Query 010869
Match_columns 498
No_of_seqs 267 out of 1334
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:29:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00122 rimM 16S rRNA-process 100.0 4.2E-44 9.1E-49 337.1 20.2 170 73-269 3-172 (172)
2 COG0806 RimM RimM protein, req 100.0 1E-43 2.2E-48 334.2 18.8 171 74-269 4-174 (174)
3 PRK14591 rimM 16S rRNA-process 100.0 3.2E-43 7E-48 330.5 19.8 167 75-267 3-169 (169)
4 PRK14590 rimM 16S rRNA-process 100.0 2.8E-43 6E-48 331.5 18.6 169 78-270 1-171 (171)
5 PRK14592 rimM 16S rRNA-process 100.0 1.2E-42 2.7E-47 325.3 18.6 163 76-267 1-163 (165)
6 PRK14593 rimM 16S rRNA-process 100.0 3.5E-42 7.5E-47 327.6 18.3 177 75-270 2-183 (184)
7 TIGR02273 16S_RimM 16S rRNA pr 100.0 8.9E-42 1.9E-46 319.2 19.8 165 77-266 1-165 (165)
8 PRK14594 rimM 16S rRNA-process 100.0 6.9E-41 1.5E-45 313.9 19.2 161 77-265 1-163 (166)
9 PLN02435 probable UDP-N-acetyl 100.0 1.7E-40 3.7E-45 354.5 17.1 186 295-498 20-217 (493)
10 PRK13829 rimM 16S rRNA-process 100.0 1.4E-39 3E-44 304.0 18.4 161 76-269 2-162 (162)
11 PRK13828 rimM 16S rRNA-process 100.0 1.5E-39 3.2E-44 303.4 17.3 156 89-272 1-156 (161)
12 PLN02830 UDP-sugar pyrophospho 100.0 1.9E-36 4.1E-41 331.2 18.2 185 295-497 25-225 (615)
13 KOG2388 UDP-N-acetylglucosamin 100.0 1.4E-36 3E-41 318.1 12.7 183 298-498 4-194 (477)
14 PTZ00339 UDP-N-acetylglucosami 100.0 5.9E-35 1.3E-39 312.4 15.0 191 302-498 3-205 (482)
15 cd06424 UGGPase UGGPase cataly 99.9 1.4E-25 3E-30 229.0 10.2 91 407-497 1-94 (315)
16 COG4284 UDP-glucose pyrophosph 99.9 2.5E-24 5.4E-29 226.6 10.6 175 297-497 15-192 (472)
17 cd04193 UDPGlcNAc_PPase UDPGlc 99.9 3.3E-23 7.1E-28 213.1 11.6 105 393-497 2-111 (323)
18 cd00897 UGPase_euk Eukaryotic 99.8 2.8E-20 6.1E-25 189.3 10.0 85 405-497 2-88 (300)
19 PF01782 RimM: RimM N-terminal 99.8 1.8E-19 3.9E-24 150.3 10.5 84 79-168 1-84 (84)
20 PF01704 UDPGP: UTP--glucose-1 99.8 9.2E-20 2E-24 193.3 9.0 95 394-497 45-141 (420)
21 PLN02474 UTP--glucose-1-phosph 99.8 2.6E-19 5.6E-24 191.2 10.4 89 400-497 75-164 (469)
22 cd04180 UGPase_euk_like Eukary 99.7 2.5E-16 5.4E-21 158.3 9.8 86 407-497 1-89 (266)
23 PF05239 PRC: PRC-barrel domai 98.8 2.6E-08 5.7E-13 81.4 9.0 78 174-268 1-79 (79)
24 cd00226 PRCH Photosynthetic re 97.2 0.00096 2.1E-08 66.5 7.0 67 180-270 146-216 (246)
25 KOG2638 UDP-glucose pyrophosph 97.0 0.0022 4.8E-08 68.0 8.5 93 396-497 95-188 (498)
26 COG1873 Protein implicated in 93.9 0.17 3.7E-06 43.1 6.3 58 176-245 5-65 (87)
27 KOG2388 UDP-N-acetylglucosamin 93.9 0.00052 1.1E-08 73.8 -11.2 183 133-335 64-246 (477)
28 PF01128 IspD: 2-C-methyl-D-er 91.1 0.53 1.2E-05 46.6 6.5 64 407-479 1-65 (221)
29 COG1213 Predicted sugar nucleo 89.2 1.4 3.1E-05 44.1 7.7 66 407-482 4-70 (239)
30 PRK13385 2-C-methyl-D-erythrit 88.7 0.88 1.9E-05 44.4 5.9 65 406-479 2-67 (230)
31 TIGR02092 glgD glucose-1-phosp 88.7 0.44 9.6E-06 49.8 4.0 74 405-488 1-79 (369)
32 TIGR01150 puhA photosynthetic 88.2 1.5 3.2E-05 44.0 7.0 58 181-263 150-211 (252)
33 COG2266 GTP:adenosylcobinamide 87.9 1.2 2.6E-05 42.7 5.9 60 407-480 1-62 (177)
34 TIGR00454 conserved hypothetic 87.8 0.83 1.8E-05 43.6 4.9 61 408-479 2-62 (183)
35 PRK00560 molybdopterin-guanine 87.7 0.57 1.2E-05 44.9 3.7 42 402-445 4-46 (196)
36 PLN02728 2-C-methyl-D-erythrit 87.4 0.95 2.1E-05 45.6 5.3 66 404-478 22-88 (252)
37 TIGR02888 spore_YlmC_YmxH spor 87.0 1.1 2.5E-05 37.2 4.6 58 178-246 1-63 (76)
38 PF13106 DUF3961: Domain of un 86.2 0.36 7.8E-06 35.2 1.1 15 480-494 4-21 (40)
39 cd02509 GDP-M1P_Guanylyltransf 85.6 1.5 3.2E-05 44.4 5.6 62 408-479 2-70 (274)
40 PRK15480 glucose-1-phosphate t 85.4 3.1 6.8E-05 42.7 7.9 78 406-496 3-84 (292)
41 COG0836 {ManC} Mannose-1-phosp 84.2 1.6 3.4E-05 45.7 5.1 64 407-479 2-71 (333)
42 cd04189 G1P_TT_long G1P_TT_lon 84.1 4.4 9.5E-05 39.1 8.0 68 408-486 2-73 (236)
43 COG2451 Ribosomal protein L35A 83.8 2.1 4.6E-05 37.0 4.8 27 139-165 26-52 (100)
44 COG1093 SUI2 Translation initi 82.4 3.5 7.5E-05 41.9 6.5 90 195-305 15-115 (269)
45 PRK04337 50S ribosomal protein 81.6 1.7 3.7E-05 37.1 3.4 28 138-165 19-46 (87)
46 cd06422 NTP_transferase_like_1 80.4 6.9 0.00015 37.5 7.7 71 409-495 2-77 (221)
47 PRK05293 glgC glucose-1-phosph 79.8 4.1 8.8E-05 42.7 6.4 73 405-488 2-79 (380)
48 PTZ00041 60S ribosomal protein 79.8 4.8 0.0001 36.4 5.8 27 138-164 38-64 (120)
49 PRK14500 putative bifunctional 78.9 2.4 5.2E-05 44.8 4.3 40 404-445 158-197 (346)
50 TIGR01207 rmlA glucose-1-phosp 78.4 6.9 0.00015 40.0 7.4 75 409-496 2-80 (286)
51 cd04182 GT_2_like_f GT_2_like_ 77.8 2.7 5.8E-05 38.5 3.9 38 407-446 1-38 (186)
52 cd04197 eIF-2B_epsilon_N The N 77.1 9.8 0.00021 36.6 7.7 76 409-495 3-84 (217)
53 PRK00317 mobA molybdopterin-gu 74.9 3.5 7.6E-05 38.8 3.9 39 405-445 2-41 (193)
54 PF01247 Ribosomal_L35Ae: Ribo 74.6 3.1 6.7E-05 36.1 3.0 60 138-215 19-79 (95)
55 cd02508 ADP_Glucose_PP ADP-glu 74.4 9.3 0.0002 36.2 6.6 67 409-486 1-72 (200)
56 TIGR03202 pucB xanthine dehydr 73.4 4.1 8.9E-05 38.3 3.9 35 408-444 2-36 (190)
57 PRK13149 H/ACA RNA-protein com 72.7 14 0.00031 30.3 6.5 33 183-216 26-58 (73)
58 PRK14490 putative bifunctional 72.7 3.4 7.4E-05 43.7 3.5 45 399-445 167-211 (369)
59 TIGR01208 rmlA_long glucose-1- 72.6 16 0.00034 38.0 8.4 67 409-485 2-72 (353)
60 PRK02726 molybdopterin-guanine 72.4 3.8 8.2E-05 39.3 3.5 38 406-445 7-44 (200)
61 TIGR02665 molyb_mobA molybdopt 71.4 4.4 9.5E-05 37.7 3.6 38 407-445 1-38 (186)
62 TIGR01105 galF UTP-glucose-1-p 71.2 15 0.00032 37.9 7.7 63 406-479 3-69 (297)
63 cd02538 G1P_TT_short G1P_TT_sh 71.0 15 0.00032 35.7 7.4 69 408-486 2-74 (240)
64 PF00483 NTP_transferase: Nucl 71.0 7.3 0.00016 37.7 5.2 74 410-496 3-81 (248)
65 PRK15460 cpsB mannose-1-phosph 70.1 15 0.00033 40.5 7.9 67 406-482 5-77 (478)
66 cd02503 MobA MobA catalyzes th 69.8 4.3 9.4E-05 37.5 3.2 37 408-446 2-38 (181)
67 KOG0887 60S ribosomal protein 69.0 6 0.00013 34.9 3.6 51 139-205 30-81 (111)
68 PRK14352 glmU bifunctional N-a 68.5 14 0.00031 40.2 7.3 63 406-479 4-67 (482)
69 cd02540 GT2_GlmU_N_bac N-termi 68.3 15 0.00033 35.0 6.7 60 409-479 1-61 (229)
70 TIGR01479 GMP_PMI mannose-1-ph 68.2 14 0.00031 40.4 7.2 61 409-479 3-69 (468)
71 cd06915 NTP_transferase_WcbM_l 68.1 12 0.00026 35.3 5.9 64 409-484 1-69 (223)
72 COG3277 GAR1 RNA-binding prote 68.0 16 0.00035 31.9 6.0 32 183-215 27-58 (98)
73 PF09939 DUF2171: Uncharacteri 67.8 27 0.00058 28.5 6.8 57 183-263 4-60 (67)
74 TIGR03310 matur_ygfJ molybdenu 67.8 5.8 0.00013 36.7 3.6 35 409-445 2-36 (188)
75 TIGR00453 ispD 2-C-methyl-D-er 66.7 6.4 0.00014 37.6 3.7 38 408-446 1-39 (217)
76 PRK00155 ispD 2-C-methyl-D-ery 66.1 6.7 0.00015 37.9 3.8 39 406-445 3-42 (227)
77 PRK14356 glmU bifunctional N-a 65.7 7.9 0.00017 41.6 4.5 39 406-445 5-44 (456)
78 cd02516 CDP-ME_synthetase CDP- 65.6 5.9 0.00013 37.7 3.3 38 407-445 1-39 (218)
79 COG1588 POP4 RNase P/RNase MRP 65.0 31 0.00067 30.0 7.0 80 175-282 8-92 (95)
80 PRK09382 ispDF bifunctional 2- 64.3 8 0.00017 41.4 4.2 39 406-445 5-44 (378)
81 PRK04337 50S ribosomal protein 62.4 9 0.0002 32.8 3.3 27 77-103 51-77 (87)
82 cd06426 NTP_transferase_like_2 62.1 29 0.00064 32.9 7.3 65 409-484 1-69 (220)
83 PF12804 NTP_transf_3: MobA-li 61.9 7 0.00015 35.3 2.8 36 409-446 1-36 (160)
84 PRK14360 glmU bifunctional N-a 61.8 17 0.00037 38.9 6.2 38 407-445 2-40 (450)
85 cd04181 NTP_transferase NTP_tr 61.6 28 0.00061 32.6 7.1 73 409-495 1-77 (217)
86 PRK10122 GalU regulator GalF; 61.4 36 0.00077 35.0 8.2 62 406-478 3-68 (297)
87 COG3881 PRC-barrel domain cont 60.9 6 0.00013 37.4 2.2 68 179-265 4-72 (176)
88 PTZ00041 60S ribosomal protein 58.9 11 0.00024 34.1 3.4 31 77-107 78-108 (120)
89 PRK00844 glgC glucose-1-phosph 58.1 30 0.00065 36.9 7.3 65 404-479 3-72 (407)
90 PRK14489 putative bifunctional 57.7 12 0.00025 39.7 4.0 38 406-445 5-43 (366)
91 COG0746 MobA Molybdopterin-gua 56.2 11 0.00025 36.4 3.3 38 406-446 4-41 (192)
92 TIGR01173 glmU UDP-N-acetylglu 56.0 22 0.00049 37.8 5.9 61 408-479 2-63 (451)
93 cd04198 eIF-2B_gamma_N The N-t 55.8 48 0.001 31.8 7.7 62 409-480 3-68 (214)
94 cd02513 CMP-NeuAc_Synthase CMP 55.5 18 0.0004 34.3 4.7 38 406-446 1-38 (223)
95 COG1208 GCD1 Nucleoside-diphos 55.4 44 0.00095 35.3 7.8 68 407-485 2-73 (358)
96 COG1211 IspD 4-diphosphocytidy 54.3 17 0.00038 36.4 4.3 65 405-478 3-68 (230)
97 PRK14353 glmU bifunctional N-a 53.9 16 0.00034 39.1 4.3 40 405-445 4-44 (446)
98 TIGR02623 G1P_cyt_trans glucos 51.8 36 0.00078 33.8 6.2 62 409-481 2-67 (254)
99 PRK14358 glmU bifunctional N-a 51.7 30 0.00065 37.9 6.1 62 406-478 7-69 (481)
100 PF01247 Ribosomal_L35Ae: Ribo 50.9 15 0.00032 32.0 2.8 29 75-103 57-85 (95)
101 cd02517 CMP-KDO-Synthetase CMP 45.6 35 0.00076 33.0 4.9 37 406-445 1-37 (239)
102 COG1209 RfbA dTDP-glucose pyro 44.8 30 0.00064 35.7 4.3 75 409-496 3-81 (286)
103 PRK05450 3-deoxy-manno-octulos 44.3 34 0.00073 33.2 4.6 38 406-446 2-39 (245)
104 COG3881 PRC-barrel domain cont 43.5 50 0.0011 31.4 5.2 80 127-214 39-121 (176)
105 PRK13389 UTP--glucose-1-phosph 43.5 69 0.0015 33.0 6.9 67 402-479 4-74 (302)
106 PRK02862 glgC glucose-1-phosph 43.0 42 0.00091 36.2 5.5 64 406-480 3-71 (429)
107 cd06425 M1P_guanylylT_B_like_N 42.8 65 0.0014 31.1 6.3 60 409-479 3-66 (233)
108 cd02524 G1P_cytidylyltransfera 40.7 55 0.0012 32.2 5.5 65 409-484 1-69 (253)
109 COG2938 Uncharacterized conser 40.1 86 0.0019 27.3 5.8 58 279-344 12-69 (94)
110 PRK09451 glmU bifunctional N-a 40.0 35 0.00075 36.8 4.3 39 406-445 5-44 (456)
111 PRK14359 glmU bifunctional N-a 39.7 31 0.00067 36.6 3.8 61 407-479 3-64 (430)
112 cd02523 PC_cytidylyltransferas 38.8 93 0.002 29.8 6.7 60 409-479 1-64 (229)
113 COG2451 Ribosomal protein L35A 38.6 37 0.0008 29.6 3.3 28 76-103 57-84 (100)
114 PF10153 DUF2361: Uncharacteri 37.5 46 0.00099 29.9 3.9 36 288-334 59-94 (114)
115 TIGR00752 slp outer membrane l 36.5 91 0.002 30.2 6.1 68 182-262 46-113 (182)
116 cd04183 GT2_BcE_like GT2_BcbE_ 35.5 35 0.00075 32.8 3.1 35 409-444 1-39 (231)
117 PRK10834 vancomycin high tempe 35.3 64 0.0014 32.6 5.0 77 395-481 70-161 (239)
118 PF11460 DUF3007: Protein of u 35.3 34 0.00074 30.3 2.7 25 308-332 79-103 (104)
119 PRK10494 hypothetical protein; 35.1 64 0.0014 32.7 5.1 76 396-480 110-200 (259)
120 cd02518 GT2_SpsF SpsF is a gly 35.0 84 0.0018 30.3 5.8 34 409-445 2-35 (233)
121 PRK14355 glmU bifunctional N-a 34.9 98 0.0021 33.4 6.8 38 406-444 3-41 (459)
122 PF15392 Joubert: Joubert synd 34.6 58 0.0013 34.1 4.6 40 273-312 47-87 (329)
123 cd02541 UGPase_prokaryotic Pro 34.2 82 0.0018 31.1 5.6 60 409-479 3-66 (267)
124 PRK13368 3-deoxy-manno-octulos 31.3 77 0.0017 30.5 4.8 37 406-445 2-38 (238)
125 COG4750 LicC CTP:phosphocholin 30.2 38 0.00083 33.4 2.4 38 409-452 3-43 (231)
126 KOG2193 IGF-II mRNA-binding pr 29.9 36 0.00078 37.1 2.3 79 93-171 456-535 (584)
127 PF06258 Mito_fiss_Elm1: Mitoc 29.6 2.2E+02 0.0047 29.7 8.0 46 445-496 172-217 (311)
128 PRK00725 glgC glucose-1-phosph 28.3 1.1E+02 0.0024 32.9 5.8 64 405-479 14-82 (425)
129 PF11414 Suppressor_APC: Adeno 27.0 49 0.0011 28.1 2.2 52 280-336 25-77 (84)
130 PF04410 Gar1: Gar1/Naf1 RNA b 26.2 1.1E+02 0.0024 28.5 4.7 31 184-215 51-81 (154)
131 cd06428 M1P_guanylylT_A_like_N 26.2 2.1E+02 0.0046 28.0 7.0 60 410-479 2-67 (257)
132 TIGR01099 galU UTP-glucose-1-p 25.8 84 0.0018 30.8 4.0 61 408-479 2-66 (260)
133 PRK14354 glmU bifunctional N-a 25.0 85 0.0018 33.6 4.2 38 407-445 3-41 (458)
134 PF11717 Tudor-knot: RNA bindi 25.0 2.3E+02 0.0049 21.6 5.5 32 121-152 13-44 (55)
135 cd06259 YdcF-like YdcF-like. Y 24.7 2.3E+02 0.0051 25.2 6.4 81 395-481 23-118 (150)
136 PF03843 Slp: Outer membrane l 24.4 1.8E+02 0.0039 27.4 5.8 68 182-262 32-100 (160)
137 COG5592 Uncharacterized conser 24.1 1E+02 0.0022 29.5 3.9 59 285-343 91-156 (171)
138 COG3065 Slp Starvation-inducib 24.0 2E+02 0.0043 28.1 5.9 61 195-262 58-118 (191)
139 PF02996 Prefoldin: Prefoldin 23.6 1.5E+02 0.0033 25.6 4.9 59 235-306 36-95 (120)
140 COG4014 Uncharacterized protei 23.3 1.1E+02 0.0025 26.3 3.7 35 179-214 7-41 (97)
141 PF13945 NST1: Salt tolerance 23.3 40 0.00087 32.9 1.1 29 312-344 107-135 (190)
142 PF14969 DUF4508: Domain of un 22.0 96 0.0021 27.2 3.1 36 309-344 59-95 (98)
143 PF13864 Enkurin: Calmodulin-b 21.4 3.4E+02 0.0073 23.2 6.4 32 313-345 31-62 (98)
144 COG1730 GIM5 Predicted prefold 21.3 2.7E+02 0.0058 26.1 6.1 31 237-267 55-86 (145)
145 TIGR02091 glgC glucose-1-phosp 20.2 50 0.0011 34.2 1.2 60 409-479 1-65 (361)
No 1
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=4.2e-44 Score=337.07 Aligned_cols=170 Identities=40% Similarity=0.655 Sum_probs=154.0
Q ss_pred CCCCeEEEEEEeeeeeeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHH
Q 010869 73 SGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVE 152 (498)
Q Consensus 73 ~~~e~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re 152 (498)
.+++++.||+|+++||+||||||+++||+|+ +|...+.+|+ . .+ ...+++++++.|.++ +.++++|+||+|||
T Consensus 3 ~~~~~v~iG~i~~~hGlkGevkv~~~td~p~-~~~~~~~~~~-~--~~-~~~~~~~v~~~~~~~--~~~lvkf~gi~~~~ 75 (172)
T PRK00122 3 KPEDLLVVGKIVSAHGIKGEVKVKSFTDFPE-RIFDYGPWLL-G--KG-GEWQEVEIESGRFHK--GFLIVKFEGVDDRN 75 (172)
T ss_pred CccceEEEEEEECCCcccEEEEEEEecCCHH-HHcCcCcEEE-c--cC-CceEEEEEEEEEEEC--CEEEEEECCCCCHH
Confidence 4578999999999999999999999999999 6666777777 3 22 235678999999884 56999999999999
Q ss_pred HHhcccCCeEEEeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCc
Q 010869 153 QARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSA 232 (498)
Q Consensus 153 ~Ae~L~G~~l~v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~ 232 (498)
+|++|+|+.||++++++|+|++|||||+|||||+|+| ++|..+|+|++|+++||||+|+|+.
T Consensus 76 ~Ae~l~g~~l~i~~~~lp~l~~~e~y~~dLiG~~V~d-~~g~~lG~V~~v~~~~a~dll~I~~----------------- 137 (172)
T PRK00122 76 AAEALKGCELFVPRSQLPELEEDEYYWHDLIGLEVVD-EDGEELGKVTDILETGANDVLVVLK----------------- 137 (172)
T ss_pred HHHHhCCCEEEEEHHHCCCCCCCCEEHHHhCCcEEEe-CCCcEEEEEEEEccCCCceEEEEEC-----------------
Confidence 9999999999999999999999999999999999997 6788899999999999999999974
Q ss_pred CCCCCcEEEEecccCccceeeCCCCEEEEeCCCCccc
Q 010869 233 SDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 269 (498)
Q Consensus 233 ~~~~gkevLIPfv~e~V~~VDle~~~I~V~~peGLLe 269 (498)
.+++++||||+++||++||+++++|+|+||+||||
T Consensus 138 --~~~~e~liP~~~~~V~~iD~~~~~I~v~~p~gLld 172 (172)
T PRK00122 138 --DKKEERLIPFVEEVVKEVDLEAKRITVDWPEGLLD 172 (172)
T ss_pred --CCCCEEEEecChhhCCEEECCCCEEEEeCCCcccC
Confidence 36789999999999999999999999999999986
No 2
>COG0806 RimM RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-43 Score=334.18 Aligned_cols=171 Identities=37% Similarity=0.655 Sum_probs=154.0
Q ss_pred CCCeEEEEEEeeeeeeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHHH
Q 010869 74 GLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQ 153 (498)
Q Consensus 74 ~~e~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re~ 153 (498)
.++++.||+|+++|||+|||||+++||+|+ .+..++.+++.. ++ .....+++.++|.| ++.+|++|+||+||++
T Consensus 4 ~~~~~~vGkI~~t~Gi~GevrV~s~Td~~~-~~~~~~~~~~~~--~~-~~~~~~~v~~~r~~--~~~~i~kf~gi~dr~~ 77 (174)
T COG0806 4 PENLLLVGKIVSTHGIRGEVRVKSFTDFPE-SLFDYGPWLLLK--PG-GEWQELTVESVRKH--KNLLILKFKGIDDRNA 77 (174)
T ss_pred ccceEEEEEEEecccccEEEEEEECCCCHH-HhcCcCcEEEec--CC-CceEEEEEEEeeec--CCEEEEEeCCCCCHHH
Confidence 458999999999999999999999999999 455567777665 23 23367899999888 5789999999999999
Q ss_pred HhcccCCeEEEeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcC
Q 010869 154 ARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSAS 233 (498)
Q Consensus 154 Ae~L~G~~l~v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~ 233 (498)
|++|+|++|+++++++|+++||||||+|||||+|++ ++|+.||+|++|+++||||+|+|+..
T Consensus 78 ae~l~G~~i~v~~~~~p~l~EdEfY~~DLiG~~V~~-~~g~~lG~V~~i~~~Ga~Dvl~V~~~----------------- 139 (174)
T COG0806 78 AEALKGYEIFVDRSELPELEEDEFYYHDLIGLEVVT-EDGELLGKVTEILETGANDVLVVKAK----------------- 139 (174)
T ss_pred HHHhcCcEEEEEHHHCCCCCCCcEEeEeecCcEEEc-CCCcEEEEEEEEeeCCCccEEEEEec-----------------
Confidence 999999999999999999999999999999999997 56999999999999999999999961
Q ss_pred CCCCcEEEEecccCccceeeCCCCEEEEeCCCCccc
Q 010869 234 DASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 269 (498)
Q Consensus 234 ~~~gkevLIPfv~e~V~~VDle~~~I~V~~peGLLe 269 (498)
.+++++||||++++|++||+++++|.|+|++||+|
T Consensus 140 -~~~k~~LIPf~~~~V~~Vd~~~k~I~v~~~~~ll~ 174 (174)
T COG0806 140 -GGKKERLIPFVDAVVKEVDLEAKKIEVDPDEGLLD 174 (174)
T ss_pred -CCCcEEEecchHheeeEEecCCCEEEEeccchhcC
Confidence 35689999999999999999999999999999986
No 3
>PRK14591 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=3.2e-43 Score=330.46 Aligned_cols=167 Identities=20% Similarity=0.341 Sum_probs=151.3
Q ss_pred CCeEEEEEEeeeeeeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHHHH
Q 010869 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQA 154 (498)
Q Consensus 75 ~e~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re~A 154 (498)
.+++.||+|++||||||||||+|+||+|+ +|..++.+|+.. .+....+++++.+.|.|+ +.++++|+||+|||+|
T Consensus 3 ~~~v~vG~I~~~hGlkGevkv~~~td~p~-~~~~~~~~~l~~--~~~~~~~~~~v~~~~~~~--~~~lv~f~gi~dr~~A 77 (169)
T PRK14591 3 QDFVEIAKIGATYKLNGELNLYPLANSIE-TLLSYGDWYIQL--PATNVWQQLKGESVLKRA--DKVYIKLANINNADTA 77 (169)
T ss_pred CcEEEEEEEeCCccccEEEEEEECCCCHH-HhcCCCeEEEEe--cCCCceeEEEEEEEEEEC--CEEEEEEcCCCCHHHH
Confidence 35899999999999999999999999999 888888888853 222234568888999883 5799999999999999
Q ss_pred hcccCCeEEEeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcCC
Q 010869 155 RPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASD 234 (498)
Q Consensus 155 e~L~G~~l~v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~ 234 (498)
++|+|+.||++++++|+|++|||||+|||||+|+| ++|+.||+|++|+++||||||+|+.
T Consensus 78 e~l~g~~l~v~~~~lp~l~e~E~Y~~dLiG~~V~d-~~g~~lG~V~~v~~~ga~dll~I~~------------------- 137 (169)
T PRK14591 78 KKYVNALIGVPKRALPQLAEDEVYFKDLIGCSVKN-INNDSFGVVVDIIETGANEVLVCKE------------------- 137 (169)
T ss_pred HHhcCCEEEEEHHHCCCCCCCCEEeeeecCcEEEe-CCCCEEEEEEEEeecCCceEEEEEc-------------------
Confidence 99999999999999999999999999999999998 6788899999999999999999985
Q ss_pred CCCcEEEEecccCccceeeCCCCEEEEeCCCCc
Q 010869 235 ASGRLVWIPFVEEIVPIVDMNGREMQITPPKGL 267 (498)
Q Consensus 235 ~~gkevLIPfv~e~V~~VDle~~~I~V~~peGL 267 (498)
+++++||||+++||++||+++++|+|+|+.++
T Consensus 138 -~~ke~LIP~~~~~V~~iD~e~k~I~v~~~~~~ 169 (169)
T PRK14591 138 -DNSEYLIPYVKQYIVSEDLNSKKIVVDWEYDY 169 (169)
T ss_pred -CCeEEEEeChhheeeeEEcCCCEEEEecCCCC
Confidence 46899999999999999999999999998764
No 4
>PRK14590 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=2.8e-43 Score=331.52 Aligned_cols=169 Identities=26% Similarity=0.449 Sum_probs=152.4
Q ss_pred EEEEEEeeeeeeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHHHHhcc
Q 010869 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPL 157 (498)
Q Consensus 78 v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re~Ae~L 157 (498)
+.||+|++||||||||||+++||+|+ +|..++.+|+... .+....++++++++|.|+ +.++++|+||+|||+|++|
T Consensus 1 ~~vG~I~~~hGlkGevkv~~~td~pe-~~~~~~~~~~~~~-~~~~~~~~~~v~~~r~~~--~~~lv~f~gi~~~e~Ae~L 76 (171)
T PRK14590 1 ISLGQLGKPFGIKGWLRVNVRGETLH-TLKAPATLKLGKE-DPQFPESEIALLEIRPHG--GKFLVRFEGYDTPEEAVKW 76 (171)
T ss_pred CeEEEEeCCEeeCeEEEEEEccCCHH-HhcCCCEEEEecC-CCCCCeeEEEEEEEEEEC--CEEEEEECCCCCHHHHHHh
Confidence 47999999999999999999999999 9988888888531 122345679999999984 4699999999999999999
Q ss_pred cCCeEEEeCCCCCCCC-CCccchhccCCcEEEecCCCeEeE-EEEEeccCCCceEEEEEeecccccccCccccccCcCCC
Q 010869 158 VGSTLLAREGDRPELE-DGEFYTRDLVGMRVVMKETGELVG-TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA 235 (498)
Q Consensus 158 ~G~~l~v~~~dlp~L~-edEfY~~DLIGl~V~d~~~G~~LG-~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~ 235 (498)
+|+.|||+++++|+|+ +|||||+|||||+|+| ++|+.+| +|++|+++||||||+|.. .
T Consensus 77 ~g~~l~i~~~~lp~l~~e~e~y~~dLiG~~V~d-~~g~~lGG~V~~v~~~~a~dllvV~~-------------------~ 136 (171)
T PRK14590 77 RGGSLFLPQELLPKIETKGEFYSEDLIGLQAID-ETGKPLNWKLTDVQDNPAHPILVFIK-------------------G 136 (171)
T ss_pred cCCEEEEEHHHCCCCCCCCCEEhHHccCcEEEe-CCCCEeeeEEEEEecCCCceEEEEEC-------------------C
Confidence 9999999999999985 9999999999999998 6788897 999999999999999975 3
Q ss_pred CCcEEEEecccCccceeeCCCCEEEEeCCCCcccc
Q 010869 236 SGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLEL 270 (498)
Q Consensus 236 ~gkevLIPfv~e~V~~VDle~~~I~V~~peGLLeL 270 (498)
+++++||||+++||++||+++++|+|++|+||.+|
T Consensus 137 ~~ke~LiP~v~~~V~~iD~~~k~I~v~~pegl~~~ 171 (171)
T PRK14590 137 EGEEILIPFLNVFVGDLDLEKQTIVLIQPEQWNEL 171 (171)
T ss_pred CCCEEEEechHHhcceEecCCCEEEEECCchHhcC
Confidence 67899999999999999999999999999999875
No 5
>PRK14592 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=1.2e-42 Score=325.31 Aligned_cols=163 Identities=25% Similarity=0.460 Sum_probs=144.8
Q ss_pred CeEEEEEEeeeeeeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHHHHh
Q 010869 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQAR 155 (498)
Q Consensus 76 e~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re~Ae 155 (498)
|++.||+|+++||+||||||+++||+|+ +|.....+++. . .++++...|.++ ++.+|++|+||||||+|+
T Consensus 1 ~~v~iG~I~~~hGlkGevkv~~~td~p~-~~~~~~~~~~~-----~---~~~~v~~~~~~~-~~~~lv~f~gi~~~~~Ae 70 (165)
T PRK14592 1 DLICLGVITSPHGIKGHVKIKTFTEDPE-NISAYGKLTDG-----S---NTYKISVVSVIG-ANLVIAKISGINSRTEAE 70 (165)
T ss_pred CEEEEEEEECCCccCEEEEEEECCCCHH-HhcCCceEEEC-----C---EEEEEEEEEEec-CCEEEEEEcCCCCHHHHH
Confidence 5899999999999999999999999999 88877665541 1 135666666653 468999999999999999
Q ss_pred cccCCeEEEeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcCCC
Q 010869 156 PLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA 235 (498)
Q Consensus 156 ~L~G~~l~v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~ 235 (498)
+|+|+.||++++++|+|++|||||+|||||+|+| ++|..+|+|++|+++||||||+|+.. .
T Consensus 71 ~l~g~~l~v~~~~lp~l~e~e~y~~dLiG~~V~~-~~g~~lG~V~~v~~~ga~dvlvI~~~------------------~ 131 (165)
T PRK14592 71 LLRNKKLYVERSKLPNLNEDEFYQSDLIGMEVKL-EDNTIYGYIKKIYNFGSCDIIEISLT------------------S 131 (165)
T ss_pred HhcCCEEEEEHHHCCCCCCCCEEHHHcCCcEEEc-CCCCEEEEEEEEccCCCccEEEEEEC------------------C
Confidence 9999999999999999999999999999999997 57888999999999999999999830 2
Q ss_pred CCcEEEEecccCccceeeCCCCEEEEeCCCCc
Q 010869 236 SGRLVWIPFVEEIVPIVDMNGREMQITPPKGL 267 (498)
Q Consensus 236 ~gkevLIPfv~e~V~~VDle~~~I~V~~peGL 267 (498)
+++++||||+++||++||+++++|+|+||+.+
T Consensus 132 ~~ke~LIP~v~~~V~~IDle~k~I~v~~pe~~ 163 (165)
T PRK14592 132 TKKSTMLPFTKEIFPHINVKERYIILVPPEII 163 (165)
T ss_pred CCcEEEEecchhcccEEECCCCEEEEECcccc
Confidence 56899999999999999999999999999864
No 6
>PRK14593 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=3.5e-42 Score=327.55 Aligned_cols=177 Identities=23% Similarity=0.360 Sum_probs=148.7
Q ss_pred CCeEEEEEEeeeeeeeeeEEEEeccCCccccccCCCceEEEEee--cCcceeEEEEEEEeEeecCCceEEEEecCCCCHH
Q 010869 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQV--LGRETIREVKLIDGREHPGQKSWILTFEGIDTVE 152 (498)
Q Consensus 75 ~e~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~~~~~~l~~~~--~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re 152 (498)
-+||.||+|+++||+||||||+++||+|+ +|.....+++.... .....++++++.+.|.++ + +++|+||+|||
T Consensus 2 ~~~i~iG~I~~~hGikGevkv~~~td~pe-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r~~~--~--~v~f~gi~dr~ 76 (184)
T PRK14593 2 VSMLLVGRIGKSVGLNGGLKLHLESDFPE-CLKKGVKVSVAPLNAFSCASSFKDYVIHSYEHAK--N--LLFLETIHTPE 76 (184)
T ss_pred ccEEEEEEEECCEeeeEEEEEEECCCCHH-HhccCCEEEEcccccccccCCceEEEEEEEEeeC--C--EEEEcCCCCHH
Confidence 46899999999999999999999999999 88766665553210 001234578999999874 2 58999999999
Q ss_pred HHhcccCCeEEEeCCCCC---CCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccc
Q 010869 153 QARPLVGSTLLAREGDRP---ELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEAS 229 (498)
Q Consensus 153 ~Ae~L~G~~l~v~~~dlp---~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~ 229 (498)
+|++|+|+.||++++++| +|++|||||+|||||+|++ + |+.||+|++|+++||||||+|+.....
T Consensus 77 ~Ae~l~g~~l~i~~~~l~~lp~l~edEyY~~dLiGl~V~~-~-g~~lG~V~~v~~~ga~dvlvV~~~~~~---------- 144 (184)
T PRK14593 77 KAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVE-E-NEILGKVIEIQRISQTDYFMVETTLSL---------- 144 (184)
T ss_pred HHHHhcCCEEEEEHHHccccCCCCCCcEEeehccCcEEEE-C-CEEeEEEEEEccCCCceEEEEEecccc----------
Confidence 999999999999999976 8999999999999999996 4 889999999999999999999862100
Q ss_pred cCcCCCCCcEEEEecccCccceeeCCCCEEEEeCCCCcccc
Q 010869 230 SSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLEL 270 (498)
Q Consensus 230 ~~~~~~~gkevLIPfv~e~V~~VDle~~~I~V~~peGLLeL 270 (498)
..++.++++||||+++||++||+++++|+|+||+||||-
T Consensus 145 --~~~~~~ke~LIP~~~~~V~~VDle~k~I~v~~~~glle~ 183 (184)
T PRK14593 145 --VEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTLLEN 183 (184)
T ss_pred --ccCCCCcEEEEeChhhhhceEecCCCEEEEeChHHHhhc
Confidence 001234899999999999999999999999999999974
No 7
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=100.00 E-value=8.9e-42 Score=319.19 Aligned_cols=165 Identities=38% Similarity=0.608 Sum_probs=147.1
Q ss_pred eEEEEEEeeeeeeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHHHHhc
Q 010869 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARP 156 (498)
Q Consensus 77 ~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re~Ae~ 156 (498)
|+.||+|+++||+||||||+++||+|+ +|.....+++.. .+ ...+++++++.|.++ +.++++|+||||||+|++
T Consensus 1 ~v~iG~I~~~hGlkGevkv~~~td~p~-~~~~~~~~~~~~--~~-~~~~~~~v~~~~~~~--~~~lv~f~gi~~~~~Ae~ 74 (165)
T TIGR02273 1 LLVVGKIGGPHGIKGEVKVKSFTDFPE-SLFDYGPWLILK--GS-KQWQTVKVARVRKQN--NKLIVKFEGIDDREAAEA 74 (165)
T ss_pred CEEEEEEECCcccCEEEEEEEcCCCHH-HHcCCCcEEEEc--CC-CceEEEEEEEEEEEC--CEEEEEECCCCCHHHHHH
Confidence 589999999999999999999999999 554455566544 22 245678999999883 579999999999999999
Q ss_pred ccCCeEEEeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcCCCC
Q 010869 157 LVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236 (498)
Q Consensus 157 L~G~~l~v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~ 236 (498)
|+|+.||++++++|+|++|||||+|||||+|+| ++|+.+|+|++|+++||||+|+|+.. .+
T Consensus 75 L~g~~l~i~~~~lp~l~e~e~y~~dLiG~~V~d-~~~~~lG~V~~v~~~~a~dll~V~~~------------------~~ 135 (165)
T TIGR02273 75 LKGLELFVPREALPELEEDEYYWTDLIGLEVVT-EEGEELGKVVEILETGANDVLVVRSK------------------KG 135 (165)
T ss_pred hcCCEEEEEHHHCCCCCCCCEEhhHhCCcEEEc-CCCcEEEEEEEEecCCCccEEEEEEC------------------CC
Confidence 999999999999999999999999999999997 57888999999999999999999851 25
Q ss_pred CcEEEEecccCccceeeCCCCEEEEeCCCC
Q 010869 237 GRLVWIPFVEEIVPIVDMNGREMQITPPKG 266 (498)
Q Consensus 237 gkevLIPfv~e~V~~VDle~~~I~V~~peG 266 (498)
++++||||+++||++||+++++|+|+||+|
T Consensus 136 ~ke~liP~~~~fv~~ID~~~~~I~v~~p~G 165 (165)
T TIGR02273 136 KKEVLIPFVEEIVKEIDLEKKIITVDWPEG 165 (165)
T ss_pred CcEEEEECchhhCCEEeCCCCEEEEECCCC
Confidence 689999999999999999999999999997
No 8
>PRK14594 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=6.9e-41 Score=313.85 Aligned_cols=161 Identities=25% Similarity=0.379 Sum_probs=142.5
Q ss_pred eEEEEEEeeeeeeeeeEEEEeccCCccccccC-CC-ceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHHHH
Q 010869 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTT-PG-TRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQA 154 (498)
Q Consensus 77 ~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~-~~-~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re~A 154 (498)
++.||+|++|||+||||||+++||+|+ .|.. .. .+|+.. .+ ...++++++++|.|+ +.++++|+||+|||+|
T Consensus 1 ~~~iG~I~~~hGlkGevkV~~~td~~~-~~~~~~~~~~~~~~--~~-~~~~~~~v~~~r~~~--~~~lvkf~gi~dr~~A 74 (166)
T PRK14594 1 MFVKGIILSSYGINGYAKVKSISNNFC-DFINLKNNKLVLKK--SN-CSSIEVKVEDVSLKN--NSLLLKFEEFNAPEPI 74 (166)
T ss_pred CEEEEEEECceeeeEEEEEEEccCCHH-HhhcccCcEEEEec--CC-CcEEEEEEEEEEEEC--CEEEEEEcCCCCHHHH
Confidence 578999999999999999999999777 5433 22 344432 22 345678999999984 5699999999999999
Q ss_pred hcccCCeEEEeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcCC
Q 010869 155 RPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASD 234 (498)
Q Consensus 155 e~L~G~~l~v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~ 234 (498)
++|+|+.||++++++|+|++|||||+|||||+|++ + |..+|+|++|+++||||+|+|+.
T Consensus 75 e~L~g~~l~v~~~~lp~l~edE~Y~~dLiG~~V~~-~-g~~lG~V~~v~~~ga~dll~V~~------------------- 133 (166)
T PRK14594 75 KPLIGFELWVDDELASKLEEGEYYFGKLIGYAIVN-D-GKELGEVVSFFECLNSVLLEVKV------------------- 133 (166)
T ss_pred HHhcCCEEEEEHHHCCCCCCCcEeHhHccCeEEEE-C-CEEEEEEEEEeeCCCcEEEEEEe-------------------
Confidence 99999999999999999999999999999999997 4 88899999999999999999985
Q ss_pred CCCcEEEEecccCccceeeCCCCEEEEeCCC
Q 010869 235 ASGRLVWIPFVEEIVPIVDMNGREMQITPPK 265 (498)
Q Consensus 235 ~~gkevLIPfv~e~V~~VDle~~~I~V~~pe 265 (498)
+++++||||+++||++||+++++|+|++|+
T Consensus 134 -~~ke~LIPfv~~~V~~VD~~~k~I~v~~~~ 163 (166)
T PRK14594 134 -GIKLFFVPFLSIYLGDINRELKTIELKVLD 163 (166)
T ss_pred -CCEEEEEeChHheeeeEEcCCCEEEEEeHH
Confidence 568999999999999999999999999987
No 9
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=1.7e-40 Score=354.45 Aligned_cols=186 Identities=14% Similarity=0.156 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCHHHHHHHHHHHhcCCHHHHHHHHHhccccccccchhhhhchhhhhhhhhcccCC
Q 010869 295 KRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKIS 374 (498)
Q Consensus 295 ~~~~~lk~~L~~~gQ~Hlf~fw~~L~~~er~~L~~qL~~id~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~piP 374 (498)
.++++++++|.++||+|||+||++|+++||++|++||..||++++++.++.+..+. . .. .+...|+|
T Consensus 20 ~~~~~l~~~l~~~gQ~HLl~~w~~ls~~e~~~L~~qL~~iD~~~l~~~~~~~~~~~-~---------~~---~~~i~P~p 86 (493)
T PLN02435 20 APPQALLERLKDYGQEDAFALWDELSPEERDLLVRDIESLDLPRIDRIIRCSLRSQ-G---------LP---VPAIEPVP 86 (493)
T ss_pred ccHHHHHHHHHHcChHHHHHhhhhCCHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc-C---------Cc---hhccCCCC
Confidence 34567888999999999999999999999999999999999999988887543211 0 01 12245566
Q ss_pred CCCCCCCCC--chhhcccchHHHHHHhhhhccCcEEEEEecCCCCCCCccc-CCC---CcccCCCcchHHHHHHHHHHHH
Q 010869 375 GEGSLGPCA--RAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECD-PHS---VVSESTANKSLALLQTLLSDDQ 448 (498)
Q Consensus 375 ~e~~~~~~~--~~~~~~~~~~~~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~---l~s~~~~kslfql~aerI~~lq 448 (498)
.+ .+.+.. +.+... +|+++|+++|++||||||+||||||||+|++ |+| ++.| ++||+||++++||+++|
T Consensus 87 ~~-~~~~~~~~~~~~~~---~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglp-s~kslfql~~e~I~~lq 161 (493)
T PLN02435 87 EN-SVSTVEERTPEDRE---RWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLP-SGKSLFQLQAERILCVQ 161 (493)
T ss_pred hh-hccchhccChHHHH---HHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCC-CCCcHHHHHHHHHHHHH
Confidence 64 333321 222233 7999999999999999999999999999998 743 2333 37999999999999999
Q ss_pred HHHhh--c----CCccceEEEeCCccchHHHHHhhHhCCCCccCCCcEEEEecCCC
Q 010869 449 RFVKI--E----NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVSNISESFL 498 (498)
Q Consensus 449 ~La~~--~----~~~~IPwyIMTS~~T~~~T~~fF~~n~yFGL~~~qV~fF~Q~~~ 498 (498)
+||+. + ..+.||||||||+.|++.|++||++|+||||+++||+||+|+.+
T Consensus 162 ~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~ 217 (493)
T PLN02435 162 RLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTL 217 (493)
T ss_pred HHHHhhcccccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCc
Confidence 99954 2 35789999999999999999999999999999999999999853
No 10
>PRK13829 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=1.4e-39 Score=303.97 Aligned_cols=161 Identities=25% Similarity=0.387 Sum_probs=139.4
Q ss_pred CeEEEEEEeeeeeeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHHHHh
Q 010869 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQAR 155 (498)
Q Consensus 76 e~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re~Ae 155 (498)
+++.||+|+++|||||||||+ |+|+ |...+.+|+.. .+ .+++++.|.|+ +.++++|+||+|||+|+
T Consensus 2 ~~i~iG~I~~~hGikGevkv~---d~p~--~~~~~~~~~~~--~~-----~~~v~~~r~~~--~~~l~~f~gi~~r~~Ae 67 (162)
T PRK13829 2 RRTEIGRFGGPYGVQGGLKFR---GEPV--VLDLPRVYVEG--LG-----WRAIERAERVG--PELVLHLAGVTSREGAE 67 (162)
T ss_pred CEEEEEEEeCCeeecEEEEEe---cchH--hccCCEEEEcC--CC-----EEEEEEEEEEC--CEEEEEECCCCCHHHHH
Confidence 789999999999999999999 8898 55677788753 22 24788889884 57999999999999999
Q ss_pred cccCCeEEEeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcCCC
Q 010869 156 PLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA 235 (498)
Q Consensus 156 ~L~G~~l~v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~ 235 (498)
+|+|+.||++++++|+|++|||||+|||||+|+ ++|+.||+|++|+++||||+|+|+..... ..
T Consensus 68 ~l~g~~l~v~~~~lp~L~e~EyY~~dLiG~~V~--~~g~~lG~V~~v~~~ga~dvlvV~~~~~~--------------~~ 131 (162)
T PRK13829 68 ALVGLRVYADDADLPPLEEGSYYYHELRGLPVY--VDGEPLGEVVDVEDAGAQDLLVIRHVGGS--------------LR 131 (162)
T ss_pred HhcCCEEEEEHHHCCCCCCCCEEehhccCeEEE--ECCEeeEEEEEEecCCCceEEEEEeCCCC--------------Cc
Confidence 999999999999999999999999999999999 57889999999999999999999862100 00
Q ss_pred CCcEEEEecccCccceeeCCCCEEEEeCCCCccc
Q 010869 236 SGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 269 (498)
Q Consensus 236 ~gkevLIPfv~e~V~~VDle~~~I~V~~peGLLe 269 (498)
+.+++||||+++|| |+++++|+|+||+||||
T Consensus 132 ~~k~~LIP~v~~~V---~~~~~~I~v~~peGlld 162 (162)
T PRK13829 132 ARATYFVPLQAPYV---RVELDGITADAIPGLLD 162 (162)
T ss_pred cCceEEEccccceE---EccCCEEEEeCCccccC
Confidence 12799999999986 58999999999999985
No 11
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=1.5e-39 Score=303.43 Aligned_cols=156 Identities=29% Similarity=0.463 Sum_probs=141.0
Q ss_pred eeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHHHHhcccCCeEEEeCCC
Q 010869 89 LQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGD 168 (498)
Q Consensus 89 lkGevkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re~Ae~L~G~~l~v~~~d 168 (498)
|||||||+++||+|+ +|.....+|+. .+ .+++++.++|.|+ +.+|++|+||+||++|++|+|+.||+++++
T Consensus 1 ikGevkv~~~td~p~-~~~~~~~~~~~---~~---~~~~~v~~~r~~~--~~~lv~f~gi~dr~~Ae~L~g~~l~i~~~~ 71 (161)
T PRK13828 1 VRGEVRLKSFTEDPL-AIADYGPLTTE---DG---ARSFTVALARPAK--DGLVARLKGVATREAAEALRGLELYVPRDR 71 (161)
T ss_pred CcEEEEEEEcCCCHH-HhccCCeEEEC---CC---CEEEEEEEEEEEC--CEEEEEECCCCCHHHHHHhcCCEEEEEHHH
Confidence 699999999999999 88877766643 22 2478999999984 579999999999999999999999999999
Q ss_pred CCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcCCCCCcEEEEecccCc
Q 010869 169 RPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248 (498)
Q Consensus 169 lp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~ 248 (498)
+|+|++|||||+|||||+|+| ++|..||+|++|+++||||||+|+.. .+++++||||+++|
T Consensus 72 lp~l~e~e~y~~dLiG~~V~d-~~g~~lG~V~~V~~~ga~dvlvV~~~------------------~~~ke~LIP~v~~~ 132 (161)
T PRK13828 72 LPELDDDEFYHADLIGLAAVD-TGGALLGRVKAVHNFGAGDILEIAPP------------------GGGPTLLLPFTRAV 132 (161)
T ss_pred CCCCCCCCEEhhhccCCEEEe-CCCCEEEEEEEEccCCCccEEEEEEC------------------CCCcEEEEeccccc
Confidence 999999999999999999997 67889999999999999999999841 25689999999999
Q ss_pred cceeeCCCCEEEEeCCCCcccccC
Q 010869 249 VPIVDMNGREMQITPPKGLLELNL 272 (498)
Q Consensus 249 V~~VDle~~~I~V~~peGLLeL~~ 272 (498)
|++||+++++|+|+||+||||+.-
T Consensus 133 V~~VDl~~~~I~v~~peGLl~~~~ 156 (161)
T PRK13828 133 VPTVDLAAGRVVADPPAEIEGDEP 156 (161)
T ss_pred cCeEECCCCEEEEeCCccccCCCC
Confidence 999999999999999999998854
No 12
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=1.9e-36 Score=331.21 Aligned_cols=185 Identities=18% Similarity=0.195 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccC--CHHHHHHHHHHHhcCCHH-------HHHHHHHhccccccccchhhhhchhhhh
Q 010869 295 KRLIAAKKKLREMEQQHVFHGFRFG--EKYQTSLLANHIVGINSK-------LLQQALQNIEIPSKRWNATELMNATKAE 365 (498)
Q Consensus 295 ~~~~~lk~~L~~~gQ~Hlf~fw~~L--~~~er~~L~~qL~~id~~-------~l~~~~~~~~~s~~~~~~~~~~~~~~~~ 365 (498)
.+.++++++|.++||+|||+||++| +++||++|++||..+|.. .+..+.+.+..+... . ++
T Consensus 25 ~~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~e~~~L~~qL~~ld~~y~g~l~~~~~~~~~~l~~s~~~--~----~~---- 94 (615)
T PLN02830 25 PDQRALVRRLLELGQSHLFEHWPEPGVDDDDKRRLLEQVARLDESYPGGLAAYVSNAKELLADSKEG--V----NP---- 94 (615)
T ss_pred hhHHHHHHHHHHcCcHHHHhhhhccCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccC--C----Cc----
Confidence 3456788999999999999999998 899999999999999987 344444432211100 0 01
Q ss_pred hhhhccc-CCCCCCCCCCCchhhcccchHHHHHHhhhhccCcEEEEEecCCCCCCCccc-CCC-Cccc-CCCcchHHHHH
Q 010869 366 LMISSLK-ISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECD-PHS-VVSE-STANKSLALLQ 441 (498)
Q Consensus 366 ~~~~~~p-iP~e~~~~~~~~~~~~~~~~~~~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~-l~s~-~~~kslfql~a 441 (498)
.+...| +|.+ ...+.++ .... +|++.|+++| ||||||+||||||||+||+ |++ +|.. .+++|+||+++
T Consensus 95 -~~~i~P~vp~~-~~~~~~~-~~~~---~~~~~Gl~~l--~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~ 166 (615)
T PLN02830 95 -FEGWTPSVPEG-EVLEYGS-EEFV---ELEEAGLREA--GNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYI 166 (615)
T ss_pred -hhhcccCCCcc-ccccccc-hhhh---HHHHHHHHHh--CcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHHHH
Confidence 122455 4553 4443333 2233 7999999999 7999999999999999998 643 4542 45899999999
Q ss_pred HHHHHHHHHHhh---cCCccceEEEeCCccchHHHHHhhHhCCCCccCCCcEEEEecCC
Q 010869 442 TLLSDDQRFVKI---ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVSNISESF 497 (498)
Q Consensus 442 erI~~lq~La~~---~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFGL~~~qV~fF~Q~~ 497 (498)
++|+++|++|+. +.++.||||||||+.||+.|++||++|+||||+++||+||+|+.
T Consensus 167 e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~ 225 (615)
T PLN02830 167 ESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEK 225 (615)
T ss_pred HHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCc
Confidence 999999999964 34688999999999999999999999999999999999999985
No 13
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.4e-36 Score=318.07 Aligned_cols=183 Identities=16% Similarity=0.182 Sum_probs=147.2
Q ss_pred HHHHHHHHHcCCcccccccccCCHHHHHHHHHHHhcCCHHHHHHHHHhccccccccchhhhhchhhhhhhhhcccCCCCC
Q 010869 298 IAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEG 377 (498)
Q Consensus 298 ~~lk~~L~~~gQ~Hlf~fw~~L~~~er~~L~~qL~~id~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~piP~e~ 377 (498)
..++..|.++||+|||++|++|+++++..|++||+.+|+.++...+. .+++ .. + +......|+|+.
T Consensus 4 ~~~~~~l~~~Gq~~l~~~w~eL~~~~~~~l~~~ie~l~l~~~~~~~~---~~a~---~~----~---~~~~~~~p~p~~- 69 (477)
T KOG2388|consen 4 TKLHLILLEAGQSHLFTQWPELSEADKESLLDQIEVLNLSRIHGLQR---ISAN---ED----S---KPVGEIRPVPES- 69 (477)
T ss_pred hHHHHHHHHcChHhHhhhchhcCHHHHHHHHHHHHhhcccccchhhh---cChh---hc----c---CcccccCCCCcc-
Confidence 46788899999999999999999999999999999999988766665 1111 10 0 111234556664
Q ss_pred CCCC--CCchhhcccchHHHHHHhhhhccCcEEEEEecCCCCCCCccc-CCC---CcccCCCcchHHHHHHHHHHHHHHH
Q 010869 378 SLGP--CARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECD-PHS---VVSESTANKSLALLQTLLSDDQRFV 451 (498)
Q Consensus 378 ~~~~--~~~~~~~~~~~~~~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~---l~s~~~~kslfql~aerI~~lq~La 451 (498)
.+.+ ....+... .||..|+++|++|+||++|||||||||+|++ |++ ++.++ ++|+||+|||+|+++|++|
T Consensus 70 ~~~~~~~~~~~d~d---~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~-~~slf~~qae~il~lq~~a 145 (477)
T KOG2388|consen 70 KSWPLKERGLDDVD---QWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPS-GKSLFQIQAERILKLQELA 145 (477)
T ss_pred ccceecccCchhhh---HHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCcc-ccchhhhhHHHHHHHHHHH
Confidence 2222 11222232 4999999999999999999999999999998 633 34444 7999999999999999999
Q ss_pred hh--cCCccceEEEeCCccchHHHHHhhHhCCCCccCCCcEEEEecCCC
Q 010869 452 KI--ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVSNISESFL 498 (498)
Q Consensus 452 ~~--~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFGL~~~qV~fF~Q~~~ 498 (498)
.. .+++.||||||||+.|++.|++||+.|+||||+++||.||+|+.+
T Consensus 146 ~~~~~~~~~I~w~ImtS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l 194 (477)
T KOG2388|consen 146 SMAVSDGVDIPWYIMTSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKL 194 (477)
T ss_pred hhhhccCCceEEEEecCCCccHHhHhHHhhcCCCCCChhHeeeeecccc
Confidence 65 456899999999999999999999999999999999999999864
No 14
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=5.9e-35 Score=312.42 Aligned_cols=191 Identities=12% Similarity=0.128 Sum_probs=149.0
Q ss_pred HHHHHcCCcccccccccCCHHHHHHHHHHH-h---cCCHHHHHHHHHhccccccccchhhhhchhhhhhhhhcccCCCCC
Q 010869 302 KKLREMEQQHVFHGFRFGEKYQTSLLANHI-V---GINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEG 377 (498)
Q Consensus 302 ~~L~~~gQ~Hlf~fw~~L~~~er~~L~~qL-~---~id~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~piP~e~ 377 (498)
++|.++||+|||+||++|+++||++|++|| . ++|++++++.++.+..+....... ..+ ........+.|+|.+
T Consensus 3 ~~l~~~gQ~hl~~~~~~l~~~e~~~l~~ql~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~p~~~~- 79 (482)
T PTZ00339 3 KVLTGDGQDHLREALKRRSEGEFTPLATQILSSLTNVDFKHRNAVLEPKLEEYNAEAPV-GID-IDSIHNCNIEPPNNN- 79 (482)
T ss_pred hhhhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHhhhhhccccc-ccc-cccccccccCCCCcc-
Confidence 579999999999999999999999999999 5 899999999998544322110000 000 000112345678875
Q ss_pred CCCCCCc-hhhcccchHHHHHHhhhhccCcEEEEEecCCCCCCCccc-CCCC-cc-cCCCcchHHHHHHHHHHHHHHHhh
Q 010869 378 SLGPCAR-AKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECD-PHSV-VS-ESTANKSLALLQTLLSDDQRFVKI 453 (498)
Q Consensus 378 ~~~~~~~-~~~~~~~~~~~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~l-~s-~~~~kslfql~aerI~~lq~La~~ 453 (498)
.+.+..+ ++... +|++.|+++|++||||||+||||+|||+|++ |+++ +. +.+++|+||++++||.++|++++.
T Consensus 80 ~~~~~~~~~~~~~---~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~ 156 (482)
T PTZ00339 80 TFIDIYEKEKERK---ELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVA 156 (482)
T ss_pred cccccccCHHHHH---HHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhc
Confidence 4444332 33443 7999999999999999999999999999998 7542 22 124799999999999999999843
Q ss_pred --c--CCccceEEEeCCccchHHHHHhhHhCCCCccCCCcEEEEecCCC
Q 010869 454 --E--NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVSNISESFL 498 (498)
Q Consensus 454 --~--~~~~IPwyIMTS~~T~~~T~~fF~~n~yFGL~~~qV~fF~Q~~~ 498 (498)
+ ..+.||||||||+.|++.|++||++|+||||+++||+||+|+.+
T Consensus 157 ~~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~ 205 (482)
T PTZ00339 157 VSGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSL 205 (482)
T ss_pred ccccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCc
Confidence 2 35789999999999999999999999999999999999999863
No 15
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=99.92 E-value=1.4e-25 Score=229.00 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=81.9
Q ss_pred EEEEEecCCCCCCCccc-CCC-Cccc-CCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCC
Q 010869 407 KAMVLVVHNSEEGNECD-PHS-VVSE-STANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~-p~~-l~s~-~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yF 483 (498)
+||||||||||||+||+ |++ ++.+ .+++|+||+++++|+++|++|+.+.++.||||||||+.||+.|++||++|+||
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~yF 80 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENNYF 80 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCCcc
Confidence 58999999999999998 754 3321 34799999999999999999976667899999999999999999999999999
Q ss_pred ccCCCcEEEEecCC
Q 010869 484 AFDSKKVSNISESF 497 (498)
Q Consensus 484 GL~~~qV~fF~Q~~ 497 (498)
||+++||+||+|+.
T Consensus 81 Gl~~~~V~fF~Q~~ 94 (315)
T cd06424 81 GLEKDQVHILKQEK 94 (315)
T ss_pred CCCcccEEEEecCc
Confidence 99999999999985
No 16
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2.5e-24 Score=226.60 Aligned_cols=175 Identities=16% Similarity=0.192 Sum_probs=130.2
Q ss_pred HHHHHHHHHHcCCcccccccccCCHHHHHHHHHHHhcCC--HHHHHHHHHhccccccccchhhhhchhhhhhhhhcccCC
Q 010869 297 LIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGIN--SKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKIS 374 (498)
Q Consensus 297 ~~~lk~~L~~~gQ~Hlf~fw~~L~~~er~~L~~qL~~id--~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~piP 374 (498)
.......+.+..|+|+|..|.++++.+..+...++..+| +.++++.+.. .+... .. ...+..|.-
T Consensus 15 f~~~~~~l~~~~~~h~l~~l~~~s~~~~~~~~~~~~~~d~~f~l~~~~ll~--~s~~s---------~~--~~~ki~~~~ 81 (472)
T COG4284 15 FNSDAVSLAASQQEHLLDKLKQSSEKQALKSFEKLLLLDIFFFLFSRYLLN--TSKAS---------TQ--EWDKIRPPN 81 (472)
T ss_pred hhcchhhhhHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHHHHHHHHhh--cCccc---------ce--eecccCCCC
Confidence 455677889999999999999999967667777766655 4666777653 11110 00 011111111
Q ss_pred CCCCCCCCCchhhcccchHHHHHHhhhhccCcEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhh
Q 010869 375 GEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKI 453 (498)
Q Consensus 375 ~e~~~~~~~~~~~~~~~~~~~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~ 453 (498)
.+ .+. ...+... +|| |+..|..||||||+||||||||+||+ |.++--=..+||+|+++|+.|..++..+
T Consensus 82 ~d-~~~--~~~~~~~---~~~--~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~-- 151 (472)
T COG4284 82 PD-DVV--DYEKKIL---EGW--GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVKDGKSLFDLQAEQIKYLNRQY-- 151 (472)
T ss_pred hh-hhc--cchhhcc---chh--hhhhhhcCceEEEEecCCcccccccCCCceeEEecCCCcHHHHHHHHHHHHHHHh--
Confidence 11 222 1112222 344 89999999999999999999999998 8765321247999999999999999887
Q ss_pred cCCccceEEEeCCccchHHHHHhhHhCCCCccCCCcEEEEecCC
Q 010869 454 ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVSNISESF 497 (498)
Q Consensus 454 ~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFGL~~~qV~fF~Q~~ 497 (498)
++.|||||||| .|++.|+.||.+|||||+|+++|.||+|..
T Consensus 152 --~~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~ 192 (472)
T COG4284 152 --NVDVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSL 192 (472)
T ss_pred --CCCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCC
Confidence 38899999999 999999999999999999999999999985
No 17
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=99.89 E-value=3.3e-23 Score=213.10 Aligned_cols=105 Identities=16% Similarity=0.279 Sum_probs=94.4
Q ss_pred HHHHHHhhhhccCcEEEEEecCCCCCCCccc-CCCC-ccc-CCCcchHHHHHHHHHHHHHHHhh--cCCccceEEEeCCc
Q 010869 393 SLQKKGNHLVSEGKKAMVLVVHNSEEGNECD-PHSV-VSE-STANKSLALLQTLLSDDQRFVKI--ENRASMPLVLVLPA 467 (498)
Q Consensus 393 ~~~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~l-~s~-~~~kslfql~aerI~~lq~La~~--~~~~~IPwyIMTS~ 467 (498)
+|++.|+++|++|+||+|+||||+|||+|++ |+++ |.. .+++|+|++++++|.+++.++.. +.++.||||||||.
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~ 81 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSE 81 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcCh
Confidence 7999999999999999999999999999997 6442 221 24799999999999999999853 56688999999999
Q ss_pred cchHHHHHhhHhCCCCccCCCcEEEEecCC
Q 010869 468 LEMQMLEKLFLDNDHFAFDSKKVSNISESF 497 (498)
Q Consensus 468 ~T~~~T~~fF~~n~yFGL~~~qV~fF~Q~~ 497 (498)
.|++.|++||++|+|||+++++|+||.|+.
T Consensus 82 ~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~ 111 (323)
T cd04193 82 ATHEETRKFFKENNYFGLDPEQVHFFQQGM 111 (323)
T ss_pred hHhHHHHHHHHhCCcCCCCCceEEEEecCc
Confidence 999999999999999999999999999985
No 18
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=99.82 E-value=2.8e-20 Score=189.30 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=76.3
Q ss_pred CcEEEEEecCCCCCCCccc-CCC-CcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCC
Q 010869 405 GKKAMVLVVHNSEEGNECD-PHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDH 482 (498)
Q Consensus 405 GkVavlLlAGGqg~rlG~~-p~~-l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~y 482 (498)
+|||||+||||||||+|++ |++ ++.+ +++|+||+++++|+++++.. .+.||||||||..|+++|++||++|+|
T Consensus 2 ~kvavl~LaGG~GTRLG~~~pKg~~~v~-~~~s~l~l~~~~i~~l~~~~----~~~iPl~iMtS~~T~~~T~~~l~~~~~ 76 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGCTGPKSLIEVR-DGKTFLDLTVQQIEHLNKTY----GVDVPLVLMNSFNTDEDTKKILKKYAG 76 (300)
T ss_pred CcEEEEEecCCcccccCCCCCceeeecC-CCCcHHHHHHHHHHHHHHHc----CCCceEEEECCCcchHHHHHHHHHcCC
Confidence 6999999999999999998 765 3443 47999999999999999864 478999999999999999999999987
Q ss_pred CccCCCcEEEEecCC
Q 010869 483 FAFDSKKVSNISESF 497 (498)
Q Consensus 483 FGL~~~qV~fF~Q~~ 497 (498)
+++||.||+|+.
T Consensus 77 ---~~~~v~~F~Q~~ 88 (300)
T cd00897 77 ---VNVDIHTFNQSR 88 (300)
T ss_pred ---CccCeEEEecCC
Confidence 889999999975
No 19
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=99.80 E-value=1.8e-19 Score=150.26 Aligned_cols=84 Identities=40% Similarity=0.589 Sum_probs=71.5
Q ss_pred EEEEEeeeeeeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHHHHhccc
Q 010869 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLV 158 (498)
Q Consensus 79 ~IG~I~~~HGlkGevkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re~Ae~L~ 158 (498)
+||+|+++||+||||||+++||+|+ .|...+.+|+.. . ....++++|+++|.| ++.+|++|+||||||+|++|+
T Consensus 1 ~vG~I~~~hGlkG~vkv~~~td~~~-~~~~~~~~~~~~--~-~~~~~~~~v~~~~~~--~~~~i~~~~gi~~r~~Ae~l~ 74 (84)
T PF01782_consen 1 VVGRIGKPHGLKGEVKVRPFTDFPE-RLFNLKQVYLEK--R-NGEWRPLKVESVRPH--GKSLIVKFEGIDDREAAEALR 74 (84)
T ss_dssp EEEEEEEEETTTTEEEEEE-SSSGG-GGGGSSCEEEE---E-TTEEEEEEEEEEEEE--TTEEEEEETT--SHHHHHTTT
T ss_pred CEEEECCCEecCEEEEEEEecCCHH-HHcCCCeEEEEE--c-CCceEEEEEEEEEEe--CCEEEEEEcCCCCHHHHHhhC
Confidence 5899999999999999999999999 888899999983 1 235678999999988 579999999999999999999
Q ss_pred CCeEEEeCCC
Q 010869 159 GSTLLAREGD 168 (498)
Q Consensus 159 G~~l~v~~~d 168 (498)
|+.|||+++|
T Consensus 75 g~~l~v~r~~ 84 (84)
T PF01782_consen 75 GCELYVPRDD 84 (84)
T ss_dssp T-EEEEEGCG
T ss_pred CCEEEEECCC
Confidence 9999999885
No 20
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=99.80 E-value=9.2e-20 Score=193.32 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=83.3
Q ss_pred HHHHHhhhhccCcEEEEEecCCCCCCCccc-CCCC-cccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchH
Q 010869 394 LQKKGNHLVSEGKKAMVLVVHNSEEGNECD-PHSV-VSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQ 471 (498)
Q Consensus 394 ~~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~l-~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~ 471 (498)
| +.|+.+++.||||||+||||||||+||+ |+++ +. .+++|+|++++++|..|++-. ++.||||||||..|++
T Consensus 45 ~-~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~~v-~~~~t~ldl~~~qi~~l~~~~----~~~iPl~iMtS~~T~~ 118 (420)
T PF01704_consen 45 W-DEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLIPV-REGKTFLDLIVEQIEALNKKY----GVDIPLYIMTSFNTHE 118 (420)
T ss_dssp H-HHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGSEE-ETTEEHHHHHHHHHHHHHHHH----TTT-EEEEEEETTTHH
T ss_pred c-ccchhHHhhCCEEEEEEcCcccCccCCCCCCcceec-CCcccHHHHHHHHHHHHhccc----cccceEEEecCcccHH
Confidence 5 8899999999999999999999999998 7664 33 347999999999998877654 4789999999999999
Q ss_pred HHHHhhHhCCCCccCCCcEEEEecCC
Q 010869 472 MLEKLFLDNDHFAFDSKKVSNISESF 497 (498)
Q Consensus 472 ~T~~fF~~n~yFGL~~~qV~fF~Q~~ 497 (498)
.|++||++ |||++.+ |+||+|+.
T Consensus 119 ~T~~~l~k--yfg~~~~-v~~F~Q~~ 141 (420)
T PF01704_consen 119 DTRKFLEK--YFGLDVD-VFFFKQSK 141 (420)
T ss_dssp HHHHHHHH--GCGSSCC-EEEEEE-E
T ss_pred HHHHHHHH--hcCCCcc-eEEEeecC
Confidence 99999999 9999988 99999974
No 21
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=99.79 E-value=2.6e-19 Score=191.21 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=77.8
Q ss_pred hhhccCcEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhH
Q 010869 400 HLVSEGKKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (498)
Q Consensus 400 ~~Is~GkVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~ 478 (498)
++| +|+|||+||||||||+||+ |+++-...+++|+|++++++|.++++.. .+.||||||||..|++.|++||+
T Consensus 75 ~~L--~k~avlkLnGGlGTrmG~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~----g~~vPl~iMtS~~T~~~T~~~l~ 148 (469)
T PLN02474 75 KLL--DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNKKY----GCNVPLLLMNSFNTHDDTQKIVE 148 (469)
T ss_pred HHH--hcEEEEEecCCcccccCCCCCceeEEcCCCCcHHHHHHHHHHHHHHHc----CCCceEEEECCCchhHHHHHHHH
Confidence 356 6999999999999999998 8764322357999999999999988754 47899999999999999999999
Q ss_pred hCCCCccCCCcEEEEecCC
Q 010869 479 DNDHFAFDSKKVSNISESF 497 (498)
Q Consensus 479 ~n~yFGL~~~qV~fF~Q~~ 497 (498)
+|+||+ .+|.||+|+.
T Consensus 149 k~~~~~---~~i~~F~Q~~ 164 (469)
T PLN02474 149 KYTNSN---IEIHTFNQSQ 164 (469)
T ss_pred HcCCCc---cceEEEecCc
Confidence 999985 6899999975
No 22
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.66 E-value=2.5e-16 Score=158.29 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=74.6
Q ss_pred EEEEEecCCCCCCCccc-CCCC-ccc-CCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCC
Q 010869 407 KAMVLVVHNSEEGNECD-PHSV-VSE-STANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~-p~~l-~s~-~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yF 483 (498)
||||+||||+|||+|++ |+++ +.. .+++++|++++++|.++|.+++ ..+.||||||||..|++.|++||++|+
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~--~~~~Ip~~imts~~t~~~t~~~l~~~~-- 76 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDL--YSCKIPEQLMNSKYTHEKTQCYFEKIN-- 76 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhh--cCCCCCEEEEcCchhHHHHHHHHHHcC--
Confidence 69999999999999998 6432 211 2379999999999999999874 357799999999999999999999999
Q ss_pred ccCCCcEEEEecCC
Q 010869 484 AFDSKKVSNISESF 497 (498)
Q Consensus 484 GL~~~qV~fF~Q~~ 497 (498)
+++++|+||+|+.
T Consensus 77 -~~~~~v~~f~Q~~ 89 (266)
T cd04180 77 -QKNSYVITFMQGK 89 (266)
T ss_pred -CCCCceEEEEeCC
Confidence 7889999999985
No 23
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....
Probab=98.80 E-value=2.6e-08 Score=81.38 Aligned_cols=78 Identities=28% Similarity=0.510 Sum_probs=60.4
Q ss_pred CCccchhccCCcEEEecCCCeEeEEEEEe-ccCCCceEEEEEeecccccccCccccccCcCCCCCcEEEEecccCcccee
Q 010869 174 DGEFYTRDLVGMRVVMKETGELVGTVVNV-FNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252 (498)
Q Consensus 174 edEfY~~DLIGl~V~d~~~G~~LG~V~dV-~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V~~V 252 (498)
+++||++||+|++|++ .+|+.+|+|.|| ++.+++.+..+....... ....++.++|||. ..+
T Consensus 1 ~~~~~~s~l~g~~V~~-~~G~~iG~V~di~id~~~~~i~~i~v~~~~~------------~~~~~~~~~iP~~----~~v 63 (79)
T PF05239_consen 1 MDEFRLSELIGKEVID-RDGEKIGKVKDIVIDPKTGKIVGIVVSSGGF------------FGIGGKKVLIPWD----QIV 63 (79)
T ss_dssp -CHGCHHHHTTSEEEE-TTSCEEEEEEEEEEETTTTEEEEEEEEETTS------------TCSSSEEEEEEGG----EEE
T ss_pred CCeEEhHHccCCEEEc-CCCCEEEEEEEEEEeCCCCCEEEEEEcCCCc------------cCcCCcEEEEcCe----EeE
Confidence 5799999999999998 569999999999 888788876655421100 0014589999999 678
Q ss_pred eCCCCEEEEeCCCCcc
Q 010869 253 DMNGREMQITPPKGLL 268 (498)
Q Consensus 253 Dle~~~I~V~~peGLL 268 (498)
+..++.|.|++++++|
T Consensus 64 ~~~~~~i~v~~~~~~~ 79 (79)
T PF05239_consen 64 DIGGDRIIVDPPKEQL 79 (79)
T ss_dssp EECTTEEEESSSTG--
T ss_pred EecCCEEEEcCCCCCC
Confidence 9999999999999876
No 24
>cd00226 PRCH Photosynthetic reaction center (RC) complex, subunit H; RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to produce ATP by ATP synthase. Subunit H is positioned mainly in the cytoplasm with one transmembrane alpha helix. Provides proton transfer pathway (water channels) connecting the terminal quinone electron acceptor of RC, to the aqueous phase. Found in photosynthetic bacteria: alpha, beta, and gamma proteobacteria.
Probab=97.16 E-value=0.00096 Score=66.48 Aligned_cols=67 Identities=22% Similarity=0.303 Sum_probs=51.9
Q ss_pred hccCCcEEEecCCCeEeEEEEEec-cC--CCceEEEEEeecccccccCccccccCcCCCCCcEEEEecccCccceeeCCC
Q 010869 180 RDLVGMRVVMKETGELVGTVVNVF-NS--GANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256 (498)
Q Consensus 180 ~DLIGl~V~d~~~G~~LG~V~dV~-~~--ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V~~VDle~ 256 (498)
.|++||.|+. .+|+.+|+|+||. +. +.-+.|+|++. ..++.+|||+.- ++++.
T Consensus 146 ~DprGl~V~g-~DGevvGtV~Dv~vD~~e~~iRYLeVdtg------------------~~gkkVLLPi~~-----~rId~ 201 (246)
T cd00226 146 VDPRGLPVVG-ADGEVAGKVTDLWVDRPEQLFRYLEVELA------------------GGGRTVLLPMGF-----AKVKS 201 (246)
T ss_pred CCCCCCEeEc-CCCcEeEEEEEEEEcCCcceEEEEEEEcC------------------CCCCEEEEEeEE-----EEecC
Confidence 5899999997 5899999999994 44 47799999971 147899999664 34458
Q ss_pred CEEEEe-CCCCcccc
Q 010869 257 REMQIT-PPKGLLEL 270 (498)
Q Consensus 257 ~~I~V~-~peGLLeL 270 (498)
++|.|+ +..++++-
T Consensus 202 ~~V~V~~Lt~~Q~~~ 216 (246)
T cd00226 202 DRVKVTAILSEHFAN 216 (246)
T ss_pred CEEEEecccHHHHhc
Confidence 999998 56666543
No 25
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.03 E-value=0.0022 Score=67.95 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=68.6
Q ss_pred HHHhhhhccCcEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHH
Q 010869 396 KKGNHLVSEGKKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLE 474 (498)
Q Consensus 396 ~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~ 474 (498)
+.+-+.++ |.|||=|-||.||-.||. |+++..=-.+.|.+.+--.-| |.|-+ .=.+.+|+|.|+|=.|++.|.
T Consensus 95 ~~~~~~L~--KLavlKLNGGlGttmGc~gPKS~ieVR~g~tFLDL~V~QI---e~LN~-~Y~~dVPlvLMNSfnTdedT~ 168 (498)
T KOG2638|consen 95 ELSKSLLN--KLAVLKLNGGLGTTMGCKGPKSVIEVRDGLTFLDLTVRQI---ENLNK-TYNVDVPLVLMNSFNTDEDTQ 168 (498)
T ss_pred hhHHHhhh--heEEEEecCCcCCccccCCCceeEEEcCCCchhHHHHHHH---HHHHh-hcCCCCCEEEecccccchHHH
Confidence 55666777 999999999999999997 866542222466555443322 23321 125789999999999999999
Q ss_pred HhhHhCCCCccCCCcEEEEecCC
Q 010869 475 KLFLDNDHFAFDSKKVSNISESF 497 (498)
Q Consensus 475 ~fF~~n~yFGL~~~qV~fF~Q~~ 497 (498)
++.+++.++ .-+|.-|.|+.
T Consensus 169 kil~ky~~~---kv~i~TF~QS~ 188 (498)
T KOG2638|consen 169 KILKKYAGS---KVDIKTFNQSK 188 (498)
T ss_pred HHHHHhcCC---ceeEEEecccc
Confidence 999999887 45688899874
No 26
>COG1873 Protein implicated in RNA metabolism, contains PRC-barrel domain [General function prediction only]
Probab=93.94 E-value=0.17 Score=43.05 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=38.6
Q ss_pred ccchhccCCcEEEecCCCeEeEEEEEec---cCCCceEEEEEeecccccccCccccccCcCCCCCcEEEEecc
Q 010869 176 EFYTRDLVGMRVVMKETGELVGTVVNVF---NSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV 245 (498)
Q Consensus 176 EfY~~DLIGl~V~d~~~G~~LG~V~dV~---~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv 245 (498)
.+++.+|.|++|++ .+|..+|+|.|+. ++|.---|.|...+...... ..++.+.|||-
T Consensus 5 ~~~~s~l~gk~V~~-~~G~~vG~V~dv~ld~~~g~i~~l~v~~~~~~l~~~-----------~k~~~v~IP~~ 65 (87)
T COG1873 5 MMRLSELLGKEVIT-NDGKYVGTVSDVVLDIKEGKITGLLVIPTNKGLFLF-----------GKGKEVIVPYE 65 (87)
T ss_pred hheHHHhcCcEEEc-CCCeEEEEEEeEEEEccCCcEEEEEEecCCcccccc-----------CCCcEEEEehh
Confidence 46899999999998 4999999999993 45544444454321111110 12258999996
No 27
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=93.92 E-value=0.00052 Score=73.81 Aligned_cols=183 Identities=20% Similarity=0.106 Sum_probs=138.9
Q ss_pred EeecCCceEEEEecCCCCHHHHhcccCCeEEEeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEE
Q 010869 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLH 212 (498)
Q Consensus 133 R~~~~~~~~ivkf~GId~re~Ae~L~G~~l~v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~ 212 (498)
++++....|.+.+.+-+++++ -...|..+.-..+..+-|-.|.+|...+.++.+-..+.|... ...+++.+|+++|.
T Consensus 64 ~p~p~~~~~~~~~~~~~d~d~-~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~--~~slf~~qae~il~ 140 (477)
T KOG2388|consen 64 RPVPESKSWPLKERGLDDVDQ-WWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPS--GKSLFQIQAERILK 140 (477)
T ss_pred CCCCccccceecccCchhhhH-HHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCcc--ccchhhhhHHHHHH
Confidence 334445678899999999999 888999998888888889999999999999988765556544 67889999999987
Q ss_pred EEeecccccccCccccccCcCCCCCcEEEEecccCccceeeCCCCEEEEeCCCCcccccCCcchhhHHHHHHhhHHHHHH
Q 010869 213 VMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKK 292 (498)
Q Consensus 213 V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V~~VDle~~~I~V~~peGLLeL~~~~~~~~k~~~~~~~~~~~~~ 292 (498)
+....+.. .. .+....|++++.++..+.+++--. .+.+-||.+-+-...++.|+++++.+|| ..+
T Consensus 141 lq~~a~~~-----------~~-~~~~I~w~ImtS~~T~e~T~~~f~--~~~~FGl~~~qv~~f~Q~~l~c~~~~gk-~~l 205 (477)
T KOG2388|consen 141 LQELASMA-----------VS-DGVDIPWYIMTSAFTHEATLEYFE--SHKYFGLKPEQVTFFQQGKLPCLDLDGK-FIL 205 (477)
T ss_pred HHHHHhhh-----------hc-cCCceEEEEecCCCccHHhHhHHh--hcCCCCCChhHeeeeecccccccccCCc-eec
Confidence 76421111 11 236788999999999998876655 8899999999999999999999999999 777
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCHHHHHHHHHHHhcCC
Q 010869 293 FQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGIN 335 (498)
Q Consensus 293 ~~~~~~~lk~~L~~~gQ~Hlf~fw~~L~~~er~~L~~qL~~id 335 (498)
-+++..++....+..-|.|+++.+ .+-++|..++..+-.+|
T Consensus 206 e~k~~~a~ap~gngg~y~ai~~~l--~dm~~rgi~~~hiy~Vd 246 (477)
T KOG2388|consen 206 EQKNSLAAAPDGNGGLYRAIKDQL--EDMAARGIFYDHIYCVD 246 (477)
T ss_pred cCccchhcCCCCCcHHHHHHHhhh--hHHHhhcccEEEEEEec
Confidence 777777766666666666666662 22344444555555555
No 28
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=91.12 E-value=0.53 Score=46.58 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=40.3
Q ss_pred EEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 407 KAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
|++|++|||+|+|.|.+ |+- -.+..|+.+++.-.+.+.+.. ..=-.+|++++...+.++++..+
T Consensus 1 V~aIilAaG~G~R~g~~~pKQ-f~~l~Gkpvl~~tl~~f~~~~--------~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQ-FLELGGKPVLEYTLEAFLASP--------EIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GG-GSEETTEEHHHHHHHHHHTTT--------TESEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCe-eeEECCeEeHHHHHHHHhcCC--------CCCeEEEEecchhHHHHHHhhcC
Confidence 78999999999999876 532 112347999887776443211 11124566677777777776666
No 29
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=89.23 E-value=1.4 Score=44.09 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=49.0
Q ss_pred EEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCC
Q 010869 407 KAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDH 482 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~y 482 (498)
+.+|.||.|.|+|+|-+ |+.|- +..|+++...+-+ +|++.|. =-.+|+|++...+-.++|..++++
T Consensus 4 ~kavILAAG~GsRlg~~~PK~Lv-ev~gr~ii~~~i~------~L~~~gi---~e~vvV~~g~~~~lve~~l~~~~~ 70 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKALV-EVGGREIIYRTIE------NLAKAGI---TEFVVVTNGYRADLVEEFLKKYPF 70 (239)
T ss_pred eeEEEEecccccccCCCCCchhh-hcCCeEeHHHHHH------HHHHcCC---ceEEEEeccchHHHHHHHHhcCCc
Confidence 35678899999999985 65433 2347888877766 5554332 245899999999999999999886
No 30
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=88.74 E-value=0.88 Score=44.36 Aligned_cols=65 Identities=8% Similarity=0.092 Sum_probs=39.7
Q ss_pred cEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 406 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
.+++|+||||+|+|.|-. |+.+ .+..|+++++.-.+++... ...=..+|.|+.......+++..+
T Consensus 2 ~~~~iIlAaG~g~R~g~~~~K~l-~~l~gkpll~~~i~~~~~~--------~~~~~ivVv~~~~~~~~~~~~~~~ 67 (230)
T PRK13385 2 NYELIFLAAGQGKRMNAPLNKMW-LDLVGEPIFIHALRPFLAD--------NRCSKIIIVTQAQERKHVQDLMKQ 67 (230)
T ss_pred ceEEEEECCeeccccCCCCCcce-eEECCeEHHHHHHHHHHcC--------CCCCEEEEEeChhhHHHHHHHHHh
Confidence 378999999999998753 4322 2234799988777744321 111245566666555555555544
No 31
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=88.74 E-value=0.44 Score=49.78 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=46.4
Q ss_pred CcEEEEEecCCCCCCCccc----CCCCcccCCCc-chHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 405 GKKAMVLVVHNSEEGNECD----PHSVVSESTAN-KSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 405 GkVavlLlAGGqg~rlG~~----p~~l~s~~~~k-slfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
+++.+|+||||.|+|+.=- |+.+ .|..+| .+.+.+-+ .|++.|-+ --+|.|.-.-.+..++||.+
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpL-lpV~gk~PlIe~~l~------~L~~~Gi~---~I~iv~~~~~~~~I~~~l~~ 70 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLAS-LPFGGRYRLIDFPLS------NMVNAGIR---NVFIFFKNKERQSLFDHLGS 70 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccc-cccCCeeeEEEEEhh------hhhccCCC---EEEEEeCCCcHHHHHHHHhC
Confidence 4788999999999998321 3211 123455 56555554 44433311 23566665444589999998
Q ss_pred CCCCccCCC
Q 010869 480 NDHFAFDSK 488 (498)
Q Consensus 480 n~yFGL~~~ 488 (498)
+.+||++..
T Consensus 71 ~~~~~~~~~ 79 (369)
T TIGR02092 71 GREWDLHRK 79 (369)
T ss_pred CCCCCcccc
Confidence 888998754
No 32
>TIGR01150 puhA photosynthetic reaction center, subunit H, bacterial. This model describes the photosynthetic reaction center H subunit in non-oxygenic photosynthetic bacteria. The reaction center is an integral membrane pigment-protein that carries out light-driven electron transfer reactions. At the core of reaction center is a collection light-harvesting cofactors and closely associated polypeptides. The core protein complex is made of L, M and H subunits. The common cofactors include bacterichlorophyll, bacteriopheophytins, ubiquinone and no-heme ferrous iron. The net result of electron tranfer reactions is the establishment of proton electrochemical gradient and production of reducing equivalents in the form of NADH. Ultimately, the process results in the reduction of C02 to carbohydrates(C6H12O6) In non-oxygenic organisms, the electron donor is an organic acid rather than water. Much of our current functional understanding of photosynthesis comes from the structural determination
Probab=88.17 E-value=1.5 Score=43.96 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=44.5
Q ss_pred ccCCcEEEecCCCeEeEEEEEe-ccCCCc--eEEEEEeecccccccCccccccCcCCCCC-cEEEEecccCccceeeCCC
Q 010869 181 DLVGMRVVMKETGELVGTVVNV-FNSGAN--DLLHVMCYSSVNVIEGSEEASSSASDASG-RLVWIPFVEEIVPIVDMNG 256 (498)
Q Consensus 181 DLIGl~V~d~~~G~~LG~V~dV-~~~ga~--DlL~V~~~~~~~~~~~~~~~~~~~~~~~g-kevLIPfv~e~V~~VDle~ 256 (498)
|-.||.|+- .+|+..|+|+|+ .+.+.+ -.|+|+. .++ +.+|+|+.=. .| .+
T Consensus 150 DPrG~pV~g-~Dg~v~GtV~D~WVDr~E~~iRYlEVel-------------------~~~~~~vLlP~~f~---~i--~~ 204 (252)
T TIGR01150 150 DPRGLPVVA-ADGEVAGKVTDLWVDRPEQYFRYLEVEL-------------------AGGARTALLPMGMC---KV--KS 204 (252)
T ss_pred CCCCCeeEc-CCCceeeEEEEEEEcCccceeeEEEEEe-------------------cCCCceEEecccce---ec--cC
Confidence 678999996 789999999999 577766 5678876 144 7899999833 23 67
Q ss_pred CEEEEeC
Q 010869 257 REMQITP 263 (498)
Q Consensus 257 ~~I~V~~ 263 (498)
++|.|+-
T Consensus 205 ~~V~v~a 211 (252)
T TIGR01150 205 DRVVVNS 211 (252)
T ss_pred CcEEEEE
Confidence 7788764
No 33
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=87.95 E-value=1.2 Score=42.75 Aligned_cols=60 Identities=5% Similarity=0.025 Sum_probs=37.3
Q ss_pred EEEEEecCCCCCCCccc--CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhC
Q 010869 407 KAMVLVVHNSEEGNECD--PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~--p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n 480 (498)
+.+|+||||.|+|.|.- |. .+..||.|...-.+ +|.+ ++=-.|+-||++| ..|++|..+-
T Consensus 1 m~~iiMAGGrGtRmg~~EKPl---leV~GkpLI~~v~~------al~~----~~d~i~v~isp~t-p~t~~~~~~~ 62 (177)
T COG2266 1 MMAIIMAGGRGTRMGRPEKPL---LEVCGKPLIDRVLE------ALRK----IVDEIIVAISPHT-PKTKEYLESV 62 (177)
T ss_pred CceEEecCCcccccCCCcCcc---hhhCCccHHHHHHH------HHHh----hcCcEEEEeCCCC-HhHHHHHHhc
Confidence 35799999999999863 31 22346666544433 2221 1223578888877 5677777654
No 34
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=87.77 E-value=0.83 Score=43.58 Aligned_cols=61 Identities=5% Similarity=-0.006 Sum_probs=39.0
Q ss_pred EEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 408 AMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 408 avlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
.+|+||||.|+|+|..++.+ .+..+++++....+.+... + .=..||.|+.. .+.|+.|+++
T Consensus 2 ~aIILAgG~gsRmg~~~K~L-l~i~GkplI~~vi~~l~~~------~---i~~I~Vv~~~~-~~~~~~~l~~ 62 (183)
T TIGR00454 2 DALIMAGGKGTRLGGVEKPL-IEVCGRCLIDHVLSPLLKS------K---VNNIIIATSPH-TPKTEEYINS 62 (183)
T ss_pred eEEEECCccCccCCCCCceE-eEECCEEHHHHHHHHHHhC------C---CCEEEEEeCCC-HHHHHHHHhh
Confidence 57899999999997543222 1234789888877754321 1 12457778764 4567777765
No 35
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=87.73 E-value=0.57 Score=44.91 Aligned_cols=42 Identities=10% Similarity=-0.072 Sum_probs=32.1
Q ss_pred hccCcEEEEEecCCCCCCCcccCCCCcccCCC-cchHHHHHHHHH
Q 010869 402 VSEGKKAMVLVVHNSEEGNECDPHSVVSESTA-NKSLALLQTLLS 445 (498)
Q Consensus 402 Is~GkVavlLlAGGqg~rlG~~p~~l~s~~~~-kslfql~aerI~ 445 (498)
+..-++++|+||||+++|.|.+.--++. .+ +++++...+++.
T Consensus 4 ~~~~~i~~vILAgG~s~RmG~~K~ll~~--~g~~~ll~~~i~~l~ 46 (196)
T PRK00560 4 PMIDNIPCVILAGGKSSRMGENKALLPF--GSYSSLLEYQYTRLL 46 (196)
T ss_pred ccccCceEEEECCcccccCCCCceEEEe--CCCCcHHHHHHHHHH
Confidence 4456899999999999999976422333 36 999988888765
No 36
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=87.41 E-value=0.95 Score=45.55 Aligned_cols=66 Identities=9% Similarity=0.052 Sum_probs=39.9
Q ss_pred cCcEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhH
Q 010869 404 EGKKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (498)
Q Consensus 404 ~GkVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~ 478 (498)
..++++|+||||+|+|.|.. |+-+- +..|+++++...+++.++.. .=..+|.++....+..+++++
T Consensus 22 ~~~i~aIILAAG~gsRmg~~~pKqll-~l~Gkpll~~tl~~~~~~~~--------i~~IvVV~~~~~~~~~~~~~~ 88 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMGANMPKQYL-PLLGQPIALYSLYTFARMPE--------VKEIVVVCDPSYRDVFEEAVE 88 (252)
T ss_pred cCceEEEEEcccccccCCCCCCccee-EECCeEHHHHHHHHHHhCCC--------CCeEEEEeCHHHHHHHHHHHH
Confidence 34688999999999999875 53321 23478888877775543211 113445665554554544443
No 37
>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.
Probab=87.05 E-value=1.1 Score=37.15 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=36.5
Q ss_pred chhccCCcEEEecCCCeEeEEE--EEe-cc--CCCceEEEEEeecccccccCccccccCcCCCCCcEEEEeccc
Q 010869 178 YTRDLVGMRVVMKETGELVGTV--VNV-FN--SGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246 (498)
Q Consensus 178 Y~~DLIGl~V~d~~~G~~LG~V--~dV-~~--~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~ 246 (498)
+++||.|++|++-.+|+.+|.| .|+ ++ +|.---+.|...+..-..+ ..++++.|||-.
T Consensus 1 r~seL~~keVIni~~G~~lG~v~~~Dl~iD~~~G~I~aiIi~~~~~~~~~~-----------~~~~~~~Ipw~~ 63 (76)
T TIGR02888 1 RLSDLRGKEIINVNDGERLGVIGNIDLEIDEEDGRILSLIIPGKGKKFGLF-----------SKGEEIEIPWDA 63 (76)
T ss_pred CHHHccCCCEEECCCCcEeeccccceEEEECCCCEEEEEEEeCCCcEEEee-----------cCCcEEEEEhhh
Confidence 3579999999998899999999 777 34 4543334443211100000 135678999974
No 38
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=86.17 E-value=0.36 Score=35.22 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=13.4
Q ss_pred CCCCccC---CCcEEEEe
Q 010869 480 NDHFAFD---SKKVSNIS 494 (498)
Q Consensus 480 n~yFGL~---~~qV~fF~ 494 (498)
|+|||++ ++|||||-
T Consensus 4 n~~FGie~~~sdqIWFYG 21 (40)
T PF13106_consen 4 NEWFGIEECKSDQIWFYG 21 (40)
T ss_pred hhhcCccccccccEEEee
Confidence 8999999 89999983
No 39
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=85.63 E-value=1.5 Score=44.39 Aligned_cols=62 Identities=10% Similarity=-0.048 Sum_probs=41.8
Q ss_pred EEEEecCCCCCCCc----c-cCCC-CcccCCC-cchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 408 AMVLVVHNSEEGNE----C-DPHS-VVSESTA-NKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 408 avlLlAGGqg~rlG----~-~p~~-l~s~~~~-kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
-+|+||||.|+|+. . .|+. ++. .+ ++++|...+|+..+. ..=..+|+|+......+++++.+
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l--~g~~~li~~~l~~l~~~~--------~~~~i~vvt~~~~~~~v~~~l~~ 70 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKL--FGDKSLLQQTLDRLKGLV--------PPDRILVVTNEEYRFLVREQLPE 70 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEc--CCCCcHHHHHHHHHhcCC--------CCCcEEEEechHHHHHHHHHHhh
Confidence 36888999999984 2 2432 222 34 899988888654221 11267889988777778888866
No 40
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=85.37 E-value=3.1 Score=42.71 Aligned_cols=78 Identities=5% Similarity=0.077 Sum_probs=48.3
Q ss_pred cEEEEEecCCCCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCC
Q 010869 406 KKAMVLVVHNSEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 481 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~ 481 (498)
.+-+|+||||.|||+.-- |+.+ .|..+|.+++..-+ .|+..|-+ --+|+|...-.+..+++|.+..
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~L-lpv~gkPmI~~~l~------~l~~aGi~---~I~ii~~~~~~~~~~~~l~~g~ 72 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQL-LPIYDKPMIYYPLS------TLMLAGIR---DILIISTPQDTPRFQQLLGDGS 72 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceE-eEECCEEHHHHHHH------HHHHCCCC---EEEEEecCCchHHHHHHHcCcc
Confidence 367899999999998532 3211 13456887777665 33332321 2334555555567889998878
Q ss_pred CCccCCCcEEEEecC
Q 010869 482 HFAFDSKKVSNISES 496 (498)
Q Consensus 482 yFGL~~~qV~fF~Q~ 496 (498)
.||++ +.+..|+
T Consensus 73 ~~g~~---i~y~~q~ 84 (292)
T PRK15480 73 QWGLN---LQYKVQP 84 (292)
T ss_pred ccCce---eEEEECC
Confidence 88874 4455554
No 41
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=84.24 E-value=1.6 Score=45.70 Aligned_cols=64 Identities=9% Similarity=-0.112 Sum_probs=43.4
Q ss_pred EEEEEecCCCCCCCc-c----cCCC-CcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 407 KAMVLVVHNSEEGNE-C----DPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 407 VavlLlAGGqg~rlG-~----~p~~-l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
+.-|+||||+|+||= . +|+- +.. .+++||||.-.+|+..+.. .-..+++|++..+.-+++=+.+
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L-~~~~Sllq~T~~R~~~l~~--------~~~~~vVtne~~~f~v~eql~e 71 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKL-FGDLSLLQQTVKRLAFLGD--------IEEPLVVTNEKYRFIVKEQLPE 71 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceee-CCCCcHHHHHHHHHhhcCC--------ccCeEEEeCHHHHHHHHHHHhh
Confidence 346889999999981 1 1432 122 2369999988887765432 2346788998888888877775
No 42
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=84.12 E-value=4.4 Score=39.09 Aligned_cols=68 Identities=7% Similarity=0.048 Sum_probs=43.2
Q ss_pred EEEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCC
Q 010869 408 AMVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (498)
Q Consensus 408 avlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yF 483 (498)
.+|+||||.|+|++- . |+.+ .|..++++++...+.+ +..+- =..+|+|+. ..+..++++.+...+
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~l-~~i~g~~li~~~l~~l------~~~~~---~~i~vv~~~-~~~~~~~~~~~~~~~ 70 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQL-IPVAGKPIIQYAIEDL------REAGI---EDIGIVVGP-TGEEIKEALGDGSRF 70 (236)
T ss_pred eEEEECCCccccccccccCCCcee-eEECCcchHHHHHHHH------HHCCC---CEEEEEcCC-CHHHHHHHhcchhhc
Confidence 578889999999852 2 4322 1234688887766643 32221 134677776 778888888876666
Q ss_pred ccC
Q 010869 484 AFD 486 (498)
Q Consensus 484 GL~ 486 (498)
|++
T Consensus 71 ~~~ 73 (236)
T cd04189 71 GVR 73 (236)
T ss_pred CCe
Confidence 653
No 43
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=83.77 E-value=2.1 Score=36.99 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=24.4
Q ss_pred ceEEEEecCCCCHHHHhcccCCeEEEe
Q 010869 139 KSWILTFEGIDTVEQARPLVGSTLLAR 165 (498)
Q Consensus 139 ~~~ivkf~GId~re~Ae~L~G~~l~v~ 165 (498)
+..||||+||||+++|..|.|..++..
T Consensus 26 ~~~liKi~gv~s~~eA~~y~gk~v~yk 52 (100)
T COG2451 26 NVSLIKIEGVDSPEEAQFYLGKRVCYK 52 (100)
T ss_pred ceEEEEEecCCCHHHHHhhhccEEEEE
Confidence 578999999999999999999987664
No 44
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=82.43 E-value=3.5 Score=41.92 Aligned_cols=90 Identities=28% Similarity=0.407 Sum_probs=60.6
Q ss_pred EeEEEEEeccCCCceEEEEEeecccccccCccccccCcCCCCCcEEEEeccc---Ccccee---eCC-----CCEEEEeC
Q 010869 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE---EIVPIV---DMN-----GREMQITP 263 (498)
Q Consensus 195 ~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~---e~V~~V---Dle-----~~~I~V~~ 263 (498)
.+|+|.+|.++||.-.| -++ +|.+-|||.-+ -.|++| =-+ -+.|.|++
T Consensus 15 Vv~tV~~V~~~GAyv~L-~EY--------------------~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~ 73 (269)
T COG1093 15 VVGTVKQVADYGAYVEL-DEY--------------------PGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDP 73 (269)
T ss_pred EEEEEEEeeccccEEEe-ecc--------------------CCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcC
Confidence 68999999999986433 222 56788888643 122222 112 23467788
Q ss_pred CCCcccccCCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010869 264 PKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAKKKLR 305 (498)
Q Consensus 264 peGLLeL~~~~~~~~k~~~~~~~~~~~~~~~~~~~~lk~~L~ 305 (498)
-.|-+||.++.=.-..+...-++||..+|+-+-++-+-++|.
T Consensus 74 ~rg~IDLSlkrV~~~q~~~k~~~wk~~qka~klle~aaekl~ 115 (269)
T COG1093 74 KRGHIDLSLKRVTEHQRRKKIQEWKKEQKADKLLELAAEKLG 115 (269)
T ss_pred CCCeEeeehhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 889999988544444444456799999998888877777764
No 45
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=81.56 E-value=1.7 Score=37.08 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=24.8
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEEEe
Q 010869 138 QKSWILTFEGIDTVEQARPLVGSTLLAR 165 (498)
Q Consensus 138 ~~~~ivkf~GId~re~Ae~L~G~~l~v~ 165 (498)
.+..|||++||+|+++|+-|.|..+..-
T Consensus 19 ~~~aLlkiegv~~~~~a~fylGKrv~yv 46 (87)
T PRK04337 19 NRQVIIKPLGVDDREEAAKLIGRKVIWK 46 (87)
T ss_pred CceEEEEEcCcCCHHHHHhhcCceEEEE
Confidence 4689999999999999999999987543
No 46
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=80.41 E-value=6.9 Score=37.47 Aligned_cols=71 Identities=10% Similarity=0.104 Sum_probs=42.5
Q ss_pred EEEecCCCCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccce-EEEeCCccchHHHHHhhHhCCCC
Q 010869 409 MVLVVHNSEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMP-LVLVLPALEMQMLEKLFLDNDHF 483 (498)
Q Consensus 409 vlLlAGGqg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IP-wyIMTS~~T~~~T~~fF~~n~yF 483 (498)
+|+||||.|+|++-- |+.+ .|..++++++...+.+. +.| |. -+|.| +...+...++|.+ .++
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~l-lpi~g~~li~~~l~~l~------~~g----i~~i~iv~-~~~~~~i~~~~~~-~~~ 68 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPL-VPVAGKPLIDHALDRLA------AAG----IRRIVVNT-HHLADQIEAHLGD-SRF 68 (221)
T ss_pred EEEEcCCCCCccccccCCCCCce-eeECCEEHHHHHHHHHH------HCC----CCEEEEEc-cCCHHHHHHHHhc-ccC
Confidence 478899999998631 3321 12346888877776443 222 22 23444 5677888888887 556
Q ss_pred ccCCCcEEEEec
Q 010869 484 AFDSKKVSNISE 495 (498)
Q Consensus 484 GL~~~qV~fF~Q 495 (498)
|+ +|.+..|
T Consensus 69 ~~---~i~~~~~ 77 (221)
T cd06422 69 GL---RITISDE 77 (221)
T ss_pred Cc---eEEEecC
Confidence 65 4444444
No 47
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=79.82 E-value=4.1 Score=42.70 Aligned_cols=73 Identities=3% Similarity=-0.060 Sum_probs=48.3
Q ss_pred CcEEEEEecCCCCCCCccc----CCCCcccCCCc-chHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 405 GKKAMVLVVHNSEEGNECD----PHSVVSESTAN-KSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 405 GkVavlLlAGGqg~rlG~~----p~~l~s~~~~k-slfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
+++-+|+||||.|+|+.-- |+.+ .|..++ .+++.+-+ .|++.|-+ -.+|+|. ...+..++||.+
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~l-lpv~gk~pli~~~l~------~l~~~Gi~---~i~iv~~-~~~~~i~~~~~~ 70 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPA-VPFGGKYRIIDFTLS------NCANSGID---TVGVLTQ-YQPLELNNHIGI 70 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccce-eeeCCceeehhHHHH------HHHhCCCC---EEEEEec-CCHHHHHHHHhC
Confidence 4788999999999998642 4321 133456 57777766 34432311 2456664 577889999988
Q ss_pred CCCCccCCC
Q 010869 480 NDHFAFDSK 488 (498)
Q Consensus 480 n~yFGL~~~ 488 (498)
...||++..
T Consensus 71 ~~~~~~~~~ 79 (380)
T PRK05293 71 GSPWDLDRI 79 (380)
T ss_pred CCcccccCC
Confidence 888887753
No 48
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=79.79 E-value=4.8 Score=36.36 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.5
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEEE
Q 010869 138 QKSWILTFEGIDTVEQARPLVGSTLLA 164 (498)
Q Consensus 138 ~~~~ivkf~GId~re~Ae~L~G~~l~v 164 (498)
.+..|||++||+|+++|+-|.|..+..
T Consensus 38 ~~~aLlKieGV~~~~~a~fYlGKrvay 64 (120)
T PTZ00041 38 PNVALLKIEGVNTREDARFYLGKRVAY 64 (120)
T ss_pred CceEEEEecCcCChhhhHhhccceEEE
Confidence 568999999999999999999998754
No 49
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=78.93 E-value=2.4 Score=44.77 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=30.5
Q ss_pred cCcEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHH
Q 010869 404 EGKKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 404 ~GkVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~ 445 (498)
++.+..|+||||+++|.|-++--++. .++++++...+++.
T Consensus 158 ~~~i~~IILAGGkSsRMG~dKaLL~~--~GkpLl~~~ie~l~ 197 (346)
T PRK14500 158 QTPLYGLVLTGGKSRRMGKDKALLNY--QGQPHAQYLYDLLA 197 (346)
T ss_pred CCCceEEEEeccccccCCCCccccee--CCccHHHHHHHHHH
Confidence 34788999999999999966433444 37999998887654
No 50
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=78.40 E-value=6.9 Score=40.00 Aligned_cols=75 Identities=5% Similarity=0.059 Sum_probs=46.0
Q ss_pred EEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCCc
Q 010869 409 MVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (498)
Q Consensus 409 vlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFG 484 (498)
+|+||||.|+|+.- . |+.+ .|..+|.+....-+ .|+..|- =..+|+|.+...+..+++|.+...||
T Consensus 2 aIILAgG~GtRL~plT~~~pK~L-lpv~gkPmI~~~L~------~l~~aGi---~~I~iv~~~~~~~~~~~~lg~g~~~g 71 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQL-LPIYDKPMIYYPLS------TLMLAGI---RDILIISTPQDTPRFQQLLGDGSQWG 71 (286)
T ss_pred EEEECCCCCccCCcccCCCCcee-eEECCEEhHHHHHH------HHHHCCC---CEEEEEecCCcHHHHHHHhccccccC
Confidence 47789999999843 1 3211 13346777766655 3332221 13456676667778889998877888
Q ss_pred cCCCcEEEEecC
Q 010869 485 FDSKKVSNISES 496 (498)
Q Consensus 485 L~~~qV~fF~Q~ 496 (498)
++ +.+..|.
T Consensus 72 ~~---i~~~~q~ 80 (286)
T TIGR01207 72 VN---LSYAVQP 80 (286)
T ss_pred ce---EEEEEcc
Confidence 73 5555553
No 51
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=77.79 E-value=2.7 Score=38.55 Aligned_cols=38 Identities=5% Similarity=-0.092 Sum_probs=27.1
Q ss_pred EEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHH
Q 010869 407 KAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSD 446 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~ 446 (498)
+++|+||||.|+|.|-+.--++. .|+++++...+++..
T Consensus 1 ~~~vIlAgG~s~R~g~~K~l~~~--~g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGGNKLLLPL--DGKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCCCceeCee--CCeeHHHHHHHHHHh
Confidence 46899999999999864211232 479999888886543
No 52
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=77.10 E-value=9.8 Score=36.60 Aligned_cols=76 Identities=7% Similarity=-0.038 Sum_probs=45.7
Q ss_pred EEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCCc
Q 010869 409 MVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (498)
Q Consensus 409 vlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFG 484 (498)
+|+||||.|+|++= . |+.+ .|..++.+.+..-+ .|++.|-+ -.+|.|.. ..+..+++|.+...++
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~l-lpi~g~piI~~~l~------~l~~~Gi~---~I~iv~~~-~~~~i~~~l~~~~~~~ 71 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRCL-LPLANVPLIDYTLE------FLALNGVE---EVFVFCCS-HSDQIKEYIEKSKWSK 71 (217)
T ss_pred EEEEcCCCcccccccccCCCcee-eEECCEehHHHHHH------HHHHCCCC---eEEEEeCC-CHHHHHHHHhhccccc
Confidence 57889999999852 1 4321 23456777777666 44432311 23667764 6678999998876666
Q ss_pred cCC--CcEEEEec
Q 010869 485 FDS--KKVSNISE 495 (498)
Q Consensus 485 L~~--~qV~fF~Q 495 (498)
++. -.+.+..|
T Consensus 72 ~~~~~~~i~~~~~ 84 (217)
T cd04197 72 PKSSLMIVIIIMS 84 (217)
T ss_pred cccCcceEEEEeC
Confidence 553 23454444
No 53
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=74.94 E-value=3.5 Score=38.82 Aligned_cols=39 Identities=5% Similarity=-0.094 Sum_probs=27.9
Q ss_pred CcEEEEEecCCCCCCCcccCCC-CcccCCCcchHHHHHHHHH
Q 010869 405 GKKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLS 445 (498)
Q Consensus 405 GkVavlLlAGGqg~rlG~~p~~-l~s~~~~kslfql~aerI~ 445 (498)
.++.+|+||||.|+|.|-.++. ++. .|+++++...+++.
T Consensus 2 ~~~~~vILA~G~s~Rm~~~~K~ll~~--~g~~ll~~~i~~l~ 41 (193)
T PRK00317 2 PPITGVILAGGRSRRMGGVDKGLQEL--NGKPLIQHVIERLA 41 (193)
T ss_pred CCceEEEEcCCCcccCCCCCCceeEE--CCEEHHHHHHHHHh
Confidence 3688999999999998533322 232 47999988888654
No 54
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=74.62 E-value=3.1 Score=36.15 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=37.7
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEEE-eCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEe
Q 010869 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (498)
Q Consensus 138 ~~~~ivkf~GId~re~Ae~L~G~~l~v-~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~ 215 (498)
.+..|||++||+|+++|+-|.|..+.. .+..-. .. ....-...|+|+....+.. +...+.
T Consensus 19 ~~~aLlKiegV~~~~~a~fylGKrv~yvyk~~~~-~~---------------~~k~r~iwGkV~r~HGnsG--vVrAkF 79 (95)
T PF01247_consen 19 PNTALLKIEGVNTKEDAQFYLGKRVAYVYKAKNK-KN---------------GSKGRVIWGKVTRPHGNSG--VVRAKF 79 (95)
T ss_dssp EEEEEEEESS-STCHHHHTTTT-EEEEEECE-SS-ST---------------TECSEEEEEEEEEESTTTT--EEEEEE
T ss_pred CCeeEEeecCccCHHHHHhhcCcEEEEEEecccc-cC---------------CCcEeEEEEEEEeEEcCCC--EEEEEe
Confidence 357899999999999999999998754 443321 11 1111246899999875543 544554
No 55
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=74.38 E-value=9.3 Score=36.22 Aligned_cols=67 Identities=3% Similarity=-0.004 Sum_probs=42.7
Q ss_pred EEEecCCCCCCCcc----cCCCCcccCCCc-chHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCC
Q 010869 409 MVLVVHNSEEGNEC----DPHSVVSESTAN-KSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (498)
Q Consensus 409 vlLlAGGqg~rlG~----~p~~l~s~~~~k-slfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yF 483 (498)
+|+||||.|+|+.= .|+.+ .|..++ ++++...+.+.+ .|- =..+|+|+.. .+..+++|.+..-|
T Consensus 1 avILAaG~gtRl~plt~~~pK~l-lpv~g~~pli~~~l~~l~~------~gi---~~iivv~~~~-~~~i~~~~~~~~~~ 69 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPA-VPFGGRYRLIDFPLSNMVN------SGI---RNVGVLTQYK-SRSLNDHLGSGKEW 69 (200)
T ss_pred CEEeCCCCCcccchhhcCCccee-eEECCeeeeHHHHHHHHHH------CCC---CEEEEEeCCC-hHHHHHHHhCCCcc
Confidence 37899999999841 24321 123456 787777664432 221 2346777755 67888899877678
Q ss_pred ccC
Q 010869 484 AFD 486 (498)
Q Consensus 484 GL~ 486 (498)
|++
T Consensus 70 ~~~ 72 (200)
T cd02508 70 DLD 72 (200)
T ss_pred cCC
Confidence 876
No 56
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=73.42 E-value=4.1 Score=38.26 Aligned_cols=35 Identities=0% Similarity=-0.156 Sum_probs=25.1
Q ss_pred EEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHH
Q 010869 408 AMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLL 444 (498)
Q Consensus 408 avlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI 444 (498)
++|+||||.|+|.|.++.-++. .|+++++...+.+
T Consensus 2 ~~vILAgG~s~Rmg~~K~ll~~--~g~~ll~~~i~~~ 36 (190)
T TIGR03202 2 VAIYLAAGQSRRMGENKLALPL--GETTLGSASLKTA 36 (190)
T ss_pred eEEEEcCCccccCCCCceecee--CCccHHHHHHHHH
Confidence 4688999999999976422333 3689888876643
No 57
>PRK13149 H/ACA RNA-protein complex component Gar1; Reviewed
Probab=72.74 E-value=14 Score=30.28 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=28.6
Q ss_pred CCcEEEecCCCeEeEEEEEeccCCCceEEEEEee
Q 010869 183 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMCY 216 (498)
Q Consensus 183 IGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~ 216 (498)
+|-.|+| ++++.+|+|.||+..=.+..+.|+..
T Consensus 26 ~n~~V~~-~~~~~IGkV~dIfGPV~~pY~~Vk~~ 58 (73)
T PRK13149 26 IGSVVYD-KKLKKIGKVVDVFGPVKEPYVLVKPD 58 (73)
T ss_pred CCCEeEC-CCCCEeEEEEEEECCCCCcEEEEEeC
Confidence 4778997 78899999999999888888999874
No 58
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=72.68 E-value=3.4 Score=43.67 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=31.6
Q ss_pred hhhhccCcEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHH
Q 010869 399 NHLVSEGKKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 399 l~~Is~GkVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~ 445 (498)
...+.+-++++|+||||+++|.|.+.--++. .|+++++...+++.
T Consensus 167 ~~~~~~~~i~~iILAGG~SsRmG~~K~ll~~--~Gk~ll~~~l~~l~ 211 (369)
T PRK14490 167 LGRAEEVPLSGLVLAGGRSSRMGSDKALLSY--HESNQLVHTAALLR 211 (369)
T ss_pred hcccccCCceEEEEcCCccccCCCCcEEEEE--CCccHHHHHHHHHH
Confidence 3334334678999999999999976422333 36999988877664
No 59
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=72.62 E-value=16 Score=37.96 Aligned_cols=67 Identities=6% Similarity=0.092 Sum_probs=43.7
Q ss_pred EEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCCc
Q 010869 409 MVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (498)
Q Consensus 409 vlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFG 484 (498)
+|+||||.|+|++- + |+.+ .|..++++++...+. |++.+ .=..+|+|+....+..+++|.+...||
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l-~pv~g~pli~~~l~~------l~~~g---i~~i~vv~~~~~~~~i~~~~~~~~~~~ 71 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQL-IPVANKPILQYAIED------LAEAG---ITDIGIVVGPVTGEEIKEIVGEGERFG 71 (353)
T ss_pred EEEECCcCcCccCccccCCCccc-cEECCEeHHHHHHHH------HHHCC---CCEEEEEeCCCCHHHHHHHHhcccccC
Confidence 47788999999853 2 4321 133467887776663 33222 124577888768889999998866677
Q ss_pred c
Q 010869 485 F 485 (498)
Q Consensus 485 L 485 (498)
+
T Consensus 72 ~ 72 (353)
T TIGR01208 72 A 72 (353)
T ss_pred c
Confidence 5
No 60
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=72.38 E-value=3.8 Score=39.32 Aligned_cols=38 Identities=5% Similarity=-0.025 Sum_probs=28.3
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~ 445 (498)
++++|+||||+|+|.|.+.--++. .++++++...+++.
T Consensus 7 ~~~~vILAgG~s~Rmg~~K~ll~~--~g~~ll~~~i~~l~ 44 (200)
T PRK02726 7 NLVALILAGGKSSRMGQDKALLPW--QGVPLLQRVARIAA 44 (200)
T ss_pred CceEEEEcCCCcccCCCCceeeEE--CCEeHHHHHHHHHH
Confidence 678999999999999876322333 36898888877653
No 61
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=71.38 E-value=4.4 Score=37.66 Aligned_cols=38 Identities=11% Similarity=0.040 Sum_probs=26.6
Q ss_pred EEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHH
Q 010869 407 KAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~ 445 (498)
+++|+||||.|+|.|-.|+.+- +..|+++++...+++.
T Consensus 1 ~~~iILAgG~s~Rmg~~~K~l~-~i~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGGRDKGLV-ELGGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCCCCCcee-EECCEEHHHHHHHHHH
Confidence 4689999999999974233221 2347899888888654
No 62
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=71.19 E-value=15 Score=37.87 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=40.0
Q ss_pred cEEEEEecCCCCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 406 KKAMVLVVHNSEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
.+-+|+||||.|||+.-- |+-+ .|..++.+.+..-+ .|+..|-+ -.+|+|. +..+..++||..
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpL-vpV~gkPiI~~vl~------~l~~~Gi~---~ivivv~-~~~~~i~~~~~~ 69 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEM-LPIVDKPMIQYIVD------EIVAAGIK---EIVLVTH-ASKNAVENHFDT 69 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCcee-eEECCEEHHHHHHH------HHHHCCCC---EEEEEec-CChHHHHHHHhc
Confidence 467889999999998521 3211 23557888777766 44432311 2356665 477789999965
No 63
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=71.01 E-value=15 Score=35.74 Aligned_cols=69 Identities=4% Similarity=0.044 Sum_probs=41.4
Q ss_pred EEEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCC
Q 010869 408 AMVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (498)
Q Consensus 408 avlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yF 483 (498)
-+|+||||.|+|++- . |+.+ .|..++.++....+. ++..|- =..+|+|.....+..++++.+...+
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~l-lpv~~~pli~~~l~~------l~~~gi---~~i~vv~~~~~~~~~~~~l~~~~~~ 71 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQL-LPVYDKPMIYYPLST------LMLAGI---REILIISTPEDLPLFKELLGDGSDL 71 (240)
T ss_pred eEEEEcCcCcccCCccccCCCcee-eEECCEEhHHHHHHH------HHHCCC---CEEEEEeCcchHHHHHHHHhccccc
Confidence 368899999999853 1 4321 123467777666553 332221 1345667665556778888776666
Q ss_pred ccC
Q 010869 484 AFD 486 (498)
Q Consensus 484 GL~ 486 (498)
|++
T Consensus 72 ~~~ 74 (240)
T cd02538 72 GIR 74 (240)
T ss_pred Cce
Confidence 643
No 64
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=70.99 E-value=7.3 Score=37.72 Aligned_cols=74 Identities=9% Similarity=0.157 Sum_probs=44.5
Q ss_pred EEecCCCCCCCcc---c-CCCCcccCCCc-chHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCCc
Q 010869 410 VLVVHNSEEGNEC---D-PHSVVSESTAN-KSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (498)
Q Consensus 410 lLlAGGqg~rlG~---~-p~~l~s~~~~k-slfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFG 484 (498)
|+||||.|+|+.= + |..+ .|..++ ++++..-+. |+..|-+. .|+++.+...+...++|.+...+|
T Consensus 3 vIla~G~GtRl~plt~~~pK~l-l~i~g~~pli~~~l~~------l~~~g~~~---ii~V~~~~~~~~i~~~~~~~~~~~ 72 (248)
T PF00483_consen 3 VILAGGKGTRLRPLTDTIPKPL-LPIGGKYPLIDYVLEN------LANAGIKE---IIVVVNGYKEEQIEEHLGSGYKFG 72 (248)
T ss_dssp EEEEESCCGGGTTTTTTSSGGG-SEETTEEEHHHHHHHH------HHHTTCSE---EEEEEETTTHHHHHHHHTTSGGGT
T ss_pred EEECCCCCccCchhhhcccccc-ceecCCCcchhhhhhh------hcccCCce---EEEEEeeccccccccccccccccc
Confidence 4558999999842 2 3211 123356 777776663 33323221 256666667788999999877677
Q ss_pred cCCCcEEEEecC
Q 010869 485 FDSKKVSNISES 496 (498)
Q Consensus 485 L~~~qV~fF~Q~ 496 (498)
-+|.+..|.
T Consensus 73 ---~~i~~i~~~ 81 (248)
T PF00483_consen 73 ---VKIEYIVQP 81 (248)
T ss_dssp ---EEEEEEEES
T ss_pred ---ccceeeecc
Confidence 345555554
No 65
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=70.15 E-value=15 Score=40.52 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=43.5
Q ss_pred cEEEEEecCCCCCCCc-cc----CCCC-cccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 406 KKAMVLVVHNSEEGNE-CD----PHSV-VSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 406 kVavlLlAGGqg~rlG-~~----p~~l-~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
++-+|+||||.|+|+- .+ |+-+ +. .+++|++|.-.+|+.++ + +.=++ |+|+......+++-+.+
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l-~~~~sllq~t~~r~~~~------~--~~~~i-ivt~~~~~~~v~~ql~~ 74 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCL-KGDLTMLQTTICRLNGV------E--CESPV-VICNEQHRFIVAEQLRQ 74 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeEC-CCCCCHHHHHHHHHHhC------C--CCCcE-EEeCHHHHHHHHHHHHh
Confidence 4677899999999983 22 3221 21 23479999888865432 1 11234 67998888888888876
Q ss_pred CCC
Q 010869 480 NDH 482 (498)
Q Consensus 480 n~y 482 (498)
.++
T Consensus 75 ~~~ 77 (478)
T PRK15460 75 LNK 77 (478)
T ss_pred cCC
Confidence 443
No 66
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=69.78 E-value=4.3 Score=37.51 Aligned_cols=37 Identities=11% Similarity=-0.008 Sum_probs=26.5
Q ss_pred EEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHH
Q 010869 408 AMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSD 446 (498)
Q Consensus 408 avlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~ 446 (498)
++|+||||+|+|.|-+.--++ ..++++++...+++.+
T Consensus 2 ~~iILAgG~s~Rmg~~K~ll~--~~g~~ll~~~i~~l~~ 38 (181)
T cd02503 2 TGVILAGGKSRRMGGDKALLE--LGGKPLLEHVLERLKP 38 (181)
T ss_pred cEEEECCCccccCCCCceeeE--ECCEEHHHHHHHHHHh
Confidence 578999999999986431133 2468999888886653
No 67
>KOG0887 consensus 60S ribosomal protein L35A/L37 [Translation, ribosomal structure and biogenesis]
Probab=68.99 E-value=6 Score=34.91 Aligned_cols=51 Identities=22% Similarity=0.386 Sum_probs=37.6
Q ss_pred ceEEEEecCCCCHHHHhcccCCe-EEEeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccC
Q 010869 139 KSWILTFEGIDTVEQARPLVGST-LLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNS 205 (498)
Q Consensus 139 ~~~ivkf~GId~re~Ae~L~G~~-l~v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ 205 (498)
...|||++||+++|+|+-+.|.. +||-++. |+-. |-... -..|+|+-...+
T Consensus 30 ~t~llkIEGv~skeEa~fYlGkR~~yvYKa~-~~~~----------~~k~R-----vIWGkVTr~HGN 81 (111)
T KOG0887|consen 30 NTSLLKIEGVYSKEEASFYLGKRCVYVYKAK-PEVR----------GSKTR-----VIWGKVTRPHGN 81 (111)
T ss_pred CcEEEEEecccchhhhheeecCcEEEEEecC-CCCC----------CceEE-----EEEEEEecccCC
Confidence 56899999999999999999999 7887776 3222 22222 257888887643
No 68
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=68.54 E-value=14 Score=40.20 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=40.3
Q ss_pred cEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 406 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
.+++|+||||.|+|++-+ |+.+ .|..++++++...+++.+. + .-.++|.++.. .+..+++|.+
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~l-lpi~gkpli~~~l~~l~~~------g---~~~iivvv~~~-~~~i~~~~~~ 67 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVL-HTLAGRSMLGHVLHAAAGL------A---PQHLVVVVGHD-RERVAPAVAE 67 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCcee-ceeCCccHHHHHHHHHHhc------C---CCcEEEEECCC-HHHHHHHhhc
Confidence 578899999999999854 5322 2234789888887755421 1 22566666653 4556666653
No 69
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=68.25 E-value=15 Score=35.00 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=35.3
Q ss_pred EEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 409 MVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 409 vlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
+|+||||.|+|++-. |+.+- |..++++++...+.+.+ .+ .-..+|.|+.. .+..++++.+
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~-~v~gkpli~~~i~~l~~------~~---i~~i~iv~~~~-~~~i~~~~~~ 61 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLH-PLAGKPMLEHVLDAARA------LG---PDRIVVVVGHG-AEQVKKALAN 61 (229)
T ss_pred CEEEeCCCCccCCCCCChhcc-eeCCccHHHHHHHHHHh------CC---CCeEEEEECCC-HHHHHHHhCC
Confidence 478889999998743 43321 23468888776664432 11 12345555544 5666666654
No 70
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=68.20 E-value=14 Score=40.41 Aligned_cols=61 Identities=10% Similarity=-0.019 Sum_probs=34.7
Q ss_pred EEEecCCCCCCCc----c-cCCC-CcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 409 MVLVVHNSEEGNE----C-DPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 409 vlLlAGGqg~rlG----~-~p~~-l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
+|+||||+|+|++ . .|+- ++. ..+++++|.-.+|+.++ + +. .-+|.|+.......++.+.+
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~~l~l-~g~~~ll~~tl~~l~~~------~--~~-~iviv~~~~~~~~~~~~l~~ 69 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQFLAL-VGDLTMLQQTLKRLAGL------P--CS-SPLVICNEEHRFIVAEQLRE 69 (468)
T ss_pred EEEecCcccccCCccccCCCCCceeEc-CCCCcHHHHHHHHHhcC------C--Cc-CcEEecCHHHHHHHHHHHHH
Confidence 5889999999996 2 2432 222 12379888877755432 1 11 22366765544444555543
No 71
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=68.11 E-value=12 Score=35.29 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=37.3
Q ss_pred EEEecCCCCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccc-eEEEeCCccchHHHHHhhHhCCCC
Q 010869 409 MVLVVHNSEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASM-PLVLVLPALEMQMLEKLFLDNDHF 483 (498)
Q Consensus 409 vlLlAGGqg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~I-PwyIMTS~~T~~~T~~fF~~n~yF 483 (498)
+|+||||.|+|++-. |+.+ .|..+++++....+.+. +.+ + ..+|.|+ ...+.+++++.+...+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~l-l~i~g~pli~~~l~~l~------~~g----~~~v~vv~~-~~~~~i~~~~~~~~~~ 68 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPL-APVAGRPFLEYLLEYLA------RQG----ISRIVLSVG-YLAEQIEEYFGDGYRG 68 (223)
T ss_pred CEEecCCcccccCcccCCCCccc-cEECCcchHHHHHHHHH------HCC----CCEEEEEcc-cCHHHHHHHHcCcccc
Confidence 467889999998631 4332 12346888777766433 211 2 2455554 4566778888754334
Q ss_pred c
Q 010869 484 A 484 (498)
Q Consensus 484 G 484 (498)
|
T Consensus 69 ~ 69 (223)
T cd06915 69 G 69 (223)
T ss_pred C
Confidence 4
No 72
>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=67.97 E-value=16 Score=31.95 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=27.4
Q ss_pred CCcEEEecCCCeEeEEEEEeccCCCceEEEEEe
Q 010869 183 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (498)
Q Consensus 183 IGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~ 215 (498)
+|..|+| .+++.+|+|.|||..=.+..+.|+.
T Consensus 27 l~~~V~~-~~~k~IG~V~dVfGPv~~PY~~Vkp 58 (98)
T COG3277 27 LNAPVYD-ANLKRIGKVVDVFGPVDEPYILVKP 58 (98)
T ss_pred CCCeeEe-cCCCEEEEEEEEEccCCCCEEEEec
Confidence 3889997 6788899999999888888888886
No 73
>PF09939 DUF2171: Uncharacterized protein conserved in bacteria (DUF2171); InterPro: IPR018684 This family of various hypothetical prokaryotic proteins has no known function.
Probab=67.81 E-value=27 Score=28.53 Aligned_cols=57 Identities=30% Similarity=0.409 Sum_probs=38.6
Q ss_pred CCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcCCCCCcEEEEecccCccceeeCCCCEEEEe
Q 010869 183 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQIT 262 (498)
Q Consensus 183 IGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V~~VDle~~~I~V~ 262 (498)
-+|+|+. .+|..+|+|..+. | |-+.... .++...+...+||.- +|.+|| +..+++.
T Consensus 4 ehmeVi~-sdG~~vGtVDhve--G--d~IKLtk---------------~d~~~~g~HH~IPls--~V~~Vd--~~~V~L~ 59 (67)
T PF09939_consen 4 EHMEVIG-SDGVHVGTVDHVE--G--DRIKLTK---------------DDSGHDGQHHYIPLS--WVDSVD--DDKVHLS 59 (67)
T ss_pred CCCEEEe-CCCCEEEEEeeEe--C--CEEEEec---------------cCCCCCCcceEEehh--HheeEc--CCEEEEc
Confidence 3799996 6899999999996 3 3333322 112246889999986 677776 5566665
Q ss_pred C
Q 010869 263 P 263 (498)
Q Consensus 263 ~ 263 (498)
-
T Consensus 60 ~ 60 (67)
T PF09939_consen 60 K 60 (67)
T ss_pred C
Confidence 4
No 74
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=67.78 E-value=5.8 Score=36.66 Aligned_cols=35 Identities=3% Similarity=-0.091 Sum_probs=24.8
Q ss_pred EEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHH
Q 010869 409 MVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 409 vlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~ 445 (498)
+|+||||.|+|.|.+..-++. .|+++++...+.+.
T Consensus 2 ~iIla~G~s~R~g~~K~ll~~--~g~pll~~~i~~l~ 36 (188)
T TIGR03310 2 AIILAAGLSSRMGQNKLLLPY--KGKTILEHVVDNAL 36 (188)
T ss_pred eEEECCCCcccCCCCceeccc--CCeeHHHHHHHHHH
Confidence 688999999999854322333 47898888777554
No 75
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=66.73 E-value=6.4 Score=37.63 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=26.4
Q ss_pred EEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHH
Q 010869 408 AMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSD 446 (498)
Q Consensus 408 avlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~ 446 (498)
++|+||||.|+|.|.+ |+.+ .+..|+++++...+++.+
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l-~~l~gkpll~~~l~~l~~ 39 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQY-LELGGRPLLEHTLDAFLA 39 (217)
T ss_pred CEEEEcCcccccCCCCCCccE-eEECCeEHHHHHHHHHhc
Confidence 3689999999999854 4322 123479998888776543
No 76
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=66.10 E-value=6.7 Score=37.89 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=27.6
Q ss_pred cEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
++++|+||||.|+|.|.. |+.+ .+..|+++++...+.+.
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l-~~~~g~pli~~~l~~l~ 42 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQY-LPLGGKPILEHTLEAFL 42 (227)
T ss_pred ceEEEEEcCccccccCCCCCcee-eEECCEEHHHHHHHHHH
Confidence 578899999999999753 4322 12347899888877554
No 77
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=65.69 E-value=7.9 Score=41.55 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=28.3
Q ss_pred cEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
.+++|+||||.|+|++.+ |+.+ .|..+|++++...+++.
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l-~~i~gkpli~~~l~~l~ 44 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVL-QTLLGEPMLRFVYRALR 44 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCcee-cccCCCcHHHHHHHHHH
Confidence 578899999999999854 5322 12347999988877554
No 78
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=65.61 E-value=5.9 Score=37.68 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=26.6
Q ss_pred EEEEEecCCCCCCCcc-cCCCCcccCCCcchHHHHHHHHH
Q 010869 407 KAMVLVVHNSEEGNEC-DPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 407 VavlLlAGGqg~rlG~-~p~~l~s~~~~kslfql~aerI~ 445 (498)
|++|+||||.|+|.|- .|+.+ .+..|+++++...+++.
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l-~~i~Gkpll~~~i~~l~ 39 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQF-LELGGKPVLEHTLEAFL 39 (218)
T ss_pred CEEEEECCcccccCCCCCCcce-eEECCeEHHHHHHHHHh
Confidence 5678999999999986 23321 12247999888877554
No 79
>COG1588 POP4 RNase P/RNase MRP subunit p29 [Translation, ribosomal structure and biogenesis]
Probab=64.97 E-value=31 Score=30.02 Aligned_cols=80 Identities=21% Similarity=0.232 Sum_probs=46.6
Q ss_pred CccchhccCCcEEEec--CCCeEe---EEEEEeccCCCceEEEEEeecccccccCccccccCcCCCCCcEEEEecccCcc
Q 010869 175 GEFYTRDLVGMRVVMK--ETGELV---GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249 (498)
Q Consensus 175 dEfY~~DLIGl~V~d~--~~G~~L---G~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V 249 (498)
-..|+++|||+.|.-- .+-..+ |.|++- . ...|+|.+ +.++..||---.+
T Consensus 8 ~~i~~hEliGl~vrVv~s~~~s~vGI~G~VVdE---T-kNtLvi~t--------------------~~~~~~VpK~~~v- 62 (95)
T COG1588 8 RNIIRHELIGLEVRVVRSTNPSYVGIEGRVVDE---T-KNTLVIDT--------------------GSREKVVPKDGAV- 62 (95)
T ss_pred CCcChHHhcCcEEEEEecCCCCccceeEEEEee---e-ccEEEEEC--------------------CCceEEEecCcEE-
Confidence 3689999999988642 122234 555543 3 34567776 2367777754433
Q ss_pred ceeeCCCCEEEEeCCCCcccccCCcchhhHHHH
Q 010869 250 PIVDMNGREMQITPPKGLLELNLRTDERSKKER 282 (498)
Q Consensus 250 ~~VDle~~~I~V~~peGLLeL~~~~~~~~k~~~ 282 (498)
=.++...++. |..+-.+ |+.+.++|.||..
T Consensus 63 fef~~~~G~~-vkVdG~l--L~~rPE~Rlk~~~ 92 (95)
T COG1588 63 FEFEGPDGEK-VKVDGRL--LLGRPEDRLKKRW 92 (95)
T ss_pred EEEEcCCCcE-EEEcchh--hhcCHHHHHhhhh
Confidence 2566654433 2333344 3568899999744
No 80
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=64.28 E-value=8 Score=41.36 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=27.5
Q ss_pred cEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
++++|+||||.|+|.|.. |+-+ .+..++++++.-.+++.
T Consensus 5 ~v~aIILAAG~GsRmg~~~pKql-l~l~GkPll~~tl~~l~ 44 (378)
T PRK09382 5 DISLVIVAAGRSTRFSAEVKKQW-LRIGGKPLWLHVLENLS 44 (378)
T ss_pred cceEEEECCCCCccCCCCCCeeE-EEECCeeHHHHHHHHHh
Confidence 578999999999998754 4321 12347898887777544
No 81
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=62.38 E-value=9 Score=32.78 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.9
Q ss_pred eEEEEEEeeeeeeeeeEEEEeccCCcc
Q 010869 77 FVDVGYVYSVHGLQGEISVKPSTDFPE 103 (498)
Q Consensus 77 ~v~IG~I~~~HGlkGevkV~~~tD~pe 103 (498)
.+..|+|.++||-.|.|+.+.....|-
T Consensus 51 rviwGKItR~HGnsGvVrAkF~~nLP~ 77 (87)
T PRK04337 51 NKYVGKIVRVHGNRGEVRARFKPGLPG 77 (87)
T ss_pred CEEEEEEEeeeCCCceEEEEECCCCCh
Confidence 588999999999999999998777665
No 82
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=62.14 E-value=29 Score=32.86 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=35.9
Q ss_pred EEEecCCCCCCCcc----cCCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCCc
Q 010869 409 MVLVVHNSEEGNEC----DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (498)
Q Consensus 409 vlLlAGGqg~rlG~----~p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFG 484 (498)
+|+||||.|+|++= .|+.+ .|..++++++...+.+ +..+-+ -.+|+|+. ..+..++++.+..-+|
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~l-l~~~g~pli~~~l~~l------~~~~~~---~iivv~~~-~~~~i~~~~~~~~~~~ 69 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPM-LKVGGKPILETIIDRF------IAQGFR---NFYISVNY-LAEMIEDYFGDGSKFG 69 (220)
T ss_pred CEEecCCCccccCcccCCCCCcc-CeECCcchHHHHHHHH------HHCCCc---EEEEECcc-CHHHHHHHHCCccccC
Confidence 57899999999852 13322 1234678777766643 322211 23455554 3556667766543344
No 83
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=61.95 E-value=7 Score=35.28 Aligned_cols=36 Identities=6% Similarity=-0.007 Sum_probs=24.9
Q ss_pred EEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHH
Q 010869 409 MVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSD 446 (498)
Q Consensus 409 vlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~ 446 (498)
+|+||||.|+|.|-++--++ ..|+++++...+.+.+
T Consensus 1 ~vILa~G~s~Rmg~~K~l~~--i~g~~li~~~l~~l~~ 36 (160)
T PF12804_consen 1 AVILAAGKSSRMGGPKALLP--IGGKPLIERVLEALRE 36 (160)
T ss_dssp EEEEESSSCGGGTSCGGGSE--ETTEEHHHHHHHHHHH
T ss_pred CEEECCcCcccCCCCcccee--ECCccHHHHHHHHhhc
Confidence 57889999999986421123 3479988887775543
No 84
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=61.83 E-value=17 Score=38.88 Aligned_cols=38 Identities=5% Similarity=0.045 Sum_probs=26.3
Q ss_pred EEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 407 KAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
+++|+||||.|+|++.. |+.+ .|..++++++...+++.
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~l-l~v~gkpli~~~l~~l~ 40 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVL-HPLGGKSLVERVLDSCE 40 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhc-CEECChhHHHHHHHHHH
Confidence 67899999999999854 4321 22346888877777543
No 85
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=61.62 E-value=28 Score=32.64 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=41.9
Q ss_pred EEEecCCCCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCCc
Q 010869 409 MVLVVHNSEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (498)
Q Consensus 409 vlLlAGGqg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFG 484 (498)
+|+||||.|+|++-- |+.+ .|..++++++...+.+.+ .+ .=..+|+|.. ..+..++++.+...+|
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~l-l~v~g~pli~~~l~~l~~------~g---~~~i~vv~~~-~~~~i~~~~~~~~~~~ 69 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPL-LPIAGKPILEYIIERLAR------AG---IDEIILVVGY-LGEQIEEYFGDGSKFG 69 (217)
T ss_pred CEEecCCccccccccccCCCccc-cEECCeeHHHHHHHHHHH------CC---CCEEEEEecc-CHHHHHHHHcChhhcC
Confidence 377889999998631 3321 123468888777774432 12 1123566665 4567777777655455
Q ss_pred cCCCcEEEEec
Q 010869 485 FDSKKVSNISE 495 (498)
Q Consensus 485 L~~~qV~fF~Q 495 (498)
+ +|.+..|
T Consensus 70 ~---~i~~~~~ 77 (217)
T cd04181 70 V---NIEYVVQ 77 (217)
T ss_pred c---eEEEEeC
Confidence 3 3444444
No 86
>PRK10122 GalU regulator GalF; Provisional
Probab=61.36 E-value=36 Score=34.96 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=39.8
Q ss_pred cEEEEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhH
Q 010869 406 KKAMVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~ 478 (498)
++.+|++|||.|||+.- . |+.+ .|..++.+.+...+ .++..|-+ -.+|+|. ...+...+||.
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~l-lpi~gkpiI~~~l~------~l~~~Gi~---~i~iv~~-~~~~~i~~~~~ 68 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEM-LPIVDKPMIQYIVD------EIVAAGIK---EIVLVTH-ASKNAVENHFD 68 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCcee-eEECCEEHHHHHHH------HHHHCCCC---EEEEEcC-CChHHHHHHHh
Confidence 57789999999999863 2 4321 23456887777666 44433322 2356664 57788999996
No 87
>COG3881 PRC-barrel domain containing protein [General function prediction only]
Probab=60.90 E-value=6 Score=37.42 Aligned_cols=68 Identities=25% Similarity=0.350 Sum_probs=43.6
Q ss_pred hhccCCcEEEecCCCeEeEEEEEeccCCCce-EEEEEeecccccccCccccccCcCCCCCcEEEEecccCccceeeCCCC
Q 010869 179 TRDLVGMRVVMKETGELVGTVVNVFNSGAND-LLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257 (498)
Q Consensus 179 ~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~D-lL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V~~VDle~~ 257 (498)
.++|+|..||+..+|+.||.|.||+-+...| ++-+..... .--.+.-++|+=. -+.+-.+
T Consensus 4 ~~EleG~pVys~~tg~~lg~V~Dvif~~~gdrvl~flvnkg---------------gwfh~h~~lp~~~----i~Sig~k 64 (176)
T COG3881 4 SRELEGAPVYSTKTGEKLGAVDDVIFNFSGDRVLGFLVNKG---------------GWFHKHCCLPVKN----IVSIGSK 64 (176)
T ss_pred chhhcCCceEEecccccccceeeEEEecCCCeEEEEEEecC---------------cEEeeeeeeeecc----eeeeccc
Confidence 3689999999988899999999996555444 554543100 0123577899754 2334455
Q ss_pred EEEEeCCC
Q 010869 258 EMQITPPK 265 (498)
Q Consensus 258 ~I~V~~pe 265 (498)
.|.+..|.
T Consensus 65 ~Imi~vp~ 72 (176)
T COG3881 65 MIMIYVPY 72 (176)
T ss_pred eEEEeccc
Confidence 56555554
No 88
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=58.95 E-value=11 Score=34.12 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=26.2
Q ss_pred eEEEEEEeeeeeeeeeEEEEeccCCcccccc
Q 010869 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFT 107 (498)
Q Consensus 77 ~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~ 107 (498)
.+..|+|.++||-.|.|+.+.....|--.+.
T Consensus 78 RviwGKVtR~HGnsGvVrAkF~~nLPp~A~G 108 (120)
T PTZ00041 78 RAIWGKITRPHGNSGVVRARFNKNLPPKAIG 108 (120)
T ss_pred eEEEEEEEcccCCCcEEEEEeCCCCChHHcC
Confidence 5789999999999999999988887763443
No 89
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=58.14 E-value=30 Score=36.88 Aligned_cols=65 Identities=6% Similarity=0.086 Sum_probs=39.6
Q ss_pred cCcEEEEEecCCCCCCCc---cc-CCCCcccCCCc-chHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhH
Q 010869 404 EGKKAMVLVVHNSEEGNE---CD-PHSVVSESTAN-KSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (498)
Q Consensus 404 ~GkVavlLlAGGqg~rlG---~~-p~~l~s~~~~k-slfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~ 478 (498)
.+++.+|+||||.|+|+. .+ |+.+ .|..++ .+.+..-+ .|+..|-+ .| +|+|. ...+...+||.
T Consensus 3 ~~~~~avILAaG~GtRl~PLT~~~PK~l-lPv~gk~plI~~~L~------~l~~~Gi~-~i--~iv~~-~~~~~i~~~~~ 71 (407)
T PRK00844 3 MPKVLAIVLAGGEGKRLMPLTADRAKPA-VPFGGSYRLIDFVLS------NLVNSGYL-RI--YVLTQ-YKSHSLDRHIS 71 (407)
T ss_pred CCceEEEEECCCCCCccchhhcCCcccc-eeeCCcceEhHHHHH------HHHHCCCC-EE--EEEec-cCHHHHHHHHH
Confidence 358899999999999986 33 4321 123355 56555544 45432211 12 45554 56788899997
Q ss_pred h
Q 010869 479 D 479 (498)
Q Consensus 479 ~ 479 (498)
+
T Consensus 72 ~ 72 (407)
T PRK00844 72 Q 72 (407)
T ss_pred h
Confidence 4
No 90
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=57.73 E-value=12 Score=39.73 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=27.5
Q ss_pred cEEEEEecCCCCCCCcccCCC-CcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~-l~s~~~~kslfql~aerI~ 445 (498)
++++|+||||+|+|.|..|+. ++. .++++++...+++.
T Consensus 5 ~i~~VILAgG~s~Rmgg~~K~ll~i--~Gkpll~~~i~~l~ 43 (366)
T PRK14489 5 QIAGVILAGGLSRRMNGRDKALILL--GGKPLIERVVDRLR 43 (366)
T ss_pred CceEEEEcCCcccCCCCCCCceeEE--CCeeHHHHHHHHHH
Confidence 789999999999999423322 232 47898888887654
No 91
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=56.19 E-value=11 Score=36.37 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=28.3
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSD 446 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~ 446 (498)
...+|+||||++.|. -++.-++. .|++++++..+|+..
T Consensus 4 ~~~~vILAGG~srRm-~dK~l~~~--~g~~lie~v~~~L~~ 41 (192)
T COG0746 4 PMTGVILAGGKSRRM-RDKALLPL--NGRPLIEHVIDRLRP 41 (192)
T ss_pred CceEEEecCCccccc-ccccccee--CCeEHHHHHHHHhcc
Confidence 567899999999998 44322333 369999999997754
No 92
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=56.03 E-value=22 Score=37.79 Aligned_cols=61 Identities=10% Similarity=0.138 Sum_probs=36.1
Q ss_pred EEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 408 AMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 408 avlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
-+|+||||.|+|++-+ |+.+ .|..++++++...+++.+ .+ .-..+|+++.. .+.+++++.+
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l-~~i~gkpli~~~l~~l~~------~g---~~~iiiv~~~~-~~~i~~~~~~ 63 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVL-HPLAGKPMLEHVIDAARA------LG---PQKIHVVYGHG-AEQVRKALAN 63 (451)
T ss_pred eEEEEcCCCCcccCCCCchhh-ceeCCccHHHHHHHHHHh------CC---CCeEEEEECCC-HHHHHHHhcC
Confidence 3688899999999864 4321 123468888877664432 11 12335566543 4556666654
No 93
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=55.83 E-value=48 Score=31.81 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=37.2
Q ss_pred EEEecCCCCCCCcc----cCCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhC
Q 010869 409 MVLVVHNSEEGNEC----DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (498)
Q Consensus 409 vlLlAGGqg~rlG~----~p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n 480 (498)
+|+||||.|+|++= .|+.+ .|..++.+++...+.+.+ .+- =-.+|+|.....+..++++++.
T Consensus 3 aVILAgG~g~R~~plt~~~pK~L-lpv~g~pli~~~l~~l~~------~g~---~~iivv~~~~~~~~i~~~l~~~ 68 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKAL-LPVANKPMIWYPLDWLEK------AGF---EDVIVVVPEEEQAEISTYLRSF 68 (214)
T ss_pred EEEEeCCCCCcCCccccCCCccc-CEECCeeHHHHHHHHHHH------CCC---CeEEEEECHHHHHHHHHHHHhc
Confidence 46689999999852 14321 233468888877664432 121 1345777765556677777653
No 94
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=55.51 E-value=18 Score=34.27 Aligned_cols=38 Identities=8% Similarity=-0.033 Sum_probs=27.2
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSD 446 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~ 446 (498)
|++++++|||.++|.+..+. ++ ..|+++++...+.+.+
T Consensus 1 ~~~~iIlA~G~s~R~~~K~l-~~--l~Gkpll~~~l~~l~~ 38 (223)
T cd02513 1 KILAIIPARGGSKGIPGKNI-RP--LGGKPLIAWTIEAALE 38 (223)
T ss_pred CeEEEEecCCCCCCCCCccc-ch--hCCccHHHHHHHHHHh
Confidence 57889999999999863221 22 2479999888886653
No 95
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=55.38 E-value=44 Score=35.34 Aligned_cols=68 Identities=9% Similarity=0.096 Sum_probs=43.5
Q ss_pred EEEEEecCCCCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCC
Q 010869 407 KAMVLVVHNSEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDH 482 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~y 482 (498)
+-+++||||.|||+-=- |+-+ .|..+|.+...+.+.+ ++.| |-=+|++-+...+..++||.+...
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPl-lpI~gkPii~~~l~~L------~~~G----v~eivi~~~y~~~~i~~~~~d~~~ 70 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPL-LPIAGKPLIEYVLEAL------AAAG----VEEIVLVVGYLGEQIEEYFGDGEG 70 (358)
T ss_pred ceEEEEeCCccccccccccCCCccc-ceeCCccHHHHHHHHH------HHCC----CcEEEEEeccchHHHHHHHhcccc
Confidence 34678889999998332 3211 2345788887777744 3222 222344467777889999998877
Q ss_pred Ccc
Q 010869 483 FAF 485 (498)
Q Consensus 483 FGL 485 (498)
+|+
T Consensus 71 ~~~ 73 (358)
T COG1208 71 LGV 73 (358)
T ss_pred cCC
Confidence 774
No 96
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=54.25 E-value=17 Score=36.35 Aligned_cols=65 Identities=17% Similarity=0.073 Sum_probs=37.9
Q ss_pred CcEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhH
Q 010869 405 GKKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (498)
Q Consensus 405 GkVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~ 478 (498)
.++.+|++|+|+|+|.|.+ |+ .-.+..++.+|..--+ .+... ...=.-+|++++..+.-..++-.
T Consensus 3 ~~~~~vilAaG~G~R~~~~~pK-q~l~l~g~pll~~tl~------~f~~~--~~i~~Ivvv~~~~~~~~~~~~~~ 68 (230)
T COG1211 3 MMVSAVILAAGFGSRMGNPVPK-QYLELGGRPLLEHTLE------AFLES--PAIDEIVVVVSPEDDPYFEKLPK 68 (230)
T ss_pred ceEEEEEEcCccccccCCCCCc-eEEEECCEEehHHHHH------HHHhC--cCCCeEEEEEChhhhHHHHHhhh
Confidence 5788999999999999996 42 1112235666644333 33221 11113356666656666666654
No 97
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=53.90 E-value=16 Score=39.13 Aligned_cols=40 Identities=8% Similarity=0.089 Sum_probs=28.3
Q ss_pred CcEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 405 GKKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 405 GkVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
.++.+++||||.|+|++.+ |+.+ .|..++++++...+.+.
T Consensus 4 ~~~~aiILAaG~gsR~~~~~pK~l-l~v~gkpli~~~l~~l~ 44 (446)
T PRK14353 4 RTCLAIILAAGEGTRMKSSLPKVL-HPVAGRPMLAHVLAAAA 44 (446)
T ss_pred ccceEEEEcCCCCCccCCCCCccc-CEECCchHHHHHHHHHH
Confidence 3678899999999999854 5322 12347898888877553
No 98
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=51.77 E-value=36 Score=33.79 Aligned_cols=62 Identities=8% Similarity=0.061 Sum_probs=37.2
Q ss_pred EEEecCCCCCCCcc-c---CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCC
Q 010869 409 MVLVVHNSEEGNEC-D---PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 481 (498)
Q Consensus 409 vlLlAGGqg~rlG~-~---p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~ 481 (498)
+|++|||.|+|+.- . |+.+ .|..++.++...-+ .|+.. .|--+|+......+...++|.+..
T Consensus 2 avilaaG~gtRl~~~t~~~pK~l-lpv~g~pii~~~l~------~l~~~----gi~~i~iv~~~~~~~i~~~~~~~~ 67 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPM-VEIGGKPILWHIMK------IYSHH----GINDFIICCGYKGYVIKEYFANYF 67 (254)
T ss_pred EEEEcCccccccCccccCCCcce-eEECCEEHHHHHHH------HHHHC----CCCEEEEEcCCCHHHHHHHHHhhh
Confidence 46789999999843 2 3321 23446777655443 34322 244555555677888899997643
No 99
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=51.70 E-value=30 Score=37.89 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=37.9
Q ss_pred cEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhH
Q 010869 406 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~ 478 (498)
++.+|+||||.|+|++-. |+.+ .|..++.+++...+++.+ .+ .=..+|.|.. ..+..+++|.
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~l-lpi~gkpli~~~l~~l~~------~g---i~~ivvv~~~-~~~~i~~~~~ 69 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVL-HPVAGRPMVAWAVKAARD------LG---ARKIVVVTGH-GAEQVEAALQ 69 (481)
T ss_pred CceEEEECCCCCCcCCCCCCcee-cEECCeeHHHHHHHHHHh------CC---CCeEEEEeCC-CHHHHHHHhc
Confidence 578899999999999853 4322 233468888877664432 12 1134555554 3455666664
No 100
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=50.89 E-value=15 Score=32.02 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=24.1
Q ss_pred CCeEEEEEEeeeeeeeeeEEEEeccCCcc
Q 010869 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPE 103 (498)
Q Consensus 75 ~e~v~IG~I~~~HGlkGevkV~~~tD~pe 103 (498)
...+..|+|.++||-.|-|+++.....|-
T Consensus 57 k~r~iwGkV~r~HGnsGvVrAkF~~nLP~ 85 (95)
T PF01247_consen 57 KGRVIWGKVTRPHGNSGVVRAKFKKNLPP 85 (95)
T ss_dssp CSEEEEEEEEEESTTTTEEEEEESS--ST
T ss_pred cEeEEEEEEEeEEcCCCEEEEEeCCCCCh
Confidence 45689999999999999999998877775
No 101
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=45.56 E-value=35 Score=32.98 Aligned_cols=37 Identities=8% Similarity=0.094 Sum_probs=26.2
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~ 445 (498)
++.++++|+|.++|.+-.+ + .|..|+++++...+.+.
T Consensus 1 ~~~~iIlA~g~s~R~~~K~--l-~~i~gkpll~~~l~~l~ 37 (239)
T cd02517 1 KVIVVIPARYASSRLPGKP--L-ADIAGKPMIQHVYERAK 37 (239)
T ss_pred CEEEEEecCCCCCCCCCCC--C-cccCCcCHHHHHHHHHH
Confidence 4678999999999986222 1 12347999988888554
No 102
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=44.78 E-value=30 Score=35.74 Aligned_cols=75 Identities=11% Similarity=0.129 Sum_probs=45.1
Q ss_pred EEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCCc
Q 010869 409 MVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (498)
Q Consensus 409 vlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFG 484 (498)
.|.||||+||||-= . ++.| .|.-+|...+.--+ +|...|-+ =.+|++++.+....+.++-+-..||
T Consensus 3 giILAgG~GTRL~PlT~~~~KqL-lpV~~KPmi~y~l~------~L~~aGI~---dI~II~~~~~~~~~~~llGdgs~~g 72 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQL-LPVYDKPMIYYPLE------TLMLAGIR---DILIVVGPEDKPTFKELLGDGSDFG 72 (286)
T ss_pred cEEecCcCccccccccccCCccc-ceecCcchhHhHHH------HHHHcCCc---eEEEEecCCchhhhhhhhcCccccC
Confidence 36789999999721 1 2111 12234555555444 44433422 2357777778888888888889999
Q ss_pred cCCCcEEEEecC
Q 010869 485 FDSKKVSNISES 496 (498)
Q Consensus 485 L~~~qV~fF~Q~ 496 (498)
. ++.+-.|.
T Consensus 73 v---~itY~~Q~ 81 (286)
T COG1209 73 V---DITYAVQP 81 (286)
T ss_pred c---ceEEEecC
Confidence 6 45555554
No 103
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=44.33 E-value=34 Score=33.22 Aligned_cols=38 Identities=8% Similarity=-0.005 Sum_probs=26.9
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSD 446 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~ 446 (498)
+++++++|||.+.|.+-.+. ++ ..|+++++...+.+.+
T Consensus 2 ~~~~iIlA~g~S~R~~~K~L-l~--i~Gkpll~~~l~~l~~ 39 (245)
T PRK05450 2 KFLIIIPARYASTRLPGKPL-AD--IGGKPMIVRVYERASK 39 (245)
T ss_pred ceEEEEecCCCCCCCCCCcc-cc--cCCcCHHHHHHHHHHh
Confidence 57889999999999852221 22 3479998888876543
No 104
>COG3881 PRC-barrel domain containing protein [General function prediction only]
Probab=43.49 E-value=50 Score=31.43 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=50.1
Q ss_pred EEEEEeEeecCCceEEEEecCCCCHHHHhcccCCeEEEeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEec---
Q 010869 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVF--- 203 (498)
Q Consensus 127 v~v~~~R~~~~~~~~ivkf~GId~re~Ae~L~G~~l~v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~--- 203 (498)
+-+....+++ ....+.+..|-++-+ .+.-++++.+..-..... +..++..|++..+.+|+.||.|+||+
T Consensus 39 flvnkggwfh--~h~~lp~~~i~Sig~----k~Imi~vp~~~~~~~~ns--~~ye~m~mk~~lt~dG~iLGmveDVyFde 110 (176)
T COG3881 39 FLVNKGGWFH--KHCCLPVKNIVSIGS----KMIMIYVPYKGSFIRFNS--FTYEIMNMKVILTYDGTILGMVEDVYFDE 110 (176)
T ss_pred EEEecCcEEe--eeeeeeecceeeecc----ceEEEeccccceecccCc--hhhHhhcCceEeccCCcEeeeeeEEEEec
Confidence 3444444442 235678888877655 334567776665444555 44567777777778999999999995
Q ss_pred cCCCceEEEEE
Q 010869 204 NSGANDLLHVM 214 (498)
Q Consensus 204 ~~ga~DlL~V~ 214 (498)
.+|--.=+++.
T Consensus 111 k~gkIvgyevS 121 (176)
T COG3881 111 KTGKIVGYEVS 121 (176)
T ss_pred cCCcEEEEEec
Confidence 34543444444
No 105
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=43.48 E-value=69 Score=33.01 Aligned_cols=67 Identities=9% Similarity=0.088 Sum_probs=38.9
Q ss_pred hccCcEEEEEecCCCCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhh
Q 010869 402 VSEGKKAMVLVVHNSEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLF 477 (498)
Q Consensus 402 Is~GkVavlLlAGGqg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF 477 (498)
|..+=+-+|++|||.|+|+.-. |+. -.|..++.+++..-+ .|+..+ |--+|.......+...+||
T Consensus 4 ~~~~~~~aiIlaaG~g~Rl~~~t~~~pK~-l~pv~g~pii~~~l~------~l~~~g----i~~i~vv~~~~~~~i~~~~ 72 (302)
T PRK13389 4 INTKVKKAVIPVAGLGTRMLPATKAIPKE-MLPLVDKPLIQYVVN------ECIAAG----ITEIVLVTHSSKNSIENHF 72 (302)
T ss_pred ccccceEEEEECCcCCccCCCccCCCCce-eeEECCEEHHHHHHH------HHHHCC----CCEEEEEeCCCHHHHHHHH
Confidence 3333345788899999998431 321 123456887776655 333322 2223334445678899999
Q ss_pred Hh
Q 010869 478 LD 479 (498)
Q Consensus 478 ~~ 479 (498)
..
T Consensus 73 ~~ 74 (302)
T PRK13389 73 DT 74 (302)
T ss_pred cc
Confidence 74
No 106
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=42.99 E-value=42 Score=36.19 Aligned_cols=64 Identities=2% Similarity=-0.032 Sum_probs=40.5
Q ss_pred cEEEEEecCCCCCCCcc---c-CCCCcccCCCc-chHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhC
Q 010869 406 KKAMVLVVHNSEEGNEC---D-PHSVVSESTAN-KSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~---~-p~~l~s~~~~k-slfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n 480 (498)
++.+|+||||.|+|+.- + |+.+ .|..++ .++++.-++ |+..|- =..+|+|+ ...+..+++|.++
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~L-lpi~gk~plI~~~L~~------l~~~Gi---~~vivv~~-~~~~~i~~~l~~~ 71 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPA-VPLAGKYRLIDIPISN------CINSGI---NKIYVLTQ-FNSASLNRHISQT 71 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCccee-eEECCeeEEeHHHHHH------HHHCCC---CEEEEEec-CCHHHHHHHHhcC
Confidence 78899999999999852 2 4321 123456 777766663 333221 13466776 4677888998764
No 107
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=42.81 E-value=65 Score=31.08 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=34.9
Q ss_pred EEEecCCCCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 409 MVLVVHNSEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 409 vlLlAGGqg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
+|+||||.|+|++-. |+.+ .|..++.++....+.+ +..+-+ .-+|+|.. ..+.+++++.+
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~l-lpv~g~pli~~~l~~l------~~~g~~---~v~iv~~~-~~~~~~~~l~~ 66 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKPL-VEFCNKPMIEHQIEAL------AKAGVK---EIILAVNY-RPEDMVPFLKE 66 (233)
T ss_pred EEEecCCCccccCccccCCCCcc-CeECCcchHHHHHHHH------HHCCCc---EEEEEeee-CHHHHHHHHhc
Confidence 578899999998531 4322 1234677776666643 322211 23566654 45677888875
No 108
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=40.70 E-value=55 Score=32.20 Aligned_cols=65 Identities=9% Similarity=0.055 Sum_probs=37.5
Q ss_pred EEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCCc
Q 010869 409 MVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (498)
Q Consensus 409 vlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFG 484 (498)
+|++|||.|+|+.- + |+.+ .|..++.+.+...+ .++..+ |-=+|....+..+..++||.+...||
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~l-lpv~~~p~i~~~~~------~~~~~g----i~~i~iv~~~~~~~i~~~~~~~~~~~ 69 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPM-VEIGGRPILWHIMK------IYSHYG----HNDFILCLGYKGHVIKEYFLNYFLHN 69 (253)
T ss_pred CEEEecCCccccCCccCCCCceE-EEECCEEHHHHHHH------HHHhCC----CceEEEECCCCHHHHHHHHHhhhhhc
Confidence 37788999999842 1 4321 12346777755444 233212 32234444467788999998755444
No 109
>COG2938 Uncharacterized conserved protein [Function unknown]
Probab=40.05 E-value=86 Score=27.29 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=49.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCcccccccccCCHHHHHHHHHHHhcCCHHHHHHHHH
Q 010869 279 KKERRQLEWKERKKFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQ 344 (498)
Q Consensus 279 k~~~~~~~~~~~~~~~~~~~~lk~~L~~~gQ~Hlf~fw~~L~~~er~~L~~qL~~id~~~l~~~~~ 344 (498)
..++|.+.|..| +=|+.+.-+--.+.+ ++|++|+++|+..+..=|..-|.+.++=...
T Consensus 12 d~~~~RL~~rsr-RGmrElDlil~~Fae-------~~~~~lsd~el~~f~~LLe~~D~dL~~Wi~g 69 (94)
T COG2938 12 DARKARLRWRSR-RGMRELDLILGPFAE-------KEFDSLSDEELDEFERLLECEDNDLFNWIMG 69 (94)
T ss_pred HHHHHHHHHHHH-hccHHHHHHHHHHHH-------HHHhhCCHHHHHHHHHHHcCCcHHHHHHHhC
Confidence 456778999999 889999888888887 5799999999999999999999887766554
No 110
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=39.97 E-value=35 Score=36.79 Aligned_cols=39 Identities=8% Similarity=0.099 Sum_probs=27.7
Q ss_pred cEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
++.+|+||||.|+|++.. |+.+ .|..++++++...+.+.
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l-~~i~gkpli~~~i~~l~ 44 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVL-HTLAGKPMVQHVIDAAN 44 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhc-ceeCChhHHHHHHHHHH
Confidence 578899999999999743 5321 23347888887777553
No 111
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=39.66 E-value=31 Score=36.60 Aligned_cols=61 Identities=8% Similarity=0.120 Sum_probs=37.4
Q ss_pred EEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 407 KAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
+.+|+||||.|+|++.. |+.+- |..++++++...+.+.+. .+ .-+|+++ ...+..++++.+
T Consensus 3 ~~aiIlAaG~GtRl~~~~pK~Ll-pi~gkPli~~~i~~l~~~------~~----~i~Ivv~-~~~~~i~~~~~~ 64 (430)
T PRK14359 3 LSIIILAAGKGTRMKSSLPKVLH-TICGKPMLFYILKEAFAI------SD----DVHVVLH-HQKERIKEAVLE 64 (430)
T ss_pred ccEEEEcCCCCccCCCCCCceeC-EECCccHHHHHHHHHHHc------CC----cEEEEEC-CCHHHHHHHHHh
Confidence 46788999999999754 54321 345788888887755431 11 1344444 345666666654
No 112
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=38.83 E-value=93 Score=29.80 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=34.0
Q ss_pred EEEecCCCCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 409 MVLVVHNSEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 409 vlLlAGGqg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
+|+||||.|+|++-. |+.+ .|..++++++...+.+ +..+-. ..+|+|.. ..+...+++.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l-~~~~g~~li~~~l~~l------~~~gi~---~i~vv~~~-~~~~~~~~~~~ 64 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCL-LEINGKPLLERQIETL------KEAGID---DIVIVTGY-KKEQIEELLKK 64 (229)
T ss_pred CEEEeccCccccchhhCCCCcee-eeECCEEHHHHHHHHH------HHCCCc---eEEEEecc-CHHHHHHHHhc
Confidence 377889999998642 3321 1234678777666633 322211 23455554 56667777764
No 113
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=38.58 E-value=37 Score=29.57 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.3
Q ss_pred CeEEEEEEeeeeeeeeeEEEEeccCCcc
Q 010869 76 DFVDVGYVYSVHGLQGEISVKPSTDFPE 103 (498)
Q Consensus 76 e~v~IG~I~~~HGlkGevkV~~~tD~pe 103 (498)
..+.-|+|+++||-.|-|+++..-..|.
T Consensus 57 G~Vi~G~V~R~HGnsGaVrarF~~~LP~ 84 (100)
T COG2451 57 GRVIKGKVVRTHGNSGAVRARFERNLPG 84 (100)
T ss_pred CcEEEEEEEEecCCcceEEEEecCCCCc
Confidence 5899999999999999999987766655
No 114
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=37.49 E-value=46 Score=29.89 Aligned_cols=36 Identities=33% Similarity=0.403 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccccCCHHHHHHHHHHHhcC
Q 010869 288 KERKKFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGI 334 (498)
Q Consensus 288 ~~~~~~~~~~~~lk~~L~~~gQ~Hlf~fw~~L~~~er~~L~~qL~~i 334 (498)
=||||+.|++..+++.|.++. ++++.+.|.++|...
T Consensus 59 fERkKa~R~lkql~k~l~~~~-----------~~~~~~~l~~~l~~~ 94 (114)
T PF10153_consen 59 FERKKATRKLKQLEKKLEEAE-----------DKKEIKELEKELHKL 94 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-----------ccccHHHHHHHHHHH
Confidence 378999999999999998876 677888888887764
No 115
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=36.52 E-value=91 Score=30.23 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=49.0
Q ss_pred cCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcCCCCCcEEEEecccCccceeeCCCCEEEE
Q 010869 182 LVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQI 261 (498)
Q Consensus 182 LIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V~~VDle~~~I~V 261 (498)
.+|-.|.- =|+|.+|.+....-.++|..- .++.+++|.... .+.| .++=.++.|+.-++.+++.|+|
T Consensus 46 y~G~~Vr~------GG~I~~v~N~~~~T~lEVv~~----PLd~~grP~~~~-~s~G--RFla~~~gFLDP~~y~Gr~VTV 112 (182)
T TIGR00752 46 YVGQTARF------GGKVVNVTNLANQTKLEIASL----PLDSIAKPFVEL-QSDG--RFIAYFNGFLDPVNLRERYVTV 112 (182)
T ss_pred cCCCEEEE------CCEEEEEEECCCceEEEEEEc----ccCCCCCcCCCC-CCCC--EEEEEeCCCcChhhcCCCEEEE
Confidence 35666653 389999999888889998852 345567776632 2233 3677789999999998888887
Q ss_pred e
Q 010869 262 T 262 (498)
Q Consensus 262 ~ 262 (498)
.
T Consensus 113 v 113 (182)
T TIGR00752 113 G 113 (182)
T ss_pred E
Confidence 4
No 116
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=35.49 E-value=35 Score=32.78 Aligned_cols=35 Identities=9% Similarity=0.179 Sum_probs=22.2
Q ss_pred EEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHH
Q 010869 409 MVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLL 444 (498)
Q Consensus 409 vlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI 444 (498)
+|+||||.|+|++= . |+.+- |..++++++.+.+.+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll-~i~g~pli~~~l~~l 39 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLI-EVDGKPMIEWVIESL 39 (231)
T ss_pred CEEECCcCCccccccCCCCCceee-EECCEEHHHHHHHhh
Confidence 57899999999842 1 43321 234678777766633
No 117
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=35.29 E-value=64 Score=32.58 Aligned_cols=77 Identities=9% Similarity=0.143 Sum_probs=48.5
Q ss_pred HHHHhhhhccCcEEEEEecCCCCCCCccc-C---------CCCccc-----CCCcchHHHHHHHHHHHHHHHhhcCCccc
Q 010869 395 QKKGNHLVSEGKKAMVLVVHNSEEGNECD-P---------HSVVSE-----STANKSLALLQTLLSDDQRFVKIENRASM 459 (498)
Q Consensus 395 ~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p---------~~l~s~-----~~~kslfql~aerI~~lq~La~~~~~~~I 459 (498)
-..|+++-.+|++..+|+.||.+.. +++ + .|+|.. ..+.++++ -+.+..++. +. =
T Consensus 70 l~~A~~LYk~gk~~~ilvSGg~~~~-~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~e----n~~~a~~i~--~~---~ 139 (239)
T PRK10834 70 IQGAINAYNSGKVNYLLLSGDNALQ-SYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLD----SIVRTRKVF--DT---N 139 (239)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCC-CCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHH----HHHHHHHHh--CC---C
Confidence 4579999999999999999997543 444 2 234321 11233322 111112222 11 2
Q ss_pred eEEEeCCccchHHHHHhhHhCC
Q 010869 460 PLVLVLPALEMQMLEKLFLDND 481 (498)
Q Consensus 460 PwyIMTS~~T~~~T~~fF~~n~ 481 (498)
++.|+||+.+..-..-.|+++.
T Consensus 140 ~~iIVTq~fHm~RA~~ia~~~G 161 (239)
T PRK10834 140 DFIIITQRFHCERALFIALHMG 161 (239)
T ss_pred CEEEECCHHHHHHHHHHHHHcC
Confidence 6899999999999999998643
No 118
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=35.29 E-value=34 Score=30.27 Aligned_cols=25 Identities=8% Similarity=-0.025 Sum_probs=19.3
Q ss_pred CCcccccccccCCHHHHHHHHHHHh
Q 010869 308 EQQHVFHGFRFGEKYQTSLLANHIV 332 (498)
Q Consensus 308 gQ~Hlf~fw~~L~~~er~~L~~qL~ 332 (498)
-++.+=+-+++|+++|+++|.++|.
T Consensus 79 ~~~~lqkRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 79 TNEELQKRLEELSPEELEALQAEIE 103 (104)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 3444555667899999999999986
No 119
>PRK10494 hypothetical protein; Provisional
Probab=35.14 E-value=64 Score=32.66 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=47.1
Q ss_pred HHHhhhhccCcEEEEEecCCCCCCCccc----------CCCCcc-----cCCCcchHHHHHHHHHHHHHHHhhcCCccce
Q 010869 396 KKGNHLVSEGKKAMVLVVHNSEEGNECD----------PHSVVS-----ESTANKSLALLQTLLSDDQRFVKIENRASMP 460 (498)
Q Consensus 396 ~~Gl~~Is~GkVavlLlAGGqg~rlG~~----------p~~l~s-----~~~~kslfql~aerI~~lq~La~~~~~~~IP 460 (498)
..|.++-.+|..+.|++.||.|...+.. ..|+|. +...+++++--.. . .++. +. -+
T Consensus 110 ~~a~~L~r~~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~-~---~~~~--~~---~~ 180 (259)
T PRK10494 110 TEGIRLWRANPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAA-V---KQAI--GD---AP 180 (259)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHH-H---HHHh--CC---CC
Confidence 3499999999999999999986332221 012221 1112444332221 1 1222 22 26
Q ss_pred EEEeCCccchHHHHHhhHhC
Q 010869 461 LVLVLPALEMQMLEKLFLDN 480 (498)
Q Consensus 461 wyIMTS~~T~~~T~~fF~~n 480 (498)
++++||+.++.-....|++.
T Consensus 181 iiLVTsa~Hm~RA~~~f~~~ 200 (259)
T PRK10494 181 FLLVTSASHLPRAMIFFQQE 200 (259)
T ss_pred EEEECCHHHHHHHHHHHHHc
Confidence 89999999999999999984
No 120
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=35.04 E-value=84 Score=30.35 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=21.7
Q ss_pred EEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHH
Q 010869 409 MVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 409 vlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~ 445 (498)
+|++|||.++|.| .. . -.+..|+++++...+++.
T Consensus 2 aiIlA~G~S~R~~-~K-~-ll~l~Gkpli~~~i~~l~ 35 (233)
T cd02518 2 AIIQARMGSTRLP-GK-V-LKPLGGKPLLEHLLDRLK 35 (233)
T ss_pred EEEeeCCCCCCCC-CC-c-ccccCCccHHHHHHHHHH
Confidence 3678888889986 22 1 112246888887777554
No 121
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=34.87 E-value=98 Score=33.40 Aligned_cols=38 Identities=5% Similarity=0.024 Sum_probs=25.5
Q ss_pred cEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLL 444 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI 444 (498)
++.+|+||||.|+|++.. |+.+ .|..+++++.+..+.+
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l-~pi~g~pli~~~l~~l 41 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVM-HPLAGRPMVSWPVAAA 41 (459)
T ss_pred cceEEEEcCCCCcccCCCCCcee-ceeCCccHHHHHHHHH
Confidence 567889999999999753 4321 1234678877766644
No 122
>PF15392 Joubert: Joubert syndrome-associated
Probab=34.55 E-value=58 Score=34.10 Aligned_cols=40 Identities=33% Similarity=0.497 Sum_probs=31.4
Q ss_pred CcchhhHHHHHH-hhHHHHHHHHHHHHHHHHHHHHcCCccc
Q 010869 273 RTDERSKKERRQ-LEWKERKKFQKRLIAAKKKLREMEQQHV 312 (498)
Q Consensus 273 ~~~~~~k~~~~~-~~~~~~~~~~~~~~~lk~~L~~~gQ~Hl 312 (498)
+...|..||||. ..|-.||.-+|.-+.+++.=+.-+|+|=
T Consensus 47 r~~qRtekERrEIq~WMkRKrkERmaEYl~qlaEkR~qEH~ 87 (329)
T PF15392_consen 47 RRPQRTEKERREIQAWMKRKRKERMAEYLKQLAEKREQEHK 87 (329)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 445677788776 5788888888888888888889999993
No 123
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=34.19 E-value=82 Score=31.06 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=37.0
Q ss_pred EEEecCCCCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 409 MVLVVHNSEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 409 vlLlAGGqg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
+|++|||.|+|+.-. |+.+ .|..++++++..-+.+ ++.+-+ ..+|+|.. ..+...++|.+
T Consensus 3 aiIlAaG~gtRl~plt~~~pK~l-lpv~gkpli~~~l~~l------~~~gi~---~i~iv~~~-~~~~i~~~~~~ 66 (267)
T cd02541 3 AVIPAAGLGTRFLPATKAIPKEM-LPIVDKPVIQYIVEEA------VAAGIE---DIIIVTGR-GKRAIEDHFDR 66 (267)
T ss_pred EEEEcCCCCccCCCcccCCCcee-eEECCEEHHHHHHHHH------HHCCCC---EEEEEeCC-chHHHHHHhCC
Confidence 688899999998632 3221 1345788888776643 322211 34677765 45678888864
No 124
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=31.32 E-value=77 Score=30.55 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=25.3
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~ 445 (498)
+++++++|+|.++|++-.+. ++ ..|+.+++...+.+.
T Consensus 2 ~~~aiIlA~g~s~R~~~K~l-~~--i~GkPli~~~i~~l~ 38 (238)
T PRK13368 2 KVVVVIPARYGSSRLPGKPL-LD--ILGKPMIQHVYERAA 38 (238)
T ss_pred cEEEEEecCCCCCCCCCCcc-Cc--cCCcCHHHHHHHHHH
Confidence 47788899999999863331 22 247888887777544
No 125
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=30.20 E-value=38 Score=33.43 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=25.6
Q ss_pred EEEecCCCCCCCcccCCCCc-ccCCCcchHHHHHH-HHHH-HHHHHh
Q 010869 409 MVLVVHNSEEGNECDPHSVV-SESTANKSLALLQT-LLSD-DQRFVK 452 (498)
Q Consensus 409 vlLlAGGqg~rlG~~p~~l~-s~~~~kslfql~ae-rI~~-lq~La~ 452 (498)
++.||-|.|+|+ +| +.++.|+|++.+.+ .|-| +.+|-.
T Consensus 3 AIIlAAG~gsR~------~plT~~tpK~LlkV~g~plIErqI~~L~e 43 (231)
T COG4750 3 AIILAAGLGSRF------VPLTQSTPKSLLKVNGEPLIERQIEQLRE 43 (231)
T ss_pred eEEEeccccccc------ccccccCChHHHHhcCcccHHHHHHHHHH
Confidence 567788999997 33 23566999999988 4433 445543
No 126
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=29.88 E-value=36 Score=37.05 Aligned_cols=79 Identities=19% Similarity=0.160 Sum_probs=43.5
Q ss_pred EEEEeccCCccccccCCCceEEEEeecCcce-eEEEEEEEeEeecCCceEEEEecCCCCHHHHhcccCCeEEEeCCCCCC
Q 010869 93 ISVKPSTDFPELRFTTPGTRWLRQQVLGRET-IREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE 171 (498)
Q Consensus 93 vkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~-~~~v~v~~~R~~~~~~~~ivkf~GId~re~Ae~L~G~~l~v~~~dlp~ 171 (498)
++....|..|+-.|+.-+++|-+....+-.. ..+++++..-..+..-.--|-=+|=.|.++-..|.++.|.|++++.|.
T Consensus 456 eRMViItGppeaqfKAQgrifgKikEenf~~PkeevklethirVPs~~aGRvIGKGGktVnELQnlt~AeV~vPrdqtpd 535 (584)
T KOG2193|consen 456 ERMVIITGPPEAQFKAQGRIFGKIKEENFFLPKEEVKLETHIRVPSSAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPD 535 (584)
T ss_pred eeEEEecCChHHHHhhhhhhhhhhhhhccCCchhhheeeeeeeccchhhhhhhccccccHHHHhccccceEEccccCCCC
Confidence 3444556677767877777765331000000 012333221111111011133467789999999999999999999764
No 127
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=29.60 E-value=2.2e+02 Score=29.70 Aligned_cols=46 Identities=9% Similarity=-0.068 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCCccCCCcEEEEecC
Q 010869 445 SDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVSNISES 496 (498)
Q Consensus 445 ~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFGL~~~qV~fF~Q~ 496 (498)
..++++++.. .+-|||-||--|-..+++.+++.-= +...|+||.++
T Consensus 172 ~~l~~~~~~~---~~~~~vttSRRTp~~~~~~L~~~~~---~~~~~~~~~~~ 217 (311)
T PF06258_consen 172 DQLAALAAAY---GGSLLVTTSRRTPPEAEAALRELLK---DNPGVYIWDGT 217 (311)
T ss_pred HHHHHHHHhC---CCeEEEEcCCCCcHHHHHHHHHhhc---CCCceEEecCC
Confidence 3456666422 2789999999999999999988652 22456566543
No 128
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=28.28 E-value=1.1e+02 Score=32.94 Aligned_cols=64 Identities=3% Similarity=-0.046 Sum_probs=39.9
Q ss_pred CcEEEEEecCCCCCCCccc----CCCCcccCCCcc-hHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 405 GKKAMVLVVHNSEEGNECD----PHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 405 GkVavlLlAGGqg~rlG~~----p~~l~s~~~~ks-lfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
.++.+|+||||.|||+.-- |+.+ .|..++. +.+..-+ .|++.|-+ ..+|+|. ...+..+++|.+
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~l-lpv~gkp~lI~~~l~------~l~~~Gi~---~i~vv~~-~~~~~i~~~~~~ 82 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPA-VYFGGKFRIIDFALS------NCINSGIR---RIGVLTQ-YKAHSLIRHIQR 82 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCccee-EEECCEEEEhHHHHH------HHHHCCCC---eEEEEec-CCHHHHHHHHHh
Confidence 3689999999999998642 3321 1334564 7666655 34332211 2366775 567888888875
No 129
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=27.05 E-value=49 Score=28.15 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=35.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccc-ccccccCCHHHHHHHHHHHhcCCH
Q 010869 280 KERRQLEWKERKKFQKRLIAAKKKLREMEQQHV-FHGFRFGEKYQTSLLANHIVGINS 336 (498)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~lk~~L~~~gQ~Hl-f~fw~~L~~~er~~L~~qL~~id~ 336 (498)
++-|..+| ++.++..+.++....|+... |.||.++..++-.-++.+|..+|-
T Consensus 25 ~~Er~r~W-----y~~qL~~vq~rq~~Lg~~~~~~~~~~d~~~~~L~~~~~~Iqevn~ 77 (84)
T PF11414_consen 25 MEERERDW-----YQQQLQSVQERQRHLGRNGTQFDFQMDLHREQLEFLLAQIQEVNR 77 (84)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHhCccccccCcccccccchhhHHHHHHHHHHH
Confidence 34445566 77899999999999999888 999999998888888888888763
No 130
>PF04410 Gar1: Gar1/Naf1 RNA binding region; InterPro: IPR007504 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. This entry represents Gar1 and Naf1. Naf1 is an RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex, disappearing during maturation of the complex being replaced by GAR1 to yield mature H/ACA snoRNPs complex. Naf1 reveals a striking structural homology with the core domain of archaeal Gar1 [].; GO: 0030515 snoRNA binding, 0031120 snRNA pseudouridine synthesis, 0042254 ribosome biogenesis; PDB: 2EY4_C 3MQK_C 2RFK_C 2HVY_B 3HAY_B 3U28_C 3UAI_C 2EQN_A 2V3M_F.
Probab=26.24 E-value=1.1e+02 Score=28.46 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=25.5
Q ss_pred CcEEEecCCCeEeEEEEEeccCCCceEEEEEe
Q 010869 184 GMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (498)
Q Consensus 184 Gl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~ 215 (498)
|--|++ ++++.||+|.+||-.=.+.+|.|+.
T Consensus 51 ~s~v~~-edr~~iG~V~eiFGpV~~P~y~Vr~ 81 (154)
T PF04410_consen 51 GSVVCL-EDRTKIGKVDEIFGPVNNPYYSVRF 81 (154)
T ss_dssp T-EEEE-TTSBEEEEEEEEESESSS-EEEEE-
T ss_pred CCEEEC-CCCCEeEEEeeEeCCCCceEEEEEe
Confidence 677886 7899999999999988999999995
No 131
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=26.23 E-value=2.1e+02 Score=28.02 Aligned_cols=60 Identities=8% Similarity=0.026 Sum_probs=31.4
Q ss_pred EEecCC--CCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 410 VLVVHN--SEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 410 lLlAGG--qg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
|+|||| .|+|+.-- |+.+ .|..++.+++..-+.+.++ .+-+ -.+|+|.. ..+...+++.+
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~l-lpv~g~plI~~~l~~l~~~-----~gi~---~i~iv~~~-~~~~i~~~l~~ 67 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKPL-FPVAGKPMIHHHIEACAKV-----PDLK---EVLLIGFY-PESVFSDFISD 67 (257)
T ss_pred EEEccCCCCCcccCCccCCCCccc-CeECCeeHHHHHHHHHHhc-----CCCc---EEEEEecC-CHHHHHHHHHh
Confidence 556777 89998542 4321 2345688877766633221 1211 11344433 55666677765
No 132
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=25.82 E-value=84 Score=30.79 Aligned_cols=61 Identities=8% Similarity=-0.010 Sum_probs=35.4
Q ss_pred EEEEecCCCCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 408 AMVLVVHNSEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 408 avlLlAGGqg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
-+|+||||.|+|+.-. |+.+ .|..++++++...+.+. ..|-+ .-+|+|... .+..+++|.+
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~l-lpi~g~pli~~~l~~l~------~~gi~---~v~iv~~~~-~~~i~~~~~~ 66 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEM-LPIVDKPLIQYVVEEAV------EAGIE---DILIVTGRG-KRAIEDHFDT 66 (260)
T ss_pred eEEEEcccCcccCCCcccCCCcee-EEECCEEHHHHHHHHHH------hCCCC---EEEEEeCCc-HHHHHHHhcc
Confidence 3688999999998531 3221 12346888877666432 21211 235666644 5667777763
No 133
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=24.99 E-value=85 Score=33.63 Aligned_cols=38 Identities=3% Similarity=0.115 Sum_probs=26.0
Q ss_pred EEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 407 KAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
+.+|+||||.|+|++.. |+.+ .|..++++++...+++.
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~l-l~i~Gkpli~~~l~~l~ 41 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKVL-HKVCGKPMVEHVVDSVK 41 (458)
T ss_pred ceEEEEeCCCCcccCCCCChhh-CEeCCccHHHHHHHHHH
Confidence 45788889999999754 5332 13347888887777554
No 134
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=24.99 E-value=2.3e+02 Score=21.65 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=25.6
Q ss_pred cceeEEEEEEEeEeecCCceEEEEecCCCCHH
Q 010869 121 RETIREVKLIDGREHPGQKSWILTFEGIDTVE 152 (498)
Q Consensus 121 ~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re 152 (498)
.....+-+|..+|..++...+.|.+.|.+.|-
T Consensus 13 ~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~ 44 (55)
T PF11717_consen 13 DGQWYEAKILDIREKNGEPEYYVHYQGWNKRL 44 (55)
T ss_dssp TTEEEEEEEEEEEECTTCEEEEEEETTSTGCC
T ss_pred CCcEEEEEEEEEEecCCCEEEEEEcCCCCCCc
Confidence 34567888888888766678999999999663
No 135
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=24.65 E-value=2.3e+02 Score=25.23 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=49.3
Q ss_pred HHHHhhhhccCcEEEEEecCCCCCCCccc----------CCCCcc-----cCCCcchHHHHHHHHHHHHHHHhhcCCccc
Q 010869 395 QKKGNHLVSEGKKAMVLVVHNSEEGNECD----------PHSVVS-----ESTANKSLALLQTLLSDDQRFVKIENRASM 459 (498)
Q Consensus 395 ~~~Gl~~Is~GkVavlLlAGGqg~rlG~~----------p~~l~s-----~~~~kslfql~aerI~~lq~La~~~~~~~I 459 (498)
-+.|+++..+|.+..|++.||.+...+.. ..++|. +....++++-. ....+++.. ...-
T Consensus 23 ~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena----~~~~~~~~~--~~~~ 96 (150)
T cd06259 23 LDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYENA----RFSAELLRE--RGIR 96 (150)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHHHH----HHHHHHHHh--cCCC
Confidence 55699999999999999999987652222 012111 11112333221 111222221 1124
Q ss_pred eEEEeCCccchHHHHHhhHhCC
Q 010869 460 PLVLVLPALEMQMLEKLFLDND 481 (498)
Q Consensus 460 PwyIMTS~~T~~~T~~fF~~n~ 481 (498)
..+|+||+....-...+|+...
T Consensus 97 ~i~lVTs~~H~~Ra~~~~~~~~ 118 (150)
T cd06259 97 SVLLVTSAYHMPRALLIFRKAG 118 (150)
T ss_pred eEEEECCHHHHHHHHHHHHHcC
Confidence 6889999999999999999854
No 136
>PF03843 Slp: Outer membrane lipoprotein Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane
Probab=24.39 E-value=1.8e+02 Score=27.38 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=46.1
Q ss_pred cCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcCCCCCcEEEEecccCccceeeC-CCCEEE
Q 010869 182 LVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM-NGREMQ 260 (498)
Q Consensus 182 LIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V~~VDl-e~~~I~ 260 (498)
..|-.|.- =|+|.+|.+...+-.++|... .++.+++|+..... .| . ++=.++.|+.-.+. +.+.|+
T Consensus 32 ~~G~~Vrw------GG~I~~v~n~~~~T~leV~~~----PLd~~grP~~~~~s-~G-R-Fla~~~gFLDP~~y~~Gr~vT 98 (160)
T PF03843_consen 32 YQGQQVRW------GGVIVNVRNLPDQTELEVVQY----PLDSSGRPQTDDPS-QG-R-FLARVPGFLDPAIYAPGRLVT 98 (160)
T ss_pred cCCCEEEE------CCEEEEEEECCCceEEEEEEc----cCCCCCCcCCCCCC-CC-E-EEEEeCCCcCHHHcCCCCEEE
Confidence 35666653 379999999888888888753 35567777775332 23 2 44556778877777 677777
Q ss_pred Ee
Q 010869 261 IT 262 (498)
Q Consensus 261 V~ 262 (498)
|.
T Consensus 99 V~ 100 (160)
T PF03843_consen 99 VV 100 (160)
T ss_pred EE
Confidence 75
No 137
>COG5592 Uncharacterized conserved protein [Function unknown]
Probab=24.11 E-value=1e+02 Score=29.49 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH---cCCcccccccccCCHH----HHHHHHHHHhcCCHHHHHHHH
Q 010869 285 LEWKERKKFQKRLIAAKKKLRE---MEQQHVFHGFRFGEKY----QTSLLANHIVGINSKLLQQAL 343 (498)
Q Consensus 285 ~~~~~~~~~~~~~~~lk~~L~~---~gQ~Hlf~fw~~L~~~----er~~L~~qL~~id~~~l~~~~ 343 (498)
.+||..-|+|.++-..-+.|-+ +.-+.+|.+|.+++.+ +-..++++|..+.+.+.+++-
T Consensus 91 ik~kR~~k~~e~~p~fyK~LtdHn~aEE~~IfPrvks~~~E~~~~~~kl~LeiI~~~~~dry~k~t 156 (171)
T COG5592 91 IKWKRPDKIKERVPLFYKTLTDHNLAEEEYIFPRVKSLKGEDEQSALKLALEIIEQYGFDRYQKLT 156 (171)
T ss_pred HhhccchHHHHHHHHHHHHHHHccccccchhhHHHHhhcchhhHHHHHHHHHHHHHhCchhhhhhh
Confidence 3566666888888777777764 4678899999998843 445667889888877776654
No 138
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=24.03 E-value=2e+02 Score=28.08 Aligned_cols=61 Identities=23% Similarity=0.423 Sum_probs=44.0
Q ss_pred EeEEEEEeccCCCceEEEEEeecccccccCccccccCcCCCCCcEEEEecccCccceeeCCCCEEEEe
Q 010869 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQIT 262 (498)
Q Consensus 195 ~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V~~VDle~~~I~V~ 262 (498)
.=|+|+++.+....-.|+|-.- .++-.+||...+.. .| .+|-+++-|+.=||..++.|+|-
T Consensus 58 ~GGkVvnv~n~~~rTrlEi~sl----PldS~arP~l~~~~-qG--RfiAy~~GFlDPv~~~gr~vTv~ 118 (191)
T COG3065 58 FGGKVVNVINQKGRTRLEIASL----PLDSGARPDLEAES-QG--RFIAYVNGFLDPVNFRGRLVTVV 118 (191)
T ss_pred eCcEEEEEecCCCcEEEEEEee----ccCcccCCCcCCCC-Cc--eEEEEcccccChhhhcCcEEEEE
Confidence 3489999999888888888752 12333555543222 23 48999999999999999999874
No 139
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=23.64 E-value=1.5e+02 Score=25.59 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=35.9
Q ss_pred CCCcEEEEecccC-ccceeeCCCCEEEEeCCCCcccccCCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010869 235 ASGRLVWIPFVEE-IVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAKKKLRE 306 (498)
Q Consensus 235 ~~gkevLIPfv~e-~V~~VDle~~~I~V~~peGLLeL~~~~~~~~k~~~~~~~~~~~~~~~~~~~~lk~~L~~ 306 (498)
..+.++|||.-.. ||+--=.+..+|.|++-.|.. -|++-.+. .+-+++|+..+++.+.+
T Consensus 36 ~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~------vE~s~~eA-------~~~l~~r~~~l~~~~~~ 95 (120)
T PF02996_consen 36 KKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYY------VEMSLEEA-------IEFLKKRIKELEEQLEK 95 (120)
T ss_dssp -TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEE------EEEEHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred CCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeE------EEecHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3567899999864 454422367889999988863 22333333 55566666666665544
No 140
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.31 E-value=1.1e+02 Score=26.35 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=27.5
Q ss_pred hhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEE
Q 010869 179 TRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVM 214 (498)
Q Consensus 179 ~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~ 214 (498)
+.|.+|+.|.-..+|. +|+|++|-.--.++++++-
T Consensus 7 V~~~VG~avrYvnTgT-vgrV~dIkkdEdG~~WV~L 41 (97)
T COG4014 7 VNDKVGDAVRYVNTGT-VGRVVDIKKDEDGDIWVVL 41 (97)
T ss_pred hhhhhcceEEEeecCc-eeeEEEEEeecCCceEEEE
Confidence 3466999998777887 7999999866667888664
No 141
>PF13945 NST1: Salt tolerance down-regulator
Probab=23.28 E-value=40 Score=32.90 Aligned_cols=29 Identities=7% Similarity=0.025 Sum_probs=21.5
Q ss_pred cccccccCCHHHHHHHHHHHhcCCHHHHHHHHH
Q 010869 312 VFHGFRFGEKYQTSLLANHIVGINSKLLQQALQ 344 (498)
Q Consensus 312 lf~fw~~L~~~er~~L~~qL~~id~~~l~~~~~ 344 (498)
|=.||.+|+++||..|+ .||-..|-+-++
T Consensus 107 LkeFW~SL~eeERr~LV----kIEKe~VLkkmK 135 (190)
T PF13945_consen 107 LKEFWESLSEEERRSLV----KIEKEAVLKKMK 135 (190)
T ss_pred HHHHHHccCHHHHHHHH----HhhHHHHHHHHH
Confidence 34599999999999876 477666555554
No 142
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=21.98 E-value=96 Score=27.22 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=27.7
Q ss_pred Cccccccc-ccCCHHHHHHHHHHHhcCCHHHHHHHHH
Q 010869 309 QQHVFHGF-RFGEKYQTSLLANHIVGINSKLLQQALQ 344 (498)
Q Consensus 309 Q~Hlf~fw-~~L~~~er~~L~~qL~~id~~~l~~~~~ 344 (498)
|-+||+-| +.=+.+||..|+++|..+|+.-..+..+
T Consensus 59 qlkLf~qWf~~W~~~ern~fl~~Lee~D~~f~~k~~~ 95 (98)
T PF14969_consen 59 QLKLFRQWFPKWSEEERNKFLEQLEEIDPDFVAKFYQ 95 (98)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhChHHHHHHHH
Confidence 33455444 3567999999999999999988877765
No 143
>PF13864 Enkurin: Calmodulin-binding
Probab=21.35 E-value=3.4e+02 Score=23.21 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=26.6
Q ss_pred ccccccCCHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010869 313 FHGFRFGEKYQTSLLANHIVGINSKLLQQALQN 345 (498)
Q Consensus 313 f~fw~~L~~~er~~L~~qL~~id~~~l~~~~~~ 345 (498)
=.++..|+++||..+++.|.. ++..++..+++
T Consensus 31 ~~~~~~l~eeER~~lL~~Lk~-~~~el~~ey~~ 62 (98)
T PF13864_consen 31 PPGMRLLSEEERQELLEGLKK-NWDELNKEYQK 62 (98)
T ss_pred ccccccCCHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 367778999999999999987 77778777763
No 144
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=21.29 E-value=2.7e+02 Score=26.07 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=21.6
Q ss_pred CcEEEEeccc-CccceeeCCCCEEEEeCCCCc
Q 010869 237 GRLVWIPFVE-EIVPIVDMNGREMQITPPKGL 267 (498)
Q Consensus 237 gkevLIPfv~-e~V~~VDle~~~I~V~~peGL 267 (498)
|+|+|||.=. .||+-.=....+++|++-.|.
T Consensus 55 g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~ 86 (145)
T COG1730 55 GKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGY 86 (145)
T ss_pred CceEEEEcCCCceEEEEeccCceEEEEcCCce
Confidence 6799999774 444432222388999998886
No 145
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=20.15 E-value=50 Score=34.23 Aligned_cols=60 Identities=3% Similarity=-0.007 Sum_probs=33.4
Q ss_pred EEEecCCCCCCCcc---c-CCCCcccCCCc-chHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 409 MVLVVHNSEEGNEC---D-PHSVVSESTAN-KSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 409 vlLlAGGqg~rlG~---~-p~~l~s~~~~k-slfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
+|+||||.|+|++= + |+.+ .|..++ .+++..-+ .|+..+-+ ..+|+|... .+..+++|.+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~l-lpv~g~~pli~~~l~------~l~~~gi~---~i~iv~~~~-~~~i~~~~~~ 65 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPA-VPFGGKYRIIDFPLS------NCINSGIR---RIGVLTQYK-SHSLNRHIQR 65 (361)
T ss_pred CEEeCCCCCCccchhhhCCcccc-ceecceeeEeeehhh------hhhhcCCc---eEEEEeccC-hHHHHHHHHh
Confidence 37889999999852 1 3221 123356 46666555 33322211 346666654 4467788874
Done!