDEAHRFAITRNRHLRTK-----KELVLSFER----LPHVGKVRAHRLLAHFGS-FRS---LQSATPQDIATA 645 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-----hhccccccc----CCCCCHHHHHHHHHHhcC-HHH---HHhCCHHHHHhC
Confidence 35788898876 66666665443 111222222 466666444444433321 211 123567888888
Q ss_pred CCCcHHHHHHHHHHhcCCccc
Q 010868 200 PGIGNYTAGAIASIAFKEVVP 220 (498)
Q Consensus 200 pGIG~~TA~~il~~a~~~p~~ 220 (498)
||||..+|..|+--+..-...
T Consensus 646 ~gi~~~~A~~i~~~~~~~~~~ 666 (691)
T PRK14672 646 IHIPLTQAHTILHAATRSTTA 666 (691)
T ss_pred CCCCHHHHHHHHHHhhccccc
Confidence 999999988888777654433
No 242
>smart00475 53EXOc 5'-3' exonuclease.
Probab=23.84 E-value=48 Score=33.36 Aligned_cols=17 Identities=41% Similarity=0.677 Sum_probs=14.4
Q ss_pred hhcCCCCcHHHHHHHHH
Q 010868 196 LRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 196 L~~LpGIG~~TA~~il~ 212 (498)
+-.+||||++||.-++.
T Consensus 188 ipGV~GIG~KtA~~Ll~ 204 (259)
T smart00475 188 IPGVPGIGEKTAAKLLK 204 (259)
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 45789999999998775
No 243
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=22.82 E-value=38 Score=35.18 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=34.9
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCC
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPR 395 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~ 395 (498)
-.++|+++= .-+-=|.||.||+...|.. ..+..||..||.|.+..
T Consensus 94 ~sr~llv~g----~qa~sw~fprgK~~kdesd---~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 94 RSRCLLVKG----WQASSWSFPRGKISKDESD---SDCAIREVTEETGFDYS 138 (348)
T ss_pred hhhhheeec----eecccccccCccccccchh---hhcchhcccchhhcCHH
Confidence 368888873 3344499999999887655 67888999999998875
No 244
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=22.67 E-value=3.7e+02 Score=29.04 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 010868 78 KEVKKIRQSLLQWYDK 93 (498)
Q Consensus 78 ~~~~~~~~~L~~wy~~ 93 (498)
+++..+..+|.+||+-
T Consensus 153 k~in~~~~RLrewY~~ 168 (414)
T PRK14552 153 KTINLFSERLREWYSL 168 (414)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6788999999999974
No 245
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=22.43 E-value=2e+02 Score=26.06 Aligned_cols=57 Identities=25% Similarity=0.324 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHH
Q 010868 115 RAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEG 178 (498)
Q Consensus 115 dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~ 178 (498)
.-+..|+..|=+.+.+++.+.+ ..-|.++|.+.++++|..++..+|++. =.++|.++
T Consensus 67 P~l~~WL~vVgl~~~~i~~i~~-------~~~tLe~Llemsd~el~~~l~~~g~~~EE~rRL~~A 124 (129)
T PF13543_consen 67 PSLRQWLRVVGLRPESIQAILS-------KVLTLEALLEMSDEELKEILNRCGAREEECRRLCRA 124 (129)
T ss_pred CcHHHHhhhcCCCHHHHHHHHH-------hhcCHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3577788877666665555532 356999999999999999999999987 34444443
No 246
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=22.00 E-value=55 Score=29.21 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=18.4
Q ss_pred hhhhhcCCCCcHHHHHHHHHH
Q 010868 193 VSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~ 213 (498)
.-.|..+.|||+.+|..|+..
T Consensus 16 ~~aLt~i~GIG~~~A~~ic~~ 36 (122)
T CHL00137 16 EYALTYIYGIGLTSAKEILEK 36 (122)
T ss_pred eeeecccccccHHHHHHHHHH
Confidence 457899999999999999876
No 247
>COG0258 Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
Probab=21.61 E-value=1.4e+02 Score=30.62 Aligned_cols=48 Identities=33% Similarity=0.418 Sum_probs=28.6
Q ss_pred CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHH
Q 010868 154 ASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 154 a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~ 212 (498)
.+.++|.+.+++++-. .|++++..+-+....+| .++|||++||--++.
T Consensus 169 ~~~~~~~e~~~g~~p~----qliD~~~L~Gd~sDnip-------GV~GIG~ktA~~Ll~ 216 (310)
T COG0258 169 LDLEEVEEKFKGLTPE----QLIDLKALVGDSSDNIP-------GVKGIGPKTALKLLQ 216 (310)
T ss_pred CCHHHHHHHHcCCCHH----HHHHHHHHhCCcccCCC-------CCCCcCHHHHHHHHH
Confidence 4556666666566552 56665544322122233 399999999987664
No 248
>PF04919 DUF655: Protein of unknown function (DUF655); InterPro: IPR007003 This family includes several uncharacterised archaeal proteins.; PDB: 2I5H_A.
Probab=21.35 E-value=61 Score=30.94 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=19.1
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCCc
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~p 218 (498)
.-+..|.=|||||.++...||----..|
T Consensus 113 ~RlH~LeLLPGIGKK~m~~ILeERkkkp 140 (181)
T PF04919_consen 113 LRLHSLELLPGIGKKTMWKILEERKKKP 140 (181)
T ss_dssp SSSBGGGGSTT--HHHHHHHHHHHHHS-
T ss_pred HHHHHHhhcccccHHHHHHHHHHHccCC
Confidence 4467888999999999999986543334
No 249
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=20.70 E-value=1.5e+02 Score=29.50 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=23.3
Q ss_pred HHHHh-CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHH
Q 010868 140 RWMTK-WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAK 180 (498)
Q Consensus 140 ~l~~~-fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~ 180 (498)
.|++. |.|+++|+.|+.++|.++ -|+.. +|..|++...
T Consensus 18 kLl~~GF~Sve~Ik~AS~eEL~~V---~GIg~k~AekI~e~l~ 57 (232)
T PRK12766 18 ALREAGFESVEDVRAADQSELAEV---DGIGNALAARIKADVG 57 (232)
T ss_pred HHHHcCCCCHHHHHhCCHHHHHHc---cCCCHHHHHHHHHHhc
Confidence 45556 777777777777776443 35544 5666655544
No 250
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=20.09 E-value=1.2e+02 Score=25.37 Aligned_cols=53 Identities=28% Similarity=0.217 Sum_probs=31.2
Q ss_pred CHHHHHHHHhccCcHH-HHHHHHHHH----HHHHHcCCCCCCchhhhhc-CCCCcHHHHHHHHHH
Q 010868 155 SLEEVNEMWAGLGYYR-RARFLLEGA----KMIVAEGDGFPNTVSDLRK-VPGIGNYTAGAIASI 213 (498)
Q Consensus 155 ~~eel~~~i~~lG~~~-RA~~L~~~a----~~i~~~~g~~p~~~~~L~~-LpGIG~~TA~~il~~ 213 (498)
+..++...+...|+.. .|..|.+.- -.++++ +.=.|.. ++|||-++||.|..-
T Consensus 7 ~~~~~~~~L~~~gl~~~~a~kl~~~yg~~ai~~l~~------nPY~L~~~i~gi~F~~aD~iA~~ 65 (94)
T PF14490_consen 7 GLRELMAFLQEYGLSPKLAMKLYKKYGDDAIEILKE------NPYRLIEDIDGIGFKTADKIALK 65 (94)
T ss_dssp --HHHHHHHHHTT--HHHHHHHHHHH-TTHHHHHHH-------STCCCB-SSSSBHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHH------ChHHHHHHccCCCHHHHHHHHHH
Confidence 4456777788899976 566665541 111111 1123455 899999999999774
Done!