Query 010869
Match_columns 498
No_of_seqs 267 out of 1334
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 15:59:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h9n_A Ribosome maturation fac 100.0 2.7E-46 9.3E-51 352.3 22.1 172 77-270 2-174 (177)
2 2f1l_A 16S rRNA processing pro 100.0 7.6E-46 2.6E-50 352.1 20.9 167 74-267 17-187 (187)
3 2qgg_A 16S rRNA-processing pro 100.0 7.3E-45 2.5E-49 344.0 19.1 170 74-267 8-182 (182)
4 2dyi_A Probable 16S rRNA-proce 100.0 1.4E-42 4.8E-47 322.8 16.8 156 76-269 2-162 (162)
5 2yqc_A UDP-N-acetylglucosamine 100.0 6.4E-36 2.2E-40 320.4 12.9 186 296-497 5-201 (486)
6 1jv1_A Glcnac1P uridyltransfer 100.0 2E-34 6.9E-39 310.0 17.8 190 297-497 3-198 (505)
7 3ogz_A UDP-sugar pyrophosphory 100.0 8.2E-32 2.8E-36 292.7 11.0 179 295-497 7-198 (630)
8 3r3i_A UTP--glucose-1-phosphat 99.9 1.3E-27 4.6E-32 255.9 8.3 159 308-497 52-212 (528)
9 3oc9_A UDP-N-acetylglucosamine 99.9 1.5E-25 5.1E-30 234.6 11.9 104 393-497 22-132 (405)
10 3gue_A UTP-glucose-1-phosphate 99.9 3.4E-23 1.2E-27 220.3 5.6 94 397-497 69-164 (484)
11 2icy_A Probable UTP-glucose-1- 99.8 2.5E-19 8.6E-24 191.2 8.6 141 332-497 22-164 (469)
12 2oeg_A UTP-glucose-1-phosphate 99.8 2.6E-19 8.9E-24 192.3 5.3 148 321-497 14-164 (505)
13 2i5k_A UTP--glucose-1-phosphat 99.7 1.8E-17 6.2E-22 177.7 7.6 153 312-496 20-176 (488)
14 1eys_H Photosynthetic reaction 95.5 0.029 1E-06 55.3 7.8 68 179-268 148-219 (259)
15 3htr_A Uncharacterized PRC-bar 94.6 0.065 2.2E-06 46.7 6.7 75 176-268 14-91 (120)
16 1pm3_A MTH1895; unknown functi 91.0 0.4 1.4E-05 40.2 6.0 38 176-214 20-61 (97)
17 3st8_A Bifunctional protein GL 90.4 0.16 5.6E-06 53.7 3.9 79 404-496 10-90 (501)
18 3q80_A 2-C-methyl-D-erythritol 89.2 0.45 1.5E-05 45.5 5.6 65 405-478 6-71 (231)
19 1rzh_H Reaction center protein 88.4 0.87 3E-05 44.7 7.0 58 180-262 146-206 (260)
20 2qh5_A PMI, ALGA, mannose-6-ph 88.1 0.84 2.9E-05 45.0 6.9 67 406-485 4-76 (308)
21 2wjn_H Reaction center protein 87.7 0.84 2.9E-05 44.8 6.4 59 180-262 150-211 (258)
22 2xwl_A 2-C-methyl-D-erythritol 85.0 0.77 2.6E-05 42.2 4.5 39 406-445 2-41 (223)
23 1fxo_A Glucose-1-phosphate thy 84.8 1.4 4.9E-05 43.2 6.6 77 406-495 2-82 (293)
24 4ecm_A Glucose-1-phosphate thy 83.8 1.5 5.3E-05 42.0 6.2 78 405-495 23-104 (269)
25 3f1c_A Putative 2-C-methyl-D-e 82.0 1.3 4.3E-05 42.1 4.7 38 406-444 3-42 (246)
26 3d5n_A Q97W15_sulso; NESG, SSR 82.0 1.2 4E-05 40.9 4.3 39 406-446 2-40 (197)
27 1vgw_A 4-diphosphocytidyl-2C-m 81.0 1.1 3.8E-05 41.4 3.9 40 405-445 5-45 (231)
28 1lvw_A Glucose-1-phosphate thy 81.0 2.3 7.9E-05 41.8 6.3 76 407-495 4-83 (295)
29 1h7e_A 3-deoxy-manno-octuloson 80.7 3.4 0.00012 38.5 7.2 60 406-479 2-61 (245)
30 3rsb_A Adenosylcobinamide-phos 80.5 1 3.5E-05 40.7 3.3 61 408-479 2-62 (196)
31 2wee_A MOBA-related protein; u 79.7 1.5 5.2E-05 39.2 4.2 62 405-478 4-65 (197)
32 1mc3_A Glucose-1-phosphate thy 79.5 1.7 5.7E-05 42.9 4.7 76 407-495 4-83 (296)
33 1ezi_A CMP-N-acetylneuraminic 79.2 1.7 5.7E-05 40.4 4.4 37 406-445 4-40 (228)
34 1sqr_A 50S ribosomal protein L 79.0 1.8 6E-05 36.4 3.9 28 138-165 19-46 (95)
35 2yc3_A 2-C-methyl-D-erythritol 78.5 1.5 5E-05 40.6 3.8 39 406-445 4-43 (228)
36 3j21_c 50S ribosomal protein L 78.5 2.1 7.1E-05 35.4 4.1 27 138-164 19-45 (87)
37 1vpa_A 2-C-methyl-D-erythritol 78.1 1.1 3.7E-05 41.7 2.7 39 406-445 13-52 (234)
38 1i52_A 4-diphosphocytidyl-2-C- 77.7 1.3 4.5E-05 41.3 3.2 39 406-445 7-46 (236)
39 2waw_A MOBA relate protein; un 76.8 1.9 6.5E-05 38.6 3.9 62 406-479 5-66 (199)
40 3pnn_A Conserved domain protei 75.8 7.8 0.00027 37.9 8.4 79 406-496 5-83 (303)
41 1tzf_A Glucose-1-phosphate cyt 75.4 2.7 9.3E-05 39.5 4.8 63 407-480 3-69 (259)
42 1e5k_A Molybdopterin-guanine d 75.0 2.3 8E-05 39.1 4.1 38 406-445 6-44 (201)
43 4fce_A Bifunctional protein GL 74.9 2.4 8.1E-05 43.5 4.5 64 405-479 7-71 (459)
44 3izc_j 60S ribosomal protein R 73.9 2.3 7.7E-05 36.5 3.3 27 138-164 25-51 (107)
45 4a18_H RPL35A; ribosome, eukar 73.3 3 0.0001 36.1 3.9 58 139-215 33-91 (113)
46 2y6p_A 3-deoxy-manno-octuloson 72.9 2.7 9.2E-05 38.8 4.0 38 406-446 2-39 (234)
47 2x65_A Mannose-1-phosphate gua 72.1 2.4 8.2E-05 42.6 3.6 63 408-479 3-71 (336)
48 2vsh_A TARI, 2-C-methyl-D-eryt 71.6 3 0.0001 38.4 3.9 64 407-479 3-68 (236)
49 3ngw_A Molybdopterin-guanine d 71.4 2.4 8.3E-05 39.6 3.3 47 407-467 1-47 (208)
50 2px7_A 2-C-methyl-D-erythritol 70.6 3.1 0.00011 39.1 3.8 37 406-443 25-61 (236)
51 3iz5_j 60S ribosomal protein L 67.4 3.4 0.00012 35.6 3.0 60 138-215 29-89 (111)
52 3oam_A 3-deoxy-manno-octuloson 66.7 4.5 0.00015 38.5 4.1 37 406-445 2-38 (252)
53 2cu2_A Putative mannose-1-phos 66.2 3 0.0001 41.8 2.9 38 407-446 3-47 (337)
54 2v0h_A Bifunctional protein GL 65.2 6.3 0.00022 40.2 5.2 40 405-445 4-44 (456)
55 2xme_A CTP-inositol-1-phosphat 64.4 4.3 0.00015 37.7 3.4 39 406-445 18-56 (232)
56 3juk_A UDP-glucose pyrophospho 63.2 11 0.00037 36.1 6.1 63 407-480 3-69 (281)
57 3tqd_A 3-deoxy-manno-octuloson 60.3 5.7 0.00019 38.4 3.5 38 406-446 9-46 (256)
58 1vic_A 3-deoxy-manno-octuloson 60.0 6.4 0.00022 37.3 3.8 37 406-445 2-38 (262)
59 1jyk_A LICC protein, CTP:phosp 59.9 4.9 0.00017 38.3 3.0 39 406-445 25-67 (254)
60 2hvy_B GAR1, small nucleolar R 59.2 11 0.00036 32.2 4.6 32 183-215 33-64 (104)
61 1qwj_A Cytidine monophospho-N- 58.9 9.2 0.00032 35.5 4.6 38 406-446 3-40 (229)
62 3brk_X Glucose-1-phosphate ade 58.2 8 0.00027 39.4 4.4 68 406-486 12-84 (420)
63 2e8b_A Probable molybdopterin- 57.6 2.1 7.2E-05 39.3 -0.1 16 406-421 14-29 (201)
64 1w55_A ISPD/ISPF bifunctional 57.4 7.6 0.00026 39.8 4.1 39 406-445 3-42 (371)
65 2ey4_C Small nucleolar RNP sim 57.1 9.9 0.00034 30.9 3.9 32 183-215 33-64 (82)
66 3k8d_A 3-deoxy-manno-octuloson 56.2 7.8 0.00027 37.5 3.8 38 406-446 18-55 (264)
67 3u28_C H/ACA ribonucleoprotein 52.4 39 0.0013 29.1 7.0 33 183-216 53-85 (114)
68 1sqr_A 50S ribosomal protein L 52.2 7.3 0.00025 32.7 2.3 27 77-103 51-77 (95)
69 3j21_c 50S ribosomal protein L 50.8 8.9 0.0003 31.6 2.6 26 78-103 52-77 (87)
70 4a18_H RPL35A; ribosome, eukar 50.2 11 0.00037 32.6 3.2 31 77-107 71-101 (113)
71 1yp2_A Glucose-1-phosphate ade 43.6 11 0.00037 38.7 2.6 63 406-479 20-87 (451)
72 3iz5_j 60S ribosomal protein L 42.5 12 0.00041 32.2 2.3 32 77-108 69-100 (111)
73 4evw_A Nucleoside-diphosphate- 40.6 7 0.00024 37.4 0.6 35 409-444 2-40 (255)
74 2dpw_A Hypothetical protein TT 40.2 16 0.00055 33.9 3.0 39 406-445 2-43 (232)
75 2ux8_A Glucose-1-phosphate uri 38.5 21 0.00073 34.3 3.7 63 406-479 14-80 (297)
76 2e3d_A UTP--glucose-1-phosphat 36.5 23 0.0008 34.1 3.6 63 406-479 8-74 (302)
77 3izc_j 60S ribosomal protein R 33.4 12 0.00042 31.9 0.9 32 77-108 65-96 (107)
78 1hm9_A GLMU, UDP-N-acetylgluco 31.2 23 0.00079 36.2 2.7 37 408-445 13-50 (468)
79 2pa4_A UTP-glucose-1-phosphate 30.8 29 0.001 34.0 3.3 61 407-478 13-77 (323)
80 2eqn_A Hypothetical protein LO 30.1 56 0.0019 27.4 4.4 32 184-216 53-84 (103)
81 2ggo_A 401AA long hypothetical 29.1 29 0.001 34.6 3.0 58 408-479 2-63 (401)
82 4fcu_A 3-deoxy-manno-octuloson 26.4 39 0.0013 32.2 3.2 36 407-445 2-38 (253)
83 2v3m_A NAF1; ribosomal protein 24.0 65 0.0022 28.3 3.9 66 184-255 60-125 (131)
84 3nau_A Zinc fingers and homeob 22.9 1.4E+02 0.0048 23.1 5.2 44 291-344 10-53 (66)
No 1
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=100.00 E-value=2.7e-46 Score=352.33 Aligned_cols=172 Identities=28% Similarity=0.426 Sum_probs=155.3
Q ss_pred eEEEEEEeeeeeeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHHHHhc
Q 010869 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARP 156 (498)
Q Consensus 77 ~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re~Ae~ 156 (498)
+|.||+|+++||+||||||+++||+|+ +|..++.+|+.. .+ .+++++|+++|.|+ +.+++||+||+|||+|++
T Consensus 2 ~v~vG~I~~~hGikGevkv~~~Td~pe-~~~~~~~~~l~~--~~--~~~~~~v~~~r~~~--~~~lvkf~gi~dr~~Ae~ 74 (177)
T 3h9n_A 2 IEVVGKLGSTYGIRGWLRIYSSTEQAE-SIFDYQPWFLKI--KG--EWQSIELENWRYHN--HEIIVKLKGVDDREAAQI 74 (177)
T ss_dssp EEEEEEEEEECSSSSCEEEEECSSSSG-GGGGCCSEEEEE--TT--EEEEECEEEEEESS--SCEEEEESSCCSHHHHHT
T ss_pred EEEEEEEeCCCccCEEEEEEECCCCHH-HhcCCCEEEEec--CC--eEEEEEEEEEEEeC--CEEEEEEcCCCCHHHHHH
Confidence 689999999999999999999999999 777788888865 33 45789999999984 679999999999999999
Q ss_pred ccCCeEEEeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcCCCC
Q 010869 157 LVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236 (498)
Q Consensus 157 L~G~~l~v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~ 236 (498)
|+|+.|||+++++|+|++|||||+|||||+|++ ++|+.||+|++|+++||||||+|+.... ...+
T Consensus 75 L~G~~l~v~~~~lp~l~edE~Y~~dLiGl~V~~-~~g~~lG~V~~v~~~gandvl~V~~~~~--------------~~~~ 139 (177)
T 3h9n_A 75 LANVEIGVDLSVFPELEEGDYYWHDLIGCTVVN-LEGYTMGTVTEMMETGSNDVLVVKANTK--------------DAFG 139 (177)
T ss_dssp TTTCEEEEECCCCCCCSSSCGGGGGTTTCEEEE-TTCCEEEEEEEEEESSSCEEEEEECCTT--------------CTTC
T ss_pred hcCCEEEEEHHHCCCCCCCCCCHHHhcCCEEEe-CCCCEEEEEEEEeeCCCcEEEEEEeccc--------------cCCC
Confidence 999999999999999999999999999999997 5788999999999999999999986210 0125
Q ss_pred CcEEEEecc-cCccceeeCCCCEEEEeCCCCcccc
Q 010869 237 GRLVWIPFV-EEIVPIVDMNGREMQITPPKGLLEL 270 (498)
Q Consensus 237 gkevLIPfv-~e~V~~VDle~~~I~V~~peGLLeL 270 (498)
++++||||+ ++||++||+++|+|+|+||+||||.
T Consensus 140 ~~e~LIP~v~~~~V~~VDl~~~~I~v~~p~glle~ 174 (177)
T 3h9n_A 140 KQERLIPFLYEQVVKRVDLTTKTIEVDWDAGFLEH 174 (177)
T ss_dssp CSEEEEECCBTTTEEEEEGGGTEEEECCCSSTTCC
T ss_pred CcEEEeeccchheEEEEeCCCCEEEEECCcchhhc
Confidence 789999999 9999999999999999999999985
No 2
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=100.00 E-value=7.6e-46 Score=352.06 Aligned_cols=167 Identities=30% Similarity=0.505 Sum_probs=147.5
Q ss_pred CCCeEEEEEEeeeeeeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHHH
Q 010869 74 GLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQ 153 (498)
Q Consensus 74 ~~e~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re~ 153 (498)
.++++.||+|+++|||||||||+++||+|+ +|...+.+|+.. .+ ..++++++++|.| ++.+|+||+||+|||+
T Consensus 17 ~~~~v~VG~I~~~hGikGeVkV~~~Td~pe-~~~~~~~~~l~~--~~--~~~~~~v~~~r~~--~~~~ivkf~gi~dr~~ 89 (187)
T 2f1l_A 17 ADDLVVIGKIVSVYGIRGEVKVYSFTDPLD-NLLDYRRWTLRR--DG--EIRQAELVRGRLH--GKVLAAKLKGLDDREE 89 (187)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEECSSSGG-GGGGCCEEEEEE--TT--EEEEEEEEEEEEE--TTEEEEEETTCCSHHH
T ss_pred CCCEEEEEEEeCCEeeCEEEEEEECCCCHH-HhccCCEEEEec--CC--cEEEEEEEEEEEE--CCEEEEEEeCCCCHHH
Confidence 477899999999999999999999999998 898888888753 22 4568999999988 4689999999999999
Q ss_pred HhcccCCeEEEeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcC
Q 010869 154 ARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSAS 233 (498)
Q Consensus 154 Ae~L~G~~l~v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~ 233 (498)
|++|+|+.|||+++++|+|++|||||+|||||+|++ ++|+.||+|++|+++||||||+|+.
T Consensus 90 Ae~L~G~~l~v~r~~lp~l~edEfY~~DLIGl~V~~-~~g~~lG~V~~v~~~ganDvlvV~~------------------ 150 (187)
T 2f1l_A 90 ARTFTGYEICIPRSELPSLEEGEYYWHQLEGLKVID-QGRQLLGVIDHLLETGANDVMVVKP------------------ 150 (187)
T ss_dssp HHTTTTCEEEEEGGGSCC-----CCHHHHTTCEEEE-TTSCEEEEEEEEECCSSSCEEEEEC------------------
T ss_pred HHHhCCCEEEEEHHHCCCCCCCCEeHHHcCCeEEEe-CCCCEEEEEEEEccCCCcEEEEEEe------------------
Confidence 999999999999999999999999999999999997 5788999999999999999999986
Q ss_pred CCCC----cEEEEecccCccceeeCCCCEEEEeCCCCc
Q 010869 234 DASG----RLVWIPFVEEIVPIVDMNGREMQITPPKGL 267 (498)
Q Consensus 234 ~~~g----kevLIPfv~e~V~~VDle~~~I~V~~peGL 267 (498)
.++ +++||||+++||++||+++++|+|+||+||
T Consensus 151 -~~g~~~~ke~LIPfv~~~V~~VDle~~~I~V~~p~GL 187 (187)
T 2f1l_A 151 -CAGSLDDRERLLPYTGQCVLSIDLAAGEMRVDWDADF 187 (187)
T ss_dssp -CTTSSSSCCEEEECSTTTEEEEETTTTEEEECCCTTC
T ss_pred -CCCCCCCcEEEEechHHhcCEEeCCCCEEEEeCCCCC
Confidence 234 799999999999999999999999999997
No 3
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=100.00 E-value=7.3e-45 Score=344.00 Aligned_cols=170 Identities=21% Similarity=0.323 Sum_probs=152.6
Q ss_pred CCCeEEEEEEeeeeeeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHHH
Q 010869 74 GLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQ 153 (498)
Q Consensus 74 ~~e~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re~ 153 (498)
+++++.||+|+++|||||||||+++||+|+ +|..++.+|+.. .+ ..++++|+++|.| ++.+|+||+||+|||+
T Consensus 8 ~~~~v~vG~I~~~hGikGevkv~~~td~pe-~~~~~~~~~l~~--~~--~~~~~~v~~~r~~--~~~~ivkf~gi~dr~~ 80 (182)
T 2qgg_A 8 PEDRIQIGQLRSAYGLNGWLWVYSNTEPMS-NMFDYLPWYIET--KA--GWQTVDVKRWKPH--GKGLVVSLKGVSDRTG 80 (182)
T ss_dssp CSSEEEEEEEEEEETTTTEEEEEECSSSGG-GGGGSSSEEEEE--TT--EEEEECEEEEEEE--TTEEEEEETTCCSHHH
T ss_pred CCCEEEEEEEeCCcccCEEEEEEECCCCHH-HhccCCEEEEec--CC--cEEEEEEEEEEEc--CCEEEEEECCCCCHHH
Confidence 468999999999999999999999999998 898888888854 33 4568999999998 4689999999999999
Q ss_pred HhcccCCeEEEeCCCCCCCCCCccchhccCCcEEEecC---CCeEeEEEEEeccCCCceEEEEEeecccccccCcccccc
Q 010869 154 ARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE---TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASS 230 (498)
Q Consensus 154 Ae~L~G~~l~v~~~dlp~L~edEfY~~DLIGl~V~d~~---~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~ 230 (498)
|++|+|+.|||+++++|+|++|||||+|||||+|++.+ +|+.||+|++|+++||||||+|+.+.
T Consensus 81 Ae~L~G~~l~v~~~~lp~l~ede~Y~~dLiGl~V~~~~~~~~g~~lG~V~~v~~~gandvl~V~~~~------------- 147 (182)
T 2qgg_A 81 AESLVASNIWIAKSQLPKADVDEYYWSDLKGLTVLGLDDEEQEVNLGQIHELFETGANDVMVVRATP------------- 147 (182)
T ss_dssp HHTTTTCEEEEETTCCCCCHHHHCCHHHHTTCEEEEECTTSCEEEEEEEEEEEECSSCEEEEEECCS-------------
T ss_pred HHHhCCCEEEEEHHHCCCCCCCcEeHHHhCCcEEEEcccCCCCcEEEEEEEEccCCCcEEEEEEecc-------------
Confidence 99999999999999999999999999999999999731 68899999999999999999998521
Q ss_pred CcCCCCC-cEEEEeccc-CccceeeCCCCEEEEeCCCCc
Q 010869 231 SASDASG-RLVWIPFVE-EIVPIVDMNGREMQITPPKGL 267 (498)
Q Consensus 231 ~~~~~~g-kevLIPfv~-e~V~~VDle~~~I~V~~peGL 267 (498)
..++ +++|||| + +||++||+++++|+|+||+||
T Consensus 148 ---~~~g~ke~LIPf-~~~~V~~VDl~~~~I~v~~p~gl 182 (182)
T 2qgg_A 148 ---DSIDSEERMIPW-HKDVVQRVDLEAGRIYVNWGVDY 182 (182)
T ss_dssp ---SSSSSCCEEEEC-CTTTEEEEETTTTEEEESCCCC-
T ss_pred ---CCCCCeEEEeec-ChhhEeEEECCCCEEEEeCCCCC
Confidence 0245 7999999 9 999999999999999999997
No 4
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=100.00 E-value=1.4e-42 Score=322.75 Aligned_cols=156 Identities=23% Similarity=0.391 Sum_probs=140.5
Q ss_pred CeEEEEEEeeeeeeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeEeecCCceEEEEecCCCCHHHHh
Q 010869 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQAR 155 (498)
Q Consensus 76 e~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~R~~~~~~~~ivkf~GId~re~Ae 155 (498)
+++.||+|+++||+|||||| +||+ +|.....+|+.. + .++ +++++|.| ++.+++||+||+|||+|+
T Consensus 2 ~~v~vG~I~~~hGikGevkv--~td~---~~~~~~~~~~~~---~--~~~--~v~~~r~~--~~~~ivkf~gi~~r~~Ae 67 (162)
T 2dyi_A 2 RLVEIGRFGAPYALKGGLRF--RGEP---VVLHLERVYVEG---H--GWR--AIEDLYRV--GEELVVHLAGVTDRTLAE 67 (162)
T ss_dssp CEEEEEEEEEECSSSSCEEE--EECG---GGGGCSEEEETT---T--EEE--EEEEEEEE--TTEEEEEETTCCSHHHHH
T ss_pred CEEEEEEEeCCCccCeEEEE--EEch---HhcCCCEEEEeC---C--CEE--EEEEEEEE--CCEEEEEEcCCCCHHHHH
Confidence 68999999999999999999 8988 677776666632 2 222 88999988 468999999999999999
Q ss_pred cccCCeEEEeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcCCC
Q 010869 156 PLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA 235 (498)
Q Consensus 156 ~L~G~~l~v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~ 235 (498)
+|+|+.|||+++++|+|++|||||+|||||+|+ ++|+.||+|++|+++||||||+|+. .
T Consensus 68 ~L~G~~l~v~~~~lp~l~e~e~y~~dLiGl~V~--~~g~~lG~V~~v~~~ga~dvl~V~~-------------------~ 126 (162)
T 2dyi_A 68 ALVGLRVYAEVADLPPLEEGRYYYFALIGLPVY--VEGRQVGEVVDILDAGAQDVLIIRG-------------------V 126 (162)
T ss_dssp TTTTCEEEEEGGGSCCCCTTCCCHHHHTTCEEE--ETTEEEEEEEEEEEETTEEEEEEEE-------------------C
T ss_pred HhCCCEEEEEHHHCCCCCCCcEeHHHhCCeEEE--ECCeEEEEEEEEccCCCceEEEEEe-------------------C
Confidence 999999999999999999999999999999999 4788999999999999999999997 2
Q ss_pred CC-----cEEEEecccCccceeeCCCCEEEEeCCCCccc
Q 010869 236 SG-----RLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 269 (498)
Q Consensus 236 ~g-----kevLIPfv~e~V~~VDle~~~I~V~~peGLLe 269 (498)
++ +++||||+++||+ || +++|+|+||+||||
T Consensus 127 ~g~~~~~~e~LIPfv~~~V~-VD--~~~I~v~~p~glld 162 (162)
T 2dyi_A 127 GERLRDRAERLVPLQAPYVR-VE--EGSIHVDPIPGLFD 162 (162)
T ss_dssp CSSGGGSTTEEEETTCTTEE-EC--SSCEEECCCTTTCC
T ss_pred CCCcCcCcEEEEeccccEEE-EE--CCEEEEeCCchhcC
Confidence 34 7899999999999 99 89999999999986
No 5
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=6.4e-36 Score=320.41 Aligned_cols=186 Identities=10% Similarity=0.151 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHcCCcccccccccCCHHHHHHHHHHHhcC-CHHHHHHHHHhccccccccchhhhhchhhhhhhhhcccCC
Q 010869 296 RLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGI-NSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKIS 374 (498)
Q Consensus 296 ~~~~lk~~L~~~gQ~Hlf~fw~~L~~~er~~L~~qL~~i-d~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~piP 374 (498)
..++++++|+++||+|||+||++|+++||++|++||..| |+..+++.++.+..+.+ . + +....+.|+|
T Consensus 5 ~~~~l~~~l~~~gQ~hl~~~~~~l~~~ek~~l~~ql~~~~d~~~l~~~~~~~~~~~~---~----~----~~~~~i~p~p 73 (486)
T 2yqc_A 5 SQQQIIDSFKQANQDQLFQYYDSLTIDQQQEFIDQLSTIEEPAKLISTVEQAIQFSQ---T----N----STSRNFTQLP 73 (486)
T ss_dssp CHHHHHHHHHHTTCGGGGTTGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTC---------------CCCEECCC
T ss_pred hHHHHHHHHHHcCcHHHhhhhccCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccc---c----c----cccccccCCC
Confidence 357899999999999999999999999999999999999 99999999986553211 0 0 1112356687
Q ss_pred CCCCCCCC--CchhhcccchHHHHHHhhhhccCcEEEEEecCCCCCCCccc-CCC---CcccCCCcchHHHHHHHHHHHH
Q 010869 375 GEGSLGPC--ARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECD-PHS---VVSESTANKSLALLQTLLSDDQ 448 (498)
Q Consensus 375 ~e~~~~~~--~~~~~~~~~~~~~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~---l~s~~~~kslfql~aerI~~lq 448 (498)
++ .+.+. .+.+.+. +|++.|+++|++||||||+||||+|||+|++ |++ +..| ++|++|++++++|.++|
T Consensus 74 ~~-~~~~~~~~~~~~~~---~~~~~G~~~i~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~-~gk~~l~~~~e~l~~~~ 148 (486)
T 2yqc_A 74 NE-QTASTLDLSKDILQ---NWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELP-SQKSLFQIQAEKILKIE 148 (486)
T ss_dssp GG-GEEETTTSCHHHHH---HHHHHHHHHHHTTCEEEEEEEESBCGGGTCSSBGGGCBCCCT-TCCBHHHHHHHHHHHHH
T ss_pred hh-hccccccCChHHHH---HHHHHHHHHHhhCCeEEEEEcCCccccCCCCCCCccceecCC-CCCcHHHHHHHHHHHHH
Confidence 75 43221 1234444 7999999999999999999999999999998 643 1222 37999999999999999
Q ss_pred HHHhh--c--CCccceEEEeCCccchHHHHHhhHhCCCCccCCCcEEEEecCC
Q 010869 449 RFVKI--E--NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVSNISESF 497 (498)
Q Consensus 449 ~La~~--~--~~~~IPwyIMTS~~T~~~T~~fF~~n~yFGL~~~qV~fF~Q~~ 497 (498)
+++.. | +.+.||||||||+.|++.|++||++|+|||++.+||+||+|+.
T Consensus 149 ~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~ 201 (486)
T 2yqc_A 149 QLAQQYLKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGT 201 (486)
T ss_dssp HHHHHHHTCSSCCCCEEEEEECGGGHHHHHHHHHHTGGGGSCGGGEEEEECCE
T ss_pred HHhhhhcCCCcCCccCEEEEECCCCHHHHHHHHhhccccCCCcceEEEEeccc
Confidence 99843 3 5688999999999999999999999999999999999999984
No 6
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=2e-34 Score=310.02 Aligned_cols=190 Identities=14% Similarity=0.162 Sum_probs=151.2
Q ss_pred HHHHHHHHHHcCCcccccccccCCHHHHHHHHHHHhcCCHHHHHHHHHhccccccccchhhhhchhhhhhhhhcccCCCC
Q 010869 297 LIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGE 376 (498)
Q Consensus 297 ~~~lk~~L~~~gQ~Hlf~fw~~L~~~er~~L~~qL~~id~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~piP~e 376 (498)
.++++++|+++||+|||+||++|+++||++|++||..+|+..+...++.+....+.++. ..++.+.+.|+|++
T Consensus 3 ~~~l~~~l~~~gQ~hl~~~~~~l~~~ek~~l~~ql~~~d~~~~~~~~~~~~~~~~~s~~-------~~~~~~~i~p~p~~ 75 (505)
T 1jv1_A 3 INDLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSH-------QKNVDARMEPVPRE 75 (505)
T ss_dssp HHHHHHHHHHTTCGGGGTTGGGSCHHHHHHHHHHHHTCCHHHHHHHHHHHHHCC------------------CCBCCCGG
T ss_pred HHHHHHHHHHcCcHHHHhhhhcCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHhhhhccc-------cCcccccccCCChH
Confidence 35689999999999999999999999999999999999999988888765543221111 00112335678775
Q ss_pred CCCCCC-CchhhcccchHHHHHHhhhhccCcEEEEEecCCCCCCCccc-CCCC-ccc-CCCcchHHHHHHHHHHHHHHHh
Q 010869 377 GSLGPC-ARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECD-PHSV-VSE-STANKSLALLQTLLSDDQRFVK 452 (498)
Q Consensus 377 ~~~~~~-~~~~~~~~~~~~~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~l-~s~-~~~kslfql~aerI~~lq~La~ 452 (498)
.+.+. .+.+.+. +|+++|+++|+.||||||+||||+|||+|++ |+++ |.. .+++++|++++++|.++|+|++
T Consensus 76 -~~~~~~~~~~~~~---~~~~~Gl~~i~~~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~ 151 (505)
T 1jv1_A 76 -VLGSATRDQDQLQ---AWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAE 151 (505)
T ss_dssp -GEEETTTTGGGHH---HHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred -hcccccCChHHHH---HHHHHhHHhhccCceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHH
Confidence 33322 2233444 7999999999999999999999999999997 6442 221 1479999999999999999985
Q ss_pred h--cCCccceEEEeCCccchHHHHHhhHhCCCCccCCCcEEEEecCC
Q 010869 453 I--ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVSNISESF 497 (498)
Q Consensus 453 ~--~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFGL~~~qV~fF~Q~~ 497 (498)
. |..+.||||||||..|++.|++||++|+|||++++||+||.|+.
T Consensus 152 ~~~G~~~~ip~vImtS~~t~e~t~~~f~~~~~fGl~~~~I~~f~Q~~ 198 (505)
T 1jv1_A 152 KYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGM 198 (505)
T ss_dssp HHHSSCCCCCEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCE
T ss_pred HhcCCCccceEEEEecCCCHHHHHHHHHhhhhcCCCcCceEEEEecc
Confidence 3 55688999999999999999999999999999999999999974
No 7
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=99.97 E-value=8.2e-32 Score=292.69 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHH--cCCccccccccc-CC--HHHHHHHHHHHhcCCHHH---HHHHHHhccccccccchhhhhchhhhhh
Q 010869 295 KRLIAAKKKLRE--MEQQHVFHGFRF-GE--KYQTSLLANHIVGINSKL---LQQALQNIEIPSKRWNATELMNATKAEL 366 (498)
Q Consensus 295 ~~~~~lk~~L~~--~gQ~Hlf~fw~~-L~--~~er~~L~~qL~~id~~~---l~~~~~~~~~s~~~~~~~~~~~~~~~~~ 366 (498)
..+.+|+++|++ +||+|||+||++ |+ ++||++|++||..||+.+ |.+.++.+.+...+ ....+.
T Consensus 7 ~~~~~L~~~l~~~~~gQ~HLf~~w~~~l~~~~~e~~~L~~qL~~~d~~~~~gl~~~~~~a~~~l~~--------~~~~~~ 78 (630)
T 3ogz_A 7 SNLQALREELCTPGLDQGHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELLAR--------ESEEVD 78 (630)
T ss_dssp HHHHHHHHHHTSTTTCCGGGGTTCCSSGGGCCHHHHHHHHHHHHGGGTSTTHHHHHHHHHHHHHHH--------HTSCCC
T ss_pred hhHHHHHHHhhhccCCchhhhhhcccccCCCHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHhhc--------cccCCc
Confidence 568899999997 999999999999 99 999999999999999543 44444322221110 000011
Q ss_pred hhhcccCCC--CCCCCCCCchhhcccchHHHHHHhhhhccCcEEEEEecCCCCCCCccc-CCC-Cccc-CCCcchHHHHH
Q 010869 367 MISSLKISG--EGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECD-PHS-VVSE-STANKSLALLQ 441 (498)
Q Consensus 367 ~~~~~piP~--e~~~~~~~~~~~~~~~~~~~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~-l~s~-~~~kslfql~a 441 (498)
++.+.|+|. ++..... +.+++. +|++.|+++|+ |||||+||||||||+||+ |++ +|.. .+++|+||+++
T Consensus 79 ~~~~~p~P~~~~~~~l~~-~~~~~~---~~~~~Gl~~i~--kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~ 152 (630)
T 3ogz_A 79 FAALEMPPLIFEAPSLHR-RTAERT---ALENAGTAMLC--KTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYL 152 (630)
T ss_dssp CSEEECCSCEEECCCTTC-CCHHHH---HHHHHHHHHGG--GEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHH
T ss_pred ccccccCCCCCccccccC-CHHHHH---HHHHHhHHHHh--hceEEEecCCcccccCCCCCcccceecCCCCCcHHHHHH
Confidence 233444443 2222212 234454 79999999998 999999999999999998 533 4442 24899999999
Q ss_pred HHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCCccCCCcEEEEecCC
Q 010869 442 TLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVSNISESF 497 (498)
Q Consensus 442 erI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFGL~~~qV~fF~Q~~ 497 (498)
++|+ +++ ++.||||||||..|++.|++||++ |||+++||+||+|+.
T Consensus 153 e~i~---~~~----g~~iPl~IMTS~~T~~~T~~~~~~---fgl~~~~V~~F~Q~~ 198 (630)
T 3ogz_A 153 RWAQ---RVG----GKEVPFVIMTSDDTHDRTLQLLRE---LQLEVPNLHVLKQGQ 198 (630)
T ss_dssp HHHH---HHH----CTTCCEEEEECTTTHHHHHHHHHH---TTCCCTTEEEEECCC
T ss_pred HHHH---HHh----CCCCcEEEEecccchHHHHHHHHH---hCCCcccEEEEEcCC
Confidence 9998 333 378999999999999999999999 999999999999975
No 8
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=99.94 E-value=1.3e-27 Score=255.90 Aligned_cols=159 Identities=15% Similarity=0.127 Sum_probs=126.5
Q ss_pred CCcccccccccCCHHHHHHHHHHHhcCCHHHHHHHHHhccccccccchhhhhchhhhhhhhhcccCCCCCCCCCCCchhh
Q 010869 308 EQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEGSLGPCARAKK 387 (498)
Q Consensus 308 gQ~Hlf~fw~~L~~~er~~L~~qL~~id~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~piP~e~~~~~~~~~~~ 387 (498)
-|.||++||++|+++||+.|.+|+.++ ...++++++. .. . ... .+.+.|+|++ .+. +-+.
T Consensus 52 ~~~~l~~~~~~l~~~~~~~~~~el~~f-~~lf~r~l~~----~~---~-----~~~---~~~i~p~p~~-~~~---~~~~ 111 (528)
T 3r3i_A 52 VKKELEKILTTASSHEFEHTKKDLDGF-RKLFHRFLQE----KG---P-----SVD---WGKIQRPPED-SIQ---PYEK 111 (528)
T ss_dssp TTSSSTTTSSSCCTTTTHHHHHHHHHH-HHHHHHHHHC----------------------CCCCCCCTT-TSE---EHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHHhh----cc---C-----CCC---HHHCcCCCHH-Hcc---CHhh
Confidence 399999999999999999999999998 4555666541 10 0 011 1456778887 433 2233
Q ss_pred cccchHHHHHHhhhhccCcEEEEEecCCCCCCCccc-CCC-CcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeC
Q 010869 388 VVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECD-PHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVL 465 (498)
Q Consensus 388 ~~~~~~~~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~-l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMT 465 (498)
+. .|++.|...++.||||||+||||||||+||+ |++ ++.+ +++|+||+++++|.++|+.. ++.|||||||
T Consensus 112 l~---~~~~~~~~~~~l~kvavvlLaGGlGTRLG~~~PK~~i~V~-sgktflql~~eqI~~l~~~~----g~~IPl~IMT 183 (528)
T 3r3i_A 112 IK---ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVR-NENTFLDLTVQQIEHLNKTY----NTDVPLVLMN 183 (528)
T ss_dssp HT---TSCCCCSSCTTCTTEEEEEECCCBCTTTTCSSBGGGSEEE-TTEEHHHHHHHHHHHHHHHH----TCCCCEEEEE
T ss_pred cC---CccccchhhhhcCceEEEEeCCCCccccCCCCCccceecC-CCCcHHHHHHHHHHHHHHHh----CCCCCEEEEe
Confidence 43 4666677789999999999999999999998 755 4444 48999999999999999765 3789999999
Q ss_pred CccchHHHHHhhHhCCCCccCCCcEEEEecCC
Q 010869 466 PALEMQMLEKLFLDNDHFAFDSKKVSNISESF 497 (498)
Q Consensus 466 S~~T~~~T~~fF~~n~yFGL~~~qV~fF~Q~~ 497 (498)
|..|++.|++||++|+||| .||+||+|+.
T Consensus 184 S~~T~~~T~~~f~k~~~fg---~~V~~F~Q~~ 212 (528)
T 3r3i_A 184 SFNTDEDTKKILQKYNHCR---VKIYTFNQSR 212 (528)
T ss_dssp CTTTHHHHHSSCGGGTTSS---CCEEEEECCC
T ss_pred ccchhHHHHHHHHhcCccC---CCeEEEEeCC
Confidence 9999999999999999999 6999999975
No 9
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=99.92 E-value=1.5e-25 Score=234.55 Aligned_cols=104 Identities=13% Similarity=0.229 Sum_probs=94.0
Q ss_pred HHHHHHhhhhccCcEEEEEecCCCCCCCccc-CCC---CcccCCCcchHHHHHHHHHHHHHHHhh---cCCccceEEEeC
Q 010869 393 SLQKKGNHLVSEGKKAMVLVVHNSEEGNECD-PHS---VVSESTANKSLALLQTLLSDDQRFVKI---ENRASMPLVLVL 465 (498)
Q Consensus 393 ~~~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~---l~s~~~~kslfql~aerI~~lq~La~~---~~~~~IPwyIMT 465 (498)
+|+++|+++|++||||||+||||+|||+|++ |++ ++.+ ++||+||+++++|+++|+|+.. +.++.|||||||
T Consensus 22 ~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~-~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMt 100 (405)
T 3oc9_A 22 EHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFE-IPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMT 100 (405)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSS-SCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEE
T ss_pred HHHHHHHHHHhcCceEEEEecCCCcccccCCCCCccccccCC-CCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEe
Confidence 7999999999999999999999999999998 633 2223 3799999999999999999853 456889999999
Q ss_pred CccchHHHHHhhHhCCCCccCCCcEEEEecCC
Q 010869 466 PALEMQMLEKLFLDNDHFAFDSKKVSNISESF 497 (498)
Q Consensus 466 S~~T~~~T~~fF~~n~yFGL~~~qV~fF~Q~~ 497 (498)
|+.|++.|++||++|+|||++++||+||+|+.
T Consensus 101 S~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~ 132 (405)
T 3oc9_A 101 NEETIEEINNYFKEHQYFGLSSEQIHCFPQGM 132 (405)
T ss_dssp CTTTHHHHHHHHHHTGGGGSCTTSEEEEECCE
T ss_pred CCccHHHHHHHHHhCcccCCCccceEEEeeCc
Confidence 99999999999999999999999999999974
No 10
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=99.87 E-value=3.4e-23 Score=220.32 Aligned_cols=94 Identities=9% Similarity=0.069 Sum_probs=86.1
Q ss_pred HHhhhhccCcEEEEEecCCCCCCCccc-CCC-CcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHH
Q 010869 397 KGNHLVSEGKKAMVLVVHNSEEGNECD-PHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLE 474 (498)
Q Consensus 397 ~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~-l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~ 474 (498)
.|+++|+ |||||+||||||||+||+ |++ ++.. +++|+||+++++|+++|+.. ++.||||||||..|+++|+
T Consensus 69 ~G~~~L~--kvavvlLaGGlGTRLG~~~pKg~~~v~-sgksflql~~eqI~~l~~~~----~~~iPl~IMTS~~T~~~T~ 141 (484)
T 3gue_A 69 ENTALLR--QAVVLKLNGGLGTGMGLNGPKSLLQVK-NGQTFLDFTALQLEHFRQVR----NCNVPFMLMNSFSTSGETK 141 (484)
T ss_dssp CCHHHHT--TEEEEEEECCCCGGGTCSSCGGGSEEE-TTEEHHHHHHHHHHHHHHHH----TCCCCEEEEECTTTHHHHH
T ss_pred HHHHHHh--hcEEEEEcCCcccccCCCCCceeeecC-CCCcHHHHHHHHHHHHHHHc----CCCceEEEECCcchhHHHH
Confidence 5999999 999999999999999997 755 3443 58999999999999999875 4789999999999999999
Q ss_pred HhhHhCCCCccCCCcEEEEecCC
Q 010869 475 KLFLDNDHFAFDSKKVSNISESF 497 (498)
Q Consensus 475 ~fF~~n~yFGL~~~qV~fF~Q~~ 497 (498)
+||++|+||||+++||+||+|+.
T Consensus 142 ~~~~k~~~Fgl~~~~v~~F~Q~~ 164 (484)
T 3gue_A 142 NFLRKYPTLYEVFDSDIELMQNR 164 (484)
T ss_dssp HHGGGCHHHHTTCCCCCEEECCC
T ss_pred HHHHhCcccCCCccceEEEEeCc
Confidence 99999999999999999999985
No 11
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=99.77 E-value=2.5e-19 Score=191.19 Aligned_cols=141 Identities=11% Similarity=0.066 Sum_probs=103.3
Q ss_pred hcCCHHHHHHHHHhccccccccchhhhhchhhhhhhhhcccCCCCCCCCCCCchhhcccchHHHHHHhhhhccCcEEEEE
Q 010869 332 VGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVL 411 (498)
Q Consensus 332 ~~id~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~piP~e~~~~~~~~~~~~~~~~~~~~~Gl~~Is~GkVavlL 411 (498)
..+|++.+.+.++....... +... .+.+.|+|++ .+.+..+.+... +|++.|++++ ||+|||+
T Consensus 22 ~~~~~~~f~~~~~~~~~~~~--------~~~~---~~~i~p~~~~-~~~~~~~~~~~~---~~~~~g~~~l--~k~~vvi 84 (469)
T 2icy_A 22 SESEKSGFISLVSRYLSGEA--------QHIE---WSKIQTPTDE-IVVPYEKMTPVS---QDVAETKNLL--DKLVVLK 84 (469)
T ss_dssp CHHHHHHHHHHHHHHC--------------CC---GGGCBCCCTT-TEEEGGGSCCCC---SCHHHHHHHH--TTEEEEE
T ss_pred chhhHHHHHHHHHHHHhccC--------CCCc---ccccccCCcc-cccChhhcccch---hhHHHHHHhh--ccceEEE
Confidence 34567777777774442210 0001 1235667775 433322211112 5788899998 7999999
Q ss_pred ecCCCCCCCccc-CCC-CcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCCccCCCc
Q 010869 412 VVHNSEEGNECD-PHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKK 489 (498)
Q Consensus 412 lAGGqg~rlG~~-p~~-l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFGL~~~q 489 (498)
||||+|||+|++ |++ +|.+ +++++|++++++|.++++.+ ++.||||||||..|++.|++||++|+|||+ +
T Consensus 85 LAGGlGTRLg~~~PK~llpv~-~gkp~Le~~i~~l~~~~~~~----G~~ip~vimts~~t~e~t~~~f~~~~~fG~---~ 156 (469)
T 2icy_A 85 LNGGLGTTMGCTGPKSVIEVR-DGLTFLDLIVIQIENLNNKY----GCKVPLVLMNSFNTHDDTHKIVEKYTNSNV---D 156 (469)
T ss_dssp EECCBSGGGTCCSBGGGSEEE-TTEEHHHHHHHHHHHHHHHH----SCCCCEEEEECTTTHHHHHHHHGGGTTSSS---C
T ss_pred EcCCccccCCCCCCccccccC-CCCCHHHHHHHHHHHHHHhc----CCCccEEEEeCCCCHHHHHHHHHhcccCCc---e
Confidence 999999999998 755 3443 38999999999999987665 377999999999999999999999999998 8
Q ss_pred EEEEecCC
Q 010869 490 VSNISESF 497 (498)
Q Consensus 490 V~fF~Q~~ 497 (498)
|.||+|+.
T Consensus 157 I~~f~Q~~ 164 (469)
T 2icy_A 157 IHTFNQSK 164 (469)
T ss_dssp EEEEECCC
T ss_pred EEEEEecc
Confidence 99999974
No 12
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=99.75 E-value=2.6e-19 Score=192.32 Aligned_cols=148 Identities=4% Similarity=-0.033 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccccccccchhhhhchhhhhhhhhcccCCCCCCCCCCCchhhcccchHHHHHHhh
Q 010869 321 KYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNH 400 (498)
Q Consensus 321 ~~er~~L~~qL~~id~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~piP~e~~~~~~~~~~~~~~~~~~~~~Gl~ 400 (498)
..++....+++...|++.+...++...... .. ... .+.+.|+ + .+.+. +.+. . ..|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~-------~i~---~~~i~p~--~-~~~~~---~~~~---~--~~g~~ 71 (505)
T 2oeg_A 14 ACVKKMRDAKVNEACIRTFIAQHVMVSKGE-TG-------SIP---DSAIMPV--D-SLDAL---DSLT---I--ECDNA 71 (505)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTC-CC-------CCC---GGGCBCC--C-CCCBG---GGCC---C--CCCHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcC-CC-------CcC---hhhcCCh--h-hccCh---hhcc---h--hHHHH
Confidence 344555566777778888888887544221 00 001 0123344 2 22211 2233 1 36999
Q ss_pred hhccCcEEEEEecCCCCCCCccc-CCC-CcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhH
Q 010869 401 LVSEGKKAMVLVVHNSEEGNECD-PHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (498)
Q Consensus 401 ~Is~GkVavlLlAGGqg~rlG~~-p~~-l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~ 478 (498)
+|+ |+|||+||||+|||+|++ |++ +|.. ++|++|++++++|.+++..+ ++.||||||||..|++.|++||+
T Consensus 72 ~l~--k~avViLAGGlGTRLg~~~PK~llpV~-~gk~fLe~~ie~l~~~~~~~----g~~ip~viMtS~~t~e~t~~~f~ 144 (505)
T 2oeg_A 72 VLQ--STVVLKLNGGLGTGMGLCDAKTLLEVK-DGKTFLDFTALQVQYLRQHC----SEHLRFMLMDSFNTSASTKSFLK 144 (505)
T ss_dssp HHH--TEEEEEEECCCCGGGTCCSCGGGSEEE-TTEEHHHHHHHHHHHHHHHT----CTTCEEEEEECHHHHHHHHHHHH
T ss_pred HHh--cceEEEEcCCcccccCCCCCCcccccC-CCCcHHHHHHHHHHHHHHhc----CCCcCEEEEeCCCCHHHHHHHHh
Confidence 999 999999999999999987 754 3433 48999999999999999876 36799999999999999999999
Q ss_pred -hCCCCccCCCcEEEEecCC
Q 010869 479 -DNDHFAFDSKKVSNISESF 497 (498)
Q Consensus 479 -~n~yFGL~~~qV~fF~Q~~ 497 (498)
+|+|||++++||+||+|+.
T Consensus 145 ~~~~~fGl~~~~I~~f~Q~~ 164 (505)
T 2oeg_A 145 ARYPWLYQVFDSEVELMQNQ 164 (505)
T ss_dssp HHCHHHHTTCCCCCEEECCC
T ss_pred hhhhccCCCccceEEEEEcC
Confidence 9999999999999999985
No 13
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.8e-17 Score=177.69 Aligned_cols=153 Identities=11% Similarity=0.060 Sum_probs=103.2
Q ss_pred cccccccCC--HHHHHHHHHHHhcCCHHHHHHHHHhccccccccchhhhhchhhhhhhhhcccCCCCCCCCCCCchhhcc
Q 010869 312 VFHGFRFGE--KYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEGSLGPCARAKKVV 389 (498)
Q Consensus 312 lf~fw~~L~--~~er~~L~~qL~~id~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~piP~e~~~~~~~~~~~~~ 389 (498)
|-++|+.+. ++||+.|.+||..+ .+.++.+...... . .... .+.+.|+|++ .+.+.. .+.
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~----~~~~---~~~i~p~~~~-~~~~~~---~~~ 81 (488)
T 2i5k_A 20 LNKLADSSKLDDAARAKFENELDSF-----FTLFRRYLVEKSS--R----TTLE---WDKIKSPNPD-EVVKYE---IIS 81 (488)
T ss_dssp TTCCC--------CCSCTHHHHHHH-----HHHHHHHHHHHHS--C----CSCC---GGGEECCCTT-TEEEHH---HHH
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHH-----HHHHHHHHhcccc--c----CCCc---ccccccCChh-cccChh---hcc
Confidence 677888877 89999999999854 3333322111000 0 0001 1235667765 333211 121
Q ss_pred cchHHHHHHhhhhccCcEEEEEecCCCCCCCccc-CCCC-cccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCc
Q 010869 390 TNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECD-PHSV-VSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPA 467 (498)
Q Consensus 390 ~~~~~~~~Gl~~Is~GkVavlLlAGGqg~rlG~~-p~~l-~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~ 467 (498)
.|. . .+++.||+|||+||||+|||+|++ |+++ +.. ++|++|++++++|.+++... ++.||||||||.
T Consensus 82 ---~~~-~--~~~~~~k~avViLAGG~GTRmgs~~PK~l~~V~-~gk~~Le~~i~~i~~l~~~~----G~~Ip~vImts~ 150 (488)
T 2i5k_A 82 ---QQP-E--NVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVR-EGNTFLDLSVRQIEYLNRQY----DSDVPLLLMNSF 150 (488)
T ss_dssp ---SSC-C--CSTTGGGEEEEEECCCBSGGGTCCSBSTTSCCB-TTBCHHHHHHHHHHHHHHHH----TCCCEEEEECCT
T ss_pred ---cch-h--hhhhcCCceEEEEcCCCcccCCCCCCccccccC-CCCcHHHHHHHHHHHhHHhc----CCCccEEEEECC
Confidence 121 2 456688999999999999999997 7653 332 38999999999998886554 378999999999
Q ss_pred cchHHHHHhhHhCCCCccCCCcEEEEecC
Q 010869 468 LEMQMLEKLFLDNDHFAFDSKKVSNISES 496 (498)
Q Consensus 468 ~T~~~T~~fF~~n~yFGL~~~qV~fF~Q~ 496 (498)
+|++.|++||++|+|||+ +|.||.|+
T Consensus 151 ~t~e~t~~~~~~~~~fg~---~i~~f~Q~ 176 (488)
T 2i5k_A 151 NTDKDTEHLIKKYSANRI---RIRSFNQS 176 (488)
T ss_dssp TTHHHHHHHHGGGCSSSC---EEEEECCC
T ss_pred CCHHHHHHHHHhccccCc---eEEEEEeC
Confidence 999999999999999998 69999998
No 14
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=95.48 E-value=0.029 Score=55.28 Aligned_cols=68 Identities=26% Similarity=0.342 Sum_probs=51.3
Q ss_pred hhccCCcEEEecCCCeEeEEEEEec---cCCCceEEEEEeecccccccCccccccCcCCCCCcEEEEecccCccceeeCC
Q 010869 179 TRDLVGMRVVMKETGELVGTVVNVF---NSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255 (498)
Q Consensus 179 ~~DLIGl~V~d~~~G~~LG~V~dV~---~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V~~VDle 255 (498)
-.||+|+.|++ .+|+.||+|.+|+ .+|.--.++|.+. ..++++|||.- +..||-+
T Consensus 148 ~~dl~G~~Vya-~DGekIG~V~Dv~vD~~sG~VrYlVVdtG------------------~ggkkVLiPi~---~~~Id~d 205 (259)
T 1eys_H 148 DPDPRGMTVVG-LDGEVAGTVSDVWVDRSEPQIRYLEVEVA------------------ANKKKVLLPIG---FSRFDKK 205 (259)
T ss_dssp SCCCTTCEEEC-SSSCEEEEEEEEEEETTTTEEEEEEEEET------------------TTCCEEEEEGG---GCEEEGG
T ss_pred CCCCcCCEEEe-CCCCeeEEEEEEEEECCCCeEEEEEEEcC------------------CCCCcEEEecC---hhhcccc
Confidence 35799999997 6899999999996 3566577888762 25789999952 5688888
Q ss_pred CCEEEE-eCCCCcc
Q 010869 256 GREMQI-TPPKGLL 268 (498)
Q Consensus 256 ~~~I~V-~~peGLL 268 (498)
++.+.| .+-..-+
T Consensus 206 ~~~V~V~~lTkeQV 219 (259)
T 1eys_H 206 ARKVKVDAIKAAHF 219 (259)
T ss_dssp GTEEECSSSCGGGG
T ss_pred CCEEEEccCCHHHH
Confidence 889998 4544433
No 15
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=94.60 E-value=0.065 Score=46.72 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=52.9
Q ss_pred ccchhccCCcEEEecCCCeEeEEEEEec-c--CCCceEEEEEeecccccccCccccccCcCCCCCcEEEEecccCcccee
Q 010869 176 EFYTRDLVGMRVVMKETGELVGTVVNVF-N--SGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252 (498)
Q Consensus 176 EfY~~DLIGl~V~d~~~G~~LG~V~dV~-~--~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V~~V 252 (498)
-+-..||+|..|++ .+|+.||+|.||+ + +|.-.-++|...+-. ..+++.++||+-.- .+
T Consensus 14 l~~~~~l~G~~V~~-~dG~~iG~V~dv~iD~~~G~i~~~vv~~Ggfl--------------G~g~~~v~ip~~~l---~~ 75 (120)
T 3htr_A 14 LIGSDKVQGTAVYG-PDGEKIGSIERVMIEKVSGRVSYAVLSFGGFL--------------GIGDDHYPLPWPAL---KY 75 (120)
T ss_dssp EEEHHHHTTCEEEC-TTSCEEEEEEEEEEETTTCBEEEEEEEESSBT--------------TBSCEEEEECGGGC---EE
T ss_pred eEehhhccCCEEEc-CCCCEEEEEEEEEEECCCCcEEEEEEECCCcc--------------CcCCEEEEeCHHHe---EE
Confidence 36678999999997 5899999999996 3 455555777652111 01457899999852 58
Q ss_pred eCCCCEEEEeCCCCcc
Q 010869 253 DMNGREMQITPPKGLL 268 (498)
Q Consensus 253 Dle~~~I~V~~peGLL 268 (498)
|.+++.+.+...+.-|
T Consensus 76 ~~~~~~~~v~~tkeql 91 (120)
T 3htr_A 76 NVELGGYQVMVTVDQL 91 (120)
T ss_dssp ETTTTEEECCCCHHHH
T ss_pred ecCCCEEEeCCCHHHH
Confidence 8888888776655444
No 16
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=90.99 E-value=0.4 Score=40.18 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=28.4
Q ss_pred ccch-hccCCcEEEecCCCeEeEEEEEec-c--CCCceEEEEE
Q 010869 176 EFYT-RDLVGMRVVMKETGELVGTVVNVF-N--SGANDLLHVM 214 (498)
Q Consensus 176 EfY~-~DLIGl~V~d~~~G~~LG~V~dV~-~--~ga~DlL~V~ 214 (498)
-... .+|.|++|++ .+|+.||+|.|+. + +|.-.-++|.
T Consensus 20 ~Mr~~seL~Gk~Vin-~dG~~LG~V~Dv~iD~~~G~I~~lvl~ 61 (97)
T 1pm3_A 20 HMRIVEEMVGKEVLD-SSAKVIGKVKDVEVDIESQAIESLVLG 61 (97)
T ss_dssp CEETTTTSSSCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEeehhCCCCEeEC-CCCCEEeEEEEEEEECCCCEEEEEEEc
Confidence 3555 7999999998 7999999999994 3 4544445554
No 17
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=90.38 E-value=0.16 Score=53.65 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=51.2
Q ss_pred cCcEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh-CC
Q 010869 404 EGKKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD-ND 481 (498)
Q Consensus 404 ~GkVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~-n~ 481 (498)
.+.+|||+||||.|||+.-. |+- -.|..+|.++++.-+.+ .+.+-+ -.+|+|+ +..+..++||.+ -+
T Consensus 10 ~~~~~vvILAaG~GtRm~~~~pK~-l~pv~gkp~i~~~l~~~------~~~g~~---~i~vv~~-~~~~~i~~~~~~~~~ 78 (501)
T 3st8_A 10 PGDTAVLVLAAGPGTRMRSDTPKV-LHTLAGRSMLSHVLHAI------AKLAPQ---RLIVVLG-HDHQRIAPLVGELAD 78 (501)
T ss_dssp --CEEEEEEECSCCGGGCCSSCGG-GCEETTEEHHHHHHHHH------HHHCCS---EEEEEEC-TTHHHHHHHHHHHHH
T ss_pred CCCceEEEECCcCcccCCCCCCHH-HeEECChhHHHHHHHHH------HhCCCC---EEEEEeC-CCHHHHHHHHHHHHH
Confidence 47899999999999999755 532 12345788887776633 322311 2356665 567888999986 45
Q ss_pred CCccCCCcEEEEecC
Q 010869 482 HFAFDSKKVSNISES 496 (498)
Q Consensus 482 yFGL~~~qV~fF~Q~ 496 (498)
.|| .+|.|..|+
T Consensus 79 ~~~---~~i~~~~q~ 90 (501)
T 3st8_A 79 TLG---RTIDVALQD 90 (501)
T ss_dssp HHT---SCCEEEECS
T ss_pred hcC---CcEEEEEcC
Confidence 566 356677765
No 18
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=89.17 E-value=0.45 Score=45.51 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=41.0
Q ss_pred CcEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhH
Q 010869 405 GKKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (498)
Q Consensus 405 GkVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~ 478 (498)
|++++|+||||.|+|.|.+ |+.+ .+..|+++++.-.+++.+.. ..=..+|.|+....+..++++.
T Consensus 6 ~~~~aIIlAaG~g~Rmg~~~~K~l-~~l~Gkpll~~~l~~~~~~~--------~~~~ivVv~~~~~~~~~~~~~~ 71 (231)
T 3q80_A 6 GEVVAIVPAAGSGERLAVGVPKAF-YQLDGQTLIERAVDGLLDSG--------VVDTVVVAVPADRTDEARQILG 71 (231)
T ss_dssp CCEEEEEECCCCCTTTCSSSCGGG-CEETTEEHHHHHHHHHHHTS--------CCCEEEEEECGGGHHHHHHHHG
T ss_pred CceEEEEECCCCCccCCCCCCceE-EEECCeEHHHHHHHHHHhCC--------CCCeEEEECChHHHHHHHHHhc
Confidence 4789999999999999875 4322 22357999888777543211 1113456666655555555554
No 19
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=88.39 E-value=0.87 Score=44.75 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=43.6
Q ss_pred hccCCcEEEecCCCeEeEEEEEec-cC--CCceEEEEEeecccccccCccccccCcCCCCCcEEEEecccCccceeeCCC
Q 010869 180 RDLVGMRVVMKETGELVGTVVNVF-NS--GANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256 (498)
Q Consensus 180 ~DLIGl~V~d~~~G~~LG~V~dV~-~~--ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V~~VDle~ 256 (498)
.|+.|+.|+. .+|+.+|+|.|++ +- +---.|+|++ +.++.+|||+.- ..||-
T Consensus 146 ~d~~G~~Vyg-~DGe~iGsV~Dl~VD~~eg~VRYLVVdt-------------------GggrkVLLP~~~---~riD~-- 200 (260)
T 1rzh_H 146 KNPIGLPVRG-CDLEIAGKVVDIWVDIPEQMARFLEVEL-------------------KDGSTRLLPMQM---VKVQS-- 200 (260)
T ss_dssp CCCTTCEEEE-TTSCEEEEEEEEEEETTTTEEEEEEEEC-------------------TTSCEEEEEGGG---CEECS--
T ss_pred CCCCCCEeEc-CCCCeeEEEEEEEEECCCCEEEEEEEEe-------------------CCCCEEEeeeEE---EEEcC--
Confidence 4899999997 5899999999994 43 4445777776 257899999874 45565
Q ss_pred CEEEEe
Q 010869 257 REMQIT 262 (498)
Q Consensus 257 ~~I~V~ 262 (498)
+.+.|+
T Consensus 201 ~~VyV~ 206 (260)
T 1rzh_H 201 NRVHVN 206 (260)
T ss_dssp SCEEES
T ss_pred CeEEEe
Confidence 677773
No 20
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=88.06 E-value=0.84 Score=45.01 Aligned_cols=67 Identities=9% Similarity=-0.068 Sum_probs=38.4
Q ss_pred cEEEEEecCCCCCCCc-----ccCCCCcccC-CCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 406 KKAMVLVVHNSEEGNE-----CDPHSVVSES-TANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 406 kVavlLlAGGqg~rlG-----~~p~~l~s~~-~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
++.+|+||||.|+|++ ..|+.+ .|. .++++++...+++.+. + =..+|+|.....+..++++.+
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~l-l~i~gg~pli~~~l~~l~~~--~--------~~i~vv~~~~~~~~i~~~~~~ 72 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQF-LKLFDHKSLFELSFKRNASL--V--------DETLIVCNEKHYFLALEEIKN 72 (308)
T ss_dssp CEEEEEECC-------------CCGGG-CTTBTTBCHHHHHHHHHHTT--C--------SEEEEEEEGGGHHHHHHHTTT
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEE-EECCCCCCHHHHHHHHHHcc--C--------CCEEEEEChhHHHHHHHHHHH
Confidence 4678889999999994 124321 123 3799998888765432 1 245788887666778888876
Q ss_pred CCCCcc
Q 010869 480 NDHFAF 485 (498)
Q Consensus 480 n~yFGL 485 (498)
. ||+
T Consensus 73 ~--~~~ 76 (308)
T 2qh5_A 73 E--IKN 76 (308)
T ss_dssp T--CSS
T ss_pred h--hCC
Confidence 4 565
No 21
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=87.70 E-value=0.84 Score=44.84 Aligned_cols=59 Identities=25% Similarity=0.276 Sum_probs=44.0
Q ss_pred hccCCcEEEecCCCeEeEEEEEec-c--CCCceEEEEEeecccccccCccccccCcCCCCCcEEEEecccCccceeeCCC
Q 010869 180 RDLVGMRVVMKETGELVGTVVNVF-N--SGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256 (498)
Q Consensus 180 ~DLIGl~V~d~~~G~~LG~V~dV~-~--~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V~~VDle~ 256 (498)
.|+.|+.|+. .+|+.+|+|.|++ + +|---.|+|++. ..++.+|||+.- ..||-
T Consensus 150 ~D~~G~~Vyg-~DGe~iGsV~Dl~VD~~eg~VRYLVVdtG------------------gggrkVLLP~~~---~riD~-- 205 (258)
T 2wjn_H 150 VDPRGLPVVA-ADGVEAGTVTDLWVDRSEHYFRYLELSVA------------------GSARTALIPLGF---CDVKK-- 205 (258)
T ss_dssp CCCTTCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEEET------------------TTTEEEEEEGGG---CEECS--
T ss_pred CCCCCCEeEc-CCCCeeEEEEEEEEECCCCEEEEEEEEcC------------------CCCCEEEeeeEE---EEEcC--
Confidence 4899999996 6899999999994 4 344467888761 257899999874 45555
Q ss_pred CEEEEe
Q 010869 257 REMQIT 262 (498)
Q Consensus 257 ~~I~V~ 262 (498)
+.+.|+
T Consensus 206 ~~VyV~ 211 (258)
T 2wjn_H 206 DKIVVT 211 (258)
T ss_dssp SCEECC
T ss_pred CeEEEe
Confidence 667773
No 22
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=85.00 E-value=0.77 Score=42.19 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=27.3
Q ss_pred cEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
++.+|+||||.|+|+|.. |+.+ .|..|+++++...+++.
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~l-~~~~g~pli~~~l~~l~ 41 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKAF-VTLGGTPLLEHALSGLR 41 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGGG-SEETTEEHHHHHHHHHH
T ss_pred ceEEEEECCccCcccCCCCCCee-eEECCeEHHHHHHHHHh
Confidence 477899999999999832 3322 12347899888777554
No 23
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=84.79 E-value=1.4 Score=43.22 Aligned_cols=77 Identities=8% Similarity=0.092 Sum_probs=46.8
Q ss_pred cEEEEEecCCCCCCCcc----cCCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCC
Q 010869 406 KKAMVLVVHNSEEGNEC----DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 481 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~----~p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~ 481 (498)
++.+|+||||.|+|++- .|+.+ .|..+|++++...+.+. ..+ + =..+|+|++...+..++++.+..
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~l-lpi~gkpli~~~l~~l~------~~g--i-~~I~vv~~~~~~~~i~~~l~~g~ 71 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQL-LPVYDKPMIYYPLSTLM------LAG--I-REILIISTPQDTPRFQQLLGDGS 71 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGG-SEETTEETTHHHHHHHH------HTT--C-CEEEEEECTTTHHHHHHHHTTSG
T ss_pred CceEEEECCCCCCcCccccCCCCcee-CeECCEeHHHHHHHHHH------HCC--C-CEEEEEeccccHHHHHHHHhccc
Confidence 35677889999999971 13221 22347888887777443 212 1 12356676666677888888755
Q ss_pred CCccCCCcEEEEec
Q 010869 482 HFAFDSKKVSNISE 495 (498)
Q Consensus 482 yFGL~~~qV~fF~Q 495 (498)
.||++ |.+..|
T Consensus 72 ~~g~~---i~~~~~ 82 (293)
T 1fxo_A 72 NWGLD---LQYAVQ 82 (293)
T ss_dssp GGTCE---EEEEEC
T ss_pred ccCce---EEEeeC
Confidence 56753 544444
No 24
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=83.79 E-value=1.5 Score=42.02 Aligned_cols=78 Identities=4% Similarity=-0.037 Sum_probs=49.9
Q ss_pred CcEEEEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhC
Q 010869 405 GKKAMVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (498)
Q Consensus 405 GkVavlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n 480 (498)
.++.+|++|||.|+|++- . |+.+ .|..++++++...+++.+ .+ .=..+|.|.....+...+++.+.
T Consensus 23 ~~m~aiIlAaG~g~Rl~~lt~~~pK~l-l~i~g~pli~~~l~~l~~------~g---~~~iivv~~~~~~~~~~~~~~~~ 92 (269)
T 4ecm_A 23 NAMKGIILAGGTGSRLYPITKVTNKHL-LPVGRYPMIYHAVYKLKQ------CD---ITDIMIITGKEHMGDVVSFLGSG 92 (269)
T ss_dssp -CEEEEEECCSCCGGGTTTTSSSCGGG-SEETTEEHHHHHHHHHHH------TT---CCEEEEEECTTTHHHHHHHHTTS
T ss_pred cCcEEEEECCCCccccccccCCCCcee-cEECCEEHHHHHHHHHHH------CC---CCEEEEECChhhHHHHHHHHhhc
Confidence 467889999999999853 2 3321 123579998888875432 12 11356777765567788888876
Q ss_pred CCCccCCCcEEEEec
Q 010869 481 DHFAFDSKKVSNISE 495 (498)
Q Consensus 481 ~yFGL~~~qV~fF~Q 495 (498)
..||+ +|.+..|
T Consensus 93 ~~~~~---~i~~~~~ 104 (269)
T 4ecm_A 93 QEFGV---SFTYRVQ 104 (269)
T ss_dssp GGGTC---EEEEEEC
T ss_pred cccCc---eEEEeeC
Confidence 67775 3544444
No 25
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=82.03 E-value=1.3 Score=42.15 Aligned_cols=38 Identities=3% Similarity=-0.083 Sum_probs=21.8
Q ss_pred cEEEEEecCCCCCCCcc-c-CCCCcccCCCcchHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNEC-D-PHSVVSESTANKSLALLQTLL 444 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~-~-p~~l~s~~~~kslfql~aerI 444 (498)
++.+|+||||+|+|.|. + |+.+ .|..|+++++...+++
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~l-~~l~Gkpll~~~l~~~ 42 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQF-LPLNGKPIIVHTVEKF 42 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGGG-SEETTEEHHHHHHHHH
T ss_pred ccEEEEECCccccccCCCCCCCeE-EEECCeeHHHHHHHHH
Confidence 57889999999999987 4 4322 2235789888777654
No 26
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=82.01 E-value=1.2 Score=40.87 Aligned_cols=39 Identities=5% Similarity=0.009 Sum_probs=27.9
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSD 446 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~ 446 (498)
++++|+||||.|+|.|.++--++ ..|+++++...+++.+
T Consensus 2 ~~~~iIlAgG~g~Rmg~~K~l~~--i~g~pll~~~l~~l~~ 40 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGGDKLLAK--IDNTPIIMRTIRIYGD 40 (197)
T ss_dssp CEEEEEECSCCTTCCCSSGGGSB--SSSSBHHHHHHHHTTT
T ss_pred ceEEEEECCcCcccCCCCeeeCE--eCceEHHHHHHHHHHh
Confidence 46789999999999986421122 3479999888776543
No 27
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=81.05 E-value=1.1 Score=41.42 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 405 GKKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 405 GkVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
.++.+|+||||.|+|+|-+ |+.+ .+..|+++++...+++.
T Consensus 5 ~~~~aiIlA~G~g~R~~~~~~K~l-~~~~gkpli~~~l~~l~ 45 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGADKPKQY-VEIGSKTVLEHVLGIFE 45 (231)
T ss_dssp CCEEEEEECC----------CCSC-CEETTEEHHHHHHHHHH
T ss_pred CceEEEEEcccccccCCCCCCceE-eEECCeEHHHHHHHHHH
Confidence 5688999999999999863 4332 12347999988877554
No 28
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=80.96 E-value=2.3 Score=41.85 Aligned_cols=76 Identities=8% Similarity=0.073 Sum_probs=46.2
Q ss_pred EEEEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCC
Q 010869 407 KAMVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDH 482 (498)
Q Consensus 407 VavlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~y 482 (498)
+.+|+||||.|+|++= . |+.+ .|..+|++++...+.+. ..+ . =..+|+|++...+..++++.+...
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~l-lpi~gkpli~~~l~~l~------~~g--i-~~Iivv~~~~~~~~i~~~l~~g~~ 73 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQL-LPIYDKPMIYYPLSVLM------LAG--I-RDILIISTPRDLPLYRDLLGDGSQ 73 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGG-SEETTEETTHHHHHHHH------HTT--C-CEEEEEECTTTHHHHHHHHTTSGG
T ss_pred eEEEEECCCCCCccccccCCCCcee-cEECCeeHHHHHHHHHH------HCC--C-CeEEEEeccchHHHHHHHhhhccc
Confidence 5678899999999972 1 3211 23347888887776443 212 1 123566666666778888877555
Q ss_pred CccCCCcEEEEec
Q 010869 483 FAFDSKKVSNISE 495 (498)
Q Consensus 483 FGL~~~qV~fF~Q 495 (498)
||+ +|.+..|
T Consensus 74 ~g~---~i~~~~~ 83 (295)
T 1lvw_A 74 FGV---RFSYRVQ 83 (295)
T ss_dssp GTS---EEEEEEC
T ss_pred cCc---eEEEeeC
Confidence 675 3544444
No 29
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=80.73 E-value=3.4 Score=38.48 Aligned_cols=60 Identities=5% Similarity=-0.014 Sum_probs=37.3
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
++.+|++|||.|+|+| |+.+ .|..|+++++...+++.+. + ..=..+|.|.. +...+++.+
T Consensus 2 ~~~aiIlA~G~~~R~~--~K~l-~~i~g~pli~~~i~~~~~~------~--~~~~ivvv~~~---~~i~~~~~~ 61 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP--GKPL-LDIVGKPMIQHVYERALQV------A--GVAEVWVATDD---PRVEQAVQA 61 (245)
T ss_dssp CEEEEEECCSCCSSST--TGGG-CEETTEEHHHHHHHHHHTC------T--TCCEEEEEESC---HHHHHHHHH
T ss_pred CeEEEEEcCCcCCCCC--CCcc-cccCCchHHHHHHHHHHhC------C--CCCeEEEECCc---HHHHHHHHH
Confidence 5788999999999997 4321 1234799988877754321 1 11145666653 556666665
No 30
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=80.54 E-value=1 Score=40.75 Aligned_cols=61 Identities=2% Similarity=-0.045 Sum_probs=35.5
Q ss_pred EEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 408 AMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 408 avlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
.+|+||||.|+|+|-.|+.+ .|..|+++++...+++.+. + .=..||.|+.. .+.+++++.+
T Consensus 2 ~aiIlA~G~s~R~~~~~K~l-~~~~g~pli~~~l~~l~~~------~---~~~v~vv~~~~-~~~i~~~~~~ 62 (196)
T 3rsb_A 2 DALIMAGGKGTRMGGVEKPL-IKLCGRCLIDYVVSPLLKS------K---VNNIFIATSPN-TPKTKEYINS 62 (196)
T ss_dssp EEEEEC----CGGGGSCGGG-CEETTEEHHHHHHHHHHSS------S---CCCEEEECCTT-CHHHHHHHHH
T ss_pred EEEEECCCCCCcCCCCCccE-EEECCEEHHHHHHHHHHHC------C---CCEEEEEeCCC-hHHHHHHHHh
Confidence 46889999999998422211 1234799988887754321 1 12457788766 5677888877
No 31
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=79.66 E-value=1.5 Score=39.24 Aligned_cols=62 Identities=8% Similarity=0.002 Sum_probs=37.5
Q ss_pred CcEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhH
Q 010869 405 GKKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (498)
Q Consensus 405 GkVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~ 478 (498)
-++.+|+||||.|+|+|.+.--++ ..|+++++...+++.+. + .=..+|.|... .+..++++.
T Consensus 4 ~~~~~iIlA~G~~~R~g~~K~l~~--~~g~pll~~~l~~l~~~------~---~~~i~vv~~~~-~~~~~~~~~ 65 (197)
T 2wee_A 4 TQITGVVLAAGRSNRLGTPKQLLP--YRDTTVLGATLDVARQA------G---FDQLILTLGGA-ASAVRAAMA 65 (197)
T ss_dssp SEEEEEEEECCCCTTTSSCGGGSE--ETTEEHHHHHHHHHHHT------T---CSEEEEEECTT-HHHHHHHSC
T ss_pred CceEEEEECCCCcccCCCCeEcCe--eCCccHHHHHHHHHHhc------C---CCcEEEEeCCC-HHHHHHHhc
Confidence 357889999999999985421123 24789888777755321 1 11345666543 344555544
No 32
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=79.47 E-value=1.7 Score=42.94 Aligned_cols=76 Identities=7% Similarity=0.078 Sum_probs=46.6
Q ss_pred EEEEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCC
Q 010869 407 KAMVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDH 482 (498)
Q Consensus 407 VavlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~y 482 (498)
+.+|+||||.|+|++- . |+.+ .|..+|++++...+.+. ..+- =..+|+|++...+..++++.+...
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~l-lpi~gkpli~~~l~~l~------~~gi---~~I~vv~~~~~~~~i~~~l~~g~~ 73 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQL-LPIYDKPMIYYPLSVLM------LAGI---REILIITTPEDKGYFQRLLGDGSE 73 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGG-SEETTEETTHHHHHHHH------HTTC---CEEEEEECTTTHHHHHHHHTTSGG
T ss_pred cEEEEECCCCCCcCCcccCCCCcee-eEECCeeHHHHHHHHHH------hCCC---CcEEEEechhHHHHHHHHHhcccc
Confidence 4578899999999971 1 3221 22347898887776443 1121 134566666666778888877555
Q ss_pred CccCCCcEEEEec
Q 010869 483 FAFDSKKVSNISE 495 (498)
Q Consensus 483 FGL~~~qV~fF~Q 495 (498)
||++ |.+..|
T Consensus 74 ~g~~---i~~~~~ 83 (296)
T 1mc3_A 74 FGIQ---LEYAEQ 83 (296)
T ss_dssp GTCE---EEEEEC
T ss_pred cCce---EEEecc
Confidence 6753 545444
No 33
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=79.18 E-value=1.7 Score=40.36 Aligned_cols=37 Identities=8% Similarity=0.075 Sum_probs=27.0
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~ 445 (498)
++++|+||||.|+|+| |+.+ .|..|+++++...+++.
T Consensus 4 ~~~aiIlA~G~g~R~~--~K~l-~~i~gkpll~~~l~~~~ 40 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP--LKNL-RKMNGISLLGHTINAAI 40 (228)
T ss_dssp EEEEEEECCSSCSSST--TTTT-CEETTEEHHHHHHHHHH
T ss_pred ceEEEEecCCCCCCCC--Cccc-ceeCCcCHHHHHHHHHH
Confidence 4788999999999998 4322 22347999988777554
No 34
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=79.04 E-value=1.8 Score=36.40 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=25.1
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEEEe
Q 010869 138 QKSWILTFEGIDTVEQARPLVGSTLLAR 165 (498)
Q Consensus 138 ~~~~ivkf~GId~re~Ae~L~G~~l~v~ 165 (498)
.+..|||++||+|+++|+-|.|..+..-
T Consensus 19 ~~~aLlkIegV~~k~~a~fYlGKrvayv 46 (95)
T 1sqr_A 19 NNVMIIKPLDVNSREEASKLIGRLVLWK 46 (95)
T ss_dssp CCEEEEEESCCCCHHHHHHHTTCEEEEC
T ss_pred CceEEEEEcCCCCHHHHHhhcCCeEEEE
Confidence 4688999999999999999999998663
No 35
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=78.49 E-value=1.5 Score=40.57 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=23.2
Q ss_pred cEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
++.+|+||||.|+|+|.+ |+.+ .|..|+++++...+++.
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~l-~~i~g~pli~~~l~~l~ 43 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQY-IPLLGQPIALYSFFTFS 43 (228)
T ss_dssp CEEEEEECCCCC-------CGGG-SEETTEEHHHHHHHHHH
T ss_pred ceEEEEECCccccccCCCCCccE-eEECCEEHHHHHHHHHH
Confidence 578899999999999853 4322 22357999888777543
No 36
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=78.47 E-value=2.1 Score=35.43 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.7
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEEE
Q 010869 138 QKSWILTFEGIDTVEQARPLVGSTLLA 164 (498)
Q Consensus 138 ~~~~ivkf~GId~re~Ae~L~G~~l~v 164 (498)
.+..|||++||+|+++|+-|.|..+..
T Consensus 19 ~~taLlkieGV~~~~~a~fylGKrvay 45 (87)
T 3j21_c 19 NNVMIIKPLDVNSREEASKLIGRLVLW 45 (87)
T ss_dssp TTCEEEEESSCCSHHHHGGGTTCEEEE
T ss_pred CCeEEEEEcCcCCHHHHHhhcCceEEE
Confidence 467899999999999999999998876
No 37
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=78.10 E-value=1.1 Score=41.69 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=27.7
Q ss_pred cEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
-+.+|+||||.|+|+|.+ |+.+ .|..|+++++...+++.
T Consensus 13 ~~~aiILAaG~s~Rm~~~~~K~l-~~i~Gkpli~~~i~~l~ 52 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQF-LEIEGRMLFEYPLSTFL 52 (234)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGG-CEETTEETTHHHHHHHH
T ss_pred cCeEEEEcCcchhhcCCCCCceE-EEECCeEHHHHHHHHHH
Confidence 467899999999999863 4322 23357999888777553
No 38
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=77.67 E-value=1.3 Score=41.32 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=28.2
Q ss_pred cEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
++.+|+||||.|+|+|.+ |+.+ .|..|+++++...+++.
T Consensus 7 ~~~~iIlA~G~g~R~~~~~~K~l-~~i~g~pll~~~i~~l~ 46 (236)
T 1i52_A 7 DVCAVVPAAGFGRRMQTECPKQY-LSIGNQTILEHSVHALL 46 (236)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGG-SEETTEEHHHHHHHHHH
T ss_pred ceeEEEECCcCccccCCCCCcce-eeECCEEHHHHHHHHHH
Confidence 578899999999999843 4322 12347999988887654
No 39
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=76.83 E-value=1.9 Score=38.60 Aligned_cols=62 Identities=6% Similarity=-0.085 Sum_probs=37.6
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
++.+|+||||.|+|+|.+.--++ ..|+++++...+++... + .=..+|.|+.. .+..++++.+
T Consensus 5 ~~~~iIlA~G~~~R~g~~K~l~~--~~g~pli~~~l~~l~~~------~---~~~i~vv~~~~-~~~~~~~~~~ 66 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLGTPKQLLP--LGDTTLLGATLAMARRC------P---FDQLIVTLGGA-ADEVLEKVEL 66 (199)
T ss_dssp CEEEEEEESSCCTTTTSCGGGCE--ETTEEHHHHHHHHHHTS------S---CSEEEEEECTT-HHHHHHHSCC
T ss_pred ceEEEEECCCCCCCCCCCEEeCE--eCccCHHHHHHHHHHhC------C---CCcEEEEeCCC-HHHHHHHhcc
Confidence 57889999999999984421123 24789888777644321 1 11456666643 3455555543
No 40
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=75.80 E-value=7.8 Score=37.95 Aligned_cols=79 Identities=8% Similarity=-0.099 Sum_probs=47.7
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhCCCCcc
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 485 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n~yFGL 485 (498)
++.+|+||||.|+|++-..--+|....++++++...+++.+ .+ .=..+|+|.....+..+++|.+..-++
T Consensus 5 ~~~~vIlAaG~g~R~~~~K~l~~ig~~g~pli~~~l~~~~~------~~---~~~i~vv~~~~~~~~~~~~~~~~~~~~- 74 (303)
T 3pnn_A 5 KPTLFVLAAGMGSRYGSLKQLDGIGPGGDTIMDYSVYDAIR------AG---FGRLVFVIRHSFEKEFREKILTKYEGR- 74 (303)
T ss_dssp CCEEEEECTTCBCTTSSBCCCCCCSTTSCCHHHHHHHHHHH------HT---CCEEEEEECGGGHHHHHHHTHHHHTTT-
T ss_pred ceEEEEECCCCcccCCCCceEeEcCCCCeeHHHHHHHHHHH------CC---CCeEEEEcCchHHHHHHHHHHHHhccC-
Confidence 46788999999999975311122210368888777774432 12 113467777655688888887643333
Q ss_pred CCCcEEEEecC
Q 010869 486 DSKKVSNISES 496 (498)
Q Consensus 486 ~~~qV~fF~Q~ 496 (498)
-+|.+..|+
T Consensus 75 --~~i~~~~~~ 83 (303)
T 3pnn_A 75 --IPVELVFQE 83 (303)
T ss_dssp --SCEEEEECC
T ss_pred --CcEEEEecc
Confidence 245565554
No 41
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=75.45 E-value=2.7 Score=39.47 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=35.7
Q ss_pred EEEEEecCCCCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhC
Q 010869 407 KAMVLVVHNSEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n 480 (498)
+.+|+||||.|+|++-- |+.+ .|..|+++++...+++. +.+ .=..+|+|+.. .+..+++|.+.
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~l-~~i~gkpli~~~l~~l~------~~g---~~~i~vv~~~~-~~~i~~~~~~~ 69 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPM-VEIGGKPILWHIMKMYS------VHG---IKDFIICCGYK-GYVIKEYFANY 69 (259)
T ss_dssp CEEEEEECSCC--------CCCGGG-CEETTEEHHHHHHHHHH------HTT---CCEEEEEECTT-HHHHHHHHHTH
T ss_pred cEEEEECCCCcccCCCccCCCCccc-cEECCEEHHHHHHHHHH------HCC---CCEEEEEcccC-HHHHHHHHhhc
Confidence 56788999999999742 3321 22357898887766443 212 12457888654 36788888763
No 42
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=75.00 E-value=2.3 Score=39.07 Aligned_cols=38 Identities=8% Similarity=-0.038 Sum_probs=27.6
Q ss_pred cEEEEEecCCCCCCCc-ccCCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNE-CDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG-~~p~~l~s~~~~kslfql~aerI~ 445 (498)
++.+|+||||.|+|.| .++--++ ..|+++++...+++.
T Consensus 6 ~~~~iILAgG~s~Rmg~~~K~ll~--i~G~pli~~~l~~l~ 44 (201)
T 1e5k_A 6 TITGVVLAGGKARRMGGVDKGLLE--LNGKPLWQHVADALM 44 (201)
T ss_dssp SEEEEEECCCCCSSSCSSCGGGSE--ETTEEHHHHHHHHHH
T ss_pred cceEEEEcCCCCCcCCCCCCceee--ECceeHHHHHHHHHH
Confidence 5888999999999998 3321123 347999988877654
No 43
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=74.90 E-value=2.4 Score=43.48 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=40.5
Q ss_pred CcEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 405 GKKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 405 GkVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
-++.+|+||||.|+|+|-+ |+.+ .|..++++++...+++.+. + .=..+|.|... .+..++++.+
T Consensus 7 ~~~~aiIlA~G~g~Rl~~~~pK~l-~~i~g~pli~~~l~~l~~~------~---~~~i~vv~~~~-~~~i~~~~~~ 71 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYSDLPKVL-HPLAGKPMVQHVIDAAMKL------G---AQHVHLVYGHG-GELLKKTLAD 71 (459)
T ss_dssp CCEEEEEEECCCCGGGCCSSCGGG-SEETTEEHHHHHHHHHHHH------T---CSCEEEEESSC-HHHHHHHC--
T ss_pred CcceEEEECCCCCccCCCCCCccc-CeeCCeeHHHHHHHHHHhC------C---CCcEEEEeCCC-HHHHHHHhcc
Confidence 3789999999999999864 4332 2335799998888865432 1 11345666544 5666666654
No 44
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=73.91 E-value=2.3 Score=36.48 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=23.9
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEEE
Q 010869 138 QKSWILTFEGIDTVEQARPLVGSTLLA 164 (498)
Q Consensus 138 ~~~~ivkf~GId~re~Ae~L~G~~l~v 164 (498)
.+..|||++||+|+++|+-+.|..+..
T Consensus 25 ~~taLlKIeGV~~~~~a~fylGKrvay 51 (107)
T 3izc_j 25 PNVSLIKIEGVATPQDAQFYLGKRIAY 51 (107)
T ss_dssp CCEEEEEESSCSTTHHHHTTCCCCCCC
T ss_pred CCeEEEEEcCcCCHHHHHhhcCCEEEE
Confidence 467999999999999999999997654
No 45
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=73.27 E-value=3 Score=36.07 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=38.6
Q ss_pred ceEEEEecCCCCHHHHhcccCCeEEE-eCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEe
Q 010869 139 KSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (498)
Q Consensus 139 ~~~ivkf~GId~re~Ae~L~G~~l~v-~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~ 215 (498)
+..|||++||+++++|+-|.|..+.. -+..-. -|-.+. ...|+|+....+. .+...+.
T Consensus 33 ~taLlKIeGV~~~~~a~fylGKrvayvykak~~------------~g~k~R-----viwGKVtR~HGns--GvVrAkF 91 (113)
T 4a18_H 33 NQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKK------------NGSNYR-----TIWGRIGKAHGNN--GVAVARF 91 (113)
T ss_dssp EEEEEEETTCCSHHHHHTTTTCEEEEEEEEEEE------------TTEEEE-----EEEEEEEEEETTT--TEEEEEE
T ss_pred CeEEEEEcCcCCHHHHHhhcCCeEEEEEecCCC------------CCCeEE-----EEEEEEEeeeCCC--CeEEEEe
Confidence 57899999999999999999997764 322210 121211 3579998886553 3554554
No 46
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=72.85 E-value=2.7 Score=38.85 Aligned_cols=38 Identities=5% Similarity=0.074 Sum_probs=27.3
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSD 446 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~ 446 (498)
++.+|++|||.|+|+| |+.+ .|..|+++++...+++.+
T Consensus 2 ~~~aiIlA~G~g~R~~--~K~l-~~i~g~pli~~~l~~~~~ 39 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK--EKPL-KNLLGKPLIRWVVEGLVK 39 (234)
T ss_dssp CEEEEEECCSCCTTTT--TGGG-CEETTEEHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCCCC--CCcc-eeECCEEHHHHHHHHHHH
Confidence 4778999999999998 3321 123479999888776543
No 47
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=72.13 E-value=2.4 Score=42.61 Aligned_cols=63 Identities=8% Similarity=0.047 Sum_probs=37.2
Q ss_pred EEEEecCCCCCCCc----cc-CCCCcccCCC-cchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 408 AMVLVVHNSEEGNE----CD-PHSVVSESTA-NKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 408 avlLlAGGqg~rlG----~~-p~~l~s~~~~-kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
.+|+||||.|+|++ -. |+.+ .|..+ ++++|...+++..+. + .=..+|.|........++++.+
T Consensus 3 ~~VILAgG~GtRl~Pls~~~~pK~l-l~l~g~~pli~~~l~~l~~~~-----~---~~~iivvt~~~~~~~i~~~l~~ 71 (336)
T 2x65_A 3 KALILAGGSGERFWPLSTPETPKQF-LKLFGNKSLMRWTFERVLEEM-----D---PKDVIVVTHKDYVERTKKELPE 71 (336)
T ss_dssp EEEEECCCBCGGGTTTSCTTCBGGG-CCCBTTBCHHHHHHHHHHTTC-----C---GGGEEEEEEGGGHHHHHHHCTT
T ss_pred EEEEECCCCCccCCCCcCCCCCceE-EECCCCCcHHHHHHHHHhccC-----C---CCcEEEEcChHHHHHHHHHhhc
Confidence 46789999999996 22 4321 12235 999998888664321 0 0123566665545556666554
No 48
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=71.61 E-value=3 Score=38.43 Aligned_cols=64 Identities=9% Similarity=-0.045 Sum_probs=31.3
Q ss_pred EEEEEecCCCCCCCcc-c-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 407 KAMVLVVHNSEEGNEC-D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 407 VavlLlAGGqg~rlG~-~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
+.+|+||||.|+|+|- + |+.+ .|..|+++++...+++.+. + ..=..+|.|+....+..++++.+
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~l-~~i~g~pli~~~l~~l~~~------~--~~~~i~vv~~~~~~~~~~~~~~~ 68 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQF-LELGDRPILIHTIEKFVLE------P--SIEKIVVGVHGDWVSHAEDLVDK 68 (236)
T ss_dssp EEEEEEEC-----------CGGG-SEETTEEHHHHHHHHHHTC------T--TCCCEEEEECGGGHHHHHHHHHH
T ss_pred eEEEEeCCccccccCCCCCCCee-eeeCCccHHHHHHHHHHcC------C--CCCeEEEEeCHHHHHHHHHHHHh
Confidence 5678899999999986 2 3321 1234789888777744321 1 01134667766654556666654
No 49
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=71.37 E-value=2.4 Score=39.57 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=31.5
Q ss_pred EEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCc
Q 010869 407 KAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPA 467 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~ 467 (498)
+.+|+||||.|+|.|.++--++ ..|+++++...+++.. . +.+|.|..
T Consensus 1 m~aiILAgG~s~Rmg~~K~ll~--~~G~pli~~~~~~l~~----------~--~vvvv~~~ 47 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIGMEKTEVM--LCGKKLIEWVLEKYSP----------F--QTVFVCRD 47 (208)
T ss_dssp CEEEEECCCCCTTTTSCGGGCE--ETTEEHHHHHHHHHTT----------S--EEEEECSS
T ss_pred CEEEEECCCchhhCCCCCcccE--ECCeeHHHHHHHHhcC----------C--CEEEEECC
Confidence 3578899999999994421133 3479998877775431 1 66778753
No 50
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=70.56 E-value=3.1 Score=39.13 Aligned_cols=37 Identities=5% Similarity=0.008 Sum_probs=20.3
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTL 443 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aer 443 (498)
++++|+||||.|+|+|..|+.+ .|..|+++++...++
T Consensus 25 ~~~aiILAgG~s~Rm~~~~K~l-~~i~gkpli~~~l~~ 61 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGRGPKAF-LQVGGRTLLEWTLAA 61 (236)
T ss_dssp CCEEEEECCC-------CCGGG-CBCSSSBHHHHHHHH
T ss_pred ceEEEEEcCCCCccCCCCCCeE-EEECCEEHHHHHHHh
Confidence 5778999999999998533221 123479999887775
No 51
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=67.41 E-value=3.4 Score=35.57 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=40.0
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEE-EeCCCCCCCCCCccchhccCCcEEEecCCCeEeEEEEEeccCCCceEEEEEe
Q 010869 138 QKSWILTFEGIDTVEQARPLVGSTLL-AREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (498)
Q Consensus 138 ~~~~ivkf~GId~re~Ae~L~G~~l~-v~~~dlp~L~edEfY~~DLIGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~ 215 (498)
.+..|||++||+|+++|+-|.|..+. |-+..-+. . | + ..-...|+|+....+.. +...+.
T Consensus 29 ~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~--~---------g----~-k~R~iwGKVtR~HGnsG--vVrAkF 89 (111)
T 3iz5_j 29 ENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS--N---------D----S-TIRCIWGKVTRPHGNSG--VVRAKF 89 (111)
T ss_dssp CCEEEEEESSCSTTHHHHTTSCCCCEECCCCCSSS--C---------C----C-CSCCEECEEEEESSSSS--CEEEEC
T ss_pred CCeEEEEEcCcCCHHHHHhhcCcEEEEEEeccccC--C---------C----c-eEEEEEEEEEeeeCCCC--EEEEEe
Confidence 46899999999999999999999764 55544321 1 1 1 12245788888865542 444444
No 52
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=66.73 E-value=4.5 Score=38.48 Aligned_cols=37 Identities=5% Similarity=0.041 Sum_probs=27.0
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~ 445 (498)
|+.+|++|||.|+|++-.+ -.|..||++++...+++.
T Consensus 2 ~~~aiIlA~G~stRlp~K~---L~~i~GkPli~~~l~~l~ 38 (252)
T 3oam_A 2 SFTVVIPARYQSTRLPGKP---LADIGGKPMIQWVYEQAM 38 (252)
T ss_dssp CEEEEEECCCCCSSSTTGG---GCEETTEEHHHHHHHHHH
T ss_pred ceEEEEecCcCCCCCCCcc---eeeECCEEHHHHHHHHHH
Confidence 5789999999999996222 123357999988888654
No 53
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=66.17 E-value=3 Score=41.84 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=26.3
Q ss_pred EEEEEecCCCCCCCc-----ccCCC-CcccCCC-cchHHHHHHHHHH
Q 010869 407 KAMVLVVHNSEEGNE-----CDPHS-VVSESTA-NKSLALLQTLLSD 446 (498)
Q Consensus 407 VavlLlAGGqg~rlG-----~~p~~-l~s~~~~-kslfql~aerI~~ 446 (498)
+.+|+||||.|+|+. -.|+. ++. .| ++++|...+++..
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l--~G~~pli~~~l~~l~~ 47 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPFLPL--FEGKTLLEATLERLAP 47 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGGCBC--GGGCBHHHHHHHHHTT
T ss_pred eEEEEEcCCCcccCCccCCCCCCceEEEc--CCCChHHHHHHHHHhC
Confidence 567889999999983 22432 232 35 8999988886653
No 54
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=65.22 E-value=6.3 Score=40.21 Aligned_cols=40 Identities=8% Similarity=0.053 Sum_probs=28.4
Q ss_pred CcEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 405 GKKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 405 GkVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
-++.+|+||||.|+|++-. |+.+ .|..++++++...+++.
T Consensus 4 ~~~~aiIlA~G~g~Rl~~~~pK~l-~~i~gkpli~~~l~~l~ 44 (456)
T 2v0h_A 4 KALSAVILAAGKGTRMYSDLPKVL-HTIAGKPMVKHVIDTAH 44 (456)
T ss_dssp CCEEEEEECCCCCGGGCSSSCGGG-SEETTEEHHHHHHHHHH
T ss_pred CcceEEEECCCCCcccCCCCCccc-cEECCccHHHHHHHHHH
Confidence 4688899999999999843 4321 12347899888877554
No 55
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=64.35 E-value=4.3 Score=37.70 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~ 445 (498)
++.+|+||||.|+|+|-.|+.+ .|..|+++++...+++.
T Consensus 18 ~~~~iIlA~G~g~R~~~~~K~l-~~i~g~pli~~~l~~l~ 56 (232)
T 2xme_A 18 LMKAVILAAGLGTRLGGVPKPL-VRVGGCEIILRTMKLLS 56 (232)
T ss_dssp CEEEEEEECC------CCCGGG-CEETTEEHHHHHHHHHG
T ss_pred cceEEEECCcCcCcCCCCCcEE-eEECCEEHHHHHHHHHH
Confidence 5788999999999997533221 12347898888777554
No 56
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=63.21 E-value=11 Score=36.08 Aligned_cols=63 Identities=10% Similarity=0.011 Sum_probs=40.0
Q ss_pred EEEEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhC
Q 010869 407 KAMVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (498)
Q Consensus 407 VavlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n 480 (498)
+.+|+||||.|+|++- . |+.+ .|..|+++++...+++.+ .| .=..+|.|+ ...+..+++|.+.
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~l-l~i~gkpli~~~l~~l~~------~g---i~~i~vv~~-~~~~~i~~~~~~~ 69 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKEM-LPIVDKPLIQYAVEEAME------AG---CEVMAIVTG-RNKRSLEDYFDTS 69 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGGG-CBSSSSBHHHHHHHHHHH------HT---CCEEEEEEC-TTHHHHHHHTSCC
T ss_pred eEEEEECCcCCcccCccccCCCccc-ceECCEEHHHHHHHHHHh------CC---CCEEEEEec-CCHHHHHHHHhcc
Confidence 4578899999999853 2 3321 234578999888875542 12 113455665 4568888998764
No 57
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=60.32 E-value=5.7 Score=38.38 Aligned_cols=38 Identities=0% Similarity=-0.057 Sum_probs=24.9
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSD 446 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~ 446 (498)
++.+|++|||.|+|++-.+ + .|..||++++...+++.+
T Consensus 9 ~~~aIIlA~G~stRl~~K~--L-~~i~GkPli~~~l~~l~~ 46 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLPGKA--L-VDIAGKPMIQHVYESAIK 46 (256)
T ss_dssp CCEEEEECCCC---CTTGG--G-CEETTEEHHHHHHHHHHH
T ss_pred CceEEEEcCCCCCCCCCCC--e-eeECCchHHHHHHHHHHh
Confidence 6889999999999997222 1 223579999888886653
No 58
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=60.04 E-value=6.4 Score=37.34 Aligned_cols=37 Identities=3% Similarity=-0.027 Sum_probs=26.2
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~ 445 (498)
++.+|+||||.|+|+|-.+. + |..|+++++...+++.
T Consensus 2 ~~~aiIlA~G~g~R~~~K~l-~--~~~gkpli~~~l~~l~ 38 (262)
T 1vic_A 2 SFTVIIPARFASSRLPGKPL-A--DIKGKPMIQHVFEKAL 38 (262)
T ss_dssp CCEEEEECCCCCSSSTTGGG-C--EETTEEHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCCCCCCcc-c--cCCCeEHHHHHHHHHH
Confidence 46789999999999973221 2 2347899888777554
No 59
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=59.89 E-value=4.9 Score=38.26 Aligned_cols=39 Identities=5% Similarity=0.124 Sum_probs=27.0
Q ss_pred cEEEEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI~ 445 (498)
++.+|+||||.|+|++- . |+.+ .|..|+++++...+++.
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l-~~i~gkpli~~~l~~l~ 67 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKAL-VQVNQKPLIEYQIEFLK 67 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGG-CEETTEEHHHHHHHHHH
T ss_pred CceEEEECCCCcccCCcccCCCCCEE-eeECCEEHHHHHHHHHH
Confidence 57788899999999872 2 4321 12357899988877554
No 60
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=59.24 E-value=11 Score=32.15 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=28.3
Q ss_pred CCcEEEecCCCeEeEEEEEeccCCCceEEEEEe
Q 010869 183 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (498)
Q Consensus 183 IGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~ 215 (498)
+|..||| ++++.+|+|.|||..=.+..+.|+.
T Consensus 33 ~na~Vy~-enk~~IGKV~DIfGPV~~pY~sVKp 64 (104)
T 2hvy_B 33 LNDRVVD-KRLQFVGIVKDVFGPVKMPYVAIKP 64 (104)
T ss_dssp TTCEEEC-TTCCEEEEEEEEEEESSSCEEEEEE
T ss_pred CCCEeEc-CCCCEeEEEEEEECCCCCcEEEEEe
Confidence 5889997 7888999999999988888888887
No 61
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=58.90 E-value=9.2 Score=35.47 Aligned_cols=38 Identities=8% Similarity=0.010 Sum_probs=27.5
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSD 446 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~ 446 (498)
++++|++|||.|+|++-.+. ++ ..|+++++...+++.+
T Consensus 3 ~~~aiIlA~G~s~R~~~K~l-~~--i~Gkpli~~~i~~~~~ 40 (229)
T 1qwj_A 3 HLAALVLARGGSKGIPLKNI-KR--LAGVPLIGWVLRAALD 40 (229)
T ss_dssp CEEEEEECCSCCSSSSCTTT-SE--ETTEEHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCCCCCCccc-ce--ECCEEHHHHHHHHHHh
Confidence 67889999999999963321 22 3479999888776543
No 62
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=58.16 E-value=8 Score=39.42 Aligned_cols=68 Identities=3% Similarity=-0.062 Sum_probs=42.8
Q ss_pred cEEEEEecCCCCCCCc---cc-CCCCcccCCCc-chHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHhC
Q 010869 406 KKAMVLVVHNSEEGNE---CD-PHSVVSESTAN-KSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (498)
Q Consensus 406 kVavlLlAGGqg~rlG---~~-p~~l~s~~~~k-slfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~n 480 (498)
++.+|+||||.|+|++ .. |+.+ .|..++ ++++...+++.+ .+- =..+|.|.. ..+..+++|.+.
T Consensus 12 ~~~avILAaG~gtRl~plT~~~pK~l-lpi~gk~pli~~~l~~l~~------~gi---~~i~vv~~~-~~~~i~~~~~~~ 80 (420)
T 3brk_X 12 DAMAYVLAGGRGSRLKELTDRRAKPA-VYFGGKARIIDFALSNALN------SGI---RRIGVATQY-KAHSLIRHLQRG 80 (420)
T ss_dssp GEEEEEEECCCCGGGGGGGSSSCGGG-SEETTTEETHHHHHHHHHH------TTC---CEEEEEECT-TCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCccchhhcCCcccc-cccCCCCcHHHHHHHHHHh------CCC---CeEEEEeCC-ChHHHHHHHhhh
Confidence 5778899999999997 22 3321 123467 888887775432 121 134677764 357788888774
Q ss_pred CCCccC
Q 010869 481 DHFAFD 486 (498)
Q Consensus 481 ~yFGL~ 486 (498)
||++
T Consensus 81 --~~~~ 84 (420)
T 3brk_X 81 --WDFF 84 (420)
T ss_dssp --SCCC
T ss_pred --hccc
Confidence 5653
No 63
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=57.60 E-value=2.1 Score=39.27 Aligned_cols=16 Identities=0% Similarity=-0.060 Sum_probs=14.2
Q ss_pred cEEEEEecCCCCCCCc
Q 010869 406 KKAMVLVVHNSEEGNE 421 (498)
Q Consensus 406 kVavlLlAGGqg~rlG 421 (498)
++++|+||||.|+|.|
T Consensus 14 ~~~~iILA~G~g~Rmg 29 (201)
T 2e8b_A 14 VNTCYVLAGGKSKRFG 29 (201)
T ss_dssp CCEEEEEEESSCCCCS
T ss_pred CceEEEECCCCCccCC
Confidence 4778999999999998
No 64
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=57.43 E-value=7.6 Score=39.76 Aligned_cols=39 Identities=5% Similarity=0.034 Sum_probs=28.4
Q ss_pred cEEEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
++++|+||||.|+|+|.. |+.+ .+..|+++++...+++.
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~l-l~l~GkPLi~~~l~~l~ 42 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQF-LRLGNDPLWLYATKNLS 42 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGGG-CEEBTEEHHHHHHHHHH
T ss_pred ccEEEEECCCCCccCCCCCCcce-EEECCeEHHHHHHHHHH
Confidence 578899999999999853 4322 22347999988887654
No 65
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=57.12 E-value=9.9 Score=30.90 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=28.5
Q ss_pred CCcEEEecCCCeEeEEEEEeccCCCceEEEEEe
Q 010869 183 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (498)
Q Consensus 183 IGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~ 215 (498)
+|..|+| ++++.+|+|.||+..=.+..+.|+.
T Consensus 33 ~na~Vy~-e~~~~IGkV~dIfGPv~~pY~sVk~ 64 (82)
T 2ey4_C 33 LNDRVVD-KRLQFVGIVKDVFGPVKMPYVAIKP 64 (82)
T ss_dssp TTCEEEC-TTCCCCEEEEEEEEESSSCEEEEEE
T ss_pred CCCEeEc-CCCCEeEEEEEEECCCCCcEEEEEe
Confidence 5889997 7888999999999988888899987
No 66
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=56.22 E-value=7.8 Score=37.54 Aligned_cols=38 Identities=3% Similarity=0.059 Sum_probs=27.1
Q ss_pred cEEEEEecCCCCCCCcccCCCCcccCCCcchHHHHHHHHHH
Q 010869 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSD 446 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~aerI~~ 446 (498)
++.+|++|||.|+|++-.+ -.|..||++++...+++.+
T Consensus 18 ~~~aIIlA~G~stRlp~K~---L~~i~GkPmi~~~l~~l~~ 55 (264)
T 3k8d_A 18 SFVVIIPARYASTRLPGKP---LVDINGKPMIVHVLERARE 55 (264)
T ss_dssp CCEEEEECCSCCSSSTTGG---GCEETTEEHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCCCCCcc---eeeECCeEHHHHHHHHHHh
Confidence 5788999999999996222 1223579998888876543
No 67
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=52.41 E-value=39 Score=29.12 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=27.9
Q ss_pred CCcEEEecCCCeEeEEEEEeccCCCceEEEEEee
Q 010869 183 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMCY 216 (498)
Q Consensus 183 IGl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~ 216 (498)
.+..|++ ++.+.||+|.||+..-.+..+.|+..
T Consensus 53 fNapVy~-enK~~IGKVdEIFGPin~~YfsVK~~ 85 (114)
T 3u28_C 53 FNAPIYL-ENKTQVGKVDEILGPLNEVFFTIKCG 85 (114)
T ss_dssp TTCEEEC-TTCCEEEEEEEEESBTTSCEEEEEEC
T ss_pred CCCEeEc-cCCccceeEeEEeCCCCccEEEEEec
Confidence 4778997 78889999999999887888888873
No 68
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=52.24 E-value=7.3 Score=32.66 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=24.7
Q ss_pred eEEEEEEeeeeeeeeeEEEEeccCCcc
Q 010869 77 FVDVGYVYSVHGLQGEISVKPSTDFPE 103 (498)
Q Consensus 77 ~v~IG~I~~~HGlkGevkV~~~tD~pe 103 (498)
.+..|+|.++||-.|.|+++.....|-
T Consensus 51 rviwGKVtR~HGnsGvVrAkF~~nLP~ 77 (95)
T 1sqr_A 51 KILKGKIVRVHGTKGAVRARFEKGLPG 77 (95)
T ss_dssp CCEEEEEEEESSSSSCEEEECSSCCSS
T ss_pred CEEEEEEEeeeCCCCEEEEEeCCCCCh
Confidence 689999999999999999998887776
No 69
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=50.80 E-value=8.9 Score=31.64 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=23.7
Q ss_pred EEEEEEeeeeeeeeeEEEEeccCCcc
Q 010869 78 VDVGYVYSVHGLQGEISVKPSTDFPE 103 (498)
Q Consensus 78 v~IG~I~~~HGlkGevkV~~~tD~pe 103 (498)
+..|+|.++||-.|.|+.+..+..|-
T Consensus 52 ~iwGKVtr~HGnsGvVrAkF~~nLP~ 77 (87)
T 3j21_c 52 ILKGKIVRVHGTKGAVRARFEKGLPG 77 (87)
T ss_dssp CEEEEEEEECCSSSCEEEEESSCCCS
T ss_pred EEEEEEEeeeCCCCeEEEEeCCCCCh
Confidence 67999999999999999998887776
No 70
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=50.17 E-value=11 Score=32.55 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=26.4
Q ss_pred eEEEEEEeeeeeeeeeEEEEeccCCcccccc
Q 010869 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFT 107 (498)
Q Consensus 77 ~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~ 107 (498)
.+..|+|.++||-.|-|+.+.....|--.|.
T Consensus 71 RviwGKVtR~HGnsGvVrAkF~~nLP~kA~G 101 (113)
T 4a18_H 71 RTIWGRIGKAHGNNGVAVARFAHNLPPQAIG 101 (113)
T ss_dssp EEEEEEEEEEETTTTEEEEEESSCCCGGGGG
T ss_pred EEEEEEEEeeeCCCCeEEEEeCCCCChHHcC
Confidence 4788999999999999999999888863443
No 71
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=43.56 E-value=11 Score=38.66 Aligned_cols=63 Identities=5% Similarity=-0.074 Sum_probs=32.1
Q ss_pred cEEEEEecCCCCCCCc---cc-CCCCcccCCCc-chHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 406 KKAMVLVVHNSEEGNE---CD-PHSVVSESTAN-KSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 406 kVavlLlAGGqg~rlG---~~-p~~l~s~~~~k-slfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
++.+|+||||.|+|++ .. |+.+ .|..++ ++++...+++.+ .+- =..+|+|... .+..+++|.+
T Consensus 20 ~~~avILAaG~gtRl~plT~~~pK~l-lpi~g~~pli~~~l~~l~~------~g~---~~i~vv~~~~-~~~i~~~~~~ 87 (451)
T 1yp2_A 20 SVLGIILGGGAGTRLYPLTKKRAKPA-VPLGANYRLIDIPVSNCLN------SNI---SKIYVLTQFN-SASLNRHLSR 87 (451)
T ss_dssp HEEEEEC------CCTTTTTTSCGGG-CEETTTEETTHHHHHHHHH------TTC---CEEEEEESCC-CHHHHHHHHH
T ss_pred ceEEEEECCCCCCcccchhcCCccee-eEECCcceeHHHHHHHHHH------CCC---CEEEEEeccC-HHHHHHHHhh
Confidence 3678999999999997 22 4321 233467 888877775432 121 1346666543 4566677764
No 72
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=42.53 E-value=12 Score=32.18 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=26.9
Q ss_pred eEEEEEEeeeeeeeeeEEEEeccCCccccccC
Q 010869 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTT 108 (498)
Q Consensus 77 ~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~ 108 (498)
.+..|+|.++||-.|.|+.+..+..|--.|..
T Consensus 69 R~iwGKVtR~HGnsGvVrAkF~~nLP~kA~G~ 100 (111)
T 3iz5_j 69 RCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGK 100 (111)
T ss_dssp CCEECEEEEESSSSSCEEEECSSCCSTTCCSS
T ss_pred EEEEEEEEeeeCCCCEEEEEeCCCCChHHcCC
Confidence 47899999999999999999998888644543
No 73
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=40.55 E-value=7 Score=37.36 Aligned_cols=35 Identities=9% Similarity=0.027 Sum_probs=23.5
Q ss_pred EEEecCCCCCCCcc---c-CCCCcccCCCcchHHHHHHHH
Q 010869 409 MVLVVHNSEEGNEC---D-PHSVVSESTANKSLALLQTLL 444 (498)
Q Consensus 409 vlLlAGGqg~rlG~---~-p~~l~s~~~~kslfql~aerI 444 (498)
+|+||||.|+|++- + |+.+ .|..||++++..-+++
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~l-lpv~gkpli~~~l~~l 40 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYM-LEAHGQTLFEHSVNSF 40 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGG-CEETTEEHHHHHHGGG
T ss_pred EEEEcCCCCcccccCCCCCCccc-cEECCeEHHHHHHHHH
Confidence 57889999999853 2 4321 1345789888777744
No 74
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=40.19 E-value=16 Score=33.94 Aligned_cols=39 Identities=5% Similarity=0.074 Sum_probs=25.2
Q ss_pred cEEEEEecCCC---CCCCcccCCCCcccCCCcchHHHHHHHHH
Q 010869 406 KKAMVLVVHNS---EEGNECDPHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 406 kVavlLlAGGq---g~rlG~~p~~l~s~~~~kslfql~aerI~ 445 (498)
++.+|+||||. ++|.|..|+.+ .|..|+++++...+++.
T Consensus 2 ~~~~vIlAaG~tRl~~r~~~~~K~l-~~i~g~pll~~~l~~l~ 43 (232)
T 2dpw_A 2 RPSAIVLAGGKEAWAERFGVGSKAL-VPYRGRPMVEWVLEALY 43 (232)
T ss_dssp CCEEEEECCCBCSGGGTTTCSBGGG-SEETTEETHHHHHHHHH
T ss_pred ceeEEEECCCCCccccccCCCCcee-eEECCEEHHHHHHHHHH
Confidence 46788899999 66665323221 12347999888777554
No 75
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=38.52 E-value=21 Score=34.35 Aligned_cols=63 Identities=11% Similarity=-0.031 Sum_probs=37.5
Q ss_pred cEEEEEecCCCCCCCcc----cCCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 406 KKAMVLVVHNSEEGNEC----DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~----~p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
.+.+|+||||.|+|++- .|+.+ .|..|+++++...+++.+ .+ + =..+|.|... .+..+++|.+
T Consensus 14 ~~~avIlAaG~gtRl~plt~~~pK~l-l~i~gkpli~~~l~~l~~------~g--~-~~i~vv~~~~-~~~i~~~~~~ 80 (297)
T 2ux8_A 14 LRKAVFPVAGLGTRFLPATKAMPKEM-LPVVDRPLIQYAVDEAVE------AG--I-EQMIFVTGRG-KSALEDHFDI 80 (297)
T ss_dssp CCEEEEEECCCCGGGTTTTSSSCGGG-CEETTEEHHHHHHHHHHH------TT--C-CEEEEEECTT-CHHHHHHTSC
T ss_pred ccEEEEECCCCccccCccccCCCcee-eeECCeEHHHHHHHHHHh------CC--C-CEEEEEeCCC-HHHHHHHHhh
Confidence 45677889999999852 13221 123478998887775432 12 1 1235666543 5677777764
No 76
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=36.54 E-value=23 Score=34.08 Aligned_cols=63 Identities=14% Similarity=0.047 Sum_probs=38.8
Q ss_pred cEEEEEecCCCCCCCccc----CCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 406 KKAMVLVVHNSEEGNECD----PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 406 kVavlLlAGGqg~rlG~~----p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
.+.+|+||||.|+|++-- |+.+ .|..|+++++...+++.+ .+ + =..+|.|... .+..+++|.+
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~l-l~i~gkpli~~~l~~l~~------~g--i-~~i~vv~~~~-~~~i~~~~~~ 74 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEM-LPLVDKPLIQYVVNECIA------AG--I-TEIVLVTHSS-KNSIENHFDT 74 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGG-CEETTEEHHHHHHHHHHH------TT--C-CEEEEEECGG-GHHHHHHHSC
T ss_pred ccEEEEECCcCcccCCccccCCCcee-eEECCeEHHHHHHHHHHH------CC--C-CEEEEEeCCC-HHHHHHHHhc
Confidence 356788899999998631 3221 233578998887775432 12 1 1346677653 5677777764
No 77
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=33.44 E-value=12 Score=31.93 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=26.6
Q ss_pred eEEEEEEeeeeeeeeeEEEEeccCCccccccC
Q 010869 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTT 108 (498)
Q Consensus 77 ~v~IG~I~~~HGlkGevkV~~~tD~pe~~f~~ 108 (498)
.+..|+|.++||-.|.|+.+..+..|--.|..
T Consensus 65 RviwGKVtR~HGnsGvVrAkF~~nLP~kA~G~ 96 (107)
T 3izc_j 65 RVMWGKVTRTHGNSGVVRATFRNNLPAKTFGA 96 (107)
T ss_dssp CCCCCCEEECSSSSSCEEECCCSCCSTTCCSS
T ss_pred EEEEEEEEeeeCCCCeEEEEeCCCCChHHcCC
Confidence 47789999999999999999988888644443
No 78
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=31.17 E-value=23 Score=36.20 Aligned_cols=37 Identities=8% Similarity=0.125 Sum_probs=25.2
Q ss_pred EEEEecCCCCCCCccc-CCCCcccCCCcchHHHHHHHHH
Q 010869 408 AMVLVVHNSEEGNECD-PHSVVSESTANKSLALLQTLLS 445 (498)
Q Consensus 408 avlLlAGGqg~rlG~~-p~~l~s~~~~kslfql~aerI~ 445 (498)
-+|+||||.|+|++-. |+.+ .|..++++++...+++.
T Consensus 13 ~~vIlAaG~g~R~~~~~pK~l-~~i~gkpli~~~l~~l~ 50 (468)
T 1hm9_A 13 FAIILAAGKGTRMKSDLPKVL-HKVAGISMLEHVFRSVG 50 (468)
T ss_dssp EEEEECCCCCGGGCCSSCGGG-SEETTEEHHHHHHHHHH
T ss_pred cEEEEcCCCCccCCCCCCcEe-eEECCccHHHHHHHHHH
Confidence 3577889999999743 4321 23357899988877654
No 79
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=30.76 E-value=29 Score=34.00 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=35.3
Q ss_pred EEEEEecCCCCCCCcc----cCCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhH
Q 010869 407 KAMVLVVHNSEEGNEC----DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (498)
Q Consensus 407 VavlLlAGGqg~rlG~----~p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~ 478 (498)
+.+|+||||.|+|++- .|+.+ .|..|+++++...+++.+ .+ + =..+|.|+.. .+..+++|.
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~l-l~i~gkpli~~~l~~l~~------~g--i-~~iivv~~~~-~~~i~~~~~ 77 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKEL-LPVVDTPGIELIAAEAAE------LG--A-TRLAIITAPN-KAGVLAHFE 77 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGG-CEETTEEHHHHHHHHHHH------TT--C-CEEEEEECTT-CHHHHHTTS
T ss_pred eEEEEECCCCccccCccccCCCcee-eeECCEEHHHHHHHHHHh------CC--C-CEEEEEecCc-HHHHHHHHh
Confidence 5678889999999863 13321 223478998887775542 12 1 1235555543 455566554
No 80
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.07 E-value=56 Score=27.44 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=28.1
Q ss_pred CcEEEecCCCeEeEEEEEeccCCCceEEEEEee
Q 010869 184 GMRVVMKETGELVGTVVNVFNSGANDLLHVMCY 216 (498)
Q Consensus 184 Gl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~ 216 (498)
|--|++ ++.+.+|+|.|||..=.+..+.|+..
T Consensus 53 ~s~l~~-edk~~IGkV~EiFGpV~~PyysVk~~ 84 (103)
T 2eqn_A 53 ETVIFK-SDRQAAGKIFEIFGPVAHPFYVLRFN 84 (103)
T ss_dssp TCEEEC-TTSBEEEEEEEEESCSSSCEEEECCS
T ss_pred CCEEEe-cCCcEEEEEEEEECCCCCCEEEEEeC
Confidence 777886 68899999999999999999999973
No 81
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=29.06 E-value=29 Score=34.60 Aligned_cols=58 Identities=10% Similarity=0.114 Sum_probs=34.2
Q ss_pred EEEEecCCCCCCCc----ccCCCCcccCCCcchHHHHHHHHHHHHHHHhhcCCccceEEEeCCccchHHHHHhhHh
Q 010869 408 AMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (498)
Q Consensus 408 avlLlAGGqg~rlG----~~p~~l~s~~~~kslfql~aerI~~lq~La~~~~~~~IPwyIMTS~~T~~~T~~fF~~ 479 (498)
.+|+||||.|+|++ -.|+.+ .|..++++++...+++.+. + .=..+|.|+.. .++++.+
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~l-l~i~g~pli~~~l~~l~~~------~---~~~i~vv~~~~----i~~~~~~ 63 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAF-VPILSKPLIEYQIEYLRKC------G---IRDITVIVSSK----NKEYFEK 63 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGG-CEETTEEHHHHHHHHHHHT------T---CCEEEEEECGG----GHHHHHH
T ss_pred eEEEEcCcCccccCcccCCCCcce-eeECCEeHHHHHHHHHHHC------C---CCEEEEEeCHH----HHHHhhc
Confidence 46889999999985 113321 1234789988877754321 1 11346666655 5555554
No 82
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=26.36 E-value=39 Score=32.25 Aligned_cols=36 Identities=11% Similarity=-0.028 Sum_probs=25.9
Q ss_pred EEEEEecCCCCCCCcccCCCCcccCCCcchHHHHH-HHHH
Q 010869 407 KAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQ-TLLS 445 (498)
Q Consensus 407 VavlLlAGGqg~rlG~~p~~l~s~~~~kslfql~a-erI~ 445 (498)
+.+|++|||.|+|++-.+. .+..||++++... +++.
T Consensus 2 ~~aiIlA~G~stR~~~K~L---~~i~GkPli~~~i~~~~~ 38 (253)
T 4fcu_A 2 KHIVIPARFSSSRLPGKPL---LLIHDRPMILRVVDQAKK 38 (253)
T ss_dssp EEEEEECCSCCTTSTTGGG---SEETTEEHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCCCCCce---eeECCeEhHHHHHHHHHH
Confidence 4678899999999874331 2235799998888 7654
No 83
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Probab=23.98 E-value=65 Score=28.26 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=35.0
Q ss_pred CcEEEecCCCeEeEEEEEeccCCCceEEEEEeecccccccCccccccCcCCCCCcEEEEecccCccceeeCC
Q 010869 184 GMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255 (498)
Q Consensus 184 Gl~V~d~~~G~~LG~V~dV~~~ga~DlL~V~~~~~~~~~~~~~~~~~~~~~~~gkevLIPfv~e~V~~VDle 255 (498)
|--|+. ++++.+|+|.+||..=.+..|.|+..++.. ...+......+.+-++.|-...||-...+.
T Consensus 60 ~s~l~l-edr~~IGkV~EiFGpV~~P~ysVk~~~~~~-----e~i~~~~~~~G~kvY~~~~~s~fv~t~~~~ 125 (131)
T 2v3m_A 60 GSIFCL-EDRTLIGMLTEVFGPLQNPFYRIKLPDSKK-----NLFDELKVRLGEKAFIVTPDAHWIDTFELK 125 (131)
T ss_dssp TCEEEE-TTCCEEEECCEEESCSSSCEEEEECCGGGH-----HHHHHHHTTTTSEEEEEC------------
T ss_pred CCEEEe-cCCcEEEEEEEEeCCCCCcEEEEEeCCcch-----hhhhhcccCCCCEEEECcCccceEechhhc
Confidence 667776 788999999999999999999999843200 000000112344556677777777655543
No 84
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=22.93 E-value=1.4e+02 Score=23.13 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccccccCCHHHHHHHHHHHhcCCHHHHHHHHH
Q 010869 291 KKFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQ 344 (498)
Q Consensus 291 ~~~~~~~~~lk~~L~~~gQ~Hlf~fw~~L~~~er~~L~~qL~~id~~~l~~~~~ 344 (498)
||-...+..|++.|. ....++..++..|+..+ ++.-..|+.+|+
T Consensus 10 ~~~~~Ql~~LE~~F~---------~~~YPs~~er~eLA~~t-gLt~~qVkvWFq 53 (66)
T 3nau_A 10 KKTKEQIAHLKASFL---------QSQFPDDAEVYRLIEVT-GLARSEIKKWFS 53 (66)
T ss_dssp -CCHHHHHHHHHHHH---------GGGSCCHHHHHHHHHHH-CCCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHh---------cCCCCCHHHHHHHHHHh-CcCHHHhhHhcc
Confidence 444444555666554 45689999999999999 889899999998
Done!