Query 010868
Match_columns 498
No_of_seqs 358 out of 2630
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fsp_A A/G-specific adenine gl 100.0 1.3E-77 4.6E-82 624.3 37.8 348 82-476 15-363 (369)
2 3n5n_X A/G-specific adenine DN 100.0 1.6E-55 5.5E-60 441.1 20.0 225 74-300 8-235 (287)
3 1kg2_A A/G-specific adenine gl 100.0 1.5E-52 5.2E-57 408.0 23.7 219 82-316 5-225 (225)
4 1kea_A Possible G-T mismatches 100.0 1.3E-50 4.3E-55 393.5 23.3 212 77-299 6-219 (221)
5 1orn_A Endonuclease III; DNA r 100.0 5.5E-47 1.9E-51 369.0 23.1 204 78-298 8-213 (226)
6 2abk_A Endonuclease III; DNA-r 100.0 7.4E-47 2.5E-51 364.5 18.8 202 78-297 4-207 (211)
7 1pu6_A 3-methyladenine DNA gly 100.0 1.9E-35 6.5E-40 286.2 15.1 178 81-275 5-212 (218)
8 4e9f_A Methyl-CPG-binding doma 100.0 6.2E-32 2.1E-36 249.3 14.2 132 99-237 15-149 (161)
9 3fhg_A Mjogg, N-glycosylase/DN 100.0 1.8E-29 6.1E-34 242.5 6.9 168 78-279 9-189 (207)
10 3fhf_A Mjogg, N-glycosylase/DN 99.9 1.8E-28 6.3E-33 235.9 8.5 145 114-279 42-196 (214)
11 4b21_A Probable DNA-3-methylad 99.9 8E-27 2.7E-31 227.6 16.0 154 85-258 38-212 (232)
12 2h56_A DNA-3-methyladenine gly 99.9 6.6E-27 2.3E-31 228.4 12.9 156 114-276 49-218 (233)
13 3n0u_A Probable N-glycosylase/ 99.9 2.7E-27 9.1E-32 228.7 6.7 144 78-238 18-174 (219)
14 3s6i_A DNA-3-methyladenine gly 99.9 7E-25 2.4E-29 213.4 17.3 147 115-274 49-215 (228)
15 2yg9_A DNA-3-methyladenine gly 99.9 2.2E-25 7.6E-30 216.6 13.2 139 114-266 59-210 (225)
16 3i0w_A 8-oxoguanine-DNA-glycos 99.9 4E-25 1.4E-29 222.4 13.1 152 114-275 113-287 (290)
17 1x51_A A/G-specific adenine DN 99.9 2.6E-24 9E-29 195.0 10.0 141 307-474 4-149 (155)
18 2xhi_A N-glycosylase/DNA lyase 99.9 1.9E-23 6.5E-28 215.9 16.2 120 114-236 150-296 (360)
19 1mpg_A ALKA, 3-methyladenine D 99.9 1.1E-22 3.8E-27 203.9 15.3 142 114-269 111-273 (282)
20 3ees_A Probable pyrophosphohyd 99.9 4.7E-22 1.6E-26 178.2 12.8 141 307-475 2-147 (153)
21 2jhn_A ALKA, 3-methyladenine D 99.9 2.3E-22 7.9E-27 202.8 11.2 142 114-265 116-279 (295)
22 3hhj_A Mutator MUTT protein; n 99.8 3.5E-20 1.2E-24 168.1 13.0 140 309-474 17-156 (158)
23 2rrk_A ORF135, CTP pyrophospho 99.8 5.1E-20 1.8E-24 162.7 12.0 130 319-476 6-135 (140)
24 3r03_A Nudix hydrolase; struct 99.8 9E-20 3.1E-24 162.1 12.0 121 342-476 17-137 (144)
25 1mut_A MUTT, nucleoside tripho 99.8 4.7E-20 1.6E-24 160.4 9.5 115 342-472 13-127 (129)
26 3gwy_A Putative CTP pyrophosph 99.8 1.6E-19 5.4E-24 160.6 9.6 115 344-474 16-132 (140)
27 3grn_A MUTT related protein; s 99.8 1.7E-18 5.7E-23 156.2 13.7 121 342-477 17-139 (153)
28 3exq_A Nudix family hydrolase; 99.7 8.5E-17 2.9E-21 146.8 12.4 112 345-473 23-136 (161)
29 3id9_A MUTT/nudix family prote 99.7 7.3E-17 2.5E-21 148.0 10.1 150 277-474 1-151 (171)
30 3oga_A Nucleoside triphosphata 99.7 2E-16 7E-21 144.2 11.5 115 342-471 36-162 (165)
31 3q93_A 7,8-dihydro-8-oxoguanin 99.7 2.1E-16 7.3E-21 146.7 11.5 117 342-475 33-151 (176)
32 1vcd_A NDX1; nudix protein, di 99.6 5.5E-16 1.9E-20 134.4 10.4 113 342-474 11-123 (126)
33 2pbt_A AP4A hydrolase; nudix p 99.6 5.7E-16 2E-20 135.5 10.2 112 344-475 14-129 (134)
34 2fkb_A Putative nudix hydrolas 99.6 7.2E-16 2.5E-20 142.5 10.8 120 342-476 46-169 (180)
35 2b06_A MUTT/nudix family prote 99.6 1.2E-15 4.1E-20 137.3 10.7 111 347-475 25-136 (155)
36 4dyw_A MUTT/nudix family prote 99.6 3.2E-15 1.1E-19 135.7 12.7 115 344-473 39-155 (157)
37 3i7u_A AP4A hydrolase; nudix p 99.6 2.5E-15 8.5E-20 133.6 9.8 112 343-474 13-128 (134)
38 3fk9_A Mutator MUTT protein; s 99.6 8.1E-15 2.8E-19 137.7 10.6 113 343-474 13-130 (188)
39 1rya_A GDP-mannose mannosyl hy 99.6 4.4E-15 1.5E-19 134.0 8.4 118 342-472 27-153 (160)
40 2azw_A MUTT/nudix family prote 99.6 3.1E-15 1.1E-19 133.0 7.2 110 344-473 30-145 (148)
41 2o1c_A DATP pyrophosphohydrola 99.6 2.8E-15 9.5E-20 133.2 5.9 115 344-474 21-148 (150)
42 1nqz_A COA pyrophosphatase (MU 99.5 1.4E-15 4.7E-20 142.8 3.6 144 284-457 3-150 (194)
43 1ktg_A Diadenosine tetraphosph 99.5 9.3E-15 3.2E-19 128.6 8.3 118 344-475 17-135 (138)
44 1sjy_A MUTT/nudix family prote 99.5 1.4E-14 5E-19 130.4 9.5 107 342-461 22-133 (159)
45 2b0v_A Nudix hydrolase; struct 99.5 2.5E-14 8.6E-19 128.0 10.0 119 342-474 16-139 (153)
46 3gg6_A Nudix motif 18, nucleos 99.5 6.4E-14 2.2E-18 126.3 10.5 119 342-475 29-147 (156)
47 1q27_A Putative nudix hydrolas 99.5 1.3E-14 4.5E-19 132.9 5.2 121 342-476 43-168 (171)
48 3eds_A MUTT/nudix family prote 99.5 1.2E-13 4.2E-18 124.6 10.1 104 342-464 30-141 (153)
49 3cng_A Nudix hydrolase; struct 99.5 2.1E-13 7.3E-18 127.7 11.5 120 344-486 50-171 (189)
50 3o8s_A Nudix hydrolase, ADP-ri 99.5 2.2E-13 7.4E-18 129.7 11.0 113 344-476 80-197 (206)
51 3e57_A Uncharacterized protein 99.4 2.4E-14 8.2E-19 137.4 3.7 120 342-474 76-206 (211)
52 3f6a_A Hydrolase, nudix family 99.4 4.8E-13 1.7E-17 121.1 11.9 112 344-473 16-149 (159)
53 3son_A Hypothetical nudix hydr 99.4 2.8E-13 9.5E-18 121.1 9.8 119 342-476 17-142 (149)
54 1k2e_A Nudix homolog; nudix/MU 99.4 2.7E-13 9.3E-18 122.7 9.9 106 344-474 11-135 (156)
55 3f13_A Putative nudix hydrolas 99.4 2.4E-12 8.2E-17 118.2 14.2 109 342-476 24-132 (163)
56 3shd_A Phosphatase NUDJ; nudix 99.4 9.3E-13 3.2E-17 118.0 10.6 118 342-474 13-133 (153)
57 2yyh_A MUTT domain, 8-OXO-DGTP 99.4 3.2E-12 1.1E-16 112.8 13.3 106 343-473 21-136 (139)
58 2pqv_A MUTT/nudix family prote 99.4 3.4E-13 1.2E-17 121.2 6.5 106 343-466 28-137 (154)
59 1hzt_A Isopentenyl diphosphate 99.3 1E-12 3.5E-17 122.9 7.0 120 342-476 41-174 (190)
60 3q1p_A Phosphohydrolase (MUTT/ 99.3 2.9E-12 9.9E-17 121.8 9.7 114 344-476 78-196 (205)
61 3u53_A BIS(5'-nucleosyl)-tetra 99.3 4.4E-12 1.5E-16 114.5 10.2 120 342-477 21-144 (155)
62 3i9x_A MUTT/nudix family prote 99.3 1.7E-12 5.8E-17 121.1 6.6 121 344-476 45-173 (187)
63 1v8y_A ADP-ribose pyrophosphat 99.3 3.8E-12 1.3E-16 116.7 7.5 101 344-458 44-144 (170)
64 1f3y_A Diadenosine 5',5'''-P1, 99.3 1.4E-12 5E-17 117.6 4.5 117 342-473 23-159 (165)
65 2qjt_B Nicotinamide-nucleotide 99.3 1.2E-11 4E-16 126.3 11.4 121 343-475 217-348 (352)
66 2yvp_A NDX2, MUTT/nudix family 99.3 1.2E-12 4.3E-17 121.2 3.7 104 342-458 50-154 (182)
67 2qjo_A Bifunctional NMN adenyl 99.3 6.7E-12 2.3E-16 127.3 8.9 118 343-473 212-339 (341)
68 1vk6_A NADH pyrophosphatase; 1 99.3 2E-11 6.7E-16 121.4 11.7 112 342-471 148-260 (269)
69 2w4e_A MUTT/nudix family prote 99.2 5E-12 1.7E-16 113.0 5.2 104 342-458 14-117 (145)
70 3fcm_A Hydrolase, nudix family 99.2 9.3E-11 3.2E-15 110.3 12.4 117 344-477 57-186 (197)
71 3gz5_A MUTT/nudix family prote 99.2 2.4E-11 8.3E-16 118.6 8.1 120 343-477 35-158 (240)
72 3h95_A Nucleoside diphosphate- 99.2 3.8E-11 1.3E-15 113.2 8.8 118 342-473 36-156 (199)
73 2jvb_A Protein PSU1, mRNA-deca 99.2 2.9E-11 9.9E-16 107.4 7.4 104 344-464 16-120 (146)
74 1u20_A U8 snoRNA-binding prote 99.2 1.4E-11 4.8E-16 117.9 5.2 121 342-474 53-192 (212)
75 2fb1_A Conserved hypothetical 99.2 4.5E-11 1.5E-15 115.5 8.9 112 343-471 26-139 (226)
76 1vhz_A ADP compounds hydrolase 99.2 2.6E-11 9E-16 114.7 6.7 101 346-459 61-161 (198)
77 1mk1_A ADPR pyrophosphatase; n 99.1 8.9E-12 3.1E-16 118.5 2.7 107 342-460 52-160 (207)
78 2kdv_A RNA pyrophosphohydrolas 99.1 2.3E-10 8E-15 104.6 10.5 115 342-472 17-148 (164)
79 3fjy_A Probable MUTT1 protein; 99.1 9.8E-11 3.4E-15 120.7 5.7 119 343-475 36-175 (364)
80 2dho_A Isopentenyl-diphosphate 99.0 7.7E-10 2.6E-14 107.7 9.7 126 342-474 68-215 (235)
81 2a6t_A SPAC19A8.12; alpha/beta 99.0 1.1E-09 3.8E-14 108.8 11.0 102 344-461 113-215 (271)
82 2fvv_A Diphosphoinositol polyp 99.0 3.6E-10 1.2E-14 106.6 6.4 116 342-474 51-168 (194)
83 2pny_A Isopentenyl-diphosphate 99.0 1.2E-09 4.3E-14 107.0 10.1 126 342-474 79-226 (246)
84 3kvh_A Protein syndesmos; NUDT 98.9 3.1E-10 1.1E-14 106.2 4.0 67 346-427 45-113 (214)
85 3o6z_A GDP-mannose pyrophospha 98.9 4.1E-10 1.4E-14 105.7 4.8 104 343-458 56-166 (191)
86 1g0s_A Hypothetical 23.7 kDa p 98.9 6.9E-10 2.4E-14 105.7 6.0 107 343-458 68-179 (209)
87 2fml_A MUTT/nudix family prote 98.9 9.5E-09 3.3E-13 102.0 12.2 119 344-476 55-198 (273)
88 2dsc_A ADP-sugar pyrophosphata 98.9 4E-09 1.4E-13 100.4 8.1 103 345-458 77-183 (212)
89 3q91_A Uridine diphosphate glu 98.8 6.1E-09 2.1E-13 100.2 6.3 90 359-457 94-187 (218)
90 1q33_A Pyrophosphatase, ADP-ri 98.6 1.3E-07 4.4E-12 94.8 11.3 121 346-476 140-278 (292)
91 3qsj_A Nudix hydrolase; struct 98.6 1.3E-07 4.4E-12 91.9 10.8 127 345-475 24-211 (232)
92 2xsq_A U8 snoRNA-decapping enz 98.4 1.6E-07 5.5E-12 90.1 5.0 97 346-456 66-171 (217)
93 3dup_A MUTT/nudix family prote 98.2 2E-06 6.7E-11 86.6 8.4 128 346-485 134-273 (300)
94 3bho_A Cleavage and polyadenyl 98.2 3.8E-07 1.3E-11 86.2 2.8 40 345-392 73-112 (208)
95 3rh7_A Hypothetical oxidoreduc 98.2 2.9E-06 1E-10 86.1 8.8 109 342-486 191-301 (321)
96 2edu_A Kinesin-like protein KI 88.8 0.76 2.6E-05 37.8 6.0 60 148-214 31-90 (98)
97 2ihm_A POL MU, DNA polymerase 86.0 1.4 4.9E-05 44.9 7.4 59 157-217 25-85 (360)
98 2fmp_A DNA polymerase beta; nu 84.9 1.6 5.3E-05 44.2 7.0 60 157-217 20-81 (335)
99 1jms_A Terminal deoxynucleotid 84.4 1.7 5.8E-05 44.7 7.1 59 157-217 44-104 (381)
100 2duy_A Competence protein come 83.6 0.9 3.1E-05 35.3 3.6 53 149-212 19-71 (75)
101 2duy_A Competence protein come 83.5 0.58 2E-05 36.4 2.5 22 192-213 25-46 (75)
102 2bcq_A DNA polymerase lambda; 83.4 2 7E-05 43.3 7.1 55 158-213 22-76 (335)
103 3vdp_A Recombination protein R 80.9 0.88 3E-05 42.9 3.0 28 191-218 23-50 (212)
104 2ofk_A 3-methyladenine DNA gly 80.1 4.5 0.00015 37.3 7.5 71 114-184 29-104 (183)
105 2i5h_A Hypothetical protein AF 80.0 0.95 3.3E-05 42.4 2.9 47 187-237 125-171 (205)
106 1x2i_A HEF helicase/nuclease; 79.5 1.1 3.7E-05 34.4 2.7 23 191-213 43-65 (75)
107 1vdd_A Recombination protein R 78.3 1.2 4E-05 42.5 3.0 28 191-218 9-36 (228)
108 2jg6_A DNA-3-methyladenine gly 78.2 5.1 0.00018 37.0 7.2 71 114-184 29-104 (186)
109 2a1j_A DNA repair endonuclease 77.9 4.7 0.00016 30.4 5.8 40 137-179 16-55 (63)
110 1s5l_U Photosystem II 12 kDa e 77.9 1 3.5E-05 39.4 2.3 20 191-210 86-105 (134)
111 1z00_A DNA excision repair pro 77.7 1.5 5.1E-05 35.2 3.1 24 191-214 48-71 (89)
112 3arc_U Photosystem II 12 kDa e 77.5 1.1 3.8E-05 37.1 2.3 22 191-212 23-44 (97)
113 1s5l_U Photosystem II 12 kDa e 77.1 1.3 4.6E-05 38.8 2.8 22 191-212 60-81 (134)
114 2ztd_A Holliday junction ATP-d 77.1 1.4 4.7E-05 41.8 3.1 28 190-217 119-146 (212)
115 1kft_A UVRC, excinuclease ABC 76.1 1.2 4.1E-05 34.9 2.0 21 192-212 54-74 (78)
116 4glx_A DNA ligase; inhibitor, 74.2 2.7 9.1E-05 45.7 4.8 36 192-234 542-577 (586)
117 2a1j_B DNA excision repair pro 73.7 1.5 5.2E-05 35.4 2.1 24 191-214 61-84 (91)
118 1z00_B DNA repair endonuclease 72.7 7.1 0.00024 31.3 5.9 40 137-179 30-69 (84)
119 2ztd_A Holliday junction ATP-d 71.4 1.8 6.3E-05 40.9 2.4 37 194-231 88-127 (212)
120 2a1j_A DNA repair endonuclease 71.1 2.3 7.9E-05 32.1 2.5 20 193-212 3-22 (63)
121 3arc_U Photosystem II 12 kDa e 70.2 1.7 5.7E-05 36.0 1.6 57 145-212 14-70 (97)
122 2edu_A Kinesin-like protein KI 70.0 2.3 7.8E-05 34.9 2.4 22 192-213 38-59 (98)
123 2kp7_A Crossover junction endo 69.6 5.3 0.00018 32.3 4.5 41 171-212 36-76 (87)
124 2csb_A Topoisomerase V, TOP61; 67.5 22 0.00074 34.7 9.0 64 139-218 368-434 (519)
125 1ixr_A Holliday junction DNA h 65.2 3.4 0.00012 38.3 2.8 27 191-217 104-130 (191)
126 1cuk_A RUVA protein; DNA repai 64.0 3.6 0.00012 38.5 2.8 24 191-214 105-128 (203)
127 1z00_B DNA repair endonuclease 64.0 3.8 0.00013 32.9 2.5 22 192-213 16-37 (84)
128 1dgs_A DNA ligase; AMP complex 63.4 4.1 0.00014 44.9 3.5 22 192-213 537-558 (667)
129 1ixr_A Holliday junction DNA h 60.2 4.3 0.00015 37.6 2.6 35 194-229 72-109 (191)
130 1kft_A UVRC, excinuclease ABC 58.6 4.2 0.00014 31.6 1.9 24 193-217 23-46 (78)
131 2fmp_A DNA polymerase beta; nu 56.3 4.4 0.00015 40.8 2.0 24 190-213 94-117 (335)
132 2owo_A DNA ligase; protein-DNA 54.8 19 0.00064 39.7 6.8 30 146-178 469-499 (671)
133 1z00_A DNA excision repair pro 54.3 7.2 0.00024 31.0 2.6 24 193-217 18-41 (89)
134 1cuk_A RUVA protein; DNA repai 53.6 6 0.00021 37.0 2.4 35 194-229 73-110 (203)
135 2bgw_A XPF endonuclease; hydro 51.3 11 0.00036 35.2 3.7 23 191-213 191-213 (219)
136 1x2i_A HEF helicase/nuclease; 50.8 7.5 0.00026 29.4 2.1 23 194-217 14-36 (75)
137 2a1j_B DNA excision repair pro 50.3 8.1 0.00028 30.9 2.3 24 193-217 31-54 (91)
138 4gfj_A Topoisomerase V; helix- 49.0 21 0.00071 37.1 5.5 53 121-178 512-568 (685)
139 2rhf_A DNA helicase RECQ; HRDC 48.2 19 0.00065 27.8 4.2 30 172-208 32-61 (77)
140 1wcn_A Transcription elongatio 47.1 16 0.00056 28.0 3.5 39 140-181 22-62 (70)
141 3sgi_A DNA ligase; HET: DNA AM 47.1 4 0.00014 44.5 0.0 23 192-214 559-581 (615)
142 1vq8_Y 50S ribosomal protein L 44.1 4.8 0.00016 38.7 0.0 25 193-217 14-38 (241)
143 2kv2_A Bloom syndrome protein; 43.7 21 0.00072 28.2 3.8 31 171-208 33-63 (85)
144 3bqs_A Uncharacterized protein 43.7 22 0.00076 28.9 4.0 44 193-236 3-46 (93)
145 3c1y_A DNA integrity scanning 42.2 11 0.00036 38.7 2.2 34 178-211 327-364 (377)
146 1wud_A ATP-dependent DNA helic 41.9 26 0.00089 27.9 4.1 30 172-208 40-69 (89)
147 2bcq_A DNA polymerase lambda; 41.5 15 0.0005 37.0 3.1 20 194-213 96-115 (335)
148 2w9m_A Polymerase X; SAXS, DNA 41.3 9.9 0.00034 41.0 1.9 28 189-216 92-119 (578)
149 3im1_A Protein SNU246, PRE-mRN 40.3 34 0.0012 33.8 5.6 44 164-211 131-174 (328)
150 2e1f_A Werner syndrome ATP-dep 39.6 26 0.00087 29.0 3.8 31 171-208 41-71 (103)
151 2ihm_A POL MU, DNA polymerase 38.5 8.9 0.0003 38.9 1.0 26 188-213 96-121 (360)
152 3c1y_A DNA integrity scanning 37.9 23 0.0008 36.1 4.0 45 138-184 328-372 (377)
153 3mab_A Uncharacterized protein 36.1 30 0.001 28.2 3.6 27 192-218 2-28 (93)
154 3r8n_M 30S ribosomal protein S 36.0 20 0.00067 30.5 2.6 22 193-214 15-36 (114)
155 2rrd_A BLM HRDC domain, HRDC d 35.3 32 0.0011 28.2 3.8 31 171-208 48-78 (101)
156 3b0x_A DNA polymerase beta fam 35.3 14 0.00047 39.8 1.9 25 189-213 88-112 (575)
157 1jms_A Terminal deoxynucleotid 34.1 12 0.00039 38.4 1.0 26 188-213 115-140 (381)
158 2va8_A SSO2462, SKI2-type heli 33.4 2.9E+02 0.0097 29.8 12.2 66 164-233 630-695 (715)
159 3u5c_S 40S ribosomal protein S 32.7 24 0.00081 31.3 2.6 22 193-214 29-50 (146)
160 3i0w_A 8-oxoguanine-DNA-glycos 31.3 44 0.0015 32.6 4.7 111 17-168 101-221 (290)
161 2dgz_A Werner syndrome protein 31.2 25 0.00087 29.6 2.5 28 171-205 48-75 (113)
162 2q0z_X Protein Pro2281; SEC63, 31.0 74 0.0025 31.5 6.4 45 164-211 134-178 (339)
163 1u9l_A Transcription elongatio 29.3 47 0.0016 25.5 3.5 39 144-185 26-65 (70)
164 3j20_O 30S ribosomal protein S 28.2 27 0.00094 30.9 2.3 23 193-215 22-44 (148)
165 3iz6_M 40S ribosomal protein S 28.1 30 0.001 30.8 2.5 28 188-215 19-49 (152)
166 2xzm_M RPS18E; ribosome, trans 27.9 29 0.001 31.0 2.4 22 193-214 29-50 (155)
167 3b0x_A DNA polymerase beta fam 26.8 59 0.002 34.8 5.1 58 157-214 11-73 (575)
168 1vq8_Y 50S ribosomal protein L 25.5 15 0.0005 35.3 0.0 48 163-213 20-67 (241)
169 1z3e_B DNA-directed RNA polyme 24.9 39 0.0013 26.2 2.4 47 164-211 12-58 (73)
170 3c65_A Uvrabc system protein C 21.9 19 0.00065 34.2 0.0 19 192-211 203-221 (226)
171 1exn_A 5'-exonuclease, 5'-nucl 20.3 45 0.0015 32.8 2.3 17 196-212 205-221 (290)
172 2vqe_M 30S ribosomal protein S 20.1 33 0.0011 29.6 1.1 27 188-214 8-37 (126)
173 2nrt_A Uvrabc system protein C 20.0 48 0.0016 31.3 2.3 18 196-213 170-187 (220)
No 1
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=100.00 E-value=1.3e-77 Score=624.34 Aligned_cols=348 Identities=36% Similarity=0.671 Sum_probs=322.8
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHH
Q 010868 82 KIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNE 161 (498)
Q Consensus 82 ~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel~~ 161 (498)
.|.+.|++||+.++|++|||.. +|||++||++||+|||++++|.+++.+|+++|||+++|+++++++|.+
T Consensus 15 ~~~~~l~~w~~~~~r~lpw~~~----------~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~a~~~~l~~ 84 (369)
T 3fsp_A 15 EFQRDLLDWFARERRDLPWRKD----------RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLK 84 (369)
T ss_dssp HHHHHHHHHHHHHCCCCGGGSC----------CCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCC----------CChHHHHHHHHHhccCcHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHH
Confidence 5999999999999999999975 689999999999999999999999999999999999999999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhcccCCC
Q 010868 162 MWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANP 240 (498)
Q Consensus 162 ~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i~~~~ 240 (498)
+|+++|||+||++|+++|+.++++ +|++|+++++|++|||||+|||++||+|+||+|+++||+||+||+.|+|+++.++
T Consensus 85 ~i~~~G~~~ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rl~~~~~~~ 164 (369)
T 3fsp_A 85 AWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDI 164 (369)
T ss_dssp TTTTSSCTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTTCCSCT
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHHCCCCcccccHHHHHHHHHHcCcccCc
Confidence 999999999999999999999997 8899999999999999999999999999999999999999999999999998766
Q ss_pred CChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCCCCCCCCCcccChhhhcCCCCCccceecccccccccccc
Q 010868 241 KDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQR 320 (498)
Q Consensus 241 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~CpL~~~C~~~~~~~~~~~~~~~~~p~k~~K~k~k 320 (498)
....+.+.+++.++.++|.+.|++||++||+||+.+|++++|+|+.|||++.|.+++.+. +..||+|++|++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~------~~~~PvK~~kk~~~ 238 (369)
T 3fsp_A 165 AKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGV------AEELPVKMKKTAVK 238 (369)
T ss_dssp TSHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTC------GGGCSCCCCCCCCE
T ss_pred cccchHHHHHHHHHHhCChhhHHHHHHHHHHHHHHhcCCCCCCCCCCCChhhhHHHhcCC------cccCCccccccCcc
Confidence 556678899999999999999999999999999999999999999999999999999885 68999999988888
Q ss_pred eeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCccc
Q 010868 321 HDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSI 400 (498)
Q Consensus 321 ~~~v~~~II~~~~~~~~~~~~~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~ 400 (498)
.+.++++||. +.+|+||++||+++|+|+|+||||||++|.| ++ ++|+.||+.||+|+++.
T Consensus 239 ~~~~~~~vi~-----------~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~---~~al~REl~EE~Gl~v~----- 298 (369)
T 3fsp_A 239 QVPLAVAVLA-----------DDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DG---KEKLEQMVGEQYGLQVE----- 298 (369)
T ss_dssp EEEEEEEEEE-----------CSSSEEEEEECCSSSTTTTCEECCEEECSSS-CT---HHHHHHHHTTSSSCCEE-----
T ss_pred eEEEEEEEEE-----------eCCCEEEEEECCCCCCcCCcccCCCcccCCC-Cc---HHHHHHHHHHHhCCcee-----
Confidence 8888888775 6789999999999999999999999999988 66 79999999999999986
Q ss_pred ccccccccEEEEcCCeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhh
Q 010868 401 ILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 401 ~~~~~l~~v~H~fsH~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~ 476 (498)
..+.++.+.|.|+|+++++++|.+.+ .++ ..++.+++|++++++.+++||++++++++.+.+...
T Consensus 299 -~~~~l~~~~h~~~h~~~~~~~~~~~~--~~~--------~~e~~~~~Wv~~~el~~~~l~~~~~~il~~l~~~~~ 363 (369)
T 3fsp_A 299 -LTEPIVSFEHAFSHLVWQLTVFPGRL--VHG--------GPVEEPYRLAPEDELKAYAFPVSHQRVWREYKEWAS 363 (369)
T ss_dssp -ECCCCCEEEEECSSEEEEEEEEEEEE--CCS--------SCCCTTEEEEEGGGGGGSCCCHHHHHHHHHHHHHTC
T ss_pred -eecccccEEEEcceEEEEEEEEEEEE--cCC--------CCCccccEEeeHHHhhhCCCCHHHHHHHHHHHHHhc
Confidence 66788999999999999999998864 331 246788999999999999999999999999887643
No 2
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-55 Score=441.14 Aligned_cols=225 Identities=58% Similarity=1.048 Sum_probs=205.8
Q ss_pred hc-CHHHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHH
Q 010868 74 LF-SEKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLA 152 (498)
Q Consensus 74 ~~-~~~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La 152 (498)
+| +++++..|++.|++||+.++|+||||.+.+ ...+..+|||++||++||+|||++++|.+++.+|+++|||+++|+
T Consensus 8 ~~~~~~~~~~~~~~ll~Wy~~~~R~lPWR~~~~--~~~d~~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fptpe~La 85 (287)
T 3n5n_X 8 LFRDVAEVTAFRGSLLSWYDQEKRDLPWRRRAE--DEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLA 85 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH--HCCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCSHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCCCCcCcCc--cccCCCCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCCCHHHHH
Confidence 44 447788999999999999999999998421 011223689999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhc-CCCCcHHHHHHHHHHhcCCcccccccchhhHH
Q 010868 153 KASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRK-VPGIGNYTAGAIASIAFKEVVPVVDGNVIRVL 230 (498)
Q Consensus 153 ~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~-LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl 230 (498)
+++.++|+++|+++|||+||++|+++|+.++++ +|.+|+++++|++ |||||+|||++||+|+||+|+++||+||+||+
T Consensus 86 ~a~~eel~~~ir~lG~~~KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~~VDt~V~Rv~ 165 (287)
T 3n5n_X 86 SASLEEVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVL 165 (287)
T ss_dssp TSCHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCCCCCCCHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 999999999999999999999999999999997 8899999999999 99999999999999999999999999999999
Q ss_pred HhhhcccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCCCCCCCCCcccChhhhcCC
Q 010868 231 ARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSK 300 (498)
Q Consensus 231 ~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~CpL~~~C~~~~~~~ 300 (498)
.|+|+++.++....+.+.+|.+++.++|.+.|++||++||+||+.+|++++|+|+.|||++.|.+++.+.
T Consensus 166 ~Rlg~i~~~~~~~~~~~~l~~~a~~~lp~~~~~~~h~~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~~~ 235 (287)
T 3n5n_X 166 CRVRAIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVE 235 (287)
T ss_dssp HHHTTCCSCTTSHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHH
T ss_pred HHhCCCCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhHHHcCCCCCCCCCCCChhhhHHHHhcc
Confidence 9999987655555667888988999999999999999999999999999999999999999999998763
No 3
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=100.00 E-value=1.5e-52 Score=408.01 Aligned_cols=219 Identities=44% Similarity=0.817 Sum_probs=204.6
Q ss_pred HHHHHHHHHHhhCCC-CCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHH
Q 010868 82 KIRQSLLQWYDKNQR-ELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVN 160 (498)
Q Consensus 82 ~~~~~L~~wy~~~~r-~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel~ 160 (498)
.|.+.|.+||+.+++ ++|||.. .|||++||++||+|||++++|.+++.+|++.|||+++|+++++++|.
T Consensus 5 ~~~~~l~~~~~~~g~~~l~w~~~----------~~pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~pt~~~la~~~~~~l~ 74 (225)
T 1kg2_A 5 QFSAQVLDWYDKYGRKTLPWQID----------KTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVL 74 (225)
T ss_dssp HHHHHHHHHHHHHCCCCSGGGSS----------CCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCSSHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCC----------CCHHHHHHHHHHHCcCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHH
Confidence 689999999999997 8999974 58999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhcccCC
Q 010868 161 EMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISAN 239 (498)
Q Consensus 161 ~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i~~~ 239 (498)
++|+++|||+||++|+++|+.++++ +|++|+++++|++|||||+|||++||+|+||+|+++||+||+|++.|+|+++..
T Consensus 75 ~~i~~~G~~~kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~~~~~~~vD~~v~Rv~~rl~~~~~~ 154 (225)
T 1kg2_A 75 HLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGW 154 (225)
T ss_dssp HHHTTSCCTHHHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCSC
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHHhCCCCcceeCHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999997 789999999999999999999999999999999999999999999999988755
Q ss_pred CCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCCCCCCCCCcccChhhhcCCCCCccceecccccccc
Q 010868 240 PKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLK 316 (498)
Q Consensus 240 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~CpL~~~C~~~~~~~~~~~~~~~~~p~k~~K 316 (498)
+....+.++++++++.++|.+.|++||++||+||+.+|++++|+|+.|||++.|.+++.+. +..||+|++|
T Consensus 155 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~------~~~~p~~~~~ 225 (225)
T 1kg2_A 155 PGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNS------WALYPGKKPK 225 (225)
T ss_dssp TTSHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTC------GGGSSCCCC-
T ss_pred CCccchHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhCHHHHcCC------cccCCCCCCC
Confidence 5445567889999999999999999999999999999999999999999999999999885 5789987543
No 4
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=100.00 E-value=1.3e-50 Score=393.46 Aligned_cols=212 Identities=28% Similarity=0.596 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCH
Q 010868 77 EKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASL 156 (498)
Q Consensus 77 ~~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~ 156 (498)
+.++..|++.|..||+.+++.+||+.. .|||++||++||+|||++++|.+++.+|++.||||++|+++++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~pw~~~----------~~pfe~lv~~IlsQqts~~~~~~~~~~l~~~fptp~~la~a~~ 75 (221)
T 1kea_A 6 NKKRKVFVSTILTFWNTDRRDFPWRHT----------RDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPK 75 (221)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCGGGGC----------CCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhCcCCCC----------CCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCCHHHHHCCCH
Confidence 456778999999999999999999974 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhh
Q 010868 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLK 234 (498)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~ 234 (498)
++|.++|+++|||+ ||++|+++|+.++++ +|++|+++++|++|||||+|||++|++|+||+|+++||+||+|++.|++
T Consensus 76 e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~~~~~~~~~vD~~v~Rv~~rl~ 155 (221)
T 1kea_A 76 SEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYF 155 (221)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhCCCCcHHHHHHHHHHhcCCCcceecHHHHHHHHHHh
Confidence 99999999999998 999999999999997 8899999999999999999999999999999999999999999999996
Q ss_pred cccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCCCCCCCCCcccChhhhcC
Q 010868 235 AISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMS 299 (498)
Q Consensus 235 ~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~CpL~~~C~~~~~~ 299 (498)
++...+.... .+.++++++.++|.+.|++||++||+||+.+|++++|+|+.|||++.|.++..+
T Consensus 156 gl~~~~~~~~-~~~l~~~ae~~~P~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 219 (221)
T 1kea_A 156 GGSYENLNYN-HKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKC 219 (221)
T ss_dssp CGGGTTCCTT-SHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHTC
T ss_pred CCCCCCCcHH-HHHHHHHHHHhCChhhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhchhhhcC
Confidence 5544333323 567888999999999999999999999999999999999999999999998765
No 5
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00 E-value=5.5e-47 Score=368.98 Aligned_cols=204 Identities=23% Similarity=0.369 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHH
Q 010868 78 KEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLE 157 (498)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~e 157 (498)
+.+..+.+.|.+||+...+.++|+ |||++||++||+|||++++|..++.+|++.||||++|++++++
T Consensus 8 ~~~~~i~~~L~~~y~~~~~~l~~~-------------~pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fpt~~~la~a~~~ 74 (226)
T 1orn_A 8 QQIRYCLDEMAKMFPDAHCELVHR-------------NPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLE 74 (226)
T ss_dssp HHHHHHHHHHHHHCTTCCCCSCCS-------------SHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHcCccCCCCCCC-------------CHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCCCHHHHHcCCHH
Confidence 566789999999999877666665 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhc
Q 010868 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKA 235 (498)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~ 235 (498)
+|+++|+++|||+ ||++|+++|+.++++ +|++|+++++|++|||||+|||++|++|+||+|+++||+||.|++.|+|+
T Consensus 75 ~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~g~~~~~vD~~v~Rv~~rlg~ 154 (226)
T 1orn_A 75 ELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGF 154 (226)
T ss_dssp HHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTS
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHHCCCceeeeCHHHHHHHHHhCC
Confidence 9999999999998 999999999999987 78999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCCCCCCCCCcccChhhhc
Q 010868 236 ISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSM 298 (498)
Q Consensus 236 i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~CpL~~~C~~~~~ 298 (498)
++... +..++++.++.++|.+.|+++|++||+||+.+|++++|+|+.|||++.|.++..
T Consensus 155 ~~~~~----~~~~~~~~l~~~~p~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~ 213 (226)
T 1orn_A 155 CRWDD----SVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKK 213 (226)
T ss_dssp SCTTC----CHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHH
T ss_pred CCCCC----CHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhhhhHhh
Confidence 65321 234567778889999999999999999999999999999999999999998764
No 6
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=100.00 E-value=7.4e-47 Score=364.52 Aligned_cols=202 Identities=19% Similarity=0.289 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHH
Q 010868 78 KEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLE 157 (498)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~e 157 (498)
+++..+.+.|.+||+...+.+||+ |||++||++||+|||++++|..++.+|++.||||++|++++++
T Consensus 4 ~~~~~i~~~L~~~~~~~~~~~~~~-------------~pfe~lv~~Il~qqts~~~v~~~~~~l~~~fpt~~~la~a~~~ 70 (211)
T 2abk_A 4 AKRLEILTRLRENNPHPTTELNFS-------------SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVE 70 (211)
T ss_dssp HHHHHHHHHHHHHCSSCCCSSCCS-------------SHHHHHHHHHHTTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCcCCCCC-------------CHHHHHHHHHHhCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHH
Confidence 456689999999998776555544 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhc
Q 010868 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKA 235 (498)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~ 235 (498)
+|.++|+++|||+ ||++|+++|+.++++ +|++|+++++|++|||||+|||++|++|+||+|+++||+||.|++.|+|+
T Consensus 71 ~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rlgl 150 (211)
T 2abk_A 71 GVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQF 150 (211)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHHCCCCcCCcCHHHHHHHHHhCC
Confidence 9999999999998 999999999999987 78999999999999999999999999999999999999999999999986
Q ss_pred ccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCCCCCCCCCcccChhhh
Q 010868 236 ISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYS 297 (498)
Q Consensus 236 i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~CpL~~~C~~~~ 297 (498)
.+. + +.+++++.++.++|.+.+++||++||+||+.+|++++|+|+.|||++.|.++.
T Consensus 151 ~~~-~----~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~ 207 (211)
T 2abk_A 151 APG-K----NVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKE 207 (211)
T ss_dssp SCC-S----SHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCTT
T ss_pred CCC-C----CHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHCCCCCCCCCCCCChhhCCCcC
Confidence 431 1 34567778889999999999999999999999999999999999999999763
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=100.00 E-value=1.9e-35 Score=286.19 Aligned_cols=178 Identities=19% Similarity=0.221 Sum_probs=155.4
Q ss_pred HHHHHHHHHH-HhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHh-CCC------HHHHH
Q 010868 81 KKIRQSLLQW-YDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK-WPT------IHHLA 152 (498)
Q Consensus 81 ~~~~~~L~~w-y~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~-fPt------~~~La 152 (498)
..+.++|.+| |+.+++.+ |+.. .|||++||++||+|||++++|.+++.+|+++ ||| |++|+
T Consensus 5 ~~i~~~L~~~~~~~~~~~~-~~~~----------~dpfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la 73 (218)
T 1pu6_A 5 FEILKALKSLDLLKNAPAW-WWPN----------ALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIA 73 (218)
T ss_dssp HHHHHHHHTTTTTTTSCTT-SSTT----------TTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHH
T ss_pred HHHHHHHHHccCcccCCCc-CCCC----------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHH
Confidence 3688999999 99998865 5542 5899999999999999999999999999999 999 99999
Q ss_pred hCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHc-CC----CCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccch
Q 010868 153 KASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAE-GD----GFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNV 226 (498)
Q Consensus 153 ~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g----~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v 226 (498)
+++.++|.++|+++|||+ ||++|+++|+.+.++ +| ++|+++++|++|||||+|||++||+|++|+|+++||+||
T Consensus 74 ~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~~~~vD~~v 153 (218)
T 1pu6_A 74 YIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYS 153 (218)
T ss_dssp HSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHH
T ss_pred hCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHHCCCCccccCHHH
Confidence 999999999999999999 999999999999987 56 678999999999999999999999999999999999999
Q ss_pred hhHHHhhhcccCCCCChHHHHHHHHHHHh----hcC------------CCChHHHHHHHHHhcch
Q 010868 227 IRVLARLKAISANPKDTSTVKNFWKLATQ----LVD------------SCRPGDFNQSLMELGAV 275 (498)
Q Consensus 227 ~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~----l~~------------~~~~~~~~~~l~~~G~~ 275 (498)
+|++.|+|+.. + ++ .++.+.++. .+| .+.+.+||..||+||+.
T Consensus 154 ~Ri~~rlg~~~--~-~~---~~~~~~l~~~~p~~lp~~~~~~~~~~~~~~~~~~~h~liv~~Gk~ 212 (218)
T 1pu6_A 154 YLFLKKLGIEI--E-DY---DELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQ 212 (218)
T ss_dssp HHHHHHTTCCC--C-SH---HHHHHHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCC--C-CH---HHHHHHHHHhhhhcCcchhhhcccccchHHHHHHHHHHHHHHhhh
Confidence 99999997652 2 22 233333333 444 34589999999999997
No 8
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.97 E-value=6.2e-32 Score=249.33 Aligned_cols=132 Identities=18% Similarity=0.242 Sum_probs=120.4
Q ss_pred CCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHH
Q 010868 99 PWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLE 177 (498)
Q Consensus 99 pwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~ 177 (498)
|++.+. +..+|...+|||++|||+||+|||++++|.+++.+|+++|||+++||+|++++|+++|+++|||+ ||++|++
T Consensus 15 pp~sp~-~l~qE~~~~dP~~vLVs~ILsqQT~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~ 93 (161)
T 4e9f_A 15 PPRSPF-NLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVK 93 (161)
T ss_dssp CCCCTT-CCTHHHHTTSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred CCCCCc-chhhhhhcCChHHHHHHHHHHhhCcHHHHHHHHHHHHHHCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHH
Confidence 555543 44567778999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHHhcCC--cccccccchhhHHHhhhccc
Q 010868 178 GAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKE--VVPVVDGNVIRVLARLKAIS 237 (498)
Q Consensus 178 ~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~--p~~~VD~~v~Rvl~Rl~~i~ 237 (498)
+|+.+ +|+++++|++|||||+||||+|++||+|. +++++|+|++|++.+++...
T Consensus 94 ~a~~~------vp~~~~~L~~LpGVG~yTAdav~~F~~~e~~~V~p~D~~l~r~l~wl~~~~ 149 (161)
T 4e9f_A 94 FSDEY------LTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENH 149 (161)
T ss_dssp HHHHH------HHSCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHHHHTC
T ss_pred HhCCc------CCCChhhhhcCCCchHHHHHHHHHHHCCCCCCCCCCcHHHHHHHHHHHcCc
Confidence 99865 57788999999999999999999999995 78999999999999987543
No 9
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.95 E-value=1.8e-29 Score=242.49 Aligned_cols=168 Identities=12% Similarity=0.158 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHH
Q 010868 78 KEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLE 157 (498)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~e 157 (498)
+++..+.+.+.+-|+ ..||+.. .|||++||++||+|||++++|.+++.+| ++.|+.++++
T Consensus 9 ~~~~~~v~~~~~~f~----~~~~~~~----------~~~fe~Lv~~ILsqqts~~~~~~~~~~L------~~~l~~~~~e 68 (207)
T 3fhg_A 9 PKVRARVLERVDEFR----LNNLSNE----------EVWFRELTLCLLTANSSFISAYQALNCL------GQKIYYANEE 68 (207)
T ss_dssp HHHHHHHHHHHHHHH----HHHTSCH----------HHHHHHHHHHHHHTTSCHHHHHHHHHHH------GGGGGTCCHH
T ss_pred HHHHHHHHHHHHHHh----hccCCCc----------CCHHHHHHHHHHcCCCCHHHHHHHHHHH------HHHHHcCCHH
Confidence 344444444444443 5689874 5899999999999999999999999998 4889999999
Q ss_pred HHHHHHhccC--cHH-HHHHHHHHHHHHHH-------c-CCCCC-CchhhhhcCCCCcHHHHHHHHHH-hcCCccccccc
Q 010868 158 EVNEMWAGLG--YYR-RARFLLEGAKMIVA-------E-GDGFP-NTVSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDG 224 (498)
Q Consensus 158 el~~~i~~lG--~~~-RA~~L~~~a~~i~~-------~-~g~~p-~~~~~L~~LpGIG~~TA~~il~~-a~~~p~~~VD~ 224 (498)
+|.++|+++| ||+ ||++|+++|+.+.+ . +|..| +++++|++|||||+|||++||+| ++ .++++||+
T Consensus 69 ~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~-~~~~~vD~ 147 (207)
T 3fhg_A 69 EIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGY-FDLAIIDR 147 (207)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTC-CSSCCCCH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CCcceecH
Confidence 9999999665 898 99999999995543 2 33456 78999999999999999999998 67 78999999
Q ss_pred chhhHHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccC
Q 010868 225 NVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTP 279 (498)
Q Consensus 225 ~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~ 279 (498)
||+|++.|+|+++....+ .+++..+.++|..|++||+.+|.+
T Consensus 148 ~v~Ri~~rlg~~~~~~~k-------------~~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 148 HIIDFMRRIGAIGETNVK-------------QLSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp HHHHHHHHTTSSCCCCCS-------------CCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCCccccc-------------cCCHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999988642111 123445678899999999988865
No 10
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.95 E-value=1.8e-28 Score=235.93 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=128.4
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccC--cHH-HHHHHHHHHH--HHHHc-CC
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLG--YYR-RARFLLEGAK--MIVAE-GD 187 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG--~~~-RA~~L~~~a~--~i~~~-~g 187 (498)
+|||++||++||+|||++++|..++.+|+ +.|+++++++|+++|+++| ||+ ||++|+++|+ .+.+. +|
T Consensus 42 ~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l~~~~~~ 115 (214)
T 3fhf_A 42 EEWFKELCFCILTANFTAEGGIRIQKEIG------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVES 115 (214)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHT------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHHHHHHH
T ss_pred CChHHHHHHHHHcCCCCHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 57999999999999999999999999996 7799999999999999999 999 9999999999 77665 33
Q ss_pred --CCCCchhhhh-cCCCCcHHHHHHHHHHhcCCcccc-cccchhhHHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChH
Q 010868 188 --GFPNTVSDLR-KVPGIGNYTAGAIASIAFKEVVPV-VDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPG 263 (498)
Q Consensus 188 --~~p~~~~~L~-~LpGIG~~TA~~il~~a~~~p~~~-VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~ 263 (498)
++|+++++|+ +|||||+|||++||+++ |.+.++ ||+||+|++.|+|+++..+ ..+++..|.
T Consensus 116 ~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~~~~~vVDthv~Ri~~RlG~~~~~~--------------k~lt~~~y~ 180 (214)
T 3fhf_A 116 FENEKVAREFLVRNIKGIGYKEASHFLRNV-GYDDVAIIDRHILRELYENNYIDEIP--------------KTLSRRKYL 180 (214)
T ss_dssp SSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TCCSCCCCCHHHHHHHHHTTSSSSCC--------------SSCCHHHHH
T ss_pred cCCcHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCCcccCcHHHHHHHHHcCCCCCCC--------------CcCCHHHHH
Confidence 6789999999 99999999999999998 556555 9999999999999987422 124455688
Q ss_pred HHHHHHHHhcchhccC
Q 010868 264 DFNQSLMELGAVICTP 279 (498)
Q Consensus 264 ~~~~~l~~~G~~iC~~ 279 (498)
++|..|++||+.+|.+
T Consensus 181 e~~~~l~~~g~~~g~~ 196 (214)
T 3fhf_A 181 EIENILRDIGEEVNLK 196 (214)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999999999986
No 11
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=99.94 E-value=8e-27 Score=227.56 Aligned_cols=154 Identities=14% Similarity=0.221 Sum_probs=128.1
Q ss_pred HHHHHHHhhCC-CCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHh------CCCHHHHHhCCHH
Q 010868 85 QSLLQWYDKNQ-RELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK------WPTIHHLAKASLE 157 (498)
Q Consensus 85 ~~L~~wy~~~~-r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~------fPt~~~La~a~~e 157 (498)
..|..++...+ ..+||+. .+|||++||++||+|||++++|..++.+|.++ ||||++|++++++
T Consensus 38 p~l~~li~~~~g~rl~~~~----------~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e 107 (232)
T 4b21_A 38 NKWSSLVKKVGPCTLTPHP----------EHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVE 107 (232)
T ss_dssp HHHHHHHHHHCSCCCCCCT----------TSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHH
T ss_pred HHHHHHHHHcCCCCCCCCC----------CCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHH
Confidence 34555666654 3566654 25899999999999999999999999999998 8999999999999
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCC-----------CchhhhhcCCCCcHHHHHHHHHHhcCCc-cccc-c
Q 010868 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFP-----------NTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVV-D 223 (498)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p-----------~~~~~L~~LpGIG~~TA~~il~~a~~~p-~~~V-D 223 (498)
+| +++||++ ||++|+++|+.+.++ .+| +.+++|++|||||+|||++|++|++|+| +++| |
T Consensus 108 ~L----r~~Gl~~~Ka~~l~~~A~~~~~g--~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D 181 (232)
T 4b21_A 108 TL----HECGFSKLKSQEIHIVAEAALNK--QIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADD 181 (232)
T ss_dssp HH----HTTTCCHHHHHHHHHHHHHHHTT--CSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC
T ss_pred HH----HHcCCcHHHHHHHHHHHHHHHhC--CCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCcc
Confidence 85 7899988 899999999999873 443 5689999999999999999999999997 6777 9
Q ss_pred cchhhHHHhhhcccCCCCChHHHHHHHHHHHhhcC
Q 010868 224 GNVIRVLARLKAISANPKDTSTVKNFWKLATQLVD 258 (498)
Q Consensus 224 ~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~ 258 (498)
+||+|++.|+++.+..++ .+++.++++.+-|
T Consensus 182 ~~v~r~~~rl~~~~~~~~----~~~~~~~~e~w~P 212 (232)
T 4b21_A 182 STLKNEAKEFFGLSSKPQ----TEEVEKLTKPCKP 212 (232)
T ss_dssp HHHHHHHHHHTTCSSCCC----HHHHHHHTGGGTT
T ss_pred HHHHHHHHHHhCCCCCCC----HHHHHHHHHHccC
Confidence 999999999998765432 3456666665544
No 12
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=99.94 E-value=6.6e-27 Score=228.43 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=134.1
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhC----CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcC--
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW----PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEG-- 186 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~f----Pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~-- 186 (498)
.|||++||++||+|||++++|..++.+|+++| |||++|+++++++| +++||++ ||++|+++|+.+.++.
T Consensus 49 ~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~L----r~~G~~~~KA~~I~~~A~~i~~~~~~ 124 (233)
T 2h56_A 49 PNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEAL----RQAGVSKRKIEYIRHVCEHVESGRLD 124 (233)
T ss_dssp SCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHH----HHTTCCHHHHHHHHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 68999999999999999999999999999984 69999999999986 8999998 8999999999999862
Q ss_pred CC----CC--CchhhhhcCCCCcHHHHHHHHHHhcCCc-ccccccchhhHHHhhhcccCCCCChHHHHHHHHHHHhhcCC
Q 010868 187 DG----FP--NTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDS 259 (498)
Q Consensus 187 g~----~p--~~~~~L~~LpGIG~~TA~~il~~a~~~p-~~~VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~ 259 (498)
++ .| +++++|++|||||+|||++||+|+||+| +++||+|+.|++.|++..... ..+.+++++.++.+.|.
T Consensus 125 ~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvdd~~~r~~~~~~~~~~~---~~~~~~~~~~~e~~~P~ 201 (233)
T 2h56_A 125 FTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNGE---GDGKKLLIYHGKAWAPY 201 (233)
T ss_dssp HHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSSSC---SCHHHHHHHHHGGGTTC
T ss_pred HHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCchHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCcH
Confidence 22 26 7889999999999999999999999998 899999999999988764321 12455777888888888
Q ss_pred CChHHHHHHHHHhcchh
Q 010868 260 CRPGDFNQSLMELGAVI 276 (498)
Q Consensus 260 ~~~~~~~~~l~~~G~~i 276 (498)
..+..+|...++.|..-
T Consensus 202 ~~~a~~~lw~~~~~~~~ 218 (233)
T 2h56_A 202 ETVACLYLWKAAGTFAE 218 (233)
T ss_dssp HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhccccccc
Confidence 77888887788776644
No 13
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.93 E-value=2.7e-27 Score=228.71 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCC----CCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHh
Q 010868 78 KEVKKIRQSLLQWYDKNQREL----PWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAK 153 (498)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~l----pwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~ 153 (498)
.++..+.+.+..-+...-.++ ||+.. .|||++||++||+|||++++|.+++.+| |+.|+.
T Consensus 18 ~~~~~~~~~~~~~i~~r~~ef~~~~~~~~~----------~~~fe~Lv~~ILsqqts~~~~~~a~~~L------p~~l~~ 81 (219)
T 3n0u_A 18 KELERIREEAKPLVEQRFEEFKRLGEEGTE----------EDLFCELSFCVLTANWSAEGGIRAQKEI------GKGFVH 81 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHHTTTSCHHHHHHHHHHH------TTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCC----------CCHHHHHHHHHHhCCCCHHHHHHHHHHH------HHHHHc
Confidence 345555555555544332222 67753 5799999999999999999999999998 678999
Q ss_pred CCHHHHHHHHhccC--cHH-HHHHHHHHHHHH---HHc-CCCCCCchhhhh-cCCCCcHHHHHHHHHHhcCC-ccccccc
Q 010868 154 ASLEEVNEMWAGLG--YYR-RARFLLEGAKMI---VAE-GDGFPNTVSDLR-KVPGIGNYTAGAIASIAFKE-VVPVVDG 224 (498)
Q Consensus 154 a~~eel~~~i~~lG--~~~-RA~~L~~~a~~i---~~~-~g~~p~~~~~L~-~LpGIG~~TA~~il~~a~~~-p~~~VD~ 224 (498)
+++++|+++|+++| ||+ ||++|+++|+.+ .+. ++++|+++++|+ +|||||+|||++||++ +|. |+++||+
T Consensus 82 ~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~ig~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~-~g~~~~~~VDt 160 (219)
T 3n0u_A 82 LPLEELAEKLREVGHRYPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRN-TGVEDLAILDK 160 (219)
T ss_dssp CCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGTTTHHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHT-TTCCSCCCCCH
T ss_pred CCHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHH-cCCCCeeeecH
Confidence 99999999999999 898 999999999975 333 678899999999 9999999999999999 777 8999999
Q ss_pred chhhHHHhhhcccC
Q 010868 225 NVIRVLARLKAISA 238 (498)
Q Consensus 225 ~v~Rvl~Rl~~i~~ 238 (498)
||.|++.|+|+++.
T Consensus 161 hv~Ri~~rlg~~~~ 174 (219)
T 3n0u_A 161 HVLRLMKRHGLIQE 174 (219)
T ss_dssp HHHHHHHHTTSCSS
T ss_pred HHHHHHHHcCCCCc
Confidence 99999999999875
No 14
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=99.92 E-value=7e-25 Score=213.41 Aligned_cols=147 Identities=17% Similarity=0.195 Sum_probs=121.0
Q ss_pred ChHHHHHHHHHhhhccHHHHHHHHHHHHHhC------CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCC
Q 010868 115 RAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW------PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGD 187 (498)
Q Consensus 115 dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~f------Pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g 187 (498)
|||++||++||+|||+++++..++.+| ++| |||++|++++.++| +++||++ ||++|+++|+.+.+ |
T Consensus 49 d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~L----r~~G~~~rKa~~i~~~A~~~~~--g 121 (228)
T 3s6i_A 49 EPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIM----RACGFSARKIDSLKSIAEATIS--G 121 (228)
T ss_dssp CHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHH----HHHTCCHHHHHHHHHHHHHHHH--T
T ss_pred CHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHc--C
Confidence 899999999999999999999999999 775 99999999999985 8899998 79999999999996 4
Q ss_pred CCCC-----------chhhhhcCCCCcHHHHHHHHHHhcCCc-cccc-ccchhhHHHhhhcccCCCCChHHHHHHHHHHH
Q 010868 188 GFPN-----------TVSDLRKVPGIGNYTAGAIASIAFKEV-VPVV-DGNVIRVLARLKAISANPKDTSTVKNFWKLAT 254 (498)
Q Consensus 188 ~~p~-----------~~~~L~~LpGIG~~TA~~il~~a~~~p-~~~V-D~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~ 254 (498)
.+|+ .+++|++|||||+|||++||+|++|+| +++| |.|++|++.|+++.+..+ +.+.+.++++
T Consensus 122 ~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD~~v~r~~~~~~~~~~~~----~~~~~~~~~e 197 (228)
T 3s6i_A 122 LIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIP----TKMYVLKHSE 197 (228)
T ss_dssp SSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSCC----CHHHHHHHHG
T ss_pred CCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEecccHHHHHHHHHHhCCCCCC----CHHHHHHHHH
Confidence 5653 388999999999999999999999998 6777 578999999999876443 2345666666
Q ss_pred hhcCCCChHHHHHHHHHhcc
Q 010868 255 QLVDSCRPGDFNQSLMELGA 274 (498)
Q Consensus 255 ~l~~~~~~~~~~~~l~~~G~ 274 (498)
.+-|- -+...+.|+.+++
T Consensus 198 ~w~P~--r~~A~~yLw~~~~ 215 (228)
T 3s6i_A 198 ICAPF--RTAAAWYLWKTSK 215 (228)
T ss_dssp GGTTC--HHHHHHHHHHGGG
T ss_pred HhCCH--HHHHHHHHHHhCc
Confidence 66543 2333444554443
No 15
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=99.92 E-value=2.2e-25 Score=216.55 Aligned_cols=139 Identities=21% Similarity=0.229 Sum_probs=117.9
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCC--
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW--PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDG-- 188 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~f--Pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~-- 188 (498)
.|||++||++||+|||+++++..++.+|.++| |||++|+++++++| +++||++ ||++|+++|+.+.++..+
T Consensus 59 ~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~L----r~~G~~~~KA~~i~~lA~~~~~g~~~l~ 134 (225)
T 2yg9_A 59 PDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDL----RGVGLSWAKVRTVQAAAAAAVSGQIDFA 134 (225)
T ss_dssp SCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHH----HHTTCCHHHHHHHHHHHHHHHTTSSCGG
T ss_pred CCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHH----HHCCCcHHHHHHHHHHHHHHHhCCcCHH
Confidence 68999999999999999999999999999999 99999999999986 8899987 999999999999985221
Q ss_pred ----CCC--chhhhhcCCCCcHHHHHHHHHHhcCCc-cccc-ccchhhHHHhhhcccCCCCChHHHHHHHHHHHhhcCCC
Q 010868 189 ----FPN--TVSDLRKVPGIGNYTAGAIASIAFKEV-VPVV-DGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSC 260 (498)
Q Consensus 189 ----~p~--~~~~L~~LpGIG~~TA~~il~~a~~~p-~~~V-D~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~~~~l~~~~ 260 (498)
.|. .+++|++|||||+|||++||+|++|+| +++| |+||+|++.|+| . ++ .+.+.++.+.|..
T Consensus 135 ~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fpv~D~~v~r~~~~l~--~--~~------~~~~~~e~~~P~r 204 (225)
T 2yg9_A 135 HLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERLY--P--GE------DWRDVTARWAPYR 204 (225)
T ss_dssp GCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCCTTCHHHHHHHHHHS--T--TS------CHHHHHHHHTTCH
T ss_pred HHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHhC--C--HH------HHHHHHHHcCCHH
Confidence 243 389999999999999999999999998 7787 999999999998 1 21 2445566676654
Q ss_pred ChHHHH
Q 010868 261 RPGDFN 266 (498)
Q Consensus 261 ~~~~~~ 266 (498)
.+..+|
T Consensus 205 ~~a~~~ 210 (225)
T 2yg9_A 205 SLASRY 210 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 16
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=99.92 E-value=4e-25 Score=222.44 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=129.0
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHh--------------CCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHH
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK--------------WPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGA 179 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~--------------fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a 179 (498)
.|||++||++||+|||++++|..++.+|.++ ||||++|+++++++|.+ .++|| ||++|+++|
T Consensus 113 ~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~~--~g~g~--Ra~~I~~~A 188 (290)
T 3i0w_A 113 QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEE--CTAGF--RAKYLKDTV 188 (290)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHHH--TTCGG--GHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHHH--cCCch--HHHHHHHHH
Confidence 5899999999999999999999999999875 79999999999999876 35665 999999999
Q ss_pred HHHHHcC--------CCCCCchhhhhcCCCCcHHHHHHHHHHhcCCc-ccccccchhhHHHhhhcccCCCCChHHHHHHH
Q 010868 180 KMIVAEG--------DGFPNTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVVDGNVIRVLARLKAISANPKDTSTVKNFW 250 (498)
Q Consensus 180 ~~i~~~~--------g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p-~~~VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~ 250 (498)
+.+.++. .+.|+++++|++|||||+|||++|++|++|+| +++||+||+|++.|+|+.+. + +.+++.
T Consensus 189 ~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r~~~rl~~~~~-~----~~~~i~ 263 (290)
T 3i0w_A 189 DRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLYVAPD-V----SLKKIR 263 (290)
T ss_dssp HHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHTSCTT-C----CHHHHH
T ss_pred HHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHHHHHHhcCCCC-C----CHHHHH
Confidence 9999763 24567899999999999999999999999997 88899999999999998652 2 234566
Q ss_pred HHHHhhcCCCChHHHHHHHHHhcch
Q 010868 251 KLATQLVDSCRPGDFNQSLMELGAV 275 (498)
Q Consensus 251 ~~~~~l~~~~~~~~~~~~l~~~G~~ 275 (498)
+.+...+++ ..+..++.|+.+|+.
T Consensus 264 ~~~~~~~~p-~~~~A~~~Lw~~~R~ 287 (290)
T 3i0w_A 264 DFGREKFGS-LSGFAQQYLFYYARE 287 (290)
T ss_dssp HHHHHHHGG-GHHHHHHHHHHHHHH
T ss_pred HHHHhhcch-HHHHHHHHHHHhhhh
Confidence 666444443 567788899999886
No 17
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.90 E-value=2.6e-24 Score=195.03 Aligned_cols=141 Identities=31% Similarity=0.482 Sum_probs=116.7
Q ss_pred eecccccccccccceeeeeeEEEEEecCCCCCCcccC---CCeEEEEecCCCCCCCcccccCccccCCCCChhhHH-HHH
Q 010868 307 VTSYPMKVLKARQRHDVSAACVVEILGGNDESERTQP---DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRR-EAA 382 (498)
Q Consensus 307 ~~~~p~k~~K~k~k~~~v~~~II~~~~~~~~~~~~~~---~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~-~aL 382 (498)
++.||+|++|++.+....+++||. +. +|+||+.||+.+|+|+|+|+||||+++.+|+. + +|+
T Consensus 4 ~~~~Pvk~~k~~~~~~~~~~~vi~-----------~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~---~~~a~ 69 (155)
T 1x51_A 4 GSSGPRKASRKPPREESSATCVLE-----------QPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQL---QRKAL 69 (155)
T ss_dssp SCSCTTSSSCSCTTEEEEEEEEEE-----------EECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHH---HHHHH
T ss_pred hhhCCCcCCCCCCCeEEEEEEEEE-----------ecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCH---HHHHH
Confidence 578999998887777777777774 22 58999999999999999999999999988644 5 899
Q ss_pred HHHHHHhcC-CCCCCCcccccccccccEEEEcCCeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCC
Q 010868 383 ECFLKKSFN-LDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT 461 (498)
Q Consensus 383 ~rel~EElg-i~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp 461 (498)
.||+.||+| +++. ..+.++.+.|.|+|+++++++|.+.+ .++. +...++.+++|++.+++.+++||
T Consensus 70 ~REl~EE~g~l~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~e~~~~~W~~~~el~~~~~~ 136 (155)
T 1x51_A 70 LQELQRWAGPLPAT------HLRHLGEVVHTFSHIKLTYQVYGLAL--EGQT-----PVTTVPPGARWLTQEEFHTAAVS 136 (155)
T ss_dssp HHHHHHHSCCCCST------TCEECCCBCCBCSSCEEEEEEEEEEC--SSCC-----CCCCCCTTEEEEEHHHHHHSCCC
T ss_pred HHHHHHHhCCccee------eeeecceEEEecCCccEEEEEEEEEE--cCCC-----CCCCCCCccEEccHHHhhhcCCC
Confidence 999999999 8775 45678889999999999999998863 3221 22245678999999999999999
Q ss_pred hHHHHHHHHHHhh
Q 010868 462 SGVRKVYTMVQKF 474 (498)
Q Consensus 462 ~a~~kil~~L~~~ 474 (498)
++++++++.+...
T Consensus 137 ~~~~~~l~~~~~~ 149 (155)
T 1x51_A 137 TAMKKVFRVYQGQ 149 (155)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 18
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=99.90 E-value=1.9e-23 Score=215.87 Aligned_cols=120 Identities=20% Similarity=0.283 Sum_probs=107.9
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHH---------------hCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHH
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMT---------------KWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEG 178 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~---------------~fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~ 178 (498)
.|||++||++||+|||++++|..++.+|++ .||||++|++++.++ .|+.+||..||++|+++
T Consensus 150 ~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee---~Lr~~Gl~~RA~~I~~~ 226 (360)
T 2xhi_A 150 QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEA---HLRKLGLGYRARYVSAS 226 (360)
T ss_dssp CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHH---HHHHTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHH---HHHHcCCcHHHHHHHHH
Confidence 589999999999999999999999999998 489999999997654 46889995599999999
Q ss_pred HHHHHHc-CCC--------CC--CchhhhhcCCCCcHHHHHHHHHHhcCCc-ccccccchhhHHHhhhcc
Q 010868 179 AKMIVAE-GDG--------FP--NTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVVDGNVIRVLARLKAI 236 (498)
Q Consensus 179 a~~i~~~-~g~--------~p--~~~~~L~~LpGIG~~TA~~il~~a~~~p-~~~VD~~v~Rvl~Rl~~i 236 (498)
|+.+.++ +|. +| +++++|++|||||+|||++|++|++|+| +++||+||.|++.|++++
T Consensus 227 A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpvDthV~Ri~~r~~gl 296 (360)
T 2xhi_A 227 ARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHIAQRDYSW 296 (360)
T ss_dssp HHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCSHHHHHHHHHHHCC
T ss_pred HHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEecHHHHHHHHHHhCc
Confidence 9999987 443 56 7889999999999999999999999998 889999999999997554
No 19
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=99.89 E-value=1.1e-22 Score=203.92 Aligned_cols=142 Identities=22% Similarity=0.223 Sum_probs=118.1
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHH-------------hCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHH
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMT-------------KWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGA 179 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~-------------~fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a 179 (498)
.|||++||++||+|||+++++..++.+|.+ .||||++|+++++++| +++||++ ||++|+++|
T Consensus 111 ~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~G~~~~ra~~i~~~A 186 (282)
T 1mpg_A 111 VDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRAEALIHLA 186 (282)
T ss_dssp SCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHH
Confidence 689999999999999999999999999964 4799999999999986 8899987 999999999
Q ss_pred HHHHHc--CCCCC----CchhhhhcCCCCcHHHHHHHHHHhcCCc-ccccccchhhHHHhhhcccCCCCChHHHHHHHHH
Q 010868 180 KMIVAE--GDGFP----NTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVVDGNVIRVLARLKAISANPKDTSTVKNFWKL 252 (498)
Q Consensus 180 ~~i~~~--~g~~p----~~~~~L~~LpGIG~~TA~~il~~a~~~p-~~~VD~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~~ 252 (498)
+.+.++ ++..+ +.+++|++|||||+|||++|++|++|+| +++||.|+.| +++. .. +.+++.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~pvdd~~~r--~~l~----~~----~~~~~~~~ 256 (282)
T 1mpg_A 187 NAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIK--QRFP----GM----TPAQIRRY 256 (282)
T ss_dssp HHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHH--HHST----TC----CHHHHHHH
T ss_pred HHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCccccHHHH--HHhc----cC----CHHHHHHH
Confidence 999986 34444 3489999999999999999999999998 8888877766 4542 11 23456677
Q ss_pred HHhhcCCCChHHHHHHH
Q 010868 253 ATQLVDSCRPGDFNQSL 269 (498)
Q Consensus 253 ~~~l~~~~~~~~~~~~l 269 (498)
++.+.|...+..+|...
T Consensus 257 ~~~~~P~r~~a~~~lw~ 273 (282)
T 1mpg_A 257 AERWKPWRSYALLHIWY 273 (282)
T ss_dssp HGGGTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 78887766666666553
No 20
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.87 E-value=4.7e-22 Score=178.17 Aligned_cols=141 Identities=17% Similarity=0.261 Sum_probs=106.5
Q ss_pred eecccccccccccc-----eeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHH
Q 010868 307 VTSYPMKVLKARQR-----HDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREA 381 (498)
Q Consensus 307 ~~~~p~k~~K~k~k-----~~~v~~~II~~~~~~~~~~~~~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~a 381 (498)
++.||+|.+|++.+ +..++++|+ ..+|+||+.||+.++.++|+|+||||.++.+|+. ++|
T Consensus 2 ~~~lP~k~~kk~~~~~~~~~~~~~~~i~------------~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~---~~a 66 (153)
T 3ees_A 2 TDDSAVESKQKKSKIRKGHWIPVVAGFL------------RKDGKILVGQRPENNSLAGQWEFPGGKIENGETP---EEA 66 (153)
T ss_dssp ------------------CEEEEEEEEE------------EETTEEEEEECCTTSTTTTCEECSEEECCTTCCH---HHH
T ss_pred CCCccccCccccccccCCceEEEEEEEE------------EECCEEEEEEeCCCCCCCCeEECCceeeCCCCCH---HHH
Confidence 46789988876655 334444444 4578999999999999999999999999999866 899
Q ss_pred HHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCC
Q 010868 382 AECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT 461 (498)
Q Consensus 382 L~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp 461 (498)
+.||+.||+|+.+. ....++.+.|.|+|.++.+++|.+.+ ..+ .+...|+.+++|++.+++.+++++
T Consensus 67 a~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~e~~~~~W~~~~el~~~~~~ 133 (153)
T 3ees_A 67 LARELNEELGIEAE------VGELKLACTHSYGDVGILILFYEILY-WKG------EPRAKHHMMLEWIHPEELKHRNIP 133 (153)
T ss_dssp HHHHHHHHHSCEEE------CCCEEEEEEEEETTEEEEEEEEEECE-EES------CCCCSSSSEEEEECGGGGGGSCCC
T ss_pred HHHHHHHHHCCccc------cCceEEEEEEecCCCeEEEEEEEEEE-CCC------CcCCCccceEEEecHHHhhhCCCC
Confidence 99999999999876 55677889999999999999998864 333 123457789999999999999999
Q ss_pred hHHHHHHHHHHhhh
Q 010868 462 SGVRKVYTMVQKFK 475 (498)
Q Consensus 462 ~a~~kil~~L~~~~ 475 (498)
++++++++.+.+..
T Consensus 134 ~~~~~~l~~~~~~~ 147 (153)
T 3ees_A 134 EANRKILHKIYKAL 147 (153)
T ss_dssp HHHHTTHHHHHHHT
T ss_pred cchHHHHHHHHHhh
Confidence 99999999988764
No 21
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=99.87 E-value=2.3e-22 Score=202.82 Aligned_cols=142 Identities=23% Similarity=0.207 Sum_probs=115.0
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHh--------------CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHH
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK--------------WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEG 178 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~--------------fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~ 178 (498)
.|||+++|++||+|||+++++..++.+|.++ ||||++|+++++++| +++||++ ||++|+++
T Consensus 116 ~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~L----r~~G~~~rKa~~i~~~ 191 (295)
T 2jhn_A 116 MSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGL----RECGLSRRKAELIVEI 191 (295)
T ss_dssp SSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHH----HHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHH
Confidence 5899999999999999999999999999988 899999999999885 8899998 79999999
Q ss_pred HHHHHHc-CC--CCCC--chhhhhcCCCCcHHHHHHHHHHhcCCc-cccc-ccchhhHHHhhhcccCCCCChHHHHHHHH
Q 010868 179 AKMIVAE-GD--GFPN--TVSDLRKVPGIGNYTAGAIASIAFKEV-VPVV-DGNVIRVLARLKAISANPKDTSTVKNFWK 251 (498)
Q Consensus 179 a~~i~~~-~g--~~p~--~~~~L~~LpGIG~~TA~~il~~a~~~p-~~~V-D~~v~Rvl~Rl~~i~~~~~~~~~~~~l~~ 251 (498)
|+. .. ++ ..|. .+++|++|||||+|||++|++|++| | +++| |.|++|++.|+++.... ..+.+++.+
T Consensus 192 A~~--g~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD~~~rr~~~~~~g~~~~---~~~~~~~~~ 265 (295)
T 2jhn_A 192 AKE--ENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG-KNVFPADDLGVRRAVSRLYFNGEI---QSAEKVREI 265 (295)
T ss_dssp HTC--SSGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTCHHHHHHHHHHHSTTCC---CCHHHHHHH
T ss_pred HHC--CCHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC-CCcccchHHHHHHHHHHHhcCCCC---CCCHHHHHH
Confidence 998 22 11 2343 4899999999999999999999999 8 7788 56777799999765431 124456667
Q ss_pred HHHhhcCCCChHHH
Q 010868 252 LATQLVDSCRPGDF 265 (498)
Q Consensus 252 ~~~~l~~~~~~~~~ 265 (498)
.++.+-|...+..+
T Consensus 266 ~~e~~~p~r~~a~~ 279 (295)
T 2jhn_A 266 ARERFGRFARDILF 279 (295)
T ss_dssp HHHHTGGGHHHHHH
T ss_pred HHHhcccHHHHHHH
Confidence 77766554333333
No 22
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.83 E-value=3.5e-20 Score=168.12 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=104.2
Q ss_pred cccccccccccceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHH
Q 010868 309 SYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKK 388 (498)
Q Consensus 309 ~~p~k~~K~k~k~~~v~~~II~~~~~~~~~~~~~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~E 388 (498)
.=|++.+++++. ..+++++|. +.+|+||+.||+.++.++|+|+||||.++.+|+. .+|+.||+.|
T Consensus 17 ~gP~~~~~~~~~-~~~~~~~i~-----------~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~---~~aa~RE~~E 81 (158)
T 3hhj_A 17 QGPGSMPIKSSL-LIVVACALL-----------DQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETP---EASLIRELEE 81 (158)
T ss_dssp ----------CE-EEEEEEEEB-----------CTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCH---HHHHHHHHHH
T ss_pred CCCccCCCCCce-EEEEEEEEE-----------eCCCEEEEEEeCCCCCCCCEEECCceeecCCCCH---HHHHHHHHHH
Confidence 346665554433 334444442 5678999999999999999999999999999866 8999999999
Q ss_pred hcCCCCCCCcccccccccccEEEEcCCeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHH
Q 010868 389 SFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVY 468 (498)
Q Consensus 389 Elgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (498)
|+|+.+... ....++.+.|.|+|+++.+++|.|.+ ..+ .+...++.+++|++.+++.++++++++++++
T Consensus 82 EtGl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~e~~~~~W~~~~el~~~~~~~~~~~il 150 (158)
T 3hhj_A 82 ELGVHVQAD----NLFPLTFASHGYETFHLLMPLYFCSH-YKG------VAQGREGQNLKWIFINDLDKYPMPEADKPLV 150 (158)
T ss_dssp HHCCBCCGG----GCEEEEEEEEECSSCEEEEEEEEESC-CBS------CCCCTTSCEEEEEEGGGGGGSCCCTTTHHHH
T ss_pred HhCcEeecc----eEEEEEEEeeccCCcEEEEEEEEEEE-CCC------ccCCccccceEEEcHHHHhhCCCCcchHHHH
Confidence 999988611 11346778899999999999998853 222 2234577889999999999999999999999
Q ss_pred HHHHhh
Q 010868 469 TMVQKF 474 (498)
Q Consensus 469 ~~L~~~ 474 (498)
+.+.+.
T Consensus 151 ~~~~~~ 156 (158)
T 3hhj_A 151 QVLKNF 156 (158)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 998764
No 23
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.82 E-value=5.1e-20 Score=162.66 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=107.7
Q ss_pred cceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCc
Q 010868 319 QRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNC 398 (498)
Q Consensus 319 ~k~~~v~~~II~~~~~~~~~~~~~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~ 398 (498)
+++..++++|| ..+|+||+.||+..+.++|+|+||||.++.+|+. ++|+.||+.||+|+.+.
T Consensus 6 ~~~~~~~~~ii------------~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~---~~aa~RE~~EE~Gl~~~--- 67 (140)
T 2rrk_A 6 MKMIEVVAAII------------ERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQ---RQALVRELREELGIEAT--- 67 (140)
T ss_dssp SCEEEEEEEEE------------EETTEEEEEECCSSCSCCCCEECCEEECCTTSCH---HHHHHHHHHHHSCEEEE---
T ss_pred CccceEEEEEE------------EcCCEEEEEEcCCCCCCCCEEECCceecCCCCCH---HHHHHHHHHHHHCCeee---
Confidence 34555666666 3578999999999899999999999999998776 79999999999999876
Q ss_pred ccccccccccEEEEcCCeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhh
Q 010868 399 SIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 399 ~~~~~~~l~~v~H~fsH~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~ 476 (498)
....++.+.|.|+|+++.+++|.+.+ ..+ .+...|+.++.|++.+++.+++++++++++++.+.+..+
T Consensus 68 ---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~r~ 135 (140)
T 2rrk_A 68 ---VGEYVASHQREVSGRIIHLHAWHVPD-FHG------TLQAHEHQALVWCSPEEALQYPLAPADIPLLEAFMALRA 135 (140)
T ss_dssp ---CCEEEEEEEEEETTEEEEEEEEEESE-EEE------CCCCSSCSCEEEECHHHHTTSCCCTTHHHHHHHHHHHHH
T ss_pred ---cccEEEEEEEecCCcEEEEEEEEEEe-eCC------CcCCCccceeEEeCHHHHhhCCCChhHHHHHHHHHHHhh
Confidence 45678889999999999999998864 222 122356778999999999999999999999999877655
No 24
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.81 E-value=9e-20 Score=162.07 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=101.0
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|+||+.||+.++.++|+|+||||.++.+|+. .+|+.||+.||+|+.+... ....+..+.|.|+|+++.++
T Consensus 17 ~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~---~~aa~RE~~EE~Gl~~~~~----~~~~~~~~~~~~~~~~~~~~ 89 (144)
T 3r03_A 17 DPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETP---EAALVRELAEELGVDTRAS----CLAPLAFASHSYDTFHLLMP 89 (144)
T ss_dssp CTTSCEEEEECCTTSSSTTCEECSEEECCTTCCH---HHHHHHHHHHHHCCBCCGG----GCEEEEEEEEECSSSEEEEE
T ss_pred cCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCH---HHHHHHHHHHHhCceeecc----ceEEEEeeeccCCCeEEEEE
Confidence 5678999999999999999999999999998766 8999999999999988611 11456778999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhh
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~ 476 (498)
+|.+.+ ..+ .+...++.+++|++.+++.+++|+++++++++.+.+...
T Consensus 90 ~~~~~~-~~~------~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~ 137 (144)
T 3r03_A 90 LYACRS-WRG------RATAREGQTLAWVRAERLREYPMPPADLPLIPILQDWLE 137 (144)
T ss_dssp EEEECC-CBS------CCCCCSSCEEEEECGGGGGGSCCCTTTTTHHHHHHHHC-
T ss_pred EEEEEe-cCC------ccCCCCcceEEEEeHHHhccCCCCcchHHHHHHHhCccc
Confidence 998863 222 123456788999999999999999999999999887754
No 25
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.81 E-value=4.7e-20 Score=160.40 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=98.8
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|+||+.||+..+.++|+|+||||.++.+|+. ++|+.||+.||+|+.+. ....++.+.|.|+|.++.++
T Consensus 13 ~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~---~~aa~RE~~EE~G~~~~------~~~~~~~~~~~~~~~~~~~~ 83 (129)
T 1mut_A 13 NENNEIFITRRAADAHMANKLEFPGGKIEMGETP---EQAVVRELQEEVGITPQ------HFSLFEKLEYEFPDRHITLW 83 (129)
T ss_dssp ETTTEEEEEECSSCCSSSCCEECCCCCSSSCSST---THHHHHHHHTTTCCSSC------EECCCCCCBCCCSSCEEECC
T ss_pred ecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCH---HHHHHHHHHHHhCCccc------cceEEEEEEEecCCceEEEE
Confidence 5678999999999899999999999999999876 78999999999999886 55678888999999999989
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHH
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQ 472 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (498)
+|.+.+ ..+ .+...|+.+++|++.+++.+++||++++++++.+.
T Consensus 84 ~~~~~~-~~~------~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~l~ 127 (129)
T 1mut_A 84 FWLVER-WEG------EPWGKEGQPGEWMSLVGLNADDFPPANEPVIAKLK 127 (129)
T ss_dssp CEEEEE-CSS------CCCCCSSCCCEEEESSSCCTTTSCTTCHHHHHHHT
T ss_pred EEEEEc-cCC------ccCCcccceeEEeCHHHcccccCCchhHHHHHHHh
Confidence 998863 222 12235677899999999999999999999998864
No 26
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.79 E-value=1.6e-19 Score=160.56 Aligned_cols=115 Identities=11% Similarity=0.163 Sum_probs=93.9
Q ss_pred CCeEEEEecCCCCC--CCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 344 DGVFILVKRRDEGL--LAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 344 ~gkvLI~KRp~~gl--laGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+|+||+.||+..+. ++|+|+||||.++.+|++ ++|+.||+.||+|+++. ..+.++.+.|.|+|.++.++
T Consensus 16 ~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~---~~aa~REl~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 86 (140)
T 3gwy_A 16 GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESL---QEALQREIMEEMDYVIE------VGEKLLTVHHTYPDFEITMH 86 (140)
T ss_dssp TTEEEEEEC---------CCEECSEEECCTTCCH---HHHHHHHHHHHHCCCEE------EEEEEEEEECCCSSCCEEEE
T ss_pred CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCH---HHHHHHHHHHhhCcEEE------eceEEEEEEEEeCCceEEEE
Confidence 78999999999888 999999999999999876 89999999999999986 66788889999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhh
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKF 474 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~ 474 (498)
+|.+.+ ..+ .+...|..+++|++++++.+++|+++++++++.+.+.
T Consensus 87 ~f~~~~-~~~------~~~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~ 132 (140)
T 3gwy_A 87 AFLCHP-VGQ------RYVLKEHIAAQWLSTREMAILDWAEADKPIVRKISEQ 132 (140)
T ss_dssp EEEEEE-CCS------CCCCCSSCEEEEECHHHHTTSCBCGGGHHHHHHHHC-
T ss_pred EEEEEe-cCC------cccccccceeEeccHHHHhhCCCCcccHHHHHHHHhC
Confidence 999864 233 1233577889999999999999999999999998765
No 27
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.78 E-value=1.7e-18 Score=156.21 Aligned_cols=121 Identities=14% Similarity=0.216 Sum_probs=102.8
Q ss_pred cCCCeEEEEecCCC-CCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEE
Q 010868 342 QPDGVFILVKRRDE-GLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKV 420 (498)
Q Consensus 342 ~~~gkvLI~KRp~~-gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l 420 (498)
+.+|+||+.||+.. +.++|+|+||||.++.+|++ ++|+.||+.||+|+.+. ..+.++.+.|.|+|.++.+
T Consensus 17 ~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~---~~aa~REl~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~ 87 (153)
T 3grn_A 17 NEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESL---KEGVAREVWEETGITMV------PGDIAGQVNFELTEKKVIA 87 (153)
T ss_dssp CTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCH---HHHHHHHHHHHHCCCCC------CCSEEEEEEEECSSCEEEE
T ss_pred cCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCH---HHHHHhhhhhhhCcEee------cceEEEEEEEecCCceEEE
Confidence 56789999999986 89999999999999999876 89999999999999987 5677888999999999989
Q ss_pred EEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCC-CChHHHHHHHHHHhhhhc
Q 010868 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG-LTSGVRKVYTMVQKFKQK 477 (498)
Q Consensus 421 ~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~-fp~a~~kil~~L~~~~~~ 477 (498)
++|.+.. ..+.. ....++.+++|++.+++.+++ ++++++++++.+.....+
T Consensus 88 ~~~~~~~-~~~~~-----~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~l~~~~~~ 139 (153)
T 3grn_A 88 IVFDGGY-VVADV-----KLSYEHIEYSWVSLEKILGMETLPAYFRDFFERFDRENKK 139 (153)
T ss_dssp EEEEEEE-CCCCC-----CCCTTEEEEEEECHHHHTTCSSSCHHHHHHHHHHHHHHTC
T ss_pred EEEEEEe-cCCcE-----ecCCCcceEEEEEHHHhhhcccchHHHHHHHHHHhccccC
Confidence 9888763 33321 112567789999999999999 999999999999877554
No 28
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.70 E-value=8.5e-17 Score=146.78 Aligned_cols=112 Identities=8% Similarity=-0.091 Sum_probs=94.6
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEc--CCeEEEEEE
Q 010868 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF--SHIRLKVHV 422 (498)
Q Consensus 345 gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~f--sH~~l~l~~ 422 (498)
++||+.||+ .+.|+|+|+||||+++.+|++ ++|+.||+.||+|+++. ..+.++.+.|.+ ++..+.+++
T Consensus 23 ~~vLL~~r~-~~~~~g~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
T 3exq_A 23 QRVLVEDKV-NVPWKAGHSFPGGHVEVGEPC---ATAAIREVFEETGLRLS------GVTFCGTCEWFDDDRQHRKLGLL 92 (161)
T ss_dssp CCEEEECCC-CCTTTCSBBCCCCBCCTTSCH---HHHHHHHHHHHHCCEES------CCEEEEEEEEECSSCSSEEEEEE
T ss_pred CEEEEEEcc-CCCCCCCEEccceecCCCCCH---HHHHHHHHHHhhCcEec------CCcEEEEEecccCCCCeEEEEEE
Confidence 699999998 677999999999999999876 89999999999999886 567788888998 677787888
Q ss_pred EEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHh
Q 010868 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQK 473 (498)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (498)
|.+.. ..+. +...+..+++|++++++.++++++.++++++.+.+
T Consensus 93 ~~~~~-~~~~------~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 136 (161)
T 3exq_A 93 YRASN-FTGT------LKASAEGQLSWLPITALTRENSAASLPEFLQVFTG 136 (161)
T ss_dssp EEECC-EESC------CCGGGTTTEEEECGGGCCTTTBCTTHHHHHHHHTT
T ss_pred EEEec-cCCc------cCCCccceEEEeeHHHhhhCccChHHHHHHHHHhh
Confidence 87753 3331 22356778999999999999999999999999876
No 29
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.68 E-value=7.3e-17 Score=148.05 Aligned_cols=150 Identities=14% Similarity=0.053 Sum_probs=92.9
Q ss_pred ccCCCCCCCCCCCcccChhhhcCCCCCccceecccccccccccceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCC
Q 010868 277 CTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEG 356 (498)
Q Consensus 277 C~~~~P~C~~CpL~~~C~~~~~~~~~~~~~~~~~p~k~~K~k~k~~~v~~~II~~~~~~~~~~~~~~~gkvLI~KRp~~g 356 (498)
|.+.+|.|..||.+..|.... ....+++||. .+|+||+.||+.+
T Consensus 1 ms~~~~~~~~~~~~~~~~~~~-----------------------~~~~v~~ii~------------~~~~vLL~~r~~~- 44 (171)
T 3id9_A 1 MSLEGFICKFNRKRRLYIENI-----------------------MQVRVTGILI------------EDEKVLLVKQKVA- 44 (171)
T ss_dssp --------------------------------------------CEEEEEEEEE------------ETTEEEEEECSST-
T ss_pred CCccccccccChhhhhccCCc-----------------------eEEEEEEEEE------------ECCEEEEEEEECC-
Confidence 356679999999887774211 1122344442 3689999999864
Q ss_pred CCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEEEEEEEEeCCccc-
Q 010868 357 LLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDK- 435 (498)
Q Consensus 357 llaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~~~~~~~~g~~~~- 435 (498)
+|+|+||||+++.+|++ ++|+.||+.||+|+++. ....++.+.|.+++......+|.+.. ..+....
T Consensus 45 --~~~w~~PgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 112 (171)
T 3id9_A 45 --NRDWSLPGGRVENGETL---EEAMIREMREETGLEVK------IKKLLYVCDKPDASPSLLHITFLLER-IEGEITLP 112 (171)
T ss_dssp --TCCEECCEEECCTTCCH---HHHHHHHHHHHHCCCEE------EEEEEEEEEETTSSSCEEEEEEEEEE-C-------
T ss_pred --CCeEECCCccCCCCCCH---HHHHHHHHHHHHCCccc------cceEEEEEcccCCCCcEEEEEEEEEE-cCCcccCC
Confidence 89999999999999876 89999999999999986 56677777888887766666666653 3332110
Q ss_pred ccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhh
Q 010868 436 WVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKF 474 (498)
Q Consensus 436 ~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~ 474 (498)
.......|..+++|++.+++.+++|+++++++++.....
T Consensus 113 ~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~l~~~~~~ 151 (171)
T 3id9_A 113 SNEFDHNPIHDVQMVPINELSYYGFSETFINLISGGLAN 151 (171)
T ss_dssp ------CCCCCEEEEETGGGGGGTCCTTCSHHHHHGGGG
T ss_pred ccCCCcCeeeeEEEEeHHHHhhCCCCHHHHHHHHHhhcc
Confidence 001123567889999999999999999999998886443
No 30
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.67 E-value=2e-16 Score=144.22 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=80.6
Q ss_pred cCCCeEEEEecCC-CCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccc------cEEEEcC
Q 010868 342 QPDGVFILVKRRD-EGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVG------EFVHIFS 414 (498)
Q Consensus 342 ~~~gkvLI~KRp~-~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~------~v~H~fs 414 (498)
..+|+||+.||+. .+.++|+|+||||+++.+|++ ++|+.||+.||+|+++. ....+. ...|.|+
T Consensus 36 ~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~ 106 (165)
T 3oga_A 36 QNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERI---EEALRREIREELGEQLI------LSDITPWTFRDDIRIKTYA 106 (165)
T ss_dssp EETTEEEEEEECC------CCEECCCEECCTTCCH---HHHHHHHHHHHHCSSCC------EEEEEEEEEEEEEEEEEC-
T ss_pred eCCCEEEEEEecCCCCCCCCeEECCccccCCCCCH---HHHHHHHHHHHhCCCcc------ccceeeeeeecceeeEecC
Confidence 4578999999984 568999999999999999876 89999999999999886 233222 1258888
Q ss_pred CeEEE-----EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHH
Q 010868 415 HIRLK-----VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMV 471 (498)
Q Consensus 415 H~~l~-----l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (498)
+..+. +.+|.+.. ..+ .. ....|+.+++|++++++.+++++++++++++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~-~~~-~~----~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~ 162 (165)
T 3oga_A 107 DGRQEEIYMIYLIFDCVS-ANR-DI----CINDEFQDYAWVKPEELALYDLNVATRHTLALK 162 (165)
T ss_dssp -CCEEEEEEEEEEEEEEE-SCC-CC----CCCTTEEEEEEECGGGGGGSCBCHHHHHHHHHT
T ss_pred CCCceeEEEEEEEEEeec-cCC-Cc----cCCchheeeEEccHHHHhhCCCCHHHHHHHHHh
Confidence 87543 34444432 222 11 112466789999999999999999999998764
No 31
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.67 E-value=2.1e-16 Score=146.74 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=96.7
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC--eEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH--IRLK 419 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH--~~l~ 419 (498)
..+|+||+.||. .+.++|+|+||||.++.+|++ ++|+.||+.||+|+++. ....++.+.|.|++ ..+.
T Consensus 33 ~~~~~vLL~~r~-~~~~~g~W~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~ 102 (176)
T 3q93_A 33 LQPQRVLLGMKK-RGFGAGRWNGFGGKVQEGETI---EDGARRELQEESGLTVD------ALHKVGQIVFEFVGEPELMD 102 (176)
T ss_dssp ECSSEEEEEEEC-SSTTTTSEECEEEECCTTSCH---HHHHHHHHHHHHSCEES------CCEEEEEEEEEETTCSCEEE
T ss_pred EeCCEEEEEEEc-CCCCCCeEECceecCCCCCCH---HHHHHHHHHHHHCCcce------eeEEEEEEEEEcCCCCcEEE
Confidence 457899999995 456899999999999999876 89999999999999986 56788899999987 5667
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhh
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFK 475 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~ 475 (498)
+++|.+.. ..+ .+...++.+++|++++++.+++++++++++++.+.+..
T Consensus 103 ~~~f~~~~-~~~------~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~ 151 (176)
T 3q93_A 103 VHVFCTDS-IQG------TPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKK 151 (176)
T ss_dssp EEEEEESC-EES------CCCCCSSEEEEEEETTCCCGGGBCTTHHHHHHHHHTTC
T ss_pred EEEEEEEC-CCC------CcCCCcceeeEEeeHHHccccccCcchHHHHHHHHcCC
Confidence 78887753 333 12335677889999999999999999999999987653
No 32
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.64 E-value=5.5e-16 Score=134.35 Aligned_cols=113 Identities=11% Similarity=0.038 Sum_probs=94.3
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|+||+.||+. |+|+||||.++.+|+. ++|+.||+.||+|+.+. ....++.+.|.++|.+..++
T Consensus 11 ~~~~~vLl~~r~~-----g~w~~PgG~ve~gE~~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 76 (126)
T 1vcd_A 11 NAKREVLLLRDRM-----GFWVFPKGHPEPGESL---EEAAVREVWEETGVRAE------VLLPLYPTRYVNPKGVEREV 76 (126)
T ss_dssp CTTSCEEEEECTT-----SCEECCEECCCTTCCH---HHHHHHHHHHHHCCEEE------EEEEEEEEEEECTTSCEEEE
T ss_pred cCCCEEEEEEECC-----CCccCCcCcCCCCCCH---HHHHHHHHHHhhCcEee------eccEEeEEEEecCCceEEEE
Confidence 5678999999975 7899999999999876 79999999999999876 56778889999999988888
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhh
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKF 474 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~ 474 (498)
+|.+.. ..+. . ....++.+++|++.+++.++.++++++++++.+.+.
T Consensus 77 ~~~~~~-~~~~-~----~~~~e~~~~~w~~~~el~~~~~~~~~~~~l~~~~~~ 123 (126)
T 1vcd_A 77 HWFLMR-GEGA-P----RLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALER 123 (126)
T ss_dssp EEEEEE-EESC-C----CCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHH
T ss_pred EEEEEE-cCCC-C----CCCcceeeeEEcCHHHHHHhhcChhHHHHHHHHHHh
Confidence 888864 3332 1 123567889999999999999999999999888765
No 33
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.64 E-value=5.7e-16 Score=135.51 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=92.6
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC----CeEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS----HIRLK 419 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs----H~~l~ 419 (498)
+|+||+.||+. |+|+||||.++.+|++ .+|+.||+.||+|+++. ....++.+.|.|+ |.+..
T Consensus 14 ~~~vLl~~r~~-----~~w~~PgG~ve~gE~~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~~~ 79 (134)
T 2pbt_A 14 DGEVLLIKTPS-----NVWSFPKGNIEPGEKP---EETAVREVWEETGVKGE------ILDYIGEIHYWYTLKGERIFKT 79 (134)
T ss_dssp TTEEEEEECTT-----SCEECCEEECCTTCCH---HHHHHHHHHHHHSEEEE------EEEEEEEEEEEEEETTEEEEEE
T ss_pred CCEEEEEEeCC-----CcEECCccccCCCCCH---HHHHHHHHHHHHCCccE------EeeeeeEEEEEeeCCCcEEEEE
Confidence 67999999975 9999999999999876 89999999999999886 5678888899998 67788
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhh
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFK 475 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~ 475 (498)
+++|.+.+ ..+.. .+. .++.+++|++.+++.++.++++++++++.+.+..
T Consensus 80 ~~~~~~~~-~~~~~----~~~-~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~ 129 (134)
T 2pbt_A 80 VKYYLMKY-KEGEP----RPS-WEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKLK 129 (134)
T ss_dssp EEEEEEEE-EEECC----CCC-TTSSEEEEEEHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred EEEEEEEe-cCCCc----CCC-cceeEEEEEcHHHHHhhhcchhHHHHHHHHHHHh
Confidence 88888864 23211 122 2788999999999999999999999998876653
No 34
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.63 E-value=7.2e-16 Score=142.54 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=96.9
Q ss_pred cCCCeEEEEecCCCC-CCCccccc-CccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEE
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWEF-PSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLK 419 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWEF-Pggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~ 419 (498)
+.+|+||+++|+..+ .++|+|+| |||.++.+|++ ++|+.||+.||+|+.+. ....++.+.|.+++.++.
T Consensus 46 ~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~ 116 (180)
T 2fkb_A 46 DGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQL---LESARREAEEELGIAGV------PFAEHGQFYFEDKNCRVW 116 (180)
T ss_dssp CSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCH---HHHHHHHHHHHHCCBSC------CCEEEEEEEEEETTEEEE
T ss_pred CCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCH---HHHHHHHHHHHHCCCcc------ceEEEEEEEecCCCceEE
Confidence 567899999997654 56999999 99999999876 89999999999999875 456778889999999988
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC--CCChHHHHHHHHHHhhhh
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM--GLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~--~fp~a~~kil~~L~~~~~ 476 (498)
+++|.+. ..+.. .....++.+++|++.+++.++ +|++++++++..+.....
T Consensus 117 ~~~f~~~--~~~~~----~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~~~~~ 169 (180)
T 2fkb_A 117 GALFSCV--SHGPF----ALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKRNA 169 (180)
T ss_dssp EEEEEEE--CCCCC----CCCTTTEEEEEEECHHHHHTTGGGBCHHHHHHHHHHHHHC-
T ss_pred EEEEEEe--cCCCc----CCChhHhheEEEecHHHHHHHHHHhCCcHHHHHHHHHHhhc
Confidence 8888875 33311 123456778999999999998 899999999988766543
No 35
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.62 E-value=1.2e-15 Score=137.31 Aligned_cols=111 Identities=13% Similarity=0.082 Sum_probs=86.4
Q ss_pred EEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC-CeEEEEEEEEE
Q 010868 347 FILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS-HIRLKVHVELL 425 (498)
Q Consensus 347 vLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs-H~~l~l~~~~~ 425 (498)
||+.+|+.++ |+| |+||||+++.+|++ ++|+.||+.||+|+++. ..+.++.+.|.++ |.++.+++|.+
T Consensus 25 vLl~~r~~~~-~~g-w~lPgG~ve~gE~~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (155)
T 2b06_A 25 MQYRAPENNR-WSG-YAFPGGHVENDEAF---AESVIREIYEETGLTIQ------NPQLVGIKNWPLDTGGRYIVICYKA 93 (155)
T ss_dssp EEEEC------CCE-EECCCCBCCTTSCH---HHHHHHHHHHHHSEEEE------SCEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEECCCCC-CCC-EeccceecCCCCCH---HHHHHHHHHHHhCcccc------CCcEEEEEeeccCCCceEEEEEEEE
Confidence 9999999877 888 99999999999876 89999999999999876 4566777777774 67777888887
Q ss_pred EEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhh
Q 010868 426 VLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFK 475 (498)
Q Consensus 426 ~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~ 475 (498)
.. ..+ .+...++.+++|++++++.+++++++++++++.+....
T Consensus 94 ~~-~~~------~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~ 136 (155)
T 2b06_A 94 TE-FSG------TLQSSEEGEVSWVQKDQIPNLNLAYDMLPLMEMMEAPD 136 (155)
T ss_dssp CE-EEE------CCCCBTTBEEEEEEGGGGGGSCBCTTHHHHHHHHHCTT
T ss_pred Ee-cCC------CCCCCcceeeEEeeHHHhhhCCCChhHHHHHHHHhCCC
Confidence 63 233 12235678899999999999999999999998876553
No 36
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.61 E-value=3.2e-15 Score=135.72 Aligned_cols=115 Identities=18% Similarity=0.153 Sum_probs=93.6
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEc--CCeEEEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF--SHIRLKVH 421 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~f--sH~~l~l~ 421 (498)
+|+||+.||.... ++|+|+||||.++.+|++ .+|+.||+.||+|+++. ..+.++.+.|.| ++.++.++
T Consensus 39 ~~~vLL~~r~~~~-~~~~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 108 (157)
T 4dyw_A 39 DGRILLIKRKRAP-EAGCWGLPGGKVDWLEPV---ERAVCREIEEELGIALE------RATLLCVVDHIDAANGEHWVAP 108 (157)
T ss_dssp TTEEEEEEECSSS-STTCEECCEEECCTTCCH---HHHHHHHHHHHHSCEEE------SCEEEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEecCCC-CCCEEECCcccCCCCCCH---HHHHHHHHHHHHCcccc------cCcEEEEEEeeccCCCcEEEEE
Confidence 7899999998766 899999999999999876 89999999999999886 567788888998 57778788
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHh
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQK 473 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (498)
+|.+.+ ..+... .....|+.+++|++++++.+ .++++++++++.|+.
T Consensus 109 ~f~~~~-~~~~~~---~~~~~E~~~~~W~~~~el~~-~l~~~~~~~l~~l~~ 155 (157)
T 4dyw_A 109 VYLAHA-FSGEPR---VVEPDRHEALGWFALDDLPQ-PLTHATRIALEQVTR 155 (157)
T ss_dssp EEEESE-EESCCC---CSCTTTEEEEEEEETTSCCS-SBCHHHHHHHHHHC-
T ss_pred EEEEEE-cCCCcc---cCCCCcEeEEEEECHHHccc-ccCHHHHHHHHHHHh
Confidence 888864 333211 11224567899999999998 899999999998864
No 37
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.59 E-value=2.5e-15 Score=133.60 Aligned_cols=112 Identities=16% Similarity=0.194 Sum_probs=85.5
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC----eEE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH----IRL 418 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH----~~l 418 (498)
.+|+||+.||+. |.|+||||++++||++ ++|+.||+.||+|+++. ....++.+.|.|+. ...
T Consensus 13 ~~~~vLL~~r~~-----g~W~~PgG~ve~gEt~---~~aa~RE~~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~~ 78 (134)
T 3i7u_A 13 KDGEVLLIKTPS-----NVWSFPKGNIEPGEKP---EETAVREVWEETGVKGE------ILDYIGEIHYWYTLKGERIFK 78 (134)
T ss_dssp ETTEEEEEECTT-----SCEECCEEECCTTCCH---HHHHHHHHHHHHSEEEE------EEEEEEEEEEEEEETTEEEEE
T ss_pred ECCEEEEEEeCC-----CcEECCeeEecCCCCH---HHHHHHHHHHhcCceEE------EeeeeeeeeEEecCCCceEEE
Confidence 478999999963 6899999999999877 89999999999999876 56677777776642 223
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhh
Q 010868 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKF 474 (498)
Q Consensus 419 ~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~ 474 (498)
.+++|.|.. ..+. . . ...|+.+++|++.+++.++...+.++.+++...+.
T Consensus 79 ~~~~f~~~~-~~~~-~---~-~~~E~~~~~W~~~~e~~~~l~~~~~r~il~~a~~l 128 (134)
T 3i7u_A 79 TVKYYLMKY-KEGE-P---R-PSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKL 128 (134)
T ss_dssp EEEEEEEEE-EEEC-C---C-CCTTSSEEEEEEHHHHHHHBCSHHHHHHHHHHHHH
T ss_pred EEEEEEEEE-cCCc-C---c-CChhheEEEEEEHHHHhhhcCChHHHHHHHHHHHH
Confidence 456677763 3331 1 1 13578899999999999887778899988765543
No 38
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.56 E-value=8.1e-15 Score=137.68 Aligned_cols=113 Identities=11% Similarity=0.117 Sum_probs=89.6
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC-----eE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH-----IR 417 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH-----~~ 417 (498)
.+|+||+.||+. +|+|+||||+++.+|++ ++|+.||+.||+|+++. ..+.++.+.|.+++ .+
T Consensus 13 ~~~~vLL~~r~~----~g~W~lPGG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~ 79 (188)
T 3fk9_A 13 DHDQVLLLQKPR----RGWWVAPGGKMEAGESI---LETVKREYWEETGITVK------NPELKGIFSMVIFDEGKIVSE 79 (188)
T ss_dssp ETTEEEEEECTT----TCCEECCEEECCTTCCH---HHHHHHHHHHHHSCEES------SCEEEEEEEEEEEETTEEEEE
T ss_pred ECCEEEEEEeCC----CCeEECCeecccCCCCH---HHHHHHHHHHHHCCCCC------CceEEEEEEEEecCCCcceEE
Confidence 478999999974 78999999999999876 89999999999999886 55677788888765 33
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhh
Q 010868 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKF 474 (498)
Q Consensus 418 l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~ 474 (498)
+.+++|.+.. ..+... ...+..+++|++.+++.+++++++++.+++.+.+.
T Consensus 80 ~~~~~f~a~~-~~~~~~-----~~~e~~~~~W~~~~el~~~~l~~~~~~~l~~~l~~ 130 (188)
T 3fk9_A 80 WMLFTFKATE-HEGEML-----KQSPEGKLEWKKKDEVLELPMAAGDKWIFKHVLHS 130 (188)
T ss_dssp EEEEEEEESC-EESCCC-----SEETTEEEEEEEGGGGGGSCCCHHHHHHHHHHTTC
T ss_pred EEEEEEEEEC-CCCCCc-----CCCCCEeEEEEEHHHhhhCCCCHHHHHHHHHHHcC
Confidence 4567777652 333211 12345689999999999999999999999998765
No 39
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.56 E-value=4.4e-15 Score=133.96 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=89.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCe-----
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI----- 416 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~----- 416 (498)
+.+++||+.||..++ ++|+|+||||.++.+|+. ++|+.||+.||+|+.+.. .....++.+.|.|+|.
T Consensus 27 ~~~~~vLl~~r~~~~-~~g~w~~PgG~ve~gE~~---~~aa~REl~EEtGl~~~~----~~~~~~~~~~~~~~~~~~~~~ 98 (160)
T 1rya_A 27 NSRGEFLLGKRTNRP-AQGYWFVPGGRVQKDETL---EAAFERLTMAELGLRLPI----TAGQFYGVWQHFYDDNFSGTD 98 (160)
T ss_dssp CTTSCEEEEEECSSS-STTSEECCEEECCTTCCH---HHHHHHHHHHHHSSCCCG----GGSEEEEEEEEEESSBTTBSS
T ss_pred cCCCEEEEEeccCCC-CCCEEECCccccCCCCCH---HHHHHHHHHHHHCCCCCc----ccceEEEEEeEEEcccccCCC
Confidence 557899999998755 799999999999999876 799999999999998530 1356788899999975
Q ss_pred ---EEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCC-hHHHHHHHHHH
Q 010868 417 ---RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT-SGVRKVYTMVQ 472 (498)
Q Consensus 417 ---~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp-~a~~kil~~L~ 472 (498)
++.+++|.+.+ .++.. .....++.+++|++.+++.++++. +..+.+++.+.
T Consensus 99 ~~~~~~~~~f~~~~--~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~~~ 153 (160)
T 1rya_A 99 FTTHYVVLGFRFRV--SEEEL---LLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEK 153 (160)
T ss_dssp SCEEEEEEEEEEEC--CGGGC---CCCSSSEEEEEEECHHHHHHCTTBCHHHHGGGCHHH
T ss_pred cCcEEEEEEEEEEc--Ccccc---ccCCCccceEEEecHHHHhhccccCHHHHHHHHHHh
Confidence 67778887753 22111 122356778999999999999754 55666665543
No 40
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.56 E-value=3.1e-15 Score=133.04 Aligned_cols=110 Identities=12% Similarity=0.023 Sum_probs=84.1
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEE------EEcCCeE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV------HIFSHIR 417 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~------H~fsH~~ 417 (498)
+|+||+.||+. |+|+||||.++.+|++ ++|+.||+.||+|+++. ....++.+. |..+|.+
T Consensus 30 ~~~vLl~~r~~-----g~w~~PgG~ve~gE~~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 95 (148)
T 2azw_A 30 NNTMVLVQAPN-----GAYFLPGGEIEGTETK---EEAIHREVLEELGISVE------IGCYLGEADEYFYSNHRQTAYY 95 (148)
T ss_dssp GTEEEEEECTT-----SCEECSEEECCTTCCH---HHHHHHHHHHHHSEEEE------EEEEEEEEEEEEEETTTTEEEE
T ss_pred CCeEEEEEcCC-----CCEeCCCcccCCCCCH---HHHHHHHHHHHhCCeeE------eeeEEEEEEEEEcCCCCCcceE
Confidence 68999999953 7999999999999876 79999999999999875 445565553 2223566
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHh
Q 010868 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQK 473 (498)
Q Consensus 418 l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (498)
+.+++|.+.. ..+.. ....++.+++|++++++.++.++..++++++.+.+
T Consensus 96 ~~~~~~~~~~-~~~~~-----~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 145 (148)
T 2azw_A 96 NPGYFYVANT-WRQLS-----EPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWLA 145 (148)
T ss_dssp EEEEEEEEEE-EEECS-----SCC-CCSEEEEECHHHHHHHBSCHHHHHHHHHHHH
T ss_pred EEEEEEEEEc-CcCCc-----CCCCceeeEEEeeHHHHHhhhcchhHHHHHHHHHH
Confidence 7788888764 22211 12246678999999999999999999999988764
No 41
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.55 E-value=2.8e-15 Score=133.24 Aligned_cols=115 Identities=15% Similarity=0.134 Sum_probs=85.8
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCccccccccc-----------ccEEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDV-----------GEFVHI 412 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l-----------~~v~H~ 412 (498)
+|++|+.||+.. +|+|+||||+++.+|++ .+|+.||+.||+|+++... ....+ ....|.
T Consensus 21 ~~~vLl~~r~~~---~g~w~~PgG~ve~gE~~---~~aa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 90 (150)
T 2o1c_A 21 TKRVLMLQRRDD---PDFWQSVTGSVEEGETA---PQAAMREVKEEVTIDVVAE----QLTLIDCQRTVEFEIFSHLRHR 90 (150)
T ss_dssp TCEEEEEECSSS---TTCEESEEEECCTTCCH---HHHHHHHHHHHHCCCHHHH----TCCEEEEEEEEEEECCGGGGGG
T ss_pred CCEEEEEEecCC---CCceECCccccCCCCCH---HHHHHHHHHHHhCCCcccc----ceeEEeeeceeeeeeecccccc
Confidence 589999999875 78999999999999876 7999999999999987510 00111 122234
Q ss_pred cC--CeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhh
Q 010868 413 FS--HIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKF 474 (498)
Q Consensus 413 fs--H~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~ 474 (498)
|+ |.+..+++|.+.+ .++.. ....|+.+++|++.+++.++.++++++++++.+.+.
T Consensus 91 ~~~~~~~~~~~~f~~~~--~~~~~----~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 148 (150)
T 2o1c_A 91 YAPGVTRNTESWFCLAL--PHERQ----IVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVIN 148 (150)
T ss_dssp BCTTCCEEEEEEEEEEE--SSCCC----CCCSSSSCEEEEEHHHHHHHCSCHHHHHHHHHHTTC
T ss_pred cCCCCcceEEEEEEEEc--CCCCC----cChhHhhccEeecHHHHHhhhcCHHHHHHHHHHHHh
Confidence 55 5667788888864 32211 122578899999999999999999999999887653
No 42
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.54 E-value=1.4e-15 Score=142.78 Aligned_cols=144 Identities=16% Similarity=0.090 Sum_probs=93.0
Q ss_pred CCCCCCcccChhhhcCCCCCccceecccccccccccceeeeeeEEEEEecCCCCCCcccCCC--eEEEEecCCC-CCCCc
Q 010868 284 CTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDG--VFILVKRRDE-GLLAG 360 (498)
Q Consensus 284 C~~CpL~~~C~~~~~~~~~~~~~~~~~p~k~~K~k~k~~~v~~~II~~~~~~~~~~~~~~~g--kvLI~KRp~~-gllaG 360 (498)
|..+|+.+.|.+...+. +..+|++..+.+.....++++++ +.+| +||+.||... +.++|
T Consensus 3 ~p~~P~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~i------------~~~~~~~vLL~~r~~~~~~~~g 64 (194)
T 1nqz_A 3 APHDPLDDIQADPWALW------LSGRTRTALELPHYRRAAVLVAL------------TREADPRVLLTVRSSELPTHKG 64 (194)
T ss_dssp -CCCHHHHHHTCTTCCC------BCC----------CEEEEEEEEE------------ESSSSCBBCEEEEC------CC
T ss_pred CCCCcCCHHHHHHHHHH------HhhcChhhccCCCCceEEEEEEE------------ecCCCeEEEEEEecCCCCCCCC
Confidence 55788999999877663 56778776554333333332222 3455 8999999865 67899
Q ss_pred ccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEEEEEEEEeCCcccccccc
Q 010868 361 LWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQ 440 (498)
Q Consensus 361 LWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~~~~~~~~g~~~~~~~~~ 440 (498)
+|+||||.++.+|+. ++|+.||+.||+|+++. ..+.++.+.|.+++....+++|.+.+ .+... .....
T Consensus 65 ~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~~f~~~~--~~~~~-~~~~~ 132 (194)
T 1nqz_A 65 QIAFPGGSLDAGETP---TQAALREAQEEVALDPA------AVTLLGELDDVFTPVGFHVTPVLGRI--APEAL-DTLRV 132 (194)
T ss_dssp CEECSEEECCTTCCH---HHHHHHHHHHHHCCCGG------GCEEEEECCCEEETTTEEEEEEEEEE--CGGGG-GGCCC
T ss_pred eEECCcccCCCCCCH---HHHHHHHHHHHHCCCcc------ceEEEEEccCccCCCCeEEEEEEEEe--cCCcc-ccCCC
Confidence 999999999999876 89999999999999886 55677777777776667778888764 32111 01223
Q ss_pred cCCCCceeeecCCCc-CC
Q 010868 441 DKGTLSWKCVDGGTL-AS 457 (498)
Q Consensus 441 ~~e~~~~~Wv~~~eL-~~ 457 (498)
..|..++.|++.+++ .+
T Consensus 133 ~~E~~~~~W~~~~el~~~ 150 (194)
T 1nqz_A 133 TPEVAQIITPTLAELRAV 150 (194)
T ss_dssp CTTEEEEECCBHHHHHHS
T ss_pred ccceeEEEEEEHHHhccC
Confidence 456778999999988 44
No 43
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.54 E-value=9.3e-15 Score=128.56 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=91.6
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccc-cccccEEEEcCCeEEEEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILR-EDVGEFVHIFSHIRLKVHV 422 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~-~~l~~v~H~fsH~~l~l~~ 422 (498)
+++||+.||+.+ +|+|+||||+++.+|++ ++|+.||+.||+|+.+... ... ..++.+.|.+++.+..+++
T Consensus 17 ~~~vLl~~r~~~---~~~w~~PgG~ve~gE~~---~~aa~RE~~EEtGl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 87 (138)
T 1ktg_A 17 KIEFLLLQASYP---PHHWTPPKGHVDPGEDE---WQAAIRETKEEANITKEQL---TIHEDCHETLFYEAKGKPKSVKY 87 (138)
T ss_dssp EEEEEEEEESST---TCCEESSEEECCTTCCH---HHHHHHHHHHHHCCCGGGE---EEEEEEEEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEccCC---CCcEeCCccccCCCCCH---HHHHHHHHHHHHCCCccce---EEeccccceEEEEeCCCceEEEE
Confidence 478999999743 58999999999999876 8999999999999965410 022 4456778888988888899
Q ss_pred EEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhh
Q 010868 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFK 475 (498)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~ 475 (498)
|.+.+ .+... .....|+.+++|++++++.++.+++.++++++.+.+..
T Consensus 88 f~~~~--~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l 135 (138)
T 1ktg_A 88 WLAKL--NNPDD---VQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFL 135 (138)
T ss_dssp EEEEE--CSCCC---CCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred EEEEe--cCCcc---cCCCchhcEeEeccHHHHHHhhccchHHHHHHHHHHHh
Confidence 98864 22111 12335677899999999999999999999999887654
No 44
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.54 E-value=1.4e-14 Score=130.39 Aligned_cols=107 Identities=20% Similarity=0.193 Sum_probs=83.6
Q ss_pred cCCCeEEEEecCC---CCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC-eE
Q 010868 342 QPDGVFILVKRRD---EGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH-IR 417 (498)
Q Consensus 342 ~~~gkvLI~KRp~---~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH-~~ 417 (498)
+.+|+||+.+|.. .+.++|+|+||||.++.+|+. ++|+.||+.||+|+.+. ..+.++.+.|.|+| .+
T Consensus 22 ~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~---~~aa~RE~~EEtGl~~~------~~~~l~~~~~~~~~~~~ 92 (159)
T 1sjy_A 22 NERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENP---QDAAVREACEETGLRVR------PVKFLGAYLGRFPDGVL 92 (159)
T ss_dssp CTTCCEEEEEESCC----CCCCCEECSEEECCTTSCH---HHHHHHHHHHHHSCCEE------EEEEEEEEEEECTTSCE
T ss_pred eCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCH---HHHHHHHHHHHHCccce------eeEEEEEEecccCCCce
Confidence 5578999999986 677899999999999999876 79999999999999886 56788889999998 78
Q ss_pred EEEEEEEEEEEEeCCccccccc-ccCCCCceeeecCCCcCCCCCC
Q 010868 418 LKVHVELLVLCIKGGIDKWVEK-QDKGTLSWKCVDGGTLASMGLT 461 (498)
Q Consensus 418 l~l~~~~~~~~~~g~~~~~~~~-~~~e~~~~~Wv~~~eL~~~~fp 461 (498)
..+++|.+.+ ..+... .+ ...|..++.|++.+++.++..+
T Consensus 93 ~~~~~f~~~~-~~~~~~---~~~~~~E~~~~~W~~~~el~~~~~~ 133 (159)
T 1sjy_A 93 ILRHVWLAEP-EPGQTL---APAFTDEIAEASFVSREDFAQLYAA 133 (159)
T ss_dssp EEEEEEEEEE-CSSCCC---CCCCCSSEEEEEEECHHHHHHHHHT
T ss_pred EEEEEEEEEc-cCCCcc---ccCCCCceeEEEEecHHHHHHhhhc
Confidence 8888888864 222101 12 3356778999999998776443
No 45
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.53 E-value=2.5e-14 Score=127.99 Aligned_cols=119 Identities=13% Similarity=-0.013 Sum_probs=91.1
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC--CeEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--HIRLK 419 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs--H~~l~ 419 (498)
..+|+||+.||...+. +|+|+||||+++.+|++ ++|+.||+.||+|+++. ..+.++.+.|.++ +.+..
T Consensus 16 ~~~~~vLl~~r~~~~~-~~~w~lPgG~ve~gE~~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 85 (153)
T 2b0v_A 16 EQDDKYLLVEEIPRGT-AIKLNQPAGHLEPGESI---IQACSREVLEETGHSFL------PEVLTGIYHWTCASNGTTYL 85 (153)
T ss_dssp EETTEEEEEEECSSSS-CCEEECSEEECCTTSCH---HHHHHHHHHHHHSEEEE------EEEEEEEEEEEETTTTEEEE
T ss_pred eeCCEEEEEEEcCCCC-CCeEECCCcCcCCCCCH---HHHHHHHHHHhhCcEec------cceEEEEEEEeCCCCCcEEE
Confidence 3578999999998887 99999999999999876 89999999999999876 5667777778887 45566
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC---CCChHHHHHHHHHHhh
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM---GLTSGVRKVYTMVQKF 474 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~---~fp~a~~kil~~L~~~ 474 (498)
+++|.+.+ ..+... .....+..+++|++.+++.++ .+++..++++..+...
T Consensus 86 ~~~f~~~~-~~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~~~~~~ 139 (153)
T 2b0v_A 86 RFTFSGQV-VSFDPD---RKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYHAG 139 (153)
T ss_dssp EEEEEEEE-EEECTT---SCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHHTT
T ss_pred EEEEEEEe-CCCCCC---CCCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHHHHHhC
Confidence 67777764 222110 122346678999999999884 5677788877776554
No 46
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.50 E-value=6.4e-14 Score=126.25 Aligned_cols=119 Identities=13% Similarity=0.088 Sum_probs=86.9
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|+||+.||.... ++|.|+||||+++.+|++ ++|+.||+.||+|+++. ..+.++.+.|.+.+ ..+
T Consensus 29 ~~~~~vLl~~r~~~~-~~~~w~~PgG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~---~~~ 95 (156)
T 3gg6_A 29 SEQDEVLLIQEAKRE-CRGSWYLPAGRMEPGETI---VEALQREVKEEAGLHCE------PETLLSVEERGPSW---VRF 95 (156)
T ss_dssp CTTSEEEEEECCCTT-STTCEECSEEECCTTCCH---HHHHHHHHHHHHCEEEE------EEEEEEEEESSTTE---EEE
T ss_pred eCCCEEEEEEecCCC-CCCEEECCeeeccCCCCH---HHHHHHHHHHhhCceeE------eeeEEEEEcCCCCE---EEE
Confidence 568899999998654 899999999999999876 89999999999999876 45556555543332 345
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhh
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFK 475 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~ 475 (498)
+|.+.+ ..+... .......|+.+++|++.+++.+.-.+...+.++.......
T Consensus 96 ~f~~~~-~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~ 147 (156)
T 3gg6_A 96 VFLARP-TGGILK-TSKEADAESLQAAWYPRTSLPTPLRAHDILHLVELAAQYR 147 (156)
T ss_dssp EEEEEE-EEECCC-CGGGCSSSCSEEEEEETTSCCSSBSCTHHHHHHHHHHHHH
T ss_pred EEEEEe-eCCeec-cCCCCCcceeeeEEEcHHHCcccccchhHHHHHHHHHHHh
Confidence 667654 233211 1112335778899999999999888888888877655443
No 47
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.49 E-value=1.3e-14 Score=132.93 Aligned_cols=121 Identities=9% Similarity=0.015 Sum_probs=92.9
Q ss_pred cCCCeEEEEecC-CCCCCCcccc-cCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEE-EEcCCeEE
Q 010868 342 QPDGVFILVKRR-DEGLLAGLWE-FPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV-HIFSHIRL 418 (498)
Q Consensus 342 ~~~gkvLI~KRp-~~gllaGLWE-FPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~-H~fsH~~l 418 (498)
+.+|+||+.||. ..+.++|+|+ ||||.++.+|++ .+|+.||+.||+|+++... ....++.+. |.++|..
T Consensus 43 ~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~---~~aa~REl~EEtGl~~~~~----~l~~~~~~~~~~~~~~~- 114 (171)
T 1q27_A 43 NSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETY---EEAFRREAREELNVEIDAL----SWRPLASFSPFQTTLSS- 114 (171)
T ss_dssp ETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCH---HHHHHHHHHHHHSCTTSSS----CEEEEEEECSSSSCCSS-
T ss_pred CCCCeEEEEEecCCCCCCCCccccccCccccCCCCH---HHHHHHHHHHHHCCccccc----ceEEEEEEeccCCCCcc-
Confidence 567899999995 4567899999 999999999876 7999999999999988621 124566666 7777765
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcC--CCCCChHHHHHHHHHHhhhh
Q 010868 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA--SMGLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 419 ~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~--~~~fp~a~~kil~~L~~~~~ 476 (498)
.+++|.+.. .+.. .+...++.+++|++.+++. .++++.++.+++..|.....
T Consensus 115 ~~~~f~~~~--~~~~----~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~l~~~~~ 168 (171)
T 1q27_A 115 FMCVYELRS--DATP----IFNPNDISGGEWLTPEHLLARIAAGEAAKGDLAELVRRCYR 168 (171)
T ss_dssp EEEEEEEEC--CCCC----CSCTTTCSCCEEECHHHHHHHHHHHSSCCHHHHHHHHHHHT
T ss_pred EEEEEEEEE--CCcc----ccCchhhheEEEecHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 567777753 3311 2234577889999999999 67889999999999877643
No 48
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.47 E-value=1.2e-13 Score=124.57 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=73.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccE-----EEEcCCe
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF-----VHIFSHI 416 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v-----~H~fsH~ 416 (498)
+.+|+||+.+|. +|+|+||||+++.+|++ ++|+.||+.||+|+++. ....++.+ .|.|++.
T Consensus 30 ~~~~~vLL~~r~-----~~~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 95 (153)
T 3eds_A 30 NEQGEILFQYPG-----GEYWSLPAGAIELGETP---EEAVVREVWEETGLKVQ------VKKQKGVFGGKEYRYTYSNG 95 (153)
T ss_dssp CTTCCEEEECC--------CBBCSEEECCTTSCH---HHHHHHHHHHHHCEEEE------EEEEEEEECSGGGEEECTTS
T ss_pred cCCCeEEEEEcC-----CCcEECCccccCCCCCH---HHHHHHHHHHHHCccce------eeeEEEEecccceeeecCCC
Confidence 567899999997 89999999999999876 89999999999999876 44555544 7888885
Q ss_pred E---EEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHH
Q 010868 417 R---LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGV 464 (498)
Q Consensus 417 ~---l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~ 464 (498)
. ..+++|.+.+ ..+.. .....|..+++|++++++.++.+|-+.
T Consensus 96 ~~~~~~~~~f~~~~-~~~~~----~~~~~E~~~~~W~~~~el~~l~~~~p~ 141 (153)
T 3eds_A 96 DEVEYIVVVFECEV-TSGEL----RSIDGESLKLQYFSLSEKPPLALPYPD 141 (153)
T ss_dssp CEEEEEEEEEEEEE-EEECC----C-------CEEEECGGGCCCBSSCCCG
T ss_pred CeEEEEEEEEEEEe-cCCcc----ccCCCcEEEEEEECHHHCchhcccCcc
Confidence 3 3567777764 23311 123356778999999999998876544
No 49
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.46 E-value=2.1e-13 Score=127.74 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=89.5
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVE 423 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~ 423 (498)
+|+|||.||.... .+|+|+||||.++.+|++ ++|+.||+.||+|+++. ....+. .|.|++.+..+++|
T Consensus 50 ~~~vLL~~r~~~~-~~g~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~--~~~~~~~~~~~~~f 117 (189)
T 3cng_A 50 ENKVLLCKRAIAP-YRGKWTLPAGFMENNETL---VQGAARETLEEANARVE------IRELYA--VYSLPHISQVYMLF 117 (189)
T ss_dssp TTEEEEEEESSSS-STTCEECSEEECCTTCCH---HHHHHHHHHHHHCCCEE------EEEEEE--EEEEGGGTEEEEEE
T ss_pred CCEEEEEEccCCC-CCCeEECceeeccCCCCH---HHHHHHHHHHHHCCccc------cceeEE--EEecCCCcEEEEEE
Confidence 7899999998765 489999999999999876 89999999999999875 333332 37788887778888
Q ss_pred EEEEEEeCCcccccccccCCCCceeeecCCCcC--CCCCChHHHHHHHHHHhhhhcccccCCCcc
Q 010868 424 LLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA--SMGLTSGVRKVYTMVQKFKQKRLTTNSIPE 486 (498)
Q Consensus 424 ~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~--~~~fp~a~~kil~~L~~~~~~~~~~~~~~~ 486 (498)
.+.+ ..+ .. ....|..+++|++++++. .+.+|.....|...+..... ..||+
T Consensus 118 ~~~~-~~~-~~----~~~~E~~~~~W~~~~el~~~~l~~~~~~~~l~~~l~~~~~-----~~~~~ 171 (189)
T 3cng_A 118 RAKL-LDL-DF----FPGIESLEVRLFGEQEIPWNDIAFRVIHDPLKRYMEERHH-----GQPAF 171 (189)
T ss_dssp EEEE-CCS-CC----CCCTTEEEEEEECTTTCCGGGBSCHHHHHHHHHHHHHHHH-----SSCCC
T ss_pred EEEe-CCC-cc----CCCccceeEEEECHHHcCcccccChHHHHHHHHHHHhccC-----CCcce
Confidence 8864 222 11 113566789999999998 78888777666665555433 45665
No 50
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.45 E-value=2.2e-13 Score=129.69 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=86.1
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEE---EEcC--CeEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV---HIFS--HIRL 418 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~---H~fs--H~~l 418 (498)
+|+||+.||. .|.|+||||+++.+|++ .+|+.||+.||+|+++. ....++.+. |.++ +.++
T Consensus 80 ~~~vLLvrr~-----~g~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~~~ 145 (206)
T 3o8s_A 80 EDKILLVQEN-----DGLWSLPGGWCDVDQSV---KDNVVKEVKEEAGLDVE------AQRVVAILDKHKNNPAKSAHRV 145 (206)
T ss_dssp TTEEEEEECT-----TSCEECSEEECCTTSCH---HHHHHHHHHHHHCEEEE------EEEEEEEEEHHHHCC-----CE
T ss_pred CCEEEEEEec-----CCeEECCeeccCCCCCH---HHHHHHHHHHHHCCcce------eeeEEEEEeccccCCCCCCceE
Confidence 6899999997 78999999999999876 89999999999999875 445555544 3444 3445
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhh
Q 010868 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 419 ~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~ 476 (498)
...+|.|.+ ..+.. .+ ..|..+++|++.++|.++.+++..++++..+.+...
T Consensus 146 ~~~~~~~~~-~~~~~----~~-~~E~~~~~w~~~~el~~l~~~~~~~~~l~~~~~~~~ 197 (206)
T 3o8s_A 146 TKVFILCRL-LGGEF----QP-NSETVASGFFSLDDLPPLYLGKNTAEQLALCLEASR 197 (206)
T ss_dssp EEEEEEEEE-EEECC----CC-CSSCSEEEEECTTSCCCBCTTTCCHHHHHHHHHHHH
T ss_pred EEEEEEEEe-cCCee----cC-CCCceEEEEEeHHHhhhccCCCchHHHHHHHHHHHH
Confidence 566777764 23311 11 257889999999999999999999999988877654
No 51
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.45 E-value=2.4e-14 Score=137.37 Aligned_cols=120 Identities=11% Similarity=0.047 Sum_probs=82.0
Q ss_pred cCCCeEEEEecCCCC---CCCccccc-CccccCCCCC--h-hhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEc-
Q 010868 342 QPDGVFILVKRRDEG---LLAGLWEF-PSIILDGETD--I-TTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF- 413 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g---llaGLWEF-Pggkve~~e~--~-e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~f- 413 (498)
..+|+||+.||+.++ .++|.|+| |||++|.||+ + ++.++|+.||+.||+|+++. ....++.+.+.+
T Consensus 76 ~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~------~~~~ig~~~~~~~ 149 (211)
T 3e57_A 76 MDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLR------ELEFLGLINSSTT 149 (211)
T ss_dssp EETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEE------EEEEEEEEECCSS
T ss_pred EECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeee------ccEEEEEEeccCC
Confidence 358999999998764 37889999 9999999987 3 56789999999999999876 566777766633
Q ss_pred CCeEEEE-EEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC--CCChHHHHHHHHHHhh
Q 010868 414 SHIRLKV-HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM--GLTSGVRKVYTMVQKF 474 (498)
Q Consensus 414 sH~~l~l-~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~--~fp~a~~kil~~L~~~ 474 (498)
+...+++ .+|.|+. ..+ .+...++.+++|+++++|.++ .|.+-..-+++.|...
T Consensus 150 ~~~~~~l~~~f~~~~-~~g------~~~~~E~~~~~W~~~~eL~~~~~~le~wS~lvl~~l~~~ 206 (211)
T 3e57_A 150 EVSRVHLGALFLGRG-KFF------SVKEKDLFEWELIKLEELEKFSGVMEGWSKISAAVLLNL 206 (211)
T ss_dssp HHHHTEEEEEEEEEE-EEE------EESCTTTCEEEEEEHHHHHHHGGGCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEEEEe-CCc------eeCCCCeEEEEEEEHHHHHHhHhhccchhHHHHHHHHHH
Confidence 2222222 3577764 333 234467788999999999987 6766666677666544
No 52
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.44 E-value=4.8e-13 Score=121.11 Aligned_cols=112 Identities=11% Similarity=-0.102 Sum_probs=77.3
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccc----------------
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVG---------------- 407 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~---------------- 407 (498)
+|+||+.||.. +|.|+||||+++.||++ ++|+.||+.||+|+++. ....++
T Consensus 16 ~~~vLL~~r~~----~g~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 82 (159)
T 3f6a_A 16 KDKVLLHLHKK----AKKMLPLGGHIEVNELP---EEACIREAKEEAGLNVT------LYNPIDINLKKSCDLSGEKLLI 82 (159)
T ss_dssp TTEEEEEECSS----SCCEECEEEECCTTCCH---HHHHHHHHHHHHCCCCE------ECCCCCHHHHHHHHHTTCEEEC
T ss_pred CCEEEEEEcCC----CCeEECCccCccCCCCH---HHHHHHHHHHHhCCCce------eccccccccccccccccccccc
Confidence 78999999974 68999999999999876 89999999999999886 223332
Q ss_pred ----cEEEEcCCeEEEE-EEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHH-HHHHHHh
Q 010868 408 ----EFVHIFSHIRLKV-HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRK-VYTMVQK 473 (498)
Q Consensus 408 ----~v~H~fsH~~l~l-~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~k-il~~L~~ 473 (498)
...|.|+..+..+ .+|.+.. ..+ .. .+...|+.+++|++++++.++++.+++.. +...+.+
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~f~~~~-~~~-~~---~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 149 (159)
T 3f6a_A 83 NPIHTILGDVSPNHSHIDFVYYATT-TSF-ET---SPEIGESKILKWYSKEDLKNAHNIQENILVMATEALD 149 (159)
T ss_dssp CCSEEEEECSSSSSCEEEEEEEEEC-SCS-CC---CCCTTSCCCEEEECSSSSTTCSSSCHHHHHHHHHHHH
T ss_pred CccccccccCCCCceEEEEEEEEEe-CCC-Cc---CCCCCcccceEEeeHHHHhhCcCCChhHHHHHHHHHH
Confidence 2244444333333 4566642 222 11 22346788999999999999995555554 4444433
No 53
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.44 E-value=2.8e-13 Score=121.10 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=86.4
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCccccccccccc------EEEEcCC
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGE------FVHIFSH 415 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~------v~H~fsH 415 (498)
+.+++||+.||... |.|+||||.++.+|++ ++|+.||+.||+|+++... ...+.. +.|.|++
T Consensus 17 ~~~~~vLl~~r~~~----g~w~~PgG~ve~gE~~---~~aa~REl~EEtGl~~~~~-----~~~~~~~~~~~~~~~~~~~ 84 (149)
T 3son_A 17 EANYQFGVLHRTDA----DVWQFVAGGGEDEEAI---SETAKRESIEELNLDVDVK-----MYSLDSHASIPNFHFSFNK 84 (149)
T ss_dssp SSSEEEEEEEESSS----SCEECEEEECCTTCCH---HHHHHHHHHHHHTCCSCCC-----EEEEEEEEEEEGGGTCSSS
T ss_pred CCCeEEEEEEEcCC----CCEeCCccccCCCCCH---HHHHHHHHHHHhCCCcccc-----eEEEEeeecccceeeccCC
Confidence 45689999999864 8999999999999877 8999999999999998621 001111 1223333
Q ss_pred -eEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhh
Q 010868 416 -IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 416 -~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~ 476 (498)
.+..+++|.+.+ ...... ... ..|+.+++|++++++.++.+++.++.++..+.+...
T Consensus 85 ~~~~~~~~f~~~~--~~~~~~-~~~-~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~ 142 (149)
T 3son_A 85 PYVVPEYCFAIDL--TSCSYQ-VTL-SLEHSELRWVSYESAIQLLEWDSNKTALYELNERLK 142 (149)
T ss_dssp CSEEEEEEEEEEC--TTTGGG-CCC-CTTEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred ceEeEEEEEEEEc--CCCCCc-ccC-CCceeeEEEeCHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 456677888753 310001 011 367888999999999999999999999999887754
No 54
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.44 E-value=2.7e-13 Score=122.65 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=77.4
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccE--------------
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF-------------- 409 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v-------------- 409 (498)
+|+||+.||+. +|+|+||||+++.+|++ ++|+.||+.||+|+++. ....++.+
T Consensus 11 ~~~vLL~~r~~----~g~W~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 77 (156)
T 1k2e_A 11 NGKVLLVKHKR----LGVYIYPGGHVEHNETP---IEAVKREFEEETGIVVE------PIGFTYGIIDENAVERPMPLVI 77 (156)
T ss_dssp TTEEEEEECTT----TCSEECSEEECCTTCCH---HHHHHHHHHHHHSEEEE------ECCCCCCCBSSSEEECCCCSEE
T ss_pred CCEEEEEEEcC----CCcEECCeeecCCCCCH---HHHHHHHHHHHHCCcce------eccceeeeccccccccccccee
Confidence 78999999975 68999999999999876 89999999999999875 22222211
Q ss_pred ---EEEcCC-eEEEEE-EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhh
Q 010868 410 ---VHIFSH-IRLKVH-VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKF 474 (498)
Q Consensus 410 ---~H~fsH-~~l~l~-~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~ 474 (498)
.+.|+. .+.++. +|.+.. .+ .++.+++|++++++.++++++.++++++.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~f~~~~--~~----------~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 135 (156)
T 1k2e_A 78 LEEVVKYPEETHIHFDLIYLVKR--VG----------GDLKNGEWIDVREIDRIETFPNVRKVVSLALST 135 (156)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEE--EE----------ECCCSCEEEEGGGGGGSCBSTTHHHHHHHHHHH
T ss_pred eeeeecCCCCceEEEEEEEEEEe--cC----------CcEeeeEEeCHHHHhcCCCChHHHHHHHHHHHH
Confidence 112332 233333 244542 11 246789999999999999999999999887654
No 55
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.41 E-value=2.4e-12 Score=118.24 Aligned_cols=109 Identities=14% Similarity=0.061 Sum_probs=80.3
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
..+|++|+.+|. +|.|+||||+++.||++ ++|+.||+.||+|+++. ..+.+. .|.+++ ...+
T Consensus 24 ~~~~~vLL~~r~-----~g~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~l~--~~~~~~--~~~~ 85 (163)
T 3f13_A 24 EMPDGVLVTASR-----GGRYNLPGGKANRGELR---SQALIREIREETGLRIN------SMLYLF--DHITPF--NAHK 85 (163)
T ss_dssp EETTEEEEEECC--------BBCSEEECCTTCCH---HHHHHHHHHHHHCCCCC------EEEEEE--EEECSS--EEEE
T ss_pred EeCCEEEEEEEC-----CCeEECCceeCCCCCCH---HHHHHHHHHHHHCcccc------eeEEEE--EEecCC--eEEE
Confidence 457899999986 58999999999999876 89999999999999986 444443 355555 5567
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhh
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~ 476 (498)
+|.|. +.+.. .+. .|..+++|++ .+...++++++++.+++.+.....
T Consensus 86 ~f~~~--~~~~~----~~~-~E~~~~~W~~-~~~~~~~l~~~~~~il~~~~~~~~ 132 (163)
T 3f13_A 86 VYLCI--AQGQP----KPQ-NEIERIALVS-SPDTDMDLFVEGRAILRRYARLRN 132 (163)
T ss_dssp EEEEE--C-CCC----CCC-TTCCEEEEES-STTCSSCBCHHHHHHHHHHHHHTT
T ss_pred EEEEE--ECCcC----ccC-CCceEEEEEC-cccccCCCCHHHHHHHHHHHHhhh
Confidence 77775 34421 111 3678899999 666788999999999999877644
No 56
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.40 E-value=9.3e-13 Score=118.01 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=83.8
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEE-E
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLK-V 420 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~-l 420 (498)
..+|+||+.||. ...+|.|+||||+++.+|++ ++|+.||+.||+|+++. ..+.++.+.|.+++.... .
T Consensus 13 ~~~~~vLl~~r~--~~~~~~w~~PgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 81 (153)
T 3shd_A 13 HAEGKFLVVEET--INGKALWNQPAGHLEADETL---VEAAARELWEETGISAQ------PQHFIRMHQWIAPDKTPFLR 81 (153)
T ss_dssp EETTEEEEEEEE--ETTEEEEECSEEECCTTCCH---HHHHHHHHHHHHCCCCC------CCEEEEEEEECCTTSCCEEE
T ss_pred EeCCEEEEEEec--CCCCCCEECCeEEeCCCCCH---HHHHHHHHHHHHCcccc------cCcEEEEEEEecCCCceEEE
Confidence 457899999997 34589999999999999876 89999999999999987 556777777877655433 4
Q ss_pred EEEEEEEEEeCCcccccccccCCCCceeeecCCCcCC--CCCChHHHHHHHHHHhh
Q 010868 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS--MGLTSGVRKVYTMVQKF 474 (498)
Q Consensus 421 ~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~--~~fp~a~~kil~~L~~~ 474 (498)
++|.+.+ .+... ..+...|+.+++|++.+++.. ....+..+.++..+...
T Consensus 82 ~~f~~~~--~~~~~--~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~~~ 133 (153)
T 3shd_A 82 FLFAIEL--EQICP--TQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSG 133 (153)
T ss_dssp EEEEEEC--SSCCC--CCCCSTTCCEEEEECHHHHHTCSCBSSTHHHHHHHHHHHT
T ss_pred EEEEEEc--cccCc--CCCCcccceeeEEecHHHhhccccccCchHHHHHHHHHhC
Confidence 6666653 22111 123446788999999999922 12345555666665544
No 57
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.39 E-value=3.2e-12 Score=112.82 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=77.2
Q ss_pred CCCe--EEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC-----
Q 010868 343 PDGV--FILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH----- 415 (498)
Q Consensus 343 ~~gk--vLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH----- 415 (498)
.+|+ ||+.||...+ +.|+||||+++.+|++ ++|+.||+.||+|+++. .... .+.|+|
T Consensus 21 ~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gE~~---~~aa~RE~~EEtGl~~~------~~~~----~~~~~~~~~~~ 84 (139)
T 2yyh_A 21 GENFKGIVLIERKYPP---VGLALPGGFVEVGERV---EEAAAREMREETGLEVR------LHKL----MGVYSDPERDP 84 (139)
T ss_dssp TTEEEEEEEEEECSSS---CSEECCEEECCTTCCH---HHHHHHHHHHHHCCCCE------EEEE----EEEECCTTSCT
T ss_pred CCCcEEEEEEEecCCC---CcEECccccCCCCCCH---HHHHHHHHHHHHCCCcc------cceE----EEEECCCCcCC
Confidence 5778 9999997643 3399999999999876 89999999999999875 3333 344444
Q ss_pred -eEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcC--CCCCChHHHHHHHHHHh
Q 010868 416 -IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA--SMGLTSGVRKVYTMVQK 473 (498)
Q Consensus 416 -~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~--~~~fp~a~~kil~~L~~ 473 (498)
.++.+++|.+.+ .+.. ....++.+++|++.+++. .+.++ ++++++.+.+
T Consensus 85 ~~~~~~~~f~~~~--~~~~-----~~~~e~~~~~W~~~~el~~~~l~~~--~~~~l~~~l~ 136 (139)
T 2yyh_A 85 RAHVVSVVWIGDA--QGEP-----KAGSDAKKVKVYRLEEIPLDKLVFD--HKKIILDFLK 136 (139)
T ss_dssp TSCEEEEEEEEEE--ESCC-----CCCTTEEEEEEECTTSCCGGGBCTT--HHHHHHHHHH
T ss_pred CceEEEEEEEEec--CCcc-----CCCCCcceEEEEEHHHCCHhhcCCC--HHHHHHHHHh
Confidence 456677888764 4421 123466789999999999 77776 6777766543
No 58
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.38 E-value=3.4e-13 Score=121.16 Aligned_cols=106 Identities=11% Similarity=0.011 Sum_probs=78.4
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeE----E
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIR----L 418 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~----l 418 (498)
.+|+||+.|| +|.|+||||.++.+|+. ++|+.||+.||+|+++. ..+.++.+.|.|++.. .
T Consensus 28 ~~~~vLl~~r------~~~w~lPgG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~ 92 (154)
T 2pqv_A 28 QNHKLLVTKD------KGKYYTIGGAIQVNEST---EDAVVREVKEELGVKAQ------AGQLAFVVENRFEVDGVSYHN 92 (154)
T ss_dssp ETTEEEEEEE------TTEEECEEEECBTTCCH---HHHHHHHHHHHHCCCEE------EEEEEEEEEEEEEETTEEEEE
T ss_pred ECCEEEEEec------CCeEECcccCcCCCCCH---HHHHHHHHHHHhCCeee------eceEEEEEeeeecCCCCcceE
Confidence 3789999999 68999999999999876 89999999999999876 5566777777776432 2
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHH
Q 010868 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRK 466 (498)
Q Consensus 419 ~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~k 466 (498)
..++|.+.+ .++.... .....+..+++|++++++.+++|++++.+
T Consensus 93 ~~~~f~~~~--~~~~~~~-~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 137 (154)
T 2pqv_A 93 IEFHYLVDL--LEDAPLT-MQEDEKRQPCEWIDLDKLQNIQLVPVFLK 137 (154)
T ss_dssp EEEEEEEEE--SSCCCSE-EEETTEEEEEEEEEGGGGGGSCEESTTHH
T ss_pred EEEEEEEEe--cCCCCcc-cCCCCceeeEEEeEHHHHhhcCcCcHHHH
Confidence 234666653 2221110 01223467899999999999999988765
No 59
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.34 E-value=1e-12 Score=122.87 Aligned_cols=120 Identities=9% Similarity=0.012 Sum_probs=90.2
Q ss_pred cCCCeEEEEecCC-CCCCCccccc-CccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccc-cccccEEEE--cCC-
Q 010868 342 QPDGVFILVKRRD-EGLLAGLWEF-PSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILR-EDVGEFVHI--FSH- 415 (498)
Q Consensus 342 ~~~gkvLI~KRp~-~gllaGLWEF-Pggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~-~~l~~v~H~--fsH- 415 (498)
+.+|+||+.+|.. .+.++|+|+| |||.++.+|++ ++|+.||+.||+|+++. .. ..++.+.|. |++
T Consensus 41 ~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~ 111 (190)
T 1hzt_A 41 NAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---EDAVIRRCRYELGVEIT------PPESIYPDFRYRATDPSG 111 (190)
T ss_dssp CTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCH---HHHHHHHHHHHHCCCBS------CCEEEETTCEEEEECTTS
T ss_pred cCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCH---HHHHHHHHHHHHCCCch------hhheeeeeEEEEeeCCCC
Confidence 5578999999974 4578999999 99999999876 89999999999999886 33 556666554 342
Q ss_pred --eEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC------CCChHHHHHHHHHHhhhh
Q 010868 416 --IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM------GLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 416 --~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~------~fp~a~~kil~~L~~~~~ 476 (498)
.+..+++|.+. +.+.. .+...|..+++|++.+++.++ .|++..+.+++.+.....
T Consensus 112 ~~~~~~~~~f~~~--~~~~~----~~~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~~~~ 174 (190)
T 1hzt_A 112 IVENEVCPVFAAR--TTSAL----QINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARKR 174 (190)
T ss_dssp CEEEEECCEEEEE--BCSCC----CCCTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSHHHHHH
T ss_pred CcceEEEEEEEEe--cCCCC----cCCccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHHHHHHh
Confidence 24445677665 33321 123356778999999999765 499999999999887755
No 60
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.33 E-value=2.9e-12 Score=121.79 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=82.8
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEc---C--CeEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF---S--HIRL 418 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~f---s--H~~l 418 (498)
+|+||+.||.. .|.|+||||+++.||++ .+|+.||+.||+|+++. ....++.+.+.+ + ..++
T Consensus 78 ~~~vLLv~r~~----~g~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~v~------~~~~l~~~~~~~~~~~~~~~~~ 144 (205)
T 3q1p_A 78 NEKLLFVKEKS----DGKWALPGGWADVGYTP---TEVAAKEVFEETGYEVD------HFKLLAIFDKEKHQPSPSATHV 144 (205)
T ss_dssp TTEEEEEEC-------CCEECSEEECCTTCCH---HHHHHHHHHHHHSEEEE------EEEEEEEEEHHHHSCCCCSSCE
T ss_pred CCEEEEEEEcC----CCcEECCcCccCCCCCH---HHHHHHHHHHHHCCccc------cceEEEEEeccccCCCCCCceE
Confidence 78999999974 67999999999999877 89999999999999875 344444433211 1 2344
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhh
Q 010868 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 419 ~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~ 476 (498)
...+|.|.+ ..+.. .+ ..|..+++|+++++|.++.+.+.++.++..+.....
T Consensus 145 ~~~~~~~~~-~~~~~----~~-~~E~~~~~w~~~~el~~l~~~~~~~~~i~~~~~~~~ 196 (205)
T 3q1p_A 145 YKIFIGCEI-IGGEK----KT-SIETEEVEFFGENELPNLSIARNTEDQIKEMFAYMK 196 (205)
T ss_dssp EEEEEEEEE-EEECC----CC-CTTSCCEEEECTTSCCCBCTTTCCHHHHHHHHHHHH
T ss_pred EEEEEEEEe-cCCcc----CC-CCcceEEEEEeHHHhhhcCCCccHHHHHHHHHHHHh
Confidence 456677764 23311 11 257889999999999999999999998888766544
No 61
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.32 E-value=4.4e-12 Score=114.52 Aligned_cols=120 Identities=10% Similarity=0.033 Sum_probs=82.7
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEE----EEcCCeE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV----HIFSHIR 417 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~----H~fsH~~ 417 (498)
+.+++||+.||..+ .|.|+||||.+++||++ .+|+.||+.||+|+++. ....+..+. +......
T Consensus 21 n~~~e~LL~~r~~~---~~~W~lPgG~ve~gEt~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 88 (155)
T 3u53_A 21 NNAIEFLLLQASDG---IHHWTPPKGHVEPGEDD---LETALRETQEEAGIEAG------QLTIIEGFKRELNYVARNKP 88 (155)
T ss_dssp SCSEEEEEEEESSS---SCCEECSEEECCSSCCH---HHHHHHHHHHHHCCCGG------GEEEEEEEEEEEEEEETTEE
T ss_pred CCCcEEEEEEecCC---CCCEECCeeeccCCCCH---HHHHHHHHHHHHCCccc------cceeeeeEeeeeecCCCcce
Confidence 55679999999865 37899999999999877 89999999999999876 333443332 2233444
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhhc
Q 010868 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQK 477 (498)
Q Consensus 418 l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~~ 477 (498)
....+|.+.+ ..+. .. .....|+.+++|++.+++.++...+.++.+++...+...+
T Consensus 89 ~~~~~~~~~~-~~~~-~~--~~~~~E~~~~~W~~~~ea~~~~~~~~~~~~L~~a~~~L~~ 144 (155)
T 3u53_A 89 KTVIYWLAEV-KDYD-VE--IRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFLCS 144 (155)
T ss_dssp EEEEEEEEEE-SCTT-CC--CCCCTTEEEEEEECHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEE-eccC-Cc--cCCCcceeEEEEeEHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 4455555542 2221 11 1123477889999999988776667788888776665543
No 62
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.31 E-value=1.7e-12 Score=121.15 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=84.5
Q ss_pred CCeEEEEecCC------CCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC--C
Q 010868 344 DGVFILVKRRD------EGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--H 415 (498)
Q Consensus 344 ~gkvLI~KRp~------~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs--H 415 (498)
+++||+.+|.. .+..+|.|+||||.++.||++ ++|+.||+.||+|+++. ..+.++.+.+.+. +
T Consensus 45 ~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~ 115 (187)
T 3i9x_A 45 TLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESA---EQAAERELEEETSLTDI------PLIPFGVFDKPGRDPR 115 (187)
T ss_dssp EEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCH---HHHHHHHHHHHHCCCSC------CCEEEEEECCTTSSTT
T ss_pred CCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCH---HHHHHHHHHHHHCCCCc------ceEEEEEEcCCccCCC
Confidence 46999999953 467899999999999999876 89999999999999886 4455555443332 1
Q ss_pred eEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhh
Q 010868 416 IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 416 ~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~ 476 (498)
..+...+|.+.+ ....... .....|..+++|++++++..++++..++.+++...+...
T Consensus 116 ~~~~~~~~~~~~--~~~~~~~-~~~~~E~~~~~W~~~~el~~~~l~~~~~~il~~a~~~l~ 173 (187)
T 3i9x_A 116 GWIISRAFYAIV--PPEALEK-RAAGDDAAEIGLFPMTEALELPLAFDHLDMLKKAFSAIT 173 (187)
T ss_dssp SSEEEEEEEEEC--CHHHHHH-HHHSTTTTTEEEEEHHHHTTSCBSTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEE--cCcccCC-cCCCCceeEEEEEeHHHcccCCCCccHHHHHHHHHHHHH
Confidence 122233444322 2111000 123457788999999999999999999998887554433
No 63
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.28 E-value=3.8e-12 Score=116.68 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=74.7
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVE 423 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~ 423 (498)
+|+||+.+|...+..+|+|+||||.++++|++ ++|+.||+.||+|+ +. ....++.+.|..++.+..+++|
T Consensus 44 ~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~---~~aa~REl~EEtGl-~~------~~~~l~~~~~~~~~~~~~~~~f 113 (170)
T 1v8y_A 44 EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDP---LEAARRELAEQTGL-SG------DLTYLFSYFVSPGFTDEKTHVF 113 (170)
T ss_dssp TTEEEEEECCBTTTTBCCBBCSEEECCTTCCH---HHHHHHHHHHHHSE-EE------EEEEEEEEESCTTTBCCEEEEE
T ss_pred CCEEEEEEEEeCCCCCCEEECCccccCCCCCH---HHHHHHHHHHHHCC-Cc------CceeeEEEecCCCccccEEEEE
Confidence 78999999877778899999999999999876 89999999999999 65 4567777777666666667888
Q ss_pred EEEEEEeCCcccccccccCCCCceeeecCCCcCCC
Q 010868 424 LLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 424 ~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
.+.. ..+... .....|..++.|++.+++.++
T Consensus 114 ~~~~-~~~~~~---~~~~~E~~~~~W~~~~el~~~ 144 (170)
T 1v8y_A 114 LAEN-LKEVEA---HPDEDEAIEVVWMRPEEALER 144 (170)
T ss_dssp EEEE-EEECC-----------CEEEEECHHHHHHH
T ss_pred EEEe-ccccCC---CCCCCceEEEEEEEHHHHHHH
Confidence 8864 222111 123457788999999988664
No 64
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.28 E-value=1.4e-12 Score=117.57 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=75.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCccccccccc-ccEEEEcCCeE---
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDV-GEFVHIFSHIR--- 417 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l-~~v~H~fsH~~--- 417 (498)
+.+|+||+.||.. .+|+|+||||.++.+|+. ++|+.||+.||+|+++.. ....+ ..+.|.|++..
T Consensus 23 ~~~~~vLl~~r~~---~~g~w~~PgG~ve~gE~~---~~aa~RE~~EEtGl~~~~-----~~~~~~~~~~~~~~~~~~~~ 91 (165)
T 1f3y_A 23 NNDKKIFAASRLD---IPDAWQMPQGGIDEGEDP---RNAAIRELREETGVTSAE-----VIAEVPYWLTYDFPPKVREK 91 (165)
T ss_dssp CTTSCEEEEEETT---EEEEEECCEEECCTTCCH---HHHHHHHHHHHHCCCSEE-----EEEECSSCCBCCCCHHHHHH
T ss_pred CCCCcEEEEecCC---CCCcEECCeeccCCCCCH---HHHHHHHHHHhhCCChhh-----hhcccccceeeecCcccccc
Confidence 5678999999974 359999999999999876 899999999999998641 10011 11345555321
Q ss_pred -----------EEEEEEEEEEEEeCCccccccc-----ccCCCCceeeecCCCcCCCCCChHHHHHHHHHHh
Q 010868 418 -----------LKVHVELLVLCIKGGIDKWVEK-----QDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQK 473 (498)
Q Consensus 418 -----------l~l~~~~~~~~~~g~~~~~~~~-----~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (498)
-..++|.+.+ .+..... .. ...|+.+++|++++++.++.++- ++.+++.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~f~~~~--~~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~~~~-~~~~~~~~~~ 159 (165)
T 1f3y_A 92 LNIQWGSDWKGQAQKWFLFKF--TGQDQEI-NLLGDGSEKPEFGEWSWVTPEQLIDLTVEF-KKPVYKEVLS 159 (165)
T ss_dssp HGGGSCSSCCSCBEEEEEEEE--CSCGGGC-CCCCCSSSCCSEEEEEEECHHHHHHHBCGG-GHHHHHHHHH
T ss_pred ccccccccccCceEEEEEEEe--cCCcccc-cccCCCCCCChhheeEEecHHHHHHHhhhh-hHHHHHHHHH
Confidence 1345666653 3211110 11 13467889999999999977662 3444444433
No 65
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.28 E-value=1.2e-11 Score=126.30 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=86.8
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccE--EEEcC--C---
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF--VHIFS--H--- 415 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v--~H~fs--H--- 415 (498)
.+|+||+.||.... .+|+|+||||+++.||++ ++|+.||+.||+|+++. ....++.+ .|.|+ +
T Consensus 217 ~~~~vLL~~r~~~~-~~g~w~lPgG~ve~gEt~---~~aa~REl~EEtGl~v~------~~~~~~~~~~~~~~~~~~~~~ 286 (352)
T 2qjt_B 217 VNDHILMVQRKAHP-GKDLWALPGGFLECDETI---AQAIIRELFEETNINLT------HEQLAIAKRCEKVFDYPDRSV 286 (352)
T ss_dssp ETTEEEEEEESSSS-STTCEECSEEECCTTSCH---HHHHHHHHHHHHCCSCC------HHHHHHHEEEEEEECCTTSCT
T ss_pred ECCEEEEEEEcCCC-CCCeEECCCCcCCCCCCH---HHHHHHHHHHhhCCCcc------cchhcceeeeeEEecCCCCCC
Confidence 47899999998654 589999999999999876 89999999999999876 33333222 34443 2
Q ss_pred -eEEEEEEEEEEEEEeCCcccccccccCCCCceeeecC-CCcCCC--CCChHHHHHHHHHHhhh
Q 010868 416 -IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDG-GTLASM--GLTSGVRKVYTMVQKFK 475 (498)
Q Consensus 416 -~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~-~eL~~~--~fp~a~~kil~~L~~~~ 475 (498)
.++.+++|.+.+ ..+..... .....|..+++|++. +++.++ .+++.++++++.+.+..
T Consensus 287 ~~~~~~~~f~~~~-~~~~~~~~-~~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~~~~~~l 348 (352)
T 2qjt_B 287 RGRTISHVGLFVF-DQWPSLPE-INAADDAKDVKWISLGSNIKNICDRMLEDHYQIITILLEEC 348 (352)
T ss_dssp TSEEEEEEEEEEE-CSCSSCCC-CCCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHHHHHHT
T ss_pred CccEEEEEEEEEE-eCCCCCCc-cCCCccceEEEEecHHHHHHhhhhhhChhHHHHHHHHHHHh
Confidence 344566777753 22210010 012356778999999 999997 89999999999987754
No 66
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.28 E-value=1.2e-12 Score=121.16 Aligned_cols=104 Identities=14% Similarity=0.030 Sum_probs=80.3
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|+||+.+|...+..+|+|+||||.++.+|++ ++|+.||+.||+|+++. ....++.+.|.+++.+..++
T Consensus 50 ~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~ 120 (182)
T 2yvp_A 50 TERGTALLVRQYRHPTGKFLLEVPAGKVDEGETP---EAAARRELREEVGAEAE------TLIPLPSFHPQPSFTAVVFH 120 (182)
T ss_dssp CTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCH---HHHHHHHHHHHHCEECS------CEEECCCBCSCTTTBCCEEE
T ss_pred cCCCEEEEEEeccCCCCCcEEEeccccCCCCcCH---HHHHHHHHHHHhCCCcc------cEEEEEEEeCCCCccccEEE
Confidence 5678999999987777899999999999999876 89999999999999876 45677777777776666778
Q ss_pred EEEEEEEEe-CCcccccccccCCCCceeeecCCCcCCC
Q 010868 422 VELLVLCIK-GGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 422 ~~~~~~~~~-g~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
+|.+.. .. .+.. .....|+.++.|++.+++.++
T Consensus 121 ~f~~~~-~~~~~~~---~~~~~E~~~~~W~~~~el~~~ 154 (182)
T 2yvp_A 121 PFLALK-ARVVTPP---TLEEGELLESLELPLTEVYAL 154 (182)
T ss_dssp EEEECS-CEECSCC---CCCTTCCEEEEEEEHHHHHHH
T ss_pred EEEEec-cccCCCC---CCCCCceEEEEEEEHHHHHHH
Confidence 887752 11 1111 123467888999999988654
No 67
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.27 E-value=6.7e-12 Score=127.31 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=82.1
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccE--EEEcC--C---
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF--VHIFS--H--- 415 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v--~H~fs--H--- 415 (498)
.+|+||+.||... ..+|+|+||||.++.||++ ++|+.||+.||+|+++. ..+.++.+ .|.|+ +
T Consensus 212 ~~~~vLL~~r~~~-~~~g~w~lPgG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~ 281 (341)
T 2qjo_A 212 QAGHVLMVRRQAK-PGLGLIALPGGFIKQNETL---VEGMLRELKEETRLKVP------LPVLRGSIVDSHVFDAPGRSL 281 (341)
T ss_dssp ETTEEEEEECCSS-SSTTCEECSEEECCTTSCH---HHHHHHHHHHHHCCSSC------HHHHHHTEEEEEEECCTTSCT
T ss_pred eCCEEEEEEecCC-CCCCeEECCCCcCCCCCCH---HHHHHHHHhhhhCCccc------cccccccccceEEEeCCCCCC
Confidence 4789999999764 4589999999999999876 89999999999999886 44444432 34444 2
Q ss_pred -eEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC--CCChHHHHHHHHHHh
Q 010868 416 -IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM--GLTSGVRKVYTMVQK 473 (498)
Q Consensus 416 -~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~--~fp~a~~kil~~L~~ 473 (498)
.+..+++|.+.+ ..+.... .....|..+++|++.+++.++ ++++.++++++.+..
T Consensus 282 ~~~~~~~~f~~~~-~~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~il~~~~~ 339 (341)
T 2qjo_A 282 RGRTITHAYFIQL-PGGELPA--VKGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQHFVS 339 (341)
T ss_dssp TSCEEEEEEEEEC-CSSSCCC--CC------CEEEEEHHHHHHTGGGBCTTHHHHHHHHC-
T ss_pred CCcEEEEEEEEEe-cCCCcCc--cCCCCceeeEEEeeHHHHhhhhhhhchHHHHHHHHHHh
Confidence 234456777653 2221111 122356788999999999998 899999999987653
No 68
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=99.26 E-value=2e-11 Score=121.38 Aligned_cols=112 Identities=12% Similarity=0.058 Sum_probs=85.4
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
..+++||+.||+..+ .|+|+||||.+|.||+. ++|+.||+.||+|+++. ..+.++.+.|.|+|. .+.
T Consensus 148 ~~~~~vLL~rr~~~~--~g~w~lPgG~vE~GEt~---eeAa~REv~EEtGl~v~------~~~~~~~~~~~~~~~--~~~ 214 (269)
T 1vk6_A 148 RRDDSILLAQHTRHR--NGVHTVLAGFVEVGETL---EQAVAREVMEESGIKVK------NLRYVTSQPWPFPQS--LMT 214 (269)
T ss_dssp EETTEEEEEEETTTC--SSCCBCEEEECCTTCCH---HHHHHHHHHHHHCCEEE------EEEEEEEEEEETTEE--EEE
T ss_pred EeCCEEEEEEecCCC--CCcEECCcCcCCCCCCH---HHHHHHHHHHHhCceee------eEEEEEEEecCCCCE--EEE
Confidence 347899999998654 79999999999999876 89999999999999886 567888888999986 356
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHH-HHHHHHH
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGV-RKVYTMV 471 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~-~kil~~L 471 (498)
+|.+.+ ..+.. .....|..+++|++.+++..++++.+. +.+++..
T Consensus 215 ~f~a~~-~~~~~----~~~~~E~~~~~W~~~~el~~l~~~~si~~~li~~~ 260 (269)
T 1vk6_A 215 AFMAEY-DSGDI----VIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDT 260 (269)
T ss_dssp EEEEEE-EECCC----CCCTTTEEEEEEEETTSCCSCCCTTSHHHHHHHHH
T ss_pred EEEEEE-CCCCc----CCCCcceEEEEEEEHHHhhhcccCcHHHHHHHHHH
Confidence 677764 23321 122356778999999999998887643 3444443
No 69
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.23 E-value=5e-12 Score=113.04 Aligned_cols=104 Identities=15% Similarity=0.032 Sum_probs=67.8
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+|+||+.++...+..+|+|+||||++++||++ ++|+.||+.||+|+++. ..+.++.+.+...+....++
T Consensus 14 ~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~ 84 (145)
T 2w4e_A 14 TAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDL---GAAAARELLEEVGGAAS------EWVPLPGFYPQPSISGVVFY 84 (145)
T ss_dssp ETTSEEEEEEEEETTTTEEEEECEEEECCTTCCH---HHHHHHHHHHHHCEECS------EEEECCCBBSCTTTCCCEEE
T ss_pred cCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCH---HHHHHHHHHHhhCCccC------eEEEEecCcCCCCccCceEE
Confidence 4578887654322334578999999999999877 89999999999999876 34556654444333344467
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
+|.+.. ..++.. .....|+.+++|++.+++.++
T Consensus 85 ~f~~~~-~~~~~~---~~~~~E~~~~~w~~~~el~~~ 117 (145)
T 2w4e_A 85 PLLALG-VTLGAA---QLEDTETIERVVLPLAEVYRM 117 (145)
T ss_dssp EEEEEE-EEEC-----------CEEEEEEEHHHHHHH
T ss_pred EEEEEe-cccCCC---CCCCCCeEEEEEEeHHHHHHH
Confidence 777652 222111 123457788999999998764
No 70
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.20 E-value=9.3e-11 Score=110.29 Aligned_cols=117 Identities=13% Similarity=0.136 Sum_probs=75.3
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCC-CCCCcccccccccccE-EEEcC-------
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLD-PRNNCSIILREDVGEF-VHIFS------- 414 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~-v~~~~~~~~~~~l~~v-~H~fs------- 414 (498)
+++||+.+|+. .|.|+||||+++.||++ .+|+.||+.||+|++ +.. .......+ .|.++
T Consensus 57 ~~~vLL~~r~~----~g~w~lPgG~ve~gEs~---~eaa~REl~EEtGl~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 124 (197)
T 3fcm_A 57 RNKFLMIHHNI----YNSWAWTGGHSDNEKDQ---LKVAIKELKEETGVKNPTP-----LLDKAFALDVLTVNGHIKRGK 124 (197)
T ss_dssp SCEEEEEEETT----TTEEECEEEECTTCCBH---HHHHHHHHHHHHCCSSCEE-----SCSSCSEEEEEEECCEEETTE
T ss_pred CCEEEEEEecC----CCCEECCccccCCCCCH---HHHHHHHHHHHHCCCcccc-----cCCCceEEEEeeecCccccCc
Confidence 35999999873 56999999999999877 899999999999997 330 01111111 12221
Q ss_pred ----CeEEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhhc
Q 010868 415 ----HIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQK 477 (498)
Q Consensus 415 ----H~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~~ 477 (498)
|.++. .+|.+. ...+.. ......|+.+++|++++++.++...+.++++++.+.+....
T Consensus 125 ~~~~~~~~~-~~~~~~--~~~~~~--~~~~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~l~~ 186 (197)
T 3fcm_A 125 YVSSHLHLN-LTYLIE--CSEDET--LMLKEDENSGVMWIPFNEISKYCSEPHMIPIYEKLINKLKT 186 (197)
T ss_dssp EECCEEEEE-EEEEEE--CCTTSC--CCCCC----CEEEEEGGGHHHHCCCGGGHHHHHHHHHHHHC
T ss_pred ccCCceeEE-EEEEEE--eCCCcc--cCCCcccccceEEccHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 22222 234443 222111 12334678889999999999998899998888887776553
No 71
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.19 E-value=2.4e-11 Score=118.56 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=87.3
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCC--CCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEc--CCeEE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDG--ETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF--SHIRL 418 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~--~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~f--sH~~l 418 (498)
.+++||+.||.. ..++|.|+||||.++. +|+. ++|+.||+.||+|+++. ..+.++.+.+.+ +..++
T Consensus 35 ~~~~vLLv~R~~-~~~~g~W~lPGG~ve~~~gEs~---~~AA~REl~EEtGl~~~------~~~~l~~~~~~~r~~~~~~ 104 (240)
T 3gz5_A 35 QQLKVLLVQRSN-HPFLGLWGLPGGFIDETCDESL---EQTVLRKLAEKTAVVPP------YIEQLCTVGNNSRDARGWS 104 (240)
T ss_dssp TEEEEEEEECCS-SSSTTCEECSEEECCTTTCSBH---HHHHHHHHHHHHSSCCS------EEEEEEEEEESSSSTTSCE
T ss_pred CCcEEEEEECcC-CCCCCCEECCccccCCCCCcCH---HHHHHHHHHHHHCCCCC------ceeeEEEeCCCccCCCceE
Confidence 356999999984 5579999999999998 8766 89999999999999886 556666666543 22334
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhhc
Q 010868 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQK 477 (498)
Q Consensus 419 ~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~~ 477 (498)
...+|.+.+ ..+.. .....++.+++|++.+++...+++..++.|++.......+
T Consensus 105 ~~~~y~a~~--~~~~~---~~~~~e~~~~~W~~~~el~~~~l~~dh~~il~~a~~rlr~ 158 (240)
T 3gz5_A 105 VTVCYTALM--SYQAC---QIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQARERLTQ 158 (240)
T ss_dssp EEEEEEEEC--CHHHH---HHHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHHHHHHHHH
T ss_pred EEEEEEEEe--ccccc---CCCCCcccceEEecHHHcccCCcchhHHHHHHHHHHHHHH
Confidence 445555542 22111 1234577889999999999888999999988875544443
No 72
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.18 E-value=3.8e-11 Score=113.20 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=73.6
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccc-cEEEEcCCeE-EE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVG-EFVHIFSHIR-LK 419 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~-~v~H~fsH~~-l~ 419 (498)
..+++||+.||... ++|.|+||||+++.+|++ ++|+.||+.||+|+++. ..+.++ ...|.++... ..
T Consensus 36 ~~~~~vLL~~r~~~--~~g~w~lPGG~ve~gEs~---~~aA~REl~EEtGl~~~------~~~l~~~~~~~~~~~~~~~~ 104 (199)
T 3h95_A 36 ESTRKILVVQDRNK--LKNMWKFPGGLSEPEEDI---GDTAVREVFEETGIKSE------FRSVLSIRQQHTNPGAFGKS 104 (199)
T ss_dssp TTTTEEEEEEESSS--STTSBBCCEEECCTTCCH---HHHHHHHHHHHHCCCEE------EEEEEEEEECC---------
T ss_pred CCCCEEEEEEEcCC--CCCCEECCccccCCCCCH---HHHHHHHHHHHhCCccc------cceEEEEEeeecCCCCceeE
Confidence 45689999999653 589999999999999876 89999999999999875 333333 1124444332 22
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCC-hHHHHHHHHHHh
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT-SGVRKVYTMVQK 473 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp-~a~~kil~~L~~ 473 (498)
..+|.+.+. .+.. . ..+...|..+++|++.+++.++... +..+.++..+..
T Consensus 105 ~~~~~~~~~-~~~~-~-~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~~ 156 (199)
T 3h95_A 105 DMYIICRLK-PYSF-T-INFCQEECLRCEWMDLNDLAKTENTTPITSRVARLLLY 156 (199)
T ss_dssp CEEEEEEEE-ESCC-C-CCCCTTTEEEEEEEEHHHHHHCSSBCHHHHHHHHHHHH
T ss_pred EEEEEEEEc-CCCc-c-cCCCccceeeeEEEeHHHHhhhhhcChHHHHHHHHHHh
Confidence 233444432 2211 1 1223457788999999999886544 444445555544
No 73
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.18 E-value=2.9e-11 Score=107.36 Aligned_cols=104 Identities=12% Similarity=0.109 Sum_probs=67.3
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEE-EEcCCeEEEEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV-HIFSHIRLKVHV 422 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~-H~fsH~~l~l~~ 422 (498)
+++||+.||.. .|+|+||||.++.+|+. ++|+.||+.||+|+++. ....+..+. +.+++... ++
T Consensus 16 ~~~vLl~~r~~----~g~w~~PgG~ve~gEs~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~--~~ 80 (146)
T 2jvb_A 16 LSKILLVQGTE----SDSWSFPRGKISKDEND---IDCCIREVKEEIGFDLT------DYIDDNQFIERNIQGKNY--KI 80 (146)
T ss_dssp SSEEEEECCSS----SSCCBCCEECCCSSSCH---HHHHHHHHHHHTSCCCS------SSSCSSCEEEEEETTEEE--EE
T ss_pred CCEEEEEEEcC----CCcEECCcccCCCCCCH---HHHHHHHHHHHHCCCch------HhcccccccccccCCceE--EE
Confidence 48999999874 48999999999999876 79999999999999876 112223322 22333333 33
Q ss_pred EEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHH
Q 010868 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGV 464 (498)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~ 464 (498)
|.+.. ........ .....|+.+++|++++++.++..+..+
T Consensus 81 ~~~~~-~~~~~~~~-~~~~~E~~~~~W~~~~el~~~~~~~~~ 120 (146)
T 2jvb_A 81 FLISG-VSEVFNFK-PQVRNEIDKIEWFDFKKISKTMYKSNI 120 (146)
T ss_dssp EEECC-CCSSSCCC-CCCSSSCCCEEEEEHHHHHTGGGCSSC
T ss_pred EEEEe-ccccccCC-cCCcchhheeEEeEHHHHHhhhcccch
Confidence 33321 11111110 112457788999999999887655543
No 74
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.17 E-value=1.4e-11 Score=117.89 Aligned_cols=121 Identities=13% Similarity=0.103 Sum_probs=82.0
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCC-ChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGET-DITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKV 420 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e-~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l 420 (498)
+.++++|+.|| ++|+|+||||+++.+| ++ ++|+.||+.||+|+++.... ......+..+.|.|+ .++.+
T Consensus 53 ~~~~~vLl~~r-----~~g~w~~PGG~ve~gE~t~---~~aa~REl~EEtGl~~~~~~-l~~~~~~~~~~~~~~-~~~~~ 122 (212)
T 1u20_A 53 PIRRVLLMMMR-----FDGRLGFPGGFVDTRDISL---EEGLKRELEEELGPALATVE-VTEDDYRSSQVREHP-QKCVT 122 (212)
T ss_dssp ECCEEEEEEEE-----TTSCEECSEEEECTTTSCH---HHHHHHHHHHHHCGGGGGCC-CCGGGEEEEEEECTT-SCEEE
T ss_pred ecCCEEEEEEe-----CCCeEECCCcccCCCCCCH---HHHHHHHHHHHHCCCccccc-eeeeeEEEeccccCC-CcEEE
Confidence 45789999999 5899999999999998 76 89999999999999875110 001235777888888 56677
Q ss_pred EEEEEEEEEeCCcccc-------cccccCCCCceeeecCCCcCCC--CCC---------hHHHHHHHHHHhh
Q 010868 421 HVELLVLCIKGGIDKW-------VEKQDKGTLSWKCVDGGTLASM--GLT---------SGVRKVYTMVQKF 474 (498)
Q Consensus 421 ~~~~~~~~~~g~~~~~-------~~~~~~e~~~~~Wv~~~eL~~~--~fp---------~a~~kil~~L~~~ 474 (498)
++|.+.+ ..+ .... ......+..+..|++.+++.+. .+| .+...+++.|+..
T Consensus 123 ~~f~~~~-~~~-~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~~~~~p~f~~~~~i~~a~~~l~~~l~~~ 192 (212)
T 1u20_A 123 HFYIKEL-KLE-EIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPAFLCNNFIGNSKSQLLYALRSL 192 (212)
T ss_dssp EEEEEEC-CHH-HHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTSSTBHHHHTTSCBCTTHHHHHHHHHHHT
T ss_pred EEEEEEe-cCC-CcccccccccccccCCcceEEEEEEEHHHhhhhhcCCchhhhhhhhHHHHHHHHHHHHhC
Confidence 8888863 222 1100 0011234456899999999764 222 5556666666553
No 75
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.17 E-value=4.5e-11 Score=115.55 Aligned_cols=112 Identities=15% Similarity=0.122 Sum_probs=77.3
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC--CeEEEE
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--HIRLKV 420 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs--H~~l~l 420 (498)
.+++||+.+|.. ...+|.|+||||.++.+|+. ++|+.||+.||+|+++. ..+.++.+.+.+. ..++..
T Consensus 26 ~~~~vLLv~r~~-~~~~g~w~lPGG~ve~gEs~---~~Aa~REl~EEtGl~~~------~~~~l~~~~~~~r~~~~~~v~ 95 (226)
T 2fb1_A 26 GEISLLLLKRNF-EPAMGEWSLMGGFVQKDESV---DDAAKRVLAELTGLENV------YMEQVGAFGAIDRDPGERVVS 95 (226)
T ss_dssp TEEEEEEEECSS-SSSTTCEECEEEECCTTSCH---HHHHHHHHHHHHCCCSC------EEEEEEEECCTTSSSSSCEEE
T ss_pred CCCEEEEEECcC-CCCCCCEECCeeccCCCCCH---HHHHHHHHHHHHCCCCC------ceEEEEEeCCCCcCCCceEEE
Confidence 468999999976 46789999999999999876 89999999999999876 4455655543332 122323
Q ss_pred EEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHH
Q 010868 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMV 471 (498)
Q Consensus 421 ~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (498)
.+|.+.+ .++.. .....++.+++|++.+++.++.|. +..|++..
T Consensus 96 ~~y~a~~--~~~~~---~~~~~e~~~~~W~~~~el~~l~~d--h~~il~~a 139 (226)
T 2fb1_A 96 IAYYALI--NINEY---DRELVQKHNAYWVNINELPALIFD--HPEMVDKA 139 (226)
T ss_dssp EEEEEEC--CTTSS---CHHHHHHTTEEEEETTSCCCBSTT--HHHHHHHH
T ss_pred EEEEEEe--cCccc---ccCCccccceEEEEHHHhhhccCC--HHHHHHHH
Confidence 3555542 32211 112245678999999999988776 44555543
No 76
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.16 E-value=2.6e-11 Score=114.67 Aligned_cols=101 Identities=14% Similarity=0.032 Sum_probs=75.1
Q ss_pred eEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEEEE
Q 010868 346 VFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELL 425 (498)
Q Consensus 346 kvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~~~ 425 (498)
+||+.+|...+..+|+||||||++++||++ ++|+.||+.||+|+++. ..+.++.+.+........+++|.+
T Consensus 61 ~vLLvrq~r~~~~~~~welPgG~ve~gEs~---~~aA~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~~f~a 131 (198)
T 1vhz_A 61 HLILIREYAVGTESYELGFSKGLIDPGESV---YEAANRELKEEVGFGAN------DLTFLKKLSMAPSYFSSKMNIVVA 131 (198)
T ss_dssp EEEEEEEEETTTTEEEEECEEEECCTTCCH---HHHHHHHHHHHHSEEEE------EEEEEEEEECCTTTCCCEEEEEEE
T ss_pred EEEEEEcccCCCCCcEEEeCcccCCCCcCH---HHHHHHHHHHHHCCCcC------ceEEEEEEeCCCCccCcEEEEEEE
Confidence 999988766677899999999999999877 89999999999999875 456677766665554555677777
Q ss_pred EEEEeCCcccccccccCCCCceeeecCCCcCCCC
Q 010868 426 VLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG 459 (498)
Q Consensus 426 ~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~ 459 (498)
.. ..+... .....|..++.|++.+++.++-
T Consensus 132 ~~-~~~~~~---~~~~~E~~~~~w~~~~el~~~~ 161 (198)
T 1vhz_A 132 QD-LYPESL---EGDEPEPLPQVRWPLAHMMDLL 161 (198)
T ss_dssp EE-EEECCC---CCCCSSCCCEEEEEGGGGGGGG
T ss_pred Ee-CCcccC---CCCCCceEEEEEEEHHHHHHHH
Confidence 63 222111 1223567789999999987753
No 77
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.15 E-value=8.9e-12 Score=118.49 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=74.1
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccC-CCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEE-E
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILD-GETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRL-K 419 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve-~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l-~ 419 (498)
+.+|+||+.+|...+..+|+|+||||.++ .+|++ ++|+.||+.||+|+++. ....++.+ |.++++.. .
T Consensus 52 ~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~---~~aa~REl~EEtGl~~~------~~~~l~~~-~~~~~~~~~~ 121 (207)
T 1mk1_A 52 DDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPP---HLTAARELREEVGLQAS------TWQVLVDL-DTAPGFSDES 121 (207)
T ss_dssp CTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCH---HHHHHHHHHHHHCEEEE------EEEEEEEE-CSCTTTBCCC
T ss_pred cCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCH---HHHHHHHHHHHHCCccc------ccEEEEEE-EcCCCccccE
Confidence 46789999998877788999999999999 89876 79999999999999875 44556555 66666643 4
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCC
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGL 460 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~f 460 (498)
+++|.+.. ..+.... ......|+.++.|++.+++.++-+
T Consensus 122 ~~~f~~~~-~~~~~~~-~~~~~~E~~~~~Wv~~~el~~~~~ 160 (207)
T 1mk1_A 122 VRVYLATG-LREVGRP-EAHHEEADMTMGWYPIAEAARRVL 160 (207)
T ss_dssp EEEEEEEE-EEECCC-----------CEEEEEHHHHHHHHH
T ss_pred EEEEEEEc-cccCCCC-CCCCCCceEEEEEEEHHHHHHHHH
Confidence 67777763 2321110 002235677899999999877543
No 78
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.12 E-value=2.3e-10 Score=104.60 Aligned_cols=115 Identities=18% Similarity=0.144 Sum_probs=73.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccE----EEEcCC--
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF----VHIFSH-- 415 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v----~H~fsH-- 415 (498)
+.+|+||+.+|.. .|.|+||||.++.+|++ ++|+.||+.||+|+++. ..+.++.+ .+.++.
T Consensus 17 ~~~~~vLl~~r~~----~~~w~~p~G~~e~gE~~---~~aa~RE~~EE~G~~~~------~~~~~~~~~~~~~~~~~~~~ 83 (164)
T 2kdv_A 17 NRQGQVMWARRFG----QHSWQFPQGGINPGESA---EQAMYRELFEEVGLSRK------DVRILASTRNWLRYKLPKRL 83 (164)
T ss_dssp CTTSEEEEEEETT----CCCEECCEEECCTTCCH---HHHHHHHHHHHHCCCGG------GEEEEEECSSCEEEECCTTT
T ss_pred ccCCEEEEEEEcC----CCeEECCeeecCCCCCH---HHHHHHHHHHHHCCCcc------ceEEEEEecceeEEecCcce
Confidence 5578999999974 68999999999999876 89999999999999876 33444443 233432
Q ss_pred ---------eEEEEEEEEEEEEEeCCcccc-ccc-ccCCCCceeeecCCCcCCCCCChHHHHHHHHHH
Q 010868 416 ---------IRLKVHVELLVLCIKGGIDKW-VEK-QDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQ 472 (498)
Q Consensus 416 ---------~~l~l~~~~~~~~~~g~~~~~-~~~-~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (498)
.....++|.+.+ .++.... ..+ ...|..+++|++.+++... +.+.++.++....
T Consensus 84 ~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~-l~~~~~~~~~~~l 148 (164)
T 2kdv_A 84 VRWDTKPVCIGQKQKWFLLQL--VSGDAEINMQTSSTPEFDGWRWVSYWYPVRQ-VVSFKRDVYRRVM 148 (164)
T ss_dssp CCTTSSSCCCEEEEEEEEEEE--SSCGGGCCSCSSSSCSEEEEEEEETTTGGGG-SCHHHHHHHHHHH
T ss_pred eeeccCcccccceeEEEEEEe--cCCccccccCCCCCchhceEEEecHHHhhhh-hhhhhHHHHHHHH
Confidence 122356677653 3221110 011 1236678999999886542 2233445544433
No 79
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.05 E-value=9.8e-11 Score=120.71 Aligned_cols=119 Identities=12% Similarity=-0.044 Sum_probs=84.9
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC-------
Q 010868 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH------- 415 (498)
Q Consensus 343 ~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH------- 415 (498)
.+.+||+.+|+.. |.|+||||+++.||++ ++|+.||+.||+|+++. ....++.+.|.|++
T Consensus 36 ~~~~vLLv~r~~~----g~W~lPgG~ve~gEs~---~~AA~REl~EEtGl~~~------~~~~l~~~~~~~~~~g~~~~~ 102 (364)
T 3fjy_A 36 DSIEVCIVHRPKY----DDWSWPKGKLEQNETH---RHAAVREIGEETGSPVK------LGPYLCEVEYPLSEEGKKTRH 102 (364)
T ss_dssp TTEEEEEEEETTT----TEEECCEEECCTTCCH---HHHHHHHHHHHHSCCEE------EEEEEEEEC------------
T ss_pred CceEEEEEEcCCC----CCEECCcCCCCCCCCH---HHHHHHHHHHHhCCeee------eccccceEEEeccCCCccccc
Confidence 4569999999653 8999999999999876 89999999999999986 55677777777763
Q ss_pred ------eEEEEEEEEEEEEEeCCc--------ccccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhh
Q 010868 416 ------IRLKVHVELLVLCIKGGI--------DKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFK 475 (498)
Q Consensus 416 ------~~l~l~~~~~~~~~~g~~--------~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~ 475 (498)
....+++|.+.. ..+.. .........|..+++|++++++.++...+.++.+++.+....
T Consensus 103 ~~~~~~~~~~~~~f~~~~-~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~r~il~~~~~~l 175 (364)
T 3fjy_A 103 SHDCTADTKHTLYWMAQP-ISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVFVDRV 175 (364)
T ss_dssp ---------CEEEEEEEE-CCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred ccccccCceEEEEEEEEe-cCCccccccccccCccccCCccceeeeecCcHHHHHHHhcchhhHHHHHHHHHHh
Confidence 134566777653 22210 000012335788999999999999999999999999887764
No 80
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.01 E-value=7.7e-10 Score=107.71 Aligned_cols=126 Identities=12% Similarity=0.028 Sum_probs=84.0
Q ss_pred cCCCeEEEEecCCCC-CCCcccccCc-cccCCC------CChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEc
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWEFPS-IILDGE------TDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF 413 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWEFPg-gkve~~------e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~f 413 (498)
+.+|++||+||...+ .++|+|+||+ |.++.| |++...++|+.||+.||+|+.+... ......+++.+.|.+
T Consensus 68 ~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v-~~~~l~~l~~~~y~~ 146 (235)
T 2dho_A 68 NTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEV-PPEEINYLTRIHYKA 146 (235)
T ss_dssp CTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGS-CGGGSEEEEEEEEEE
T ss_pred cCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCcccc-ChhhcEEEEEEEEec
Confidence 567899999998754 6899999994 989887 3321147999999999999986310 000124566666665
Q ss_pred CCe-----EEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC---------CCChHHHHHHHHHHhh
Q 010868 414 SHI-----RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM---------GLTSGVRKVYTMVQKF 474 (498)
Q Consensus 414 sH~-----~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~---------~fp~a~~kil~~L~~~ 474 (498)
+.. +-..++|.+. ..+.. .+...|..+++|++++++.++ .|.+..+.+++.+...
T Consensus 147 ~~~~~~~~~e~~~vf~~~--~~~~~----~~~~~Ev~~~~wv~~~el~~~l~~~~~~~~~ftp~~~~i~~~~L~~ 215 (235)
T 2dho_A 147 QSDGIWGEHEIDYILLVR--MNVTL----NPDPNEIKSYCYVSKEELKELLKKAASGEIKITPWFKIIAATFLFK 215 (235)
T ss_dssp ECSSSBEEEEEEEEEEEE--CCCCC----CCCTTTEEEEEEECHHHHHHHHHHHHTTSSCBCHHHHHHHHHTHHH
T ss_pred cCCCccceeEEEEEEEEE--ECCCC----cCChHHEEEEEEEcHHHHHHHHhhccCCCcEECHhHHHHHHHHHHH
Confidence 321 1124566654 23311 234467788999999998653 7888888887775444
No 81
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.01 E-value=1.1e-09 Score=108.80 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=65.0
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccE-EEEcCCeEEEEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF-VHIFSHIRLKVHV 422 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v-~H~fsH~~l~l~~ 422 (498)
+|+||+.+|... +|.|+||||++++||++ ++|+.||+.||+|+++.. ...+... ...+++.. +++
T Consensus 113 ~~~vLLv~r~~~---~g~W~lPgG~ve~gEs~---~eAA~REl~EEtGl~~~~------l~~~~~~~~~~~~~~~--~~~ 178 (271)
T 2a6t_A 113 MQQCVLVKGWKA---SSGWGFPKGKIDKDESD---VDCAIREVYEETGFDCSS------RINPNEFIDMTIRGQN--VRL 178 (271)
T ss_dssp SSEEEEEEESST---TCCCBCSEEECCTTCCH---HHHHHHHHHHHHCCCCTT------TCCTTCEEEEEETTEE--EEE
T ss_pred CCEEEEEEEeCC---CCeEECCcccCCCCcCH---HHHHHHHHHHHhCCCcee------eeeeeeeccCCcCCce--EEE
Confidence 589999999653 58999999999999877 899999999999999862 1122211 12344543 455
Q ss_pred EEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCC
Q 010868 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT 461 (498)
Q Consensus 423 ~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp 461 (498)
|.+.. ........ .....|..+++|++.+++.++.+.
T Consensus 179 f~~~~-~~~~~~~~-~~~~~E~~~~~W~~~~el~~~~~~ 215 (271)
T 2a6t_A 179 YIIPG-ISLDTRFE-SRTRKEISKIEWHNLMDLPTFKKN 215 (271)
T ss_dssp EEECC-CCTTCCCC-------EEEEEEEEGGGSTTCC--
T ss_pred EEEEE-ecCcccCC-CCCccceeEEEEEEHHHHHHHHhc
Confidence 55542 11111000 013356788999999999887554
No 82
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=98.99 E-value=3.6e-10 Score=106.61 Aligned_cols=116 Identities=12% Similarity=0.069 Sum_probs=72.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~ 421 (498)
+.+++||+.||... +|.|+||||+++.||++ ++|+.||+.||+|+++. ..+.++.+.+ +.+.. .++
T Consensus 51 ~~~~~vLLv~r~~~---~g~W~lPgG~ve~gEt~---~eaa~REl~EEtGl~~~------~~~~l~~~~~-~~~~~-~~~ 116 (194)
T 2fvv_A 51 ESEEEVLLVSSSRH---PDRWIVPGGGMEPEEEP---SVAAVREVCEEAGVKGT------LGRLVGIFEN-QERKH-RTY 116 (194)
T ss_dssp TTCCEEEEEECSSC---TTSEECSEEECCTTCCH---HHHHHHHHHHHHCEEEE------EEEEEEEEEE-TTTTE-EEE
T ss_pred CCCCEEEEEEEeCC---CCcEECCCCcCCCCcCH---HHHHHHHHHHHhCCccc------cceEEEEEEc-CCCce-EEE
Confidence 34689999998753 48999999999999876 89999999999999875 4556666554 33332 356
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCC--CChHHHHHHHHHHhh
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG--LTSGVRKVYTMVQKF 474 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~--fp~a~~kil~~L~~~ 474 (498)
+|.+.+ .+.... ......++.+++|++++++.++- -...+.+.+..++..
T Consensus 117 ~f~~~~--~~~~~~-~~~~~e~~~~~~W~~~~el~~~l~~~~~~~~~~l~~l~~~ 168 (194)
T 2fvv_A 117 VYVLIV--TEVLED-WEDSVNIGRKREWFKIEDAIKVLQYHKPVQASYFETLRQG 168 (194)
T ss_dssp EEEEEE--EEECSS-CHHHHHHCCCEEEEEHHHHHHHHTTTCHHHHHHTCC----
T ss_pred EEEEEE--ccccCC-CCCcccccceEEEEEHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 666653 221111 01111234678999999987531 223344444444433
No 83
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=98.98 E-value=1.2e-09 Score=106.98 Aligned_cols=126 Identities=12% Similarity=-0.012 Sum_probs=83.4
Q ss_pred cCCCeEEEEecCCCC-CCCcccccCc-cccCCC------CChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEc
Q 010868 342 QPDGVFILVKRRDEG-LLAGLWEFPS-IILDGE------TDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF 413 (498)
Q Consensus 342 ~~~gkvLI~KRp~~g-llaGLWEFPg-gkve~~------e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~f 413 (498)
+.+|++||+||...+ .++|+|+||+ |.++.| |++...++|+.||+.||+|+.+.... .....+++.+.|.+
T Consensus 79 ~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~-~~~l~~l~~~~y~~ 157 (246)
T 2pny_A 79 NTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQIS-PEDIVFMTIYHHKA 157 (246)
T ss_dssp CTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCC-GGGSEEEEEEEEEE
T ss_pred eCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccC-ccccEEEEEEEEEe
Confidence 567899999998754 6899999996 888877 43212379999999999999864100 00124566666655
Q ss_pred CC----e-EEEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC---------CCChHHHHHHHHHHhh
Q 010868 414 SH----I-RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM---------GLTSGVRKVYTMVQKF 474 (498)
Q Consensus 414 sH----~-~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~---------~fp~a~~kil~~L~~~ 474 (498)
+. . +-..++|.+. ..+.. .+...|..+++|++++++.++ .|.+..+.+++.+...
T Consensus 158 ~~~~~~~~~e~~~vf~~~--~~~~~----~~~~~Ev~~~~wv~~eel~~~l~~~~~~~~~ftp~~~~i~~~~l~~ 226 (246)
T 2pny_A 158 KSDRIWGEHEICYLLLVR--KNVTL----NPDPSETKSILYLSQEELWELLEREARGEVKVTPWLRTIAERFLYR 226 (246)
T ss_dssp ESSSSBEEEEEEEEEEEE--CCCCC----CCCTTTEEEEEEECHHHHHHHHHHHHHTSSCBCHHHHHHHHHTHHH
T ss_pred cCCCceeeeEEEEEEEEE--ECCCC----CCChHHeeEEEEEeHHHHHHHHHhccCCCceECHhHHHHHHHHHHH
Confidence 32 1 1224566654 23311 234467788999999998653 7888888777765443
No 84
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=98.95 E-value=3.1e-10 Score=106.22 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=51.2
Q ss_pred eEEEEecCCCCCCCcccccCccccCCCC-ChhhHHHHHHHHHHHhcCC-CCCCCcccccccccccEEEEcCCeEEEEEEE
Q 010868 346 VFILVKRRDEGLLAGLWEFPSIILDGET-DITTRREAAECFLKKSFNL-DPRNNCSIILREDVGEFVHIFSHIRLKVHVE 423 (498)
Q Consensus 346 kvLI~KRp~~gllaGLWEFPggkve~~e-~~e~~~~aL~rel~EElgi-~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~ 423 (498)
.||++.|- +|+||||||+||.+| +. +++|.||+.||+|+ .+. ..+++.++.|.|+ .++.+++|
T Consensus 45 ~iLmQ~R~-----~G~weFPGGkVe~gE~t~---e~aL~REl~EElg~~~V~------~~~y~~s~~~~yp-~~V~LHfY 109 (214)
T 3kvh_A 45 SVLMQMRF-----DGLLGFPGGFVDRRFWSL---EDGLNRVLGLGLGCLRLT------EADYLSSHLTEGP-HRVVAHLY 109 (214)
T ss_dssp EEEEEEET-----TSCEECSEEEECTTTCCH---HHHHHHSCCSCC---CCC------GGGEEEEEEC-----CEEEEEE
T ss_pred eEEEeeee-----CCEEeCCCccCCCCCCCH---HHHHHHHHHHhhCCeeee------eeeeEEEEeccCC-CEEEEEEE
Confidence 56777774 489999999999998 55 89999999999997 465 5678888889998 57889999
Q ss_pred EEEE
Q 010868 424 LLVL 427 (498)
Q Consensus 424 ~~~~ 427 (498)
.|++
T Consensus 110 ~crl 113 (214)
T 3kvh_A 110 ARQL 113 (214)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9974
No 85
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=98.95 E-value=4.1e-10 Score=105.70 Aligned_cols=104 Identities=8% Similarity=-0.075 Sum_probs=69.1
Q ss_pred CCCeEEEEecCCCCC------CCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCe
Q 010868 343 PDGVFILVKRRDEGL------LAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI 416 (498)
Q Consensus 343 ~~gkvLI~KRp~~gl------laGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~ 416 (498)
.++++|+.++...+. .+|.|+||||+++ +|++ ++|+.||+.||+|+++. ....++.+.+..++.
T Consensus 56 ~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~---~~aa~REl~EEtG~~~~------~~~~l~~~~~~~~~~ 125 (191)
T 3o6z_A 56 KKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEP---EVCIRKEAIEETGYEVG------EVRKLFELYMSPGGV 125 (191)
T ss_dssp TTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCH---HHHHHHHHHHHC-CCCS------CEEEEEEEESCTTTB
T ss_pred CCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCH---HHHHHHHHHHHhCCccC------cEEEEEEEEeCCCcc
Confidence 368999877643222 6789999999999 8876 89999999999999886 455666655554444
Q ss_pred EEEEEEEEEEEEEeCCcc-cccccccCCCCceeeecCCCcCCC
Q 010868 417 RLKVHVELLVLCIKGGID-KWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 417 ~l~l~~~~~~~~~~g~~~-~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
...+++|.+.. ...... ..... ..|..++.|++.+++.++
T Consensus 126 ~~~~~~f~~~~-~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~ 166 (191)
T 3o6z_A 126 TELIHFFIAEY-SDNQRANAGGGV-EDEAIEVLELPFSQALEM 166 (191)
T ss_dssp CCEEEEEEEEC-CTTCC---------CCSSEEEEEEHHHHHHH
T ss_pred CcEEEEEEEEE-cccccccCCCCC-CCcEEEEEEEEHHHHHHH
Confidence 55567777753 111000 00011 457888999999988653
No 86
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=98.93 E-value=6.9e-10 Score=105.74 Aligned_cols=107 Identities=8% Similarity=-0.029 Sum_probs=66.6
Q ss_pred CCCeEEEEe--cCCCC---CCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeE
Q 010868 343 PDGVFILVK--RRDEG---LLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIR 417 (498)
Q Consensus 343 ~~gkvLI~K--Rp~~g---llaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~ 417 (498)
.+++||+.+ |+..+ ..+++||||||++++||++ ++|+.||+.||+|+.+. ..+.++.+.+.-....
T Consensus 68 ~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~---~~aA~REl~EEtGl~~~------~~~~l~~~~~~~g~~~ 138 (209)
T 1g0s_A 68 VRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESV---EDVARREAIEEAGLIVK------RTKPVLSFLASPGGTS 138 (209)
T ss_dssp TTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCH---HHHHHHHHHHHHCCCCC------CEEEEEEEESCTTTBC
T ss_pred CCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCH---HHHHHHHHHHHcCcccC------cEEEeEEEecCCCccC
Confidence 468888854 54322 1368999999999999877 89999999999999886 3455665532222223
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCC
Q 010868 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 418 l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
..+++|.+.+...............|..++.|++.+++.++
T Consensus 139 ~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~ 179 (209)
T 1g0s_A 139 ERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW 179 (209)
T ss_dssp CEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHH
T ss_pred cEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHH
Confidence 44677776531110000000122345678999999988653
No 87
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=98.88 E-value=9.5e-09 Score=101.99 Aligned_cols=119 Identities=8% Similarity=0.004 Sum_probs=77.0
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCC--eEEEEE
Q 010868 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH--IRLKVH 421 (498)
Q Consensus 344 ~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH--~~l~l~ 421 (498)
+++||+.+|... .++|.|+||||.++.+|+. ++|+.||+.||+|+++... ....+.++.+...+ .++..+
T Consensus 55 ~~~VLLv~R~~~-p~~g~W~lPGG~ve~gEs~---~~AA~REl~EEtGl~v~~~----~l~~l~~~~~~~r~~~~~~~~~ 126 (273)
T 2fml_A 55 QLKVLLIQRKGH-PFRNSWALPGGFVNRNEST---EDSVLRETKEETGVVISQE----NIEQLHSFSRPDRDPRGWVVTV 126 (273)
T ss_dssp EEEEEEEEECSS-SSTTCEECCEEECCTTSCH---HHHHHHHHHHHHCCCCCGG----GEEEEEEECCTTSSTTSSEEEE
T ss_pred CcEEEEEEccCC-CCCCcEECCccCCCCCcCH---HHHHHHHHHHHHCCCCCcC----cEEEEEEEcCCCCCCCceEEEE
Confidence 459999999765 5789999999999999876 8999999999999876410 12223322221111 123445
Q ss_pred EEEEEEEEeCCcccccccccCCCCceeeecCCC-----------------------cCCCCCChHHHHHHHHHHhhhh
Q 010868 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGT-----------------------LASMGLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 422 ~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~e-----------------------L~~~~fp~a~~kil~~L~~~~~ 476 (498)
+|.+.+ .++. .....+..+++|++.++ +...+++-.+..|+........
T Consensus 127 ~y~a~~--~~~~----~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~LafdH~~Il~~al~rlr 198 (273)
T 2fml_A 127 SYLAFI--GEEP----LIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEIIIKAFNRVV 198 (273)
T ss_dssp EEEEEC--CCCC----CCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTTHHHHHHHHHHHHH
T ss_pred EEEEEe--CCCC----CCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCcccccHHHHHHHHHHHHH
Confidence 666642 3321 12234667889999986 3345677778887766544433
No 88
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=98.85 E-value=4e-09 Score=100.42 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=65.1
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEE--EEcCCeEEEEEE
Q 010868 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV--HIFSHIRLKVHV 422 (498)
Q Consensus 345 gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~--H~fsH~~l~l~~ 422 (498)
++||+.++-..+..+|+||||||.++++|++ ++|+.||+.||+|+.+. ....++.+. +.|++..+ ++
T Consensus 77 ~~vlLv~q~R~~~~~~~welPgG~ve~gEs~---~~aA~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~--~~ 145 (212)
T 2dsc_A 77 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETP---EAAALRELEEETGYKGD------IAECSPAVCMDPGLSNCTI--HI 145 (212)
T ss_dssp CEEEEEEEEEGGGTEEEEECCEEECCTTCCH---HHHHHHHHHHHHCCCCE------EEEECCCEESCTTTBCCEE--EE
T ss_pred cEEEEEEeecCCCCCcEEECCccccCCCCCH---HHHHHHHHHHHhCCCcc------ceEEeccEEcCCCccCceE--EE
Confidence 5787765322234478999999999999877 89999999999999875 334444332 12444444 55
Q ss_pred EEEEEEEeCCcc--cccccccCCCCceeeecCCCcCCC
Q 010868 423 ELLVLCIKGGID--KWVEKQDKGTLSWKCVDGGTLASM 458 (498)
Q Consensus 423 ~~~~~~~~g~~~--~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (498)
|.+.+....... ........|..++.|++.+++.++
T Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 183 (212)
T 2dsc_A 146 VTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQR 183 (212)
T ss_dssp EEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHH
T ss_pred EEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHH
Confidence 555432211100 001223457888999999998653
No 89
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=98.77 E-value=6.1e-09 Score=100.24 Aligned_cols=90 Identities=6% Similarity=-0.149 Sum_probs=56.4
Q ss_pred CcccccCccccCC-CCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcCCeEEEEEEEEEEEEEeCCcc---
Q 010868 359 AGLWEFPSIILDG-ETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGID--- 434 (498)
Q Consensus 359 aGLWEFPggkve~-~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fsH~~l~l~~~~~~~~~~g~~~--- 434 (498)
+++||||||.+++ ||++ ++|+.||+.||+|+.+... ....++.+.+......-.+++|.+.+ .+...
T Consensus 94 ~~~welPgG~ve~~gEs~---~eaA~REl~EEtGl~~~~~----~l~~l~~~~~~~g~~~~~~~~f~a~~--~~~~~~~~ 164 (218)
T 3q91_A 94 GVTVELCAGLVDQPGLSL---EEVACKEAWEECGYHLAPS----DLRRVATYWSGVGLTGSRQTMFYTEV--TDAQRSGP 164 (218)
T ss_dssp CEEEECEEEECCSSSCCH---HHHHHHHHHHHHCBCCCGG----GCEEEEEEEEC---CCEEEEEEEEEE--CGGGBCC-
T ss_pred CeEEECCcceeCCCCCCH---HHHHHHHHHHHhCCccccC----ceEEEEEEecCCCccceEEEEEEEEE--CCcccccC
Confidence 7999999999998 8877 8999999999999987200 33455554443222233457777753 21100
Q ss_pred cccccccCCCCceeeecCCCcCC
Q 010868 435 KWVEKQDKGTLSWKCVDGGTLAS 457 (498)
Q Consensus 435 ~~~~~~~~e~~~~~Wv~~~eL~~ 457 (498)
........|..++.|++.+++.+
T Consensus 165 ~~~~~d~~E~~ev~wv~l~el~~ 187 (218)
T 3q91_A 165 GGGLVEEGELIEVVHLPLEGAQA 187 (218)
T ss_dssp --------CCEEEEEEEGGGHHH
T ss_pred CCCCCCCCcEEEEEEEEHHHHHH
Confidence 00122345778899999999855
No 90
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=98.63 E-value=1.3e-07 Score=94.83 Aligned_cols=121 Identities=14% Similarity=0.123 Sum_probs=74.2
Q ss_pred eEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCc--c---ccccccccc--EEEEcCC---
Q 010868 346 VFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNC--S---IILREDVGE--FVHIFSH--- 415 (498)
Q Consensus 346 kvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~--~---~~~~~~l~~--v~H~fsH--- 415 (498)
+||+.||... |.|+||||.++.+|+. ++|+.||+.||+|+.+.... . ....+.+.. -.++|+.
T Consensus 140 ~vLl~~r~~~----g~W~lPGG~Ve~GEs~---~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~ 212 (292)
T 1q33_A 140 QFVAIKRKDC----GEWAIPGGMVDPGEKI---SATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVD 212 (292)
T ss_dssp EEEEEECTTT----CSEECCCEECCTTCCH---HHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECC
T ss_pred EEEEEEecCC----CcEeCCCcccCCCCCH---HHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeeccccc
Confidence 7999999764 7999999999999876 89999999999998731000 0 001122222 1111211
Q ss_pred -------eEEEEEEEEEEEEEeCCcc-cccccccCCCCceeeecCCCcCCCCCChHHHHHHHHHHhhhh
Q 010868 416 -------IRLKVHVELLVLCIKGGID-KWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVYTMVQKFKQ 476 (498)
Q Consensus 416 -------~~l~l~~~~~~~~~~g~~~-~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~ 476 (498)
..+...+|.+.. ..+... ........+..+++|++.+++.. +...++.+++.+.+...
T Consensus 213 dpr~~d~~~~~~~~f~~~~-~~g~~~~~~~~~~~~E~~~~~W~~~del~~--L~~~h~~il~~~~~~~~ 278 (292)
T 1q33_A 213 DPRNTDNAWMETEAVNYHD-ETGEIMDNLMLEAGDDAGKVKWVDINDKLK--LYASHSQFIKLVAEKRD 278 (292)
T ss_dssp CTTCCSSEEEEEEEEEEEE-SSSTTTTTCCCCCCTTCSEEEEEECCTTCC--CSTTHHHHHHHHHHHHT
T ss_pred CCCCCcccEEEEEEEEEEe-CCCccccccccCCCCccceEEEEEcccCcc--cCHhHHHHHHHHHHHhc
Confidence 133334454431 122110 00012235678899999999985 67888999988766543
No 91
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=98.63 E-value=1.3e-07 Score=91.85 Aligned_cols=127 Identities=9% Similarity=-0.017 Sum_probs=86.0
Q ss_pred CeEEEEecCCC-CCCCcccccCccccCCCCCh-----------------hhHHHHHHHHHHHhcCCCCCCCcc---cc--
Q 010868 345 GVFILVKRRDE-GLLAGLWEFPSIILDGETDI-----------------TTRREAAECFLKKSFNLDPRNNCS---II-- 401 (498)
Q Consensus 345 gkvLI~KRp~~-gllaGLWEFPggkve~~e~~-----------------e~~~~aL~rel~EElgi~v~~~~~---~~-- 401 (498)
.+||+.||..+ .+++|.|.||||+++.++.. .....|..||+.||.|+.+..... ..
T Consensus 24 ~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~~~~~~~~~~~ 103 (232)
T 3qsj_A 24 IEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVRDGEGTKMDT 103 (232)
T ss_dssp EEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSEECTTCCBCCS
T ss_pred eEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceeccccccCcccCh
Confidence 38999999876 46899999999999976531 014688999999999998752110 00
Q ss_pred ----------------------------cccccccEEEE-cC---CeEEEEEEEEEEEEEeCCcccccccccCCCCceee
Q 010868 402 ----------------------------LREDVGEFVHI-FS---HIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKC 449 (498)
Q Consensus 402 ----------------------------~~~~l~~v~H~-fs---H~~l~l~~~~~~~~~~g~~~~~~~~~~~e~~~~~W 449 (498)
....+..+.|- .+ .++.+-++|.+.+ .. ... ......|+.+..|
T Consensus 104 ~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~l--pq-~~~-v~~d~~E~~~~~W 179 (232)
T 3qsj_A 104 PLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVG--QH-LGE-PRLHGAELDAALW 179 (232)
T ss_dssp CCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEEC--SS-CCC-CCCCSSSEEEEEE
T ss_pred hhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEEC--CC-CCC-CCCCCCceEEEEE
Confidence 01122222222 22 3557778887753 22 110 0224467888999
Q ss_pred ecCCCc------CCCCCChHHHHHHHHHHhhh
Q 010868 450 VDGGTL------ASMGLTSGVRKVYTMVQKFK 475 (498)
Q Consensus 450 v~~~eL------~~~~fp~a~~kil~~L~~~~ 475 (498)
+++++. ....++++...+|..|.++.
T Consensus 180 ~~p~eal~~~~~G~i~L~pPT~~~L~~L~~~~ 211 (232)
T 3qsj_A 180 TPARDMLTRIQSGELPAVRPTIAVLKALVACP 211 (232)
T ss_dssp EEHHHHHHHHHTTSSCCCHHHHHHHHHHHHCS
T ss_pred EcHHHHHHHHHcCCceechhHHHHHHHHHcCC
Confidence 999988 68999999999999988753
No 92
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=98.41 E-value=1.6e-07 Score=90.14 Aligned_cols=97 Identities=16% Similarity=0.053 Sum_probs=58.5
Q ss_pred eEEEEecCCCCCCCcccccCccccCCCC-ChhhHHHHHHHHHHHhcCCCCCCCcccccccccccE-EEEcCCeEEEEEEE
Q 010868 346 VFILVKRRDEGLLAGLWEFPSIILDGET-DITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF-VHIFSHIRLKVHVE 423 (498)
Q Consensus 346 kvLI~KRp~~gllaGLWEFPggkve~~e-~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v-~H~fsH~~l~l~~~ 423 (498)
++|+.+|. +|+|+||||+++.+| ++ ++|+.||+.||+|+++... ....+..+ .+.....+...++|
T Consensus 66 ~~ll~~r~-----~g~w~lPGG~ve~gE~t~---~eaa~REl~EEtGl~~~~~----~l~~l~~~~~~~~~~~~~~~~~f 133 (217)
T 2xsq_A 66 AILMQMRF-----DGRLGFPGGFVDTQDRSL---EDGLNRELREELGEAAAAF----RVERTDYRSSHVGSGPRVVAHFY 133 (217)
T ss_dssp EEEEEEET-----TSCEECSEEECCTTCSSH---HHHHHHHHHHHHCGGGGGC----CCCGGGEEEEEECSSSSEEEEEE
T ss_pred cEEEEEcc-----CCeEECCceecCCCCCCH---HHHHHHHHHHHHCCCCccc----eeEEEEEEeecCCCCCeEEEEEE
Confidence 56777764 689999999999998 76 8999999999999987510 01112211 11211123445666
Q ss_pred EEEEEEeCCcccc-------cccccCCCCceeeecCCCcC
Q 010868 424 LLVLCIKGGIDKW-------VEKQDKGTLSWKCVDGGTLA 456 (498)
Q Consensus 424 ~~~~~~~g~~~~~-------~~~~~~e~~~~~Wv~~~eL~ 456 (498)
.+.+ .++.... ......|..+..|++.+++.
T Consensus 134 ~~~l--~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~ 171 (217)
T 2xsq_A 134 AKRL--TLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLR 171 (217)
T ss_dssp EEEC--CHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred EEEe--ccccceecccccccccccCCceeeEEEEEHHHhh
Confidence 6653 2211100 01112344667899999997
No 93
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=98.24 E-value=2e-06 Score=86.56 Aligned_cols=128 Identities=8% Similarity=0.013 Sum_probs=80.8
Q ss_pred eEEEEecCCC-CCCCccc-ccCccccCCCCChhhHHHHHHHHHHHhcCCCCCCCcccccccccccEEEEcC--Ce--EEE
Q 010868 346 VFILVKRRDE-GLLAGLW-EFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--HI--RLK 419 (498)
Q Consensus 346 kvLI~KRp~~-gllaGLW-EFPggkve~~e~~e~~~~aL~rel~EElgi~v~~~~~~~~~~~l~~v~H~fs--H~--~l~ 419 (498)
++||+||... ..++|+| .+|+|.++.||++ .+|+.||+.||+|+.+... ....+.+.+.+.|. .. .-.
T Consensus 134 ~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~---~eaA~REl~EElGI~~~~~---~~l~~~g~i~y~~~~~~G~~~E~ 207 (300)
T 3dup_A 134 HLWIGRRSPDKSVAPGKLDNMVAGGQPADLSL---RQNLIKECAEEADLPEALA---RQAIPVGAITYCMESPAGIKPDT 207 (300)
T ss_dssp EEEEEEECTTCSSSTTCEEESEEEECCTTSCH---HHHHHHHHHHHHCCCHHHH---TTCEEEEEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCcccCCCCccccccccCCCCCCCH---HHHHHHHHHHHhCCChhhh---hhccccceEEEEEecCCCeEEEE
Confidence 9999999875 5799999 6999999999877 7999999999999986410 01134455554442 21 112
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCceeeecCCCcCC-----CCCC-hHHHHHHHHHHhhhhcccccCCCc
Q 010868 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS-----MGLT-SGVRKVYTMVQKFKQKRLTTNSIP 485 (498)
Q Consensus 420 l~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~-----~~fp-~a~~kil~~L~~~~~~~~~~~~~~ 485 (498)
+++|.+. +..+.. +.++..|..+++|++.+++.+ -.|. ....-+++.|.+. +.+|-..-|
T Consensus 208 ~~vy~~~--l~~~~~--p~~~~~EV~~~~~v~~~El~~~l~~pg~F~p~~~lV~ldfl~Rh--G~i~~~~~~ 273 (300)
T 3dup_A 208 LFLYDLA--LPEDFR--PHNTDGEMADFMLWPAAKVVEAVRTTEAFKFNVNLTVIDFAIRH--GLIDPDNEP 273 (300)
T ss_dssp EEEEEEE--CCTTCC--CCCTTSSEEEEEEEEHHHHHHHHHHCCCBCTTHHHHHHHHHHHT--TSSCTTTST
T ss_pred EEEEEEE--ecCCCc--CCCCchHhheEEEECHHHHHHHHhcCCCcCccHHHHHHHHHHHh--CCcCCccCC
Confidence 4555443 333221 134556788999999888744 2332 2333356666665 345544344
No 94
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.23 E-value=3.8e-07 Score=86.24 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=35.5
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhcCC
Q 010868 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNL 392 (498)
Q Consensus 345 gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EElgi 392 (498)
.+||+.|++.+ .|+||||++++||++ +++|.|||.||+|+
T Consensus 73 phVLLlq~~~~-----~f~LPGGkle~gE~~---~eaL~REL~EELg~ 112 (208)
T 3bho_A 73 PHVLLLQLGTT-----FFKLPGGELNPGEDE---VEGLKRLMTEILGR 112 (208)
T ss_dssp EEEEEEEEETT-----EEECSEEECCTTCCH---HHHHHHHHHHHHCC
T ss_pred cEEEEEEcCCC-----cEECCCcccCCCCCH---HHHHHHHHHHHhCC
Confidence 37999998533 999999999999887 89999999999995
No 95
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=98.20 E-value=2.9e-06 Score=86.10 Aligned_cols=109 Identities=11% Similarity=0.093 Sum_probs=72.7
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHHhc-CCCCCCCcccccccccccEEEEcCCeEEEE
Q 010868 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSF-NLDPRNNCSIILREDVGEFVHIFSHIRLKV 420 (498)
Q Consensus 342 ~~~gkvLI~KRp~~gllaGLWEFPggkve~~e~~e~~~~aL~rel~EEl-gi~v~~~~~~~~~~~l~~v~H~fsH~~l~l 420 (498)
..+|+||+. ++ .| |.+||+.++.++ .++..||..||. |++++ ....++-+.+. .+...+
T Consensus 191 ~~~g~vLL~--~~----~G-W~LPG~~~~~~~-----~~~a~RE~~EEttGl~v~------~~~L~~v~~~~-~~~~~~- 250 (321)
T 3rh7_A 191 EQQGAVFLA--GN----ET-LSLPNCTVEGGD-----PARTLAAYLEQLTGLNVT------IGFLYSVYEDK-SDGRQN- 250 (321)
T ss_dssp ESSSCEEEB--CS----SE-EBCCEEEESSSC-----HHHHHHHHHHHHHSSCEE------EEEEEEEEECT-TTCCEE-
T ss_pred EECCEEEEe--eC----CC-ccCCcccCCCCh-----hHHHHHHHHHHhcCCEEe------eceEEEEEEcC-CCceEE-
Confidence 457899999 32 57 999999776543 246669999998 99986 33333322221 122233
Q ss_pred EEEEEEEEEeCCcccccccccCCCCceeeecCCCcCCCCCC-hHHHHHHHHHHhhhhcccccCCCcc
Q 010868 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT-SGVRKVYTMVQKFKQKRLTTNSIPE 486 (498)
Q Consensus 421 ~~~~~~~~~~g~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp-~a~~kil~~L~~~~~~~~~~~~~~~ 486 (498)
.+|.|++ ..| +..+++|+++++|....+. ++++.+|+.+.+... ...|+.
T Consensus 251 i~f~~~~-~~g-----------~~~e~~~f~~~elp~~~~~~~~~~~~L~~y~~e~~----~g~f~i 301 (321)
T 3rh7_A 251 IVYHALA-SDG-----------APRQGRFLRPAELAAAKFSSSATADIINRFVLESS----IGNFGI 301 (321)
T ss_dssp EEEEEEE-CSS-----------CCSSSEEECHHHHTTCEESSHHHHHHHHHHHHTTS----CSSCC-
T ss_pred EEEEEEe-CCC-----------CeeeeEEECHHHCCCcccCCHHHHHHHHHHHHHhh----cCCCCc
Confidence 3677764 333 1257899999999998875 888899988877755 445654
No 96
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=88.81 E-value=0.76 Score=37.82 Aligned_cols=60 Identities=18% Similarity=0.312 Sum_probs=41.0
Q ss_pred HHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHHh
Q 010868 148 IHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 148 ~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~a 214 (498)
+-+|..++.++|.. +.++|- ..|+.|++.-. ..|.+ .+.++|.++||||+++|+.+...+
T Consensus 31 ~i~iN~a~~~~L~~-ipGIG~-~~A~~Il~~r~----~~g~f-~s~edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 31 LDLLNEGSARDLRS-LQRIGP-KKAQLIVGWRE----LHGPF-SQVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp HHHHHHSCHHHHHH-STTCCH-HHHHHHHHHHH----HHCCC-SSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred CeehhhCCHHHHHH-CCCCCH-HHHHHHHHHHH----hcCCc-CCHHHHHhCCCCCHHHHHHHHHCc
Confidence 45677788887754 566765 24555554421 12445 678889999999999999887553
No 97
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=85.98 E-value=1.4 Score=44.89 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=43.0
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHHh-cCC
Q 010868 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIA-FKE 217 (498)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~a-~~~ 217 (498)
+++..++.-.| .. |++.-.++|..|..-...+. +.++|.+|||||+.+|+.|.-+. -|.
T Consensus 25 ~~ia~~~e~~g-~~~r~~AYr~Aa~~l~~l~~~i~-~~~~l~~lpGIG~~~A~kI~E~l~tG~ 85 (360)
T 2ihm_A 25 ETLAEAAGFEA-NEGRLLSFSRAASVLKSLPCPVA-SLSQLHGLPYFGEHSTRVIQELLEHGT 85 (360)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHCSSCCC-SGGGGTTCTTCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCcccC-CHHHHhcCCCCCHHHHHHHHHHHHcCC
Confidence 34555555566 44 99999999998887543443 45679999999999999998663 454
No 98
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=84.89 E-value=1.6 Score=44.15 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=43.5
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHHh-cCC
Q 010868 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIA-FKE 217 (498)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~a-~~~ 217 (498)
+++..++.-.|-.. |++...++|..|..-...+ .+.++|.+|||||+.+|+.|.-+. -|.
T Consensus 20 ~~ia~l~e~~~~~~~rv~AYr~Aa~~l~~l~~~i-~~~~~l~~LpGIG~~~A~kI~E~l~tG~ 81 (335)
T 2fmp_A 20 TELANFEKNVSQAIHKYNAYRKAASVIAKYPHKI-KSGAEAKKLPGVGTKIAEKIDEFLATGK 81 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHCSSCC-CCHHHHHTSTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCccc-cCHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 45555555455444 9999999999887754444 356679999999999999998663 444
No 99
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=84.36 E-value=1.7 Score=44.72 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=42.4
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHH-hcCC
Q 010868 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI-AFKE 217 (498)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~-a~~~ 217 (498)
+++..++.-.| .. |++...++|..|......+. +.++|.+|||||+.+|+.|.-+ .-|.
T Consensus 44 ~~ia~~~e~~g-~~~rv~AYr~Aa~~l~~l~~~i~-~~~~l~~lpGIG~~ia~kI~E~l~tG~ 104 (381)
T 1jms_A 44 DILAENDELRE-NEGSCLAFMRASSVLKSLPFPIT-SMKDTEGIPCLGDKVKSIIEGIIEDGE 104 (381)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHTCSSCCC-SGGGGTTCSSCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhC-CcHHHHHHHHHHHHHHhCCcccc-CHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34445555566 44 99999999998876543333 4567999999999999999866 3454
No 100
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=83.64 E-value=0.9 Score=35.32 Aligned_cols=53 Identities=38% Similarity=0.391 Sum_probs=30.2
Q ss_pred HHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHH
Q 010868 149 HHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 149 ~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~ 212 (498)
-++..++.++|.. +.|+|- .+|+.|++ .. --.+.++|.+++|||+++++.+.-
T Consensus 19 idiN~a~~~~L~~-ipGIG~-~~A~~Il~-------~r--~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 19 VSLNEASLEELMA-LPGIGP-VLARRIVE-------GR--PYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp EETTTCCHHHHTT-STTCCH-HHHHHHHH-------TC--CCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred cChhhCCHHHHHh-CCCCCH-HHHHHHHH-------Hc--ccCCHHHHHhCCCCCHHHHHHHHH
Confidence 3455666666544 344443 14444433 21 125677788888888888777643
No 101
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=83.52 E-value=0.58 Score=36.42 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.8
Q ss_pred chhhhhcCCCCcHHHHHHHHHH
Q 010868 192 TVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~~ 213 (498)
+.++|.++||||+++|..|+.+
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHT
T ss_pred CHHHHHhCCCCCHHHHHHHHHH
Confidence 5678999999999999999975
No 102
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=83.39 E-value=2 Score=43.29 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=35.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHH
Q 010868 158 EVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 158 el~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
++..++.-.|=..|++...++|..|.....++ .+.++|.+|||||+.+|+.|.-+
T Consensus 22 ~ia~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i-~~~~~l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 22 VLAKAYSVQGDKWRALGYAKAINALKSFHKPV-TSYQEACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSCCSCC-CCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCccHhHHHHHHHHHHHHhCCccc-cCHHHHhcCCCccHHHHHHHHHH
Confidence 33344443443347777888888776543333 34567888899998888888765
No 103
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=80.90 E-value=0.88 Score=42.95 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=22.3
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCCc
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~p 218 (498)
+..++|.+|||||+|||.=+..+-+.++
T Consensus 23 ~LI~~l~~LPGIG~KsA~RlA~hLL~~~ 50 (212)
T 3vdp_A 23 KLIEELSKLPGIGPKTAQRLAFFIINMP 50 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 3457889999999999988877766554
No 104
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=80.07 E-value=4.5 Score=37.30 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCC--CHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHH
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWP--TIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVA 184 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fP--t~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~ 184 (498)
+--||.|+-+++-.=.++.++..-...|.+.|- +|+.+|..++++|+.++..-|.-+ |.+.++.-|+.+++
T Consensus 29 ~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~Ll~d~~IIRnr~KI~A~i~NA~~~l~ 104 (183)
T 2ofk_A 29 RKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLA 104 (183)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHH
Confidence 347899999999888999999999999999985 899999999999999999988854 67788888888775
No 105
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=80.03 E-value=0.95 Score=42.38 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=32.2
Q ss_pred CCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhccc
Q 010868 187 DGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAIS 237 (498)
Q Consensus 187 g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i~ 237 (498)
+.+-.+.++|..|||||+++|..|+.+=-.-|+- .+.-+..|+.++.
T Consensus 125 ~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~----s~eDL~~RV~GIg 171 (205)
T 2i5h_A 125 DSITTRMHQLELLPGVGKKMMWAIIEERKKRPFE----SFEDIAQRVKGIQ 171 (205)
T ss_dssp CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCC----SHHHHHHHSTTCC
T ss_pred CCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCC----CHHHHHHhcCCCC
Confidence 4555678999999999999999999774222332 2334556666653
No 106
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=79.48 E-value=1.1 Score=34.36 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=18.4
Q ss_pred CchhhhhcCCCCcHHHHHHHHHH
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
.+.++|.++||||+++|..|..+
T Consensus 43 a~~~~L~~i~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 43 ASVAELMKVEGIGEKIAKEIRRV 65 (75)
T ss_dssp CCHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCHHHHhcCCCCCHHHHHHHHHH
Confidence 35678888999999998888764
No 107
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=78.33 E-value=1.2 Score=42.53 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=22.4
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCCc
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~p 218 (498)
+.+++|.+|||||+|||.=+..+-+.++
T Consensus 9 ~LI~~l~~LPGIG~KSA~RlA~hLL~~~ 36 (228)
T 1vdd_A 9 SLIRELSRLPGIGPKSAQRLAFHLFEQP 36 (228)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHSSSC
T ss_pred HHHHHHhHCCCCCHHHHHHHHHHHHcCC
Confidence 3467889999999999988877766554
No 108
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=78.17 E-value=5.1 Score=36.99 Aligned_cols=71 Identities=7% Similarity=0.084 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCC--CHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHH
Q 010868 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWP--TIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVA 184 (498)
Q Consensus 114 ~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fP--t~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~ 184 (498)
+--||.|+=+.+-.=.++.++..-...|.+.|- +|+.+|..++++|+.++..-|.-+ |.+.++.-|+.+++
T Consensus 29 ~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~Ll~d~gIIRnr~KI~A~i~NA~~~l~ 104 (186)
T 2jg6_A 29 KALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLK 104 (186)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHH
Confidence 347899999999888999999999999999985 899999999999999999988854 67778888887775
No 109
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=77.94 E-value=4.7 Score=30.35 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHH
Q 010868 137 YYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGA 179 (498)
Q Consensus 137 ~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a 179 (498)
-..+|+..|.+++.|.+|+.+||.++ +|-..+|+.|.+..
T Consensus 16 r~~~LL~~Fgs~~~i~~As~eeL~~v---ig~~~~A~~I~~~l 55 (63)
T 2a1j_A 16 NCRSLMHHVKNIAELAALSQDELTSI---LGNAANAKQLYDFI 55 (63)
T ss_dssp HHHHHHHHCSSHHHHHTCCHHHHHHH---HSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHCCHHHHHHH---cCchHHHHHHHHHH
Confidence 34578889999999999999999888 56322488886643
No 110
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=77.86 E-value=1 Score=39.45 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=11.9
Q ss_pred CchhhhhcCCCCcHHHHHHH
Q 010868 191 NTVSDLRKVPGIGNYTAGAI 210 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~i 210 (498)
.+.++|..++|||+++.+.+
T Consensus 86 ~svedL~~V~GIg~k~~e~l 105 (134)
T 1s5l_U 86 ESVEDVLNIPGLTERQKQIL 105 (134)
T ss_dssp SSGGGGGGCTTCCHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHH
Confidence 35666666666666655544
No 111
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=77.73 E-value=1.5 Score=35.16 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.1
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHh
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a 214 (498)
.+.++|.++||||+++|..|..+-
T Consensus 48 a~~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 48 ASREDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHH
Confidence 356788899999999988887654
No 112
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=77.52 E-value=1.1 Score=37.12 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=20.1
Q ss_pred CchhhhhcCCCCcHHHHHHHHH
Q 010868 191 NTVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~ 212 (498)
.+.++|.+|||||+.+|..|..
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHH
T ss_pred CCHHHHhHCCCCCHHHHHHHHH
Confidence 3678999999999999999998
No 113
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=77.12 E-value=1.3 Score=38.76 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=19.7
Q ss_pred CchhhhhcCCCCcHHHHHHHHH
Q 010868 191 NTVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~ 212 (498)
.+.++|.+|||||+..|..|..
T Consensus 60 A~~~eL~~LpGiGp~~A~~II~ 81 (134)
T 1s5l_U 60 TNIAAFIQYRGLYPTLAKLIVK 81 (134)
T ss_dssp SCGGGGGGSTTCTHHHHHHHHH
T ss_pred cCHHHHHHCCCCCHHHHHHHHH
Confidence 3578999999999999999994
No 114
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=77.09 E-value=1.4 Score=41.77 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCchhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 190 PNTVSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 190 p~~~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
.++.+.|.++||||++||+-|..---++
T Consensus 119 ~~d~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 119 DGNVAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp TTCHHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred hCCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999887644443
No 115
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=76.06 E-value=1.2 Score=34.88 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=13.0
Q ss_pred chhhhhcCCCCcHHHHHHHHH
Q 010868 192 TVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~ 212 (498)
+.++|.++||||+++|..|..
T Consensus 54 ~~eeL~~i~GIG~~~a~~I~~ 74 (78)
T 1kft_A 54 SVEEIAKVPGISQGLAEKIFW 74 (78)
T ss_dssp CHHHHTTSSSTTSHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHH
Confidence 455666666666666666554
No 116
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=74.24 E-value=2.7 Score=45.67 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=25.7
Q ss_pred chhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhh
Q 010868 192 TVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLK 234 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~ 234 (498)
+.++|.+++|||+.+|+.|..|- -|-+.+.++.+|.
T Consensus 542 ~~e~l~~i~giG~~~A~si~~ff-------~~~~n~~~i~~L~ 577 (586)
T 4glx_A 542 SIEELQKVPDVGIVVASHVHNFF-------AEESNRNVISELL 577 (586)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHH-------HSHHHHHHHHHHH
T ss_pred CHHHHhcCCCccHHHHHHHHHHH-------cCHHHHHHHHHHH
Confidence 56789999999999999988763 2344555555553
No 117
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=73.66 E-value=1.5 Score=35.38 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.9
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHh
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a 214 (498)
.+.++|.+++|||+++|..|..+.
T Consensus 61 as~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 61 ASREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp CCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHH
Confidence 457889999999999999887654
No 118
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=72.70 E-value=7.1 Score=31.29 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHH
Q 010868 137 YYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGA 179 (498)
Q Consensus 137 ~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a 179 (498)
...+|+..|.+++.|.+|+.+||.++ +|-..+|+.|.+..
T Consensus 30 r~~~LL~~FgSl~~i~~AS~eEL~~v---ig~~~~A~~I~~~l 69 (84)
T 1z00_B 30 NCRSLMHHVKNIAELAALSQDELTSI---LGNAANAKQLYDFI 69 (84)
T ss_dssp HHHHHHHHSSCHHHHHHSCHHHHHHH---HSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHCCHHHHHHH---hCchHHHHHHHHHH
Confidence 34578889999999999999999888 56433488887654
No 119
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=71.44 E-value=1.8 Score=40.87 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=26.9
Q ss_pred hhhhcCCCCcHHHHHHHHHHhcCCcc---cccccchhhHHH
Q 010868 194 SDLRKVPGIGNYTAGAIASIAFKEVV---PVVDGNVIRVLA 231 (498)
Q Consensus 194 ~~L~~LpGIG~~TA~~il~~a~~~p~---~~VD~~v~Rvl~ 231 (498)
..|.+++||||++|-.|+. .|+... .+++.++.++..
T Consensus 88 ~~L~sv~GIGpk~A~~Ils-~~~~~~l~~aI~~~d~~~L~~ 127 (212)
T 2ztd_A 88 LTLLSVSGVGPRLAMAALA-VHDAPALRQVLADGNVAALTR 127 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHH-HSCHHHHHHHHHTTCHHHHHT
T ss_pred HHhcCcCCcCHHHHHHHHH-hCCHHHHHHHHHhCCHHHHhh
Confidence 4588999999999999997 455432 256666666543
No 120
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=71.08 E-value=2.3 Score=32.12 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.2
Q ss_pred hhhhhcCCCCcHHHHHHHHH
Q 010868 193 VSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~ 212 (498)
.+.|.++||||++++..+|.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~ 22 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMH 22 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHH
T ss_pred HhHHHcCCCCCHHHHHHHHH
Confidence 45788999999999988875
No 121
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=70.18 E-value=1.7 Score=36.05 Aligned_cols=57 Identities=14% Similarity=0.334 Sum_probs=39.8
Q ss_pred CCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHH
Q 010868 145 WPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 145 fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~ 212 (498)
.+..-+|-.|+.++|.. +.|+|. .+|+.|++ +|.+ .++++|.+++|||+++.+-+.-
T Consensus 14 ~~~~vdiNtAs~~eL~~-lpGIG~-~~A~~IV~--------~GpF-~s~edL~~V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 14 YGEKIDLNNTNIAAFIQ-YRGLYP-TLAKLIVK--------NAPY-ESVEDVLNIPGLTERQKQILRE 70 (97)
T ss_dssp GGTSEETTTSCGGGGGG-STTCTT-HHHHHHHH--------HCCC-SSGGGGGGCTTCCHHHHHHHHH
T ss_pred cCCceeCCcCCHHHHhH-CCCCCH-HHHHHHHH--------cCCC-CCHHHHHhccCCCHHHHHHHHH
Confidence 34445677788888755 455554 25666655 2433 5789999999999999888764
No 122
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=69.95 E-value=2.3 Score=34.86 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.0
Q ss_pred chhhhhcCCCCcHHHHHHHHHH
Q 010868 192 TVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~~ 213 (498)
+.++|.++||||+.+|..|+.+
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~ 59 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGW 59 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHH
Confidence 5678999999999999999987
No 123
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=69.65 E-value=5.3 Score=32.28 Aligned_cols=41 Identities=2% Similarity=0.004 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHH
Q 010868 171 RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 171 RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~ 212 (498)
++.....++..|......+ .+.+++..|+|||+++|+.|--
T Consensus 36 ~~~~Y~KA~~sLk~~P~~i-~s~~e~~~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 36 TRFVFQKALRSLQRYPLPL-RSGKEAKILQHFGDRLCRMLDE 76 (87)
T ss_dssp THHHHHHHHHHHHHCCSCC-CSHHHHHTCTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCC-CCHHHHHHhhcccHHHHHHHHH
Confidence 4666667777776643222 4678999999999999998743
No 124
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=67.55 E-value=22 Score=34.65 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=44.0
Q ss_pred HHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHHhc
Q 010868 139 NRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAF 215 (498)
Q Consensus 139 ~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~a~ 215 (498)
..+++.|-++..+.+.+.++++.+.....++. ||..=+. ..+|.+-.|||++||+-+| .||
T Consensus 368 deliehfesiagilatdleeiermyeegrlseeayraaveiq---------------laeltkkegvgrktaerll-raf 431 (519)
T 2csb_A 368 DELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQ---------------LAELTKKEGVGRKTAERLL-RAF 431 (519)
T ss_dssp HHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHHHH---------------HHHHHTSTTCCHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHcccccHHHHHHHHHHH---------------HHHHhhhcccchhHHHHHH-HHh
Confidence 34566688888888888888887766655543 3322222 3456777899999998754 578
Q ss_pred CCc
Q 010868 216 KEV 218 (498)
Q Consensus 216 ~~p 218 (498)
|.|
T Consensus 432 gnp 434 (519)
T 2csb_A 432 GNP 434 (519)
T ss_dssp SSH
T ss_pred CCH
Confidence 776
No 125
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=65.24 E-value=3.4 Score=38.34 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=22.1
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
.+.++|.++||||++||.-|...--++
T Consensus 104 ~d~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 104 GDARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp TCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999997644333
No 126
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=64.04 E-value=3.6 Score=38.52 Aligned_cols=24 Identities=38% Similarity=0.500 Sum_probs=20.8
Q ss_pred CchhhhhcCCCCcHHHHHHHHHHh
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~a 214 (498)
.+.++|.++||||++||.-|...-
T Consensus 105 ~d~~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 105 EEVGALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp TCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHH
Confidence 578999999999999999987543
No 127
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=63.98 E-value=3.8 Score=32.92 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=18.2
Q ss_pred chhhhhcCCCCcHHHHHHHHHH
Q 010868 192 TVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~~ 213 (498)
....|.+|||||++.+..+|..
T Consensus 16 ~~s~L~~IpGIG~kr~~~LL~~ 37 (84)
T 1z00_B 16 PQDFLLKMPGVNAKNCRSLMHH 37 (84)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 3467899999999999888753
No 128
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=63.41 E-value=4.1 Score=44.92 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=15.2
Q ss_pred chhhhhcCCCCcHHHHHHHHHH
Q 010868 192 TVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~~ 213 (498)
+.++|.+++|||+.+|+.|..|
T Consensus 537 s~eeL~~I~GIG~~~A~sI~~f 558 (667)
T 1dgs_A 537 SLEELIEVEEVGELTARAILET 558 (667)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHH
T ss_pred CHHHHHhccCcCHHHHHHHHHH
Confidence 4566777777777777777654
No 129
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=60.20 E-value=4.3 Score=37.60 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=23.8
Q ss_pred hhhhcCCCCcHHHHHHHHHHhcCCcc---cccccchhhH
Q 010868 194 SDLRKVPGIGNYTAGAIASIAFKEVV---PVVDGNVIRV 229 (498)
Q Consensus 194 ~~L~~LpGIG~~TA~~il~~a~~~p~---~~VD~~v~Rv 229 (498)
..|.+++||||++|..||.. |+-.. .+.+..+.++
T Consensus 72 ~~L~~v~GIGpk~A~~iL~~-f~~~~l~~aI~~~d~~~L 109 (191)
T 1ixr_A 72 ELLLSVSGVGPKVALALLSA-LPPRLLARALLEGDARLL 109 (191)
T ss_dssp HHHHSSSCCCHHHHHHHHHH-SCHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCcCHHHHHHHHHh-CChHHHHHHHHhCCHHHH
Confidence 45889999999999999974 44422 2444444443
No 130
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=58.60 E-value=4.2 Score=31.62 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=19.5
Q ss_pred hhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 193 VSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
...|..+||||+++|..++.. ||-
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~-fgs 46 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY-MGG 46 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH-HSC
T ss_pred HHHHhcCCCCCHHHHHHHHHH-cCC
Confidence 456889999999999998865 553
No 131
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=56.32 E-value=4.4 Score=40.79 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.7
Q ss_pred CCchhhhhcCCCCcHHHHHHHHHH
Q 010868 190 PNTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 190 p~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
|....+|+++||||++||..+---
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHc
Confidence 567889999999999999988544
No 132
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=54.76 E-value=19 Score=39.70 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=18.2
Q ss_pred CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHH
Q 010868 146 PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEG 178 (498)
Q Consensus 146 Pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~ 178 (498)
-++.+|..+..++|..+ -||.. .|.+|++.
T Consensus 469 ~~~aDL~~L~~~~L~~l---~gfG~Ksa~nLl~a 499 (671)
T 2owo_A 469 HTPADLFKLTAGKLTGL---ERMGPKSAQNVVNA 499 (671)
T ss_dssp SSGGGGGTCCHHHHHTS---TTCCHHHHHHHHHH
T ss_pred CCHHHHHhhCHHHhhcc---cccchhHHHHHHHH
Confidence 36777777776665332 35555 57777665
No 133
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=54.29 E-value=7.2 Score=31.05 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=19.1
Q ss_pred hhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 193 VSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
...|..+||||+++|..++.. ||-
T Consensus 18 ~~~L~~IpgIG~~~A~~Ll~~-fgs 41 (89)
T 1z00_A 18 TECLTTVKSVNKTDSQTLLTT-FGS 41 (89)
T ss_dssp HHHHTTSSSCCHHHHHHHHHH-TCB
T ss_pred HHHHHcCCCCCHHHHHHHHHH-CCC
Confidence 356789999999999998864 553
No 134
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=53.58 E-value=6 Score=36.97 Aligned_cols=35 Identities=29% Similarity=0.186 Sum_probs=23.7
Q ss_pred hhhhcCCCCcHHHHHHHHHHhcCCc---ccccccchhhH
Q 010868 194 SDLRKVPGIGNYTAGAIASIAFKEV---VPVVDGNVIRV 229 (498)
Q Consensus 194 ~~L~~LpGIG~~TA~~il~~a~~~p---~~~VD~~v~Rv 229 (498)
..|.+++||||++|-.||.. |+-. ..+.+..+.++
T Consensus 73 ~~L~~V~GIGpk~A~~iL~~-f~~~~l~~aI~~~d~~~L 110 (203)
T 1cuk_A 73 KELIKTNGVGPKLALAILSG-MSAQQFVNAVEREEVGAL 110 (203)
T ss_dssp HHHHHSSSCCHHHHHHHHHH-SCHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCcCHHHHHHHHhh-CChHHHHHHHHhCCHHHH
Confidence 35789999999999999983 4442 22445544443
No 135
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=51.28 E-value=11 Score=35.23 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=17.2
Q ss_pred CchhhhhcCCCCcHHHHHHHHHH
Q 010868 191 NTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 191 ~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
.+.++|.++||||+++|..|..+
T Consensus 191 a~~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 191 ASKAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp CCHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHHH
Confidence 45677888888888888877654
No 136
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=50.81 E-value=7.5 Score=29.43 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=18.8
Q ss_pred hhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 194 SDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 194 ~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
..|..+||||+.+|..++. .||-
T Consensus 14 ~~L~~i~giG~~~a~~Ll~-~fgs 36 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLK-HFGS 36 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHH-HHCS
T ss_pred HHHcCCCCCCHHHHHHHHH-HcCC
Confidence 4688999999999999887 4554
No 137
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=50.31 E-value=8.1 Score=30.95 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=18.8
Q ss_pred hhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 193 VSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
...|..+||||+++|..++.. ||-
T Consensus 31 ~~~L~~IpgIG~~~A~~Ll~~-fgs 54 (91)
T 2a1j_B 31 TECLTTVKSVNKTDSQTLLTT-FGS 54 (91)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HSS
T ss_pred HHHHHcCCCCCHHHHHHHHHH-CCC
Confidence 345779999999999988764 554
No 138
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=49.00 E-value=21 Score=37.12 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=35.5
Q ss_pred HHHHHhhhccHHH---HHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHH
Q 010868 121 VSEVMLQQTRVQT---VIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEG 178 (498)
Q Consensus 121 Vs~Il~QqT~~~~---v~~~~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~ 178 (498)
++.|+.-+|-+.. +.. -..+..+|.+..++..++.+|+ +.+||+. +...|+.+
T Consensus 512 arrI~gl~~l~~~~~d~~~-a~elkr~ygs~savr~~pv~el----relg~sd~~ia~ikgi 568 (685)
T 4gfj_A 512 IRELKGLKTLESIVGDLEK-ADELKRKYGSASAVRRLPVEEL----RELGFSDDEIAEIKGI 568 (685)
T ss_dssp HHHHHTCHHHHHHSSSHHH-HHHHHHHSSCHHHHHHSCHHHH----HTTSCCHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHhcchhh-HHHHHHhhccHHHHHhccHHHH----HHcCCchhhHHHhcCC
Confidence 4555555543332 122 2357788999999999999996 7899987 55555543
No 139
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=48.24 E-value=19 Score=27.78 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHH
Q 010868 172 ARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAG 208 (498)
Q Consensus 172 A~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~ 208 (498)
-..|.++|+. .|.+.++|..++|||++-.+
T Consensus 32 d~~L~~iA~~-------~P~t~~eL~~i~Gvg~~k~~ 61 (77)
T 2rhf_A 32 NATLEALAAR-------QPRTLAELAEVPGLGEKRIE 61 (77)
T ss_dssp HHHHHHHHHH-------CCCSHHHHTTSTTTCHHHHH
T ss_pred HHHHHHHHHh-------CCCCHHHHhhCCCCCHHHHH
Confidence 3456666654 69999999999999987654
No 140
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=47.15 E-value=16 Score=28.03 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=31.7
Q ss_pred HHHHh-CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHH
Q 010868 140 RWMTK-WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKM 181 (498)
Q Consensus 140 ~l~~~-fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~ 181 (498)
+|.+. +-|.++||.++.++|..+ .|+.. ||..|+..|+.
T Consensus 22 kL~e~Gi~TvedlA~~~~~eL~~i---~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 22 KLAARGVCTLEDLAEQGIDDLADI---EGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHTTTCCSHHHHHTSCHHHHHTS---SSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHcCCHHHHHHc---cCCCHHHHHHHHHHHHH
Confidence 44443 789999999999998664 58877 99999999986
No 141
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=47.08 E-value=4 Score=44.48 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=0.0
Q ss_pred chhhhhcCCCCcHHHHHHHHHHh
Q 010868 192 TVSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~~a 214 (498)
+.++|.+++|||+.+|..|..|-
T Consensus 559 s~eeL~~I~GIG~~~A~sI~~ff 581 (615)
T 3sgi_A 559 STDQLAAVEGVGPTIAAAVTEWF 581 (615)
T ss_dssp -----------------------
T ss_pred CHHHHhhCCCCCHHHHHHHHHHH
Confidence 56788999999999999887654
No 142
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=44.08 E-value=4.8 Score=38.73 Aligned_cols=25 Identities=20% Similarity=0.504 Sum_probs=0.0
Q ss_pred hhhhhcCCCCcHHHHHHHHHHhcCC
Q 010868 193 VSDLRKVPGIGNYTAGAIASIAFKE 217 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~a~~~ 217 (498)
...|.+|||||+++|..++..+|+-
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~gf~s 38 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREAGFES 38 (241)
T ss_dssp -------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHcCCCC
Confidence 4567788888888888887765554
No 143
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=43.70 E-value=21 Score=28.21 Aligned_cols=31 Identities=13% Similarity=0.077 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHH
Q 010868 171 RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAG 208 (498)
Q Consensus 171 RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~ 208 (498)
.-..|.++|+. .|.+.++|..++|||+.-.+
T Consensus 33 ~d~tL~~iA~~-------~P~t~~eL~~i~Gvg~~k~~ 63 (85)
T 2kv2_A 33 NTVTLKKLAES-------LSSDPEVLLQIDGVTEDKLE 63 (85)
T ss_dssp CHHHHHHHHHH-------CCSCHHHHHTSSSCCHHHHH
T ss_pred CHHHHHHHHHh-------CCCCHHHHhhCCCCCHHHHH
Confidence 34556666654 69999999999999986433
No 144
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=43.68 E-value=22 Score=28.92 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=30.3
Q ss_pred hhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhhhcc
Q 010868 193 VSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAI 236 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl~~i 236 (498)
..+|..||+||+.++..+...+..-+.=.-+..-.....|+-..
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~ 46 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWEN 46 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTT
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHH
Confidence 46799999999999999988877765433344444444455433
No 145
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=42.18 E-value=11 Score=38.66 Aligned_cols=34 Identities=35% Similarity=0.376 Sum_probs=22.9
Q ss_pred HHHHHHHcCCCC----CCchhhhhcCCCCcHHHHHHHH
Q 010868 178 GAKMIVAEGDGF----PNTVSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 178 ~a~~i~~~~g~~----p~~~~~L~~LpGIG~~TA~~il 211 (498)
+|+.++++.|.+ -.+.++|.++.|||+++|..|.
T Consensus 327 iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 327 IGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp HHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHH
Confidence 366666665543 3567788888888888887663
No 146
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=41.90 E-value=26 Score=27.94 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHH
Q 010868 172 ARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAG 208 (498)
Q Consensus 172 A~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~ 208 (498)
-..|.++|+. .|.+.++|..++|||+.-+.
T Consensus 40 D~tL~eiA~~-------~P~t~~eL~~i~Gvg~~k~~ 69 (89)
T 1wud_A 40 DATLIEMAEQ-------MPITASEMLSVNGVGMRKLE 69 (89)
T ss_dssp HHHHHHHHHH-------CCCSHHHHHTSTTCCHHHHH
T ss_pred HHHHHHHHHh-------CCCCHHHHhhCCCCCHHHHH
Confidence 4556666654 69999999999999985443
No 147
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=41.54 E-value=15 Score=36.95 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=15.7
Q ss_pred hhhhcCCCCcHHHHHHHHHH
Q 010868 194 SDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 194 ~~L~~LpGIG~~TA~~il~~ 213 (498)
+.|.++||||++||..+-.-
T Consensus 96 ~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 96 ELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp HHHHTSTTCCHHHHHHHHHT
T ss_pred HHHhcCCCcCHHHHHHHHHc
Confidence 33469999999999988543
No 148
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=41.27 E-value=9.9 Score=41.03 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=23.6
Q ss_pred CCCchhhhhcCCCCcHHHHHHHHHHhcC
Q 010868 189 FPNTVSDLRKVPGIGNYTAGAIASIAFK 216 (498)
Q Consensus 189 ~p~~~~~L~~LpGIG~~TA~~il~~a~~ 216 (498)
.+....+|++++||||++|..++.-++.
T Consensus 92 ~~~~~~~L~~v~GVGpk~A~~i~~~G~~ 119 (578)
T 2w9m_A 92 LPPGLLDLLGVRGLGPKKIRSLWLAGID 119 (578)
T ss_dssp SCHHHHHHTTSTTCCHHHHHHHHHTTCC
T ss_pred hHHHHHHHhCCCCcCHHHHHHHHHcCCC
Confidence 4667889999999999999999976443
No 149
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=40.30 E-value=34 Score=33.81 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=33.9
Q ss_pred hccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 010868 164 AGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 164 ~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il 211 (498)
...|+.+ |.++.++++.|..+ -.+++ ..|.+|||||+..+..+-
T Consensus 131 ~~~g~~~-~~~~l~L~q~i~q~--~w~~~-~pL~Qlp~i~~~~~~~l~ 174 (328)
T 3im1_A 131 SANGYLN-ATTAMDLAQMLIQG--VWDVD-NPLRQIPHFNNKILEKCK 174 (328)
T ss_dssp HHTTBTT-HHHHHHHHHHHHHT--SCTTS-CGGGGSTTCCHHHHHHHH
T ss_pred HcCCcHH-HHHHHHHHHHHHhh--cCCCC-CceeCCCCCCHHHHHHHH
Confidence 3568777 99999999999884 23333 569999999999887643
No 150
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=39.65 E-value=26 Score=29.00 Aligned_cols=31 Identities=29% Similarity=0.548 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHH
Q 010868 171 RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAG 208 (498)
Q Consensus 171 RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~ 208 (498)
.-..|.++|+. .|.+.++|..++|||+.-..
T Consensus 41 ~D~tL~emA~~-------~P~t~~eL~~I~Gvg~~K~~ 71 (103)
T 2e1f_A 41 TNKILVDMAKM-------RPTTVENVKRIDGVSEGKAA 71 (103)
T ss_dssp CHHHHHHHHHH-------CCCSHHHHTTSTTCCHHHHH
T ss_pred CHHHHHHHHHh-------CCCCHHHHhcCCCCCHHHHH
Confidence 34556666654 69999999999999986554
No 151
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=38.49 E-value=8.9 Score=38.94 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=21.2
Q ss_pred CCCCchhhhhcCCCCcHHHHHHHHHH
Q 010868 188 GFPNTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 188 ~~p~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
..|..+.+|+++||||++||..+-.-
T Consensus 96 ~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 96 ERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 35666788999999999999988543
No 152
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=37.85 E-value=23 Score=36.14 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=35.7
Q ss_pred HHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 010868 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVA 184 (498)
Q Consensus 138 ~~~l~~~fPt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~ 184 (498)
..++.+.|.|++.+.+|+.+||.++ .|+|= .||+.|++....+..
T Consensus 328 ae~Lv~~FGsLq~Il~AS~eEL~~V-eGIGe-~rAr~IregL~r~~~ 372 (377)
T 3c1y_A 328 GYNVVRMFKTLDQISKASVEDLKKV-EGIGE-KRARAISESISSLKH 372 (377)
T ss_dssp HHHHHHHHCSHHHHTTCCHHHHTTS-TTCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHhCCHHHHHhc-cCccH-HHHHHHHHHHHHHhc
Confidence 4578889999999999999998554 44442 389999998887764
No 153
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=36.10 E-value=30 Score=28.17 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=22.4
Q ss_pred chhhhhcCCCCcHHHHHHHHHHhcCCc
Q 010868 192 TVSDLRKVPGIGNYTAGAIASIAFKEV 218 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il~~a~~~p 218 (498)
++.+|..||+||+.++..+...+..-+
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~GI~t~ 28 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKAGIKTP 28 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHTTCCSH
T ss_pred CHHHHhhCCCCCHHHHHHHHHcCCCCH
Confidence 356899999999999999988887765
No 154
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=36.04 E-value=20 Score=30.47 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.1
Q ss_pred hhhhhcCCCCcHHHHHHHHHHh
Q 010868 193 VSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~a 214 (498)
.-.|..+.|||+.+|..|+.-+
T Consensus 15 ~~aLt~I~GIG~~~A~~I~~~~ 36 (114)
T 3r8n_M 15 VIALTSIYGVGKTRSKAILAAA 36 (114)
T ss_dssp HHHGGGSTTCCHHHHHHHHHHT
T ss_pred HhhHhhhcCcCHHHHHHHHHHc
Confidence 3578999999999999999764
No 155
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=35.32 E-value=32 Score=28.22 Aligned_cols=31 Identities=13% Similarity=0.077 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHH
Q 010868 171 RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAG 208 (498)
Q Consensus 171 RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~ 208 (498)
.-..|.++|+. .|.+.++|..++|||+.-..
T Consensus 48 ~D~tL~eiA~~-------~P~t~~eL~~I~Gvg~~k~~ 78 (101)
T 2rrd_A 48 NTVTLKKLAES-------LSSDPEVLLQIDGVTEDKLE 78 (101)
T ss_dssp CHHHHHHHHHH-------CCCCHHHHHTSTTCCHHHHH
T ss_pred CHHHHHHHHHh-------CCCCHHHHhhCCCCCHHHHH
Confidence 34566676664 69999999999999986544
No 156
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=35.25 E-value=14 Score=39.82 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.0
Q ss_pred CCCchhhhhcCCCCcHHHHHHHHHH
Q 010868 189 FPNTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 189 ~p~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
.++....|++++||||+||-.++..
T Consensus 88 ~~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 88 VPRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp SCHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred hHHHHHHHhcCCCcCHHHHHHHHHh
Confidence 4667889999999999999999875
No 157
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=34.08 E-value=12 Score=38.44 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=21.3
Q ss_pred CCCCchhhhhcCCCCcHHHHHHHHHH
Q 010868 188 GFPNTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 188 ~~p~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
.+|..+.+|+++||||++||..+-.-
T Consensus 115 ~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 115 ERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchhHHHHHHccCCCCHHHHHHHHHc
Confidence 45667789999999999999988443
No 158
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=33.37 E-value=2.9e+02 Score=29.79 Aligned_cols=66 Identities=23% Similarity=0.178 Sum_probs=42.0
Q ss_pred hccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHHhcCCcccccccchhhHHHhh
Q 010868 164 AGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARL 233 (498)
Q Consensus 164 ~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~a~~~p~~~VD~~v~Rvl~Rl 233 (498)
..+|...-+..+..+++.|.. .++...-.|++|||||+..|..+-..++..+.-+. .....+..-+
T Consensus 630 ~~~~~~~~~~~l~~l~~rl~~---gv~~e~~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~l 695 (715)
T 2va8_A 630 RELKLNEHADKLRILNLRVRD---GIKEELLELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNLL 695 (715)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH---TCCGGGHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHc---CCChhhcchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHHh
Confidence 345665445666666666655 36777888999999999999987666664432222 4444444433
No 159
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=32.73 E-value=24 Score=31.28 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.2
Q ss_pred hhhhhcCCCCcHHHHHHHHHHh
Q 010868 193 VSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~a 214 (498)
.-.|..+.|||+.+|..|+.-+
T Consensus 29 ~~ALt~I~GIG~~~A~~I~~~~ 50 (146)
T 3u5c_S 29 VYALTTIKGVGRRYSNLVCKKA 50 (146)
T ss_dssp TTTGGGSTTCCHHHHHHHHHHH
T ss_pred HhhHhhhcCCCHHHHHHHHHHc
Confidence 3579999999999999999765
No 160
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=31.32 E-value=44 Score=32.63 Aligned_cols=111 Identities=15% Similarity=0.048 Sum_probs=67.5
Q ss_pred ccccccccccCCCCCcccccccccccchhhhhhhhhhhhcccccccCCCCcchhhhhhcCHHHHHHHHHHHHHHHhhCC-
Q 010868 17 LELRTSLTSSSRSTPFEQNSSFWSLTMDNERKTKKKKERQLPEKKTALPLEEEDIEDLFSEKEVKKIRQSLLQWYDKNQ- 95 (498)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~wy~~~~- 95 (498)
+-.+..+.|+.+++|||-+.++|... +.++ ..+..+..+|..-|+...
T Consensus 101 ~~~~~~glR~~~~dpfE~Lv~~IlsQ------------------q~s~-------------~~a~~~~~rL~~~~G~~~~ 149 (290)
T 3i0w_A 101 SVDFGEGIRILRQDPFEILLSFIISA------------------NNRI-------------PMIKKCINNISEKAGKKLE 149 (290)
T ss_dssp HHHHTTTCCCCCCCHHHHHHHHHHHT------------------TCCH-------------HHHHHHHHHHHHHHSCEEE
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHhC------------------cccH-------------HHHHHHHHHHHHHhCCCcc
Confidence 33467888999999999999999877 3322 455577788888776421
Q ss_pred ------CCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHH---hcc
Q 010868 96 ------RELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMW---AGL 166 (498)
Q Consensus 96 ------r~lpwr~~~~~~~~~~~~~dp~~~lVs~Il~QqT~~~~v~~~~~~l~~~fPt~~~La~a~~eel~~~i---~~l 166 (498)
+.+|-- +.+..-+-+.|-..=++. +.+.....-..+.+...+.+.|...+.++..+.| .|+
T Consensus 150 ~~g~~~~~fPtp--------e~la~~~~e~L~~~g~g~--Ra~~I~~~A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGI 219 (290)
T 3i0w_A 150 YKGKIYYAFPTV--------DKLHEFTEKDFEECTAGF--RAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGV 219 (290)
T ss_dssp ETTEEEECCCCH--------HHHTTCCHHHHHHTTCGG--GHHHHHHHHHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTC
T ss_pred cCCcccccCCcH--------HHHHCCCHHHHHHcCCch--HHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCc
Confidence 112211 112222223333211222 4555656666666667789999998888877665 445
Q ss_pred Cc
Q 010868 167 GY 168 (498)
Q Consensus 167 G~ 168 (498)
|-
T Consensus 220 G~ 221 (290)
T 3i0w_A 220 GP 221 (290)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 161
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=31.23 E-value=25 Score=29.57 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHH
Q 010868 171 RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNY 205 (498)
Q Consensus 171 RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~ 205 (498)
.-..|.++|+. .|.+.++|..|+|||+.
T Consensus 48 ~D~tL~emA~~-------~P~t~~eL~~I~Gvg~~ 75 (113)
T 2dgz_A 48 TNKILVDMAKM-------RPTTVENVKRIDGVSEG 75 (113)
T ss_dssp CHHHHHHHHHH-------CCCSHHHHHHSSSCCTT
T ss_pred CHHHHHHHHHh-------CCCCHHHHHhCCCCCHH
Confidence 34566677664 69999999999999974
No 162
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=31.01 E-value=74 Score=31.47 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=34.3
Q ss_pred hccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 010868 164 AGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 164 ~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il 211 (498)
...|+.+=|.++.++++.|..+ -.+ ....|++|||||+.++..+-
T Consensus 134 ~~~g~~~~~~~~l~L~q~i~q~--~w~-~~~pL~Qlp~i~~~~~~~l~ 178 (339)
T 2q0z_X 134 SSNGWLSPALAAMELAQMVTQA--MWS-KDSYLKQLPHFTSEHIKRCT 178 (339)
T ss_dssp HHTTBHHHHHHHHHHHHHHHHT--CCT-TSCGGGGSTTCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHh--cCC-CCCceecCCCCCHHHHHHHH
Confidence 3567777789999999999885 222 33479999999998877654
No 163
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=29.34 E-value=47 Score=25.48 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=31.4
Q ss_pred hCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHc
Q 010868 144 KWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAE 185 (498)
Q Consensus 144 ~fPt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~ 185 (498)
-|-|.++++.++.++|..+ -|+.. ++.-|++.|+.++..
T Consensus 26 Gf~tve~vA~~~~~eL~~I---~G~dE~~a~~l~~~A~~~l~~ 65 (70)
T 1u9l_A 26 GFSTLEELAYVPMKELLEI---EGLDEPTVEALRERAKNALAT 65 (70)
T ss_dssp TCCCHHHHHHSCHHHHTTS---TTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCcHHHHHcCCHHHHhhc---cCCCHHHHHHHHHHHHHHHHH
Confidence 4889999999999997443 68877 899999998877653
No 164
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.15 E-value=27 Score=30.94 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=19.6
Q ss_pred hhhhhcCCCCcHHHHHHHHHHhc
Q 010868 193 VSDLRKVPGIGNYTAGAIASIAF 215 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~a~ 215 (498)
.-.|..+.|||+.+|..|+.-+-
T Consensus 22 ~~aLt~I~GIG~~~A~~I~~~~g 44 (148)
T 3j20_O 22 RWALTAIKGIGINFATMVCRVAG 44 (148)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHT
T ss_pred hhhhhhccCcCHHHHHHHHHHhC
Confidence 45799999999999999997653
No 165
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=28.14 E-value=30 Score=30.82 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=22.0
Q ss_pred CCCCc---hhhhhcCCCCcHHHHHHHHHHhc
Q 010868 188 GFPNT---VSDLRKVPGIGNYTAGAIASIAF 215 (498)
Q Consensus 188 ~~p~~---~~~L~~LpGIG~~TA~~il~~a~ 215 (498)
++|.. .-.|..+.|||+.+|..|+.-+-
T Consensus 19 ~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~g 49 (152)
T 3iz6_M 19 NVDGKQKIMFALTSIKGVGRRFSNIVCKKAD 49 (152)
T ss_dssp CCCCSSBHHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred cCCCCcEeHhhhhhccCcCHHHHHHHHHHcC
Confidence 45543 45799999999999999997653
No 166
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=27.87 E-value=29 Score=30.98 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.1
Q ss_pred hhhhhcCCCCcHHHHHHHHHHh
Q 010868 193 VSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 193 ~~~L~~LpGIG~~TA~~il~~a 214 (498)
.-.|..+.|||+.+|..|+.-+
T Consensus 29 ~~aLt~I~GIG~~~A~~I~~~~ 50 (155)
T 2xzm_M 29 PIALTGIRGIGRRFAYIICKVL 50 (155)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHT
T ss_pred EEeeecccccCHHHHHHHHHHc
Confidence 4579999999999999998765
No 167
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=26.75 E-value=59 Score=34.80 Aligned_cols=58 Identities=24% Similarity=0.273 Sum_probs=38.1
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchh----hhhcCCCCcHHHHHHHHHHh
Q 010868 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVS----DLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~----~L~~LpGIG~~TA~~il~~a 214 (498)
+++.+++.-.|=.. |++.-.++|..|.....++....+ .|.+|||||..++..|-.+.
T Consensus 11 ~~~a~~~e~~g~~~~r~~aYr~Aa~~l~~~~~~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v 73 (575)
T 3b0x_A 11 EEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAEKILEFL 73 (575)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHCCSCHHHHHTTCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhCCcchhhHhhcchhHHHhCCCCCHHHHHHHHHHH
Confidence 34445555556433 888889999988774322221111 18999999999999886553
No 168
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=25.54 E-value=15 Score=35.28 Aligned_cols=48 Identities=31% Similarity=0.270 Sum_probs=0.0
Q ss_pred HhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHH
Q 010868 163 WAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 163 i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il~~ 213 (498)
|.|+|= .+|+.|++. -+..-..-.-.+.++|.++||||++||.-|+..
T Consensus 20 IpGIGp-k~a~~Ll~~--gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 20 ISGVGP-SKAESLREA--GFESVEDVRGADQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp ---------------------------------------------------
T ss_pred CCCCCH-HHHHHHHHc--CCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHH
Confidence 344443 267776654 111101111246788999999999999988654
No 169
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=24.89 E-value=39 Score=26.18 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=30.5
Q ss_pred hccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 010868 164 AGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 164 ~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~LpGIG~~TA~~il 211 (498)
..++++.||.+..+-|..-.= +.-+--+.++|++++|+|+++.+-|.
T Consensus 12 e~L~LS~Ra~NcLkragI~Tv-~dL~~~s~~dLlki~n~G~kSl~EI~ 58 (73)
T 1z3e_B 12 EELDLSVRSYNCLKRAGINTV-QELANKTEEDMMKVRNLGRKSLEEVK 58 (73)
T ss_dssp GGSCCBHHHHHHHHHTTCCBH-HHHHTSCHHHHHTSTTCCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHcCCCcH-HHHHcCCHHHHHHcCCCCHHHHHHHH
Confidence 457888788877554321000 00122467899999999999988775
No 170
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=21.93 E-value=19 Score=34.20 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=0.0
Q ss_pred chhhhhcCCCCcHHHHHHHH
Q 010868 192 TVSDLRKVPGIGNYTAGAIA 211 (498)
Q Consensus 192 ~~~~L~~LpGIG~~TA~~il 211 (498)
+.++|.++ |||+++|..|.
T Consensus 203 s~eeL~~V-GIG~~~A~~I~ 221 (226)
T 3c65_A 203 TVEELQRA-NIPRAVAEKIY 221 (226)
T ss_dssp --------------------
T ss_pred CHHHHHHc-CCCHHHHHHHH
Confidence 34555555 55555555554
No 171
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=20.25 E-value=45 Score=32.76 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=14.0
Q ss_pred hhcCCCCcHHHHHHHHH
Q 010868 196 LRKVPGIGNYTAGAIAS 212 (498)
Q Consensus 196 L~~LpGIG~~TA~~il~ 212 (498)
+-.+||||++||.-++.
T Consensus 205 iPGVpGIG~KTA~kLL~ 221 (290)
T 1exn_A 205 IRGVEGIGAKRGYNIIR 221 (290)
T ss_dssp BCCCTTCCHHHHHHHHH
T ss_pred CCCCCcCCHhHHHHHHH
Confidence 34689999999988775
No 172
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=20.10 E-value=33 Score=29.57 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=21.3
Q ss_pred CCCCc---hhhhhcCCCCcHHHHHHHHHHh
Q 010868 188 GFPNT---VSDLRKVPGIGNYTAGAIASIA 214 (498)
Q Consensus 188 ~~p~~---~~~L~~LpGIG~~TA~~il~~a 214 (498)
++|.. .-.|..+.|||+.+|..|+.-+
T Consensus 8 ~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~ 37 (126)
T 2vqe_M 8 EIPRNKRVDVALTYIYGIGKARAKEALEKT 37 (126)
T ss_dssp CCCCSSBHHHHHTTSSSCCSHHHHHHTTTT
T ss_pred cCCCCcEeeeehhccccccHHHHHHHHHHc
Confidence 45643 3579999999999999998653
No 173
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=20.02 E-value=48 Score=31.27 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=0.0
Q ss_pred hhcCCCCcHHHHHHHHHH
Q 010868 196 LRKVPGIGNYTAGAIASI 213 (498)
Q Consensus 196 L~~LpGIG~~TA~~il~~ 213 (498)
|..+||||+++|..++..
T Consensus 170 LdgIpGIG~k~ak~Ll~~ 187 (220)
T 2nrt_A 170 LDNVPGIGPIRKKKLIEH 187 (220)
T ss_dssp HTTSTTCCHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHH
Done!