BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010871
(498 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 152/309 (49%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 47 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 105 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 163
Query: 308 IKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ S H + G L+ G ++ SG ++ PV
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 217
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 218 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 264
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 265 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 322
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 323 NDKTIKLWK 331
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 152/309 (49%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 49 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 107 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 165
Query: 308 IKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ S H + G L+ G ++ SG ++ PV
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 219
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 220 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 266
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 267 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 324
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 325 NDKTIKLWK 333
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 157/334 (47%), Gaps = 28/334 (8%)
Query: 164 QPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV 223
Q + P P + AV+ +KF + + LA ++D + + D K
Sbjct: 17 QGTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KF 74
Query: 224 IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHP 282
K ++GH ++D +SS++ + S+S DKT+++W+++ G C++ + G S+ + C F+P
Sbjct: 75 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 134
Query: 283 VNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSI 341
+N +S G+ ++ + +++ TG+ +K L S+ S H + G L+ G
Sbjct: 135 QSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-- 191
Query: 342 SMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEI 401
++ SG ++ PV+ V++ G +L T D L +
Sbjct: 192 IWDTASGQCLKT----LIDDDNPPVSFVKFS-----PNGKYILAATLDNTLKLWD----- 237
Query: 402 QGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL 461
Y +C LK + + S+ G++IV+GSED+ VY ++L + V KL
Sbjct: 238 --YSKGKC-LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKL 292
Query: 462 QGHRFPVVAVAWNHGENLLASSDLYG--IVIVWK 493
QGH V++ A + EN++AS+ L + +WK
Sbjct: 293 QGHTDVVISTACHPTENIIASAALENDKTIKLWK 326
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 152/309 (49%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 31 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 147
Query: 308 IKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ S H + G L+ G ++ SG ++ PV
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 201
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 202 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 248
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 307 NDKTIKLWK 315
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 152/309 (49%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 31 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 147
Query: 308 IKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ S H + G L+ G ++ SG ++ PV
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 201
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 202 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 248
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 307 NDKTIKLWK 315
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 152/309 (49%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 26 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 84 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 142
Query: 308 IKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ S H + G L+ G ++ SG ++ PV
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 196
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 197 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 243
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 244 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 301
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 302 NDKTIKLWK 310
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 152/309 (49%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 25 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 141
Query: 308 IKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ S H + G L+ G ++ SG ++ PV
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 195
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 196 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 242
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 301 NDKTIKLWK 309
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 154/309 (49%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 28 AVSSVKFSP-NGEWLAASSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 144
Query: 308 IKKLVVDSE-VTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ V+++ + G L+ G ++ SG ++ PV
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 198
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 199 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 245
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 304 NDKTIKLWK 312
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 152/309 (49%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 31 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 147
Query: 308 IKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ S H + G L+ G ++ SG ++ PV
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 201
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 202 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 248
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 307 NDKTIKLWK 315
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 152/309 (49%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 28 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGMC 144
Query: 308 IKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ S H + G L+ G ++ SG ++ PV
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 198
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D +L + Y +C LK + +
Sbjct: 199 SFVKFS-----PNGKYILAATLDNDLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 245
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 304 NDKTIKLWK 312
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 152/309 (49%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 25 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 141
Query: 308 IKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ S H + G L+ G ++ SG ++ PV
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 195
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 196 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 242
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 301 NDKTIKLWK 309
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 152/309 (49%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 30 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 88 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 146
Query: 308 IKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ S H + G L+ G ++ SG ++ PV
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 200
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 201 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 247
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 248 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 305
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 306 NDKTIKLWK 314
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 152/309 (49%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 21 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 79 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 137
Query: 308 IKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ S H + G L+ G ++ SG ++ PV
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 191
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 192 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 238
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 239 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 296
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 297 NDKTIKLWK 305
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 152/309 (49%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 24 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 82 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 140
Query: 308 IKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ S H + G L+ G ++ SG ++ PV
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 194
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 195 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 241
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 242 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 299
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 300 NDKTIKLWK 308
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 150/299 (50%), Gaps = 26/299 (8%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 28 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 144
Query: 308 IKKLVVDSE-VTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ V+++ + G L+ G ++ SG ++ PV
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 198
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 199 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 245
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDL 485
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAAL 302
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 150/299 (50%), Gaps = 26/299 (8%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 28 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG+
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKC 144
Query: 308 IKKLVVDSE-VTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ V+++ + G L+ G ++ SG ++ PV
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 198
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 199 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 245
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDL 485
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAAL 302
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 151/309 (48%), Gaps = 28/309 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS 248
AV+ +KF + + LA ++D + + D K K ++GH ++D +SS++ + S
Sbjct: 28 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 249 SSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307
+S DKT+++W+++ G C++ + G S+ + C F+P +N +S G+ ++ + +++ TG
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGMC 144
Query: 308 IKKLVVDSEVTSMDH-DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366
+K L S+ S H + G L+ G ++ SG ++ PV
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASGQCLKT----LIDDDNPPV 198
Query: 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426
+ V++ G +L T D L + Y +C LK + +
Sbjct: 199 SFVKFS-----PNGKYILAATLDNTLKLWD-------YSKGKC-LKTYTGHKNEKYCIFA 245
Query: 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486
S+ G++IV+GSED+ VY ++L + V KLQGH V++ A + EN++AS+ L
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 487 G--IVIVWK 493
+ +WK
Sbjct: 304 NDKTIKLWK 312
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 72/290 (24%)
Query: 202 LLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261
LA GA D + + + + K++ +L GH +D+ D+ + + S S D+TVR+W+L
Sbjct: 137 FLATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195
Query: 262 KGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMD 321
G C + + P + +++ G+ ++ + V++ TG ++++L ++E +
Sbjct: 196 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 255
Query: 322 HDHTGQLLFCGDAQGCIYSISMESHSGALSRSHR------------HRTTGKRKCPVTTV 369
D ++F D Q + SG+L RS + +T C VT +
Sbjct: 256 KDSVYSVVFTRDGQSVV--------SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Query: 370 QYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLS 429
++ F L SVA +
Sbjct: 308 GHKDFVL-------------------SVA------------------------------T 318
Query: 430 LEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENL 479
+ EYI++GS+D V F+D K + + LQGHR V++VA +G +L
Sbjct: 319 TQNDEYILSGSKDRGVLFWD--KKSGNPLLMLQGHRNSVISVAVANGSSL 366
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 116/281 (41%), Gaps = 28/281 (9%)
Query: 225 KLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPV 283
+ L GH+ V D F + + +AS S D T+++W+ +CIR ++G + + P
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP- 202
Query: 284 NNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDH-DHTGQLLF-CGDAQGCIYSI 341
N + + + +K I ++ TG +K E M + G L+ C + Q +
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 342 SMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG---------GPVLLTCTQDGNL 392
A R HRH P ++ Y S S G GP LL+ ++D +
Sbjct: 263 VATKECKAELREHRHVVECISWAPESS--YSSISEATGSETKKSGKPGPFLLSGSRDKTI 320
Query: 393 SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452
+ V+ T C + L + +R +L G++I++ ++D + +D
Sbjct: 321 KMWDVS-------TGMCLMTLVGHDNWVRG----VLFHSGGKFILSCADDKTLRVWDYKN 369
Query: 453 PKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493
+ C+ L H V ++ ++ + + + V VW+
Sbjct: 370 KR--CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 197 HMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVR 256
H + A D TL V + + +K LN H VT DF Y+ + S+D+TV+
Sbjct: 347 HSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
Query: 257 VWE 259
VWE
Sbjct: 406 VWE 408
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 30/164 (18%)
Query: 174 YSFVGMHCI-----FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN 228
+ F G CI D ++V+I+ G D + + D T+ + V +K
Sbjct: 177 WDFQGFECIRTMHGHDHNVSSVSIMPNG----DHIVSASRDKTIKMWEVQ-TGYCVKTFT 231
Query: 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNN-- 285
GH + V + + IAS S D+TVRVW + +C + + CI + P ++
Sbjct: 232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 291
Query: 286 -----------------NFLSVGNANKEITVFNFSTGRIIKKLV 312
FL G+ +K I +++ STG + LV
Sbjct: 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVI-YGVSSQL--CIRFHP-VN 284
GH+KDV FS +N+ I S D +RVW + KG+C+ + G + C+RF P ++
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLD 165
Query: 285 NNFLSVGNANKEITVFNFSTGRIIKKLVVDSE-VTSMDHDHTGQLLFCGDAQG 336
+ G + + V++ +TGR++ L + VTS+ G L D G
Sbjct: 166 APVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDG 218
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 227 LNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQ-LCIRFHPVNN 285
L GHS V+D S+N + S+S D ++R+W L G C G + L + F P N
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 286 NFLSVGNANKEITVFN 301
+S G N + V+N
Sbjct: 123 QIVSGGRDNA-LRVWN 137
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFH 281
+++ L GH+ VT S + ASS D R+W+LTKG+ + + + I F
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFS 246
Query: 282 PVNNNFLSVGNANKEITVFNFSTGRIIKKL 311
P N + K I +F+ II +L
Sbjct: 247 P--NRYWMCAATEKGIRIFDLENKDIIVEL 274
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 436 IVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495
IV+G D+ V +DLA + V L+GH V +V + +L ASSD G+ +W
Sbjct: 169 IVSGGWDNLVKVWDLATGR--LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Query: 496 K 496
K
Sbjct: 227 K 227
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 225 KLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPV 283
K L GH+ V+D S N + SSS DKT+R+W+L G + G S++ + F P
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 284 NNNFLSVGNANKEITVFN 301
N LS G A +EI ++N
Sbjct: 130 NRQILSAG-AEREIKLWN 146
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 22/184 (11%)
Query: 180 HCIFDQCKAAVTILKFGHMSSDLLAYGAS---DGTLTVCTVSDPPKVIKLLNGHSKDVTD 236
H + C I+K + Y AS DG L V + ++ H +V
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNH 218
Query: 237 FDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLC-IRFHPVNNNFLSVGNANK 295
S N +YIA+ DK + +W++ + + S + I F+P +++VG ++
Sbjct: 219 LSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP-KLQWVAVG-TDQ 276
Query: 296 EITVFNFSTGRIIKKLVVDSE--------------VTSMDHDHTGQLLFCGDAQGCIYSI 341
+ +FN T +++E TS+ + G+ LF G G I +
Sbjct: 277 GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336
Query: 342 SMES 345
S E+
Sbjct: 337 SFET 340
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 36/249 (14%)
Query: 222 KVIK--LLNGHSKDVTDF--DFS----SNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS 273
+V+K +L GHS VT FS ++ + S S DKTV +W+L + + +G+
Sbjct: 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ-NGYFGIP 68
Query: 274 SQ-LCIRFHPVNNNFLSVGNA-------NKEITVFNFSTGRIIKKLVV-DSEVTSMDHDH 324
+ L H V++ LS N +K + +++ TG K+ V SEV S+
Sbjct: 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 325 TGQLLFCGDAQGCI--YSISME-SHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGP 381
+ + A+ I ++I E S A +H + R P+ + + P
Sbjct: 129 DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANK---VQPFAP 185
Query: 382 VLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE 441
+ DG L ++ +I+ TF+ A + S P G+YI G +
Sbjct: 186 YFASVGWDGRLKVWNTNFQIR--YTFK-----AHESNVNHLSISP-----NGKYIATGGK 233
Query: 442 DSNVYFYDL 450
D + +D+
Sbjct: 234 DKKLLIWDI 242
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 131/311 (42%), Gaps = 45/311 (14%)
Query: 196 GHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN----------GHSKDVTDFDFSSNNQY 245
GH SS + DG T+ + SD K +KL N GHS V FS + Q
Sbjct: 178 GHSSSVWGVAFSPDGQ-TIASASDD-KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 235
Query: 246 IASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFST 304
IAS+S DKTV++W G ++ + G SS + + F P S + +K + ++N +
Sbjct: 236 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASD-DKTVKLWNRN- 292
Query: 305 GRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKC 364
G++++ L S + F D Q I S S + +R+ +H T
Sbjct: 293 GQLLQTLTGHSS-------SVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQHLQT--LTG 342
Query: 365 PVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRA-S 423
++V +FS G + + + D + ++ ++ LT S S+R +
Sbjct: 343 HSSSVWGVAFS--PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS--------SVRGVA 392
Query: 424 FCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASS 483
F P G+ I + S+D V ++ + L GH V VA++ + +AS+
Sbjct: 393 FSP-----DGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDDQTIASA 444
Query: 484 DLYGIVIVWKR 494
V +W R
Sbjct: 445 SDDKTVKLWNR 455
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 16/128 (12%)
Query: 196 GHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN----------GHSKDVTDFDFSSNNQY 245
GH SS + DG T+ + SD K +KL N GHS V FS + Q
Sbjct: 342 GHSSSVWGVAFSPDGQ-TIASASDD-KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 399
Query: 246 IASSSMDKTVRVWELTKGDCIRVIYGVSSQLC-IRFHPVNNNFLSVGNANKEITVFNFST 304
IAS+S DKTV++W G ++ + G SS + + F P + S + +K + ++N +
Sbjct: 400 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASD-DKTVKLWNRN- 456
Query: 305 GRIIKKLV 312
G++++ L
Sbjct: 457 GQLLQTLT 464
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 196 GHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN----------GHSKDVTDFDFSSNNQY 245
GH SS + DG T+ + SD K +KL N GHS V FS + Q
Sbjct: 55 GHSSSVWGVAFSPDGQ-TIASASDD-KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 112
Query: 246 IASSSMDKTVRVWELTKGDCIRVIYGVSSQLC-IRFHPVNNNFLSVGNANKEITVFNFST 304
IAS+S DKTV++W G ++ + G SS + + F P S + +K + ++N +
Sbjct: 113 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWNRN- 169
Query: 305 GRIIKKLV 312
G++++ L
Sbjct: 170 GQLLQTLT 177
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRF 280
++++ L GHS V FS + Q IAS+S DKTV++W G ++ + G SS + + F
Sbjct: 458 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF 516
Query: 281 HPVNNNFLSVGNANKEITVFNFSTGRIIKKLV 312
P S + +K + ++N + G++++ L
Sbjct: 517 SPDGQTIASASD-DKTVKLWNRN-GQLLQTLT 546
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRF 280
++++ L GHS V FS + Q IAS+S DKTV++W G ++ + G SS + + F
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF 106
Query: 281 HPVNNNFLSVGNANKEITVFNFSTGRIIKKLV 312
P S + +K + ++N + G++++ L
Sbjct: 107 SPDGQTIASASD-DKTVKLWNRN-GQLLQTLT 136
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 227 LNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLC-IRFHPVNN 285
L HS V FS + Q IAS+S DKTV++W G ++ + G SS + + F P
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 286 NFLSVGNANKEITVFNFSTGRIIKKLV 312
S + +K + ++N + G++++ L
Sbjct: 71 TIASASD-DKTVKLWNRN-GQLLQTLT 95
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259
++++ L GHS V FS + Q IAS+S DKTV++W
Sbjct: 540 QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 217 VSDPPK--VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSS 274
V DP + L GH+ V F + ++ S S+D ++RVW++ G+CI + G
Sbjct: 263 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG--H 318
Query: 275 QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL 311
Q + +N L GNA+ + +++ TG+ ++ L
Sbjct: 319 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 355
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 118/293 (40%), Gaps = 42/293 (14%)
Query: 225 KLLNGHSKDV-TDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPV 283
K+L GH V T F N I S S D T++VW G C+R + G + + +
Sbjct: 112 KVLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGG--VWSSQM 167
Query: 284 NNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISM 343
+N + G+ ++ + V+N TG I L + H H +++ G + +
Sbjct: 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV-SGSRDATLRVWDI 226
Query: 344 ESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG---------PVLLTC--TQDGNL 392
E+ H G V VQY +++G P TC T G+
Sbjct: 227 ETGQCL------HVLMG-HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 279
Query: 393 SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFC--------PLLS-LE-KGEYIVAGSED 442
+ +L+ G SL + RV + C L S +E K +V+G+ D
Sbjct: 280 NRV-YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 338
Query: 443 SNVYFYDLAKPKHSCVNKLQG---HRFPVVAVAWNHGENLLASSDLYGIVIVW 492
S V +D+ + C+ LQG H+ V + +N +N + +S G V +W
Sbjct: 339 STVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW 387
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 206 GASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDC 265
G+ D ++ V V + I L GH + + N + S + D TV++W++ G C
Sbjct: 295 GSLDTSIRVWDV-ETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQC 351
Query: 266 IRVIYG----VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV 312
++ + G S+ C++F N NF+ + + + +++ TG I+ LV
Sbjct: 352 LQTLQGPNKHQSAVTCLQF---NKNFVITSSDDGTVKLWDLKTGEFIRNLV 399
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 197 HMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVR 256
M +++ G++D TL V ++ + I L GH+ V + + + S S D T+R
Sbjct: 166 QMRDNIIISGSTDRTLKVWN-AETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLR 222
Query: 257 VWELTKGDCIRVIYG-VSSQLCIRF 280
VW++ G C+ V+ G V++ C+++
Sbjct: 223 VWDIETGQCLHVLMGHVAAVRCVQY 247
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 198 MSSDLLAYGASDGTLTVCTVSDPP--KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTV 255
+ ++L G +D T+ + + + ++ N H VT F+ N ++ +SS D TV
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTV 384
Query: 256 RVWELTKGDCIRVIYGVSS 274
++W+L G+ IR + + S
Sbjct: 385 KLWDLKTGEFIRNLVTLES 403
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 197 HMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVR 256
H+ + G+ D TL V + + + + +L GH V + + + + S + D V+
Sbjct: 206 HLHEKRVVSGSRDATLRVWDI-ETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK 262
Query: 257 VWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDS 315
VW+ C+ + G ++++ ++F ++ + G+ + I V++ TG I L
Sbjct: 263 VWDPETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVWDVETGNCIHTLTGHQ 319
Query: 316 EVTS 319
+TS
Sbjct: 320 SLTS 323
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYI 246
+AAV ++ F + + D T+ V S + ++ LNGH + + + ++ +
Sbjct: 256 RAAVNVVDF---DDKYIVSASGDRTIKVWNTS-TCEFVRTLNGHKRGIACLQY--RDRLV 309
Query: 247 ASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNF 302
S S D T+R+W++ G C+RV+ G + CIRF +N + G + +I V++
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDL 363
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 242 NNQYIASSSMDKTVRVWELTKGDCIRVIYG-VSSQLCIRFHPVNNNFLSVGNANKEITVF 300
++Q I S D T+++W+ +C R++ G S LC+++ + + G+++ + V+
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVW 198
Query: 301 NFSTGRIIKKLVVDSEVTSMDHDHTGQLLFC 331
+ +TG ++ L+ E + G ++ C
Sbjct: 199 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTC 229
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 27/205 (13%)
Query: 227 LNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVI-YGVSSQLCIRFHPVNN 285
L GH V D S ASSS+D +R+W+L G I+ I G + F P ++
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DS 134
Query: 286 NFLSVGNANKEITVFNFSTGRIIKKLVVDSE---VTSMDHDHTGQLLFCGDAQGCIYSIS 342
+L+ G ++ +F +G+ K+ +D+ + S+ + G+ L G G I
Sbjct: 135 QYLATGTHVGKVNIFGVESGK--KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 192
Query: 343 MESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA-LEI 401
+ +G L H G P+ RS + +L+T + DG + + V +
Sbjct: 193 IA--TGKL----LHTLEG-HAMPI-----RSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Query: 402 QGYLTFRCSLKLAPRVHSIRASFCP 426
G L+ S L +FCP
Sbjct: 241 AGTLSGHASWVL-------NVAFCP 258
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 431 EKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVI 490
E E +V GS D V + + L+GH+ VV+V +H + ASS L +
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105
Query: 491 VW 492
+W
Sbjct: 106 LW 107
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 129/315 (40%), Gaps = 50/315 (15%)
Query: 202 LLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261
++ Y DGT T D K + HS V +S + IAS+S DKT+++W +
Sbjct: 214 IVLYNGVDGTKTGVFEDDSLKNV----AHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269
Query: 262 KGDCIRVI-YGV---SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIK-KLVVDSE 316
+ I G QL I + +S+ +AN I N G I + + +
Sbjct: 270 TLKVEKTIPVGTRIEDQQLGIIW--TKQALVSI-SANGFINFVNPELGSIDQVRYGHNKA 326
Query: 317 VTSMDHDHTGQLLFCGDAQGCI--YSISMESHSGALSRSHRHRTTGKR---KCPVTTVQY 371
+T++ G+ LF DA+G I + IS + H TG + K + TV +
Sbjct: 327 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW 386
Query: 372 RSF--SLLAGG----------------PVLLTCTQDGNLS----FFSVALEIQGYLTFRC 409
+ AGG P+ L + DG+++ + +A+ G LT
Sbjct: 387 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT--- 443
Query: 410 SLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVV 469
V S C LS +K +++ G +DS V+ Y L+ S V + H +
Sbjct: 444 ------EVPISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEIT 495
Query: 470 AVAWNHGENLLASSD 484
+VA+++ L ++D
Sbjct: 496 SVAFSNNGAFLVATD 510
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 225 KLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQ-LCIRFHPV 283
+ L GHS V+D SS+ Q+ S S D T+R+W+LT G R G + L + F
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 284 NNNFLSVGNANKEITVFN 301
N +S G+ +K I ++N
Sbjct: 117 NRQIVS-GSRDKTIKLWN 133
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 65/255 (25%)
Query: 227 LNGHSKDVTDFDFSSNNQY---IASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFH-- 281
L GH+ VT ++ Q+ I S+S DKT+ +W+LT+ + YG+ Q +R H
Sbjct: 11 LKGHNGWVTQI--ATTPQFPDMILSASRDKTIIMWKLTRDE---TNYGI-PQRALRGHSH 64
Query: 282 -------PVNNNFLSVGNANKEITVFNFSTGRIIKKLVV-------------DSEVTSMD 321
+ F G+ + + +++ +TG ++ V + ++ S
Sbjct: 65 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 124
Query: 322 HDHTGQLLFCGDAQG-CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG 380
D T +L + G C Y++ ESHS +S C FS +
Sbjct: 125 RDKTIKLW---NTLGVCKYTVQDESHSEWVS------------CV-------RFSPNSSN 162
Query: 381 PVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGS 440
P++++C D + +++A C LK H+ + G +G
Sbjct: 163 PIIVSCGWDKLVKVWNLA---------NCKLKTNHIGHT--GYLNTVTVSPDGSLCASGG 211
Query: 441 EDSNVYFYDLAKPKH 455
+D +DL + KH
Sbjct: 212 KDGQAMLWDLNEGKH 226
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 225 KLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQ-LCIRFHPV 283
+ L GHS V+D SS+ Q+ S S D T+R+W+LT G R G + L + F
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 284 NNNFLSVGNANKEITVFN 301
N +S G+ +K I ++N
Sbjct: 140 NRQIVS-GSRDKTIKLWN 156
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 65/255 (25%)
Query: 227 LNGHSKDVTDFDFSSNNQY---IASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFH-- 281
L GH+ VT ++ Q+ I S+S DKT+ +W+LT+ + YG+ Q +R H
Sbjct: 34 LKGHNGWVTQI--ATTPQFPDMILSASRDKTIIMWKLTRDE---TNYGI-PQRALRGHSH 87
Query: 282 -------PVNNNFLSVGNANKEITVFNFSTGRIIKKLVV-------------DSEVTSMD 321
+ F G+ + + +++ +TG ++ V + ++ S
Sbjct: 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 147
Query: 322 HDHTGQLLFCGDAQG-CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG 380
D T +L + G C Y++ ESHS +S C FS +
Sbjct: 148 RDKTIKLW---NTLGVCKYTVQDESHSEWVS------------CV-------RFSPNSSN 185
Query: 381 PVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGS 440
P++++C D + +++A C LK H+ + G +G
Sbjct: 186 PIIVSCGWDKLVKVWNLA---------NCKLKTNHIGHT--GYLNTVTVSPDGSLCASGG 234
Query: 441 EDSNVYFYDLAKPKH 455
+D +DL + KH
Sbjct: 235 KDGQAMLWDLNEGKH 249
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 199 SSDLLAYGAS-DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDF--SSNNQYIASSSMDKTV 255
+SD+ AS DGT + V + ++++ +GH DV D S S DK
Sbjct: 164 NSDMQILTASGDGTCALWDV-ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 256 RVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGR---IIKKL 311
VW++ G C++ S + +R++P + F S G+ + +++ R I K
Sbjct: 223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS-GSDDATCRLYDLRADREVAIYSKE 281
Query: 312 VVDSEVTSMDHDHTGQLLFCG 332
+ +S+D +G+LLF G
Sbjct: 282 SIIFGASSVDFSLSGRLLFAG 302
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 198 MSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRV 257
+S LL G +D T+ V V +V +L GH V+ S + S S D T+RV
Sbjct: 294 LSGRLLFAGYNDYTINVWDVLKGSRV-SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV 352
Query: 258 W 258
W
Sbjct: 353 W 353
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDF-----DFSSNNQYIASSSMDK 253
S D A G+ D T C + D + + + +SK+ F DFS + + + + D
Sbjct: 251 SGDAFASGSDDAT---CRLYDL-RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY 306
Query: 254 TVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLS 289
T+ VW++ KG + +++G +++ +R P F S
Sbjct: 307 TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 222 KVIKLLNGHSKDVTDFDFSS-NNQYIASSSMDKTVRVWELTKG-------DCIRVIYGVS 273
K + L+ GH+ V D + N+ IAS S D TV VWE+ G + + + G +
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 274 SQLCI-RFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD---SEVTSMDHDHTGQLL 329
++ I +HP N L + I V++ TG + L D + S+D G L+
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 222 KVIKLLNGHSKDVTDFDFSS-NNQYIASSSMDKTVRVWELTKG-------DCIRVIYGVS 273
K + L+ GH+ V D + N+ IAS S D TV VWE+ G + + + G +
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 274 SQLCI-RFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD---SEVTSMDHDHTGQLL 329
++ I +HP N L + I V++ TG + L D + S+D G L+
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 196 GHMSS--------DLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA 247
GHM+S +++ G+ D TL V V+ K + +L+GH+ + + +
Sbjct: 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVA-QMKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 248 SSSMDKTVRVWELTKGDCIRVIYG 271
S+SMD T+R+W+L G+ + + G
Sbjct: 327 SASMDTTIRIWDLENGELMYTLQG 350
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 196 GHMSS---------DLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYI 246
GHM+S + + GA D + V S K + L+GH V ++ + +
Sbjct: 119 GHMTSVITCLQFEDNYVITGADDKMIRVYD-SINKKFLLQLSGHDGGVWALKYA-HGGIL 176
Query: 247 ASSSMDKTVRVWELTKGDCIRVIYGVSSQL 276
S S D+TVRVW++ KG C V G +S +
Sbjct: 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTV 206
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 209 DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268
D L T + P + +L GH V S + + S S D T+ VW++ + C+ +
Sbjct: 248 DYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYI 305
Query: 269 IYGVSSQL 276
+ G + ++
Sbjct: 306 LSGHTDRI 313
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 433 GEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVW 492
G +V+GS D+ + +D+A+ K C+ L GH + + ++H S+ + + +W
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 229 GHSKDVTDFD----FSSNN----QYIASSSMDKTVRVWELTKGDCIRVIYGVSSQ-LCIR 279
GH V D D +S++N Q IAS D T+ +W LT I Y +SS + ++
Sbjct: 135 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQ 194
Query: 280 FHPVNNNFLSVGNANKEITVFNFS 303
F P N N L VG N I +F+++
Sbjct: 195 FRPSNPNQLIVGERNGNIRIFDWT 218
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 229 GHSKDVTDFD----FSSNN----QYIASSSMDKTVRVWELTKGDCIRVIYGVSSQ-LCIR 279
GH V D D +S++N Q IAS D T+ +W LT I Y +SS + ++
Sbjct: 134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQ 193
Query: 280 FHPVNNNFLSVGNANKEITVFNFS 303
F P N N L VG N I +F+++
Sbjct: 194 FRPSNPNQLIVGERNGNIRIFDWT 217
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 203 LAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK 262
+A +D TL V K++ + H +V FSS++ YIA+ S DK V++W+
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688
Query: 263 GDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNAN 294
G + S Q+ C F +N+ L +N
Sbjct: 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 721
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 27/215 (12%)
Query: 201 DLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260
+ +A+G DG + + + + +V GH K V F+++ + + SSS D ++VW
Sbjct: 974 EYVAFGDEDGAIKIIELPNN-RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032
Query: 261 TKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSM 320
GD V + F + ++ L + + + V+N TGRI +
Sbjct: 1033 QTGD--YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC------- 1083
Query: 321 DHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHR-----HRTTGKRKCPVTTVQYRSFS 375
H G +L C + S + A S H G C V+ +FS
Sbjct: 1084 ---HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGC----VRCSAFS 1136
Query: 376 LLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCS 410
L G +L T +G + ++V+ G L C+
Sbjct: 1137 L--DGILLATGDDNGEIRIWNVS---DGQLLHSCA 1166
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQ-LCIRFHPVNNNFL 288
H+ V FS + Q IAS DKT++V++ G+ + I + LC F +++++
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYI 672
Query: 289 SVGNANKEITVFNFSTGRII 308
+ +A+K++ +++ +TG+++
Sbjct: 673 ATCSADKKVKIWDSATGKLV 692
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 183 FDQCKAAVTILKFGHMSSDLL-AYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSS 241
+D+ V F + S+ LL A G++D L + + + + + GH+ V FS
Sbjct: 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSP 753
Query: 242 NNQYIASSSMDKTVRVWEL 260
+++ +AS S D T+R+W++
Sbjct: 754 DDELLASCSADGTLRLWDV 772
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 204 AYGASDGTLTVCTV--------SDPPKVIKLLNGHSKDVT--DFDFSSNNQYIASSSMDK 253
A+ + D + C+ S K++ + HS+ V F SN+ +A+ S D
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723
Query: 254 TVRVWELTKGDCIRVIYGVSSQL--CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL 311
+++W+L + +C ++G ++ + C RF P ++ L+ +A+ + +++ + K +
Sbjct: 724 FLKLWDLNQKECRNTMFGHTNSVNHC-RFSP-DDELLASCSADGTLRLWDVRSANERKSI 781
Query: 312 VV 313
V
Sbjct: 782 NV 783
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFL 288
GH V FS + ++S D+T+RVWE TK C + ++ + F L
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWE-TKKVCKNSAIVLKQEIDVVFQENETMVL 938
Query: 289 SVGNANKEITVFNFSTGRI 307
+V N + + + TG+I
Sbjct: 939 AVDNI-RGLQLIAGKTGQI 956
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 203 LAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK 262
+A +D TL V K++ + H +V FSS++ YIA+ S DK V++W+
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 695
Query: 263 GDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNAN 294
G + S Q+ C F +N+ L +N
Sbjct: 696 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 728
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 27/215 (12%)
Query: 201 DLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260
+ +A+G DG + + + + +V GH K V F+++ + + SSS D ++VW
Sbjct: 981 EYVAFGDEDGAIKIIELPNN-RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1039
Query: 261 TKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSM 320
GD V + F + ++ L + + + V+N TGRI +
Sbjct: 1040 QTGD--YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC------- 1090
Query: 321 DHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHR-----HRTTGKRKCPVTTVQYRSFS 375
H G +L C + S + A S H G C V+ +FS
Sbjct: 1091 ---HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGC----VRCSAFS 1143
Query: 376 LLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCS 410
L G +L T +G + ++V+ G L C+
Sbjct: 1144 L--DGILLATGDDNGEIRIWNVS---DGQLLHSCA 1173
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQ-LCIRFHPVNNNFL 288
H+ V FS + Q IAS DKT++V++ G+ + I + LC F +++++
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYI 679
Query: 289 SVGNANKEITVFNFSTGRII 308
+ +A+K++ +++ +TG+++
Sbjct: 680 ATCSADKKVKIWDSATGKLV 699
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 183 FDQCKAAVTILKFGHMSSDLL-AYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSS 241
+D+ V F + S+ LL A G++D L + + + + + GH+ V FS
Sbjct: 702 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSP 760
Query: 242 NNQYIASSSMDKTVRVWEL 260
+++ +AS S D T+R+W++
Sbjct: 761 DDELLASCSADGTLRLWDV 779
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 204 AYGASDGTLTVCTV--------SDPPKVIKLLNGHSKDVT--DFDFSSNNQYIASSSMDK 253
A+ + D + C+ S K++ + HS+ V F SN+ +A+ S D
Sbjct: 671 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 730
Query: 254 TVRVWELTKGDCIRVIYGVSSQL--CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL 311
+++W+L + +C ++G ++ + C RF P ++ L+ +A+ + +++ + K +
Sbjct: 731 FLKLWDLNQKECRNTMFGHTNSVNHC-RFSP-DDELLASCSADGTLRLWDVRSANERKSI 788
Query: 312 VV 313
V
Sbjct: 789 NV 790
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFL 288
GH V FS + ++S D+T+RVWE TK C + ++ + F L
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWE-TKKVCKNSAIVLKQEIDVVFQENETMVL 945
Query: 289 SVGNANKEITVFNFSTGRI 307
+V N + + + TG+I
Sbjct: 946 AVDNI-RGLQLIAGKTGQI 963
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 25/206 (12%)
Query: 202 LLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE-- 259
+L+ G+ G + V I L GHS +V + S+ +AS D V++W+
Sbjct: 188 VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247
Query: 260 -----LTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNA--NKEITVFNFSTGRIIKKLV 312
TK + + V+ + P +N L+ G +K+I +N +TG + +
Sbjct: 248 SSIPKFTKTNHNAAVKAVA------WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD 301
Query: 313 VDSEVTSMDHD-HTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQY 371
S+VTS+ H+ +++ SI S SG T + P +
Sbjct: 302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG---------LTKQVDIPAHDTRV 352
Query: 372 RSFSLLAGGPVLLTCTQDGNLSFFSV 397
+L G +L T D NL F+ V
Sbjct: 353 LYSALSPDGRILSTAASDENLKFWRV 378
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 34/216 (15%)
Query: 203 LAYGASDGTLTVCTVSDPPKVI----KLLNGHSKDVTDFDFSS-NNQYIASSSMDKTVRV 257
L G+ D T + V+ ++ + +GH+ DV +S N S S D TVR+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 258 WEL-TKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDS 315
W+L +R +G + ++F P F G+ + +F+ TG ++ +
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRF-GTGSDDGTCRLFDMRTGHQLQVYNREP 291
Query: 316 E--------VTSMDHDHTGQLLFCGDAQGCIYS-----ISMESHSGALSRSHRHRTTGKR 362
+ VTS+ +G+LLF G + G Y M + G L SH G+
Sbjct: 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHE----GRI 347
Query: 363 KCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398
C L + G L T + D NL ++ +
Sbjct: 348 SC---------LGLSSDGSALCTGSWDKNLKIWAFS 374
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Query: 198 MSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRV 257
+ +D+ Y + G V + L GHS V D++ +I S+S D + V
Sbjct: 33 LDTDVEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIV 92
Query: 258 WE-LTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST 304
W LT + + F P N ++ G + ++FN S+
Sbjct: 93 WNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSS 139
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 457 CVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493
C LQGH V ++ W +N + S+ G +IVW
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWN 94
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 178 GMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDF 237
+ F+ + V + F A G D T+ V ++ L G + V
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 238 DFSS--NNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIR-FHPVNNNFLSVGNAN 294
D+ + Y+ ++S D T+++W+ C+ + G S + FHP +S G+ +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS-GSED 249
Query: 295 KEITVFNFSTGRIIKKLVVDSE 316
+ ++N ST ++ K L V E
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLE 271
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 94/268 (35%), Gaps = 57/268 (21%)
Query: 223 VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHP 282
+ K + S V DF ++ ++ V +W +R I + +
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 283 VNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSE-----------------VTSMDHDHT 325
N++ VG+ + I VFN++TG + VVD E V S D T
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTG----EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 326 GQLLFCGDAQGCIYSISMESH----------------SGALSRSHRHRTTGKRKCPVTT- 368
+L + + H SG L R+ + + G+ T
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 369 ------VQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR- 421
V Y + L P ++T + D + ++I Y T C L + ++
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDD-------LTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 422 ASFCPLLSLEKGEYIVAGSEDSNVYFYD 449
A F P L + I++GSED + ++
Sbjct: 234 AVFHPTLPI-----IISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 178 GMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDF 237
+ F+ + V + F A G D T+ V ++ L G + V
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 238 DFSS--NNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIR-FHPVNNNFLSVGNAN 294
D+ + Y+ ++S D T+++W+ C+ + G S + FHP +S G+ +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS-GSED 249
Query: 295 KEITVFNFSTGRIIKKLVVDSE 316
+ ++N ST ++ K L V E
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLE 271
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 94/268 (35%), Gaps = 57/268 (21%)
Query: 223 VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHP 282
+ K + S V DF ++ ++ V +W +R I + +
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 283 VNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSE-----------------VTSMDHDHT 325
N++ VG+ + I VFN++TG + VVD E V S D T
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTG----EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 326 GQLLFCGDAQGCIYSISMESH----------------SGALSRSHRHRTTGKRKCPVTT- 368
+L + + H SG L R+ + + G+ T
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 369 ------VQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR- 421
V Y + L P ++T + D + ++I Y T C L + ++
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDD-------LTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 422 ASFCPLLSLEKGEYIVAGSEDSNVYFYD 449
A F P L + I++GSED + ++
Sbjct: 234 AVFHPTLPI-----IISGSEDGTLKIWN 256
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258
+S +L+ G+ G + V + L+GHS++V ++ + +++AS D V VW
Sbjct: 209 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Query: 259 ELTKGDCIRVIYGVSSQ-----LCIRFHPVNNNFLSV--GNANKEITVFNFSTGRIIKKL 311
G+ V +Q + + P +N L+ G +++ I ++N +G + +
Sbjct: 269 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 328
Query: 312 VVDSEVTSM 320
S+V S+
Sbjct: 329 DAHSQVCSI 337
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 237 FDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYG------VSSQLCIRFHPVNNNFLSV 290
D+SS N + + ++D +V +W + GD ++++ +SS I+ N+L+V
Sbjct: 122 VDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK----EGNYLAV 175
Query: 291 GNANKEITVFNFSTGRIIKKLVVDS-EVTSMDHDHTGQLLFCGDAQGCI--YSISMESHS 347
G ++ E+ +++ + ++ + S V S+ + +L G G I + + + H
Sbjct: 176 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH 233
Query: 348 GALSRSHRHRTTGKRKCP 365
A H G R P
Sbjct: 234 VATLSGHSQEVCGLRWAP 251
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 191 TILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS 250
+IL H + +G + L + KV +L GH+ V S + +AS++
Sbjct: 336 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAA 394
Query: 251 MDKTVRVWELTKGDCIR 267
D+T+R+W + D R
Sbjct: 395 ADETLRLWRCFELDPAR 411
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258
+S +L+ G+ G + V + L+GHS++V ++ + +++AS D V VW
Sbjct: 118 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Query: 259 ELTKGDCIRVIYGVSSQ-----LCIRFHPVNNNFLSV--GNANKEITVFNFSTGRIIKKL 311
G+ V +Q + + P +N L+ G +++ I ++N +G + +
Sbjct: 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237
Query: 312 VVDSEVTSM 320
S+V S+
Sbjct: 238 DAHSQVCSI 246
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 237 FDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYG------VSSQLCIRFHPVNNNFLSV 290
D+SS N + + ++D +V +W + GD ++++ +SS I+ N+L+V
Sbjct: 31 VDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK----EGNYLAV 84
Query: 291 GNANKEITVFNFSTGRIIKKLVVDS-EVTSMDHDHTGQLLFCGDAQGCI--YSISMESHS 347
G ++ E+ +++ + ++ + S V S+ + +L G G I + + + H
Sbjct: 85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH 142
Query: 348 GALSRSHRHRTTGKRKCP 365
A H G R P
Sbjct: 143 VATLSGHSQEVCGLRWAP 160
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 191 TILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS 250
+IL H + +G + L + KV +L GH+ V S + +AS++
Sbjct: 245 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAA 303
Query: 251 MDKTVRVW 258
D+T+R+W
Sbjct: 304 ADETLRLW 311
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258
+S +L+ G+ G + V + L+GHS++V ++ + +++AS D V VW
Sbjct: 198 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Query: 259 ELTKGDCIRVIYGVSSQ-----LCIRFHPVNNNFLSV--GNANKEITVFNFSTGRIIKKL 311
G+ V +Q + + P +N L+ G +++ I ++N +G + +
Sbjct: 258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317
Query: 312 VVDSEVTSM 320
S+V S+
Sbjct: 318 DAHSQVCSI 326
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 237 FDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYG------VSSQLCIRFHPVNNNFLSV 290
D+SS N + + ++D +V +W + GD ++++ +SS I+ N+L+V
Sbjct: 111 VDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK----EGNYLAV 164
Query: 291 GNANKEITVFNFSTGRIIKKLVVDS-EVTSMDHDHTGQLLFCGDAQGCI--YSISMESHS 347
G ++ E+ +++ + ++ + S V S+ + +L G G I + + + H
Sbjct: 165 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH 222
Query: 348 GALSRSHRHRTTGKRKCP 365
A H G R P
Sbjct: 223 VATLSGHSQEVCGLRWAP 240
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 191 TILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS 250
+IL H + +G + L + KV +L GH+ V S + +AS++
Sbjct: 325 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAA 383
Query: 251 MDKTVRVWELTKGDCIR 267
D+T+R+W + D R
Sbjct: 384 ADETLRLWRCFELDPAR 400
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 433 GEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVW 492
G Y+ + S D+ + + CV L+GH V +VAW NLLA+ V VW
Sbjct: 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Query: 493 K 493
+
Sbjct: 133 E 133
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 197 HMSSDLLAYGASDGTLTVCTVSDPPKVI-KLLNGHSKDVTDFDFSSNNQYIASSSMDKTV 255
H S +LLA + D T+ + + V L GH V F + Q +AS S D+TV
Sbjct: 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218
Query: 256 RVW 258
R+W
Sbjct: 219 RIW 221
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 199 SSDLLAYGASDGTLTVCTV--SDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVR 256
S +LLA + D ++ V V D + + +LN H++DV + + + +AS+S D TV+
Sbjct: 116 SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK 175
Query: 257 VWELTKGD--CIRVIYGVSSQL-CIRFHPVNNNFLSVGN 292
++ + D C + G S + + F P S +
Sbjct: 176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 219 DPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD---CIRVIYGVSSQ 275
D + + L GH +V ++ + +A+ S DK+V VWE+ + D C+ V+ +
Sbjct: 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152
Query: 276 LC-IRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV---DSEVTSMDHDHTGQ-LLF 330
+ + +HP + L+ + + + ++ + + +S V S+ D +GQ L
Sbjct: 153 VKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211
Query: 331 CGD 333
C D
Sbjct: 212 CSD 214
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 226 LLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD--CIRVIYGVSSQLCIRFHPV 283
L GH + V +S Y+AS+S D T +W+ + D C+ + G +++
Sbjct: 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115
Query: 284 NNNFLSVGNANKEITVFN 301
+ N L+ + +K + V+
Sbjct: 116 SGNLLATCSRDKSVWVWE 133
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 370 QYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLS 429
+ +S + G +L TC++D ++ + V E + + C L ++ ++
Sbjct: 107 EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE----YECVSVLNSHTQDVKH----VVW 158
Query: 430 LEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIV 489
E + + S D V Y + C L+GH V ++A++ LAS V
Sbjct: 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218
Query: 490 IVWKR 494
+W++
Sbjct: 219 RIWRQ 223
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 410 SLKLAPRVHSIRASFCPLLSLE-KGEYIVAGSEDSNVYFYDLAKPKHSCVNKL-QGHRFP 467
SL L RV + S C L+ G + + D + + C + L +GH+
Sbjct: 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRT 63
Query: 468 VVAVAWNHGENLLASSDLYGIVIVWKR 494
V VAW+ N LAS+ +WK+
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKK 90
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 433 GEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE--NLLASSDLYGIVI 490
G+ + S D + +++ H ++ L GH PV V W H + +LAS G V+
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 491 VWKR 494
+WK
Sbjct: 81 IWKE 84
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSS 241
+ D A V L F S +LA G++D T+ + + + + H ++ +S
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 242 NNQYI-ASSSMDKTVRVWELTK 262
+N+ I ASS D+ + VW+L+K
Sbjct: 330 HNETILASSGTDRRLNVWDLSK 351
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-------------PPKVIKLLNG 229
F+ K + + + + +LA +D L V +S PP+++ + G
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 230 HSKDVTDFDFSSNNQY-IASSSMDKTVRVWELTK 262
H+ ++DF ++ N + I S S D ++W+ +
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAE 408
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 202 LLAYGASDGTLTVCTVSDPPK------VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTV 255
LLA G+ D T+++ + ++ ++ GH +V +S++ Y+A+ S DK+V
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 256 RVWELTKG----DCIRVIYGVSSQLC-IRFHP 282
+WE + +CI V+ S + + +HP
Sbjct: 132 WIWETDESGEEYECISVLQEHSQDVKHVIWHP 163
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 433 GEYIVAGSEDSNVYFY--DLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVI 490
G Y+ S D +V+ + D + ++ C++ LQ H V V W+ E LLASS V
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR 178
Query: 491 VWK 493
+WK
Sbjct: 179 IWK 181
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 197 HMSSDLLAYGASDGTLTVCT-VSDPPKVIKLLNGHSKDV--TDFDFSSNNQYIASSSMDK 253
H S LLA + D T+ + D + + +LNGH V +DFD + + S S D
Sbjct: 162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS 221
Query: 254 TVRVWELTKGD 264
TVRVW+ D
Sbjct: 222 TVRVWKYMGDD 232
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 224 IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD--CIRVIYG 271
I +L HS+DV + + +ASSS D TVR+W+ D C+ V+ G
Sbjct: 146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG 195
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSS 241
+ D A V L F S +LA G++D T+ + + + + H ++ +S
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 242 NNQYI-ASSSMDKTVRVWELTK 262
+N+ I ASS D+ + VW+L+K
Sbjct: 330 HNETILASSGTDRRLNVWDLSK 351
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-------------PPKVIKLLNG 229
F+ K + + + + +LA +D L V +S PP+++ + G
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 230 HSKDVTDFDFSSNNQY-IASSSMDKTVRVWELTK 262
H+ ++DF ++ N + I S S D +++W++ +
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 433 GEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE--NLLASSDLYGIVI 490
G+ + S D + +++ H ++ L GH PV V W H + +LAS G V+
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 491 VWKR 494
+WK
Sbjct: 83 IWKE 86
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 178 GMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDF 237
+ F+ + V + F A G D T+ V ++ L G + V
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 238 DFSS--NNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIR-FHPVNNNFLSVGNAN 294
D+ + Y+ ++S D T+++W+ C+ + G S + FHP +S G+ +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS-GSED 249
Query: 295 KEITVFNFSTGRIIKKLVVDSE 316
+ ++N ST ++ K L V E
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLE 271
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 94/268 (35%), Gaps = 57/268 (21%)
Query: 223 VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHP 282
+ K + S V DF ++ ++ V +W +R I + +
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 283 VNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSE-----------------VTSMDHDHT 325
N++ VG+ + I VFN++TG + VVD E V S D T
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTG----EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 326 GQLLFCGDAQGCIYSISMESH----------------SGALSRSHRHRTTGKRKCPVTT- 368
+L + + H SG L R+ + + G+ T
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 369 ------VQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR- 421
V Y + L P ++T + D + ++I Y T C L + ++
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDD-------LTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 422 ASFCPLLSLEKGEYIVAGSEDSNVYFYD 449
A F P L + I++GSED + ++
Sbjct: 234 AVFHPTLPI-----IISGSEDGTLKIWN 256
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 203 LAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK 262
+A +D TL V K++++ H +V FS+++++IA+ S+DK V++W
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEI-KAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMT 694
Query: 263 GDCIRVIYGVSSQL-CIRFHPVNNNFL 288
G+ + S Q+ C F +++ L
Sbjct: 695 GELVHTYDEHSEQVNCCHFTNSSHHLL 721
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQ-LCIRFHPVNNNFL 288
H+ V FS + Q IAS DKT++V++ G+ + I + LC F ++ F+
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAF-STDDRFI 678
Query: 289 SVGNANKEITVFNFSTGRII 308
+ + +K++ ++N TG ++
Sbjct: 679 ATCSVDKKVKIWNSMTGELV 698
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 191 TILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS 250
T+ F + + L + DGT+ V + K K H V D S + +S+S
Sbjct: 1052 TVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKE-KDFVCHQGTVLSCDISHDATKFSSTS 1110
Query: 251 MDKTVRVWELTKGDCIRVIYGVSSQLCIR--FHPVNNNFLSVGNANKEITVFNFSTGRII 308
DKT ++W + + G + C+R V++ L+ G+ N EI ++N S G ++
Sbjct: 1111 ADKTAKIWSFDLLLPLHELRGHNG--CVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELL 1168
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 202 LLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261
LLA G+SD L + + + + + GH+ V FS +++ +AS S D T+++W+ T
Sbjct: 721 LLATGSSDCFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDAT 779
Query: 262 KGD 264
+
Sbjct: 780 SAN 782
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 203 LAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK 262
+A+G +G + + + + ++ + H K V F+++ + + SSS D ++VW
Sbjct: 982 IAFGDENGAIEILELVNN-RIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQL 1040
Query: 263 GDCIRVIYGVSSQLCIR-FHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMD 321
C I+ Q ++ F + N+ L + + + V+N TG K V
Sbjct: 1041 DKC---IFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVC-------- 1089
Query: 322 HDHTGQLLFC 331
H G +L C
Sbjct: 1090 --HQGTVLSC 1097
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 4/131 (3%)
Query: 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFL 288
GH V FS + +SS D+T+R+WE TK C + ++ + F L
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE-TKKVCKNSAVMLKQEVDVVFQENEVMVL 944
Query: 289 SVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSG 348
+V + + + + N TG+I + +++V+ Q + GD G I + + ++
Sbjct: 945 AVDHI-RRLQLINGRTGQI--DYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRI 1001
Query: 349 ALSRSHRHRTT 359
SR +T
Sbjct: 1002 FQSRFQHKKTV 1012
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLC-IRFHPVNN-- 285
GH DV D I S S DKT++VW + KG C+ + G + + +R P
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 286 ----NFLSVGNANKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCGDAQGCI 338
+S GN +K + +N + +I + +S + ++ G L+ G I
Sbjct: 164 DDSVTIISAGN-DKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 224 IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL 276
++ GHS V D +++ Y S+S DKT+R+W++ G+ + G S +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 95/256 (37%), Gaps = 39/256 (15%)
Query: 227 LNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELTKGDC-----IRVIYGVSSQLCIRF 280
L GH+ VT S+ + S+S DKT+ W+LT D +R G S
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS------- 65
Query: 281 HPVNNNFLSVGNA-------NKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCG 332
H V + L+ A +K + +++ +TG ++ V S+V S+D D + G
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISG 125
Query: 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNL 392
I +++ A H + R P S ++++ G + NL
Sbjct: 126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND--KXVKAWNL 183
Query: 393 SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452
+ F + + G+ + +L +P G I + +D + ++LA
Sbjct: 184 NQFQIEADFIGHNSNINTLTASP----------------DGTLIASAGKDGEIXLWNLAA 227
Query: 453 PKHSCVNKLQGHRFPV 468
K Q F +
Sbjct: 228 KKAXYTLSAQDEVFSL 243
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLC-IRFHPVNN-- 285
GH DV D I S S DKT++VW + KG C+ + G + + +R P
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 286 ----NFLSVGNANKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCGDAQGCI 338
+S GN +K + +N + +I + +S + ++ G L+ G I
Sbjct: 164 DDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 39/242 (16%)
Query: 227 LNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELTKGDC-----IRVIYGVSSQLCIRF 280
L GH+ VT S+ + S+S DKT+ W+LT D +R G S
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS------- 65
Query: 281 HPVNNNFLSVGNA-------NKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCG 332
H V + L+ A +K + +++ +TG ++ V S+V S+D D ++ G
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNL 392
I +++ A H + R P S ++++ G + + NL
Sbjct: 126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM--VKAWNL 183
Query: 393 SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452
+ F + + G+ + +L +P G I + +D + ++LA
Sbjct: 184 NQFQIEADFIGHNSNINTLTASP----------------DGTLIASAGKDGEIMLWNLAA 227
Query: 453 PK 454
K
Sbjct: 228 KK 229
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 224 IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPV 283
++ GHS V D +++ Y S+S DKT+R+W++ G+ + G S +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 284 NNNFLSVGNANKEITVFNF 302
+ + G+ +K I V+
Sbjct: 118 KASMIISGSRDKTIKVWTI 136
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 23/146 (15%)
Query: 207 ASDGTLTVCTVSDPPKVIKLLN-----------GHSKDVTDFDFSSNNQYIASSSMDKTV 255
A D ++T+ + + K++K N GH+ ++ S + IAS+ D +
Sbjct: 162 ADDDSVTIISAGND-KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 256 RVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL---- 311
+W L + + + F P N +L+ A I VF+ ++ L
Sbjct: 221 MLWNLAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATATG-IKVFSLDPQYLVDDLRPEF 278
Query: 312 -----VVDSEVTSMDHDHTGQLLFCG 332
+ S+ GQ LF G
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAG 304
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 178 GMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDF 237
+ F+ + V + F A G D T+ V ++ L G + V
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 238 DFSS--NNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIR-FHPVNNNFLSVGNAN 294
D+ + Y+ ++S D T+++W+ C+ + G S + FHP +S G+ +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS-GSED 249
Query: 295 KEITVFNFSTGRIIKKLVVDSE 316
+ ++N ST ++ K L V E
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLE 271
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 94/268 (35%), Gaps = 57/268 (21%)
Query: 223 VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHP 282
+ K + S V DF ++ ++ V +W +R I + +
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 283 VNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSE-----------------VTSMDHDHT 325
N++ VG+ + I VFN++TG + VVD E V S D T
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTG----EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 326 GQLLFCGDAQGCIYSISMESH----------------SGALSRSHRHRTTGKRKCPVTT- 368
+L + + H SG L R+ + + G+ T
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 369 ------VQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR- 421
V Y + L P ++T + D + ++I Y T C L + ++
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDD-------LTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 422 ASFCPLLSLEKGEYIVAGSEDSNVYFYD 449
A F P L + I++GSED + ++
Sbjct: 234 AVFHPTLPI-----IISGSEDGTLKIWN 256
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN 243
D A V L F S +LA G++D T+ + + + + H ++ +S +N
Sbjct: 278 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 337
Query: 244 QYI-ASSSMDKTVRVWELTK 262
+ I ASS D+ + VW+L+K
Sbjct: 338 ETILASSGTDRRLHVWDLSK 357
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-------------PPKVIKLLNG 229
F+ K + +++ + +LA +D L V +S PP+++ + G
Sbjct: 321 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 380
Query: 230 HSKDVTDFDFSSNNQYIA-SSSMDKTVRVWELTK 262
H+ ++DF ++ N +I S S D ++VW++ +
Sbjct: 381 HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 414
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/111 (18%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 203 LAYGASDGTLTVCTVSDPPKVIKLLN------GHSKDVTDFDFSSNNQYI-ASSSMDKTV 255
L + D T+ + ++ PK ++++ GH+ V D + ++ + S + D+ +
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 256 RVWELTKGDCIRVIYGVSSQL----CIRFHPVNNNFLSVGNANKEITVFNF 302
+W+ + + + V + C+ F+P + L+ G+A+K + +++
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 311
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLC-IRFHPVNN-- 285
GH DV D I S S DKT++VW + KG C+ + G + + +R P
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 286 ----NFLSVGNANKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCGDAQGCI 338
+S GN +K + +N + +I + +S + ++ G L+ G I
Sbjct: 164 DDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 39/242 (16%)
Query: 227 LNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELTKGDC-----IRVIYGVSSQLCIRF 280
L GH+ VT S+ + S+S DKT+ W+LT D +R G S
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS------- 65
Query: 281 HPVNNNFLSVGNA-------NKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCG 332
H V + L+ A +K + +++ +TG ++ V S+V S+D D ++ G
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNL 392
I +++ A H + R P S ++++ G + + NL
Sbjct: 126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM--VKAWNL 183
Query: 393 SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452
+ F + + G+ + +L +P G I + +D + ++LA
Sbjct: 184 NQFQIEADFIGHNSNINTLTASP----------------DGTLIASAGKDGEIMLWNLAA 227
Query: 453 PK 454
K
Sbjct: 228 KK 229
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 224 IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPV 283
++ GHS V D +++ Y S+S DKT+R+W++ G+ + G S +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 284 NNNFLSVGNANKEITVFNF 302
+ + G+ +K I V+
Sbjct: 118 KASMIISGSRDKTIKVWTI 136
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 23/146 (15%)
Query: 207 ASDGTLTVCTVSDPPKVIKLLN-----------GHSKDVTDFDFSSNNQYIASSSMDKTV 255
A D ++T+ + + K++K N GH+ ++ S + IAS+ D +
Sbjct: 162 ADDDSVTIISAGND-KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 256 RVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL---- 311
+W L + + + F P N +L+ A I VF+ ++ L
Sbjct: 221 MLWNLAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATATG-IKVFSLDPQYLVDDLRPEF 278
Query: 312 -----VVDSEVTSMDHDHTGQLLFCG 332
+ S+ GQ LF G
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAG 304
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLC-IRFHPVNN-- 285
GH DV D I S S DKT++VW + KG C+ + G + + +R P
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 286 ----NFLSVGNANKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCGDAQGCI 338
+S GN +K + +N + +I + +S + ++ G L+ G I
Sbjct: 164 DDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 39/242 (16%)
Query: 227 LNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELTKGDC-----IRVIYGVSSQLCIRF 280
L GH+ VT S+ + S+S DKT+ W+LT D +R G S
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS------- 65
Query: 281 HPVNNNFLSVGNA-------NKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCG 332
H V + L+ A +K + +++ +TG ++ V S+V S+D D ++ G
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNL 392
I +++ A H + R P S ++++ G + + NL
Sbjct: 126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM--VKAWNL 183
Query: 393 SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452
+ F + + G+ + +L +P G I + +D + ++LA
Sbjct: 184 NQFQIEADFIGHNSNINTLTASP----------------DGTLIASAGKDGEIMLWNLAA 227
Query: 453 PK 454
K
Sbjct: 228 KK 229
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 224 IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPV 283
++ GHS V D +++ Y S+S DKT+R+W++ G+ + G S +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 284 NNNFLSVGNANKEITVFNF 302
+ + G+ +K I V+
Sbjct: 118 KASMIISGSRDKTIKVWTI 136
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 23/146 (15%)
Query: 207 ASDGTLTVCTVSDPPKVIKLLN-----------GHSKDVTDFDFSSNNQYIASSSMDKTV 255
A D ++T+ + + K++K N GH+ ++ S + IAS+ D +
Sbjct: 162 ADDDSVTIISAGND-KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 256 RVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL---- 311
+W L + + + F P N +L+ A I VF+ ++ L
Sbjct: 221 MLWNLAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATATG-IKVFSLDPQYLVDDLRPEF 278
Query: 312 -----VVDSEVTSMDHDHTGQLLFCG 332
+ S+ GQ LF G
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAG 304
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN 243
D A V L F S +LA G++D T+ + + + + H ++ +S +N
Sbjct: 276 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 335
Query: 244 QYI-ASSSMDKTVRVWELTK 262
+ I ASS D+ + VW+L+K
Sbjct: 336 ETILASSGTDRRLHVWDLSK 355
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-------------PPKVIKLLNG 229
F+ K + +++ + +LA +D L V +S PP+++ + G
Sbjct: 319 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 378
Query: 230 HSKDVTDFDFSSNNQYIA-SSSMDKTVRVWELTKG 263
H+ ++DF ++ N +I S S D ++VW++ +
Sbjct: 379 HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN 243
D A V L F S +LA G++D T+ + + + + H ++ +S +N
Sbjct: 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 333
Query: 244 QYI-ASSSMDKTVRVWELTK 262
+ I ASS D+ + VW+L+K
Sbjct: 334 ETILASSGTDRRLHVWDLSK 353
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-------------PPKVIKLLNG 229
F+ K + +++ + +LA +D L V +S PP+++ + G
Sbjct: 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 376
Query: 230 HSKDVTDFDFSSNNQYIA-SSSMDKTVRVWELTKG 263
H+ ++DF ++ N +I S S D ++VW++ +
Sbjct: 377 HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLC-IRFHPVNN-- 285
GH DV D I S S DKT++VW + KG C+ + G + + +R P
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 286 ----NFLSVGNANKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCGDAQGCI 338
+S GN +K + +N + +I + +S + ++ G L+ G I
Sbjct: 164 DDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 39/242 (16%)
Query: 227 LNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELTKGDC-----IRVIYGVSSQLCIRF 280
L GH+ VT S+ + S+S DKT+ W+LT D +R G S
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS------- 65
Query: 281 HPVNNNFLSVGNA-------NKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCG 332
H V + L+ A +K + +++ +TG ++ V S+V S+D D ++ G
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNL 392
I +++ A H + R P S ++++ G + + NL
Sbjct: 126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM--VKAWNL 183
Query: 393 SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452
+ F + + G+ + +L +P G I + +D + ++LA
Sbjct: 184 NQFQIEADFIGHNSNINTLTASP----------------DGTLIASAGKDGEIMLWNLAA 227
Query: 453 PK 454
K
Sbjct: 228 KK 229
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 224 IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPV 283
++ GHS V D +++ Y S+S DKT+R+W++ G+ + G S +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 284 NNNFLSVGNANKEITVFNF 302
+ + G+ +K I V+
Sbjct: 118 KASMIISGSRDKTIKVWTI 136
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 23/146 (15%)
Query: 207 ASDGTLTVCTVSDPPKVIKLLN-----------GHSKDVTDFDFSSNNQYIASSSMDKTV 255
A D ++T+ + + K++K N GH+ ++ S + IAS+ D +
Sbjct: 162 ADDDSVTIISAGND-KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 256 RVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL---- 311
+W L + + + F P N +L+ A I VF+ ++ L
Sbjct: 221 MLWNLAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATATG-IKVFSLDPQYLVDDLRPEF 278
Query: 312 -----VVDSEVTSMDHDHTGQLLFCG 332
+ S+ GQ LF G
Sbjct: 279 AGYSAAAEPHAVSLAWSADGQTLFAG 304
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 199 SSDLLAYGASDGTLTVCTVSDPPKVIKL----LNGHSKDVTDFDFSSNNQYIASSSMDKT 254
++D++ + D ++ + ++ K + L GHS V D SS+ Q+ S S D
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 255 VRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFN 301
+R+W+L G R G + + ++N + + ++ I ++N
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Query: 209 DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268
D T+ V +S+ K+ L GH+ V+ S + AS D V +W+L +G +
Sbjct: 540 DKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598
Query: 269 IYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTG-- 326
+ S + F P N + I +++ + I++ L VD + + D++G
Sbjct: 599 LEANSVIHALCFSP--NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPA 656
Query: 327 ----QLLFC 331
++++C
Sbjct: 657 ATKRKVIYC 665
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLC-IRFHPVNN-- 285
GH DV D I S S DKT++VW + KG C+ + G + + +R P
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKAD 157
Query: 286 ----NFLSVGNANKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCGDAQGCI 338
+S GN +K + +N + +I + +S + ++ G L+ G I
Sbjct: 158 DDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 214
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 39/242 (16%)
Query: 227 LNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELTKGDC-----IRVIYGVSSQLCIRF 280
L GH+ VT S+ + S+S DKT+ W+LT D +R G S
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS------- 59
Query: 281 HPVNNNFLSVGNA-------NKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCG 332
H V + L+ A +K + +++ +TG ++ V S+V S+D D ++ G
Sbjct: 60 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 119
Query: 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNL 392
I +++ A H + R P S ++++ G + + NL
Sbjct: 120 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM--VKAWNL 177
Query: 393 SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452
+ F + + G+ + +L +P G I + +D + ++LA
Sbjct: 178 NQFQIEADFIGHNSNINTLTASP----------------DGTLIASAGKDGEIMLWNLAA 221
Query: 453 PK 454
K
Sbjct: 222 KK 223
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 224 IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPV 283
++ GHS V D +++ Y S+S DKT+R+W++ G+ + G S +
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 284 NNNFLSVGNANKEITVFNF 302
+ + G+ +K I V+
Sbjct: 112 KASMIISGSRDKTIKVWTI 130
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 23/146 (15%)
Query: 207 ASDGTLTVCTVSDPPKVIKLLN-----------GHSKDVTDFDFSSNNQYIASSSMDKTV 255
A D ++T+ + + K++K N GH+ ++ S + IAS+ D +
Sbjct: 156 ADDDSVTIISAGND-KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 214
Query: 256 RVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL---- 311
+W L + + + F P N +L+ A I VF+ ++ L
Sbjct: 215 MLWNLAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATATG-IKVFSLDPQYLVDDLRPEF 272
Query: 312 -----VVDSEVTSMDHDHTGQLLFCG 332
+ S+ GQ LF G
Sbjct: 273 AGYSKAAEPHAVSLAWSADGQTLFAG 298
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 433 GEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE--NLLASSDLYGIVI 490
G+ + S D + +++ H ++ L GH PV V W H + +LAS G V+
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 491 VWKR 494
+WK
Sbjct: 81 IWKE 84
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 433 GEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE--NLLASSDLYGIVI 490
G+ + S D + +++ H ++ L GH PV V W H + +LAS G V+
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 491 VWKR 494
+WK
Sbjct: 81 IWKE 84
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 170 PEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNG 229
PE FVG + A+V + GH +++ G+ D TL V V+ K + +L+G
Sbjct: 256 PEENPYFVG---VLRGHXASVRTVS-GH--GNIVVSGSYDNTLIVWDVA-QXKCLYILSG 308
Query: 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYG 271
H+ + + + S+S D T+R+W+L G+ + G
Sbjct: 309 HTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQG 350
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA 247
+ +T L+F + + GA D + V S K + L+GH V ++ + +
Sbjct: 123 SVITCLQF---EDNYVITGADDKXIRVYD-SINKKFLLQLSGHDGGVWALKYA-HGGILV 177
Query: 248 SSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNN-NFLSVGNANKEITVFNFSTG 305
S S D+TVRVW++ KG C V G +S + C+ N ++ G+ + + V+
Sbjct: 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW----- 232
Query: 306 RIIKKLVVDSEVTSMDHDHTGQLLF 330
KL +S V +H L+F
Sbjct: 233 ----KLPKESSVPDHGEEHDYPLVF 253
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 209 DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268
D L T + P + +L GH V S + + S S D T+ VW++ + C+ +
Sbjct: 248 DYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYI 305
Query: 269 IYGVSSQL 276
+ G + ++
Sbjct: 306 LSGHTDRI 313
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 412 KLAPRVHSIRASFCPLLSLEKGE--YIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVV 469
K P+ ++R +++ + E Y++ G++D + YD K + +L GH V
Sbjct: 109 KFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKK--FLLQLSGHDGGVW 166
Query: 470 AVAWNHGENLLASS 483
A+ + HG L++ S
Sbjct: 167 ALKYAHGGILVSGS 180
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 227 LNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNN 286
L+GH+ + D +Y + S D ++++W+++ G C+ + F P N
Sbjct: 70 LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNY 129
Query: 287 FLSV 290
FL++
Sbjct: 130 FLAI 133
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 206 GASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD--------KTVRV 257
G DG ++ VS+ + + ++ H K ++D FS + Y +SS D T++V
Sbjct: 193 GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252
Query: 258 WELTKGDC 265
+ + DC
Sbjct: 253 LKKYETDC 260
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFL 288
H+ DV + + + S + D + ++W++ +G C + G S + I F P N N
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAF 241
Query: 289 SVGNANKEITVFNFSTGRIIKKLVVDS---EVTSMDHDHTGQLLFCG-DAQGCIYSISME 344
+ G+ + +F+ + + D+ +TS+ +G+LL G D C +++
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 345 SHSGALSRSHRHRTT 359
+ + H +R +
Sbjct: 302 ADRAGVLAGHDNRVS 316
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFL 288
H+ DV + + + S + D + ++W++ +G C + G S + I F P N N
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAF 252
Query: 289 SVGNANKEITVFNFSTGRIIKKLVVDS---EVTSMDHDHTGQLLFCG-DAQGCIYSISME 344
+ G+ + +F+ + + D+ +TS+ +G+LL G D C +++
Sbjct: 253 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 312
Query: 345 SHSGALSRSHRHRTT 359
+ + H +R +
Sbjct: 313 ADRAGVLAGHDNRVS 327
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFL 288
H+ DV + + + S + D + ++W++ +G C + G S + I F P N N
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAF 241
Query: 289 SVGNANKEITVFNFSTGRIIKKLVVDS---EVTSMDHDHTGQLLFCG-DAQGCIYSISME 344
+ G+ + +F+ + + D+ +TS+ +G+LL G D C +++
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 345 SHSGALSRSHRHRTT 359
+ + H +R +
Sbjct: 302 ADRAGVLAGHDNRVS 316
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFL 288
H+ DV + + + S + D + ++W++ +G C + G S + I F P N N
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAF 241
Query: 289 SVGNANKEITVFNFSTGRIIKKLVVDS---EVTSMDHDHTGQLLFCG-DAQGCIYSISME 344
+ G+ + +F+ + + D+ +TS+ +G+LL G D C +++
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 345 SHSGALSRSHRHRTT 359
+ + H +R +
Sbjct: 302 ADRAGVLAGHDNRVS 316
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFL 288
H+ DV + + + S + D + ++W++ +G C + G S + I F P N N
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAF 241
Query: 289 SVGNANKEITVFNFSTGRIIKKLVVDS---EVTSMDHDHTGQLLFCG-DAQGCIYSISME 344
+ G+ + +F+ + + D+ +TS+ +G+LL G D C +++
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 345 SHSGALSRSHRHRTT 359
+ + H +R +
Sbjct: 302 ADRAGVLAGHDNRVS 316
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 433 GEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVW 492
G IV G E+ + ++ + +N L HR P+V+V WN + S D+ + I+W
Sbjct: 120 GNSIVTGVENGELRLWN---KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 210 GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVI 269
G + V +++ KL+ GH ++ +F+ N+ + S+S D T+R+W G+
Sbjct: 227 GAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF 285
Query: 270 YGVSSQLC 277
YG S +
Sbjct: 286 YGHSQSIV 293
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA 247
+ +T LKF S + L + D L + +V D L+ GH VTD + +
Sbjct: 140 SEITKLKF-FPSGEALISSSQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGRNVL 197
Query: 248 SSSMDKTVRVWELTKGDCI 266
S+S+D T+R+WE G I
Sbjct: 198 SASLDGTIRLWECGTGTTI 216
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA 247
+ +T LKF S + L + D L + +V D L+ GH VTD + +
Sbjct: 137 SEITKLKF-FPSGEALISSSQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGRNVL 194
Query: 248 SSSMDKTVRVWELTKGDCI 266
S+S+D T+R+WE G I
Sbjct: 195 SASLDGTIRLWECGTGTTI 213
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 197 HMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVR 256
+ DL+A G+ D + + +V P K+IK LN H V + + + + + SS D ++
Sbjct: 550 EIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLV-SSGADACIK 608
Query: 257 VWEL 260
W +
Sbjct: 609 RWNV 612
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 440 SEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE--NLLASSDLYGIVIVWKR 494
S D + +++ H ++ L GH PV V W H + +LAS G V +WK
Sbjct: 28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKE 84
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 197 HMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVR 256
+ DL+A G+ D + + +V P K+IK LN H V + + + + + SS D ++
Sbjct: 550 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV-SSGADACIK 608
Query: 257 VWEL 260
W +
Sbjct: 609 RWNV 612
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 433 GEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHG--ENLLASSDLYGIVI 490
G + S D +V +D+ + L+GH PV VAW H N+LAS VI
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 491 VWKR 494
+W+
Sbjct: 85 IWRE 88
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-------------PPKVIKLLNG 229
F+ K + +++ + +LA +D L V +S PP+++ + G
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGG 372
Query: 230 HSKDVTDFDFSSNNQY-IASSSMDKTVRVWELTK 262
H+ ++DF ++ N + I S S D ++VW++ +
Sbjct: 373 HTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 198 MSSDLLAYGASDGTLTVCTVSDPPKVIKLLN------GHSKDVTDFDFSSNNQYI-ASSS 250
+S LL+ + D T+ + +S PK K+++ GH+ V D + ++ + S +
Sbjct: 189 LSGHLLS-ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVA 247
Query: 251 MDKTVRVWELTKGDCIRVIYGVSSQL----CIRFHPVNNNFLSVGNANKEITVFNF 302
D+ + +W+ + + + V + C+ F+P + L+ G+A+K + +++
Sbjct: 248 DDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 208 SDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIR 267
SDG + V + + +++ GH+ + D S++ + + +D TVR W+L +G ++
Sbjct: 161 SDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219
Query: 268 VIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQ 327
+ +SQ+ + +L+VG + + V + + + + +S V S+ + G+
Sbjct: 220 Q-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278
>pdb|3D3K|A Chain A, Crystal Structure Of Human Edc3p
pdb|3D3K|B Chain B, Crystal Structure Of Human Edc3p
pdb|3D3K|C Chain C, Crystal Structure Of Human Edc3p
pdb|3D3K|D Chain D, Crystal Structure Of Human Edc3p
Length = 259
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSL-LAGGP 381
FC D+ + SIS E H LS + +H T +R+ +T V +L L GGP
Sbjct: 22 FCTDSGLVVPSISYELHKKLLSVAEKHGLTLERRLEMTGVCASQMALTLLGGP 74
>pdb|3D3J|A Chain A, Crystal Structure Of Human Edc3p
Length = 306
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSL-LAGGP 381
FC D+ + SIS E H LS + +H T +R+ +T V +L L GGP
Sbjct: 69 FCTDSGLVVPSISYELHKKLLSVAEKHGLTLERRLEMTGVCASQMALTLLGGP 121
>pdb|1Q0X|L Chain L, Anti-Morphine Antibody 9b1 Unliganded Form
pdb|1Q0Y|L Chain L, Anti-Morphine Antibody 9b1 Complexed With Morphine
Length = 212
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ T+ F S +L + TL VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPTVTLFPPSSEEL---STAKATL-VCTITDFYPGVVTVDWKVDGTPVTAGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|1F4W|L Chain L, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
pdb|1F4X|L Chain L, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
Length = 210
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T+ SNN+Y+ASS + T R WE
Sbjct: 164 TTNPSKQSNNKYMASSYLTLTARAWE 189
>pdb|1NC2|A Chain A, Crystal Structure Of Monoclonal Antibody 2d12.5 Fab
Complexed With Y- Dota
pdb|1NC2|C Chain C, Crystal Structure Of Monoclonal Antibody 2d12.5 Fab
Complexed With Y- Dota
pdb|1NC4|A Chain A, Crystal Structure Of Monoclonal Antibody 2d12.5 Fab
Complexed With Gd- Dota
pdb|1NC4|C Chain C, Crystal Structure Of Monoclonal Antibody 2d12.5 Fab
Complexed With Gd- Dota
Length = 215
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|4AMK|L Chain L, Fab Fragment Of Antiporphrin Antibody 13g10
Length = 212
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|4AT6|B Chain B, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|D Chain D, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|F Chain F, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|I Chain I, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|K Chain K, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|L Chain L, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|N Chain N, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|P Chain P, Fab Fragment Of Antiporphyrin Antibody 14h7
Length = 212
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|2ZPK|L Chain L, Crystal Structure Of P20.1 Fab Fragment In Complex With
Its Antigen Peptide
pdb|2ZPK|M Chain M, Crystal Structure Of P20.1 Fab Fragment In Complex With
Its Antigen Peptide
Length = 212
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|4A6Y|L Chain L, Crystal Structure Of Fab Fragment Of Anti-(4-Hydroxy-3-
Nitrophenyl)-Acetyl Murine Germline Antibody Bbe6.12h3
Length = 211
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|1F4Y|L Chain L, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
Length = 210
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|1GIG|L Chain L, Refined Three-Dimensional Structure Of The Fab Fragment Of
A Murine Igg1, Lambda Antibody
pdb|2VIR|A Chain A, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|2VIS|A Chain A, Influenza Virus Hemagglutinin, (Escape) Mutant With Thr
131 Replaced By Ile, Complexed With A Neutralizing
Antibody
pdb|2VIT|A Chain A, Influenza Virus Hemagglutinin, Mutant With Thr 155
Replaced By Ile, Complexed With A Neutralizing Antibody
Length = 210
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|1ETZ|L Chain L, The Three-Dimensional Structure Of An Anti-Sweetener Fab,
Nc10.14, Shows The Extent Of Structural Diversity In
Antigen Recognition By Immunoglobulins
pdb|1ETZ|A Chain A, The Three-Dimensional Structure Of An Anti-Sweetener Fab,
Nc10.14, Shows The Extent Of Structural Diversity In
Antigen Recognition By Immunoglobulins
Length = 215
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFTPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|1NGQ|L Chain L, N1g9 (igg1-lambda) Fab Fragment
pdb|1NGP|L Chain L, N1g9 (Igg1-Lambda) Fab Fragment Complexed With
(4-Hydroxy-3- Nitrophenyl) Acetate
Length = 215
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|3KS0|L Chain L, Crystal Structure Of The Heme Domain Of Flavocytochrome B2
In Complex With Fab B2b4
pdb|3KS0|J Chain J, Crystal Structure Of The Heme Domain Of Flavocytochrome B2
In Complex With Fab B2b4
Length = 214
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|1M2T|B Chain B, Mistletoe Lectin I From Viscum Album In Complex With
Adenine Monophosphate. Crystal Structure At 1.9 A
Resolution
pdb|2R9K|B Chain B, Crystal Structure Of Misteltoe Lectin I In Complex With
Phloretamide
Length = 263
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 215 CTVSDPPKVIKLLNGHSKDVTDFDFSSNN--QYIASSSMDKTVRVWELTKGDCIR 267
CT S+P I NG + DV D DF N Q S S + ++W + K IR
Sbjct: 5 CTASEPIVRIVGRNGMTVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKKDGTIR 59
>pdb|3RHW|K Chain K, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|L Chain L, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|M Chain M, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|N Chain N, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|O Chain O, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|K Chain K, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|L Chain L, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|M Chain M, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|N Chain N, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|O Chain O, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|K Chain K, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|L Chain L, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|M Chain M, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|N Chain N, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|O Chain O, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|K Chain K, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|L Chain L, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|M Chain M, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|N Chain N, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|O Chain O, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 210
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|1JNH|A Chain A, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNH|C Chain C, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNH|E Chain E, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNH|G Chain G, Crystal Structure Of Fab-Estradiol Complexes
Length = 212
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|1MFB|L Chain L, High Resolution Structures Of Antibody Fab Fragment
Complexed With Cell-Surface Oligosaccharide Of
Pathogenic Salmonella
pdb|1MFC|L Chain L, High Resolution Structures Of Antibody Fab Fragment
Complexed With Cell-Surface Oligosaccharide Of
Pathogenic Salmonella
pdb|1MFD|L Chain L, The Solution Structure Of A Trisaccharide-Antibody
Complex: Comparison Of Nmr Measurements With A Crystal
Structure
Length = 215
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|1JN6|A Chain A, Crystal Structure Of Fab-Estradiol Complexes
Length = 210
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|1MFE|L Chain L, Recognition Of A Cell-Surface Oligo-Saccharide Of
Pathogenic Salmonella By An Antibody Fab Fragment
Length = 215
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|3D7W|B Chain B, Mistletoe Lectin I In Complex With Zeatin
Length = 265
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 215 CTVSDPPKVIKLLNGHSKDVTDFDFSSNN--QYIASSSMDKTVRVWELTKGDCIR 267
CT S+P I NG + DV D DF N Q S S + ++W + K IR
Sbjct: 5 CTASEPIVRIVGRNGMTVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKKDGTIR 59
>pdb|2XZQ|L Chain L, Crystal Structure Analysis Of The Anti-(4-Hydroxy-3-
Nitrophenyl)-Acetyl Murine Germline Monoclonal Antibody
Bbe6.12h3 Fab Fragment In Complex With A Phage Display
Derived Dodecapeptide Yqlrpnaetlrf
Length = 211
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD--PPKVIKLLNG------HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V +G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWSGDGTPVEQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|1NJ9|L Chain L, Cocaine Hydrolytic Antibody 15a10
pdb|1NJ9|A Chain A, Cocaine Hydrolytic Antibody 15a10
Length = 212
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T R WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTAREWE 189
>pdb|2Y06|L Chain L, Crystal Structure Analysis Of The Anti-(4-Hydroxy-3-
Nitrophenyl) -Acetyl Murine Germline Antibody Bbe6.12h3
Fab Fragment In Complex With A Phage Display Derived
Dodecapeptide Gdprpsyishll
pdb|2Y36|L Chain L, Crystal Structure Analysis Of The Anti-(4-Hydroxy-3-
Nitrophenyl)- Acetyl Murine Germline Antibody Bbe6.12h3
Fab Fragment In Complex With A Phage Display Derived
Dodecapeptide Dlwttaiptips
Length = 211
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A++ VCT++D P V+ + ++G +
Sbjct: 108 VLGQPKSSPSVTLFPPSSEEL----ATNTATLVCTITDFYPGVVTVDWTVDGTPVTQGME 163
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + T WE
Sbjct: 164 TTQPSKQSNNKYMASSYLTLTAAAWE 189
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 82/218 (37%), Gaps = 21/218 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKL--LNGHSKDVTDFDFSSNNQYI 246
A+ LKF +LL + D L + + V + GH +V D+ + I
Sbjct: 112 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI 171
Query: 247 ASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR 306
S MD ++++W + R++ + + N F+S ++I +FST R
Sbjct: 172 MSCGMDHSLKLWRINSK---RMMNAIKESYDYNPNKTNRPFIS-----QKIHFPDFST-R 222
Query: 307 IIKKLVVDSEVTSMDHDHTGQLLF---CGDAQGCIYSISMESHSGALSRSHRHRTT-GKR 362
I + VD G L+ C +A C ME + S + T G+
Sbjct: 223 DIHRNYVDCVRW------LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF 276
Query: 363 KCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400
+ Y FS+ +L Q G L + + +E
Sbjct: 277 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 314
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 82/218 (37%), Gaps = 21/218 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKL--LNGHSKDVTDFDFSSNNQYI 246
A+ LKF +LL + D L + + V + GH +V D+ + I
Sbjct: 153 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI 212
Query: 247 ASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR 306
S MD ++++W + R++ + + N F+S ++I +FST R
Sbjct: 213 MSCGMDHSLKLWRINSK---RMMNAIKESYDYNPNKTNRPFIS-----QKIHFPDFST-R 263
Query: 307 IIKKLVVDSEVTSMDHDHTGQLLF---CGDAQGCIYSISMESHSGALSRSHRHRTT-GKR 362
I + VD G L+ C +A C ME + S + T G+
Sbjct: 264 DIHRNYVDCVRW------LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF 317
Query: 363 KCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400
+ Y FS+ +L Q G L + + +E
Sbjct: 318 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 355
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 82/218 (37%), Gaps = 21/218 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKL--LNGHSKDVTDFDFSSNNQYI 246
A+ LKF +LL + D L + + V + GH +V D+ + I
Sbjct: 117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI 176
Query: 247 ASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR 306
S MD ++++W + R++ + + N F+S ++I +FST R
Sbjct: 177 MSCGMDHSLKLWRINSK---RMMNAIKESYDYNPNKTNRPFIS-----QKIHFPDFST-R 227
Query: 307 IIKKLVVDSEVTSMDHDHTGQLLF---CGDAQGCIYSISMESHSGALSRSHRHRTT-GKR 362
I + VD G L+ C +A C ME + S + T G+
Sbjct: 228 DIHRNYVDCVRW------LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF 281
Query: 363 KCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400
+ Y FS+ +L Q G L + + +E
Sbjct: 282 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 82/218 (37%), Gaps = 21/218 (9%)
Query: 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKL--LNGHSKDVTDFDFSSNNQYI 246
A+ LKF +LL + D L + + V + GH +V D+ + I
Sbjct: 116 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI 175
Query: 247 ASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR 306
S MD ++++W + R++ + + N F+S ++I +FST R
Sbjct: 176 MSCGMDHSLKLWRINSK---RMMNAIKESYDYNPNKTNRPFIS-----QKIHFPDFST-R 226
Query: 307 IIKKLVVDSEVTSMDHDHTGQLLF---CGDAQGCIYSISMESHSGALSRSHRHRTT-GKR 362
I + VD G L+ C +A C ME + S + T G+
Sbjct: 227 DIHRNYVDCVRW------LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF 280
Query: 363 KCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400
+ Y FS+ +L Q G L + + +E
Sbjct: 281 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 318
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 192 ILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM 251
L G ++D+ + D T+ PK ++ H+ V D +S + + ++S
Sbjct: 56 FLIAGSWANDVRCWEVQDSGQTI------PKAQQM---HTGPVLDVCWSDDGSKVFTASC 106
Query: 252 DKTVRVWELTKGDCIRV 268
DKT ++W+L+ I++
Sbjct: 107 DKTAKMWDLSSNQAIQI 123
>pdb|2B0S|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Mn Peptide
pdb|2B1A|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug1033 Peptide
pdb|2B1H|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug29 Peptide
Length = 215
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 167 RQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD--PPKVI 224
R GP+ + + Q KAA ++ F S +L A A+ VC +SD P V
Sbjct: 96 RGGPDWVFGGGTKLTVLAQPKAAPSVTLFPPSSEELQANKAT----LVCLISDFYPGAVT 151
Query: 225 KLLNGHSKDV------TDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIY 270
S V T SNN+Y ASS + T W+ K +V +
Sbjct: 152 VAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTH 203
>pdb|1PUM|B Chain B, Mistletoe Lectin I In Complex With Galactose
pdb|1SZ6|B Chain B, Mistletoe Lectin I From Viscum Album. Crystal Structure At
2.05 A Resolution
Length = 263
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 215 CTVSDPPKVIKLLNGHSKDVTDFDFSSNN--QYIASSSMDKTVRVWELTKGDCIR 267
C+ S+P I NG + DV D DF N Q S S + ++W + K IR
Sbjct: 5 CSASEPIVRIVGRNGMTVDVRDDDFQDGNQIQLWPSKSNNDPNQLWTIKKDGTIR 59
>pdb|1PUU|B Chain B, Mistletoe Lectin I In Complex With Lactose
Length = 263
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 215 CTVSDPPKVIKLLNGHSKDVTDFDFSSNN--QYIASSSMDKTVRVWELTKGDCIR 267
C+ S+P I NG + DV D DF N Q S S + ++W + K IR
Sbjct: 5 CSASEPIVRIVGRNGMTVDVRDDDFQDGNQIQLWPSKSNNDPNQLWTIKKDGTIR 59
>pdb|3O5W|B Chain B, Binding Of Kinetin In The Active Site Of Mistletoe Lectin
I
Length = 263
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 215 CTVSDPPKVIKLLNGHSKDVTDFDFSSNN--QYIASSSMDKTVRVWELTKGDCIR 267
C+ S+P I NG + DV D DF N Q S S + ++W + K IR
Sbjct: 5 CSASEPTVRIVGRNGMTVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKKDGTIR 59
>pdb|2RG9|B Chain B, Crystal Structure Of Viscum Album Mistletoe Lectin I In
Native State At 1.95 A Resolution, Comparison Of
Structure Active Site Conformation In Ricin And In
Viscumin
Length = 263
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 215 CTVSDPPKVIKLLNGHSKDVTDFDFSSNN--QYIASSSMDKTVRVWELTKGDCIR 267
C+ S+P I NG + DV D DF N Q S S + ++W + K IR
Sbjct: 5 CSASEPIVRIVGRNGMTVDVRDDDFQDGNQIQLWPSKSNNDPNQLWTIKKDGTIR 59
>pdb|4A6Y|A Chain A, Crystal Structure Of Fab Fragment Of Anti-(4-Hydroxy-3-
Nitrophenyl)-Acetyl Murine Germline Antibody Bbe6.12h3
Length = 211
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKDVTD 236
Q K++ ++ F S +L A+ VCT++D P V+ + ++G + T
Sbjct: 111 QPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTQGMETTQ 166
Query: 237 FDFSSNNQYIASSSMDKTVRVWE 259
SNN+Y+ASS + T R WE
Sbjct: 167 PSKQSNNKYMASSYLTLTARAWE 189
>pdb|1YUH|L Chain L, Fab Fragment
pdb|1YUH|A Chain A, Fab Fragment
Length = 211
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKL---LNG----HSKD 233
+ Q K++ ++ F S +L A+ VCT++D P V+ + ++G +
Sbjct: 107 VLGQPKSSPSVTLFPPSSEELETNKAT----LVCTITDFYPGVVTVDWKVDGTPVTEGME 162
Query: 234 VTDFDFSSNNQYIASSSMDKTVRVWE 259
T SNN+Y+ASS + + R WE
Sbjct: 163 TTQPSKQSNNKYMASSYLTLSARAWE 188
>pdb|1SM3|L Chain L, Crystal Structure Of The Tumor Specific Antibody Sm3
Complex With Its Peptide Epitope
Length = 215
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 214 VCTVSD-PPKVIKL---LNG----HSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259
VCT++D P V+ + ++G + T SNN+Y+ASS + T R WE
Sbjct: 136 VCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWE 189
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 436 IVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWN-HGENLLASSDLYGIVIVWKR 494
+ G+ V DL SC + LQGHR ++AV+W+ + +LA++ V +W
Sbjct: 159 VAVGTRGPKVQLCDLKSG--SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Query: 495 AKTS 498
+ S
Sbjct: 217 RRAS 220
>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN 243
D+ V + +G + DL A+ +S G++ T+ + +GH K +F+ N
Sbjct: 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITI-----LCDKFSGHPKGYAYIEFAERN 89
Query: 244 QYIASSSMDKTV 255
A+ +MD+TV
Sbjct: 90 SVDAAVAMDETV 101
>pdb|1AQK|L Chain L, Three-Dimensional Structure Of A Human Fab With High
Affinity For Tetanus Toxoid
Length = 216
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD--PPKVIKLLNGHSKDV----- 234
+ Q KAA ++ F S +L A A+ VC +SD P V S V
Sbjct: 109 VLGQPKAAPSVTLFPPSSEELQANKAT----LVCLISDFYPGAVTVAWKADSSPVNAGVE 164
Query: 235 -TDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIY 270
T SNN+Y ASS + T W+ K +V +
Sbjct: 165 TTKPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTH 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,596,827
Number of Sequences: 62578
Number of extensions: 528027
Number of successful extensions: 1517
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 382
length of query: 498
length of database: 14,973,337
effective HSP length: 103
effective length of query: 395
effective length of database: 8,527,803
effective search space: 3368482185
effective search space used: 3368482185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)