Query 010871
Match_columns 498
No_of_seqs 1006 out of 2571
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 05:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.2E-44 2.6E-49 318.3 26.7 309 151-493 127-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-44 2.5E-49 318.4 26.3 295 181-497 109-441 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 4.6E-43 1E-47 312.2 23.0 283 184-493 172-458 (459)
4 KOG0265 U5 snRNP-specific prot 100.0 6.6E-41 1.4E-45 286.2 27.4 294 181-494 41-337 (338)
5 KOG0286 G-protein beta subunit 100.0 2.8E-39 6E-44 275.2 32.9 288 179-493 47-343 (343)
6 KOG0318 WD40 repeat stress pro 100.0 2.6E-38 5.6E-43 289.2 37.9 350 130-497 128-562 (603)
7 KOG0279 G protein beta subunit 100.0 3.6E-38 7.7E-43 266.9 32.6 290 179-496 7-314 (315)
8 KOG0282 mRNA splicing factor [ 100.0 2.1E-40 4.6E-45 300.2 20.0 298 177-493 204-503 (503)
9 KOG0315 G-protein beta subunit 100.0 5.4E-38 1.2E-42 261.5 29.6 277 200-497 10-290 (311)
10 KOG0295 WD40 repeat-containing 100.0 3.1E-37 6.7E-42 270.2 23.9 291 180-494 101-405 (406)
11 KOG0293 WD40 repeat-containing 100.0 3.6E-37 7.8E-42 273.7 23.4 290 181-496 218-514 (519)
12 KOG0315 G-protein beta subunit 100.0 1E-35 2.2E-40 248.0 30.1 297 150-474 9-309 (311)
13 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-37 3.8E-42 276.7 20.1 263 156-449 192-458 (459)
14 KOG0296 Angio-associated migra 100.0 1.5E-35 3.3E-40 259.8 29.1 295 181-495 58-398 (399)
15 KOG0645 WD40 repeat protein [G 100.0 1.4E-34 3.1E-39 244.1 31.4 289 180-496 7-312 (312)
16 KOG0284 Polyadenylation factor 100.0 9.5E-37 2.1E-41 270.8 18.1 284 187-497 96-382 (464)
17 KOG0266 WD40 repeat-containing 100.0 7.7E-35 1.7E-39 286.9 33.4 293 180-495 151-454 (456)
18 KOG0285 Pleiotropic regulator 100.0 2.1E-35 4.5E-40 258.1 24.6 285 181-495 145-439 (460)
19 KOG0279 G protein beta subunit 100.0 2.9E-34 6.3E-39 243.2 28.2 255 175-451 51-313 (315)
20 KOG0273 Beta-transducin family 100.0 6.4E-34 1.4E-38 257.2 31.1 282 188-495 236-523 (524)
21 cd00200 WD40 WD40 domain, foun 100.0 2.7E-33 5.9E-38 261.5 36.5 284 181-493 3-289 (289)
22 KOG0281 Beta-TrCP (transducin 100.0 1.1E-35 2.3E-40 258.9 15.7 271 187-497 197-479 (499)
23 PLN00181 protein SPA1-RELATED; 100.0 8.5E-33 1.8E-37 292.6 40.3 291 183-494 479-792 (793)
24 KOG0273 Beta-transducin family 100.0 9.3E-34 2E-38 256.2 27.3 292 183-497 174-484 (524)
25 KOG0291 WD40-repeat-containing 100.0 6.7E-33 1.4E-37 263.9 33.6 283 187-497 307-614 (893)
26 KOG0643 Translation initiation 100.0 4.3E-33 9.4E-38 234.6 28.5 290 182-496 5-318 (327)
27 KOG0263 Transcription initiati 100.0 3.1E-34 6.8E-39 275.3 23.7 241 187-496 378-650 (707)
28 KOG0316 Conserved WD40 repeat- 100.0 3.3E-33 7.1E-38 231.1 26.3 282 181-493 11-297 (307)
29 KOG0291 WD40-repeat-containing 100.0 8.5E-32 1.8E-36 256.4 37.9 383 63-496 84-509 (893)
30 KOG0286 G-protein beta subunit 100.0 7.7E-33 1.7E-37 236.0 26.7 275 146-449 62-343 (343)
31 KOG0650 WD40 repeat nucleolar 100.0 5.2E-32 1.1E-36 251.5 30.6 434 10-493 202-733 (733)
32 KOG0263 Transcription initiati 100.0 6E-33 1.3E-37 266.5 24.9 205 180-399 444-650 (707)
33 KOG0319 WD40-repeat-containing 100.0 1.2E-32 2.6E-37 261.8 24.8 309 179-498 139-538 (775)
34 KOG0283 WD40 repeat-containing 100.0 9E-33 2E-37 267.5 23.9 251 184-451 264-576 (712)
35 KOG0284 Polyadenylation factor 100.0 5E-33 1.1E-37 247.2 16.4 276 146-452 103-381 (464)
36 KOG0292 Vesicle coat complex C 100.0 9.3E-32 2E-36 260.0 26.0 294 183-496 5-322 (1202)
37 KOG0275 Conserved WD40 repeat- 100.0 1.9E-33 4E-38 242.9 12.2 286 185-493 211-507 (508)
38 KOG0318 WD40 repeat stress pro 100.0 2.6E-30 5.6E-35 237.0 33.1 294 180-497 52-352 (603)
39 KOG0278 Serine/threonine kinas 100.0 2E-32 4.3E-37 228.4 16.6 286 182-497 9-299 (334)
40 KOG0319 WD40-repeat-containing 100.0 2.5E-31 5.5E-36 252.8 25.7 284 182-493 318-617 (775)
41 KOG0292 Vesicle coat complex C 100.0 1.5E-30 3.1E-35 251.8 30.8 325 141-495 11-397 (1202)
42 KOG0306 WD40-repeat-containing 100.0 2.6E-30 5.6E-35 246.2 32.0 298 180-495 100-580 (888)
43 KOG0288 WD40 repeat protein Ti 100.0 1.3E-32 2.9E-37 244.9 14.8 288 182-493 170-459 (459)
44 KOG1407 WD40 repeat protein [F 100.0 3.3E-30 7.2E-35 216.6 27.6 286 182-496 15-312 (313)
45 KOG0640 mRNA cleavage stimulat 100.0 6.1E-31 1.3E-35 226.1 23.2 293 181-495 106-426 (430)
46 KOG0647 mRNA export protein (c 100.0 7.5E-30 1.6E-34 218.8 28.8 282 187-483 27-311 (347)
47 KOG0772 Uncharacterized conser 100.0 1.6E-30 3.4E-35 237.7 23.2 291 182-492 162-484 (641)
48 KOG0285 Pleiotropic regulator 100.0 1E-30 2.3E-35 228.7 21.0 249 221-497 141-391 (460)
49 KOG0276 Vesicle coat complex C 100.0 4.2E-30 9E-35 240.0 26.2 283 182-491 8-295 (794)
50 KOG0316 Conserved WD40 repeat- 100.0 1.1E-29 2.3E-34 210.4 24.0 248 222-497 8-259 (307)
51 KOG0306 WD40-repeat-containing 100.0 1E-29 2.2E-34 242.2 27.3 283 182-496 368-665 (888)
52 KOG0645 WD40 repeat protein [G 100.0 4.2E-29 9.1E-34 211.1 27.6 271 153-451 29-311 (312)
53 KOG1446 Histone H3 (Lys4) meth 100.0 4.4E-28 9.6E-33 209.9 33.8 287 186-495 13-303 (311)
54 KOG0313 Microtubule binding pr 100.0 2.3E-29 4.9E-34 222.1 25.9 281 186-495 104-418 (423)
55 KOG0276 Vesicle coat complex C 100.0 5.4E-29 1.2E-33 232.6 29.2 239 141-399 15-258 (794)
56 KOG0268 Sof1-like rRNA process 100.0 1.3E-30 2.7E-35 228.6 16.9 283 181-495 60-345 (433)
57 KOG0266 WD40 repeat-containing 100.0 5E-29 1.1E-33 245.7 30.2 270 155-451 175-454 (456)
58 KOG0281 Beta-TrCP (transducin 100.0 4.3E-31 9.3E-36 230.3 13.6 233 230-497 196-430 (499)
59 KOG0300 WD40 repeat-containing 100.0 2.2E-29 4.7E-34 217.2 22.6 293 179-497 140-478 (481)
60 PTZ00420 coronin; Provisional 100.0 5.1E-28 1.1E-32 238.4 35.5 255 206-477 50-318 (568)
61 KOG0274 Cdc4 and related F-box 100.0 1.3E-28 2.9E-33 241.8 30.9 274 185-497 206-484 (537)
62 KOG0282 mRNA splicing factor [ 100.0 3.2E-30 6.8E-35 234.3 16.6 253 221-496 204-463 (503)
63 KOG0289 mRNA splicing factor [ 100.0 1.8E-28 3.9E-33 219.9 26.8 283 187-494 219-505 (506)
64 KOG0295 WD40 repeat-containing 100.0 2.5E-29 5.5E-34 220.7 20.5 271 148-450 117-405 (406)
65 KOG0277 Peroxisomal targeting 100.0 6.9E-29 1.5E-33 207.9 21.2 282 191-494 12-308 (311)
66 PLN00181 protein SPA1-RELATED; 100.0 8.5E-28 1.9E-32 254.5 35.0 264 209-496 457-739 (793)
67 KOG1036 Mitotic spindle checkp 100.0 6.2E-27 1.3E-31 201.8 29.8 279 187-485 13-294 (323)
68 KOG0283 WD40 repeat-containing 100.0 3.5E-28 7.5E-33 235.9 23.9 250 223-495 258-576 (712)
69 KOG0973 Histone transcription 100.0 1.1E-27 2.4E-32 238.2 27.5 294 186-496 12-356 (942)
70 KOG1273 WD40 repeat protein [G 100.0 7.9E-28 1.7E-32 207.5 22.7 287 190-496 26-323 (405)
71 KOG0294 WD40 repeat-containing 100.0 1.8E-27 3.9E-32 205.4 24.6 240 182-496 38-282 (362)
72 KOG0313 Microtubule binding pr 100.0 2.2E-27 4.7E-32 209.7 24.4 285 132-451 103-418 (423)
73 KOG0299 U3 snoRNP-associated p 100.0 1.9E-27 4.2E-32 215.0 24.6 294 182-493 137-454 (479)
74 KOG0310 Conserved WD40 repeat- 100.0 1.5E-27 3.3E-32 217.3 24.1 278 187-492 26-306 (487)
75 KOG0277 Peroxisomal targeting 100.0 4.6E-28 9.9E-33 203.0 18.9 245 187-450 60-308 (311)
76 KOG0296 Angio-associated migra 100.0 4.9E-27 1.1E-31 206.5 25.4 260 222-498 55-359 (399)
77 PTZ00421 coronin; Provisional 100.0 3.7E-26 8E-31 224.4 33.2 267 186-476 19-314 (493)
78 KOG0305 Anaphase promoting com 100.0 8.7E-27 1.9E-31 220.5 27.3 275 190-496 180-462 (484)
79 cd00200 WD40 WD40 domain, foun 100.0 3E-26 6.6E-31 213.8 30.8 246 225-496 3-250 (289)
80 KOG4283 Transcription-coupled 100.0 1E-26 2.2E-31 198.9 24.3 299 183-494 39-364 (397)
81 KOG1407 WD40 repeat protein [F 100.0 1E-26 2.2E-31 195.7 21.3 246 225-497 14-263 (313)
82 KOG2096 WD40 repeat protein [G 100.0 3.3E-26 7.2E-31 197.8 25.0 296 181-493 80-400 (420)
83 KOG0310 Conserved WD40 repeat- 100.0 1.5E-26 3.2E-31 210.9 23.5 243 183-451 64-309 (487)
84 PTZ00421 coronin; Provisional 100.0 2.3E-25 5.1E-30 218.8 33.9 208 182-400 70-292 (493)
85 KOG0641 WD40 repeat protein [G 100.0 8.4E-25 1.8E-29 180.3 31.4 291 187-495 32-349 (350)
86 KOG0293 WD40 repeat-containing 100.0 1.4E-26 3E-31 206.6 21.2 251 221-498 214-473 (519)
87 KOG0265 U5 snRNP-specific prot 100.0 3.4E-26 7.4E-31 196.3 21.9 249 182-449 85-336 (338)
88 KOG1446 Histone H3 (Lys4) meth 99.9 6.8E-25 1.5E-29 190.2 29.8 253 222-498 5-265 (311)
89 KOG1539 WD repeat protein [Gen 99.9 8.6E-25 1.9E-29 211.2 33.1 296 190-497 162-608 (910)
90 KOG1408 WD40 repeat protein [F 99.9 1.3E-25 2.9E-30 212.9 26.3 287 191-495 328-713 (1080)
91 KOG0274 Cdc4 and related F-box 99.9 2E-25 4.4E-30 219.4 28.2 245 180-461 242-490 (537)
92 KOG2055 WD40 repeat protein [G 99.9 9E-26 2E-30 204.3 23.3 289 187-495 213-512 (514)
93 PTZ00420 coronin; Provisional 99.9 7.3E-25 1.6E-29 216.2 31.5 210 181-400 68-295 (568)
94 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.8E-24 6.1E-29 202.9 33.5 274 200-497 1-281 (300)
95 KOG0321 WD40 repeat-containing 99.9 1.9E-25 4.1E-30 209.6 24.4 289 199-496 63-392 (720)
96 KOG0301 Phospholipase A2-activ 99.9 3.9E-25 8.4E-30 209.5 26.5 279 179-496 6-289 (745)
97 KOG0288 WD40 repeat protein Ti 99.9 3.9E-26 8.5E-31 203.8 16.9 248 179-448 211-458 (459)
98 KOG4328 WD40 protein [Function 99.9 5.4E-25 1.2E-29 199.1 24.4 301 181-497 180-497 (498)
99 KOG0264 Nucleosome remodeling 99.9 2.1E-25 4.6E-30 201.9 21.6 261 184-495 121-404 (422)
100 KOG0278 Serine/threonine kinas 99.9 6.6E-26 1.4E-30 189.6 15.9 201 185-399 98-298 (334)
101 KOG0308 Conserved WD40 repeat- 99.9 5.3E-26 1.2E-30 213.8 16.3 286 185-495 19-327 (735)
102 KOG1332 Vesicle coat complex C 99.9 2.4E-25 5.2E-30 185.7 18.4 259 179-452 3-287 (299)
103 KOG1408 WD40 repeat protein [F 99.9 8.5E-25 1.8E-29 207.5 21.9 306 179-496 70-535 (1080)
104 KOG0647 mRNA export protein (c 99.9 2.1E-24 4.6E-29 185.5 22.0 242 229-495 25-281 (347)
105 KOG0973 Histone transcription 99.9 1.5E-24 3.3E-29 216.0 24.2 257 178-453 60-357 (942)
106 KOG0289 mRNA splicing factor [ 99.9 3.6E-24 7.8E-29 192.5 24.2 247 180-450 254-505 (506)
107 KOG0641 WD40 repeat protein [G 99.9 6.6E-23 1.4E-27 169.2 29.5 249 182-451 84-349 (350)
108 KOG0643 Translation initiation 99.9 9.9E-24 2.1E-28 178.3 24.7 241 226-485 5-251 (327)
109 KOG0299 U3 snoRNP-associated p 99.9 2.4E-24 5.3E-29 195.1 21.1 240 184-440 199-444 (479)
110 KOG0646 WD40 repeat protein [G 99.9 6.2E-24 1.3E-28 192.8 23.1 273 205-495 12-307 (476)
111 KOG1036 Mitotic spindle checkp 99.9 1.5E-23 3.3E-28 180.9 24.2 241 230-496 12-263 (323)
112 KOG1034 Transcriptional repres 99.9 1.2E-23 2.5E-28 182.9 23.4 310 171-495 24-383 (385)
113 KOG0275 Conserved WD40 repeat- 99.9 4.8E-25 1E-29 191.0 14.1 275 151-449 225-507 (508)
114 KOG2445 Nuclear pore complex c 99.9 3E-23 6.5E-28 178.9 24.8 273 181-494 7-317 (361)
115 KOG0640 mRNA cleavage stimulat 99.9 2.1E-24 4.6E-29 186.0 17.7 252 224-496 105-384 (430)
116 KOG2106 Uncharacterized conser 99.9 5.7E-23 1.2E-27 188.1 28.0 295 185-495 285-626 (626)
117 KOG1274 WD40 repeat protein [G 99.9 4.3E-23 9.3E-28 201.7 28.9 286 184-492 10-297 (933)
118 KOG0268 Sof1-like rRNA process 99.9 1.4E-24 2.9E-29 191.0 15.3 263 155-452 83-346 (433)
119 KOG2048 WD40 repeat protein [G 99.9 2.8E-22 6E-27 190.0 31.2 286 187-494 25-318 (691)
120 KOG1539 WD repeat protein [Gen 99.9 1.2E-21 2.7E-26 189.6 34.6 300 179-493 194-646 (910)
121 KOG0269 WD40 repeat-containing 99.9 5.7E-24 1.2E-28 204.0 18.5 287 179-491 34-336 (839)
122 KOG1332 Vesicle coat complex C 99.9 1.6E-23 3.6E-28 174.8 18.6 260 226-495 6-286 (299)
123 KOG0639 Transducin-like enhanc 99.9 3.1E-23 6.6E-28 189.6 20.9 280 184-494 416-703 (705)
124 KOG0646 WD40 repeat protein [G 99.9 3.5E-23 7.5E-28 188.0 21.1 207 187-400 81-309 (476)
125 KOG0308 Conserved WD40 repeat- 99.9 1.6E-23 3.5E-28 197.2 18.6 317 153-495 39-393 (735)
126 KOG0772 Uncharacterized conser 99.9 5.7E-23 1.2E-27 188.5 20.3 261 221-495 157-445 (641)
127 KOG4227 WD40 repeat protein [G 99.9 2.7E-22 5.9E-27 178.2 23.0 301 182-494 51-386 (609)
128 KOG2106 Uncharacterized conser 99.9 2.6E-21 5.6E-26 177.3 29.4 279 180-494 238-520 (626)
129 KOG0269 WD40 repeat-containing 99.9 1.2E-23 2.5E-28 201.9 14.4 244 189-452 89-341 (839)
130 KOG0305 Anaphase promoting com 99.9 1.5E-22 3.2E-27 192.0 20.9 202 183-399 255-462 (484)
131 KOG1274 WD40 repeat protein [G 99.9 1.1E-21 2.3E-26 192.1 26.0 247 228-496 10-263 (933)
132 KOG0264 Nucleosome remodeling 99.9 1.5E-22 3.2E-27 183.6 18.4 213 181-398 171-404 (422)
133 KOG0300 WD40 repeat-containing 99.9 3.2E-22 6.8E-27 173.1 19.1 276 150-453 159-478 (481)
134 KOG0270 WD40 repeat-containing 99.9 2.8E-22 6.1E-27 181.0 19.3 246 191-454 177-452 (463)
135 KOG0294 WD40 repeat-containing 99.9 1.3E-21 2.8E-26 169.4 22.3 207 181-402 77-285 (362)
136 KOG1538 Uncharacterized conser 99.9 5.3E-22 1.2E-26 187.3 21.2 280 189-495 14-293 (1081)
137 KOG0639 Transducin-like enhanc 99.9 8.2E-23 1.8E-27 186.9 15.3 236 188-450 466-703 (705)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.6E-20 7.8E-25 174.8 33.8 268 183-475 27-300 (300)
139 KOG1063 RNA polymerase II elon 99.9 2.1E-21 4.5E-26 184.4 24.2 307 179-496 183-603 (764)
140 KOG0302 Ribosome Assembly prot 99.9 1.4E-21 3E-26 173.0 20.8 214 179-400 143-380 (440)
141 KOG1009 Chromatin assembly com 99.9 4.8E-21 1E-25 171.3 24.4 301 187-496 13-373 (434)
142 KOG0267 Microtubule severing p 99.9 3.4E-23 7.5E-28 197.2 10.2 202 182-398 23-226 (825)
143 KOG1063 RNA polymerase II elon 99.9 4.4E-21 9.6E-26 182.2 24.2 303 180-494 47-390 (764)
144 KOG2048 WD40 repeat protein [G 99.9 2.4E-20 5.1E-25 177.0 29.0 250 230-497 24-277 (691)
145 KOG0301 Phospholipase A2-activ 99.9 1.9E-21 4.1E-26 184.7 21.7 240 221-495 4-249 (745)
146 KOG0321 WD40 repeat-containing 99.9 2E-21 4.3E-26 182.9 20.6 274 183-476 96-428 (720)
147 KOG0650 WD40 repeat nucleolar 99.9 6.5E-21 1.4E-25 178.1 23.3 247 222-493 391-678 (733)
148 KOG4283 Transcription-coupled 99.9 2.9E-21 6.3E-26 165.6 18.4 217 228-497 40-278 (397)
149 KOG1188 WD40 repeat protein [G 99.9 8.5E-21 1.8E-25 166.1 19.0 280 201-495 41-346 (376)
150 KOG4378 Nuclear protein COP1 [ 99.9 1.2E-20 2.6E-25 172.6 19.8 262 189-477 36-305 (673)
151 KOG2096 WD40 repeat protein [G 99.9 1E-20 2.3E-25 164.0 18.3 218 225-495 80-308 (420)
152 KOG0322 G-protein beta subunit 99.9 2.1E-20 4.5E-25 158.1 17.0 292 183-494 10-322 (323)
153 KOG1445 Tumor-specific antigen 99.9 1.4E-19 3E-24 170.3 23.8 149 333-496 600-751 (1012)
154 KOG0270 WD40 repeat-containing 99.9 2.1E-20 4.5E-25 169.1 17.4 207 183-400 239-451 (463)
155 KOG2919 Guanine nucleotide-bin 99.9 1.9E-19 4.2E-24 156.5 22.5 274 190-486 52-361 (406)
156 KOG0267 Microtubule severing p 99.8 1.5E-21 3.2E-26 186.2 8.2 193 183-390 66-260 (825)
157 KOG1334 WD40 repeat protein [G 99.8 3E-20 6.5E-25 169.8 15.1 304 178-494 133-465 (559)
158 KOG1273 WD40 repeat protein [G 99.8 6.8E-19 1.5E-23 152.6 21.5 246 234-498 26-283 (405)
159 KOG2055 WD40 repeat protein [G 99.8 6.6E-19 1.4E-23 160.1 21.8 287 144-451 218-512 (514)
160 KOG0307 Vesicle coat complex C 99.8 3.2E-20 7E-25 186.2 14.3 246 188-454 65-330 (1049)
161 PRK11028 6-phosphogluconolacto 99.8 4.5E-17 9.7E-22 155.6 34.6 280 203-495 5-304 (330)
162 KOG1240 Protein kinase contain 99.8 2.7E-18 5.9E-23 173.0 25.7 300 181-493 1042-1431(1431)
163 KOG1963 WD40 repeat protein [G 99.8 1.7E-17 3.7E-22 162.6 30.5 306 182-496 200-539 (792)
164 KOG1310 WD40 repeat protein [G 99.8 1.2E-18 2.7E-23 161.4 21.4 219 177-399 40-304 (758)
165 KOG4378 Nuclear protein COP1 [ 99.8 8.9E-19 1.9E-23 160.5 19.4 261 209-496 11-281 (673)
166 KOG1007 WD repeat protein TSSC 99.8 1.6E-18 3.6E-23 148.5 19.7 278 180-495 56-361 (370)
167 KOG1034 Transcriptional repres 99.8 3.7E-19 8E-24 155.1 15.6 255 186-451 88-383 (385)
168 KOG1517 Guanine nucleotide bin 99.8 3.7E-18 7.9E-23 169.5 24.4 290 188-497 1065-1383(1387)
169 KOG0302 Ribosome Assembly prot 99.8 7.5E-19 1.6E-23 155.8 17.6 165 181-346 205-380 (440)
170 KOG0303 Actin-binding protein 99.8 1.2E-18 2.7E-23 155.3 18.5 208 182-400 76-296 (472)
171 KOG0307 Vesicle coat complex C 99.8 1.2E-19 2.6E-24 182.2 13.3 285 191-497 10-329 (1049)
172 KOG0642 Cell-cycle nuclear pro 99.8 6.1E-19 1.3E-23 164.3 15.8 252 182-495 289-561 (577)
173 KOG4328 WD40 protein [Function 99.8 6.7E-18 1.5E-22 153.5 20.8 260 221-497 176-452 (498)
174 COG2319 FOG: WD40 repeat [Gene 99.8 6E-16 1.3E-20 152.9 36.4 289 180-496 148-443 (466)
175 KOG2919 Guanine nucleotide-bin 99.8 2.1E-17 4.5E-22 144.0 22.0 246 234-496 52-328 (406)
176 KOG1009 Chromatin assembly com 99.8 2.6E-17 5.6E-22 147.6 22.2 283 153-454 28-375 (434)
177 KOG2445 Nuclear pore complex c 99.8 4.6E-17 1E-21 141.0 22.9 219 228-496 10-257 (361)
178 COG2319 FOG: WD40 repeat [Gene 99.8 1.8E-15 3.9E-20 149.5 38.0 290 182-497 60-361 (466)
179 KOG1587 Cytoplasmic dynein int 99.8 5.5E-17 1.2E-21 158.7 26.3 273 209-496 221-517 (555)
180 KOG0644 Uncharacterized conser 99.8 2.2E-19 4.7E-24 174.0 8.3 282 178-496 181-469 (1113)
181 KOG0649 WD40 repeat protein [G 99.8 2.9E-16 6.3E-21 131.6 25.6 275 189-493 12-314 (325)
182 KOG0290 Conserved WD40 repeat- 99.8 1.1E-16 2.4E-21 137.5 20.8 244 189-496 46-319 (364)
183 KOG4227 WD40 repeat protein [G 99.8 4.7E-17 1E-21 145.1 18.6 256 224-496 49-323 (609)
184 KOG1523 Actin-related protein 99.8 4.5E-16 9.8E-21 135.7 24.0 207 187-400 10-238 (361)
185 PRK11028 6-phosphogluconolacto 99.8 2.5E-15 5.3E-20 143.6 31.2 273 187-473 34-327 (330)
186 KOG0303 Actin-binding protein 99.8 1.8E-16 3.8E-21 141.8 21.1 256 199-476 43-320 (472)
187 KOG1188 WD40 repeat protein [G 99.7 5E-17 1.1E-21 142.7 16.2 264 181-451 64-346 (376)
188 KOG1587 Cytoplasmic dynein int 99.7 2.7E-16 5.9E-21 153.9 23.0 247 186-452 241-517 (555)
189 KOG1538 Uncharacterized conser 99.7 7.5E-17 1.6E-21 152.9 18.2 238 180-451 46-293 (1081)
190 KOG0642 Cell-cycle nuclear pro 99.7 6E-17 1.3E-21 151.1 16.3 240 145-398 300-561 (577)
191 PRK01742 tolB translocation pr 99.7 4.7E-16 1E-20 153.2 22.3 238 209-476 183-426 (429)
192 KOG2110 Uncharacterized conser 99.7 2.9E-14 6.3E-19 126.9 30.1 280 187-496 5-331 (391)
193 KOG1445 Tumor-specific antigen 99.7 1.8E-16 3.8E-21 149.6 16.3 235 199-453 590-846 (1012)
194 KOG0771 Prolactin regulatory e 99.7 1.5E-16 3.3E-21 143.7 14.7 195 191-399 148-355 (398)
195 KOG0290 Conserved WD40 repeat- 99.7 1.2E-15 2.6E-20 131.3 18.2 240 185-442 94-357 (364)
196 KOG0644 Uncharacterized conser 99.7 2.4E-17 5.2E-22 160.0 8.6 244 223-497 182-428 (1113)
197 KOG1007 WD repeat protein TSSC 99.7 2.4E-15 5.2E-20 129.3 17.8 211 181-398 116-361 (370)
198 KOG1517 Guanine nucleotide bin 99.7 4.7E-15 1E-19 147.8 20.0 254 187-453 1109-1383(1387)
199 KOG1240 Protein kinase contain 99.7 1.7E-14 3.7E-19 146.1 24.1 263 215-497 1034-1336(1431)
200 KOG0771 Prolactin regulatory e 99.7 2.4E-14 5.3E-19 129.6 22.0 200 276-495 148-354 (398)
201 KOG0649 WD40 repeat protein [G 99.7 1.5E-13 3.3E-18 115.5 23.9 194 183-398 58-274 (325)
202 PF02239 Cytochrom_D1: Cytochr 99.6 8E-13 1.7E-17 126.2 32.3 283 200-496 5-348 (369)
203 KOG1963 WD40 repeat protein [G 99.6 2E-13 4.2E-18 134.5 27.8 282 192-495 21-322 (792)
204 KOG1524 WD40 repeat-containing 99.6 7.9E-15 1.7E-19 136.1 16.1 210 199-449 74-284 (737)
205 KOG1272 WD40-repeat-containing 99.6 1.8E-15 3.8E-20 138.2 10.9 267 189-487 131-401 (545)
206 KOG2139 WD40 repeat protein [G 99.6 4.7E-13 1E-17 118.9 25.3 256 187-451 140-431 (445)
207 PRK03629 tolB translocation pr 99.6 2.5E-13 5.4E-18 133.6 26.2 237 210-475 179-427 (429)
208 KOG4497 Uncharacterized conser 99.6 1.8E-13 3.8E-18 120.0 21.7 294 192-496 13-392 (447)
209 KOG1523 Actin-related protein 99.6 2.3E-13 5.1E-18 118.9 21.2 244 227-486 6-269 (361)
210 KOG1310 WD40 repeat protein [G 99.6 1.4E-14 3.1E-19 134.9 14.0 230 223-455 42-307 (758)
211 KOG2111 Uncharacterized conser 99.6 1.1E-11 2.3E-16 108.7 30.6 278 190-493 8-320 (346)
212 KOG2110 Uncharacterized conser 99.6 1.1E-12 2.3E-17 117.1 24.7 155 187-347 87-251 (391)
213 KOG1334 WD40 repeat protein [G 99.6 3.5E-14 7.6E-19 130.6 14.8 265 222-497 133-426 (559)
214 KOG3881 Uncharacterized conser 99.6 6.3E-13 1.4E-17 119.3 22.0 252 187-496 55-321 (412)
215 KOG2321 WD40 repeat protein [G 99.6 1E-12 2.2E-17 123.4 24.0 286 186-495 50-343 (703)
216 KOG2394 WD40 protein DMR-N9 [G 99.6 2.6E-13 5.7E-18 126.3 19.9 238 190-474 126-383 (636)
217 KOG1524 WD40 repeat-containing 99.6 1.2E-13 2.6E-18 128.4 17.2 261 184-491 11-282 (737)
218 PRK04922 tolB translocation pr 99.6 9.2E-13 2E-17 130.2 24.2 235 210-475 184-432 (433)
219 KOG2139 WD40 repeat protein [G 99.6 7.5E-13 1.6E-17 117.6 20.7 194 188-398 99-309 (445)
220 KOG2111 Uncharacterized conser 99.6 2.4E-12 5.1E-17 112.7 23.2 238 233-496 7-257 (346)
221 PRK01742 tolB translocation pr 99.6 7.3E-13 1.6E-17 130.7 22.4 213 252-494 183-400 (429)
222 PF10282 Lactonase: Lactonase, 99.5 1.5E-10 3.2E-15 110.8 37.2 281 203-495 2-322 (345)
223 KOG4497 Uncharacterized conser 99.5 8.2E-12 1.8E-16 109.7 25.3 285 187-488 48-425 (447)
224 PRK02889 tolB translocation pr 99.5 2.1E-12 4.6E-17 127.2 24.7 237 210-476 176-425 (427)
225 PRK05137 tolB translocation pr 99.5 4.6E-12 1E-16 125.4 27.1 235 210-476 182-433 (435)
226 KOG2394 WD40 protein DMR-N9 [G 99.5 2.7E-13 5.9E-18 126.2 15.9 137 187-324 219-384 (636)
227 KOG1354 Serine/threonine prote 99.5 8.1E-13 1.8E-17 116.6 17.7 291 187-498 25-362 (433)
228 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.5E-10 5.5E-15 106.6 34.1 273 210-497 27-332 (352)
229 PF08662 eIF2A: Eukaryotic tra 99.5 3.7E-12 8E-17 110.5 19.7 149 191-344 9-179 (194)
230 KOG1272 WD40-repeat-containing 99.5 9.8E-14 2.1E-18 126.9 10.2 230 233-493 131-360 (545)
231 KOG0322 G-protein beta subunit 99.5 3.2E-13 6.8E-18 115.0 11.3 156 187-343 150-322 (323)
232 TIGR02800 propeller_TolB tol-p 99.5 2.3E-11 5E-16 120.4 24.8 233 210-473 170-416 (417)
233 KOG1409 Uncharacterized conser 99.5 1.1E-11 2.3E-16 109.7 19.4 247 182-452 19-271 (404)
234 PRK05137 tolB translocation pr 99.4 4.4E-11 9.5E-16 118.5 25.1 201 182-399 196-413 (435)
235 PF02239 Cytochrom_D1: Cytochr 99.4 4.8E-10 1E-14 107.2 31.1 257 191-462 40-356 (369)
236 KOG3881 Uncharacterized conser 99.4 3.6E-11 7.8E-16 108.2 20.8 199 186-399 104-321 (412)
237 PF10282 Lactonase: Lactonase, 99.4 4.6E-09 1E-13 100.6 36.2 273 187-473 36-345 (345)
238 PRK03629 tolB translocation pr 99.4 8.2E-11 1.8E-15 115.9 24.7 199 183-398 194-406 (429)
239 KOG2041 WD40 repeat protein [G 99.4 1.5E-11 3.2E-16 118.5 18.4 289 188-494 15-336 (1189)
240 PRK04922 tolB translocation pr 99.4 6.9E-11 1.5E-15 116.9 23.5 199 182-398 198-411 (433)
241 KOG2315 Predicted translation 99.4 1.9E-10 4.2E-15 108.3 24.6 278 189-496 36-391 (566)
242 PRK02889 tolB translocation pr 99.4 2E-10 4.4E-15 113.2 25.3 210 253-487 176-392 (427)
243 PRK04792 tolB translocation pr 99.4 3.4E-10 7.3E-15 112.0 26.0 234 211-475 199-446 (448)
244 KOG0974 WD-repeat protein WDR6 99.4 1.4E-10 3E-15 116.7 22.8 118 182-304 170-289 (967)
245 PRK00178 tolB translocation pr 99.4 6.1E-10 1.3E-14 110.5 27.2 235 211-476 180-428 (430)
246 KOG2321 WD40 repeat protein [G 99.3 2E-10 4.4E-15 108.2 21.2 253 229-498 49-305 (703)
247 COG2706 3-carboxymuconate cycl 99.3 1.8E-08 3.9E-13 90.7 32.2 275 209-497 15-323 (346)
248 KOG0974 WD-repeat protein WDR6 99.3 1E-10 2.2E-15 117.6 19.4 271 187-496 7-289 (967)
249 PF08662 eIF2A: Eukaryotic tra 99.3 1.5E-10 3.3E-15 100.5 16.8 118 187-311 59-186 (194)
250 COG5354 Uncharacterized protei 99.3 4E-09 8.7E-14 98.4 26.8 281 181-496 26-396 (561)
251 TIGR03300 assembly_YfgL outer 99.3 5.8E-09 1.3E-13 101.7 29.9 270 199-497 64-340 (377)
252 TIGR02800 propeller_TolB tol-p 99.3 7.5E-10 1.6E-14 109.7 23.4 191 183-390 185-386 (417)
253 KOG4190 Uncharacterized conser 99.3 2.6E-11 5.7E-16 113.6 11.4 282 181-491 729-1032(1034)
254 KOG0309 Conserved WD40 repeat- 99.3 3.8E-11 8.3E-16 116.1 12.2 288 187-496 24-340 (1081)
255 PLN02919 haloacid dehalogenase 99.3 1.6E-08 3.4E-13 109.4 33.0 253 191-497 571-890 (1057)
256 KOG0280 Uncharacterized conser 99.2 2E-09 4.4E-14 93.6 20.3 266 209-495 45-333 (339)
257 COG2706 3-carboxymuconate cycl 99.2 9.9E-08 2.1E-12 86.0 31.1 278 186-474 38-345 (346)
258 KOG0280 Uncharacterized conser 99.2 6.4E-10 1.4E-14 96.6 15.0 197 190-395 124-330 (339)
259 PRK00178 tolB translocation pr 99.2 6.3E-09 1.4E-13 103.3 24.2 199 183-398 194-406 (430)
260 TIGR03300 assembly_YfgL outer 99.2 1.6E-08 3.4E-13 98.6 26.1 256 199-492 104-376 (377)
261 KOG1409 Uncharacterized conser 99.2 2.1E-09 4.7E-14 95.4 17.7 198 187-399 68-271 (404)
262 KOG2314 Translation initiation 99.2 2.3E-08 5E-13 94.3 25.3 289 190-496 213-574 (698)
263 COG4946 Uncharacterized protei 99.2 3.5E-08 7.6E-13 91.4 25.8 274 183-496 355-655 (668)
264 KOG4547 WD40 repeat-containing 99.2 2.7E-09 5.9E-14 101.4 18.9 189 283-496 3-221 (541)
265 PRK01029 tolB translocation pr 99.2 4.7E-08 1E-12 96.1 27.9 240 210-477 165-426 (428)
266 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.5E-07 3.1E-12 88.2 29.6 243 195-461 53-338 (352)
267 PRK01029 tolB translocation pr 99.2 4E-08 8.8E-13 96.5 27.1 224 253-497 165-405 (428)
268 KOG1354 Serine/threonine prote 99.1 4.1E-09 8.9E-14 93.6 17.2 282 187-492 84-431 (433)
269 PRK04792 tolB translocation pr 99.1 1.4E-08 3E-13 100.6 23.2 199 183-398 213-425 (448)
270 KOG1064 RAVE (regulator of V-A 99.1 1.1E-09 2.4E-14 115.9 14.0 189 183-399 2204-2399(2439)
271 KOG4547 WD40 repeat-containing 99.1 6.4E-08 1.4E-12 92.2 24.6 190 199-399 4-221 (541)
272 KOG0309 Conserved WD40 repeat- 99.1 1.8E-09 4E-14 104.8 14.2 221 180-400 107-341 (1081)
273 COG5170 CDC55 Serine/threonine 99.1 1.4E-09 3.1E-14 95.2 11.6 294 187-494 26-366 (460)
274 KOG4532 WD40-like repeat conta 99.1 7E-08 1.5E-12 83.1 21.1 263 210-495 52-331 (344)
275 KOG1912 WD40 repeat protein [G 99.1 4.4E-08 9.4E-13 96.0 21.8 207 182-399 50-305 (1062)
276 KOG2041 WD40 repeat protein [G 99.1 2.6E-09 5.6E-14 103.4 13.3 240 230-486 13-279 (1189)
277 PF04762 IKI3: IKI3 family; I 99.0 9E-07 2E-11 94.3 33.4 286 187-495 75-456 (928)
278 KOG1064 RAVE (regulator of V-A 99.0 3.7E-09 8.1E-14 112.0 12.7 216 243-497 2180-2400(2439)
279 KOG0882 Cyclophilin-related pe 98.9 8.7E-09 1.9E-13 94.7 11.8 260 186-453 8-307 (558)
280 PRK04043 tolB translocation pr 98.9 1E-06 2.2E-11 86.1 27.1 212 210-452 169-401 (419)
281 KOG4714 Nucleoporin [Nuclear s 98.9 6.8E-09 1.5E-13 88.8 10.3 211 185-396 87-316 (319)
282 KOG1912 WD40 repeat protein [G 98.9 5.3E-08 1.1E-12 95.5 17.6 250 190-452 18-305 (1062)
283 PF04762 IKI3: IKI3 family; I 98.9 8.3E-06 1.8E-10 87.1 35.4 153 191-347 260-459 (928)
284 KOG2315 Predicted translation 98.9 2.2E-07 4.7E-12 88.1 20.6 230 191-452 129-391 (566)
285 PF15492 Nbas_N: Neuroblastoma 98.9 5.3E-06 1.1E-10 72.9 27.0 139 193-334 3-167 (282)
286 KOG4714 Nucleoporin [Nuclear s 98.9 7.1E-08 1.5E-12 82.7 15.0 196 190-398 39-254 (319)
287 PF13360 PQQ_2: PQQ-like domai 98.9 1.5E-06 3.2E-11 78.9 24.1 222 209-454 2-233 (238)
288 PRK11138 outer membrane biogen 98.9 1.9E-06 4E-11 84.5 26.4 256 200-494 120-393 (394)
289 PRK11138 outer membrane biogen 98.9 4.3E-06 9.3E-11 82.0 28.8 270 200-497 69-355 (394)
290 KOG1645 RING-finger-containing 98.9 1E-06 2.2E-11 80.4 21.5 265 212-496 175-462 (463)
291 PLN02919 haloacid dehalogenase 98.8 1.7E-06 3.6E-11 94.1 26.5 203 189-400 625-890 (1057)
292 KOG4532 WD40-like repeat conta 98.8 1.6E-06 3.4E-11 75.0 20.6 196 199-402 83-286 (344)
293 KOG2695 WD40 repeat protein [G 98.8 9.7E-09 2.1E-13 91.3 7.5 180 279-474 218-401 (425)
294 PF08450 SGL: SMP-30/Gluconola 98.8 3.4E-05 7.4E-10 70.3 31.2 223 236-483 4-243 (246)
295 KOG3914 WD repeat protein WDR4 98.8 2.1E-07 4.6E-12 84.8 15.6 156 235-402 66-227 (390)
296 KOG2695 WD40 repeat protein [G 98.8 2.4E-08 5.1E-13 88.9 8.2 154 237-400 217-378 (425)
297 PF13360 PQQ_2: PQQ-like domai 98.8 3.1E-06 6.7E-11 76.8 22.6 225 252-497 2-232 (238)
298 PF08450 SGL: SMP-30/Gluconola 98.8 6E-05 1.3E-09 68.6 31.0 194 192-398 4-213 (246)
299 PF00400 WD40: WD domain, G-be 98.8 2.7E-08 5.9E-13 61.5 6.0 38 456-493 2-39 (39)
300 KOG2066 Vacuolar assembly/sort 98.8 3.9E-07 8.5E-12 90.1 16.9 191 231-452 39-234 (846)
301 PF00400 WD40: WD domain, G-be 98.8 3.6E-08 7.9E-13 61.0 6.3 38 222-259 2-39 (39)
302 KOG2314 Translation initiation 98.7 8E-06 1.7E-10 77.6 23.5 107 234-344 213-334 (698)
303 PRK04043 tolB translocation pr 98.7 6.4E-06 1.4E-10 80.6 24.2 182 189-389 189-388 (419)
304 KOG4190 Uncharacterized conser 98.7 4.4E-08 9.5E-13 92.4 7.9 209 223-453 727-950 (1034)
305 KOG4649 PQQ (pyrrolo-quinoline 98.7 0.0001 2.2E-09 63.9 27.1 141 197-341 20-162 (354)
306 KOG2066 Vacuolar assembly/sort 98.7 9.5E-07 2E-11 87.5 16.0 188 187-398 39-233 (846)
307 KOG1275 PAB-dependent poly(A) 98.6 4.1E-07 8.9E-12 91.0 13.4 148 189-342 179-340 (1118)
308 COG4946 Uncharacterized protei 98.6 4.7E-05 1E-09 71.3 24.9 147 195-346 327-479 (668)
309 PF07433 DUF1513: Protein of u 98.6 0.00011 2.4E-09 66.7 26.6 236 191-485 8-276 (305)
310 KOG3914 WD repeat protein WDR4 98.6 8.3E-07 1.8E-11 81.0 12.4 156 189-348 64-227 (390)
311 COG5354 Uncharacterized protei 98.6 2.2E-05 4.8E-10 74.1 21.7 251 215-495 17-306 (561)
312 KOG1920 IkappaB kinase complex 98.6 4.1E-05 8.9E-10 79.7 25.5 276 188-493 69-363 (1265)
313 KOG1832 HIV-1 Vpr-binding prot 98.5 1.1E-07 2.4E-12 94.5 6.0 191 180-399 1094-1292(1516)
314 KOG3617 WD40 and TPR repeat-co 98.5 1.1E-06 2.4E-11 87.3 12.4 147 190-345 62-221 (1416)
315 COG5170 CDC55 Serine/threonine 98.5 8.8E-07 1.9E-11 78.0 9.8 240 230-496 25-310 (460)
316 PF15492 Nbas_N: Neuroblastoma 98.5 3E-05 6.6E-10 68.2 18.9 98 191-292 47-166 (282)
317 cd00216 PQQ_DH Dehydrogenases 98.4 0.00033 7.2E-09 70.4 28.1 269 200-498 61-427 (488)
318 KOG1275 PAB-dependent poly(A) 98.4 9.9E-06 2.1E-10 81.5 15.2 184 199-396 146-340 (1118)
319 KOG2114 Vacuolar assembly/sort 98.4 0.00014 3E-09 73.2 22.9 193 189-399 27-244 (933)
320 PF14583 Pectate_lyase22: Olig 98.3 0.0018 3.8E-08 61.0 28.1 276 194-494 42-380 (386)
321 PF06433 Me-amine-dh_H: Methyl 98.3 0.0009 2E-08 61.7 25.6 273 210-498 17-323 (342)
322 KOG1920 IkappaB kinase complex 98.3 0.00023 5E-09 74.3 24.0 205 273-495 69-322 (1265)
323 KOG0882 Cyclophilin-related pe 98.3 9.7E-06 2.1E-10 75.2 12.3 250 230-497 8-307 (558)
324 PF00780 CNH: CNH domain; Int 98.3 0.0017 3.6E-08 60.3 27.1 233 199-463 6-265 (275)
325 KOG1832 HIV-1 Vpr-binding prot 98.2 9.8E-07 2.1E-11 88.1 4.6 224 221-481 1091-1317(1516)
326 PF08596 Lgl_C: Lethal giant l 98.2 0.00054 1.2E-08 66.1 22.6 243 233-486 3-327 (395)
327 KOG1645 RING-finger-containing 98.2 0.00017 3.7E-09 66.3 17.9 148 182-333 188-349 (463)
328 PF11768 DUF3312: Protein of u 98.2 0.00016 3.4E-09 70.2 18.2 114 232-347 206-332 (545)
329 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0014 3.1E-08 57.0 20.7 74 199-273 62-135 (354)
330 PF11768 DUF3312: Protein of u 98.1 0.00073 1.6E-08 65.7 21.0 121 266-400 199-331 (545)
331 PF06433 Me-amine-dh_H: Methyl 98.1 0.0037 8E-08 57.7 24.5 154 192-350 40-219 (342)
332 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0019 4.2E-08 62.2 24.0 254 209-483 22-345 (353)
333 PRK02888 nitrous-oxide reducta 98.1 0.00097 2.1E-08 66.5 21.6 246 199-496 140-405 (635)
334 KOG1008 Uncharacterized conser 98.1 1.8E-06 3.9E-11 83.4 2.2 204 188-399 57-276 (783)
335 KOG2114 Vacuolar assembly/sort 98.1 0.00049 1.1E-08 69.4 18.9 202 279-496 30-244 (933)
336 PF07433 DUF1513: Protein of u 98.0 0.0043 9.3E-08 56.6 22.9 150 193-346 56-249 (305)
337 PRK02888 nitrous-oxide reducta 98.0 0.00062 1.3E-08 67.8 19.0 136 208-345 213-405 (635)
338 PF06977 SdiA-regulated: SdiA- 98.0 0.0055 1.2E-07 55.0 23.5 208 273-492 22-247 (248)
339 cd00216 PQQ_DH Dehydrogenases 98.0 0.0068 1.5E-07 61.1 26.3 145 201-349 111-324 (488)
340 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0011 2.3E-08 50.4 15.3 100 234-339 2-109 (111)
341 PF03178 CPSF_A: CPSF A subuni 98.0 0.013 2.9E-07 55.6 26.9 214 254-491 3-261 (321)
342 PF03178 CPSF_A: CPSF A subuni 97.9 0.01 2.3E-07 56.3 25.4 221 211-448 3-262 (321)
343 PF04053 Coatomer_WDAD: Coatom 97.9 0.0056 1.2E-07 60.1 23.7 142 187-344 32-173 (443)
344 KOG3621 WD40 repeat-containing 97.9 0.0064 1.4E-07 60.4 23.6 142 193-338 39-192 (726)
345 PF08553 VID27: VID27 cytoplas 97.9 0.0016 3.5E-08 67.3 19.8 132 207-343 501-646 (794)
346 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0033 7.2E-08 47.8 15.5 102 190-298 2-109 (111)
347 KOG3621 WD40 repeat-containing 97.8 0.00054 1.2E-08 67.7 13.9 115 230-345 32-155 (726)
348 KOG1008 Uncharacterized conser 97.8 1.1E-05 2.5E-10 78.1 2.0 204 231-452 56-276 (783)
349 PF08145 BOP1NT: BOP1NT (NUC16 97.7 2.2E-05 4.8E-10 68.7 2.8 150 9-186 71-225 (260)
350 PF08553 VID27: VID27 cytoplas 97.7 0.0064 1.4E-07 63.1 20.8 142 243-398 493-647 (794)
351 KOG3617 WD40 and TPR repeat-co 97.7 0.00023 5.1E-09 71.4 9.8 110 235-346 19-133 (1416)
352 PF00780 CNH: CNH domain; Int 97.7 0.04 8.6E-07 51.0 24.1 229 242-497 6-257 (275)
353 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.09 2E-06 53.4 29.3 106 200-311 69-197 (527)
354 COG0823 TolB Periplasmic compo 97.7 0.0046 1E-07 60.4 18.2 163 222-398 183-358 (425)
355 KOG4640 Anaphase-promoting com 97.6 0.00026 5.7E-09 68.9 9.3 92 188-282 21-115 (665)
356 COG3391 Uncharacterized conser 97.6 0.023 5.1E-07 55.2 23.0 197 190-400 76-285 (381)
357 PF04053 Coatomer_WDAD: Coatom 97.6 0.036 7.7E-07 54.5 24.1 230 225-495 26-262 (443)
358 smart00320 WD40 WD40 repeats. 97.6 0.00017 3.7E-09 43.3 5.3 37 457-493 4-40 (40)
359 PF08596 Lgl_C: Lethal giant l 97.6 0.051 1.1E-06 52.7 23.9 178 314-496 86-291 (395)
360 PF02897 Peptidase_S9_N: Proly 97.6 0.099 2.1E-06 51.7 29.9 154 190-347 126-312 (414)
361 smart00320 WD40 WD40 repeats. 97.6 0.00024 5.2E-09 42.6 5.5 38 222-259 3-40 (40)
362 COG3391 Uncharacterized conser 97.5 0.11 2.3E-06 50.7 29.4 245 190-454 33-286 (381)
363 PHA02713 hypothetical protein; 97.5 0.017 3.6E-07 59.2 20.8 216 254-497 273-535 (557)
364 PF14727 PHTB1_N: PTHB1 N-term 97.5 0.12 2.6E-06 50.2 31.0 147 197-344 34-204 (418)
365 COG0823 TolB Periplasmic compo 97.3 0.0026 5.6E-08 62.1 11.8 143 190-333 240-388 (425)
366 KOG4441 Proteins containing BT 97.3 0.041 8.8E-07 56.3 20.4 235 199-458 284-553 (571)
367 KOG4441 Proteins containing BT 97.3 0.02 4.3E-07 58.6 18.0 227 242-496 284-547 (571)
368 COG3204 Uncharacterized protei 97.3 0.13 2.8E-06 46.3 21.5 171 227-400 81-265 (316)
369 KOG4640 Anaphase-promoting com 97.3 0.0016 3.5E-08 63.6 9.3 92 231-324 20-115 (665)
370 KOG1897 Damage-specific DNA bi 97.2 0.4 8.6E-06 50.2 29.9 285 187-493 530-896 (1096)
371 KOG2395 Protein involved in va 97.1 0.042 9.2E-07 53.1 17.0 145 286-493 347-498 (644)
372 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.13 2.8E-06 49.5 21.2 92 240-333 1-119 (353)
373 PF04841 Vps16_N: Vps16, N-ter 97.1 0.32 7E-06 47.7 28.3 200 255-478 63-272 (410)
374 PF02897 Peptidase_S9_N: Proly 97.1 0.35 7.6E-06 47.8 27.8 112 234-345 126-261 (414)
375 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.1 0.42 9.1E-06 48.6 28.0 144 201-347 121-336 (527)
376 PF05694 SBP56: 56kDa selenium 97.1 0.31 6.7E-06 46.8 22.3 204 199-408 86-352 (461)
377 PHA02713 hypothetical protein; 97.1 0.09 2E-06 53.9 20.3 191 242-458 303-540 (557)
378 KOG2395 Protein involved in va 97.1 0.14 3.1E-06 49.6 19.8 138 202-345 348-501 (644)
379 PRK13616 lipoprotein LpqB; Pro 97.0 0.082 1.8E-06 54.2 19.4 149 188-344 350-527 (591)
380 KOG2444 WD40 repeat protein [G 97.0 0.0014 3E-08 56.2 5.2 108 378-496 68-178 (238)
381 PF05096 Glu_cyclase_2: Glutam 97.0 0.13 2.9E-06 46.1 17.7 110 232-345 45-158 (264)
382 PF04841 Vps16_N: Vps16, N-ter 97.0 0.44 9.6E-06 46.8 28.4 165 211-398 62-246 (410)
383 PF06977 SdiA-regulated: SdiA- 96.9 0.3 6.5E-06 44.0 27.0 161 182-345 16-202 (248)
384 PRK13616 lipoprotein LpqB; Pro 96.9 0.14 2.9E-06 52.6 19.7 160 230-398 348-525 (591)
385 COG3386 Gluconolactonase [Carb 96.9 0.38 8.3E-06 44.9 22.3 193 194-398 31-243 (307)
386 KOG2079 Vacuolar assembly/sort 96.9 0.0057 1.2E-07 63.6 9.7 108 189-302 91-202 (1206)
387 TIGR03074 PQQ_membr_DH membran 96.8 0.49 1.1E-05 50.1 22.9 112 200-312 194-353 (764)
388 PF15390 DUF4613: Domain of un 96.6 0.86 1.9E-05 45.2 26.6 145 188-343 20-185 (671)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 0.32 6.8E-06 47.2 18.3 105 236-342 6-144 (415)
390 COG3386 Gluconolactonase [Carb 96.5 0.72 1.6E-05 43.1 23.7 222 238-486 31-277 (307)
391 COG3490 Uncharacterized protei 96.5 0.59 1.3E-05 41.9 18.9 136 191-332 71-243 (366)
392 PF14727 PHTB1_N: PTHB1 N-term 96.5 0.29 6.2E-06 47.6 17.8 162 326-494 37-203 (418)
393 KOG2444 WD40 repeat protein [G 96.5 0.0065 1.4E-07 52.2 5.8 140 203-345 33-178 (238)
394 KOG2079 Vacuolar assembly/sort 96.5 0.14 3E-06 53.9 16.1 97 242-339 98-200 (1206)
395 TIGR03074 PQQ_membr_DH membran 96.3 1.4 3E-05 46.8 23.1 107 243-349 194-349 (764)
396 PHA03098 kelch-like protein; P 96.3 0.29 6.2E-06 50.3 18.0 188 284-497 294-513 (534)
397 PF12894 Apc4_WD40: Anaphase-p 96.3 0.014 3E-07 37.1 5.0 34 231-265 11-44 (47)
398 PF12894 Apc4_WD40: Anaphase-p 96.2 0.019 4.2E-07 36.4 5.4 32 465-496 11-42 (47)
399 PF02333 Phytase: Phytase; In 96.1 1.4 3E-05 42.2 24.1 194 199-399 67-291 (381)
400 PHA03098 kelch-like protein; P 96.0 0.42 9.1E-06 49.0 17.3 201 242-468 294-528 (534)
401 KOG4499 Ca2+-binding protein R 95.9 1 2.2E-05 39.3 17.9 48 432-481 222-270 (310)
402 PF10313 DUF2415: Uncharacteri 95.9 0.043 9.3E-07 33.7 5.6 32 188-219 1-34 (43)
403 COG3490 Uncharacterized protei 95.8 0.84 1.8E-05 41.0 15.5 184 194-397 120-347 (366)
404 PF10168 Nup88: Nuclear pore c 95.7 1.6 3.6E-05 45.8 20.1 85 315-402 85-183 (717)
405 KOG3630 Nuclear pore complex, 95.6 0.17 3.8E-06 53.5 12.2 137 232-372 101-252 (1405)
406 PHA02790 Kelch-like protein; P 95.6 0.78 1.7E-05 46.3 16.8 185 284-497 271-472 (480)
407 PF10168 Nup88: Nuclear pore c 95.5 4.1 8.8E-05 43.0 22.2 71 232-303 85-179 (717)
408 COG3204 Uncharacterized protei 95.5 1.9 4.2E-05 39.1 19.8 174 273-453 86-265 (316)
409 KOG1897 Damage-specific DNA bi 95.3 4.9 0.00011 42.6 28.0 231 232-484 488-733 (1096)
410 PF08728 CRT10: CRT10; InterP 95.2 1.1 2.3E-05 46.4 16.1 114 378-494 112-245 (717)
411 PF10647 Gmad1: Lipoprotein Lp 95.2 2.4 5.3E-05 38.5 17.9 152 233-390 25-187 (253)
412 COG5276 Uncharacterized conser 95.2 2.4 5.2E-05 38.4 25.0 163 226-404 36-205 (370)
413 PLN02153 epithiospecifier prot 95.0 3.5 7.6E-05 39.5 20.6 56 432-487 251-325 (341)
414 COG3823 Glutamine cyclotransfe 95.0 2.1 4.5E-05 36.7 14.8 100 242-343 55-157 (262)
415 PF15390 DUF4613: Domain of un 94.8 0.88 1.9E-05 45.2 13.8 128 361-495 54-186 (671)
416 PF14781 BBS2_N: Ciliary BBSom 94.8 1.4 3.1E-05 34.9 12.5 108 236-344 3-125 (136)
417 PF14761 HPS3_N: Hermansky-Pud 94.5 2.9 6.3E-05 36.3 15.3 103 201-306 29-166 (215)
418 PF12234 Rav1p_C: RAVE protein 94.5 1.4 3E-05 45.2 14.7 104 380-493 41-154 (631)
419 PRK10115 protease 2; Provision 94.4 8 0.00017 41.0 29.6 113 232-345 127-256 (686)
420 COG4590 ABC-type uncharacteriz 94.4 2.3 4.9E-05 40.9 14.8 165 315-497 221-388 (733)
421 PF14870 PSII_BNR: Photosynthe 94.2 4.8 0.0001 37.5 18.6 150 185-341 142-301 (302)
422 TIGR02604 Piru_Ver_Nterm putat 94.0 3 6.6E-05 40.4 16.0 142 189-333 15-202 (367)
423 PF08728 CRT10: CRT10; InterP 94.0 0.83 1.8E-05 47.2 12.2 111 284-398 113-246 (717)
424 TIGR02604 Piru_Ver_Nterm putat 93.9 3.2 6.9E-05 40.2 15.8 41 443-486 164-204 (367)
425 PF02333 Phytase: Phytase; In 93.9 6.3 0.00014 37.8 23.0 204 284-497 67-292 (381)
426 PHA02790 Kelch-like protein; P 93.7 4.2 9E-05 41.1 16.8 139 199-346 271-425 (480)
427 PF14583 Pectate_lyase22: Olig 93.7 6.8 0.00015 37.5 23.9 223 238-486 42-303 (386)
428 PLN02193 nitrile-specifier pro 93.5 9.4 0.0002 38.4 20.9 101 242-346 175-304 (470)
429 COG5276 Uncharacterized conser 93.4 6.1 0.00013 36.0 29.2 276 187-495 86-369 (370)
430 KOG1916 Nuclear protein, conta 93.2 0.17 3.7E-06 52.2 5.8 170 313-494 131-322 (1283)
431 PF14781 BBS2_N: Ciliary BBSom 93.1 3.6 7.8E-05 32.7 13.0 114 193-310 4-132 (136)
432 COG5167 VID27 Protein involved 92.9 6.1 0.00013 38.8 15.1 142 199-347 478-635 (776)
433 KOG2247 WD40 repeat-containing 92.8 0.023 4.9E-07 54.4 -0.9 151 230-394 33-184 (615)
434 PF14655 RAB3GAP2_N: Rab3 GTPa 92.7 1.6 3.6E-05 42.4 11.5 88 225-312 301-407 (415)
435 COG5167 VID27 Protein involved 92.6 4.1 8.9E-05 39.9 13.5 60 432-494 572-631 (776)
436 TIGR03548 mutarot_permut cycli 92.5 9.7 0.00021 36.1 20.6 103 242-346 72-196 (323)
437 TIGR03118 PEPCTERM_chp_1 conse 92.5 8.5 0.00018 35.4 23.1 237 233-475 24-307 (336)
438 PRK13684 Ycf48-like protein; P 92.5 10 0.00022 36.2 16.9 148 187-342 172-329 (334)
439 KOG3630 Nuclear pore complex, 92.2 2.5 5.4E-05 45.4 12.4 155 314-483 100-261 (1405)
440 PF07569 Hira: TUP1-like enhan 92.0 1 2.2E-05 39.9 8.6 60 284-344 21-95 (219)
441 PF10313 DUF2415: Uncharacteri 91.9 0.86 1.9E-05 28.1 5.5 32 232-263 1-35 (43)
442 PF11715 Nup160: Nucleoporin N 91.2 1.3 2.9E-05 45.6 9.8 73 199-271 157-258 (547)
443 KOG1916 Nuclear protein, conta 91.1 0.15 3.3E-06 52.6 2.6 108 199-308 194-328 (1283)
444 TIGR03548 mutarot_permut cycli 91.1 14 0.00031 35.0 20.3 62 284-346 72-149 (323)
445 KOG4460 Nuclear pore complex, 91.1 10 0.00022 37.5 14.3 92 371-497 106-200 (741)
446 KOG2377 Uncharacterized conser 90.9 9.3 0.0002 37.0 13.8 117 187-306 66-188 (657)
447 PF12234 Rav1p_C: RAVE protein 90.9 3 6.5E-05 42.8 11.5 60 433-493 41-102 (631)
448 PRK10115 protease 2; Provision 90.6 26 0.00056 37.2 31.0 109 189-302 128-254 (686)
449 PRK14131 N-acetylneuraminic ac 90.5 18 0.00039 35.2 20.0 63 432-496 279-369 (376)
450 PF07995 GSDH: Glucose / Sorbo 90.5 16 0.00035 34.7 26.9 59 432-490 270-330 (331)
451 PF10214 Rrn6: RNA polymerase 90.4 23 0.0005 38.2 18.3 114 189-304 147-277 (765)
452 KOG2377 Uncharacterized conser 90.4 18 0.00039 35.1 17.3 137 191-332 26-171 (657)
453 TIGR03547 muta_rot_YjhT mutatr 90.4 17 0.00037 34.8 19.4 53 432-486 257-331 (346)
454 KOG4460 Nuclear pore complex, 90.4 3.3 7.2E-05 40.6 10.5 76 233-308 105-203 (741)
455 PF10647 Gmad1: Lipoprotein Lp 90.3 14 0.0003 33.6 21.3 156 274-443 25-187 (253)
456 TIGR02276 beta_rpt_yvtn 40-res 90.0 1.7 3.6E-05 26.5 5.9 41 282-322 1-41 (42)
457 KOG4499 Ca2+-binding protein R 89.7 10 0.00022 33.4 11.9 102 190-291 160-272 (310)
458 PF14870 PSII_BNR: Photosynthe 89.0 20 0.00043 33.5 30.0 271 187-492 16-301 (302)
459 PF13449 Phytase-like: Esteras 88.8 22 0.00047 33.8 15.1 180 315-494 20-248 (326)
460 KOG1900 Nuclear pore complex, 88.5 24 0.00052 39.1 16.1 137 207-346 96-274 (1311)
461 smart00036 CNH Domain found in 88.4 22 0.00048 33.3 27.2 60 199-261 12-73 (302)
462 PF07569 Hira: TUP1-like enhan 88.4 5 0.00011 35.5 9.8 64 199-264 21-98 (219)
463 TIGR02276 beta_rpt_yvtn 40-res 88.4 2.8 6.1E-05 25.4 6.1 40 241-280 1-41 (42)
464 PF12768 Rax2: Cortical protei 88.1 10 0.00022 34.9 11.9 96 209-305 15-125 (281)
465 TIGR03547 muta_rot_YjhT mutatr 88.1 25 0.00055 33.6 21.1 39 295-334 168-209 (346)
466 TIGR03118 PEPCTERM_chp_1 conse 88.1 22 0.00047 32.9 20.3 209 274-497 24-281 (336)
467 PF14761 HPS3_N: Hermansky-Pud 87.8 18 0.00039 31.6 16.6 102 244-347 29-166 (215)
468 KOG2247 WD40 repeat-containing 87.7 0.063 1.4E-06 51.5 -2.7 141 186-331 33-176 (615)
469 COG4590 ABC-type uncharacteriz 87.5 4.2 9.1E-05 39.2 9.0 161 187-350 220-392 (733)
470 PLN02193 nitrile-specifier pro 87.3 35 0.00076 34.4 28.4 53 432-486 328-387 (470)
471 KOG2280 Vacuolar assembly/sort 87.2 41 0.00088 35.1 19.0 84 252-341 63-152 (829)
472 PRK14131 N-acetylneuraminic ac 87.1 31 0.00067 33.5 21.7 38 296-334 190-230 (376)
473 PLN02153 epithiospecifier prot 86.8 30 0.00064 33.1 20.3 103 199-307 32-171 (341)
474 KOG2280 Vacuolar assembly/sort 86.5 45 0.00097 34.8 18.6 51 209-262 63-113 (829)
475 PF10433 MMS1_N: Mono-function 86.2 42 0.00091 34.2 26.2 142 199-343 221-387 (504)
476 PF07250 Glyoxal_oxid_N: Glyox 85.7 19 0.00042 32.3 11.9 146 297-453 48-199 (243)
477 KOG1900 Nuclear pore complex, 85.3 68 0.0015 35.8 18.5 176 214-400 64-274 (1311)
478 KOG3616 Selective LIM binding 85.2 18 0.00038 37.4 12.4 67 188-259 15-81 (1636)
479 PF11715 Nup160: Nucleoporin N 84.9 3.6 7.8E-05 42.4 8.1 66 432-497 157-250 (547)
480 PF08801 Nucleoporin_N: Nup133 84.5 15 0.00032 36.5 11.9 29 366-399 192-220 (422)
481 PF10395 Utp8: Utp8 family; I 82.9 64 0.0014 33.6 17.9 151 187-343 129-304 (670)
482 KOG4659 Uncharacterized conser 82.1 93 0.002 34.9 20.5 22 463-484 659-680 (1899)
483 COG1520 FOG: WD40-like repeat 81.1 55 0.0012 31.7 28.2 109 201-313 69-181 (370)
484 PF12657 TFIIIC_delta: Transcr 80.9 9.6 0.00021 32.3 7.9 30 233-262 87-122 (173)
485 COG1520 FOG: WD40-like repeat 80.8 56 0.0012 31.6 23.4 102 242-347 68-174 (370)
486 PF08801 Nucleoporin_N: Nup133 80.4 46 0.001 32.9 13.7 31 466-496 190-220 (422)
487 PF07676 PD40: WD40-like Beta 80.2 10 0.00022 22.6 5.9 32 227-258 4-38 (39)
488 PLN00033 photosystem II stabil 79.9 63 0.0014 31.6 19.2 148 187-341 238-396 (398)
489 PF10214 Rrn6: RNA polymerase 79.6 96 0.0021 33.5 26.2 158 229-399 77-277 (765)
490 KOG1983 Tomosyn and related SN 79.4 79 0.0017 35.2 15.8 30 233-262 37-66 (993)
491 PF05096 Glu_cyclase_2: Glutam 79.2 50 0.0011 30.0 24.2 150 189-345 46-204 (264)
492 PF05694 SBP56: 56kDa selenium 78.6 70 0.0015 31.4 28.6 232 242-484 86-392 (461)
493 PF12657 TFIIIC_delta: Transcr 78.5 14 0.00031 31.3 8.2 30 315-344 86-121 (173)
494 KOG1898 Splicing factor 3b, su 78.3 1.1E+02 0.0024 33.5 15.6 151 189-346 879-1050(1205)
495 PF03022 MRJP: Major royal jel 78.2 58 0.0013 30.2 17.4 185 296-483 35-253 (287)
496 KOG1898 Splicing factor 3b, su 78.0 1.1E+02 0.0024 33.4 18.1 77 273-349 583-676 (1205)
497 smart00036 CNH Domain found in 77.5 63 0.0014 30.3 26.7 60 243-303 13-73 (302)
498 TIGR01063 gyrA DNA gyrase, A s 77.2 1.1E+02 0.0025 33.1 25.1 245 238-495 491-769 (800)
499 KOG3616 Selective LIM binding 77.0 27 0.00059 36.2 10.5 93 231-327 14-110 (1636)
500 KOG0783 Uncharacterized conser 76.8 83 0.0018 33.4 13.8 52 209-264 206-259 (1267)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-44 Score=318.30 Aligned_cols=309 Identities=19% Similarity=0.344 Sum_probs=258.9
Q ss_pred ceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecC
Q 010871 151 HRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGH 230 (498)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h 230 (498)
.........+.+.|+|......+ +...+||..-|.||+|+| +|+.||+|+.||+|++||..++....+.|.+|
T Consensus 127 g~~l~tGsGD~TvR~WD~~TeTp------~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH 199 (480)
T KOG0271|consen 127 GSRLVTGSGDTTVRLWDLDTETP------LFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQQIGRALRGH 199 (480)
T ss_pred CceEEecCCCceEEeeccCCCCc------ceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCCCCcccccccCc
Confidence 33445556677788887776543 345689999999999999 99999999999999999999977888999999
Q ss_pred CCCeEEEEEcc-----CCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC
Q 010871 231 SKDVTDFDFSS-----NNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFST 304 (498)
Q Consensus 231 ~~~V~~l~~s~-----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 304 (498)
...|++|+|.| ..++|++++.||+|+|||+..+.++..+.+|. +|.|+.|- +..++++|+.|++|++|+...
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccc
Confidence 99999999977 56799999999999999999999999999996 78899996 457999999999999999999
Q ss_pred CcEEEEe-ecCCCeEEEEEc-----------CCCC-------------------------EEEEEcCCCeEEEEEccCCc
Q 010871 305 GRIIKKL-VVDSEVTSMDHD-----------HTGQ-------------------------LLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 305 ~~~~~~~-~~~~~i~~l~~~-----------~~~~-------------------------~l~~~~~dg~i~i~d~~~~~ 347 (498)
|.+...+ .|...|+.++.+ |.++ .|++|+.|.++.+|+-....
T Consensus 278 G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k 357 (480)
T KOG0271|consen 278 GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK 357 (480)
T ss_pred hhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc
Confidence 9999888 588888888776 3333 49999999999999865443
Q ss_pred ccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceee-eEEEEee
Q 010871 348 GALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHS-IRASFCP 426 (498)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 426 (498)
....+ ..+|...|+.+.|+ ||++++++++.|..|++||.+++.. ...+.+++.. ..++|+.
T Consensus 358 kpi~r------mtgHq~lVn~V~fS-----Pd~r~IASaSFDkSVkLW~g~tGk~-------lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 358 KPITR------MTGHQALVNHVSFS-----PDGRYIASASFDKSVKLWDGRTGKF-------LASFRGHVAAVYQVAWSA 419 (480)
T ss_pred cchhh------hhchhhheeeEEEC-----CCccEEEEeecccceeeeeCCCcch-------hhhhhhccceeEEEEecc
Confidence 22222 36888889988887 9999999999999999999987622 1122222222 1235554
Q ss_pred eeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 427 ~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
|.++|++|+.|.++++|++++ ......+.||.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 420 -----DsRLlVS~SkDsTLKvw~V~t--kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 420 -----DSRLLVSGSKDSTLKVWDVRT--KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -----CccEEEEcCCCceEEEEEeee--eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999 446888999999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-44 Score=318.42 Aligned_cols=295 Identities=21% Similarity=0.296 Sum_probs=243.4
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
..+.||.++|.|++|+| ++..||+|+.|.++++||+.+ ..+..+.++|...|.|++|+|||+.|++|+.||+|++||.
T Consensus 109 sS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~T-eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDT-ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred cccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCC-CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 35789999999999999 999999999999999999999 8899999999999999999999999999999999999999
Q ss_pred CCCcEE-EEEecCC-CeEEEEEEcC----CCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEc
Q 010871 261 TKGDCI-RVIYGVS-SQLCIRFHPV----NNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 261 ~~~~~~-~~~~~~~-~v~~i~~~~~----~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~ 333 (498)
.+|+++ +.+.+|. .|.+++|.|- ...+|++++.||.|+|||+..++++..+ .|..+|+|+.|--+ .+|++|+
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS 265 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGS 265 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecC
Confidence 988654 5677885 7889999874 3468999999999999999999999888 69999999999654 4899999
Q ss_pred CCCeEEEEEccCCcccccccccccccCCCccceeeEEEe------EeeEcCC-------------------------CcE
Q 010871 334 AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYR------SFSLLAG-------------------------GPV 382 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~s~~-------------------------~~~ 382 (498)
.|++|++|+... +.+.+. +.+|...|+.+..+ .-++.+. +..
T Consensus 266 ~DrtIkvw~a~d--G~~~r~-----lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er 338 (480)
T KOG0271|consen 266 QDRTIKVWRALD--GKLCRE-----LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER 338 (480)
T ss_pred CCceEEEEEccc--hhHHHh-----hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence 999999998654 333222 36777778777654 1122233 345
Q ss_pred EEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec
Q 010871 383 LLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ 462 (498)
Q Consensus 383 l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~ 462 (498)
|++|+.|.++.+|+-....+.. .....+...+ ..+.|+| |+++||+++.|..|++|+..+++ .+..|+
T Consensus 339 lVSgsDd~tlflW~p~~~kkpi---~rmtgHq~lV--n~V~fSP-----d~r~IASaSFDkSVkLW~g~tGk--~lasfR 406 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKKPI---TRMTGHQALV--NHVSFSP-----DGRYIASASFDKSVKLWDGRTGK--FLASFR 406 (480)
T ss_pred eEEecCCceEEEecccccccch---hhhhchhhhe--eeEEECC-----CccEEEEeecccceeeeeCCCcc--hhhhhh
Confidence 9999999999999865332111 0111111111 2235555 99999999999999999999965 589999
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 463 GHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 463 ~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
||-+.|+.++|+.|.++|++|+.|.++++|++.+.
T Consensus 407 GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred hccceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 99999999999999999999999999999999764
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.6e-43 Score=312.22 Aligned_cols=283 Identities=19% Similarity=0.287 Sum_probs=248.8
Q ss_pred ecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccC--CCEEEEEeCCCcEEEEECC
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSN--NQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~s~dg~v~iwd~~ 261 (498)
.|-+.+|..+.|+. +++.||||+.+|.++||+..+ ...+.+|.||...|.++.|+|. +..|+||+.||++++|+++
T Consensus 172 ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~-~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQ-CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ccCCCcceeeEeec-CCCeEEEeecCCceeEeecCC-cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 45578999999999 999999999999999999998 6889999999999999999997 5689999999999999999
Q ss_pred CCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEE
Q 010871 262 KGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 262 ~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
+...+..+.+|. .|..++|+| ++.+|.+++.|.+-++||++++..+... +|...|.+++|.++|.++++|+.|..-+
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R 328 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR 328 (459)
T ss_pred CCcchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence 999999999985 788999999 5689999999999999999998776655 6999999999999999999999999999
Q ss_pred EEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceee
Q 010871 340 SISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHS 419 (498)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 419 (498)
+||+++....+. +.+|..+|.++.|+ |+|..|+||+.|++++|||++.....+. ...+...+..
T Consensus 329 vWDlRtgr~im~-------L~gH~k~I~~V~fs-----PNGy~lATgs~Dnt~kVWDLR~r~~ly~----ipAH~nlVS~ 392 (459)
T KOG0272|consen 329 VWDLRTGRCIMF-------LAGHIKEILSVAFS-----PNGYHLATGSSDNTCKVWDLRMRSELYT----IPAHSNLVSQ 392 (459)
T ss_pred eeecccCcEEEE-------ecccccceeeEeEC-----CCceEEeecCCCCcEEEeeeccccccee----cccccchhhh
Confidence 999987665543 37799999999988 9999999999999999999986533111 1111122222
Q ss_pred eEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 420 IRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
+.|.| ..|.+|++++.|++++||...+ ..++..+.||.+.|.+++.++++.+++|++.|.++++|.
T Consensus 393 --Vk~~p----~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 393 --VKYSP----QEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --eEecc----cCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 25554 3799999999999999999998 678999999999999999999999999999999999995
No 4
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.6e-41 Score=286.21 Aligned_cols=294 Identities=20% Similarity=0.269 Sum_probs=257.2
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
..+.||++.|+.+.|+| +|.+||+|+.|..|.+|++....+....+++|+++|..+.|.+|+..|++++.|.+|+.||+
T Consensus 41 m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 35689999999999999 99999999999999999987767778899999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCeE-EEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEE
Q 010871 261 TKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 261 ~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
++|++++.+++|...+ .+.-...+..++.+|+.|+++++||+++...++++.....++++.|..++..+.+|+-|+.|+
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ik 199 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIK 199 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCcee
Confidence 9999999999998665 444444467889999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccccccee--eEeEeeccCCce
Q 010871 340 SISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYL--TFRCSLKLAPRV 417 (498)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~ 417 (498)
+||++....... ..+|..+|+.+... ++|.++++-+.|.++++||++.-...+. .......+....
T Consensus 200 vWd~r~~d~~~~-------lsGh~DtIt~lsls-----~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 200 VWDLRKNDGLYT-------LSGHADTITGLSLS-----RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred eeccccCcceEE-------eecccCceeeEEec-----cCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence 999976655443 37899999998876 9999999999999999999985433222 222223344455
Q ss_pred eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 418 HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
+.+.++|+| ++..+.+|+.|..+++||... ...+..+.||.+.|++++|+|...+|.+++.|.+|++=++
T Consensus 268 nlL~cswsp-----~~~~i~ags~dr~vyvwd~~~--r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 268 NLLKCSWSP-----NGTKITAGSADRFVYVWDTTS--RRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred hcceeeccC-----CCCccccccccceEEEeeccc--ccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 667778887 999999999999999999998 5578999999999999999999999999999999987544
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.8e-39 Score=275.24 Aligned_cols=288 Identities=16% Similarity=0.250 Sum_probs=247.0
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
...+|+||.+.|.++.|++ +.++|++++.||.+.|||.-+ ...++.+.-....|..++|+|.|++++.|+.|+...||
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~T-tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFT-TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEccc-ccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 4568999999999999999 999999999999999999988 66677777788999999999999999999999999999
Q ss_pred ECCCC------cEEEEEecCCC-eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcC-CCCEE
Q 010871 259 ELTKG------DCIRVIYGVSS-QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDH-TGQLL 329 (498)
Q Consensus 259 d~~~~------~~~~~~~~~~~-v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~-~~~~l 329 (498)
++.+. +..+.+.+|.. +.|+.|.+ ...|++++.|.++.+||+++++.+..+ .|...|.+++++| +++.+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 99855 45567888875 45777776 468899999999999999999999999 6999999999999 89999
Q ss_pred EEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeE
Q 010871 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRC 409 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 409 (498)
++|+.|+..++||++...... .+.+|.+.|+++.|. |+|.-|++|+.|++.++||++...+..
T Consensus 203 vSg~cD~~aklWD~R~~~c~q-------tF~ghesDINsv~ff-----P~G~afatGSDD~tcRlyDlRaD~~~a----- 265 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQCVQ-------TFEGHESDINSVRFF-----PSGDAFATGSDDATCRLYDLRADQELA----- 265 (343)
T ss_pred EecccccceeeeeccCcceeE-------eecccccccceEEEc-----cCCCeeeecCCCceeEEEeecCCcEEe-----
Confidence 999999999999998664333 258999999999998 999999999999999999999653211
Q ss_pred eeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 010871 410 SLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIV 489 (498)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i 489 (498)
..... .+...+..+.++..|++|++|..|.++.+||.-.++ .+..+.+|...|+++..+|||..|+||+.|.+|
T Consensus 266 ~ys~~----~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e--~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 266 VYSHD----SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE--RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred eeccC----cccCCceeEEEcccccEEEeeecCCceeEeeccccc--eEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence 11111 111233344444599999999999999999998854 588899999999999999999999999999999
Q ss_pred EEee
Q 010871 490 IVWK 493 (498)
Q Consensus 490 ~iW~ 493 (498)
+||.
T Consensus 340 riW~ 343 (343)
T KOG0286|consen 340 RIWA 343 (343)
T ss_pred eecC
Confidence 9994
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-38 Score=289.18 Aligned_cols=350 Identities=18% Similarity=0.272 Sum_probs=275.9
Q ss_pred ccccccccccccccCCCCCCCceeeeeecCCCCCCCc--------cCCCCCcceeecceeeeecccccEEEEEEecCCCC
Q 010871 130 LYEVDSWSSSRDLRSGNLASSHRTSFSSTASDSDQPR--------RQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSD 201 (498)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~ 201 (498)
+...-.|+....+.+..++.....+..-...++.|+. .++++|+|+| +..+..|..-|+|+.|+| +|.
T Consensus 128 fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF---k~s~r~HskFV~~VRysP-DG~ 203 (603)
T KOG0318|consen 128 FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF---KSSFREHSKFVNCVRYSP-DGS 203 (603)
T ss_pred eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee---eecccccccceeeEEECC-CCC
Confidence 3445588888888888888888877777777777765 7888999999 446788999999999999 899
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeEEee---cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC----
Q 010871 202 LLAYGASDGTLTVCTVSDPPKVIKLLN---GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSS---- 274 (498)
Q Consensus 202 ~lasg~~dg~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~---- 274 (498)
++|+++.||+|.|||-.+ ++.+..+. +|.+.|.+|+|+||++.|+|+|.|.+++|||+.+.++++++.....
T Consensus 204 ~Fat~gsDgki~iyDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dq 282 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKT-GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQ 282 (603)
T ss_pred eEEEecCCccEEEEcCCC-ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhce
Confidence 999999999999999998 88888887 8999999999999999999999999999999999999999876543
Q ss_pred eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccc-
Q 010871 275 QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSR- 352 (498)
Q Consensus 275 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~- 352 (498)
...+.|. +..|++.+.+|.|.+++...+..+..+ +|...|+++..++++.+|++|+.||.|.-|+..........
T Consensus 283 qvG~lWq---kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g 359 (603)
T KOG0318|consen 283 QVGCLWQ---KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG 359 (603)
T ss_pred EEEEEEe---CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc
Confidence 3456664 357888889999999999999977777 69999999999999999999999999999997544322110
Q ss_pred -ccc--ccccCCCc-ccee-------------------------------eE----------------------------
Q 010871 353 -SHR--HRTTGKRK-CPVT-------------------------------TV---------------------------- 369 (498)
Q Consensus 353 -~~~--~~~~~~~~-~~i~-------------------------------~~---------------------------- 369 (498)
.+. ......+. +.+. ++
T Consensus 360 ~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~ 439 (603)
T KOG0318|consen 360 KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSS 439 (603)
T ss_pred ccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCccee
Confidence 000 00000000 0000 00
Q ss_pred -----EEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCc
Q 010871 370 -----QYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSN 444 (498)
Q Consensus 370 -----~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~ 444 (498)
....++++|++..+++|+.|+.|++|.+..... ........+...+..+ +|+| |+.|||+|...+.
T Consensus 440 ~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l--~ee~~~~~h~a~iT~v--aySp-----d~~yla~~Da~rk 510 (603)
T KOG0318|consen 440 IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL--KEEAKLLEHRAAITDV--AYSP-----DGAYLAAGDASRK 510 (603)
T ss_pred eccccccceEEEcCCCCEEEEecccceEEEEEecCCcc--cceeeeecccCCceEE--EECC-----CCcEEEEeccCCc
Confidence 003567779999999999999999999985422 1111222333333333 5555 9999999999999
Q ss_pred EEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 445 VYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 445 I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
|.+||+.+.+. ....+.-|...|.+|+|+|+..+||||+.|-.|.||+++++
T Consensus 511 vv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 511 VVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred EEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 99999998653 33445569999999999999999999999999999999875
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-38 Score=266.91 Aligned_cols=290 Identities=19% Similarity=0.259 Sum_probs=235.9
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC----CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCc
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP----PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKT 254 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~----~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~ 254 (498)
.+..+.+|++.|+.++..+.+.+.|++++.|.++.+|++... +.+++.+.||+..|..+..++||++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 467899999999999999977889999999999999998753 4668899999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec--CCCeEEEEEcCC--CCEE
Q 010871 255 VRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV--DSEVTSMDHDHT--GQLL 329 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~i~~l~~~~~--~~~l 329 (498)
+++||+.+++..+.|.+|. .+.+++|+++ ...+++|+.|.+|++|++........... ...|.|++|+|+ ..+|
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~d-n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTD-NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCC-CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence 9999999999999999996 7889999995 58999999999999999975544443333 678999999998 5799
Q ss_pred EEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeE
Q 010871 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRC 409 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 409 (498)
+.++.|+.|++||++..+... .+.+|.+.++.+.++ |||...++|+.||.+.+||++.+..
T Consensus 166 vs~s~DktvKvWnl~~~~l~~-------~~~gh~~~v~t~~vS-----pDGslcasGgkdg~~~LwdL~~~k~------- 226 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRT-------TFIGHSGYVNTVTVS-----PDGSLCASGGKDGEAMLWDLNEGKN------- 226 (315)
T ss_pred EEccCCceEEEEccCCcchhh-------ccccccccEEEEEEC-----CCCCEEecCCCCceEEEEEccCCce-------
Confidence 999999999999997544322 236788899988877 9999999999999999999985532
Q ss_pred eeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC----C-----CCCeEEEEEcCCCCEE
Q 010871 410 SLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG----H-----RFPVVAVAWNHGENLL 480 (498)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~----h-----~~~V~~l~~sp~~~~l 480 (498)
...+........++|+| +...|+ ...+..|+|||+.+.. ++..+.- . .....+++|++||..|
T Consensus 227 lysl~a~~~v~sl~fsp-----nrywL~-~at~~sIkIwdl~~~~--~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 227 LYSLEAFDIVNSLCFSP-----NRYWLC-AATATSIKIWDLESKA--VVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred eEeccCCCeEeeEEecC-----CceeEe-eccCCceEEEeccchh--hhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 22233333333447776 544444 4455569999999843 4444431 1 2234667999999999
Q ss_pred EEEeCCCeEEEeecCC
Q 010871 481 ASSDLYGIVIVWKRAK 496 (498)
Q Consensus 481 ~s~~~Dg~i~iW~~~~ 496 (498)
++|-.|+.|++|.+..
T Consensus 299 f~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQVAK 314 (315)
T ss_pred EeeecCCcEEEEEeec
Confidence 9999999999999864
No 8
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.1e-40 Score=300.20 Aligned_cols=298 Identities=19% Similarity=0.347 Sum_probs=248.7
Q ss_pred ecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 010871 177 VGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVR 256 (498)
Q Consensus 177 ~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~ 256 (498)
..+...+.||+..|+++.|.|..+.+|++|+.|+.|+||++...+.+++++.+|..+|.+++|+++|..++|+|.|+.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 34566899999999999999988999999999999999999988899999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCC
Q 010871 257 VWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQ 335 (498)
Q Consensus 257 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d 335 (498)
+||+++|+++..+.....+.|+.|+|++.+++++|+.|+.|+.||+++++.++.+ .|-+.|..+.|-++|+.+++.+.|
T Consensus 284 lwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 284 LWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999999999999999999999899999999999999999999998888 477899999999999999999999
Q ss_pred CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCC
Q 010871 336 GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAP 415 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 415 (498)
+.+++|+.+.......... ...|.. .+ +...|++++++.-+.|..|.+|.+........ .+....+..
T Consensus 364 ks~riWe~~~~v~ik~i~~----~~~hsm--P~-----~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk-kK~feGh~v 431 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIAD----PEMHTM--PC-----LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK-KKRFEGHSV 431 (503)
T ss_pred ccEEEEEcCCCccchhhcc----hhhccC--cc-----eecCCCCCeehhhccCceEEEEecccccccCH-hhhhcceec
Confidence 9999999864432211110 122222 22 33349999999999999999998753211000 000011122
Q ss_pred ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEee
Q 010871 416 RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE-NLLASSDLYGIVIVWK 493 (498)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~Dg~i~iW~ 493 (498)
....+.+.|+| ||.+|++|+.||.+.+||.++. ..+..+++|.+++..+.|+|.. ..+|||+.||.|++|+
T Consensus 432 aGys~~v~fSp-----DG~~l~SGdsdG~v~~wdwkt~--kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 AGYSCQVDFSP-----DGRTLCSGDSDGKVNFWDWKTT--KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCceeeEEEcC-----CCCeEEeecCCccEEEeechhh--hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 23344456665 9999999999999999999994 4688999999999999999964 5899999999999996
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.4e-38 Score=261.46 Aligned_cols=277 Identities=14% Similarity=0.224 Sum_probs=232.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--EEEEEecC-CCeE
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD--CIRVIYGV-SSQL 276 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~-~~v~ 276 (498)
.-+||++|.|.+|++|...+ +.+.++++.....|..|...|+++.|++++.- .||+||+.++. ++.++.+| ..|.
T Consensus 10 ~viLvsA~YDhTIRfWqa~t-G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALT-GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeehhc-CeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence 35899999999999999999 89999999888899999999999999998865 69999999774 68899999 6899
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccc
Q 010871 277 CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRH 356 (498)
Q Consensus 277 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 356 (498)
.+.|.. +++.+++|+.||+++|||++...+.+.+++..+|+++..+|+...|++|+.+|.|++||+..........
T Consensus 88 aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li--- 163 (311)
T KOG0315|consen 88 AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI--- 163 (311)
T ss_pred EEEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC---
Confidence 999998 5589999999999999999999888899999999999999999999999999999999998765443322
Q ss_pred cccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeecc-CCceeeeEEEEeeeeeccCCCE
Q 010871 357 RTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKL-APRVHSIRASFCPLLSLEKGEY 435 (498)
Q Consensus 357 ~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 435 (498)
.....+|.++.+. ++|.+++.+...|..++|++-...... .+....++ ....+.+++.++| |+++
T Consensus 164 ---Pe~~~~i~sl~v~-----~dgsml~a~nnkG~cyvW~l~~~~~~s-~l~P~~k~~ah~~~il~C~lSP-----d~k~ 229 (311)
T KOG0315|consen 164 ---PEDDTSIQSLTVM-----PDGSMLAAANNKGNCYVWRLLNHQTAS-ELEPVHKFQAHNGHILRCLLSP-----DVKY 229 (311)
T ss_pred ---CCCCcceeeEEEc-----CCCcEEEEecCCccEEEEEccCCCccc-cceEhhheecccceEEEEEECC-----CCcE
Confidence 2233556666655 999999999999999999987632211 11111112 2233445556666 9999
Q ss_pred EEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 436 IVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 436 l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
||+++.|.+++||+..+- ......+++|...+.+++||.||.+|+||+.|+.+++|+++.+
T Consensus 230 lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred EEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence 999999999999999985 3556778999999999999999999999999999999999865
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-37 Score=270.20 Aligned_cols=291 Identities=20% Similarity=0.384 Sum_probs=255.0
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
...+.||..+|+.+-|+| +-.++++++.|++|++||..+ +++...++||...|..++|+..|++|++++.|-.+++||
T Consensus 101 ~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~t-g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTET-GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred hhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccc-hhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 345688999999999999 888999999999999999999 888999999999999999999999999999999999999
Q ss_pred CCC-CcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCC
Q 010871 260 LTK-GDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQG 336 (498)
Q Consensus 260 ~~~-~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg 336 (498)
.++ .++++.+.+|. .+.++.|.|.+ .++++++.|.+|+.|++.++-++.++ .|...|..++.+.||.++++++.|.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq 257 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ 257 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCc
Confidence 987 57777777775 67799999965 89999999999999999999999999 5888999999999999999999999
Q ss_pred eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC----------CCcEEEEEEcCCcEEEEEccccccceee
Q 010871 337 CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA----------GGPVLLTCTQDGNLSFFSVALEIQGYLT 406 (498)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~----------~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 406 (498)
+|++|-+........ +..|..+|.++.|.+....| .+.++.+++.|++|++||+.++
T Consensus 258 tl~vW~~~t~~~k~~-------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg------ 324 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAE-------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG------ 324 (406)
T ss_pred eEEEEEeccchhhhh-------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC------
Confidence 999998876654433 36788999999998765443 2369999999999999999865
Q ss_pred EeEeeccCCceeeeEE-EEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 010871 407 FRCSLKLAPRVHSIRA-SFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDL 485 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~ 485 (498)
.+.+.+.++...++. +|+| .|+||+++.+|+++++||+++ +++...+..|..-|++++|+.+..+++||+-
T Consensus 325 -~cL~tL~ghdnwVr~~af~p-----~Gkyi~ScaDDktlrvwdl~~--~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV 396 (406)
T KOG0295|consen 325 -MCLFTLVGHDNWVRGVAFSP-----GGKYILSCADDKTLRVWDLKN--LQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV 396 (406)
T ss_pred -eEEEEEecccceeeeeEEcC-----CCeEEEEEecCCcEEEEEecc--ceeeeccCCCcceeEEEecCCCCceEEeccc
Confidence 455555555444432 5665 999999999999999999999 6689999999999999999999999999999
Q ss_pred CCeEEEeec
Q 010871 486 YGIVIVWKR 494 (498)
Q Consensus 486 Dg~i~iW~~ 494 (498)
|.++++|.-
T Consensus 397 dqt~KvwEc 405 (406)
T KOG0295|consen 397 DQTVKVWEC 405 (406)
T ss_pred cceeeeeec
Confidence 999999974
No 11
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-37 Score=273.71 Aligned_cols=290 Identities=22% Similarity=0.341 Sum_probs=237.3
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC--ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP--KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
.++..|++.|+-+.||+ +|++||+++.|.+..||++.... +..+++.+|..+|..+.|+||.++|++|+.|..+.+|
T Consensus 218 qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 46788999999999999 99999999999999999987533 4577889999999999999999999999999999999
Q ss_pred ECCCCcEEEEEecC--CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee--cCCCeEEEEEcCCCCEEEEEcC
Q 010871 259 ELTKGDCIRVIYGV--SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV--VDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 259 d~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
|+.+|.+...+... ..+.+++|.|++ ..+++|+.|+++..||+.. ..+...+ ....|.+++..+||+++++.+.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 99999988887655 578899999965 6788999999999999864 3333332 3357999999999999999999
Q ss_pred CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccC
Q 010871 335 QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLA 414 (498)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 414 (498)
|..|++|+.......- ......+|++..++ .+++++++.-.+..+.+||+.... ..+....+.
T Consensus 375 d~~i~l~~~e~~~dr~--------lise~~~its~~iS-----~d~k~~LvnL~~qei~LWDl~e~~----lv~kY~Ghk 437 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRG--------LISEEQPITSFSIS-----KDGKLALVNLQDQEIHLWDLEENK----LVRKYFGHK 437 (519)
T ss_pred ccceeeechhhhhhhc--------cccccCceeEEEEc-----CCCcEEEEEcccCeeEEeecchhh----HHHHhhccc
Confidence 9999999886543221 13344567766655 999999999999999999998321 111222233
Q ss_pred CceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEee
Q 010871 415 PRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE-NLLASSDLYGIVIVWK 493 (498)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~Dg~i~iW~ 493 (498)
.....++.+|.. .+..++++|++|+.|+||+..+++ ++..+.||...|++|+|+|.. .++|+||+||+||||.
T Consensus 438 q~~fiIrSCFgg----~~~~fiaSGSED~kvyIWhr~sgk--ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 438 QGHFIIRSCFGG----GNDKFIASGSEDSKVYIWHRISGK--LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred ccceEEEeccCC----CCcceEEecCCCceEEEEEccCCc--eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 334445556654 466899999999999999999965 799999999999999999954 6899999999999998
Q ss_pred cCC
Q 010871 494 RAK 496 (498)
Q Consensus 494 ~~~ 496 (498)
..+
T Consensus 512 ~~~ 514 (519)
T KOG0293|consen 512 PSD 514 (519)
T ss_pred CCc
Confidence 764
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-35 Score=247.96 Aligned_cols=297 Identities=20% Similarity=0.288 Sum_probs=242.8
Q ss_pred CceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc-eeEEee
Q 010871 150 SHRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK-VIKLLN 228 (498)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~-~~~~~~ 228 (498)
...+..++.++.++|.|....+..+.-+ ..-.+.|+.+...| +++.||+|+. -.|++||+.+... ++.++.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTi------qh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e 80 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTI------QHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFE 80 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEE------ecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEe
Confidence 4567778888999999877766554433 22256799999999 9999999886 4599999997543 789999
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEE
Q 010871 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRII 308 (498)
Q Consensus 229 ~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 308 (498)
+|...|+++.|..+|+.+++||+||+++|||++...+.+.+....+|.++..+| +...|++|..+|.|++||+....+.
T Consensus 81 ~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 81 GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccc
Confidence 999999999999999999999999999999999988888888889999999999 5678889999999999999988777
Q ss_pred EEe--ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEE
Q 010871 309 KKL--VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC 386 (498)
Q Consensus 309 ~~~--~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~ 386 (498)
..+ .....|.++.+.|+|.+++.+...|..++|++-...... ...+...+..|.+.+....++ |++++|+++
T Consensus 160 ~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s-~l~P~~k~~ah~~~il~C~lS-----Pd~k~lat~ 233 (311)
T KOG0315|consen 160 HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS-ELEPVHKFQAHNGHILRCLLS-----PDVKYLATC 233 (311)
T ss_pred cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc-cceEhhheecccceEEEEEEC-----CCCcEEEee
Confidence 766 355789999999999999999999999999987643322 222333467888888888776 999999999
Q ss_pred EcCCcEEEEEccccccceeeEeEeeccC-CceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCC
Q 010871 387 TQDGNLSFFSVALEIQGYLTFRCSLKLA-PRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHR 465 (498)
Q Consensus 387 s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~ 465 (498)
+.|.+++||+.+... ....... +......+.|+. ||.||++|+.|+.+++|++..++ .+..+.+|.
T Consensus 234 ssdktv~iwn~~~~~------kle~~l~gh~rWvWdc~FS~-----dg~YlvTassd~~~rlW~~~~~k--~v~qy~gh~ 300 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDFF------KLELVLTGHQRWVWDCAFSA-----DGEYLVTASSDHTARLWDLSAGK--EVRQYQGHH 300 (311)
T ss_pred cCCceEEEEecCCce------eeEEEeecCCceEEeeeecc-----CccEEEecCCCCceeecccccCc--eeeecCCcc
Confidence 999999999987431 1111222 223344556666 99999999999999999999955 588899999
Q ss_pred CCeEEEEEc
Q 010871 466 FPVVAVAWN 474 (498)
Q Consensus 466 ~~V~~l~~s 474 (498)
....|++.+
T Consensus 301 K~~vc~~ln 309 (311)
T KOG0315|consen 301 KAAVCVALN 309 (311)
T ss_pred cccEEEEee
Confidence 888888764
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-37 Score=276.68 Aligned_cols=263 Identities=21% Similarity=0.261 Sum_probs=222.4
Q ss_pred eecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecC-CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCe
Q 010871 156 SSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHM-SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDV 234 (498)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V 234 (498)
...-++...+|..... ...+.|.||++.|.++.|+|. ++..+|||+.||++++|++.+ ..++..+.+|...|
T Consensus 192 T~swsG~~kvW~~~~~------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-e~~l~~l~gH~~RV 264 (459)
T KOG0272|consen 192 TGSWSGLVKVWSVPQC------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-ETPLQDLEGHLARV 264 (459)
T ss_pred EeecCCceeEeecCCc------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-Ccchhhhhcchhhh
Confidence 3344555555543333 245689999999999999996 367999999999999999998 78899999999999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-e
Q 010871 235 TDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-V 312 (498)
Q Consensus 235 ~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~ 312 (498)
..++|+|+|++|+|+|.|.+-++||++++..+....+|+ ++.+++|+++ +.++++|+.|..-+|||+++|+++-.+ .
T Consensus 265 s~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~D-GSL~~tGGlD~~~RvWDlRtgr~im~L~g 343 (459)
T KOG0272|consen 265 SRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPD-GSLAATGGLDSLGRVWDLRTGRCIMFLAG 343 (459)
T ss_pred eeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCC-CceeeccCccchhheeecccCcEEEEecc
Confidence 999999999999999999999999999999988888886 7889999995 589999999999999999999999888 6
Q ss_pred cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcE
Q 010871 313 VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNL 392 (498)
Q Consensus 313 ~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i 392 (498)
|...|.+++|+|+|..|++|+.|++++|||++...... ...+|..-|+.|.|.+ ..|.+|+|++.|+++
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly-------~ipAH~nlVS~Vk~~p----~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY-------TIPAHSNLVSQVKYSP----QEGYFLVTASYDNTV 412 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCcEEEeeecccccce-------ecccccchhhheEecc----cCCeEEEEcccCcce
Confidence 99999999999999999999999999999998765522 2478999999999983 278999999999999
Q ss_pred EEEEccccccceeeEeEeeccCCc-eeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEE
Q 010871 393 SFFSVALEIQGYLTFRCSLKLAPR-VHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYD 449 (498)
Q Consensus 393 ~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd 449 (498)
++|...+. .+...+.++ ...+.+.+++ ++.+|++++.|.++++|.
T Consensus 413 kiWs~~~~-------~~~ksLaGHe~kV~s~Dis~-----d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 413 KIWSTRTW-------SPLKSLAGHEGKVISLDISP-----DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeecCCCc-------ccchhhcCCccceEEEEecc-----CCceEEEeccCceeeecc
Confidence 99998743 222222222 2334445665 999999999999999995
No 14
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-35 Score=259.79 Aligned_cols=295 Identities=16% Similarity=0.246 Sum_probs=239.8
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
..|..|++.|.+++.+| +.+++|||+.|..-.||++.+ +.....+.+|...|+++.|+.+|.+|+||..+|.|+||..
T Consensus 58 ~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~-ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDIST-GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred eehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccC-CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46899999999999999 999999999999999999998 7788899999999999999999999999999999999999
Q ss_pred CCCcEEEEEe-cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 261 TKGDCIRVIY-GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 261 ~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
.++.....+. ....+..+.|+| ...+|++|+.||.+.+|.+.++...+.+ +|..++++-.|.|+|+.++++..||+|
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti 214 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI 214 (399)
T ss_pred ccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence 9998888886 456888999999 6689999999999999999987666666 689999999999999999999999999
Q ss_pred EEEEccCCccccccc------ccccc--------------------------------------cCCCccceeeEEEeEe
Q 010871 339 YSISMESHSGALSRS------HRHRT--------------------------------------TGKRKCPVTTVQYRSF 374 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~------~~~~~--------------------------------------~~~~~~~i~~~~~~~~ 374 (498)
++|++.+........ ..... ...+...+.++.+.
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~-- 292 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI-- 292 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc--
Confidence 999987654322211 00000 00111112222222
Q ss_pred eEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC
Q 010871 375 SLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 375 ~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~ 454 (498)
.++..=.+.++|+.||+|.|||+... .++....+...+ +++.|- ...+|++++.+|.|+.||.+++.
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~-----~~R~~c~he~~V--~~l~w~------~t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAAS-----TLRHICEHEDGV--TKLKWL------NTDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred ccccccchhhcccccceEEEEecccc-----hhheeccCCCce--EEEEEc------CcchheeeccCceEEeeeccccc
Confidence 12244457889999999999999743 333333344443 333444 25889999999999999999954
Q ss_pred ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 455 HSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 455 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
++..+.||...|.+++++|+.++++|+|.|++.+||++.
T Consensus 360 --l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 --LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred --eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 789999999999999999999999999999999999875
No 15
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=244.07 Aligned_cols=289 Identities=21% Similarity=0.349 Sum_probs=228.8
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC--CceeEEe-ecCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP--PKVIKLL-NGHSKDVTDFDFSSNNQYIASSSMDKTVR 256 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~--~~~~~~~-~~h~~~V~~l~~s~~~~~l~s~s~dg~v~ 256 (498)
...+.||++.|..++|+|..|.+||+|+.|..|+||+...+ -.+...+ .+|+..|.+++|+|.|++|++||.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 34678999999999999933889999999999999999842 2333334 37999999999999999999999999999
Q ss_pred EEECCCC--cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC---cEEEEe-ecCCCeEEEEEcCCCCEE
Q 010871 257 VWELTKG--DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTG---RIIKKL-VVDSEVTSMDHDHTGQLL 329 (498)
Q Consensus 257 iwd~~~~--~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~-~~~~~i~~l~~~~~~~~l 329 (498)
||.-..+ +++.++.+|. .|.|++|++ ++++|++++.|..|-||.+..+ ++...+ .|...|..+.|+|...+|
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 9987754 7888999995 788999999 5689999999999999998754 355555 588999999999999999
Q ss_pred EEEcCCCeEEEEEccC-CcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEe
Q 010871 330 FCGDAQGCIYSISMES-HSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFR 408 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~ 408 (498)
++++.|.+|++|.-.. ..-... ..+.+|...|.++.|. +.|..|++++.|++++||.......
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~-----~tl~g~~~TVW~~~F~-----~~G~rl~s~sdD~tv~Iw~~~~~~~------ 229 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECV-----QTLDGHENTVWSLAFD-----NIGSRLVSCSDDGTVSIWRLYTDLS------ 229 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEE-----EEecCccceEEEEEec-----CCCceEEEecCCcceEeeeeccCcc------
Confidence 9999999999997653 211111 1247788889999887 8899999999999999998542211
Q ss_pred EeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCC----Ccccee-eecCCCCCeEEEEEcCC-CCEEEE
Q 010871 409 CSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP----KHSCVN-KLQGHRFPVVAVAWNHG-ENLLAS 482 (498)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~----~~~~~~-~~~~h~~~V~~l~~sp~-~~~l~s 482 (498)
..+...+..+ .| +...|++++.|+.|++|.-... ....+. .-..|...|++++|+|. .++|++
T Consensus 230 --~~~sr~~Y~v--~W-------~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s 298 (312)
T KOG0645|consen 230 --GMHSRALYDV--PW-------DNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLAS 298 (312)
T ss_pred --hhcccceEee--ee-------cccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceee
Confidence 1111222222 33 2467999999999999987642 122222 33568999999999995 679999
Q ss_pred EeCCCeEEEeecCC
Q 010871 483 SDLYGIVIVWKRAK 496 (498)
Q Consensus 483 ~~~Dg~i~iW~~~~ 496 (498)
|+.||.|++|.+.+
T Consensus 299 ~~DDG~v~~W~l~~ 312 (312)
T KOG0645|consen 299 GGDDGIVNFWELEI 312 (312)
T ss_pred cCCCceEEEEEecC
Confidence 99999999999863
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.5e-37 Score=270.80 Aligned_cols=284 Identities=17% Similarity=0.254 Sum_probs=236.7
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
+.+|..|.|.| +|+.|++|+..|.+.+|+... ......++.|..+|.++.|++++.+++||+.+|.|++|+..-.. +
T Consensus 96 kc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-V 172 (464)
T KOG0284|consen 96 KCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-V 172 (464)
T ss_pred ccceeeEEEcC-CCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-h
Confidence 56899999999 999999999999999999865 55566788999999999999999999999999999999976443 3
Q ss_pred EEEe-cC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEc
Q 010871 267 RVIY-GV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISM 343 (498)
Q Consensus 267 ~~~~-~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~ 343 (498)
+.++ +| ..|.+++|+| +...+++++.||+|+|||....+....+ .|.-.|.+++|+|...+|++|+.|..|++||.
T Consensus 173 k~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP 251 (464)
T ss_pred HHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC
Confidence 3444 44 5889999999 5688999999999999999988887777 68889999999999999999999999999998
Q ss_pred cCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEE
Q 010871 344 ESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRAS 423 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (498)
++.++... +..|+..|..+.|. +++++|+++|.|..+++||+++..+. .....+... ...+.
T Consensus 252 rSg~cl~t-------lh~HKntVl~~~f~-----~n~N~Llt~skD~~~kv~DiR~mkEl----~~~r~Hkkd--v~~~~ 313 (464)
T KOG0284|consen 252 RSGSCLAT-------LHGHKNTVLAVKFN-----PNGNWLLTGSKDQSCKVFDIRTMKEL----FTYRGHKKD--VTSLT 313 (464)
T ss_pred CCcchhhh-------hhhccceEEEEEEc-----CCCCeeEEccCCceEEEEehhHhHHH----HHhhcchhh--heeec
Confidence 87665443 36889999999988 99999999999999999999843211 111112222 23347
Q ss_pred EeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 424 FCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 424 ~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
|+|+ ...+|.+|+.||.|..|.+...+ .....-.+|...|++++|+|-|.+|++|+.|.++++|....+
T Consensus 314 WhP~----~~~lftsgg~Dgsvvh~~v~~~~-p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 314 WHPL----NESLFTSGGSDGSVVHWVVGLEE-PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred cccc----cccceeeccCCCceEEEeccccc-cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 8885 78899999999999999998422 223334689999999999999999999999999999987653
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.7e-35 Score=286.92 Aligned_cols=293 Identities=27% Similarity=0.471 Sum_probs=242.3
Q ss_pred eeeeecc-cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc--eeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 010871 180 HCIFDQC-KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK--VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVR 256 (498)
Q Consensus 180 ~~~~~~h-~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~ 256 (498)
...+.+| ...|.|+.|++ +|..|++++.|+.+++|+... .+ ..+.+.+|...|.+++|+|+++++++++.|++|+
T Consensus 151 ~~~~~~~~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~-~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEG-IKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eeeecccccCceEEEEEcC-CCCeEEEccCCCcEEEeeccc-ccchhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 3344444 88999999999 999999999999999999966 44 6777789999999999999999999999999999
Q ss_pred EEEC-CCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEc
Q 010871 257 VWEL-TKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 257 iwd~-~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~ 333 (498)
|||+ ..+.+++++.+|. .+.+++|+|++ +++++|+.|++|+|||+++++++..+ .|...|++++|++++.+|++++
T Consensus 229 iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred EeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence 9999 5668999999985 78899999987 99999999999999999999999999 5888999999999999999999
Q ss_pred CCCeEEEEEccCCcccccccccccccCCCcc--ceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEee
Q 010871 334 AQGCIYSISMESHSGALSRSHRHRTTGKRKC--PVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSL 411 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~ 411 (498)
.||.|++||+.......... ...+.. +++++.|+ |++.++++++.|+.+++||+...... ..
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~fs-----p~~~~ll~~~~d~~~~~w~l~~~~~~----~~-- 371 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKL-----LSGAENSAPVTSVQFS-----PNGKYLLSASLDRTLKLWDLRSGKSV----GT-- 371 (456)
T ss_pred CCccEEEEECCCCceeeeec-----ccCCCCCCceeEEEEC-----CCCcEEEEecCCCeEEEEEccCCcce----ee--
Confidence 99999999997655220011 122222 57777777 99999999999999999999854221 11
Q ss_pred ccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCC-CCCeEEEEEcCCCCEEEEEe--CCCe
Q 010871 412 KLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGH-RFPVVAVAWNHGENLLASSD--LYGI 488 (498)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~~--~Dg~ 488 (498)
...+.....+.+++.. .+.+.++++|+.|+.|++||+.+ ...+..+.+| ...+..++|+|..+++++++ .|+.
T Consensus 372 -~~~~~~~~~~~~~~~~-~~~~~~i~sg~~d~~v~~~~~~s--~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~ 447 (456)
T KOG0266|consen 372 -YTGHSNLVRCIFSPTL-STGGKLIYSGSEDGSVYVWDSSS--GGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGL 447 (456)
T ss_pred -ecccCCcceeEecccc-cCCCCeEEEEeCCceEEEEeCCc--cchhhhhcCCCCCceeccccCCCcCeeeecCcCCCce
Confidence 1111111122233222 45899999999999999999998 4468889999 89999999999999999998 7899
Q ss_pred EEEeecC
Q 010871 489 VIVWKRA 495 (498)
Q Consensus 489 i~iW~~~ 495 (498)
+++|..+
T Consensus 448 ~~~w~~~ 454 (456)
T KOG0266|consen 448 IRLWKYD 454 (456)
T ss_pred EEEecCC
Confidence 9999875
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-35 Score=258.06 Aligned_cols=285 Identities=16% Similarity=0.277 Sum_probs=237.8
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
.++.||.+-|.|+++.| ...++++|+.|++|+|||+.+ +.+..++.||-..|..+++++...||++++.|+.|+.||+
T Consensus 145 rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 46799999999999999 899999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 261 TKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 261 ~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
+..+.++.+.+| +.|.|+..+|. -..|++|+.|.+++|||+++...+..+ +|...|..+.+.|....+++|+.|++|
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTV 301 (460)
T ss_pred hhhhhHHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceE
Confidence 999999999988 68999999994 578999999999999999999999999 599999999999999999999999999
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCcee
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVH 418 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
++||+........ ...|+..+.++..+ |....|++++.| .|+-|++..+.. .. ....+...+.
T Consensus 302 rlWDl~agkt~~t-------lt~hkksvral~lh-----P~e~~fASas~d-nik~w~~p~g~f---~~-nlsgh~~iin 364 (460)
T KOG0285|consen 302 RLWDLRAGKTMIT-------LTHHKKSVRALCLH-----PKENLFASASPD-NIKQWKLPEGEF---LQ-NLSGHNAIIN 364 (460)
T ss_pred EEeeeccCceeEe-------eecccceeeEEecC-----CchhhhhccCCc-cceeccCCccch---hh-ccccccceee
Confidence 9999986554332 35677778888777 888889998887 689999874421 00 0111111222
Q ss_pred eeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeee-----cC---CCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 010871 419 SIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL-----QG---HRFPVVAVAWNHGENLLASSDLYGIVI 490 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~-----~~---h~~~V~~l~~sp~~~~l~s~~~Dg~i~ 490 (498)
.+ . . .+..++++|+++|.+.+||.+++.. .+.+ .| ....|.+.+|...|..|+||..|.+|+
T Consensus 365 tl--~-----~-nsD~v~~~G~dng~~~fwdwksg~n--yQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk 434 (460)
T KOG0285|consen 365 TL--S-----V-NSDGVLVSGGDNGSIMFWDWKSGHN--YQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIK 434 (460)
T ss_pred ee--e-----e-ccCceEEEcCCceEEEEEecCcCcc--cccccccccCCccccccceeEEeecccCceEEeccCCcceE
Confidence 22 1 1 1567889999999999999998641 2222 11 245799999999999999999999999
Q ss_pred EeecC
Q 010871 491 VWKRA 495 (498)
Q Consensus 491 iW~~~ 495 (498)
+|.-+
T Consensus 435 ~~keD 439 (460)
T KOG0285|consen 435 MYKED 439 (460)
T ss_pred EEecc
Confidence 99754
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-34 Score=243.23 Aligned_cols=255 Identities=17% Similarity=0.223 Sum_probs=207.3
Q ss_pred eeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCc
Q 010871 175 SFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKT 254 (498)
Q Consensus 175 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~ 254 (498)
.+-....+|+||...|..++.++ ++++.++++.|+++++||+.+ ++..+.|.||...|.+++|++|++.|++||.|.+
T Consensus 51 ~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkT 128 (315)
T KOG0279|consen 51 KYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKT 128 (315)
T ss_pred ccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecC-CcEEEEEEecCCceEEEEecCCCceeecCCCcce
Confidence 33335668999999999999999 999999999999999999998 6899999999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecC---CCeEEEEEEcCC-CcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEE
Q 010871 255 VRVWELTKGDCIRVIYGV---SSQLCIRFHPVN-NNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLL 329 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~---~~v~~i~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l 329 (498)
|++|++..+ +..++..+ .-|.|+.|+|.. ..+|++++.|++|++||+++.+....+ .|...++.++++|||.++
T Consensus 129 iklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 129 IKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred eeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEE
Confidence 999998754 44444433 357899999974 678999999999999999998888777 689999999999999999
Q ss_pred EEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccccccee---e
Q 010871 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYL---T 406 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~---~ 406 (498)
++|+.||.+.+||++...... ...+...|.++.|. |+..+|+.+. +..|+|||+.....-.. .
T Consensus 208 asGgkdg~~~LwdL~~~k~ly--------sl~a~~~v~sl~fs-----pnrywL~~at-~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNLY--------SLEAFDIVNSLCFS-----PNRYWLCAAT-ATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred ecCCCCceEEEEEccCCceeE--------eccCCCeEeeEEec-----CCceeEeecc-CCceEEEeccchhhhhhcccc
Confidence 999999999999998665432 25677788888886 7666555554 55699999986532110 0
Q ss_pred EeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 407 FRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
............++.++|++ +|..|++|-.|+.|++|.+.
T Consensus 274 ~~g~s~~~~~~~clslaws~-----dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 274 GIGPSSKAGDPICLSLAWSA-----DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccCCcEEEEEEEcC-----CCcEEEeeecCCcEEEEEee
Confidence 00111122345566667776 99999999999999999875
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.4e-34 Score=257.23 Aligned_cols=282 Identities=21% Similarity=0.316 Sum_probs=236.3
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIR 267 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 267 (498)
..|++++|+. +|.+||+|+.||.++||+.. +.+..+|..|.++|.+|.|+.+|+||++++.||++.+||..+|....
T Consensus 236 kdVT~L~Wn~-~G~~LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 236 KDVTSLDWNN-DGTLLATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred CCcceEEecC-CCCeEEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 5799999999 99999999999999999987 68888999999999999999999999999999999999999999999
Q ss_pred EEecCCCe-EEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 268 VIYGVSSQ-LCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 268 ~~~~~~~v-~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
.+..|+.+ ..+.|.. ..-+++++.|+.|+|+.+....++.++ .|.+.|.++.|+|.|.+|++++.|+++++|+...
T Consensus 313 ~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeeeccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 99988766 7899986 457888999999999999988888888 6899999999999999999999999999998753
Q ss_pred CcccccccccccccCCCccceeeEEEeEee---Ec-CCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeE
Q 010871 346 HSGALSRSHRHRTTGKRKCPVTTVQYRSFS---LL-AGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR 421 (498)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~s-~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (498)
.... ..+..|...|..+.|.+.. .. ..+..+++++.|++|++||+..+... .....+..++..
T Consensus 391 ~~~~-------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~f~kH~~pVys-- 457 (524)
T KOG0273|consen 391 SNSV-------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----HTLMKHQEPVYS-- 457 (524)
T ss_pred Ccch-------hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----EeeccCCCceEE--
Confidence 3221 1236788888888887321 11 13457999999999999999865221 111233333333
Q ss_pred EEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 422 ASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 422 ~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.+|+| +|+|+|+|+.||.|.+|+.++++ .++.+.+ .+.|..++|+.+|..|..+-.||.+++-|+.
T Consensus 458 vafS~-----~g~ylAsGs~dg~V~iws~~~~~--l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 458 VAFSP-----NGRYLASGSLDGCVHIWSTKTGK--LVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEecC-----CCcEEEecCCCCeeEeccccchh--eeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 36665 99999999999999999999954 5677765 5679999999999999999999999998875
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.7e-33 Score=261.52 Aligned_cols=284 Identities=27% Similarity=0.491 Sum_probs=236.5
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
..+.+|.++|++++|+| ++++|++++.||.|++|++.+ ......+..|...+..+.|++++++|++++.||.|++|++
T Consensus 3 ~~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 3 RTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred hHhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeC-CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 35679999999999999 899999999999999999987 6677788899999999999999999999999999999999
Q ss_pred CCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 261 TKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 261 ~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
.+++.+..+..+. .+.++.|+++ ..++++++.++.|.+||+.+++....+. +...+.+++|+|++.++++++.+|.|
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 9988888888775 7889999995 5788888779999999999888888775 77889999999999999999889999
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEee-ccCCce
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSL-KLAPRV 417 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~ 417 (498)
++||++....... ...|...+.++.+. ++++.+++++.|+.|++||+..... .... .....+
T Consensus 160 ~i~d~~~~~~~~~-------~~~~~~~i~~~~~~-----~~~~~l~~~~~~~~i~i~d~~~~~~-----~~~~~~~~~~i 222 (289)
T cd00200 160 KLWDLRTGKCVAT-------LTGHTGEVNSVAFS-----PDGEKLLSSSSDGTIKLWDLSTGKC-----LGTLRGHENGV 222 (289)
T ss_pred EEEEcccccccee-------EecCccccceEEEC-----CCcCEEEEecCCCcEEEEECCCCce-----ecchhhcCCce
Confidence 9999874332211 23566677777776 8998999999999999999975311 1111 111122
Q ss_pred eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 418 HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
....|++ ++.++++++.||.|++|++.++ .....+.+|...|.+++|+|++.+|++++.||.|++|+
T Consensus 223 --~~~~~~~-----~~~~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 223 --NSVAFSP-----DGYLLASGSEDGTIRVWDLRTG--ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred --EEEEEcC-----CCcEEEEEcCCCcEEEEEcCCc--eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 2234554 7888888888999999999874 35777889999999999999999999999999999996
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=258.92 Aligned_cols=271 Identities=21% Similarity=0.373 Sum_probs=224.7
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
..+|+|+.+ +...+++|..|.+|+|||..+ ..+.+.+.||++.|.|+.|. .+.|++||.|.+|++||+++|+++
T Consensus 197 skgVYClQY---DD~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 197 SKGVYCLQY---DDEKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred CCceEEEEe---cchhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence 568999999 668999999999999999998 88999999999999999995 569999999999999999999999
Q ss_pred EEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE---e-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q 010871 267 RVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK---L-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSI 341 (498)
Q Consensus 267 ~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~---~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~ 341 (498)
.++-+|. .|..+.|+. .++++++.|.++.+||+.....+.. + +|...|+.+.|+. +++++++.|.+|++|
T Consensus 271 ~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW 345 (499)
T ss_pred hHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEE
Confidence 9998884 788999964 6999999999999999987653322 2 5888999999864 599999999999999
Q ss_pred EccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeE
Q 010871 342 SMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR 421 (498)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (498)
++.+. ...+ ...+|+..|.|+++. ++++++|+.|.+|++||+..+... +....+..-+..++
T Consensus 346 ~~st~--efvR-----tl~gHkRGIAClQYr-------~rlvVSGSSDntIRlwdi~~G~cL----RvLeGHEeLvRciR 407 (499)
T KOG0281|consen 346 STSTC--EFVR-----TLNGHKRGIACLQYR-------DRLVVSGSSDNTIRLWDIECGACL----RVLEGHEELVRCIR 407 (499)
T ss_pred eccce--eeeh-----hhhcccccceehhcc-------CeEEEecCCCceEEEEeccccHHH----HHHhchHHhhhhee
Confidence 87643 3332 347899999999965 999999999999999999865321 11112223334443
Q ss_pred EEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCcc-------ceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 422 ASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHS-------CVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 422 ~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~-------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
+ |.+.|++|+.||+|+|||+..+... |+..+..|.+.|..+.|. ...+++++.|.+|.|||+
T Consensus 408 F---------d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 408 F---------DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDF 476 (499)
T ss_pred e---------cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence 3 7889999999999999999876543 677778899999999995 678999999999999998
Q ss_pred CCC
Q 010871 495 AKT 497 (498)
Q Consensus 495 ~~~ 497 (498)
..+
T Consensus 477 l~~ 479 (499)
T KOG0281|consen 477 LNG 479 (499)
T ss_pred CCC
Confidence 653
No 23
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=8.5e-33 Score=292.57 Aligned_cols=291 Identities=15% Similarity=0.286 Sum_probs=226.8
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC---C----ceeEEeecCCCCeEEEEEcc-CCCEEEEEeCCCc
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP---P----KVIKLLNGHSKDVTDFDFSS-NNQYIASSSMDKT 254 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~---~----~~~~~~~~h~~~V~~l~~s~-~~~~l~s~s~dg~ 254 (498)
+.+|.+.|++++|+| ++++||+|+.|+.|+||+.... . .....+. +...|.+++|++ ++.+|++++.||+
T Consensus 479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 456899999999999 9999999999999999997531 1 1222333 456899999987 4689999999999
Q ss_pred EEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEc-CCCCEEEEE
Q 010871 255 VRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHD-HTGQLLFCG 332 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~~~ 332 (498)
|++||+.+++.+..+.+|. .|.+++|+|.++.+|++|+.||.|++||++++..+..+.....+.++.|+ +++.+|++|
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 9999999999999998885 68899999877789999999999999999999998888777889999995 568999999
Q ss_pred cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccce--eeEeEe
Q 010871 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGY--LTFRCS 410 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~--~~~~~~ 410 (498)
+.||.|++||++...... ....+|...|.++.| .++.+|++++.|+.|++||+....... ......
T Consensus 637 s~dg~I~iwD~~~~~~~~------~~~~~h~~~V~~v~f------~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~ 704 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPL------CTMIGHSKTVSYVRF------VDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF 704 (793)
T ss_pred eCCCeEEEEECCCCCccc------eEecCCCCCEEEEEE------eCCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence 999999999987543211 123578888998888 367899999999999999997432110 011111
Q ss_pred eccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCcccee-----------eecCCCCCeEEEEEcCCCCE
Q 010871 411 LKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVN-----------KLQGHRFPVVAVAWNHGENL 479 (498)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~-----------~~~~h~~~V~~l~~sp~~~~ 479 (498)
..+...+. ...|++ ++.+|++|+.|+.|++|+.......... ....|...|.+++|+|++..
T Consensus 705 ~gh~~~i~--~v~~s~-----~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 705 MGHTNVKN--FVGLSV-----SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred cCCCCCee--EEEEcC-----CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 11111112 124554 8999999999999999998754211111 12335567999999999999
Q ss_pred EEEEeCCCeEEEeec
Q 010871 480 LASSDLYGIVIVWKR 494 (498)
Q Consensus 480 l~s~~~Dg~i~iW~~ 494 (498)
|++|+.||.|+||++
T Consensus 778 lva~~~dG~I~i~~~ 792 (793)
T PLN00181 778 LVAANSTGNIKILEM 792 (793)
T ss_pred EEEecCCCcEEEEec
Confidence 999999999999986
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.3e-34 Score=256.19 Aligned_cols=292 Identities=20% Similarity=0.350 Sum_probs=230.6
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC-Ccee--EEee------c----CCCCeEEEEEccCCCEEEEE
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP-PKVI--KLLN------G----HSKDVTDFDFSSNNQYIASS 249 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~-~~~~--~~~~------~----h~~~V~~l~~s~~~~~l~s~ 249 (498)
..+|+.+|.+++|+|....+|++|+.|-..++|++... .... ..|+ + ....|++|+|+.+|..|++|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 34499999999999965569999999999999998741 1110 0111 1 23679999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCe-EEEEEcCCCC
Q 010871 250 SMDKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEV-TSMDHDHTGQ 327 (498)
Q Consensus 250 s~dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i-~~l~~~~~~~ 327 (498)
+.||.++||+.. |..+.++..| .+|.++.|+.. +.+|++++.|+++.+||..+++....+...... ..+.|-. ..
T Consensus 254 ~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~ 330 (524)
T KOG0273|consen 254 SEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-ND 330 (524)
T ss_pred ecCcEEEEEecC-chhhhhhhccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-Cc
Confidence 999999999965 6666777666 58899999984 589999999999999999999999988744444 7788854 46
Q ss_pred EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeE
Q 010871 328 LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTF 407 (498)
Q Consensus 328 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 407 (498)
.|++.+.||.|+++.+...... ..+.+|.++|.++.|. |.+.+|++++.|++++||....... .
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P~-------~t~~GH~g~V~alk~n-----~tg~LLaS~SdD~TlkiWs~~~~~~----~ 394 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRPV-------KTFIGHHGEVNALKWN-----PTGSLLASCSDDGTLKIWSMGQSNS----V 394 (524)
T ss_pred eEeecCCCceEEEEEecCCCcc-------eeeecccCceEEEEEC-----CCCceEEEecCCCeeEeeecCCCcc----h
Confidence 7999999999999988654433 2346799999999998 9999999999999999999764311 1
Q ss_pred eEeeccCCceeeeEEEEeeeee---c-cCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEE
Q 010871 408 RCSLKLAPRVHSIRASFCPLLS---L-EKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASS 483 (498)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~ 483 (498)
.....+...+..+ .|+|.-. . ..+..+++++.|++|++||+.. +.++..|..|..+|++|+|+|+|++||+|
T Consensus 395 ~~l~~Hskei~t~--~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--gv~i~~f~kH~~pVysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 395 HDLQAHSKEIYTI--KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--GVPIHTLMKHQEPVYSVAFSPNGRYLASG 470 (524)
T ss_pred hhhhhhccceeeE--eecCCCCccCCCcCCceEEEeecCCeEEEEEccC--CceeEeeccCCCceEEEEecCCCcEEEec
Confidence 1111222222222 4444211 1 2567899999999999999999 45799999999999999999999999999
Q ss_pred eCCCeEEEeecCCC
Q 010871 484 DLYGIVIVWKRAKT 497 (498)
Q Consensus 484 ~~Dg~i~iW~~~~~ 497 (498)
+.||.|.+|+..++
T Consensus 471 s~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 471 SLDGCVHIWSTKTG 484 (524)
T ss_pred CCCCeeEeccccch
Confidence 99999999998764
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.7e-33 Score=263.87 Aligned_cols=283 Identities=17% Similarity=0.336 Sum_probs=234.4
Q ss_pred cccEEEEEEecCCCCEEEEEeCC-CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASD-GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDC 265 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~d-g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 265 (498)
..+|..++|+. .|++||.|+.. |.+.||+..+ ..-+...++|...+++++++|||+++++|+.||.|+|||..+|-|
T Consensus 307 ~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqs-EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 307 DQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQS-ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred cceeeEEEecc-cCCEEEEcCCccceEEEEEeec-cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence 45899999998 99999999875 8999999998 677788899999999999999999999999999999999999999
Q ss_pred EEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCC--CeEEEEEcCCCCEEEEEcCCC-eEEEE
Q 010871 266 IRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDS--EVTSMDHDHTGQLLFCGDAQG-CIYSI 341 (498)
Q Consensus 266 ~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~l~~~~~dg-~i~i~ 341 (498)
+.++..|. .+..+.|+. .++.+++.+.||+|+.||+...+..+++..+. ...|++.+|.|.++.+|+.|. .|++|
T Consensus 385 ~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvW 463 (893)
T KOG0291|consen 385 FVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVW 463 (893)
T ss_pred EEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEE
Confidence 99999885 788999998 55889999999999999999999999996554 467889999999999999887 59999
Q ss_pred EccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeE
Q 010871 342 SMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR 421 (498)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (498)
++.+... . ..+.+|.+||.++.|. |.+..|+++++|.+|++||+-....... .+......+.
T Consensus 464 S~qTGql--l-----DiLsGHEgPVs~l~f~-----~~~~~LaS~SWDkTVRiW~if~s~~~vE------tl~i~sdvl~ 525 (893)
T KOG0291|consen 464 SVQTGQL--L-----DILSGHEGPVSGLSFS-----PDGSLLASGSWDKTVRIWDIFSSSGTVE------TLEIRSDVLA 525 (893)
T ss_pred EeecCee--e-----ehhcCCCCcceeeEEc-----cccCeEEeccccceEEEEEeeccCceee------eEeeccceeE
Confidence 8865432 2 2248999999999887 9999999999999999999864321111 1112223344
Q ss_pred EEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeee--------------------cCCCCCeEEEEEcCCCCEEE
Q 010871 422 ASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL--------------------QGHRFPVVAVAWNHGENLLA 481 (498)
Q Consensus 422 ~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~--------------------~~h~~~V~~l~~sp~~~~l~ 481 (498)
..|.| +|+-|+++..||.|.+||...+.. +..+ .......+.+++++||..|+
T Consensus 526 vsfrP-----dG~elaVaTldgqItf~d~~~~~q--~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~Il 598 (893)
T KOG0291|consen 526 VSFRP-----DGKELAVATLDGQITFFDIKEAVQ--VGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCIL 598 (893)
T ss_pred EEEcC-----CCCeEEEEEecceEEEEEhhhcee--eccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEE
Confidence 46666 999999999999999999976431 1111 11235689999999999999
Q ss_pred EEeCCCeEEEeecCCC
Q 010871 482 SSDLYGIVIVWKRAKT 497 (498)
Q Consensus 482 s~~~Dg~i~iW~~~~~ 497 (498)
+||....|++|++.++
T Consensus 599 AgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 599 AGGESNSICIYDVPEG 614 (893)
T ss_pred ecCCcccEEEEECchh
Confidence 9999999999998764
No 26
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-33 Score=234.61 Aligned_cols=290 Identities=18% Similarity=0.238 Sum_probs=228.6
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 261 (498)
.+.||+.+++.|.++. +|++|.+++.|.++.||-..+ ++.+.++.||++.|+|++...+.++|++|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecC-CCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 4689999999999999 999999999999999998877 89999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCeEEEEEEcCCCcEEEEE----eCCCcEEEEEcC-------CCcEEEEe-ecCCCeEEEEEcCCCCEE
Q 010871 262 KGDCIRVIYGVSSQLCIRFHPVNNNFLSVG----NANKEITVFNFS-------TGRIIKKL-VVDSEVTSMDHDHTGQLL 329 (498)
Q Consensus 262 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g----~~dg~i~iwd~~-------~~~~~~~~-~~~~~i~~l~~~~~~~~l 329 (498)
+|+++.+++....+..+.|+..+...+++. +..+.|.++|++ ..++..++ .+.+.++.+-|.|-++.|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 999999999999999999999654444433 234789999998 34445555 467899999999999999
Q ss_pred EEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeE
Q 010871 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRC 409 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 409 (498)
++|.++|.|..||.+....... ....|...|+.++++ ++..++++++.|.+-++||+.+- ....
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~------s~~~h~~~Ind~q~s-----~d~T~FiT~s~Dttakl~D~~tl-----~v~K 226 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVD------SDEEHSSKINDLQFS-----RDRTYFITGSKDTTAKLVDVRTL-----EVLK 226 (327)
T ss_pred EEecCCCcEEEEEcccCceeee------chhhhcccccccccc-----CCcceEEecccCccceeeeccce-----eeEE
Confidence 9999999999999976433222 125677788888877 99999999999999999999842 1122
Q ss_pred eeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCc--EEEEECCCCC----------ccceeeecCCCCCeEEEEEcCCC
Q 010871 410 SLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSN--VYFYDLAKPK----------HSCVNKLQGHRFPVVAVAWNHGE 477 (498)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~--I~iwd~~~~~----------~~~~~~~~~h~~~V~~l~~sp~~ 477 (498)
......+++ .++++| -..+++.|+.... |.-=+.+.++ .+.+..+++|-++|++|+|||+|
T Consensus 227 ty~te~PvN--~aaisP-----~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 227 TYTTERPVN--TAAISP-----LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred Eeeeccccc--ceeccc-----ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence 222222222 235565 5556666554322 1111112221 13456778999999999999999
Q ss_pred CEEEEEeCCCeEEEeecCC
Q 010871 478 NLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 478 ~~l~s~~~Dg~i~iW~~~~ 496 (498)
+..++|+.||.|++.-++.
T Consensus 300 ksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 300 KSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccCCCCceEEEEEecc
Confidence 9999999999999976553
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.1e-34 Score=275.27 Aligned_cols=241 Identities=23% Similarity=0.422 Sum_probs=207.4
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCC------------------------------CCceeEEeecCCCCeEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD------------------------------PPKVIKLLNGHSKDVTD 236 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~------------------------------~~~~~~~~~~h~~~V~~ 236 (498)
...++|+.|++ ++.+||.|-.|..|++|.+.. .....+++.||.++|..
T Consensus 378 ~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 378 YQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred CCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 45799999999 888999999999999999872 01234568899999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecC
Q 010871 237 FDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVD 314 (498)
Q Consensus 237 l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~ 314 (498)
+.|+|+.++|+++|.|++||+|.+.+..++..+.+|. +|..+.|+| .+.++++++.|++.++|......+++.+ .|.
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifaghl 535 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHL 535 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhcccc
Confidence 9999999999999999999999999999999999995 788999999 5689999999999999999999998888 688
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEE
Q 010871 315 SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSF 394 (498)
Q Consensus 315 ~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~i 394 (498)
+.|.|+.|+|+..++++|+.|.+|++||+...... +.+.+|+++|.++
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-------RiF~GH~~~V~al------------------------- 583 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-------RIFTGHKGPVTAL------------------------- 583 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcEE-------EEecCCCCceEEE-------------------------
Confidence 99999999999999999999999999998532211 1123333333333
Q ss_pred EEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEc
Q 010871 395 FSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWN 474 (498)
Q Consensus 395 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s 474 (498)
.|+| +|++|++|+.||.|.+||+.++. .+..+.+|.+.|.+|.|+
T Consensus 584 ----------------------------~~Sp-----~Gr~LaSg~ed~~I~iWDl~~~~--~v~~l~~Ht~ti~SlsFS 628 (707)
T KOG0263|consen 584 ----------------------------AFSP-----CGRYLASGDEDGLIKIWDLANGS--LVKQLKGHTGTIYSLSFS 628 (707)
T ss_pred ----------------------------EEcC-----CCceEeecccCCcEEEEEcCCCc--chhhhhcccCceeEEEEe
Confidence 4444 88999999999999999999854 688999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEeecCC
Q 010871 475 HGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 475 p~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.+|..||+||.|.+|++||+.+
T Consensus 629 ~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 629 RDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999875
No 28
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-33 Score=231.13 Aligned_cols=282 Identities=20% Similarity=0.298 Sum_probs=233.7
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
.++++|+++|.++.|+- +|+|.++++.|.+|++|+... +.+++++.+|...|..++.+.|+..|++|+.|+.|.+||+
T Consensus 11 ~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~r-g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLR-GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred eeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccc-cceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 36789999999999999 999999999999999999988 8999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC--cEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCC
Q 010871 261 TKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTG--RIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQG 336 (498)
Q Consensus 261 ~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg 336 (498)
++|+.++.+.+|. .+..+.|+. ....+++|+.|..+++||.++. ++++.+ .....|.++.+. +..|++|+.||
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred ccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence 9999999999995 678999987 5689999999999999999764 566666 466788888875 46799999999
Q ss_pred eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCc
Q 010871 337 CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPR 416 (498)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 416 (498)
+++.||++..+... .-...||+++.|+ ++++..++++.|++|++.|-.++... .....+...
T Consensus 166 tvRtydiR~G~l~s---------Dy~g~pit~vs~s-----~d~nc~La~~l~stlrLlDk~tGklL----~sYkGhkn~ 227 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSS---------DYFGHPITSVSFS-----KDGNCSLASSLDSTLRLLDKETGKLL----KSYKGHKNM 227 (307)
T ss_pred cEEEEEeecceeeh---------hhcCCcceeEEec-----CCCCEEEEeeccceeeecccchhHHH----HHhcccccc
Confidence 99999998654322 2345678988887 99999999999999999998765321 111112233
Q ss_pred eeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCC-eEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 417 VHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFP-VVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
-..+.+++.. ...++++|++||.|++||+.... .+..+..|... |.+++++|.-.-|+++. ++.+..|.
T Consensus 228 eykldc~l~q-----sdthV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 228 EYKLDCCLNQ-----SDTHVFSGSEDGKVYFWDLVDET--QISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred eeeeeeeecc-----cceeEEeccCCceEEEEEeccce--eeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 3344455554 67899999999999999999854 57788888777 89999999887777775 45566664
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.5e-32 Score=256.38 Aligned_cols=383 Identities=20% Similarity=0.232 Sum_probs=286.2
Q ss_pred hhhhhhhccccccccceeeeeeecCceeeE-EeeeeecccCCCCCCCCCCCCCCCCC-cccc---CCCCC--Cccccccc
Q 010871 63 GVRRLLLFRKAESGVRRRLDWRCNGKGYVA-YRNYIRRPRNWESQTPSYQSTPGNSG-RWLP---SSSPL--SLLYEVDS 135 (498)
Q Consensus 63 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~p~~~~-~~~p---~~~~~--~~~~~~~~ 135 (498)
.++|.++.+=.-+....-++|..|++.++. ..+.+..|+. |+... .|+| +..++ +.+.....
T Consensus 84 ~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~-----------P~~~~~~~~pFvl~r~~~g~fddi~si~ 152 (893)
T KOG0291|consen 84 LLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHA-----------PGEIKNEFNPFVLHRTYLGHFDDITSID 152 (893)
T ss_pred cccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEec-----------CcchhcccCcceEeeeecCCccceeEEE
Confidence 377888877777777789999999988766 5558888873 22222 2333 23332 22334445
Q ss_pred ccccccccCCCCCCCceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEE
Q 010871 136 WSSSRDLRSGNLASSHRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVC 215 (498)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iw 215 (498)
|.....+ ......+-..+++..... ..+ ..+.|.||++.|.++-|.. +..-+.+.+.||.+.+|
T Consensus 153 Ws~DSr~-----------l~~gsrD~s~rl~~v~~~--k~~--~~~~l~gHkd~VvacfF~~-~~~~l~tvskdG~l~~W 216 (893)
T KOG0291|consen 153 WSDDSRL-----------LVTGSRDLSARLFGVDGN--KNL--FTYALNGHKDYVVACFFGA-NSLDLYTVSKDGALFVW 216 (893)
T ss_pred eccCCce-----------EEeccccceEEEEEeccc--ccc--ceEeccCCCcceEEEEecc-CcceEEEEecCceEEEE
Confidence 6544333 222222323333221111 111 2457899999999999998 88889999999999999
Q ss_pred EcCCC-----------------------Cc-----e-----eEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 010871 216 TVSDP-----------------------PK-----V-----IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK 262 (498)
Q Consensus 216 d~~~~-----------------------~~-----~-----~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 262 (498)
..... .+ . ..-+......|++.+|++....|++|-..|...++.+..
T Consensus 217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~ 296 (893)
T KOG0291|consen 217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD 296 (893)
T ss_pred EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC
Confidence 88710 11 0 111223347899999999999999999999999999999
Q ss_pred CcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q 010871 263 GDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYS 340 (498)
Q Consensus 263 ~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i 340 (498)
..+++.+.-. .++..+.|+..|.-+.+.++.-|++.||+..+..-+.+. .|...+++++++|||+++++|++||.|++
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 9999999866 588899999866544444455689999999988877666 58899999999999999999999999999
Q ss_pred EEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeee
Q 010871 341 ISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSI 420 (498)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
||.....+... +..|.+.|+.+.|+ ..|+.+++.+.||+|+.||+... ++...+.. .-
T Consensus 377 Wn~~SgfC~vT-------FteHts~Vt~v~f~-----~~g~~llssSLDGtVRAwDlkRY-------rNfRTft~---P~ 434 (893)
T KOG0291|consen 377 WNTQSGFCFVT-------FTEHTSGVTAVQFT-----ARGNVLLSSSLDGTVRAWDLKRY-------RNFRTFTS---PE 434 (893)
T ss_pred EeccCceEEEE-------eccCCCceEEEEEE-----ecCCEEEEeecCCeEEeeeeccc-------ceeeeecC---CC
Confidence 99865444332 47899999999998 89999999999999999999743 11111111 11
Q ss_pred EEEEeeeeeccCCCEEEEEeCCC-cEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 421 RASFCPLLSLEKGEYIVAGSEDS-NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~gs~dg-~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
...|++++..+.|.++++|+.|. .|++|++++|+ .+..+.||.++|.+++|+|++..|++++.|.+|++|++=.
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq--llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ--LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe--eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 22566667767899999999986 69999999965 6888999999999999999999999999999999999743
No 30
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.7e-33 Score=236.03 Aligned_cols=275 Identities=17% Similarity=0.261 Sum_probs=225.6
Q ss_pred CCCCCceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC--C--
Q 010871 146 NLASSHRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP--P-- 221 (498)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~--~-- 221 (498)
....+.+..+++++++.+-+|..+.......+.+. ..-|..++|+| +++++|+|+-|+...||++.+. .
T Consensus 62 ~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~------s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~ 134 (343)
T KOG0286|consen 62 DWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP------SSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGN 134 (343)
T ss_pred EecCCcCeEEeeccCCeEEEEEcccccceeEEecC------ceeEEEEEECC-CCCeEEecCcCceeEEEeccccccccc
Confidence 33445666777788888888877766555555444 56799999999 9999999999999999999853 1
Q ss_pred -ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEE
Q 010871 222 -KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITV 299 (498)
Q Consensus 222 -~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~i 299 (498)
...+.+.+|.+-+.|+.|.+|+ +|+|+|.|.++.+||+++++.+..+.+|. .|.++.+.|.+.+.+++|+.|+..++
T Consensus 135 ~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~akl 213 (343)
T KOG0286|consen 135 VRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKL 213 (343)
T ss_pred ceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceee
Confidence 4567799999999999999855 89999999999999999999999999995 89999999988899999999999999
Q ss_pred EEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC
Q 010871 300 FNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA 378 (498)
Q Consensus 300 wd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~ 378 (498)
||++.+.+++.| .|...|++++|.|+|.-|++|+.|++.++||++.......... .....+|+++.|+ .
T Consensus 214 WD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~-----~~~~~gitSv~FS-----~ 283 (343)
T KOG0286|consen 214 WDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH-----DSIICGITSVAFS-----K 283 (343)
T ss_pred eeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc-----CcccCCceeEEEc-----c
Confidence 999999999999 6999999999999999999999999999999987655444332 4455678888876 8
Q ss_pred CCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEE
Q 010871 379 GGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYD 449 (498)
Q Consensus 379 ~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd 449 (498)
.|++|++|..|..+.+||.-.+.. ......+...+ +.+..+|||.-+++|+.|..++||.
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~----vg~L~GHeNRv-------Scl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGER----VGVLAGHENRV-------SCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccEEEeeecCCceeEeeccccce----EEEeeccCCee-------EEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999764311 11111223333 3333345999999999999999994
No 31
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-32 Score=251.54 Aligned_cols=434 Identities=18% Similarity=0.232 Sum_probs=290.7
Q ss_pred ccCcccccCCccCCCCCCCCCCCCccCCCCCCCccceEeeecCCCCCCCcchHhhhhhhhccccccccceeeeeeecCce
Q 010871 10 STSPIEANNDNISDNNNNHKDNKNKENKENVIDPELFSCMLQPATADSDPDYIGVRRLLLFRKAESGVRRRLDWRCNGKG 89 (498)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 89 (498)
.-+|||+.+|.|+...++||...-|+-|+.++.+ +.|..+.+|++-+-+.+-....+..-..+-+.
T Consensus 202 d~dpYeP~~d~Fs~~~~~~Pi~~~PepKrrFiPS--------------k~Eakrv~rmv~Air~Gwik~~~r~kee~~~~ 267 (733)
T KOG0650|consen 202 DFDPYEPLVDWFSRDVEIHPISNRPEPKRRFIPS--------------KTEAKRVSRMVHAIRKGWIKTDPREKEENYKF 267 (733)
T ss_pred CCCccchHHHHhcccccccccccCCCcccccCCc--------------HHHHHHHHHHHHHHHhccccCCccccccCccc
Confidence 3579999999999999999999888888887765 44555656654222222221100000001122
Q ss_pred eeEEe----eeeecccCCCCCCCCCCCCCCCCCccccCCCCCCcccccccccccccccCCCCCCCceeeeeecCCCCCCC
Q 010871 90 YVAYR----NYIRRPRNWESQTPSYQSTPGNSGRWLPSSSPLSLLYEVDSWSSSRDLRSGNLASSHRTSFSSTASDSDQP 165 (498)
Q Consensus 90 ~~~~~----~~i~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (498)
|+-+. .....+..+..++| ..++|++.++|+||++|++...+...|...++. ++...|.+++...+|.
T Consensus 268 ydLW~~dd~~e~l~r~~~~~paP-Kl~lP~heESYNPP~EYL~~~eE~~~we~~E~~-------~R~l~F~P~ky~sLR~ 339 (733)
T KOG0650|consen 268 YDLWADDDTGEQLDRHLDLVPAP-KLALPGHEESYNPPEEYLFDEEEKKAWEEAEPE-------DRKLNFIPQKYKSLRK 339 (733)
T ss_pred cceeccCCchhhhhcccccCCcc-ccCCCCcccccCCchhhccCHHHhhhhhhcccc-------ccccccccccchhhhc
Confidence 22222 11111111334444 678999999999999999999999999966644 5556666655555442
Q ss_pred c--------------------------cCCCCCcce------------e-ecceeeeecccccEEEEEEecCCCCEEEEE
Q 010871 166 R--------------------------RQGPEPAYS------------F-VGMHCIFDQCKAAVTILKFGHMSSDLLAYG 206 (498)
Q Consensus 166 ~--------------------------~~~~~~~~~------------~-~~~~~~~~~h~~~V~~v~~sp~~~~~lasg 206 (498)
. ++...|... | ......|.||++.|.||...| .|.+||+|
T Consensus 340 VPaY~r~irErFeRcLDLYL~PR~rK~rlniDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp-~G~wlasG 418 (733)
T KOG0650|consen 340 VPAYERSIRERFERCLDLYLAPRVRKMRLNIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDP-SGEWLASG 418 (733)
T ss_pred chhHHHHHHHHHHHhHHhhhCcccccceecCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecC-Ccceeeec
Confidence 2 000110000 0 112346899999999999999 99999999
Q ss_pred eCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCC--EEEEEeCCCcEEEEECCCCc--------------------
Q 010871 207 ASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQ--YIASSSMDKTVRVWELTKGD-------------------- 264 (498)
Q Consensus 207 ~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~--~l~s~s~dg~v~iwd~~~~~-------------------- 264 (498)
+.||+|+||.+.+ +.+++.+. -.+.|.|++|+|.+. .|+++ .+..+.|-+..-|.
T Consensus 419 sdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p 495 (733)
T KOG0650|consen 419 SDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNPIFGDRLEVGPTKELLASAPNESEP 495 (733)
T ss_pred CCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCceEEeCccccchhhhcchhhhhhcCCCccCC
Confidence 9999999999999 78888776 346899999999764 34433 23334443322110
Q ss_pred ------------------EEEEEecCCCeEEEEEEcCCCcEEEEEeC---CCcEEEEEcCCCcEEEEe-ecCCCeEEEEE
Q 010871 265 ------------------CIRVIYGVSSQLCIRFHPVNNNFLSVGNA---NKEITVFNFSTGRIIKKL-VVDSEVTSMDH 322 (498)
Q Consensus 265 ------------------~~~~~~~~~~v~~i~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~ 322 (498)
.-..+.+...+..+.|+..| .+|++... ...|.|+++...+...-| ...+.|.++.|
T Consensus 496 ~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~F 574 (733)
T KOG0650|consen 496 DAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKF 574 (733)
T ss_pred cccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEe
Confidence 11234455677889999965 56655433 356889999877776666 46788999999
Q ss_pred cCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccccc
Q 010871 323 DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQ 402 (498)
Q Consensus 323 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~ 402 (498)
+|...+|++++ ...|++||+... .+.... ......|. .++++|.|..|+.++.|+.+..||+.....
T Consensus 575 HPs~p~lfVaT-q~~vRiYdL~kq--elvKkL-----~tg~kwiS-----~msihp~GDnli~gs~d~k~~WfDldlssk 641 (733)
T KOG0650|consen 575 HPSKPYLFVAT-QRSVRIYDLSKQ--ELVKKL-----LTGSKWIS-----SMSIHPNGDNLILGSYDKKMCWFDLDLSSK 641 (733)
T ss_pred cCCCceEEEEe-ccceEEEehhHH--HHHHHH-----hcCCeeee-----eeeecCCCCeEEEecCCCeeEEEEcccCcc
Confidence 99999888887 467999998642 121111 11122233 445559999999999999999999986654
Q ss_pred ceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEEC-------CCCCccceeeecCCCCC----eEEE
Q 010871 403 GYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDL-------AKPKHSCVNKLQGHRFP----VVAV 471 (498)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~-------~~~~~~~~~~~~~h~~~----V~~l 471 (498)
.+..++.. ...+..+ +|++ .-.++++|+.||++.||.- +++...++..+++|... |.++
T Consensus 642 Pyk~lr~H---~~avr~V--a~H~-----ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~ 711 (733)
T KOG0650|consen 642 PYKTLRLH---EKAVRSV--AFHK-----RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT 711 (733)
T ss_pred hhHHhhhh---hhhhhhh--hhcc-----ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee
Confidence 44333222 2222222 4444 7788999999999999863 23334567888999765 9999
Q ss_pred EEcCCCCEEEEEeCCCeEEEee
Q 010871 472 AWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 472 ~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
.|||...+|+++|.||+|++|.
T Consensus 712 ~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 712 IWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred cccCCCceEEecCCCceEEeeC
Confidence 9999999999999999999993
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6e-33 Score=266.52 Aligned_cols=205 Identities=20% Similarity=0.382 Sum_probs=189.8
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
...+.||.++|..+.|+| +.++|++++.|++|++|.+.+ ...+-.++||..+|.++.|+|.|-|+||+|.|++.++|.
T Consensus 444 ~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred eEEeecCCCceeeeeecc-cccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 345899999999999999 999999999999999999998 788888999999999999999999999999999999999
Q ss_pred CCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCe
Q 010871 260 LTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGC 337 (498)
Q Consensus 260 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~ 337 (498)
......++.+.+| ..+-|+.|+| +.+++++|+.|.+|++||+.+|..++.| +|.++|.+++|+|+|++|++|+.||.
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred cccCCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence 9999999999998 5888999999 6799999999999999999999999999 69999999999999999999999999
Q ss_pred EEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 338 IYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
|.+||+........ +.+|.+.|.++.|+ .+|..|++|+.|.+|++||+..
T Consensus 601 I~iWDl~~~~~v~~-------l~~Ht~ti~SlsFS-----~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 601 IKIWDLANGSLVKQ-------LKGHTGTIYSLSFS-----RDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEEcCCCcchhh-------hhcccCceeEEEEe-----cCCCEEEecCCCCeEEEEEchh
Confidence 99999976443322 36789999999887 9999999999999999999874
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=261.76 Aligned_cols=309 Identities=20% Similarity=0.250 Sum_probs=236.0
Q ss_pred ceeeeecccccEEEEEEecCCC-CEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 010871 179 MHCIFDQCKAAVTILKFGHMSS-DLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRV 257 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~-~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~i 257 (498)
+.+.|.||.+.|.++.|+|+-. .+|++|+.|+++++||+.+...++..+..|...|++++|++|+..++++|.|..+.|
T Consensus 139 ~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 139 CTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIV 218 (775)
T ss_pred EEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEE
Confidence 3457999999999999999433 368999999999999999756668888999999999999999999999999999999
Q ss_pred EECCCCcEEEEEec------------------------------------------------------------------
Q 010871 258 WELTKGDCIRVIYG------------------------------------------------------------------ 271 (498)
Q Consensus 258 wd~~~~~~~~~~~~------------------------------------------------------------------ 271 (498)
||+.+.++.+++..
T Consensus 219 wd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL 298 (775)
T ss_pred eehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence 99865443222211
Q ss_pred ------------------------CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCC
Q 010871 272 ------------------------VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQ 327 (498)
Q Consensus 272 ------------------------~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~ 327 (498)
+..|..++|.-...+++++++..+.+++|++.+..+....+|...|.++....+|.
T Consensus 299 vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 299 VTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGD 378 (775)
T ss_pred EEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCc
Confidence 22344555555555677777777777777777766664457889999999777889
Q ss_pred EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeE
Q 010871 328 LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTF 407 (498)
Q Consensus 328 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 407 (498)
+|++|+.|.++++|.++........ .....+|...|.++.+.. -...+|+++|.|++|++|++.........
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~---~a~~~gH~~svgava~~~----~~asffvsvS~D~tlK~W~l~~s~~~~~~- 450 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLC---VAQANGHTNSVGAVAGSK----LGASFFVSVSQDCTLKLWDLPKSKETAFP- 450 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhh---hhhhcccccccceeeecc----cCccEEEEecCCceEEEecCCCccccccc-
Confidence 9999999999999988544433322 223478999999998853 34578999999999999999863222111
Q ss_pred eEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 010871 408 RCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYG 487 (498)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg 487 (498)
...........+.-...++..+|+..+||+||.|.+.+||++.. ......+.||...|.+|.|+|..+.|+|+|.|+
T Consensus 451 -~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~--~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~ 527 (775)
T KOG0319|consen 451 -IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ--LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK 527 (775)
T ss_pred -ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC--ceEEEEeeCCccceEEEEeccccceeEeccCCc
Confidence 11111111111222344455556999999999999999999996 567899999999999999999999999999999
Q ss_pred eEEEeecCCCC
Q 010871 488 IVIVWKRAKTS 498 (498)
Q Consensus 488 ~i~iW~~~~~s 498 (498)
+|+||.+++.+
T Consensus 528 TvKIW~is~fS 538 (775)
T KOG0319|consen 528 TVKIWSISTFS 538 (775)
T ss_pred eEEEEEeccce
Confidence 99999998753
No 34
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9e-33 Score=267.51 Aligned_cols=251 Identities=25% Similarity=0.395 Sum_probs=205.7
Q ss_pred ecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCC--------------------------------C-----------
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD--------------------------------P----------- 220 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~--------------------------------~----------- 220 (498)
.+|+++|+++.||+ +|+|||+||.||.|+||.+.. .
T Consensus 264 ~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred cccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 38999999999999 999999999999999998754 0
Q ss_pred ----------------CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCC
Q 010871 221 ----------------PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVN 284 (498)
Q Consensus 221 ----------------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~ 284 (498)
.+++..|.||.+.|..|.|+.++ +|+++|.|.+||+|++....|++.|.+..-|+|++|+|.+
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVD 421 (712)
T ss_pred cCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccC
Confidence 12556788999999999999765 9999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccccccccc--ccCCC
Q 010871 285 NNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHR--TTGKR 362 (498)
Q Consensus 285 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~ 362 (498)
.+++++|+-||.|+||++...+.+.......-|++++|.|+|+..++|+-+|.+++|+............... ....+
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 9999999999999999999988888888889999999999999999999999999998876543332211111 11223
Q ss_pred ccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeec-cCCceeeeEEEEeeeeeccCCCEEEEEeC
Q 010871 363 KCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLK-LAPRVHSIRASFCPLLSLEKGEYIVAGSE 441 (498)
Q Consensus 363 ~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~gs~ 441 (498)
. .|+++++.+. +...+++.+.|..|+|||.+.. .+.+.++ +......+.+.|+. ||++|++|++
T Consensus 502 ~-rITG~Q~~p~----~~~~vLVTSnDSrIRI~d~~~~-----~lv~KfKG~~n~~SQ~~Asfs~-----Dgk~IVs~se 566 (712)
T KOG0283|consen 502 K-RITGLQFFPG----DPDEVLVTSNDSRIRIYDGRDK-----DLVHKFKGFRNTSSQISASFSS-----DGKHIVSASE 566 (712)
T ss_pred c-eeeeeEecCC----CCCeEEEecCCCceEEEeccch-----hhhhhhcccccCCcceeeeEcc-----CCCEEEEeec
Confidence 3 7999998742 2336888899999999999532 1111111 22233346677776 9999999999
Q ss_pred CCcEEEEECC
Q 010871 442 DSNVYFYDLA 451 (498)
Q Consensus 442 dg~I~iwd~~ 451 (498)
|..|+||++.
T Consensus 567 Ds~VYiW~~~ 576 (712)
T KOG0283|consen 567 DSWVYIWKND 576 (712)
T ss_pred CceEEEEeCC
Confidence 9999999974
No 35
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5e-33 Score=247.18 Aligned_cols=276 Identities=17% Similarity=0.335 Sum_probs=224.1
Q ss_pred CCCCCceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeE
Q 010871 146 NLASSHRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIK 225 (498)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~ 225 (498)
....+.+-.+...+++...+|.. ..+.| ..++..|..+|+++.|++ ++.++++|+.+|.|++|+..- ..++
T Consensus 103 ~WtPeGRRLltgs~SGEFtLWNg---~~fnF---EtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnm--nnVk 173 (464)
T KOG0284|consen 103 RWTPEGRRLLTGSQSGEFTLWNG---TSFNF---ETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNM--NNVK 173 (464)
T ss_pred EEcCCCceeEeecccccEEEecC---ceeeH---HHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccch--hhhH
Confidence 33344455566667777777744 22322 446789999999999999 999999999999999999874 5566
Q ss_pred EeecCC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 010871 226 LLNGHS-KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFS 303 (498)
Q Consensus 226 ~~~~h~-~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~ 303 (498)
.+++|. ..|.+++|+|+...+++||.||+|+|||....+..+.+.+|+ .|.++.|+| ...+|++|+.|..|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCC
Confidence 666655 999999999999999999999999999999998888899987 789999999 56799999999999999999
Q ss_pred CCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcE
Q 010871 304 TGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPV 382 (498)
Q Consensus 304 ~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~ 382 (498)
+++++.++ .|...|..+.|++++++|++++.|..+++||++..+.. ....+|+..++++.|+++ ...+
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl-------~~~r~Hkkdv~~~~WhP~----~~~l 321 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL-------FTYRGHKKDVTSLTWHPL----NESL 321 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH-------HHhhcchhhheeeccccc----cccc
Confidence 99999998 68999999999999999999999999999999843322 224789999999999963 4778
Q ss_pred EEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 383 LLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 383 l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
|.+|+.||.|..|.+..... .......+...+. ...|+| =|.+|++|+.|.++++|.-..
T Consensus 322 ftsgg~Dgsvvh~~v~~~~p---~~~i~~AHd~~iw--sl~~hP-----lGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEEP---LGEIPPAHDGEIW--SLAYHP-----LGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eeeccCCCceEEEecccccc---ccCCCccccccee--eeeccc-----cceeEeecCCCcceeeeccCC
Confidence 99999999999999872211 1111122222333 336776 799999999999999998654
No 36
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-32 Score=259.99 Aligned_cols=294 Identities=15% Similarity=0.231 Sum_probs=241.1
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK 262 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 262 (498)
|..-+..|-.++|+| ...+++++-..|.|++||..- +.++..|..|.++|..++|+|++.+++||+.|-.|++|+..+
T Consensus 5 fEskSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM-~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hhcccccccceecCC-CCCEEEEeecCceeeeehhhh-hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 334467899999999 999999999999999999987 889999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q 010871 263 GDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYS 340 (498)
Q Consensus 263 ~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i 340 (498)
.+|+.++.+|- -|..+.|++ ....+++++.|.+|+||+..+++++..+ +|...|.|..|+|....+++++-|.+|++
T Consensus 83 rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred ceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 99999999995 677888888 6679999999999999999999999999 68999999999999999999999999999
Q ss_pred EEccCCcccccc----------------------cccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 341 ISMESHSGALSR----------------------SHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 341 ~d~~~~~~~~~~----------------------~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
||+......... ........+|...|+-++|+ |.-..+++|+.|..|++|.+.
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-----pTlpliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-----PTLPLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-----CCcceEEecCCcceeeEEEec
Confidence 998542211100 01112356788888888887 888999999999999999986
Q ss_pred ccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCC
Q 010871 399 LEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGEN 478 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 478 (498)
.... .... ...++.+.+ +++.+.|..++|++.++|++|+|||+.. ++.+.+++...+.-+.++-+|..+
T Consensus 237 etKa--WEvD---tcrgH~nnV----ssvlfhp~q~lIlSnsEDksirVwDm~k--Rt~v~tfrrendRFW~laahP~lN 305 (1202)
T KOG0292|consen 237 ETKA--WEVD---TCRGHYNNV----SSVLFHPHQDLILSNSEDKSIRVWDMTK--RTSVQTFRRENDRFWILAAHPELN 305 (1202)
T ss_pred cccc--eeeh---hhhcccCCc----ceEEecCccceeEecCCCccEEEEeccc--ccceeeeeccCCeEEEEEecCCcc
Confidence 3211 1111 112222222 2223334889999999999999999998 567899988888999999999999
Q ss_pred EEEEEeCCCeEEEeecCC
Q 010871 479 LLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 479 ~l~s~~~Dg~i~iW~~~~ 496 (498)
+++.| .|+-+.||.+++
T Consensus 306 LfAAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 306 LFAAG-HDSGMIVFKLER 322 (1202)
T ss_pred eeeee-cCCceEEEEEcc
Confidence 88765 567777887763
No 37
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=242.87 Aligned_cols=286 Identities=20% Similarity=0.310 Sum_probs=233.5
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeE--------EeecCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIK--------LLNGHSKDVTDFDFSSNNQYIASSSMDKTVR 256 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~--------~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~ 256 (498)
|.++.+-|..||| +|++|++|+.||.|.||+..+ ++..+ .|.-|..+|.|++|+.|...|++|+.||.|+
T Consensus 211 g~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~-GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTT-GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCC-CCceEeeccccceeeeehhcc-chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 4466789999999 999999999999999999987 54433 2345789999999999999999999999999
Q ss_pred EEECCCCcEEEEEe-cC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEc
Q 010871 257 VWELTKGDCIRVIY-GV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 257 iwd~~~~~~~~~~~-~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~ 333 (498)
+|.+++|.|++.+. .| .++.|+.|+.++ ..+++++.|.++++.-+.+|++++.+ +|.+.|+...|.++|..+++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 99999999999987 45 589999999965 67778889999999999999999999 6889999999999999999999
Q ss_pred CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeecc
Q 010871 334 AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKL 413 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 413 (498)
.||+|++|+..+..+...... .+..-+|+++-..+ .+...+++|....+|.+.++... .........
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~-----~~~d~~vnsv~~~P----Knpeh~iVCNrsntv~imn~qGQ----vVrsfsSGk 434 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKP-----LGTDYPVNSVILLP----KNPEHFIVCNRSNTVYIMNMQGQ----VVRSFSSGK 434 (508)
T ss_pred CCccEEEecCcchhhhhhccC-----CCCcccceeEEEcC----CCCceEEEEcCCCeEEEEeccce----EEeeeccCC
Confidence 999999999876555433322 33455666665542 45678899999999999988632 111111111
Q ss_pred CCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 414 APRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
......+.+..+ |.|.++++.++|+.++.|.+.+++ ....+..|...|..++-+|..++||+-+.||.+++|.
T Consensus 435 REgGdFi~~~lS-----pkGewiYcigED~vlYCF~~~sG~--LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 435 REGGDFINAILS-----PKGEWIYCIGEDGVLYCFSVLSGK--LERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccCCceEEEEec-----CCCcEEEEEccCcEEEEEEeecCc--eeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 122223334444 599999999999999999999966 5677888999999999999999999999999999996
No 38
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-30 Score=236.98 Aligned_cols=294 Identities=13% Similarity=0.230 Sum_probs=238.8
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC-ceeEEeecCCCCeEEEEEccCCCEEEEEeCC--CcEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP-KVIKLLNGHSKDVTDFDFSSNNQYIASSSMD--KTVR 256 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d--g~v~ 256 (498)
..++.+|..+++-..|+| .|.++|+|...|.|+|||..... -+...++.-.++|..|+|+.++++|++.++. +..+
T Consensus 52 ~~iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred eeeeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence 346788999999999999 89999999999999999987632 3345677788999999999999999887653 3345
Q ss_pred EEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcC
Q 010871 257 VWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 257 iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
++-.++|..+..+.+|+ .+.++.|-|.....+++|+.|++|.+|+=.-.+....+ .|..-|.++.|+|+|..+++++.
T Consensus 131 ~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs 210 (603)
T KOG0318|consen 131 VFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS 210 (603)
T ss_pred EEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC
Confidence 55555788888999996 56799999988999999999999999986555555555 47788999999999999999999
Q ss_pred CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccC
Q 010871 335 QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLA 414 (498)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 414 (498)
||.|++||-.+.+ ....... ..+|++.|..+.|+ ||+..|++++.|.+++|||+.+... .......
T Consensus 211 Dgki~iyDGktge--~vg~l~~--~~aHkGsIfalsWs-----PDs~~~~T~SaDkt~KIWdVs~~sl-----v~t~~~~ 276 (603)
T KOG0318|consen 211 DGKIYIYDGKTGE--KVGELED--SDAHKGSIFALSWS-----PDSTQFLTVSADKTIKIWDVSTNSL-----VSTWPMG 276 (603)
T ss_pred CccEEEEcCCCcc--EEEEecC--CCCccccEEEEEEC-----CCCceEEEecCCceEEEEEeeccce-----EEEeecC
Confidence 9999999765433 2222221 36899999998887 9999999999999999999986521 2222222
Q ss_pred Cce--eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEe
Q 010871 415 PRV--HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVW 492 (498)
Q Consensus 415 ~~~--~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW 492 (498)
..+ ..+.+-| ....|++.+.+|+|.+++...+. .+..+.||...|+++..+|++.+|++|+.||.|.-|
T Consensus 277 ~~v~dqqvG~lW-------qkd~lItVSl~G~in~ln~~d~~--~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 277 STVEDQQVGCLW-------QKDHLITVSLSGTINYLNPSDPS--VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred CchhceEEEEEE-------eCCeEEEEEcCcEEEEecccCCC--hhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 222 2222333 46789999999999999999865 788999999999999999999999999999999999
Q ss_pred ecCCC
Q 010871 493 KRAKT 497 (498)
Q Consensus 493 ~~~~~ 497 (498)
+..++
T Consensus 348 ~~~~g 352 (603)
T KOG0318|consen 348 DSGSG 352 (603)
T ss_pred ecCCc
Confidence 98765
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2e-32 Score=228.43 Aligned_cols=286 Identities=20% Similarity=0.282 Sum_probs=235.3
Q ss_pred eeecccccEEEEEEec--CCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 182 IFDQCKAAVTILKFGH--MSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp--~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
...||+.+|..++||| ++|-+|++++.||.-.+-+-++ +.-+.+|.||.+.|.+...+.+...-++++.|-+-++||
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t-gdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT-GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC-CCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 4589999999999997 4677999999999988888887 788999999999999999999988899999999999999
Q ss_pred CCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE-EEEe-ecCCCeEEEEEcCCCCEEEEEcCCCe
Q 010871 260 LTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI-IKKL-VVDSEVTSMDHDHTGQLLFCGDAQGC 337 (498)
Q Consensus 260 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~ 337 (498)
.-+|..+..+.+..-|..++|+. +.+.|++|+.+..++|||++..+. ...+ .|.+.|..+.|....+.|+++..|+.
T Consensus 88 a~tgdelhsf~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 88 AVTGDELHSFEHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhhhhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 99999999998888888999998 557899999999999999987643 3333 68899999999999999999999999
Q ss_pred EEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCce
Q 010871 338 IYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRV 417 (498)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 417 (498)
|++||.++.+.... .....+|+++.++ ++|++|.+ ...+.|++||...- .......-+.
T Consensus 167 VRLWD~rTgt~v~s--------L~~~s~VtSlEvs-----~dG~ilTi-a~gssV~Fwdaksf-------~~lKs~k~P~ 225 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQS--------LEFNSPVTSLEVS-----QDGRILTI-AYGSSVKFWDAKSF-------GLLKSYKMPC 225 (334)
T ss_pred eEEEEeccCcEEEE--------EecCCCCcceeec-----cCCCEEEE-ecCceeEEeccccc-------cceeeccCcc
Confidence 99999986654332 2234567777776 78876554 56678999998732 2222222223
Q ss_pred eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeee-cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 418 HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL-QGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+.-.++..| +...+++|++|..++.||..++. .+..+ ++|-++|.||.|+|+|...++|+.||+|++|....
T Consensus 226 nV~SASL~P-----~k~~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 226 NVESASLHP-----KKEFFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ccccccccC-----CCceEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 333345555 88999999999999999999965 35554 89999999999999999999999999999998764
Q ss_pred C
Q 010871 497 T 497 (498)
Q Consensus 497 ~ 497 (498)
+
T Consensus 299 ~ 299 (334)
T KOG0278|consen 299 G 299 (334)
T ss_pred C
Confidence 3
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-31 Score=252.83 Aligned_cols=284 Identities=19% Similarity=0.313 Sum_probs=238.4
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 261 (498)
.+.|-.+.|..|+|--...++||.++..+.+++|+..+ .. ...+.||+..|.+++...+|.+|+|||.|.++++|.++
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~-~~-c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT-SY-CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCC-Cc-eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 35677789999998655788999999999999998876 33 34889999999999966678899999999999999885
Q ss_pred CCc----EEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEE---EEe-------ecCCCeEEEEEcCCC
Q 010871 262 KGD----CIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRII---KKL-------VVDSEVTSMDHDHTG 326 (498)
Q Consensus 262 ~~~----~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~---~~~-------~~~~~i~~l~~~~~~ 326 (498)
.+. ++....+|. .+.+++++..+..+|++++.|+++++|++...+.. ..+ .|...|++++++|+.
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 443 445556674 67788888888899999999999999999762211 111 388999999999999
Q ss_pred CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceee
Q 010871 327 QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLT 406 (498)
Q Consensus 327 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 406 (498)
.++++|+.|.+.++|+++. .... ..+.+|...|.++.|. +..+.++|+|.|++|+||.+. .
T Consensus 476 kLiAT~SqDktaKiW~le~--~~l~-----~vLsGH~RGvw~V~Fs-----~~dq~laT~SgD~TvKIW~is-------~ 536 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQ--LRLL-----GVLSGHTRGVWCVSFS-----KNDQLLATCSGDKTVKIWSIS-------T 536 (775)
T ss_pred ceEEecccccceeeecccC--ceEE-----EEeeCCccceEEEEec-----cccceeEeccCCceEEEEEec-------c
Confidence 9999999999999999972 2222 2358999999999998 889999999999999999998 4
Q ss_pred EeEeeccCCc-eeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 010871 407 FRCSLKLAPR-VHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDL 485 (498)
Q Consensus 407 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~ 485 (498)
+.|...+.++ ...+++.|-. +|..|++++.||.|++|++++ ..|+.++.+|...|++++.+|.+.+++||+.
T Consensus 537 fSClkT~eGH~~aVlra~F~~-----~~~qliS~~adGliKlWnikt--~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~ 609 (775)
T KOG0319|consen 537 FSCLKTFEGHTSAVLRASFIR-----NGKQLISAGADGLIKLWNIKT--NECEMTLDAHNDRVWALSVSPLLDMFVTGGG 609 (775)
T ss_pred ceeeeeecCccceeEeeeeee-----CCcEEEeccCCCcEEEEeccc--hhhhhhhhhccceeEEEeecCccceeEecCC
Confidence 4666666543 3445566765 999999999999999999999 5699999999999999999999999999999
Q ss_pred CCeEEEee
Q 010871 486 YGIVIVWK 493 (498)
Q Consensus 486 Dg~i~iW~ 493 (498)
||.|.+|.
T Consensus 610 Dg~i~~wk 617 (775)
T KOG0319|consen 610 DGRIIFWK 617 (775)
T ss_pred CeEEEEee
Confidence 99999996
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-30 Score=251.78 Aligned_cols=325 Identities=20% Similarity=0.286 Sum_probs=247.1
Q ss_pred cccCCCCCCCceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 010871 141 DLRSGNLASSHRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP 220 (498)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~ 220 (498)
.......|..+++.+.+..++.+++|. |..-..-..|++|.++|..++|+| .+.++++||.|..|+||+..+
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWD------YRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~- 82 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWD------YRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKT- 82 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeeh------hhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEeccc-
Confidence 334467788888999999999999884 444445668999999999999999 999999999999999999998
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEE
Q 010871 221 PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITV 299 (498)
Q Consensus 221 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~i 299 (498)
.+++.++.||-+-|..+.|++.-.+|+|+|.|.+|+||+..+++++..+.+|. -|.|..|+| ...++++++-|.+|+|
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRV 161 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEE
Confidence 89999999999999999999999999999999999999999999999999996 788999999 4579999999999999
Q ss_pred EEcCCC---------------------------c-EEEE-e-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccc
Q 010871 300 FNFSTG---------------------------R-IIKK-L-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGA 349 (498)
Q Consensus 300 wd~~~~---------------------------~-~~~~-~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 349 (498)
||+..- . .++. + +|...|+-++|+|.-.+|++|+.|..|++|.+....
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-- 239 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-- 239 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc--
Confidence 998521 0 1111 1 478899999999999999999999999999886432
Q ss_pred ccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeee
Q 010871 350 LSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLS 429 (498)
Q Consensus 350 ~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (498)
........+|...|.++-|+ |..+.+++.+.|++|++||+..... ..+..........+ +.
T Consensus 240 ---aWEvDtcrgH~nnVssvlfh-----p~q~lIlSnsEDksirVwDm~kRt~----v~tfrrendRFW~l-------aa 300 (1202)
T KOG0292|consen 240 ---AWEVDTCRGHYNNVSSVLFH-----PHQDLILSNSEDKSIRVWDMTKRTS----VQTFRRENDRFWIL-------AA 300 (1202)
T ss_pred ---ceeehhhhcccCCcceEEec-----CccceeEecCCCccEEEEecccccc----eeeeeccCCeEEEE-------Ee
Confidence 23333458999999999998 8999999999999999999975421 11111111222222 11
Q ss_pred ccCCCEEEEEeC--------------------------CCcEEEEECCCCCccceeeecCC---CCCeEEEEEcCCCCE-
Q 010871 430 LEKGEYIVAGSE--------------------------DSNVYFYDLAKPKHSCVNKLQGH---RFPVVAVAWNHGENL- 479 (498)
Q Consensus 430 ~~~~~~l~~gs~--------------------------dg~I~iwd~~~~~~~~~~~~~~h---~~~V~~l~~sp~~~~- 479 (498)
.|..+++++|-. |..|+.+|+.+.+...+..++.. ..++.++.++|....
T Consensus 301 hP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~v 380 (1202)
T KOG0292|consen 301 HPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAV 380 (1202)
T ss_pred cCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeE
Confidence 123444443332 44556666665444444555443 367889999997654
Q ss_pred EEEEeCC-CeEEEeecC
Q 010871 480 LASSDLY-GIVIVWKRA 495 (498)
Q Consensus 480 l~s~~~D-g~i~iW~~~ 495 (498)
|++...| |..-++.+.
T Consensus 381 lics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 381 LICSNLDNGEYELVQIP 397 (1202)
T ss_pred EEEeccCCCeEEEEEec
Confidence 4444433 445555544
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-30 Score=246.20 Aligned_cols=298 Identities=20% Similarity=0.296 Sum_probs=213.6
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
...|.||+.+|+++.|+. .|..||+||.|+.|.|||+-. ..-...+.||.+.|+.+-|..+.++|++.|.|+.|++||
T Consensus 100 ~~tfngHK~AVt~l~fd~-~G~rlaSGskDt~IIvwDlV~-E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~Wd 177 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDK-IGTRLASGSKDTDIIVWDLVG-EEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWD 177 (888)
T ss_pred eeeecccccceEEEEEcc-cCceEeecCCCccEEEEEecc-ceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEe
Confidence 457899999999999999 999999999999999999987 677888999999999999998888999999999999999
Q ss_pred CCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcC-----------------------------------
Q 010871 260 LTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFS----------------------------------- 303 (498)
Q Consensus 260 ~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~----------------------------------- 303 (498)
+++..|..+.-.|. .+..+++.+ ..+++++.|+.+++|++.
T Consensus 178 L~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~ 254 (888)
T KOG0306|consen 178 LETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDF 254 (888)
T ss_pred cccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecC
Confidence 99988777666553 455666654 456666666677777661
Q ss_pred -----------------------------------------------------------------------------CCc
Q 010871 304 -----------------------------------------------------------------------------TGR 306 (498)
Q Consensus 304 -----------------------------------------------------------------------------~~~ 306 (498)
.+.
T Consensus 255 s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~ 334 (888)
T KOG0306|consen 255 SDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGT 334 (888)
T ss_pred cccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCc
Confidence 000
Q ss_pred E-------------------------------EEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccccc--
Q 010871 307 I-------------------------------IKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRS-- 353 (498)
Q Consensus 307 ~-------------------------------~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-- 353 (498)
. +....|...|.+++++.+...+++| ..+.|.+|+.++..+.....
T Consensus 335 ~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~ 413 (888)
T KOG0306|consen 335 ENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG 413 (888)
T ss_pred ceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc
Confidence 0 0000123344555555444333333 24456666654332211100
Q ss_pred -------------------------------ccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccccc
Q 010871 354 -------------------------------HRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQ 402 (498)
Q Consensus 354 -------------------------------~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~ 402 (498)
.......+|.+.|.+++.. |++..+++|+.|.+|++||......
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~-----pD~~g~vT~saDktVkfWdf~l~~~ 488 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS-----PDNKGFVTGSADKTVKFWDFKLVVS 488 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeec-----CCCCceEEecCCcEEEEEeEEEEec
Confidence 0001135788888877766 9999999999999999999864322
Q ss_pred --ce----eeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCC
Q 010871 403 --GY----LTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHG 476 (498)
Q Consensus 403 --~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~ 476 (498)
+. +.......+.-.-..+++.++ |||++||++--|.+|+||-+++ ......+.||.-||.||..+||
T Consensus 489 ~~gt~~k~lsl~~~rtLel~ddvL~v~~S-----pdgk~LaVsLLdnTVkVyflDt--lKFflsLYGHkLPV~smDIS~D 561 (888)
T KOG0306|consen 489 VPGTQKKVLSLKHTRTLELEDDVLCVSVS-----PDGKLLAVSLLDNTVKVYFLDT--LKFFLSLYGHKLPVLSMDISPD 561 (888)
T ss_pred cCcccceeeeeccceEEeccccEEEEEEc-----CCCcEEEEEeccCeEEEEEecc--eeeeeeecccccceeEEeccCC
Confidence 11 111111111112222333445 5999999999999999999999 5567889999999999999999
Q ss_pred CCEEEEEeCCCeEEEeecC
Q 010871 477 ENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 477 ~~~l~s~~~Dg~i~iW~~~ 495 (498)
+++++|||.|.+|+||-++
T Consensus 562 SklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred cCeEEeccCCCceEEeccc
Confidence 9999999999999999765
No 43
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=244.88 Aligned_cols=288 Identities=21% Similarity=0.325 Sum_probs=233.6
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC-CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP-PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
.++.|.+.|..+.|-+ +...|++|+.|..|++|++... ...+.++.|..+.|+.+.|.+++.++++++.|+.+++|++
T Consensus 170 ~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 5688999999999998 8899999999999999999762 2367788899999999999999999999999999999999
Q ss_pred CCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEE
Q 010871 261 TKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 261 ~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
...+...++.+|. .+.++.|... ...+++|+.|.+|++||+....+.+++-..+.+..|+.. ...+++|..|+.|+
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~-~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLS-HSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred cchhhhhhhcccccceeeehhhcc-ccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceE
Confidence 9999999999996 6778888764 344999999999999999999998888777777777776 56789999999999
Q ss_pred EEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceee
Q 010871 340 SISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHS 419 (498)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 419 (498)
+||.+........ .-.+.|+++... +++..|++++.|.++.++|+++..- ... +......
T Consensus 326 fwD~Rs~~~~~sv--------~~gg~vtSl~ls-----~~g~~lLsssRDdtl~viDlRt~eI-----~~~--~sA~g~k 385 (459)
T KOG0288|consen 326 FWDIRSADKTRSV--------PLGGRVTSLDLS-----MDGLELLSSSRDDTLKVIDLRTKEI-----RQT--FSAEGFK 385 (459)
T ss_pred EEeccCCceeeEe--------ecCcceeeEeec-----cCCeEEeeecCCCceeeeecccccE-----EEE--eeccccc
Confidence 9998765544332 223367777665 9999999999999999999985421 111 1111122
Q ss_pred eEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 420 IRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
....|+-+.++|++.|+++|+.||.|+||++.+++...+....+....|++++|+|.|..|++++.++.+.+|.
T Consensus 386 ~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 22245666666799999999999999999999977433333333333699999999999999999999999994
No 44
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.3e-30 Score=216.58 Aligned_cols=286 Identities=22% Similarity=0.373 Sum_probs=236.1
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeE--EeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIK--LLNGHSKDVTDFDFSSN-NQYIASSSMDKTVRVW 258 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iw 258 (498)
-+.+|...|.+|+|+. +|..||+|+.|+++.||++.. ..... ...+|.+.|-.++|+|. ...|++++.|.+|++|
T Consensus 15 ~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~-~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLER-DRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecc-hhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 4678899999999999 999999999999999999986 33333 35689999999999884 4689999999999999
Q ss_pred ECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 259 ELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 259 d~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
|+..++++..+.....-.-+.|+|++ .++++++.|..|.+.|.++.+.+...+....+.-++|+-++++++.....|+|
T Consensus 93 d~r~~k~~~~i~~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred EeccCcEEEEeeccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE
Confidence 99999999999988888889999965 68888889999999999999999999999999999999888888888888999
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCcee
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVH 418 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
.|......+ +.....+|.....|+.|. |+|++|++|+.|..+.+||+..- ...++...+.-++.
T Consensus 172 ~ILsypsLk-------pv~si~AH~snCicI~f~-----p~GryfA~GsADAlvSLWD~~EL----iC~R~isRldwpVR 235 (313)
T KOG1407|consen 172 EILSYPSLK-------PVQSIKAHPSNCICIEFD-----PDGRYFATGSADALVSLWDVDEL----ICERCISRLDWPVR 235 (313)
T ss_pred EEEeccccc-------cccccccCCcceEEEEEC-----CCCceEeeccccceeeccChhHh----hhheeeccccCceE
Confidence 998775322 222347787766667666 99999999999999999999732 22233333444444
Q ss_pred eeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC---------CeE
Q 010871 419 SIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY---------GIV 489 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---------g~i 489 (498)
.+ +|+. +|++||+|++|..|-|=++.+|. .+..++ +.++...|+|+|...+||-++.| |.|
T Consensus 236 Tl--SFS~-----dg~~lASaSEDh~IDIA~vetGd--~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~v 305 (313)
T KOG1407|consen 236 TL--SFSH-----DGRMLASASEDHFIDIAEVETGD--RVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTV 305 (313)
T ss_pred EE--Eecc-----CcceeeccCccceEEeEecccCC--eEEEee-ccCCceeEEecCCCceeeEEecCCCCcccccccee
Confidence 44 5665 99999999999999999999976 356664 67899999999999999988764 678
Q ss_pred EEeecCC
Q 010871 490 IVWKRAK 496 (498)
Q Consensus 490 ~iW~~~~ 496 (498)
+++-+..
T Consensus 306 KiFG~~~ 312 (313)
T KOG1407|consen 306 KIFGLSN 312 (313)
T ss_pred EEecCCC
Confidence 8876653
No 45
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=6.1e-31 Score=226.06 Aligned_cols=293 Identities=18% Similarity=0.287 Sum_probs=230.1
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCC-----------------CCceeEEeecCCCCeEEEEEccCC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-----------------PPKVIKLLNGHSKDVTDFDFSSNN 243 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~-----------------~~~~~~~~~~h~~~V~~l~~s~~~ 243 (498)
+.+..|++++.+.+|+| +|.++|+|+.|..|+|.|++. ....+++|..|.+.|+++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 45678999999999999 999999999999999999871 114678899999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCc---EEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe----ecCCC
Q 010871 244 QYIASSSMDKTVRVWELTKGD---CIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL----VVDSE 316 (498)
Q Consensus 244 ~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~~~~ 316 (498)
..|++|+.|++|+++|+.... ..+.++...++.++.|+| ++.+|++|..-.++++||+.+.++...- +|...
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 999999999999999998543 344556667899999999 5678889999999999999998887655 47889
Q ss_pred eEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCC-ccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEE
Q 010871 317 VTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKR-KCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFF 395 (498)
Q Consensus 317 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iw 395 (498)
|+++.+++.+++.++|+.||.|++||--...+..... ..| ...|.+..|. .+++++++.+.|..+++|
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~------~AH~gsevcSa~Ft-----kn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG------NAHGGSEVCSAVFT-----KNGKYILSSGKDSTVKLW 332 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH------hhcCCceeeeEEEc-----cCCeEEeecCCcceeeee
Confidence 9999999999999999999999999854433322211 334 3467777776 899999999999999999
Q ss_pred EccccccceeeEeEeec--cCCceeeeEEEEeeeeeccCCCEEEEEeC-CCcEEEEECCCCCccceeeecCCCCCeEEEE
Q 010871 396 SVALEIQGYLTFRCSLK--LAPRVHSIRASFCPLLSLEKGEYIVAGSE-DSNVYFYDLAKPKHSCVNKLQGHRFPVVAVA 472 (498)
Q Consensus 396 d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~ 472 (498)
.+.++.. ....... .........+.|.. ...|++.-.+ .+.+.-||.++.....+.. -+|.+.+..+.
T Consensus 333 Ei~t~R~---l~~YtGAg~tgrq~~rtqAvFNh-----tEdyVl~pDEas~slcsWdaRtadr~~l~s-lgHn~a~R~i~ 403 (430)
T KOG0640|consen 333 EISTGRM---LKEYTGAGTTGRQKHRTQAVFNH-----TEDYVLFPDEASNSLCSWDARTADRVALLS-LGHNGAVRWIV 403 (430)
T ss_pred eecCCce---EEEEecCCcccchhhhhhhhhcC-----ccceEEccccccCceeeccccchhhhhhcc-cCCCCCceEEE
Confidence 9986532 1111111 11111122233443 5666665544 4679999999876433333 48999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEeecC
Q 010871 473 WNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 473 ~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
-+|.+.-+++|+.|-.+++|-..
T Consensus 404 HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 404 HSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eCCCCCceeeecccceeeeeeec
Confidence 99999999999999999999754
No 46
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=7.5e-30 Score=218.81 Aligned_cols=282 Identities=17% Similarity=0.247 Sum_probs=220.4
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCce-eEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV-IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDC 265 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 265 (498)
.+.|.+|+|||....++++|+.||+|++|+++..+.. -+....|.++|.+++|+.||..+++|+.|+.+++||+.+++.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 6789999999977778889999999999999874333 344567999999999999999999999999999999999976
Q ss_pred EEEEecCCCeEEEEEEcCC-CcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEcc
Q 010871 266 IRVIYGVSSQLCIRFHPVN-NNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISME 344 (498)
Q Consensus 266 ~~~~~~~~~v~~i~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~ 344 (498)
...-.+..++.++.|.+.. ..+|++|+.|.+|+.||.+...++.++..+..+.++..- ..+++++..+..|.+|+++
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIAVYNLE 184 (347)
T ss_pred eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEEEEEcC
Confidence 6655566788899998732 248999999999999999999999999999999888764 4578899999999999997
Q ss_pred CCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc-ccceeeEeEeeccCCceeeeEEE
Q 010871 345 SHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE-IQGYLTFRCSLKLAPRVHSIRAS 423 (498)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 423 (498)
.......... ...+-.+.++... .+....+.|+-+|.+.+..+... ......++|...... +...-.+
T Consensus 185 n~~te~k~~~-----SpLk~Q~R~va~f-----~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~-~~~~VYa 253 (347)
T KOG0647|consen 185 NPPTEFKRIE-----SPLKWQTRCVACF-----QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS-VNDDVYA 253 (347)
T ss_pred CCcchhhhhc-----CcccceeeEEEEE-----ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC-CCCceEE
Confidence 6544332211 1223334455443 78888899999999999988763 244456677665332 1111113
Q ss_pred EeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEE
Q 010871 424 FCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASS 483 (498)
Q Consensus 424 ~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~ 483 (498)
...+++.|.-..|++++.||+..+||-+. +..+...+.|..+|++.+|+.+|.++|-+
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkda--r~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDA--RTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchh--hhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 33344444788899999999999999887 44577788899999999999999988765
No 47
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=1.6e-30 Score=237.75 Aligned_cols=291 Identities=15% Similarity=0.217 Sum_probs=227.1
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC---ceeEEee-cCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP---KVIKLLN-GHSKDVTDFDFSSNNQYIASSSMDKTVRV 257 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~---~~~~~~~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~i 257 (498)
.|.+|+..|.++++.| .|..|++|+.|.+|++||+..-. +..+.+. .....|.++.|++.|..|++.+.....+|
T Consensus 162 ~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred eccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 5789999999999999 99999999999999999997422 2233333 34568999999999999998888889999
Q ss_pred EECCCCcEEEEEe------------cC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc-EEEEee------cCCCe
Q 010871 258 WELTKGDCIRVIY------------GV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR-IIKKLV------VDSEV 317 (498)
Q Consensus 258 wd~~~~~~~~~~~------------~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~------~~~~i 317 (498)
+|-...+.....+ +| ..+.|.+|+|.+...+++++.||++++||+...+ ....+. ..-.+
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 9966544443332 34 3567999999999999999999999999997654 333333 23468
Q ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCcc--ceeeEEEeEeeEcCCCcEEEEEEcCCcEEEE
Q 010871 318 TSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKC--PVTTVQYRSFSLLAGGPVLLTCTQDGNLSFF 395 (498)
Q Consensus 318 ~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iw 395 (498)
+.++|+++|.+||+|+.||.|.+|+........... ...+|.. .|+++.|+ ++|++|++-+.|+++++|
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~----vk~AH~~g~~Itsi~FS-----~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMK----VKDAHLPGQDITSISFS-----YDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceE----eeeccCCCCceeEEEec-----cccchhhhccCCCceeee
Confidence 999999999999999999999999985544332222 1256665 78888887 999999999999999999
Q ss_pred EccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeC------CCcEEEEECCCCCccceeeecCCCCCeE
Q 010871 396 SVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE------DSNVYFYDLAKPKHSCVNKLQGHRFPVV 469 (498)
Q Consensus 396 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~------dg~I~iwd~~~~~~~~~~~~~~h~~~V~ 469 (498)
|++...+..... ..+........++|+| +.++|++|.. .|.+++||..+ ...+.++.-....|.
T Consensus 392 DLrq~kkpL~~~---tgL~t~~~~tdc~FSP-----d~kli~TGtS~~~~~~~g~L~f~d~~t--~d~v~ki~i~~aSvv 461 (641)
T KOG0772|consen 392 DLRQFKKPLNVR---TGLPTPFPGTDCCFSP-----DDKLILTGTSAPNGMTAGTLFFFDRMT--LDTVYKIDISTASVV 461 (641)
T ss_pred eccccccchhhh---cCCCccCCCCccccCC-----CceEEEecccccCCCCCceEEEEeccc--eeeEEEecCCCceEE
Confidence 998654322221 1222333344557777 9999999875 46899999988 556777777788899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEe
Q 010871 470 AVAWNHGENLLASSDLYGIVIVW 492 (498)
Q Consensus 470 ~l~~sp~~~~l~s~~~Dg~i~iW 492 (498)
.+.|||.-+.|..|+.||+++||
T Consensus 462 ~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 462 RCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEeecchhhheeeecCCCceEEE
Confidence 99999999999999999999986
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1e-30 Score=228.72 Aligned_cols=249 Identities=17% Similarity=0.321 Sum_probs=209.3
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEE
Q 010871 221 PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITV 299 (498)
Q Consensus 221 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~i 299 (498)
-++.+.+++|.+.|.|+++.|.+.+|++|+.|++|+|||+.+|+...++.+| ..+..+++++. ..++++++.|+.|+.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQVKC 219 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc-CceEEEecCCCeeEE
Confidence 3566788999999999999999999999999999999999999999999988 46778999984 578889999999999
Q ss_pred EEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC
Q 010871 300 FNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA 378 (498)
Q Consensus 300 wd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~ 378 (498)
||++..+.++.+ +|-+.|.|++.+|.-+.|++|+.|..+++||+++...... +.+|..+|..+.+. |
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~-------l~GH~~~V~~V~~~-----~ 287 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV-------LSGHTNPVASVMCQ-----P 287 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE-------ecCCCCcceeEEee-----c
Confidence 999999999887 7889999999999999999999999999999987654432 47899999999987 7
Q ss_pred CCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccce
Q 010871 379 GGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCV 458 (498)
Q Consensus 379 ~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~ 458 (498)
-...+++|+.|++|++||++.+.. ......+...+.++ +.+| ....+|+++.|. |+-|++..+. .+
T Consensus 288 ~dpqvit~S~D~tvrlWDl~agkt----~~tlt~hkksvral--~lhP-----~e~~fASas~dn-ik~w~~p~g~--f~ 353 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAGKT----MITLTHHKKSVRAL--CLHP-----KENLFASASPDN-IKQWKLPEGE--FL 353 (460)
T ss_pred CCCceEEecCCceEEEeeeccCce----eEeeecccceeeEE--ecCC-----chhhhhccCCcc-ceeccCCccc--hh
Confidence 788899999999999999986522 11112222222222 4444 778888888875 9999999865 46
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 459 NKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 459 ~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
..+.+|..-|++++.+.|+ ++++|++.|.|.+||.+.+
T Consensus 354 ~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred hccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 7799999999999998765 7788999999999998764
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.2e-30 Score=240.01 Aligned_cols=283 Identities=17% Similarity=0.226 Sum_probs=238.4
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 261 (498)
.|..|...|-+|.|+| ...+++++-.+|.|.||+.++ ...++.+.-..-+|.+..|-+..+++++|+.|..|+|++..
T Consensus 8 k~~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyet-qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYET-QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred HhhccCCceeeeecCC-CCceEEEeeecCeeEEEeccc-ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 3455789999999999 899999999999999999998 88999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-cEEEEe-ecCCCeEEEEEcCCC-CEEEEEcCCCe
Q 010871 262 KGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-RIIKKL-VVDSEVTSMDHDHTG-QLLFCGDAQGC 337 (498)
Q Consensus 262 ~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~-~~~~~i~~l~~~~~~-~~l~~~~~dg~ 337 (498)
+++.+..+..|. -+.+++.+|. ..++++++.|-+|++||.+.+ .+.+++ +|...|.+++|+|.. +.+++++-|++
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred cceeeEEeeccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 999999999986 5789999995 578899999999999999865 455666 688999999999964 58999999999
Q ss_pred EEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCce
Q 010871 338 IYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRV 417 (498)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 417 (498)
|++|.+....... .+.+|...|+++.+-.- .+..+|++|+.|.+|+|||..+. .|...+.++.
T Consensus 165 VKVWslgs~~~nf-------Tl~gHekGVN~Vdyy~~---gdkpylIsgaDD~tiKvWDyQtk-------~CV~TLeGHt 227 (794)
T KOG0276|consen 165 VKVWSLGSPHPNF-------TLEGHEKGVNCVDYYTG---GDKPYLISGADDLTIKVWDYQTK-------SCVQTLEGHT 227 (794)
T ss_pred EEEEEcCCCCCce-------eeeccccCcceEEeccC---CCcceEEecCCCceEEEeecchH-------HHHHHhhccc
Confidence 9999987554433 34799999999998621 34579999999999999998743 4555556665
Q ss_pred eeeEE-EEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 010871 418 HSIRA-SFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIV 491 (498)
Q Consensus 418 ~~~~~-~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~i 491 (498)
+.+.. .|+| .-.+|++|++||+++||+..+-+ ....+.-.-+.|+|++-.+.+..++.|.+.|.|.+
T Consensus 228 ~Nvs~v~fhp-----~lpiiisgsEDGTvriWhs~Ty~--lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 228 NNVSFVFFHP-----ELPIIISGSEDGTVRIWNSKTYK--LEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ccceEEEecC-----CCcEEEEecCCccEEEecCccee--hhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 55544 4554 88899999999999999999844 45555556678999999998888888887777654
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=210.37 Aligned_cols=248 Identities=18% Similarity=0.276 Sum_probs=208.0
Q ss_pred ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEE
Q 010871 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVF 300 (498)
Q Consensus 222 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iw 300 (498)
+..+.+.+|.++|..+.|+-+|+|.++++.|.+|++|+...|.+++++.+|+ .+..++.+.+ +..+++|+.|..|.+|
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D-nskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD-NSKFASCGGDKAVQVW 86 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc-ccccccCCCCceEEEE
Confidence 4567788999999999999999999999999999999999999999999996 6777777774 5678888899999999
Q ss_pred EcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCC
Q 010871 301 NFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG 379 (498)
Q Consensus 301 d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~ 379 (498)
|+.+|+.++.+ .|...|+.+.|+.+...+++|+-|..+++||.+.......+.. ......|.++.+.
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil-----dea~D~V~Si~v~------- 154 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL-----DEAKDGVSSIDVA------- 154 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh-----hhhcCceeEEEec-------
Confidence 99999999999 6999999999999999999999999999999988765544432 4456677777754
Q ss_pred CcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCcccee
Q 010871 380 GPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVN 459 (498)
Q Consensus 380 ~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~ 459 (498)
+..+++|+.||+++.||++.+.. ....+..+++.+ +|++ +++..++++.|+++++.|-.+++ ++.
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l------~sDy~g~pit~v--s~s~-----d~nc~La~~l~stlrLlDk~tGk--lL~ 219 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTL------SSDYFGHPITSV--SFSK-----DGNCSLASSLDSTLRLLDKETGK--LLK 219 (307)
T ss_pred ccEEEeeccCCcEEEEEeeccee------ehhhcCCcceeE--EecC-----CCCEEEEeeccceeeecccchhH--HHH
Confidence 88899999999999999986521 111233344443 5554 99999999999999999999955 688
Q ss_pred eecCCCCCeE--EEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 460 KLQGHRFPVV--AVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 460 ~~~~h~~~V~--~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
.++||...-. ..+++.....+++|+.||.|++||+...
T Consensus 220 sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 220 SYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred HhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 9999986643 4567777789999999999999998754
No 51
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1e-29 Score=242.16 Aligned_cols=283 Identities=19% Similarity=0.303 Sum_probs=236.4
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 261 (498)
.+.||...|.++++|. +...+++|+ .+.|+||+..+ .++++++.. +-+.+..|.|.++++++|...|.+.++|+.
T Consensus 368 ~~~GHR~dVRsl~vS~-d~~~~~Sga-~~SikiWn~~t-~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSS-DSILLASGA-GESIKIWNRDT-LKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeccchhheeEEEeec-CceeeeecC-CCcEEEEEccC-cceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEee
Confidence 4689999999999997 666666655 57799999998 888888874 388999999999999999999999999999
Q ss_pred CCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC-----CcE--------EEEeecCCCeEEEEEcCCCC
Q 010871 262 KGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFST-----GRI--------IKKLVVDSEVTSMDHDHTGQ 327 (498)
Q Consensus 262 ~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~-----~~~--------~~~~~~~~~i~~l~~~~~~~ 327 (498)
+...+.+++.|. .+..++..|+ +..+++|+.|.+|++||..- +.. .+++.....|.|+.++|+|+
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD-~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPD-NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhhhhhhhhccccceeeeeecCC-CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 999888888885 6679999995 46788999999999999742 111 13345678899999999999
Q ss_pred EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeE
Q 010871 328 LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTF 407 (498)
Q Consensus 328 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 407 (498)
+|+++--|.++++|-+++..-.+ .+-+|.-||.|+.++ |+++.++|||.|..|++|-+..+.
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFfl-------sLYGHkLPV~smDIS-----~DSklivTgSADKnVKiWGLdFGD------ 583 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFL-------SLYGHKLPVLSMDIS-----PDSKLIVTGSADKNVKIWGLDFGD------ 583 (888)
T ss_pred EEEEEeccCeEEEEEecceeeee-------eecccccceeEEecc-----CCcCeEEeccCCCceEEeccccch------
Confidence 99999999999999887543222 237899999999987 999999999999999999987552
Q ss_pred eEeeccCCceee-eEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 010871 408 RCSLKLAPRVHS-IRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486 (498)
Q Consensus 408 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D 486 (498)
|...+..+-.. +...|.| +..++++++.|+.|+-||-.. ...+..+.+|...|+|++.+|+|.+++++|.|
T Consensus 584 -CHKS~fAHdDSvm~V~F~P-----~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 584 -CHKSFFAHDDSVMSVQFLP-----KTHLFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred -hhhhhhcccCceeEEEEcc-----cceeEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcCCCCeEEeccCC
Confidence 33333332222 4446666 889999999999999999888 67899999999999999999999999999999
Q ss_pred CeEEEeecCC
Q 010871 487 GIVIVWKRAK 496 (498)
Q Consensus 487 g~i~iW~~~~ 496 (498)
.+|++|...+
T Consensus 656 ~sIRlwE~td 665 (888)
T KOG0306|consen 656 KSIRLWERTD 665 (888)
T ss_pred ceeEeeeccC
Confidence 9999998654
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.2e-29 Score=211.11 Aligned_cols=271 Identities=18% Similarity=0.292 Sum_probs=206.9
Q ss_pred eeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC-CceeEEeecCC
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP-PKVIKLLNGHS 231 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~-~~~~~~~~~h~ 231 (498)
+..+...++.+++|.......+.. .+.+-.+|+..|.+++|+| .|++||+|+.|.++.||.-... .+++..+.||.
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~c--k~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHE 105 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTC--KTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDGEFECVATLEGHE 105 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEE--EEeccccchheeeeeeecC-CCcEEEEeeccceEEEeecCCCceeEEeeeeccc
Confidence 344555566667665554222333 2334578999999999999 9999999999999999987642 47788999999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCC---cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcC---C
Q 010871 232 KDVTDFDFSSNNQYIASSSMDKTVRVWELTKG---DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFS---T 304 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~---~ 304 (498)
..|.|++|+++|.+||+|+.|+.|-||.+..+ .++..++.|. .|..+.|+| ...+|++++.|.+|++|.-. .
T Consensus 106 nEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~ddd 184 (312)
T KOG0645|consen 106 NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDD 184 (312)
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCC
Confidence 99999999999999999999999999998854 5778888885 788999999 56799999999999999876 2
Q ss_pred CcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEE
Q 010871 305 GRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVL 383 (498)
Q Consensus 305 ~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l 383 (498)
-.++.++ .|...|.+++|++.|..|++++.|+.+++|-.... ....|..++..+.|. ...|
T Consensus 185 W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----------~~~~~sr~~Y~v~W~-------~~~I 246 (312)
T KOG0645|consen 185 WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----------LSGMHSRALYDVPWD-------NGVI 246 (312)
T ss_pred eeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----------cchhcccceEeeeec-------ccce
Confidence 3577777 47779999999999999999999999999975311 124567788888773 5689
Q ss_pred EEEEcCCcEEEEEccccccc-eeeEe--EeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 384 LTCTQDGNLSFFSVALEIQG-YLTFR--CSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 384 ~t~s~dg~i~iwd~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
++++.|+.|++|.-.....+ ..... ....+...++. ..|.| .-.++|++|+.||.|++|.+.
T Consensus 247 aS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs--V~w~p----~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS--VQWNP----KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce--EEEcC----CCCCceeecCCCceEEEEEec
Confidence 99999999999987632111 11111 11111112222 24554 137899999999999999874
No 53
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-28 Score=209.87 Aligned_cols=287 Identities=16% Similarity=0.251 Sum_probs=228.6
Q ss_pred ccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC--CCcEEEEECCCC
Q 010871 186 CKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM--DKTVRVWELTKG 263 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~--dg~v~iwd~~~~ 263 (498)
-.+.|+++.|++ +|.+|++++.|.+++|||..+ +..++++..+.-.|..++|......++.++. |.+||.-++.+.
T Consensus 13 ~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 13 TNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred CCCceeEEEecC-CCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 367899999999 999999999999999999998 8889999888889999999887777777766 889999999999
Q ss_pred cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEE
Q 010871 264 DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSIS 342 (498)
Q Consensus 264 ~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d 342 (498)
+.++.+.+|. .|..++.+|.+ ..+++++.|++|++||++..++...+.... -..++|+|+|-++|++.....|++||
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD 168 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYD 168 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEE
Confidence 9999999996 67899999955 788999999999999999888877665433 23568999999999999988999999
Q ss_pred ccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEE
Q 010871 343 MESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRA 422 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (498)
++............. ..... .|..+.++++|++++.++..+.+.+.|.-.+. ...............+.+
T Consensus 169 ~Rs~dkgPF~tf~i~--~~~~~-----ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 169 LRSFDKGPFTTFSIT--DNDEA-----EWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred ecccCCCCceeEccC--CCCcc-----ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCcceeE
Confidence 987633222221110 12233 34455555999999999999999999987653 111222222222233667
Q ss_pred EEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC-CCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 423 SFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG-HRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 423 ~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.|+| |++++++|+.||+|++|++.++. .+..+.+ +.+++.++.|+|.-.+++|++ ..+-+|-..
T Consensus 239 ~ftP-----ds~Fvl~gs~dg~i~vw~~~tg~--~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 239 TFTP-----DSKFVLSGSDDGTIHVWNLETGK--KVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred EECC-----CCcEEEEecCCCcEEEEEcCCCc--EeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 8887 99999999999999999999965 5777877 789999999999888888775 478888544
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.3e-29 Score=222.13 Aligned_cols=281 Identities=19% Similarity=0.280 Sum_probs=219.7
Q ss_pred ccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCC---CEEEEEeCCCcEEEEECCC
Q 010871 186 CKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN---QYIASSSMDKTVRVWELTK 262 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~---~~l~s~s~dg~v~iwd~~~ 262 (498)
|.+-|.+|... ++.|++|++||.++|||.. ++...++.||.++|.+++|.-.+ ..|+++|.|.++++|.++.
T Consensus 104 hdDWVSsv~~~---~~~IltgsYDg~~riWd~~--Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 104 HDDWVSSVKGA---SKWILTGSYDGTSRIWDLK--GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred chhhhhhhccc---CceEEEeecCCeeEEEecC--CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 57788888875 5899999999999999997 68899999999999999986543 3599999999999999987
Q ss_pred CcE----EEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC-------------------------CcEEEEe-
Q 010871 263 GDC----IRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFST-------------------------GRIIKKL- 311 (498)
Q Consensus 263 ~~~----~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~-------------------------~~~~~~~- 311 (498)
+.. +....+|. .|.++...+ ++..+++|+.|..|.||+..+ +.++..+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 743 33334674 677888888 558999999999999999321 1123333
Q ss_pred ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCc
Q 010871 312 VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGN 391 (498)
Q Consensus 312 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~ 391 (498)
+|..+|.++.|++ ...+++++.|.+|+.||+......... .....++++.+. +..++|++|+.|..
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~--------~~~ksl~~i~~~-----~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL--------TTNKSLNCISYS-----PLSKLLASGSSDRH 323 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee--------ecCcceeEeecc-----cccceeeecCCCCc
Confidence 4888999999988 678999999999999999765433321 223345555555 88999999999999
Q ss_pred EEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEE
Q 010871 392 LSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAV 471 (498)
Q Consensus 392 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l 471 (498)
|++||.+.+.. .........+...+.. +.|+| .+...|++|+.|+++++||+++.+ .++..+.+|...|.++
T Consensus 324 irl~DPR~~~g-s~v~~s~~gH~nwVss--vkwsp----~~~~~~~S~S~D~t~klWDvRS~k-~plydI~~h~DKvl~v 395 (423)
T KOG0313|consen 324 IRLWDPRTGDG-SVVSQSLIGHKNWVSS--VKWSP----TNEFQLVSGSYDNTVKLWDVRSTK-APLYDIAGHNDKVLSV 395 (423)
T ss_pred eeecCCCCCCC-ceeEEeeecchhhhhh--eecCC----CCceEEEEEecCCeEEEEEeccCC-CcceeeccCCceEEEE
Confidence 99999997633 2222222233333333 36777 477889999999999999999865 3688999999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEeecC
Q 010871 472 AWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 472 ~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.|. ++..|++||.|.+|+|+.-.
T Consensus 396 dW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 396 DWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ecc-CCceEEeccCcceEEEeccc
Confidence 998 56789999999999998754
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.4e-29 Score=232.63 Aligned_cols=239 Identities=16% Similarity=0.258 Sum_probs=210.4
Q ss_pred cccCCCCCCCceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 010871 141 DLRSGNLASSHRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP 220 (498)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~ 220 (498)
.......|+..+..+.+.+.+.+.+|..... .+...|+-+.-+|.+.+|-+ ..+++++|+.|..|+||+..+
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetq------tmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt- 86 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQ------TMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNT- 86 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccc------eeeeeeeecccchhhheeee-ccceEEEecCCceEEEEeccc-
Confidence 3445666777888888888999998854433 34445666788999999998 899999999999999999999
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEE
Q 010871 221 PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG-DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEIT 298 (498)
Q Consensus 221 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~ 298 (498)
.+.++.|..|.+-|.|++.+|...+++|+|.|-+|++||.+.+ .+.+++.+|. -|.+++|.|.+.+.+++++-|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 8999999999999999999999999999999999999999976 7888999996 6889999999999999999999999
Q ss_pred EEEcCCCcEEEEe-ecCCCeEEEEEcCCC--CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEee
Q 010871 299 VFNFSTGRIIKKL-VVDSEVTSMDHDHTG--QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFS 375 (498)
Q Consensus 299 iwd~~~~~~~~~~-~~~~~i~~l~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 375 (498)
||.+.+..+..++ .|...|+|+++-+.| .+|++|+.|..|++||..+.++... +.+|...|..+.|+
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T-------LeGHt~Nvs~v~fh--- 236 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT-------LEGHTNNVSFVFFH--- 236 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH-------hhcccccceEEEec---
Confidence 9999999888888 589999999998866 4999999999999999976654432 47899999999998
Q ss_pred EcCCCcEEEEEEcCCcEEEEEccc
Q 010871 376 LLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 376 ~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
|.-..+++|+.||+++||+..+
T Consensus 237 --p~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 237 --PELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred --CCCcEEEEecCCccEEEecCcc
Confidence 8999999999999999999764
No 56
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.3e-30 Score=228.65 Aligned_cols=283 Identities=17% Similarity=0.230 Sum_probs=223.6
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
+.|.||.++|.|++=+|..-..+|+|+.||.|+|||+.+ ..+...++.|.+.|..|++.. ..+++++.|.+|+.|-+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhh-hhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 346999999999999994447999999999999999998 889999999999999999986 68999999999999998
Q ss_pred CCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCC-EEEEEcCCCeE
Q 010871 261 TKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQ-LLFCGDAQGCI 338 (498)
Q Consensus 261 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~l~~~~~dg~i 338 (498)
+. ..++++.+.+.+..+.-+. ....+++++. .|.|||.....++..+. .-..|.++.|+|... .|+++..|+.|
T Consensus 137 ~~-~p~~tilg~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DG-PPLHTILGKSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cC-Ccceeeecccccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 75 5788888888777777766 4567777754 59999999999999986 446799999999765 67777799999
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCce-
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRV- 417 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~- 417 (498)
.+||++..+... .-+..+.-..++|+|.+-.|++++.|..++.||++.-... ...+..++
T Consensus 213 vLyD~R~~~Pl~-------------KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p------~~v~~dhvs 273 (433)
T KOG0268|consen 213 VLYDLRQASPLK-------------KVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP------LNVHKDHVS 273 (433)
T ss_pred EEEecccCCccc-------------eeeeeccccceecCccccceeeccccccceehhhhhhccc------chhhcccce
Confidence 999998654322 2244445556666698889999999999999999843211 11122222
Q ss_pred eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 418 HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
..+.+.|+| .|+-|++||.|.+|+||.+..+....+.- ..-...|.|+.|+.|.+++++||+|+.|++|.-.
T Consensus 274 AV~dVdfsp-----tG~EfvsgsyDksIRIf~~~~~~SRdiYh-tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 274 AVMDVDFSP-----TGQEFVSGSYDKSIRIFPVNHGHSRDIYH-TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred eEEEeccCC-----CcchhccccccceEEEeecCCCcchhhhh-HhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 233446665 99999999999999999998754222111 1123569999999999999999999999999753
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5e-29 Score=245.69 Aligned_cols=270 Identities=21% Similarity=0.324 Sum_probs=207.1
Q ss_pred eeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCe
Q 010871 155 FSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDV 234 (498)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V 234 (498)
........+.+|....... .....+.+|...|++++|+| ++.++++|+.|++|+|||+...+..++++.+|...|
T Consensus 175 ~~~~~~~~i~~~~~~~~~~----~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v 249 (456)
T KOG0266|consen 175 AAASSDGLIRIWKLEGIKS----NLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYV 249 (456)
T ss_pred EEccCCCcEEEeecccccc----hhhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCce
Confidence 3334455555554422221 12334589999999999999 999999999999999999966578999999999999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc--EEEEe
Q 010871 235 TDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR--IIKKL 311 (498)
Q Consensus 235 ~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~ 311 (498)
++++|+|+++++++|+.|++|+|||+++++++..+.+|. .+.+++|.+ ++++|++++.|+.|++||+.++. ++..+
T Consensus 250 ~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 328 (456)
T KOG0266|consen 250 TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLL 328 (456)
T ss_pred EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecc
Confidence 999999999999999999999999999999999999996 777899988 55788888999999999999999 45555
Q ss_pred e-cCC--CeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc
Q 010871 312 V-VDS--EVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ 388 (498)
Q Consensus 312 ~-~~~--~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~ 388 (498)
. +.. .+++++|+|++.++++++.|+.+++|++......... ..|...+.++ .....++.+.++++|+.
T Consensus 329 ~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~i~sg~~ 399 (456)
T KOG0266|consen 329 SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY-------TGHSNLVRCI--FSPTLSTGGKLIYSGSE 399 (456)
T ss_pred cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee-------cccCCcceeE--ecccccCCCCeEEEEeC
Confidence 3 322 5899999999999999999999999999754433222 3333333222 22233589999999999
Q ss_pred CCcEEEEEccccccceeeEeEeeccCCc--eeeeEEEEeeeeeccCCCEEEEEe--CCCcEEEEECC
Q 010871 389 DGNLSFFSVALEIQGYLTFRCSLKLAPR--VHSIRASFCPLLSLEKGEYIVAGS--EDSNVYFYDLA 451 (498)
Q Consensus 389 dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~gs--~dg~I~iwd~~ 451 (498)
|+.|.+|++.+... ......+ .......+++ ..+++++++ .|+.|++|...
T Consensus 400 d~~v~~~~~~s~~~-------~~~l~~h~~~~~~~~~~~~-----~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 400 DGSVYVWDSSSGGI-------LQRLEGHSKAAVSDLSSHP-----TENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CceEEEEeCCccch-------hhhhcCCCCCceeccccCC-----CcCeeeecCcCCCceEEEecCC
Confidence 99999999985321 1111111 1122234444 889999988 68899999764
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.3e-31 Score=230.26 Aligned_cols=233 Identities=18% Similarity=0.380 Sum_probs=194.6
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEE
Q 010871 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRII 308 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 308 (498)
....|.|+.+. ...+++|..|++|+|||..+..+++.+.+|. .|.|+.|. ...+++|+.|.+|+|||+++++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchh
Confidence 45689999984 5589999999999999999999999999995 78899995 469999999999999999999999
Q ss_pred EEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE
Q 010871 309 KKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT 387 (498)
Q Consensus 309 ~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s 387 (498)
.++ .|-..|..+.|+ +.++++++.|..|.+||+...+.... ...+.+|...|+.+.|. .+++++++
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~----rrVLvGHrAaVNvVdfd-------~kyIVsAS 337 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITL----RRVLVGHRAAVNVVDFD-------DKYIVSAS 337 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHH----HHHHhhhhhheeeeccc-------cceEEEec
Confidence 988 677889999996 46899999999999999987653222 12357899999999974 77999999
Q ss_pred cCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCC
Q 010871 388 QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFP 467 (498)
Q Consensus 388 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~ 467 (498)
.|.+|++|++.+. .+.....++-..+.+.- -.|+++++|+.|.+|++||+..| .++..++||+.-
T Consensus 338 gDRTikvW~~st~-------efvRtl~gHkRGIAClQ------Yr~rlvVSGSSDntIRlwdi~~G--~cLRvLeGHEeL 402 (499)
T KOG0281|consen 338 GDRTIKVWSTSTC-------EFVRTLNGHKRGIACLQ------YRDRLVVSGSSDNTIRLWDIECG--ACLRVLEGHEEL 402 (499)
T ss_pred CCceEEEEeccce-------eeehhhhcccccceehh------ccCeEEEecCCCceEEEEecccc--HHHHHHhchHHh
Confidence 9999999999854 23333333333333211 17899999999999999999994 589999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 468 VVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 468 V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
|.++.|. .+.+++|+.||+|+|||+..+
T Consensus 403 vRciRFd--~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 403 VRCIRFD--NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred hhheeec--CceeeeccccceEEEEecccc
Confidence 9999995 678999999999999998753
No 59
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=217.20 Aligned_cols=293 Identities=14% Similarity=0.215 Sum_probs=235.7
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
+...|.||+++|+.++... ...++.+++.|.+.+||.+++ +.++..+.||.+.|.++.|++.+.++++++.|++..||
T Consensus 140 lvre~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred ehhhhcccccceeeehhhc-CCcceeecccccceeEEeecc-ccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 3446899999999999987 778999999999999999999 89999999999999999999999999999999999999
Q ss_pred EC------CCC----------------------------------cEEEEEecCCC-eEEEEEEcCCCcEEEEEeCCCcE
Q 010871 259 EL------TKG----------------------------------DCIRVIYGVSS-QLCIRFHPVNNNFLSVGNANKEI 297 (498)
Q Consensus 259 d~------~~~----------------------------------~~~~~~~~~~~-v~~i~~~~~~~~~l~~g~~dg~i 297 (498)
.. ... .++..+.+|.. +.+..|.. ++..+++++.|.+.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTA 296 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccc
Confidence 62 110 03455667754 45677776 77899999999999
Q ss_pred EEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeE
Q 010871 298 TVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSL 376 (498)
Q Consensus 298 ~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 376 (498)
.+||+++++.+..+ +|....+.++-+|..+++++++.|.+.++||++..- .....+.+|...|+++.|.
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI------~sV~VFQGHtdtVTS~vF~---- 366 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI------QSVAVFQGHTDTVTSVVFN---- 366 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc------ceeeeecccccceeEEEEe----
Confidence 99999999999998 689999999999999999999999999999997432 2234468999999999985
Q ss_pred cCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCcc
Q 010871 377 LAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHS 456 (498)
Q Consensus 377 s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~ 456 (498)
.+..+++|+.|.+|++||++........++ ....++.+ ..+ ..+..|+.--.+..|++||+......
T Consensus 367 --~dd~vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRv--avs-----~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 367 --TDDRVVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRV--AVS-----KGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred --cCCceeecCCCceEEEeeeccccCcceeee----cCCcccee--Eee-----cCCceEEeccCCceEEEEecCCCccc
Confidence 577899999999999999986533222222 12222222 222 35668888888899999999864422
Q ss_pred --ceeeecCCCCCeEEEEEcCCC--CEEEEEeCCCeEEEeecCCC
Q 010871 457 --CVNKLQGHRFPVVAVAWNHGE--NLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 457 --~~~~~~~h~~~V~~l~~sp~~--~~l~s~~~Dg~i~iW~~~~~ 497 (498)
+...-++|..-|+|++|..+. .-|+++|.|..+.-|++..+
T Consensus 434 RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 434 RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 222456899999999998543 35889999999999998765
No 60
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=5.1e-28 Score=238.42 Aligned_cols=255 Identities=15% Similarity=0.222 Sum_probs=194.5
Q ss_pred EeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCc--------EEEEEecCC-Ce
Q 010871 206 GASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSN-NQYIASSSMDKTVRVWELTKGD--------CIRVIYGVS-SQ 275 (498)
Q Consensus 206 g~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~--------~~~~~~~~~-~v 275 (498)
|+.++.|++|+... ...+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.++. .+..+.+|. .|
T Consensus 50 GG~~gvI~L~~~~r-~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMR-KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCC-CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 66788999999877 5678889999999999999996 7899999999999999998642 334566664 78
Q ss_pred EEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccccccc
Q 010871 276 LCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHR 355 (498)
Q Consensus 276 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 355 (498)
.+++|+|.+..+|++++.|++|+|||+++++.+..+.+...|.+++|+++|.+|++++.|+.|++||++......
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~----- 203 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS----- 203 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE-----
Confidence 899999987777889999999999999999988888778899999999999999999999999999997643221
Q ss_pred ccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC----cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeecc
Q 010871 356 HRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG----NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLE 431 (498)
Q Consensus 356 ~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (498)
...+|.+.+....+....+++++.+|++++.|+ .|+|||++....... ...+......+ .|....+
T Consensus 204 --tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~----~~~ld~~~~~L----~p~~D~~ 273 (568)
T PTZ00420 204 --SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALV----TMSIDNASAPL----IPHYDES 273 (568)
T ss_pred --EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceE----EEEecCCccce----EEeeeCC
Confidence 125676666554444344558899999988775 799999985322111 11111111222 2222235
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCC
Q 010871 432 KGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE 477 (498)
Q Consensus 432 ~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 477 (498)
+|.++++|+.|+.|++|++..+....+..+. +..++.+++|.|..
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 7999999999999999999876533333333 66788999999964
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=241.77 Aligned_cols=274 Identities=22% Similarity=0.372 Sum_probs=226.3
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEE-eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKL-LNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG 263 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 263 (498)
.|...|.|..|. ..++++++.|++|++|+..+ +..+.. +.||.+.|.++++...+.+|++|+.|.++++||+.+|
T Consensus 206 ~~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~-~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 206 TDDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNN-GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cCcchhhhheee---cCeEEecCCCceeEEeeccc-ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 356778999996 47999999999999999998 555555 9999999999999877789999999999999999999
Q ss_pred cEEEEEecCCCeE-EEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q 010871 264 DCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDAQGCIYSI 341 (498)
Q Consensus 264 ~~~~~~~~~~~v~-~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~ 341 (498)
+|...+.+|.... ++... ...+++|+.|.+|++|++.++..+..+. |...|.++..+ +.++++|+.||.|.+|
T Consensus 282 ~C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW 356 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVW 356 (537)
T ss_pred cEEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEE
Confidence 9999999997554 55543 4678889999999999999999999997 99999999997 7899999999999999
Q ss_pred EccCCcccccccccccccCCCccceeeEEEeEeeEcCCC-cEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeee
Q 010871 342 SMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG-PVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSI 420 (498)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~-~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
+....+ ... .+.+|...|.++.+. + ..+++|+.|+.|++||+++.. .+...+..+....
T Consensus 357 ~~~~~~--cl~-----sl~gH~~~V~sl~~~-------~~~~~~Sgs~D~~IkvWdl~~~~------~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 357 DPRTGK--CLK-----SLSGHTGRVYSLIVD-------SENRLLSGSLDTTIKVWDLRTKR------KCIHTLQGHTSLV 416 (537)
T ss_pred Ehhhce--eee-----eecCCcceEEEEEec-------CcceEEeeeeccceEeecCCchh------hhhhhhcCCcccc
Confidence 987332 222 247799999999653 4 899999999999999998642 2332233222222
Q ss_pred EEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC-CCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 421 RASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG-HRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
.... ..+++|++++.|++|++||..++ .++..+.+ |.+.|..+++. ...+++++.||.+++||+..+
T Consensus 417 -~~l~-----~~~~~Lvs~~aD~~Ik~WD~~~~--~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 417 -SSLL-----LRDNFLVSSSADGTIKLWDAEEG--ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred -cccc-----cccceeEeccccccEEEeecccC--ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence 1111 17899999999999999999994 47888888 77899999886 467888999999999999875
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=3.2e-30 Score=234.33 Aligned_cols=253 Identities=16% Similarity=0.320 Sum_probs=207.6
Q ss_pred CceeEEeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCC-CcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcE
Q 010871 221 PKVIKLLNGHSKDVTDFDFSS-NNQYIASSSMDKTVRVWELTK-GDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEI 297 (498)
Q Consensus 221 ~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i 297 (498)
.+.+..+.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|. +|..++|+.++ ..+++++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-Ceeeeeecceee
Confidence 567888999999999999999 888999999999999999986 89999999996 67799999955 677788899999
Q ss_pred EEEEcCCCcEEEEeecCCCeEEEEEcCCC-CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeE
Q 010871 298 TVFNFSTGRIIKKLVVDSEVTSMDHDHTG-QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSL 376 (498)
Q Consensus 298 ~iwd~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 376 (498)
++||+++|+++..+.....++|+.|+|++ +.+++|+.|+.|+.||++... +... ...|-+.|..+.|.
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvqe-----Yd~hLg~i~~i~F~---- 351 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQE-----YDRHLGAILDITFV---- 351 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHHH-----HHhhhhheeeeEEc----
Confidence 99999999999999999999999999999 799999999999999998654 2222 36678889998887
Q ss_pred cCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC-c
Q 010871 377 LAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK-H 455 (498)
Q Consensus 377 s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~-~ 455 (498)
++|.++++.+.|+.++||+.+........ .....+.+. .+...|++.++++-+.|+.|.+|.+...- .
T Consensus 352 -~~g~rFissSDdks~riWe~~~~v~ik~i------~~~~~hsmP----~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 352 -DEGRRFISSSDDKSVRIWENRIPVPIKNI------ADPEMHTMP----CLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred -cCCceEeeeccCccEEEEEcCCCccchhh------cchhhccCc----ceecCCCCCeehhhccCceEEEEeccccccc
Confidence 99999999999999999998754321111 111111111 12223599999999999999999976532 2
Q ss_pred cceeeecCCCC--CeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 456 SCVNKLQGHRF--PVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 456 ~~~~~~~~h~~--~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.....+.||.. --..+.|||||.+|++|+.||.+.+||..+
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 23456778864 356789999999999999999999999875
No 63
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.8e-28 Score=219.91 Aligned_cols=283 Identities=19% Similarity=0.305 Sum_probs=239.8
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
...|+++...| ....+++|+.|..+.++|... .+.+..++||...|+.+.|+++...+++++.|..|+||......+.
T Consensus 219 ~pgi~ald~~~-s~~~ilTGG~d~~av~~d~~s-~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 219 TPGITALDIIP-SSSKILTGGEDKTAVLFDKPS-NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCCeeEEeecC-CCCcceecCCCCceEEEecch-hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 35789999998 678999999999999999998 8889999999999999999999999999999999999999887776
Q ss_pred EEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecC---CCeEEEEEcCCCCEEEEEcCCCeEEEEE
Q 010871 267 RVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD---SEVTSMDHDHTGQLLFCGDAQGCIYSIS 342 (498)
Q Consensus 267 ~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~~i~~l~~~~~~~~l~~~~~dg~i~i~d 342 (498)
.....| .+|..+..+|. +.+|++++.||+..+.|++++..+....+. -.+++.+|+|||.+|.+|..||.|++||
T Consensus 297 ~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred cccccccccceeeeeccC-CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 666666 57889999994 578889999999999999999999888664 4589999999999999999999999999
Q ss_pred ccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEE
Q 010871 343 MESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRA 422 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (498)
+....... .+.+|.++|..+.|. .+|-+|++++.|+.|++||++.... +..+ .......+.. .
T Consensus 376 lks~~~~a-------~Fpght~~vk~i~Fs-----ENGY~Lat~add~~V~lwDLRKl~n-~kt~--~l~~~~~v~s--~ 438 (506)
T KOG0289|consen 376 LKSQTNVA-------KFPGHTGPVKAISFS-----ENGYWLATAADDGSVKLWDLRKLKN-FKTI--QLDEKKEVNS--L 438 (506)
T ss_pred cCCccccc-------cCCCCCCceeEEEec-----cCceEEEEEecCCeEEEEEehhhcc-ccee--ecccccccee--E
Confidence 98765322 247899999999987 8999999999999999999985421 1111 1111112222 3
Q ss_pred EEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 423 SFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 423 ~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
.|.. .|.+|++++.|=.|++++-.+..+.++..+..|.+..+++.|....++|+++|.|..++++.+
T Consensus 439 ~fD~-----SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 439 SFDQ-----SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEcC-----CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 4544 899999999988888888777778888899999999999999999999999999999999865
No 64
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=220.69 Aligned_cols=271 Identities=20% Similarity=0.289 Sum_probs=221.3
Q ss_pred CCCceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 010871 148 ASSHRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLL 227 (498)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~ 227 (498)
+....+.+.++....+++|....+.. ...+.||++.|..|+|+. .|++||+++.|-.+++||..+..++++.+
T Consensus 117 hp~~~~v~~as~d~tikv~D~~tg~~------e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~ 189 (406)
T KOG0295|consen 117 HPSEALVVSASEDATIKVFDTETGEL------ERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTFFRCIKSL 189 (406)
T ss_pred ccCceEEEEecCCceEEEEEccchhh------hhhhhccccceeEEEEec-CccEEEecCCccchhheeHHHHHHHHHHh
Confidence 44555666666666666665544433 335789999999999999 99999999999999999998767788889
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeE-EEEEEcCCCcEEEEEeCCCcEEEEEcCCCc
Q 010871 228 NGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGR 306 (498)
Q Consensus 228 ~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 306 (498)
.+|...|.++.|-|.|.+|+|++.|.+|+.|++.+|-++.++.+|..-+ .+..+. ++.++++++.|.+|++|-+.+++
T Consensus 190 ~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~ 268 (406)
T KOG0295|consen 190 IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQ 268 (406)
T ss_pred cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccch
Confidence 9999999999999999999999999999999999999999999997644 555555 67899999999999999999998
Q ss_pred EEEEe-ecCCCeEEEEEcCC---------------CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEE
Q 010871 307 IIKKL-VVDSEVTSMDHDHT---------------GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQ 370 (498)
Q Consensus 307 ~~~~~-~~~~~i~~l~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 370 (498)
+...+ .|+.+|.+++|-|. ++++++++.|++|++||+......+. +.+|...|..+.
T Consensus 269 ~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t-------L~ghdnwVr~~a 341 (406)
T KOG0295|consen 269 CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT-------LVGHDNWVRGVA 341 (406)
T ss_pred hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE-------EecccceeeeeE
Confidence 88777 58889999999763 25899999999999999976543332 378999999998
Q ss_pred EeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeE-EEEeeeeeccCCCEEEEEeCCCcEEEEE
Q 010871 371 YRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR-ASFCPLLSLEKGEYIVAGSEDSNVYFYD 449 (498)
Q Consensus 371 ~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~gs~dg~I~iwd 449 (498)
|+ |.|++|+++..|+++++||++.. +|......+.+.+. ..|. .+..++++|+-|.++++|.
T Consensus 342 f~-----p~Gkyi~ScaDDktlrvwdl~~~-------~cmk~~~ah~hfvt~lDfh-----~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 342 FS-----PGGKYILSCADDKTLRVWDLKNL-------QCMKTLEAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred Ec-----CCCeEEEEEecCCcEEEEEeccc-------eeeeccCCCcceeEEEecC-----CCCceEEeccccceeeeee
Confidence 88 99999999999999999999854 33333333222221 2333 3677999999999999997
Q ss_pred C
Q 010871 450 L 450 (498)
Q Consensus 450 ~ 450 (498)
.
T Consensus 405 c 405 (406)
T KOG0295|consen 405 C 405 (406)
T ss_pred c
Confidence 4
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.9e-29 Score=207.90 Aligned_cols=282 Identities=16% Similarity=0.240 Sum_probs=223.0
Q ss_pred EEEEEecCCCCEEEEEe-------CCCcEEEEEcCCCCceeEEee--cCCCCeEEEEEccCC-CEEEEEeCCCcEEEEEC
Q 010871 191 TILKFGHMSSDLLAYGA-------SDGTLTVCTVSDPPKVIKLLN--GHSKDVTDFDFSSNN-QYIASSSMDKTVRVWEL 260 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~-------~dg~i~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~ 260 (498)
.++.|||.-.++||.+. ..|.+.|.++.. ..-+..+. .-.+.+..++|+++. ..+++++.||+++|||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~-~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTD-PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCC-CCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 57899997666666653 478999999964 22232222 356789999999865 57889999999999996
Q ss_pred CC-CcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCC-CCEEEEEcCCC
Q 010871 261 TK-GDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHT-GQLLFCGDAQG 336 (498)
Q Consensus 261 ~~-~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~-~~~l~~~~~dg 336 (498)
.. ..++..++.|. .|.++.|.+.....+++++.|++|++|+...++.+.++ +|...|....|+|. .+++++++.||
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 53 35778888774 88999999999999999999999999999999999998 58899999999996 56899999999
Q ss_pred eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCc
Q 010871 337 CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPR 416 (498)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 416 (498)
.+++||++.....+. +..|...+.++.|+. .+.+.|+||+.|+.|+.||++.-......+ ....
T Consensus 171 ~l~lwdvr~~gk~~~-------i~ah~~Eil~cdw~k----y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-----~gh~ 234 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMS-------IEAHNSEILCCDWSK----YNHNVLATGGVDNLVRGWDIRNLRTPLFEL-----NGHG 234 (311)
T ss_pred eEEEEEecCCCceeE-------EEeccceeEeecccc----cCCcEEEecCCCceEEEEehhhccccceee-----cCCc
Confidence 999999986633322 367788899999875 568899999999999999998643221111 1222
Q ss_pred eeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEeec
Q 010871 417 VHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH-GENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~i~iW~~ 494 (498)
...-+..|+| ....+|++++.|-+++|||...+. .++.+...|..-|..+.|++ ++.++|+++.|+.++||+-
T Consensus 235 ~AVRkvk~Sp----h~~~lLaSasYDmT~riw~~~~~d-s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 235 LAVRKVKFSP----HHASLLASASYDMTVRIWDPERQD-SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEEEEecCc----chhhHhhhccccceEEecccccch-hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 2222346666 356789999999999999998653 46777888999999999996 5679999999999999984
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=8.5e-28 Score=254.55 Aligned_cols=264 Identities=16% Similarity=0.226 Sum_probs=205.5
Q ss_pred CCcEEEEEcCCCCceeEE-----eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--------cEEEEEecCCCe
Q 010871 209 DGTLTVCTVSDPPKVIKL-----LNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG--------DCIRVIYGVSSQ 275 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~~-----~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~--------~~~~~~~~~~~v 275 (498)
+|.+++|+... ...... +..|.+.|.+++|+|++++|++|+.|+.|+||++... .....+.++..+
T Consensus 457 ~gl~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSK-LRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKL 535 (793)
T ss_pred hhhhhhhcccc-eEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCce
Confidence 67788888875 333322 3458999999999999999999999999999997632 123345556778
Q ss_pred EEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcC-CCCEEEEEcCCCeEEEEEccCCccccccc
Q 010871 276 LCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDH-TGQLLFCGDAQGCIYSISMESHSGALSRS 353 (498)
Q Consensus 276 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 353 (498)
.+++|++..+.+|++++.||+|++||+.+++.+..+ .|...|++++|+| ++.+|++|+.||.|++||++.......
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~-- 613 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT-- 613 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE--
Confidence 899999877789999999999999999999888887 5889999999997 688999999999999999975432111
Q ss_pred ccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCC
Q 010871 354 HRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKG 433 (498)
Q Consensus 354 ~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (498)
.. +...+.++.|.+ +++.+|++|+.||.|++||++...... .....+...+..+ .|. ++
T Consensus 614 -----~~-~~~~v~~v~~~~----~~g~~latgs~dg~I~iwD~~~~~~~~---~~~~~h~~~V~~v--~f~------~~ 672 (793)
T PLN00181 614 -----IK-TKANICCVQFPS----ESGRSLAFGSADHKVYYYDLRNPKLPL---CTMIGHSKTVSYV--RFV------DS 672 (793)
T ss_pred -----Ee-cCCCeEEEEEeC----CCCCEEEEEeCCCeEEEEECCCCCccc---eEecCCCCCEEEE--EEe------CC
Confidence 11 224577777642 679999999999999999997542111 1111222233322 332 68
Q ss_pred CEEEEEeCCCcEEEEECCCCC----ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 434 EYIVAGSEDSNVYFYDLAKPK----HSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 434 ~~l~~gs~dg~I~iwd~~~~~----~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.+|++++.|++|++||+..+. ..++..+.+|...+.+++|+|++.+|++|+.||.|++|+...
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 899999999999999997531 246788999999999999999999999999999999999653
No 67
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=6.2e-27 Score=201.80 Aligned_cols=279 Identities=17% Similarity=0.231 Sum_probs=216.5
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
++.|+.|.|+| .+..|++++.||.+++||+.. ......+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++...
T Consensus 13 ~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~-~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPA-NSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hhceeeEEEcC-cCCcEEEEeccCcEEEEeccc-hhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 56899999998 777888888999999999987 4444444 4999999999987 458999999999999999999887
Q ss_pred EEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCC
Q 010871 267 RVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESH 346 (498)
Q Consensus 267 ~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~ 346 (498)
....+..++.|+.+.+ ....+++|++|++|++||.+....+..+.....|.++... ++.|++|+.+..+.+||++..
T Consensus 89 ~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 7777778999999998 5678999999999999999987777777777788888764 678999999999999999876
Q ss_pred cccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc---ccceeeEeEeeccCCceeeeEEE
Q 010871 347 SGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE---IQGYLTFRCSLKLAPRVHSIRAS 423 (498)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 423 (498)
....... ....+-.+.+++.. |++.-+++++-||.|.+=.++.. ......++|......... +-..
T Consensus 166 ~~~~q~r-----eS~lkyqtR~v~~~-----pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~-~~yP 234 (323)
T KOG1036|consen 166 DEPFQRR-----ESSLKYQTRCVALV-----PNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE-IIYP 234 (323)
T ss_pred cchhhhc-----cccceeEEEEEEEe-----cCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce-EEEE
Confidence 5544221 13334455666555 88888999999999987555543 123345555544433221 2223
Q ss_pred EeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 010871 424 FCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDL 485 (498)
Q Consensus 424 ~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~ 485 (498)
...+.++|--..||+|+.||.|.+||+.+.+ .+..+..-...|.+++|+.+|..||.++.
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK--rl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRK--RLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcchh--hhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 3334444467889999999999999999844 56777766778999999999999999874
No 68
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.5e-28 Score=235.85 Aligned_cols=250 Identities=19% Similarity=0.303 Sum_probs=191.2
Q ss_pred eeEEee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-------------------------------------
Q 010871 223 VIKLLN-GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD------------------------------------- 264 (498)
Q Consensus 223 ~~~~~~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~------------------------------------- 264 (498)
..+.+. .|.+.|.++.|++||+|||+||.||.|+||.+...+
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344556 899999999999999999999999999999876500
Q ss_pred -----------------------EEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEE
Q 010871 265 -----------------------CIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSM 320 (498)
Q Consensus 265 -----------------------~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l 320 (498)
+++.+.+| ..|..+.|+. .++|++++.|.+|++|++...+++..|.|..-|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEE
Confidence 22334556 4688999986 469999999999999999999999999999999999
Q ss_pred EEcCC-CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 321 DHDHT-GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 321 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
+|+|. .++|++|+-||.|++|++........ ..-..-|++++|. |+|+..++|+.+|.+++|+...
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W--------~Dl~~lITAvcy~-----PdGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDW--------NDLRDLITAVCYS-----PDGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEee--------hhhhhhheeEEec-----cCCceEEEEEeccEEEEEEccC
Confidence 99994 57999999999999999865443222 2233568888877 9999999999999999999875
Q ss_pred cccceeeE---eEeeccCC-ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCC--CeEEEEE
Q 010871 400 EIQGYLTF---RCSLKLAP-RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRF--PVVAVAW 473 (498)
Q Consensus 400 ~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~--~V~~l~~ 473 (498)
........ ....+..+ .++.+ .|.| .+...+++.+.|..|+|||..+ ..++..|+|+.. .-....|
T Consensus 483 lk~~~~~~I~~~~~Kk~~~~rITG~--Q~~p----~~~~~vLVTSnDSrIRI~d~~~--~~lv~KfKG~~n~~SQ~~Asf 554 (712)
T KOG0283|consen 483 LKLVSDFHIRLHNKKKKQGKRITGL--QFFP----GDPDEVLVTSNDSRIRIYDGRD--KDLVHKFKGFRNTSSQISASF 554 (712)
T ss_pred CeEEEeeeEeeccCccccCceeeee--EecC----CCCCeEEEecCCCceEEEeccc--hhhhhhhcccccCCcceeeeE
Confidence 32111110 11111112 23333 4444 1334677888999999999977 446788887543 3355689
Q ss_pred cCCCCEEEEEeCCCeEEEeecC
Q 010871 474 NHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 474 sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+.||++|++++.|..|+||+++
T Consensus 555 s~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccCCCEEEEeecCceEEEEeCC
Confidence 9999999999999999999974
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.1e-27 Score=238.16 Aligned_cols=294 Identities=17% Similarity=0.245 Sum_probs=222.8
Q ss_pred ccccEEEEEEecCCCCEEEEEe--CCCcEEEEEcCCC-----------CceeEEeecCCCCeEEEEEccCCCEEEEEeCC
Q 010871 186 CKAAVTILKFGHMSSDLLAYGA--SDGTLTVCTVSDP-----------PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD 252 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~~lasg~--~dg~i~iwd~~~~-----------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d 252 (498)
+...|.+++.+| ++..+|||+ .||.++||+.+.- .+.+.+...|.+.|.|+.|++||++||+||.|
T Consensus 12 ~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 355799999999 999999999 8999999997631 23455667899999999999999999999999
Q ss_pred CcEEEEECCC------------------CcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-e
Q 010871 253 KTVRVWELTK------------------GDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-V 312 (498)
Q Consensus 253 g~v~iwd~~~------------------~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~ 312 (498)
+.|.||.... -+++..+.+|. .|..++|+| ++.++++++.|++|.|||..+.+.+..+ .
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeec
Confidence 9999999772 12567777774 789999999 5689999999999999999999888888 5
Q ss_pred cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc----
Q 010871 313 VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ---- 388 (498)
Q Consensus 313 ~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~---- 388 (498)
|...|..+.|+|-|++|++-+.|++|++|.+..-...... ..........-.|..++|+|||.+|++...
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I------t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSI------TKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEee------ccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 9999999999999999999999999999985432211111 122222334445677888899999998643
Q ss_pred CCcEEEEEccccccceeeEeEeeccCCceeee-EEEEeeeeeccCCC------------EEEEEeCCCcEEEEECCCCCc
Q 010871 389 DGNLSFFSVALEIQGYLTFRCSLKLAPRVHSI-RASFCPLLSLEKGE------------YIVAGSEDSNVYFYDLAKPKH 455 (498)
Q Consensus 389 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~l~~gs~dg~I~iwd~~~~~~ 455 (498)
-..+.|.+-.+ +.....+.++...+ .+.|+|-.+..... .+|+|+.|++|-||.....+
T Consensus 244 ~~~~~IieR~t-------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R- 315 (942)
T KOG0973|consen 244 KSTIAIIERGT-------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR- 315 (942)
T ss_pred cceeEEEecCC-------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC-
Confidence 23466665431 22222222222222 23666655442222 68999999999999997643
Q ss_pred cceee-ecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 456 SCVNK-LQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 456 ~~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
++.. ..-....|.+++|+|||..|+.+|.||+|.+..++.
T Consensus 316 -Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 316 -PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred -chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 3322 223457899999999999999999999999998874
No 70
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.9e-28 Score=207.47 Aligned_cols=287 Identities=20% Similarity=0.323 Sum_probs=218.2
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVI 269 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 269 (498)
-.|+.|++ .|.+||+|+.||.|.|||+.+ ....+.+.+|..+|++++|+++|+.|+|+|.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T-~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDT-FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccc-cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 68999999 999999999999999999998 7788889999999999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee------cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEc
Q 010871 270 YGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV------VDSEVTSMDHDHTGQLLFCGDAQGCIYSISM 343 (498)
Q Consensus 270 ~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~ 343 (498)
...+++..+.|+|...+.+++.-.+..-.+.++..+... .+. ......+..|++.|+++++|...|.+.+++.
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 999999999999988888877767766667776653221 121 1122334468899999999999999999988
Q ss_pred cCCcccccccccccccCCCccceee-EEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccc-e-eeEeEeeccCCceeee
Q 010871 344 ESHSGALSRSHRHRTTGKRKCPVTT-VQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQG-Y-LTFRCSLKLAPRVHSI 420 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~-~-~~~~~~~~~~~~~~~~ 420 (498)
.+...... + .|++ -.+..+.++..|+.|+.-+.|..|+.|++..-... . .......++...++.
T Consensus 183 ~t~e~vas--~----------rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk- 249 (405)
T KOG1273|consen 183 ETLECVAS--F----------RITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK- 249 (405)
T ss_pred chheeeee--e----------eechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh-
Confidence 65532221 1 1222 22333444489999999999999999998731110 0 000111111111221
Q ss_pred EEEEeeeeeccCCCEEEEEeCC-CcEEEEECCCCCccceeeecCCC-CCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 421 RASFCPLLSLEKGEYIVAGSED-SNVYFYDLAKPKHSCVNKLQGHR-FPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~gs~d-g~I~iwd~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
..|..++++.+|.|+++|+.. ..++||....|. +++.+.|.. ....++.|+|-...+++- ..|.|+||....
T Consensus 250 -~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs--LVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 250 -LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS--LVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred -hhhhheeecCCccEEEeccccceeEEEEecCCcc--eeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 255555666699999988753 579999999854 688888877 568899999998888888 679999998653
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.8e-27 Score=205.40 Aligned_cols=240 Identities=17% Similarity=0.274 Sum_probs=195.9
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCC--EEEEEeCCCcEEEEE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQ--YIASSSMDKTVRVWE 259 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~--~l~s~s~dg~v~iwd 259 (498)
.|..|.++|++|+. ++.++|+||.|-+|+|||+.. ......+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+
T Consensus 38 ~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k-~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 38 AFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRK-RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccceeEEEe---cceeEeccCCCCcEEEEeccc-hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 45789999999999 579999999999999999998 677778888999999999998765 899999999999999
Q ss_pred CCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 260 LTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 260 ~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
+..-.++.+++.|. .|+.++.+| .+.+.++.+.|+.++.||+-+|+.-.........+.+.|+|.|.+++++..++ |
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i 191 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK-I 191 (362)
T ss_pred cCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE-E
Confidence 99999999999884 688999999 45788888899999999999999887777666667799999999888877553 6
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCcee
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVH 418 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
-+|.++........ .....
T Consensus 192 ~i~q~d~A~v~~~i-------------------------------------------------------------~~~~r 210 (362)
T KOG0294|consen 192 DIYQLDNASVFREI-------------------------------------------------------------ENPKR 210 (362)
T ss_pred EEEecccHhHhhhh-------------------------------------------------------------hcccc
Confidence 66655422110000 00001
Q ss_pred eeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEE--cCCCCEEEEEeCCCeEEEeecCC
Q 010871 419 SIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAW--NHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.+.+.|. ++..+++|+.|+.|.+||... ..+...+.+|...|.++.+ .|++.+|+|+|.||.|+|||++.
T Consensus 211 ~l~~~~l------~~~~L~vG~d~~~i~~~D~ds--~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 211 ILCATFL------DGSELLVGGDNEWISLKDTDS--DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ceeeeec------CCceEEEecCCceEEEeccCC--CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 1111121 688899999999999999998 5578899999999999985 46788999999999999999874
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.2e-27 Score=209.69 Aligned_cols=285 Identities=14% Similarity=0.209 Sum_probs=223.8
Q ss_pred ccccccccccccCCCCCCCceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCC--CCEEEEEeCC
Q 010871 132 EVDSWSSSRDLRSGNLASSHRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMS--SDLLAYGASD 209 (498)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~lasg~~d 209 (498)
....|-++... .....+...+.+..++|...-.. ...+.||.++|.+++|.-.+ ...|++++.|
T Consensus 103 ~hdDWVSsv~~-------~~~~IltgsYDg~~riWd~~Gk~-------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D 168 (423)
T KOG0313|consen 103 LHDDWVSSVKG-------ASKWILTGSYDGTSRIWDLKGKS-------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMD 168 (423)
T ss_pred cchhhhhhhcc-------cCceEEEeecCCeeEEEecCCce-------EEEEecCCcceeeeEEEecCCccceEEEecCC
Confidence 44567665544 25567778888889988665443 23568999999988886512 2369999999
Q ss_pred CcEEEEEcCCCCc---eeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------------------------
Q 010871 210 GTLTVCTVSDPPK---VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK------------------------ 262 (498)
Q Consensus 210 g~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~------------------------ 262 (498)
.++++|..+.+.. ....-.||...|.+++..++|..+++||.|.+|+||+.++
T Consensus 169 qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~ 248 (423)
T KOG0313|consen 169 QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGG 248 (423)
T ss_pred ceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccc
Confidence 9999999986432 2333459999999999999999999999999999999321
Q ss_pred -CcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q 010871 263 -GDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYS 340 (498)
Q Consensus 263 -~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i 340 (498)
+.++.++.+|. +|.++.|.+ ...+++++.|.+|+.||+.++..+..+.....+.++.++|..++|++|+.|..|++
T Consensus 249 ~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 249 TRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred ccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceee
Confidence 12456677785 677888887 56899999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeee
Q 010871 341 ISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSI 420 (498)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
||.+...+..... .+.+|..-|.++.|++ .+...|++++.|+++++||++........+ ....-..+
T Consensus 327 ~DPR~~~gs~v~~----s~~gH~nwVssvkwsp----~~~~~~~S~S~D~t~klWDvRS~k~plydI-----~~h~DKvl 393 (423)
T KOG0313|consen 327 WDPRTGDGSVVSQ----SLIGHKNWVSSVKWSP----TNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-----AGHNDKVL 393 (423)
T ss_pred cCCCCCCCceeEE----eeecchhhhhheecCC----CCceEEEEEecCCeEEEEEeccCCCcceee-----ccCCceEE
Confidence 9999887665432 2578999999999984 456678999999999999999654222211 12233444
Q ss_pred EEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 421 RASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
.+.|. ++.+|++|+.|.+|+|+.-.
T Consensus 394 ~vdW~------~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 394 SVDWN------EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEecc------CCceEEeccCcceEEEeccc
Confidence 55665 68899999999999998754
No 73
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.9e-27 Score=215.04 Aligned_cols=294 Identities=14% Similarity=0.238 Sum_probs=227.1
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCce----------------eEEe-ecCCCCeEEEEEccCCC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV----------------IKLL-NGHSKDVTDFDFSSNNQ 244 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~----------------~~~~-~~h~~~V~~l~~s~~~~ 244 (498)
....|.-+|+||+++| +..++.+++.+|+|.=|++.++... ...- ++|...|.+++.++||+
T Consensus 137 ~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 3467788999999999 8999999999999999998873211 0011 37889999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEE
Q 010871 245 YIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDH 322 (498)
Q Consensus 245 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~ 322 (498)
||++|+.|..|.||+.++.+.+..+.+|. .|.+++|-. +.+.+++++.|+.|++|++.....+.++ +|+..|.++..
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999985 677899987 6788889999999999999988777766 79999999999
Q ss_pred cCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccccc
Q 010871 323 DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQ 402 (498)
Q Consensus 323 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~ 402 (498)
...++.+.+|+.|+++++|++...+... +.++.+.+.|++| -+...+++|+.+|.|.+|++.....
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~eesqli--------frg~~~sidcv~~------In~~HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPEESQLI--------FRGGEGSIDCVAF------INDEHFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred hcccceEEeccccceeEEEeccccceee--------eeCCCCCeeeEEE------ecccceeeccCCceEEEeeecccCc
Confidence 9999999999999999999995443332 3567788899988 5788999999999999999875432
Q ss_pred ceeeEeEeeccCCceeeeE--EEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC--ccceeeecCCCCCeEEEEEcCCCC
Q 010871 403 GYLTFRCSLKLAPRVHSIR--ASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK--HSCVNKLQGHRFPVVAVAWNHGEN 478 (498)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~ 478 (498)
.+.. .......+....+. .-.+.++..+...++++|+.+|.|++|-+..+- ..++..+. -.+-|++|+|+++|+
T Consensus 361 lf~~-~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 361 LFTS-RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGK 438 (479)
T ss_pred eeEe-eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCC
Confidence 2111 11111111100000 123344555689999999999999999999872 33445554 467899999999999
Q ss_pred EEEEE-eCCCeEEEee
Q 010871 479 LLASS-DLYGIVIVWK 493 (498)
Q Consensus 479 ~l~s~-~~Dg~i~iW~ 493 (498)
.|++| +....+-=|-
T Consensus 439 ~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 439 RIVAGIGKEHRLGRWW 454 (479)
T ss_pred EEEEecccccccceee
Confidence 65554 5555554454
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=217.33 Aligned_cols=278 Identities=17% Similarity=0.262 Sum_probs=225.3
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
.+.|++++|+|....-+|+.+. -.+.||+..+ ....+.+......|.+++|..||++|++|...|.|+|+|..+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~-~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT-RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecch-hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3689999999966666666654 4599999987 6667777778889999999999999999999999999997776677
Q ss_pred EEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCC-EEEEEcCCCeEEEEEc
Q 010871 267 RVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQ-LLFCGDAQGCIYSISM 343 (498)
Q Consensus 267 ~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~ 343 (498)
+.++.|. ++..+.|+|.++.++++|++|+.+++||+.+...+..+ .|...|.|.+|+|... ++++|+.||.|++||.
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 8888885 67789999999999999999999999999988865455 6999999999999766 7889999999999999
Q ss_pred cCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEE
Q 010871 344 ESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRAS 423 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (498)
+..+.... ...|..+|..+.+. |.|..+++++.. .+++||+.++.+ .......+...++++ .
T Consensus 184 R~~~~~v~-------elnhg~pVe~vl~l-----psgs~iasAgGn-~vkVWDl~~G~q---ll~~~~~H~KtVTcL--~ 245 (487)
T KOG0310|consen 184 RSLTSRVV-------ELNHGCPVESVLAL-----PSGSLIASAGGN-SVKVWDLTTGGQ---LLTSMFNHNKTVTCL--R 245 (487)
T ss_pred ccCCceeE-------EecCCCceeeEEEc-----CCCCEEEEcCCC-eEEEEEecCCce---ehhhhhcccceEEEE--E
Confidence 87752222 25788899999887 889999988754 899999985532 111222244444444 2
Q ss_pred EeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEe
Q 010871 424 FCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVW 492 (498)
Q Consensus 424 ~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW 492 (498)
+. .++..|++|+-|+.|++||+.+ .+.+..+. -.++|.+++.+|+++.++.|..||.+.+=
T Consensus 246 l~-----s~~~rLlS~sLD~~VKVfd~t~--~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 246 LA-----SDSTRLLSGSLDRHVKVFDTTN--YKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ee-----cCCceEeecccccceEEEEccc--eEEEEeee-cccceeeEEecCCCceEEEecccceeeee
Confidence 22 3889999999999999999877 44566554 46899999999999999999999988765
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.6e-28 Score=202.98 Aligned_cols=245 Identities=13% Similarity=0.241 Sum_probs=197.9
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCcE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSN-NQYIASSSMDKTVRVWELTKGDC 265 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~~ 265 (498)
.+.+..|+|++...+.+++++.||+++|||+..+..+++.++.|...|.++.|++. ++.++++|.|++|++|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 57899999999778899999999999999988777889999999999999999984 46788889999999999999999
Q ss_pred EEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC-CcEEEEeecCCCeEEEEEcCCC-CEEEEEcCCCeEEEEE
Q 010871 266 IRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFST-GRIIKKLVVDSEVTSMDHDHTG-QLLFCGDAQGCIYSIS 342 (498)
Q Consensus 266 ~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d 342 (498)
+.++.+|. -|...+|+|...+++++++.|+++++||++. |+.+....|...|.++.|+.-. +.+++|+.|+.|+.||
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 99999996 5679999999999999999999999999976 4444433578899999999754 5889999999999999
Q ss_pred ccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEE
Q 010871 343 MESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRA 422 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (498)
++.....+ ..+.+|.-.|..+.+++ .....|++++.|-+++|||...+...... ...+.. .....
T Consensus 220 ir~~r~pl------~eL~gh~~AVRkvk~Sp----h~~~lLaSasYDmT~riw~~~~~ds~~e~---~~~HtE--Fv~g~ 284 (311)
T KOG0277|consen 220 IRNLRTPL------FELNGHGLAVRKVKFSP----HHASLLASASYDMTVRIWDPERQDSAIET---VDHHTE--FVCGL 284 (311)
T ss_pred hhhccccc------eeecCCceEEEEEecCc----chhhHhhhccccceEEecccccchhhhhh---hhccce--EEecc
Confidence 98655332 23478888888888874 23578999999999999998743211111 001111 11223
Q ss_pred EEeeeeeccCCCEEEEEeCCCcEEEEEC
Q 010871 423 SFCPLLSLEKGEYIVAGSEDSNVYFYDL 450 (498)
Q Consensus 423 ~~~~~~~~~~~~~l~~gs~dg~I~iwd~ 450 (498)
.|++ -++.++|.++.|+.++||+.
T Consensus 285 Dws~----~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 285 DWSL----FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccc----ccCceeeecccccceeeecc
Confidence 5665 37889999999999999984
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=4.9e-27 Score=206.50 Aligned_cols=260 Identities=19% Similarity=0.319 Sum_probs=205.5
Q ss_pred ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEE
Q 010871 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVF 300 (498)
Q Consensus 222 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iw 300 (498)
..+..|..|++.|.+++.+|+.++++||+.|..-.+|++.++.....+.+|. .|.++.|+. ++.+|++|..+|.|+||
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVF 133 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEE
Confidence 3467788999999999999999999999999999999999999999999885 889999998 56899999999999999
Q ss_pred EcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCC
Q 010871 301 NFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG 379 (498)
Q Consensus 301 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~ 379 (498)
...++.....+. .-..+.-+.|+|.+..|++|+.||.+.+|.+...... +.+.+|..++++-.|. |+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~-------kv~~Gh~~~ct~G~f~-----pd 201 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC-------KVMSGHNSPCTCGEFI-----PD 201 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee-------eEecCCCCCccccccc-----CC
Confidence 999999888884 5677889999999999999999999999998764211 2247899999999888 99
Q ss_pred CcEEEEEEcCCcEEEEEccccccceeeEe-------Ee-ec----------cCCce-------eeeEEEEe---------
Q 010871 380 GPVLLTCTQDGNLSFFSVALEIQGYLTFR-------CS-LK----------LAPRV-------HSIRASFC--------- 425 (498)
Q Consensus 380 ~~~l~t~s~dg~i~iwd~~~~~~~~~~~~-------~~-~~----------~~~~~-------~~~~~~~~--------- 425 (498)
|+.++++..||+|++|+..++........ +. .. ..... ..+-.++.
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~ 281 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS 281 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence 99999999999999999987632111110 00 00 00000 00000111
Q ss_pred ---------eeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 426 ---------PLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 426 ---------~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.+.++..-.+.|+|+.||+|.|||+...+ ++..-.|..+|+.+.|-+ ..+|++++.+|.|+.||..+
T Consensus 282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~---~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST---LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDART 357 (399)
T ss_pred chhhhhhhhhcccccccchhhcccccceEEEEecccch---hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccc
Confidence 01112244678999999999999999744 445556899999999998 78999999999999999887
Q ss_pred CC
Q 010871 497 TS 498 (498)
Q Consensus 497 ~s 498 (498)
|.
T Consensus 358 G~ 359 (399)
T KOG0296|consen 358 GQ 359 (399)
T ss_pred cc
Confidence 63
No 77
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.7e-26 Score=224.41 Aligned_cols=267 Identities=16% Similarity=0.170 Sum_probs=190.4
Q ss_pred ccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC---------Cce---eEEeecCCCCeEEEEEcc-CCCEEEEEeCC
Q 010871 186 CKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP---------PKV---IKLLNGHSKDVTDFDFSS-NNQYIASSSMD 252 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~---------~~~---~~~~~~h~~~V~~l~~s~-~~~~l~s~s~d 252 (498)
|-..|.....++ ++..+++++.+.....|+...+ ++. ...+.+|.+.|.+++|+| ++++|++|+.|
T Consensus 19 ~~~~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ceeccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 344556666666 5555666666666666765431 111 124779999999999999 78899999999
Q ss_pred CcEEEEECCCC-------cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEc
Q 010871 253 KTVRVWELTKG-------DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHD 323 (498)
Q Consensus 253 g~v~iwd~~~~-------~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~ 323 (498)
++|++||+.++ ..+..+.+|. .|.+++|+|.+.++|++|+.|++|+|||+.+++.+..+. |...|.+++|+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence 99999999765 3466777774 788999999877899999999999999999999888874 78899999999
Q ss_pred CCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccce-eeEEEeEeeEcCCCcEEEEEE----cCCcEEEEEcc
Q 010871 324 HTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPV-TTVQYRSFSLLAGGPVLLTCT----QDGNLSFFSVA 398 (498)
Q Consensus 324 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~s~~~~~l~t~s----~dg~i~iwd~~ 398 (498)
|++.+|++++.|+.|++||++...... . ...|...+ ..+.|. +++..+++++ .|+.|++||++
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~v~--t-----l~~H~~~~~~~~~w~-----~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTIVS--S-----VEAHASAKSQRCLWA-----KRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcEEE--E-----EecCCCCcceEEEEc-----CCCCeEEEEecCCCCCCeEEEEeCC
Confidence 999999999999999999997543211 1 13444332 233343 7777777654 47899999998
Q ss_pred ccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEe-CCCcEEEEECCCCCccceeeec-CCCCCeEEEEEcCC
Q 010871 399 LEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGS-EDSNVYFYDLAKPKHSCVNKLQ-GHRFPVVAVAWNHG 476 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~dg~I~iwd~~~~~~~~~~~~~-~h~~~V~~l~~sp~ 476 (498)
........ .............|. +++++|++|+ .|+.|++||+.++. ++.... .+..++.+++|.|.
T Consensus 246 ~~~~p~~~----~~~d~~~~~~~~~~d-----~d~~~L~lggkgDg~Iriwdl~~~~--~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 246 KMASPYST----VDLDQSSALFIPFFD-----EDTNLLYIGSKGEGNIRCFELMNER--LTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCCceeE----eccCCCCceEEEEEc-----CCCCEEEEEEeCCCeEEEEEeeCCc--eEEEeeccCCCCCcceEeccc
Confidence 54321111 111111111112333 4899988887 59999999999865 333332 34567888999885
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.7e-27 Score=220.55 Aligned_cols=275 Identities=15% Similarity=0.230 Sum_probs=217.8
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVI 269 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 269 (498)
.+-+.|+. .+.||+|.. ..|++|+..+ +........+...|+++.|+++|++|+.|..+|.|.|||..+.+.+..+
T Consensus 180 ~nlldWss--~n~laValg-~~vylW~~~s-~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 180 LNLLDWSS--ANVLAVALG-QSVYLWSASS-GSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred hhHhhccc--CCeEEEEec-ceEEEEecCC-CceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc
Confidence 34577874 567777764 4699999988 5555555556899999999999999999999999999999999999999
Q ss_pred ec-C-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE-e-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 270 YG-V-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK-L-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 270 ~~-~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
.+ | ..+-+++|. ...+.+|+.++.|..+|++..+.... + .|...|..+.|++++.++++|+.|+.+.|||...
T Consensus 256 ~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS 332 (484)
T ss_pred cCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence 88 5 467789996 57899999999999999998876555 4 5889999999999999999999999999999843
Q ss_pred CcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE--cCCcEEEEEccccccceeeEeEeeccCCceeeeEEE
Q 010871 346 HSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT--QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRAS 423 (498)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (498)
.... ..+..|...|..+.|++. ....||+|+ .|+.|++||+.++.. ..............
T Consensus 333 ~~p~-------~~~~~H~aAVKA~awcP~----q~~lLAsGGGs~D~~i~fwn~~~g~~-------i~~vdtgsQVcsL~ 394 (484)
T KOG0305|consen 333 PEPK-------FTFTEHTAAVKALAWCPW----QSGLLATGGGSADRCIKFWNTNTGAR-------IDSVDTGSQVCSLI 394 (484)
T ss_pred cccc-------EEEeccceeeeEeeeCCC----ccCceEEcCCCcccEEEEEEcCCCcE-------ecccccCCceeeEE
Confidence 2222 224789999999999853 467788865 699999999985421 11111112222235
Q ss_pred EeeeeeccCCCEEEEE--eCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 424 FCPLLSLEKGEYIVAG--SEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 424 ~~~~~~~~~~~~l~~g--s~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
|++ ..+-|+++ ..++.|.||+..+ ...+..+.+|...|..++++|||..+++|+.|.++++|++-.
T Consensus 395 Wsk-----~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 395 WSK-----KYKELLSTHGYSENQITLWKYPS--MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EcC-----CCCEEEEecCCCCCcEEEEeccc--cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 554 66555553 4467899999998 557899999999999999999999999999999999998743
No 79
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=3e-26 Score=213.78 Aligned_cols=246 Identities=25% Similarity=0.416 Sum_probs=197.8
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 010871 225 KLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFS 303 (498)
Q Consensus 225 ~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~ 303 (498)
..+.+|.++|.+++|+|++++|++++.||.|++|++.+++....+..+. .+..+.|.+++ .++++++.+|.|++||+.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcC
Confidence 4567899999999999999999999999999999999988888888775 45599999955 788888899999999999
Q ss_pred CCcEEEEee-cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcE
Q 010871 304 TGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPV 382 (498)
Q Consensus 304 ~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~ 382 (498)
+++.+..+. +...+.++.|++++.++++++.+|.|++|++....... ....|...+.++.+. +++.+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~i~~~~~~-----~~~~~ 149 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-------TLRGHTDWVNSVAFS-----PDGTF 149 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE-------EeccCCCcEEEEEEc-----CcCCE
Confidence 887777774 66789999999998889988889999999987432211 123566778888776 88888
Q ss_pred EEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec
Q 010871 383 LLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ 462 (498)
Q Consensus 383 l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~ 462 (498)
+++++.|+.|++||++...... ........+ ....|++ +++.+++++.++.|++||+..+ ..+..+.
T Consensus 150 l~~~~~~~~i~i~d~~~~~~~~----~~~~~~~~i--~~~~~~~-----~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~ 216 (289)
T cd00200 150 VASSSQDGTIKLWDLRTGKCVA----TLTGHTGEV--NSVAFSP-----DGEKLLSSSSDGTIKLWDLSTG--KCLGTLR 216 (289)
T ss_pred EEEEcCCCcEEEEEccccccce----eEecCcccc--ceEEECC-----CcCEEEEecCCCcEEEEECCCC--ceecchh
Confidence 8888889999999997432211 111111122 2234554 8889999999999999999874 3567777
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 463 GHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 463 ~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.|...|.+++|+|++.++++++.||.|++|++.+
T Consensus 217 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 217 GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 8999999999999998999888899999999875
No 80
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1e-26 Score=198.92 Aligned_cols=299 Identities=15% Similarity=0.249 Sum_probs=230.4
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC--c---------e---eEEeecCCCCeEEEEEcc-CCCEEE
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP--K---------V---IKLLNGHSKDVTDFDFSS-NNQYIA 247 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~--~---------~---~~~~~~h~~~V~~l~~s~-~~~~l~ 247 (498)
...|.+.|+++...+..|+++++|+.||.|.|||++... + + ...-.+|.-.|..+.|.| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 355789999999999999999999999999999998532 0 1 011236888999999999 445888
Q ss_pred EEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCC--CcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcC
Q 010871 248 SSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVN--NNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDH 324 (498)
Q Consensus 248 s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~ 324 (498)
++|.|.++++||..+.+....|+-.+.|.+-+++|-. .-++++|..+-.|++-|+.+|..-+.+ +|...|.++.|+|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999999999999988899888888853 347788888999999999999999999 6999999999999
Q ss_pred CCC-EEEEEcCCCeEEEEEccCCcccccc--------cccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEE
Q 010871 325 TGQ-LLFCGDAQGCIYSISMESHSGALSR--------SHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFF 395 (498)
Q Consensus 325 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iw 395 (498)
... .|++|+.||.|++||++...+.+.. .........|.+.+.+++|. .++.++++++.|..+++|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t-----Sd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT-----SDARYLASCGTDDRIRVW 273 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec-----ccchhhhhccCccceEEe
Confidence 987 5689999999999999876443221 11112235677888888777 899999999999999999
Q ss_pred EccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcC
Q 010871 396 SVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH 475 (498)
Q Consensus 396 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp 475 (498)
+...+............-. .......... .+...++---.++.+.++.+-.+. .+..+.+|-..|.|.++-|
T Consensus 274 n~~~G~ntl~~~g~~~~n~--~~~~~~~~~~----~~s~vfv~~p~~~~lall~~~sgs--~ir~l~~h~k~i~c~~~~~ 345 (397)
T KOG4283|consen 274 NMESGRNTLREFGPIIHNQ--TTSFAVHIQS----MDSDVFVLFPNDGSLALLNLLEGS--FVRRLSTHLKRINCAAYRP 345 (397)
T ss_pred ecccCcccccccccccccc--cccceEEEee----cccceEEEEecCCeEEEEEccCce--EEEeeecccceeeEEeecC
Confidence 9987644222111111000 0011111111 134444444556889999998854 5888999988999999999
Q ss_pred CCCEEEEEeCCCeEEEeec
Q 010871 476 GENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 476 ~~~~l~s~~~Dg~i~iW~~ 494 (498)
+-+.+.+|+.|+.|..|-.
T Consensus 346 ~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 346 DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred chhhhhccccCCccccccc
Confidence 9999999999999999965
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1e-26 Score=195.75 Aligned_cols=246 Identities=19% Similarity=0.332 Sum_probs=200.7
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEE--ecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEE
Q 010871 225 KLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVI--YGVS-SQLCIRFHPVNNNFLSVGNANKEITVFN 301 (498)
Q Consensus 225 ~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~--~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd 301 (498)
+.+++|...|.+++|+.+|..|++|+.|+++.+|+++..+..... .+|. .+..++|+|....++++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 567789999999999999999999999999999999987555443 3444 7889999999999999999999999999
Q ss_pred cCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCc
Q 010871 302 FSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGP 381 (498)
Q Consensus 302 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~ 381 (498)
++.+++.........=.-+.|+|+|.++++++.|..|.+.|.+....... ......+..+.|. .+++
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~--------~~~~~e~ne~~w~-----~~nd 160 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE--------EQFKFEVNEISWN-----NSND 160 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh--------hcccceeeeeeec-----CCCC
Confidence 99999999998777777789999999999999999999999875443222 2223345555554 6677
Q ss_pred EEEEEEcCCcEEEEEccccccceeeEeEeec-cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceee
Q 010871 382 VLLTCTQDGNLSFFSVALEIQGYLTFRCSLK-LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNK 460 (498)
Q Consensus 382 ~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~ 460 (498)
+++....-|.|.|.....- +.... ......++...|.| +|+|||+|+.|..+.+||+.. ..|++.
T Consensus 161 ~Fflt~GlG~v~ILsypsL-------kpv~si~AH~snCicI~f~p-----~GryfA~GsADAlvSLWD~~E--LiC~R~ 226 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSL-------KPVQSIKAHPSNCICIEFDP-----DGRYFATGSADALVSLWDVDE--LICERC 226 (313)
T ss_pred EEEEecCCceEEEEecccc-------ccccccccCCcceEEEEECC-----CCceEeeccccceeeccChhH--hhhhee
Confidence 7777777899999876521 11111 12235556667776 999999999999999999998 778999
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 461 LQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 461 ~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
+..+.-+|+.|.|+.+|++||+|+.|..|-|=++++|
T Consensus 227 isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 227 ISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred eccccCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 9999999999999999999999999999987666665
No 82
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.3e-26 Score=197.76 Aligned_cols=296 Identities=13% Similarity=0.175 Sum_probs=209.9
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeE-Eee--cCCCCeEEEEEccCCCEEE-EEeCCCcEE
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIK-LLN--GHSKDVTDFDFSSNNQYIA-SSSMDKTVR 256 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~-~~~--~h~~~V~~l~~s~~~~~l~-s~s~dg~v~ 256 (498)
..|+||.+.|++++|+. +|++|||++.|++|+||++.+.....+ .+. -.-+.-+.+.|.||.+-++ ++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 46899999999999999 999999999999999999986221111 111 1123457899999987554 455556799
Q ss_pred EEECCCCc---EEEE--------Ee-cC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEE
Q 010871 257 VWELTKGD---CIRV--------IY-GV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDH 322 (498)
Q Consensus 257 iwd~~~~~---~~~~--------~~-~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~ 322 (498)
+|.+...+ .... +. .| -.+..+-... +..+|++++.|..|.+|+++ |+.+..+. ....-...++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 99765321 1111 11 11 1334444433 67899999999999999998 88888884 4556677889
Q ss_pred cCCCCEEEEEcCCCeEEEEEccC-CcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccc
Q 010871 323 DHTGQLLFCGDAQGCIYSISMES-HSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEI 401 (498)
Q Consensus 323 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~ 401 (498)
+|+|+++++++-.-.|++|..-. ..+.+....+...+.+|...|...+|+ ++...+++.+.||++++||++-..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-----n~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-----NSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-----CCcceeEEEecCCcEEEeeccceE
Confidence 99999999999999999998643 334444444445568999999988887 999999999999999999987432
Q ss_pred cceeeEeEe-----eccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeee-cCCCCCeEEEEEcC
Q 010871 402 QGYLTFRCS-----LKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL-QGHRFPVVAVAWNH 475 (498)
Q Consensus 402 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~-~~h~~~V~~l~~sp 475 (498)
......... .........++...+| +|+.||.... ..+++|..++++. ...+ ..|...|.+++|++
T Consensus 312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-----~g~~lA~s~g-s~l~~~~se~g~~--~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPLHAAGSEPVRLELSP-----SGDSLAVSFG-SDLKVFASEDGKD--YPELEDIHSTTISSISYSS 383 (420)
T ss_pred ecCCCchHhhcCCcchhhcCCCceEEEeCC-----CCcEEEeecC-CceEEEEcccCcc--chhHHHhhcCceeeEEecC
Confidence 211111111 1111222334555665 8998887654 5799999988652 2233 46899999999999
Q ss_pred CCCEEEEEeCCCeEEEee
Q 010871 476 GENLLASSDLYGIVIVWK 493 (498)
Q Consensus 476 ~~~~l~s~~~Dg~i~iW~ 493 (498)
+|++++|+| |..+++..
T Consensus 384 ~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 384 DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CCcEEeeec-ceeeeeec
Confidence 999999998 56777764
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=210.91 Aligned_cols=243 Identities=20% Similarity=0.278 Sum_probs=201.5
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECC
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELT 261 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~ 261 (498)
|...+..|.++.|-. ||.+||+|+..|.|+|+|..+ ...++.+.+|+.+|..+.|+|++ +.|++|+.|+.+++||+.
T Consensus 64 ~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred HHhhccceeEEEeec-CCeEEEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 344477899999998 999999999999999999665 67888999999999999999965 678889999999999999
Q ss_pred CCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-cEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEE
Q 010871 262 KGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-RIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 262 ~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
+......+.+|. .|.|.+|+|.+++++++|+.||.|++||++.. ..+..+.|..+|..+.+.|.|..|++++ ...|+
T Consensus 142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vk 220 (487)
T KOG0310|consen 142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVK 220 (487)
T ss_pred CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEE
Confidence 998766788885 67899999999999999999999999999987 7888899999999999999999988876 45799
Q ss_pred EEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceee
Q 010871 340 SISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHS 419 (498)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 419 (498)
+||+-........ ...|...|+|+.+. .++..|++++-|+.+++||+.+- .........+++-.
T Consensus 221 VWDl~~G~qll~~------~~~H~KtVTcL~l~-----s~~~rLlS~sLD~~VKVfd~t~~-----Kvv~s~~~~~pvLs 284 (487)
T KOG0310|consen 221 VWDLTTGGQLLTS------MFNHNKTVTCLRLA-----SDSTRLLSGSLDRHVKVFDTTNY-----KVVHSWKYPGPVLS 284 (487)
T ss_pred EEEecCCceehhh------hhcccceEEEEEee-----cCCceEeecccccceEEEEccce-----EEEEeeecccceee
Confidence 9999744333222 24488999999987 78899999999999999996532 33334444444433
Q ss_pred eEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 420 IRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
+ +.+| +++.++.|..||.+-+-+..
T Consensus 285 i--avs~-----dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 285 I--AVSP-----DDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred E--EecC-----CCceEEEecccceeeeehhh
Confidence 3 5554 99999999999988777443
No 84
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.3e-25 Score=218.76 Aligned_cols=208 Identities=18% Similarity=0.249 Sum_probs=165.9
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC------ceeEEeecCCCCeEEEEEccCC-CEEEEEeCCCc
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP------KVIKLLNGHSKDVTDFDFSSNN-QYIASSSMDKT 254 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~------~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~ 254 (498)
.+.||.+.|++++|+|.++.+||+|+.||+|+|||+.+.. ..+..+.+|...|.+++|+|++ .+|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999677899999999999999997632 3567889999999999999985 69999999999
Q ss_pred EEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCC-CeEEEEEcCCCCEEEE
Q 010871 255 VRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDS-EVTSMDHDHTGQLLFC 331 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~-~i~~l~~~~~~~~l~~ 331 (498)
|+|||+.+++.+..+..|. .+.+++|+|+ +.+|++++.|+.|++||+++++.+..+. |.. .+..+.|.+++..+++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 9999999999998888774 6889999995 5789999999999999999999888774 443 3456788888877776
Q ss_pred Ec----CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEcccc
Q 010871 332 GD----AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALE 400 (498)
Q Consensus 332 ~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~ 400 (498)
++ .|+.|++||++.......... ......+.... +++++++|++++ .|+.|++||+..+
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~-----~d~~~~~~~~~-----~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVD-----LDQSSALFIPF-----FDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEec-----cCCCCceEEEE-----EcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 53 478999999975432221100 11122222223 348999999887 4999999999864
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.4e-25 Score=180.35 Aligned_cols=291 Identities=15% Similarity=0.216 Sum_probs=214.3
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCC-------------C-CceeEEeecCCCCeEEEEEccCCCEEEEEeCC
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-------------P-PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD 252 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~-------------~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d 252 (498)
...|.+++|+| .|.+.|+|+...+++|..... + ....+.-+.|.+.|.|.+|+|+|.+|++|+.|
T Consensus 32 sqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 32 SQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred hhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 56899999999 999999999999999876432 0 11223345699999999999999999999999
Q ss_pred CcEEEEECCCCcEE-----EEEecC-CCeEEEEEEcC---CCcEEEEEe-CCCcEEEEEcCCCcEEEEe-ecCCCeEEEE
Q 010871 253 KTVRVWELTKGDCI-----RVIYGV-SSQLCIRFHPV---NNNFLSVGN-ANKEITVFNFSTGRIIKKL-VVDSEVTSMD 321 (498)
Q Consensus 253 g~v~iwd~~~~~~~-----~~~~~~-~~v~~i~~~~~---~~~~l~~g~-~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~ 321 (498)
.+|++.-++...+. ..+.-| +.+..++|..+ ++.+|++++ .|..|++-|..+|+....+ .|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal- 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL- 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence 99999876543321 233334 56788888754 345666654 5678888899999988888 577778776
Q ss_pred EcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccc
Q 010871 322 HDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEI 401 (498)
Q Consensus 322 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~ 401 (498)
++-++-.+++|+.|.+|++||++.......... ..|.....+-....++..|.|++|++|-.|....+||++.+.
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~-----~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN-----DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccC-----cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc
Confidence 345678999999999999999987655443322 223333333333444455999999999999999999998652
Q ss_pred cceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC--ccceeeecCCCCCeEEEEEcCCCCE
Q 010871 402 QGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK--HSCVNKLQGHRFPVVAVAWNHGENL 479 (498)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~ 479 (498)
. +.....+...+..+ .|+| ...|+++++.|..|++-|++..- ..++.....|...+..+.|+|..--
T Consensus 265 ~----iq~f~phsadir~v--rfsp-----~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~s 333 (350)
T KOG0641|consen 265 M----IQRFHPHSADIRCV--RFSP-----GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFS 333 (350)
T ss_pred e----eeeeCCCccceeEE--EeCC-----CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccce
Confidence 1 11112222222222 5555 88999999999999999997532 2234455679999999999999988
Q ss_pred EEEEeCCCeEEEeecC
Q 010871 480 LASSDLYGIVIVWKRA 495 (498)
Q Consensus 480 l~s~~~Dg~i~iW~~~ 495 (498)
+++.+.|.++.+|-+.
T Consensus 334 fisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 334 FISSSADKTATLWALN 349 (350)
T ss_pred eeeccCcceEEEeccC
Confidence 9999999999999875
No 86
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=206.58 Aligned_cols=251 Identities=18% Similarity=0.302 Sum_probs=195.2
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC---cEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCc
Q 010871 221 PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG---DCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKE 296 (498)
Q Consensus 221 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~ 296 (498)
.+..+++..|++.|.-+.|+++|++|||++.|.+..+|++... +..+++.+| .+|..+.|+|++ ++|++++.+..
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~ 292 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEV 292 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHh
Confidence 3456678899999999999999999999999999999997644 346667777 588899999965 67777778888
Q ss_pred EEEEEcCCCcEEEEeecC--CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEe
Q 010871 297 ITVFNFSTGRIIKKLVVD--SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSF 374 (498)
Q Consensus 297 i~iwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 374 (498)
+.+||+.+|.....+.+. ..+.+++|.|||..+++|+.|+.|..||++......-. ......|.++++
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~-------gvr~~~v~dlai--- 362 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE-------GVRDPKVHDLAI--- 362 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc-------ccccceeEEEEE---
Confidence 999999999999888654 88999999999999999999999999999865422111 111123444444
Q ss_pred eEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC
Q 010871 375 SLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 375 ~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~ 454 (498)
++||+++++.+.|..|++|+....... ........++. ...+.+++++++.-.+..|++||+..
T Consensus 363 --t~Dgk~vl~v~~d~~i~l~~~e~~~dr-----~lise~~~its-------~~iS~d~k~~LvnL~~qei~LWDl~e-- 426 (519)
T KOG0293|consen 363 --TYDGKYVLLVTVDKKIRLYNREARVDR-----GLISEEQPITS-------FSISKDGKLALVNLQDQEIHLWDLEE-- 426 (519)
T ss_pred --cCCCcEEEEEecccceeeechhhhhhh-----ccccccCceeE-------EEEcCCCcEEEEEcccCeeEEeecch--
Confidence 499999999999999999998754221 11112222322 33345999999999999999999996
Q ss_pred ccceeeecCCCCC--eEEEEEc-CCCCEEEEEeCCCeEEEeecCCCC
Q 010871 455 HSCVNKLQGHRFP--VVAVAWN-HGENLLASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 455 ~~~~~~~~~h~~~--V~~l~~s-p~~~~l~s~~~Dg~i~iW~~~~~s 498 (498)
...+..+.||... |..-||- .+..++++|+.|+.|+||+...++
T Consensus 427 ~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 427 NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK 473 (519)
T ss_pred hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc
Confidence 5578889999765 4444665 355899999999999999988763
No 87
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=3.4e-26 Score=196.32 Aligned_cols=249 Identities=16% Similarity=0.233 Sum_probs=201.3
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEEC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWEL 260 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~ 260 (498)
.++||+++|..+.|.+ ++..|++++.|.+|+.||+++ ++..+.+++|..-|.++.-+.-| .++.|++.||++++||+
T Consensus 85 ~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~ 162 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDI 162 (338)
T ss_pred eeccccceeEeeeecc-CCCEEEEecCCceEEEEeccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEee
Confidence 4579999999999999 999999999999999999999 89999999999999999955555 46678999999999999
Q ss_pred CCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEE
Q 010871 261 TKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 261 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
++..+++++.....+.++.|... ...+++|+-|+.|++||++.+.....+ +|...|+.+..+++|.++.+-+-|.+++
T Consensus 163 R~k~~~~t~~~kyqltAv~f~d~-s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvr 241 (338)
T KOG0265|consen 163 RKKEAIKTFENKYQLTAVGFKDT-SDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVR 241 (338)
T ss_pred cccchhhccccceeEEEEEeccc-ccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEE
Confidence 99999999988889999999874 467888999999999999999999888 6899999999999999999999999999
Q ss_pred EEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceee
Q 010871 340 SISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHS 419 (498)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 419 (498)
+||++......... .......|.-.++.+ ..+++|++..+.+|+.|..+++||.... .....++++...
T Consensus 242 vwd~rp~~p~~R~v-~if~g~~hnfeknlL---~cswsp~~~~i~ags~dr~vyvwd~~~r-------~~lyklpGh~gs 310 (338)
T KOG0265|consen 242 VWDVRPFAPSQRCV-KIFQGHIHNFEKNLL---KCSWSPNGTKITAGSADRFVYVWDTTSR-------RILYKLPGHYGS 310 (338)
T ss_pred EEEecccCCCCceE-EEeecchhhhhhhcc---eeeccCCCCccccccccceEEEeecccc-------cEEEEcCCccee
Confidence 99997543222100 000011222222222 3456699999999999999999998732 344445555444
Q ss_pred eE-EEEeeeeeccCCCEEEEEeCCCcEEEEE
Q 010871 420 IR-ASFCPLLSLEKGEYIVAGSEDSNVYFYD 449 (498)
Q Consensus 420 ~~-~~~~~~~~~~~~~~l~~gs~dg~I~iwd 449 (498)
+. ..|+| ...+|.+++.|.+|++=.
T Consensus 311 vn~~~Fhp-----~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 311 VNEVDFHP-----TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred EEEeeecC-----CCcEEEEeccCceeEeec
Confidence 33 36666 899999999999998743
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.8e-25 Score=190.20 Aligned_cols=253 Identities=13% Similarity=0.193 Sum_probs=197.6
Q ss_pred ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeC--CCcEE
Q 010871 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNA--NKEIT 298 (498)
Q Consensus 222 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~--dg~i~ 298 (498)
+..+.+..-.+.|.+|.|+++|.+|++++.|.+++|||..++++++++..+. ++-.++|.... +.++.++. |.+|+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC-ceEEEccCCCCCceE
Confidence 3445566677899999999999999999999999999999999999998774 66777777644 45555554 88999
Q ss_pred EEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEc
Q 010871 299 VFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLL 377 (498)
Q Consensus 299 iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s 377 (498)
..++.+.+.++.+ +|...|++++.+|-++.+++++.|++|++||++...+....... ..+ ..+++
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-------~~p-------i~AfD 149 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-------GRP-------IAAFD 149 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-------CCc-------ceeEC
Confidence 9999999999999 69999999999999999999999999999999865544322111 111 12344
Q ss_pred CCCcEEEEEEcCCcEEEEEccccccceee-EeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCcc
Q 010871 378 AGGPVLLTCTQDGNLSFFSVALEIQGYLT-FRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHS 456 (498)
Q Consensus 378 ~~~~~l~t~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~ 456 (498)
|.|-++|++.....|++||++.-.++... +.... ... ..|..+.+++||++|+.+...+.+++.|.-+|.
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--~~~-----~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-- 220 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD--NDE-----AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-- 220 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--CCc-----cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc--
Confidence 99999999998889999999975443322 21111 122 244444555599999999999999999999865
Q ss_pred ceeeecCCCCC---eEEEEEcCCCCEEEEEeCCCeEEEeecCCCC
Q 010871 457 CVNKLQGHRFP---VVAVAWNHGENLLASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 457 ~~~~~~~h~~~---V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~s 498 (498)
....+.++... -...+|+||++++++|+.||+|.+|+++++.
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 56666665433 2567899999999999999999999998763
No 89
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=8.6e-25 Score=211.18 Aligned_cols=296 Identities=16% Similarity=0.238 Sum_probs=226.5
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVI 269 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 269 (498)
|+++.--+.--+.++.|+.+|.+.||++.+ ++.+.+++++...|+++.-+|-=..++.|..+|+|.++++..++.+.++
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt-~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRT-GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeEecchhheeeEEEeecCCcEEEEEecc-CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 777753322345789999999999999999 8999999999999999999998889999999999999999999999999
Q ss_pred ecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee--cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCC
Q 010871 270 YGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV--VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESH 346 (498)
Q Consensus 270 ~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~ 346 (498)
+.. +.|..+.|..+|..++++|+..|.+.+||++..+.+..+. |.+.|..+.|.+....+++++.|..+++|-.++.
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 987 8999999999999999999999999999999888877774 7789999999999999999999998888766532
Q ss_pred cccccccccccccCCCccceeeEEE-------------------------------------------------------
Q 010871 347 SGALSRSHRHRTTGKRKCPVTTVQY------------------------------------------------------- 371 (498)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~i~~~~~------------------------------------------------------- 371 (498)
.+... .. +.-.+|..|..++.|
T Consensus 321 dg~pR-~L--R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 321 DGVPR-LL--RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred CCcch-he--eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 22100 00 000122222222221
Q ss_pred ------------------------------------------------------eEeeEcCCCcEEEEEEcCCcEEEEEc
Q 010871 372 ------------------------------------------------------RSFSLLAGGPVLLTCTQDGNLSFFSV 397 (498)
Q Consensus 372 ------------------------------------------------------~~~~~s~~~~~l~t~s~dg~i~iwd~ 397 (498)
.+++.++-|++.+.|+..|.|-+|++
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm 477 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM 477 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence 34555677888888888888888888
Q ss_pred cccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC-----------------------
Q 010871 398 ALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK----------------------- 454 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~----------------------- 454 (498)
..+.... .+.....+...+..+. ...-++.+++++.+|.+.+||..+..
T Consensus 478 QSGi~r~-sf~~~~ah~~~V~gla-------~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 478 QSGIHRK-SFGDSPAHKGEVTGLA-------VDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLL 549 (910)
T ss_pred ccCeeec-ccccCccccCceeEEE-------ecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhh
Confidence 7652210 0000112223333332 22346779999999999999987531
Q ss_pred ----------------ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 455 ----------------HSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 455 ----------------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
...++.+.||...|++++|||||++|++++.|++|++||+.++
T Consensus 550 a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred hhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 1234567799999999999999999999999999999999875
No 90
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.3e-25 Score=212.94 Aligned_cols=287 Identities=21% Similarity=0.305 Sum_probs=221.9
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEEcCCCCce--eEEeecCCCCeEEEEEccC-----------CCEEEEEeCCCcEEE
Q 010871 191 TILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV--IKLLNGHSKDVTDFDFSSN-----------NQYIASSSMDKTVRV 257 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~--~~~~~~h~~~V~~l~~s~~-----------~~~l~s~s~dg~v~i 257 (498)
.++.|++ ..+.|.+...|..++|||+.+..+. ...+--|...|+.+.-.|- ...+++|+.|++|++
T Consensus 328 IA~~Fde-t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 328 IACQFDE-TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eEEEecC-CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 4678998 7889999999999999999874433 3344569999998877661 125899999999999
Q ss_pred EECCCCc---EEE-----------------------------------EEecCCCeEEEEEEcCCCcEEEEEeCCCcEEE
Q 010871 258 WELTKGD---CIR-----------------------------------VIYGVSSQLCIRFHPVNNNFLSVGNANKEITV 299 (498)
Q Consensus 258 wd~~~~~---~~~-----------------------------------~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~i 299 (498)
||+..+. ..+ ++....++.+++.+| ++++|++|...|.++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRV 485 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEE
Confidence 9998531 110 001123577999999 5689999999999999
Q ss_pred EEcCCCcEEEEe-ecCCCeEEEEEcCC---CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEE----
Q 010871 300 FNFSTGRIIKKL-VVDSEVTSMDHDHT---GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQY---- 371 (498)
Q Consensus 300 wd~~~~~~~~~~-~~~~~i~~l~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 371 (498)
|++...+....+ .|+..|.|+.++.. .++|++++.|..|++||+...-... ....+|...|+++.|
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~------qtld~HSssITsvKFa~~g 559 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV------QTLDGHSSSITSVKFACNG 559 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh------hhhcccccceeEEEEeecC
Confidence 999888777766 59999999999863 4689999999999999986433222 223567777777766
Q ss_pred ----------------------------------------eEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEee
Q 010871 372 ----------------------------------------RSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSL 411 (498)
Q Consensus 372 ----------------------------------------~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~ 411 (498)
..+...|..+++++++.|..|+||++..+.+.. .++..
T Consensus 560 ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k-~FKgs- 637 (1080)
T KOG1408|consen 560 LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK-SFKGS- 637 (1080)
T ss_pred CceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee-eeccc-
Confidence 234555788899999999999999998764321 22222
Q ss_pred ccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 010871 412 KLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIV 491 (498)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~i 491 (498)
.......+.....| .|.|||+...|.++.++|..+ .+++..+.||...|+.+.|.+|.+.|++.+.||.|.|
T Consensus 638 -~~~eG~lIKv~lDP-----SgiY~atScsdktl~~~Df~s--gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 638 -RDHEGDLIKVILDP-----SGIYLATSCSDKTLCFVDFVS--GECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFV 709 (1080)
T ss_pred -ccCCCceEEEEECC-----CccEEEEeecCCceEEEEecc--chhhhhhcCcchheeeeeecccchhheeecCCceEEE
Confidence 22223344445555 899999999999999999999 4589999999999999999999999999999999999
Q ss_pred eecC
Q 010871 492 WKRA 495 (498)
Q Consensus 492 W~~~ 495 (498)
|.+.
T Consensus 710 W~lp 713 (1080)
T KOG1408|consen 710 WKLP 713 (1080)
T ss_pred EECc
Confidence 9975
No 91
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2e-25 Score=219.37 Aligned_cols=245 Identities=22% Similarity=0.325 Sum_probs=199.6
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
...|.||.+.|++++|.. .+++|++|+.|.+++|||..+ +.+...+.+|...|.++...+ .++++|+.|.+|++|+
T Consensus 242 ~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s-g~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~ 317 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST-GECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWD 317 (537)
T ss_pred EeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC-CcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEe
Confidence 345899999999999987 789999999999999999888 999999999999999999754 4888999999999999
Q ss_pred CCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCe
Q 010871 260 LTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGC 337 (498)
Q Consensus 260 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~ 337 (498)
++++.++..+.+| ..|.++... +.++++|+.|++|++||+.+++++..+ +|...|.++.+... ..+++|+.|+.
T Consensus 318 v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 318 VTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT 393 (537)
T ss_pred ccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc
Confidence 9999999999966 577888885 579999999999999999999999999 59999999988766 89999999999
Q ss_pred EEEEEccCCc-ccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCC-
Q 010871 338 IYSISMESHS-GALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAP- 415 (498)
Q Consensus 338 i~i~d~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~- 415 (498)
|++||++... .. ..+..|..-+..+. ..++.|++++.|++|++||...+.... ....
T Consensus 394 IkvWdl~~~~~c~-------~tl~~h~~~v~~l~-------~~~~~Lvs~~aD~~Ik~WD~~~~~~~~-------~~~~~ 452 (537)
T KOG0274|consen 394 IKVWDLRTKRKCI-------HTLQGHTSLVSSLL-------LRDNFLVSSSADGTIKLWDAEEGECLR-------TLEGR 452 (537)
T ss_pred eEeecCCchhhhh-------hhhcCCcccccccc-------cccceeEeccccccEEEeecccCceee-------eeccC
Confidence 9999998763 22 22366777776665 458999999999999999988653211 1111
Q ss_pred ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeee
Q 010871 416 RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL 461 (498)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~ 461 (498)
+...+. .... ....+++++.||.+++||+.++. +...+
T Consensus 453 ~~~~v~-~l~~-----~~~~il~s~~~~~~~l~dl~~~~--~~~~l 490 (537)
T KOG0274|consen 453 HVGGVS-ALAL-----GKEEILCSSDDGSVKLWDLRSGT--LIRTL 490 (537)
T ss_pred CcccEE-Eeec-----CcceEEEEecCCeeEEEecccCc--hhhhh
Confidence 111111 1111 24789999999999999999854 44444
No 92
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9e-26 Score=204.25 Aligned_cols=289 Identities=16% Similarity=0.238 Sum_probs=220.8
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC-CceeEEeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCc
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP-PKVIKLLNGHSKDVTDFDFSSNNQ-YIASSSMDKTVRVWELTKGD 264 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~~~~~ 264 (498)
.++|++|.|+| ...+|++|+.||+++||.++.. ...++.+.--..+|.+.+|.|+|. .+++++....+..||+++.+
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 57899999999 9999999999999999999752 234555555678999999999998 89999999999999999886
Q ss_pred EEEE--EecCC--CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q 010871 265 CIRV--IYGVS--SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYS 340 (498)
Q Consensus 265 ~~~~--~~~~~--~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i 340 (498)
.... ..++. .+.....++++ ++|+..+..|.|.+....+++.+..++..+.|..++|+.+++.|++.+.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 5433 33333 45567778855 6888888999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeee
Q 010871 341 ISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSI 420 (498)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
||++......... ..+.| .-..++.++++.+|++|+..|.|.|||..+..... ..+....+..+
T Consensus 371 ~nl~~~~~~~rf~--------D~G~v---~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~-----~PkPik~~dNL 434 (514)
T KOG2055|consen 371 WNLRQNSCLHRFV--------DDGSV---HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST-----NPKPIKTVDNL 434 (514)
T ss_pred EecCCcceEEEEe--------ecCcc---ceeeeeecCCCceEEeccCcceEEEeccchhhccC-----CCCchhhhhhh
Confidence 9998763322211 11222 22344556899999999999999999976431110 00111122233
Q ss_pred EEEEeeeeeccCCCEEEEEeC--CCcEEEEECCCCCccceeeecC---CCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 421 RASFCPLLSLEKGEYIVAGSE--DSNVYFYDLAKPKHSCVNKLQG---HRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~gs~--dg~I~iwd~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
...++.+.++++.++||.+|. +..+++-.+.+. .....+.. .-+.|+||+|+|.+.+||.|..+|.|.+|.+.
T Consensus 435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~--TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC--TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred heeeeeeeeCcchhhhhhhhhccccceEEEeccce--eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 345555666669999998876 467888888762 23333332 34569999999999999999999999999974
No 93
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=7.3e-25 Score=216.17 Aligned_cols=210 Identities=18% Similarity=0.249 Sum_probs=162.6
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC-------ceeEEeecCCCCeEEEEEccCCCE-EEEEeCC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP-------KVIKLLNGHSKDVTDFDFSSNNQY-IASSSMD 252 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~-------~~~~~~~~h~~~V~~l~~s~~~~~-l~s~s~d 252 (498)
..+.+|.+.|.+++|+|.++.+||+|+.||+|+|||+.+.. .....+.+|...|.+++|+|++.. |++++.|
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 45789999999999999558899999999999999997532 234567899999999999999875 5789999
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeE-----EEEEcCCC
Q 010871 253 KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVT-----SMDHDHTG 326 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~-----~l~~~~~~ 326 (498)
++|+|||+.+++.+..+..+..+.+++|+|+ +.+|++++.|+.|+|||+++++.+..+. |.+.+. ...|++++
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~Slswspd-G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNIK-GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECCC-CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence 9999999999988888877778999999995 5688888899999999999999988874 555433 23456888
Q ss_pred CEEEEEcCCC----eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 327 QLLFCGDAQG----CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 327 ~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
.+|++++.++ .|++||++.....+... ....+.+.+..... .+++.++++|+.|+.|++|++..+
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~----~ld~~~~~L~p~~D-----~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSALVTM----SIDNASAPLIPHYD-----ESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCceEEE----EecCCccceEEeee-----CCCCCEEEEEECCCeEEEEEccCC
Confidence 8888877664 79999997533222110 01112222222211 256889999999999999999754
No 94
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2.8e-24 Score=202.94 Aligned_cols=274 Identities=15% Similarity=0.144 Sum_probs=195.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCcEEEEEecCCCeEEE
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYI-ASSSMDKTVRVWELTKGDCIRVIYGVSSQLCI 278 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i 278 (498)
+.++++++.|+.|++||+.+ ++....+..|.. +.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+..+..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t-~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTAT-LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCC-CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEE
Confidence 35788999999999999987 677777776544 6789999999876 56778899999999999888877766667788
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCC-eEEEEEccCCccccccccccc
Q 010871 279 RFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQG-CIYSISMESHSGALSRSHRHR 357 (498)
Q Consensus 279 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~ 357 (498)
.|+|++..+++++..++.|++||+.+++.+..+.....+.+++|+|++.+++++..++ .+.+||........ ..
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~--~~--- 153 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD--NV--- 153 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE--EE---
Confidence 9999776566666678999999999988888877666788999999999999888765 46677765432111 00
Q ss_pred ccCCCccceeeEEEeEeeEcCCCcEEEEE-EcCCcEEEEEccccccceeeEeEee--ccCCceeeeEEEEeeeeeccCCC
Q 010871 358 TTGKRKCPVTTVQYRSFSLLAGGPVLLTC-TQDGNLSFFSVALEIQGYLTFRCSL--KLAPRVHSIRASFCPLLSLEKGE 434 (498)
Q Consensus 358 ~~~~~~~~i~~~~~~~~~~s~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 434 (498)
. .......+ .+++++.+|+++ ..++.|++||+.+..... ...... ............|+| +++
T Consensus 154 --~-~~~~~~~~-----~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~s~-----dg~ 219 (300)
T TIGR03866 154 --L-VDQRPRFA-----EFTADGKELWVSSEIGGTVSVIDVATRKVIK-KITFEIPGVHPEAVQPVGIKLTK-----DGK 219 (300)
T ss_pred --E-cCCCccEE-----EECCCCCEEEEEcCCCCEEEEEEcCcceeee-eeeecccccccccCCccceEECC-----CCC
Confidence 0 11122333 344999988655 469999999998642211 000000 000111222234454 898
Q ss_pred EEEE-EeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEE-eCCCeEEEeecCCC
Q 010871 435 YIVA-GSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASS-DLYGIVIVWKRAKT 497 (498)
Q Consensus 435 ~l~~-gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~Dg~i~iW~~~~~ 497 (498)
++++ .+.++.|.+||+.+++ .+..+ .+...+.+++|+|++++|+++ +.+|.|++||++++
T Consensus 220 ~~~~~~~~~~~i~v~d~~~~~--~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 220 TAFVALGPANRVAVVDAKTYE--VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCc--EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 8554 4556789999998754 33333 244579999999999999876 56899999999875
No 95
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=209.64 Aligned_cols=289 Identities=17% Similarity=0.236 Sum_probs=209.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCC-----ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE--Eec
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPP-----KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV--IYG 271 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~-----~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~ 271 (498)
...+||.+..||.|.++|..... ..+.....|.+.|..+.|.|....|++++.|.++++||+.+.+++.. +.+
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 34589999999999999987521 12345668999999999999767899999999999999999988776 667
Q ss_pred CC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc--------------------EEEEe--------ecCCCeEE---
Q 010871 272 VS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR--------------------IIKKL--------VVDSEVTS--- 319 (498)
Q Consensus 272 ~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~--------------------~~~~~--------~~~~~i~~--- 319 (498)
|. .+.+++|.|.+...+++|+.||.|.|||++-.. ....+ .+...|.+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 74 788999999999999999999999999986322 00000 02233444
Q ss_pred EEEcCCCCEEEEEcC-CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 320 MDHDHTGQLLFCGDA-QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 320 l~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
+.+..|...|++++. |+.|++||++........... ....-+...-..+.+..+.....|.+|++.+.|+.|++|++.
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~-~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~ 301 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR-GSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR 301 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCC-cccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence 445577788888777 999999999876654432211 111222223345555666666889999999999999999998
Q ss_pred ccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCC-
Q 010871 399 LEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE- 477 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~- 477 (498)
........ +..........+....+ +++.++++|+.|...++|.+.+.+. ....+.+|.-.|++++|.|..
T Consensus 302 s~s~sP~~--~~sg~~~~sf~vks~lS-----pd~~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~eVt~V~w~pS~~ 373 (720)
T KOG0321|consen 302 SLSISPVA--EFSGKLNSSFYVKSELS-----PDDCSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTREVTTVRWLPSAT 373 (720)
T ss_pred ccCcCchh--hccCcccceeeeeeecC-----CCCceEeccCCCcceeeeeecCccC-ChhhhhCcceEEEEEeeccccC
Confidence 54221110 00001111111222333 4999999999999999999998754 566788999999999998743
Q ss_pred CEEEEEeCCCeEEEeecCC
Q 010871 478 NLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 478 ~~l~s~~~Dg~i~iW~~~~ 496 (498)
.-+++++.|-+++||++..
T Consensus 374 t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 374 TPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred CCceeeccCcceEEEeccC
Confidence 3477779999999999864
No 96
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=3.9e-25 Score=209.52 Aligned_cols=279 Identities=16% Similarity=0.208 Sum_probs=217.0
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCce-eEEeecCCCCeEE-EEEcc-CCCEEEEEeCCCcE
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV-IKLLNGHSKDVTD-FDFSS-NNQYIASSSMDKTV 255 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~-~~~~~~h~~~V~~-l~~s~-~~~~l~s~s~dg~v 255 (498)
+.+.+.||...|..+++.+ +..++++|.||++++|+-....-. ...+.+|.+-|.+ +++.+ ++-.|++|+.|++|
T Consensus 6 ls~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eEEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 4678999999999999864 568999999999999998653322 3567888888888 88875 44579999999999
Q ss_pred EEEECCCCcEEEEEecCCC-eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEc
Q 010871 256 RVWELTKGDCIRVIYGVSS-QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~ 333 (498)
.+|......++.++.+|.. |.++.... . ..+++|+.|.++++|-. +++...+ .|...|+++...|++ .+++|+
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~-~-~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGE-D-GTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCC-c-CceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEecc
Confidence 9999999999999999974 54555444 3 34899999999999986 4444445 699999999999987 899999
Q ss_pred CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeecc
Q 010871 334 AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKL 413 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 413 (498)
.|..|++|.-.. . .+.+.+|...|..+.+. ++..|++++.||.|++|++... .+.....+
T Consensus 159 aDKtIklWk~~~----~-----l~tf~gHtD~VRgL~vl------~~~~flScsNDg~Ir~w~~~ge-----~l~~~~gh 218 (745)
T KOG0301|consen 159 ADKTIKLWKGGT----L-----LKTFSGHTDCVRGLAVL------DDSHFLSCSNDGSIRLWDLDGE-----VLLEMHGH 218 (745)
T ss_pred CcceeeeccCCc----h-----hhhhccchhheeeeEEe------cCCCeEeecCCceEEEEeccCc-----eeeeeecc
Confidence 999999996421 1 12347899999999885 4667999999999999999533 12222222
Q ss_pred CCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 414 APRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
...+..+. .. .++..|+++++|++++||+.. .+.+.+.-....|+++.+-++|. |++|+.||.||||.
T Consensus 219 tn~vYsis--~~-----~~~~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 219 TNFVYSIS--MA-----LSDGLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred ceEEEEEE--ec-----CCCCeEEEecCCceEEEeecC----ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 33333332 22 378999999999999999987 35666665566899999988887 56788899999998
Q ss_pred cCC
Q 010871 494 RAK 496 (498)
Q Consensus 494 ~~~ 496 (498)
.++
T Consensus 287 ~~k 289 (745)
T KOG0301|consen 287 VDK 289 (745)
T ss_pred ecc
Confidence 764
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=3.9e-26 Score=203.83 Aligned_cols=248 Identities=17% Similarity=0.261 Sum_probs=202.9
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
.+..|.|..++|+.++|.+ ++..+++++.|+.+++|++.. .+...+|.||++.|+++.|......+++|+.|.+|++|
T Consensus 211 ~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDS-LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeeccc-hhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 4557888899999999999 889999999999999999998 88999999999999999999877779999999999999
Q ss_pred ECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 259 ELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 259 d~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
|+....|.+++...+.+..++.. ...+++|..|+.|++||+++..+.......+.|+++..++++..+++.+.|..+
T Consensus 289 Dl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl 365 (459)
T KOG0288|consen 289 DLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTL 365 (459)
T ss_pred hhhhhheeccccccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCce
Confidence 99999999988877777777765 467899999999999999999999999988899999999999999999999999
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCcee
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVH 418 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
.++|++.......... .+.-.+-.|....|||++.|+++|+.||.|+||++.++... ......... ..
T Consensus 366 ~viDlRt~eI~~~~sA--------~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE---~~l~~s~s~-~a 433 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSA--------EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE---KVLSLSTSN-AA 433 (459)
T ss_pred eeeecccccEEEEeec--------cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE---EEeccCCCC-cc
Confidence 9999976543322211 11112223555566699999999999999999999866322 111111111 12
Q ss_pred eeEEEEeeeeeccCCCEEEEEeCCCcEEEE
Q 010871 419 SIRASFCPLLSLEKGEYIVAGSEDSNVYFY 448 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~gs~dg~I~iw 448 (498)
...+.|+| .|.++++++.++.+.+|
T Consensus 434 I~s~~W~~-----sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 434 ITSLSWNP-----SGSGLLSADKQKAVTLW 458 (459)
T ss_pred eEEEEEcC-----CCchhhcccCCcceEec
Confidence 33447776 89999999999999998
No 98
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=5.4e-25 Score=199.11 Aligned_cols=301 Identities=19% Similarity=0.236 Sum_probs=225.6
Q ss_pred eeeecccccEEEEEEecCCC-CEEEEEeCCCcEEEEEcCC---CCceeEEeecCCCCeEEEEEccCC-CEEEEEeCCCcE
Q 010871 181 CIFDQCKAAVTILKFGHMSS-DLLAYGASDGTLTVCTVSD---PPKVIKLLNGHSKDVTDFDFSSNN-QYIASSSMDKTV 255 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~-~~lasg~~dg~i~iwd~~~---~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~v 255 (498)
....-|.++|++++|+|... +++|+|+.-|+|-+||+.+ ...-+..+..|.++|.+|.|+|.+ ..+++.|.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 35566789999999999555 6899999999999999952 234467788999999999999965 689999999999
Q ss_pred EEEECCCCcEEEEEec--CC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE-EEEe-ecCCCeEEEEEcCCCC-EE
Q 010871 256 RVWELTKGDCIRVIYG--VS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI-IKKL-VVDSEVTSMDHDHTGQ-LL 329 (498)
Q Consensus 256 ~iwd~~~~~~~~~~~~--~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~-~~~~~i~~l~~~~~~~-~l 329 (498)
++-|++++..-..+.. .. ....+.|+.++...+ .+..=|...+||++++.. ...+ -|...|.+++++|... +|
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 9999997743332222 22 334667777554444 455556999999998765 3333 4777999999999876 78
Q ss_pred EEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc---ccccceee
Q 010871 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA---LEIQGYLT 406 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~---~~~~~~~~ 406 (498)
++++.|++.+|||++....... +......|...|.+..|+ |.+..|+|.+.|..|+|||.. ........
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~s---p~lst~~HrrsV~sAyFS-----Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKAS---PFLSTLPHRRSVNSAYFS-----PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred eecccCcceeeeehhhhcCCCC---cceecccccceeeeeEEc-----CCCCceEeeccCCceEEeecccccccCCccce
Confidence 8999999999999987655443 122346788889988887 888889999999999999985 22223333
Q ss_pred EeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCC-CCeEEE-EEcCCCCEEEE-E
Q 010871 407 FRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHR-FPVVAV-AWNHGENLLAS-S 483 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~-~~V~~l-~~sp~~~~l~s-~ 483 (498)
+........+...+.+.|.| +..+|++|-.-..|-|||-..++ .+..+.... ..|.++ .|||-+..+++ +
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P-----~~~li~vg~~~r~IDv~~~~~~q--~v~el~~P~~~tI~~vn~~HP~~~~~~aG~ 483 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDP-----DYNLIVVGRYPRPIDVFDGNGGQ--MVCELHDPESSTIPSVNEFHPMRDTLAAGG 483 (498)
T ss_pred eeccCcccccccchhheeCC-----CccEEEEeccCcceeEEcCCCCE--EeeeccCccccccccceeecccccceeccC
Confidence 44444455667778888988 99999999999999999988743 455554433 256555 89998884544 5
Q ss_pred eCCCeEEEeecCCC
Q 010871 484 DLYGIVIVWKRAKT 497 (498)
Q Consensus 484 ~~Dg~i~iW~~~~~ 497 (498)
+..|.|+||.-+++
T Consensus 484 ~s~Gki~vft~k~~ 497 (498)
T KOG4328|consen 484 NSSGKIYVFTNKKS 497 (498)
T ss_pred CccceEEEEecCCC
Confidence 56799999986654
No 99
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.1e-25 Score=201.90 Aligned_cols=261 Identities=17% Similarity=0.254 Sum_probs=205.3
Q ss_pred ecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc---------eeEEeecCCCCeEEEEEccCC-CEEEEEeCCC
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK---------VIKLLNGHSKDVTDFDFSSNN-QYIASSSMDK 253 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~---------~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg 253 (498)
--|.+.|+.+++-|.+..++|+++..+.|.|||...... +-..+.+|...=++|+|++.. -.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 458999999999999999999999999999999875321 223788999988999999854 4899999999
Q ss_pred cEEEEECCCCc-------EEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC--CcEEEEe-ecCCCeEEEEE
Q 010871 254 TVRVWELTKGD-------CIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFST--GRIIKKL-VVDSEVTSMDH 322 (498)
Q Consensus 254 ~v~iwd~~~~~-------~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~-~~~~~i~~l~~ 322 (498)
+|++||+.... ....+.+|. .|..++|++....++++++.|+.+.|||+++ .+..... .|...|.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999998543 234566775 5669999999999999999999999999995 3333333 58899999999
Q ss_pred cCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccc
Q 010871 323 DHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEI 401 (498)
Q Consensus 323 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~ 401 (498)
+|-+. .||+|+.|++|.+||++.... ....+.+|...|..+.|++ .....|++++.|+.+.+||+..-.
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~------~lh~~e~H~dev~~V~WSP----h~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNK------PLHTFEGHEDEVFQVEWSP----HNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhccc------CceeccCCCcceEEEEeCC----CCCceeEecccCCcEEEEeccccc
Confidence 99654 788999999999999987654 2334589999999999983 345688889999999999986211
Q ss_pred cceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCC-EE
Q 010871 402 QGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGEN-LL 480 (498)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l 480 (498)
. ..-. . |...+..+++..-.||...|..+.|+|... .|
T Consensus 351 ~-------------------------------eq~~---e-------da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I 389 (422)
T KOG0264|consen 351 E-------------------------------EQSP---E-------DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTI 389 (422)
T ss_pred c-------------------------------ccCh---h-------hhccCCcceeEEecCcccccccccCCCCCCeEE
Confidence 0 0000 0 011222345677789999999999999876 56
Q ss_pred EEEeCCCeEEEeecC
Q 010871 481 ASSDLYGIVIVWKRA 495 (498)
Q Consensus 481 ~s~~~Dg~i~iW~~~ 495 (498)
+|.+.|+.+.||+..
T Consensus 390 ~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 390 ASVAEDNILQIWQMA 404 (422)
T ss_pred EEecCCceEEEeecc
Confidence 788999999999976
No 100
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=6.6e-26 Score=189.57 Aligned_cols=201 Identities=18% Similarity=0.302 Sum_probs=181.5
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD 264 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 264 (498)
.|+.-|.+++|+. +..+|++|+.+..++|||++.+..+...+.+|.+.|..+.|....+.|++++.|++||+||..++.
T Consensus 98 ~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt 176 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT 176 (334)
T ss_pred hhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc
Confidence 4677899999998 899999999999999999998778888999999999999999988999999999999999999999
Q ss_pred EEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEcc
Q 010871 265 CIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISME 344 (498)
Q Consensus 265 ~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~ 344 (498)
.++++.....+.++..++++ .+|.++ ..+.|.+||..+...++.+..+..|.+..++|+...+++|++|..++.||..
T Consensus 177 ~v~sL~~~s~VtSlEvs~dG-~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 177 EVQSLEFNSPVTSLEVSQDG-RILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred EEEEEecCCCCcceeeccCC-CEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEecc
Confidence 99999999999999999955 555544 7789999999999999999999999999999999999999999999999987
Q ss_pred CCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 345 SHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
+....... ..+|.++|.|+.|+ |+|...++|+.||+|++|.+..
T Consensus 255 TgeEi~~~------nkgh~gpVhcVrFS-----PdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 255 TGEEIGSY------NKGHFGPVHCVRFS-----PDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CCceeeec------ccCCCCceEEEEEC-----CCCceeeccCCCceEEEEEecC
Confidence 65433221 27899999999998 9999999999999999998764
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.3e-26 Score=213.78 Aligned_cols=286 Identities=19% Similarity=0.316 Sum_probs=220.4
Q ss_pred cccccEE---EEEEecCCCCEEEEEeCCCcEEEEEcCCCCc-----eeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 010871 185 QCKAAVT---ILKFGHMSSDLLAYGASDGTLTVCTVSDPPK-----VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVR 256 (498)
Q Consensus 185 ~h~~~V~---~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~ 256 (498)
.|...|. .+..+...+++|.|||.||.|++|+...... ....++.|.+.|..+....+++.|+|+|.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 4555666 6667776888999999999999999875322 3667889999999999999999999999999999
Q ss_pred EEECCCC--cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC--cEEEEe----------ecCCCeEEEE
Q 010871 257 VWELTKG--DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTG--RIIKKL----------VVDSEVTSMD 321 (498)
Q Consensus 257 iwd~~~~--~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~----------~~~~~i~~l~ 321 (498)
+|+...+ -|+.++..|. -|.|+++...+..++++|+-|+.|.+||+.++ +.+..+ ++...|.+++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9999877 6778888885 67799985557789999999999999999987 333332 2456899999
Q ss_pred EcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccc
Q 010871 322 HDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEI 401 (498)
Q Consensus 322 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~ 401 (498)
.++.|..|+.|+..+.|++||.++...... +.+|...|..+... .+|..+++++.||+|++||+....
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimk-------LrGHTdNVr~ll~~-----dDGt~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMK-------LRGHTDNVRVLLVN-----DDGTRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceee-------eeccccceEEEEEc-----CCCCeEeecCCCceEEeeeccccc
Confidence 999999999999999999999876543322 36899999988877 999999999999999999997431
Q ss_pred cceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEE
Q 010871 402 QGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLA 481 (498)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~ 481 (498)
. ... ...+...+..+ ..+++-.++++|+.||.|+.=|+.+.. .+. .+.....+|..+..+...+-+-
T Consensus 247 C---l~T-~~vH~e~VWaL-------~~~~sf~~vYsG~rd~~i~~Tdl~n~~-~~t-lick~daPv~~l~~~~~~~~~W 313 (735)
T KOG0308|consen 247 C---LAT-YIVHKEGVWAL-------QSSPSFTHVYSGGRDGNIYRTDLRNPA-KST-LICKEDAPVLKLHLHEHDNSVW 313 (735)
T ss_pred e---eee-EEeccCceEEE-------eeCCCcceEEecCCCCcEEecccCCch-hhe-EeecCCCchhhhhhccccCCce
Confidence 1 111 11122223333 222477899999999999999999852 122 2223455777777775445556
Q ss_pred EEeCCCeEEEeecC
Q 010871 482 SSDLYGIVIVWKRA 495 (498)
Q Consensus 482 s~~~Dg~i~iW~~~ 495 (498)
++..|+.|+-|..+
T Consensus 314 vtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 314 VTTTDSSIKRWKLE 327 (735)
T ss_pred eeeccccceecCCc
Confidence 77788999999765
No 102
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.4e-25 Score=185.73 Aligned_cols=259 Identities=20% Similarity=0.248 Sum_probs=197.9
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC--ceeEEeecCCCCeEEEEEcc--CCCEEEEEeCCCc
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP--KVIKLLNGHSKDVTDFDFSS--NNQYIASSSMDKT 254 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~--~~~~l~s~s~dg~ 254 (498)
++.+-.+|++.|..+...- .|++|||++.|++|+|+.+...+ .++..|.||.++|..++|.. -|.+|++++.||.
T Consensus 3 ~q~idt~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 3 MQTIDTQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred ceehhhhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 3456678999999988887 89999999999999999998755 57888999999999999976 7899999999999
Q ss_pred EEEEECCCCcEE--EEEecC-CCeEEEEEEcCC-CcEEEEEeCCCcEEEEEcCCC-c-EEEEe--ecCCCeEEEEEcCC-
Q 010871 255 VRVWELTKGDCI--RVIYGV-SSQLCIRFHPVN-NNFLSVGNANKEITVFNFSTG-R-IIKKL--VVDSEVTSMDHDHT- 325 (498)
Q Consensus 255 v~iwd~~~~~~~--~~~~~~-~~v~~i~~~~~~-~~~l~~g~~dg~i~iwd~~~~-~-~~~~~--~~~~~i~~l~~~~~- 325 (498)
|.||.-+.|+-. .....| ..+.+++|.|.+ +-+|++++.||.|.|.+.+.. . ....+ .|.-.|++++|.|.
T Consensus 82 VIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred EEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcC
Confidence 999998888432 233344 578899999965 356888999999999998764 1 22222 48889999999986
Q ss_pred --C-----------CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcE
Q 010871 326 --G-----------QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNL 392 (498)
Q Consensus 326 --~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i 392 (498)
| +.|++|+.|..|++|+.+...-.... .+.+|.+-|..++|.+.. .-...+|+++++||++
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~-----~l~~H~dwVRDVAwaP~~-gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER-----TLEGHKDWVRDVAWAPSV-GLPKSTIASCSQDGTV 235 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhh-----hhhhcchhhhhhhhcccc-CCCceeeEEecCCCcE
Confidence 4 56999999999999998765322221 258899999999987321 1123579999999999
Q ss_pred EEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 393 SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 393 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
.||..+.. .+.........+... ..+.+|+. .|++|+.++.|+.|.+|--..
T Consensus 236 iIwt~~~e-~e~wk~tll~~f~~~--~w~vSWS~-----sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 236 IIWTKDEE-YEPWKKTLLEEFPDV--VWRVSWSL-----SGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEEecCc-cCcccccccccCCcc--eEEEEEec-----cccEEEEecCCcEEEEEEeCC
Confidence 99988732 222222222223333 33447776 899999999999999997653
No 103
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=8.5e-25 Score=207.52 Aligned_cols=306 Identities=18% Similarity=0.262 Sum_probs=211.9
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEe--CCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC--CCc
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGA--SDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM--DKT 254 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~--~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~--dg~ 254 (498)
.++++.-|..+++|++|++ +|+++|+|- ....++||++.. ...+..|..|.-.|+|++|+|.++|+++.+. |-.
T Consensus 70 Q~hlvnssRk~~t~vAfS~-~GryvatGEcG~~pa~kVw~la~-h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMI 147 (1080)
T KOG1408|consen 70 QSHLVNSSRKPLTCVAFSQ-NGRYVATGECGRTPASKVWSLAF-HGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMI 147 (1080)
T ss_pred hhheecccCcceeEEEEcC-CCcEEEecccCCCccceeeeecc-ccchhhhhhccccceeeeecCCCcEEEeeccccceE
Confidence 3456677888999999999 999999985 677899999998 6688899999999999999999999987654 334
Q ss_pred EEEEECCC----------------------------------------CcEEE---------------------------
Q 010871 255 VRVWELTK----------------------------------------GDCIR--------------------------- 267 (498)
Q Consensus 255 v~iwd~~~----------------------------------------~~~~~--------------------------- 267 (498)
|.+||.+. ++...
T Consensus 148 Vnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~ 227 (1080)
T KOG1408|consen 148 VNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGV 227 (1080)
T ss_pred EEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcC
Confidence 55565432 11000
Q ss_pred ------EE----ecC------------------CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee--c----
Q 010871 268 ------VI----YGV------------------SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV--V---- 313 (498)
Q Consensus 268 ------~~----~~~------------------~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~---- 313 (498)
++ .+| ....|++. +..++++|+.+|.|++|+..+-..+.++. |
T Consensus 228 gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV---s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~ 304 (1080)
T KOG1408|consen 228 GICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV---SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGS 304 (1080)
T ss_pred cccccceEEEecccceeeechhhhhhhhhhhhccccceeee---ecceEEEeeccceeeecCcchhhhcccccccccccc
Confidence 00 000 01123333 34789999999999999987655444432 0
Q ss_pred ----------------C---CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEe
Q 010871 314 ----------------D---SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSF 374 (498)
Q Consensus 314 ----------------~---~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 374 (498)
+ -...++.|++....|.+...|..+++||++.....-. .....-|...|+.+...+.
T Consensus 305 d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk----~~s~lyHS~ciW~Ve~~p~ 380 (1080)
T KOG1408|consen 305 DTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK----CSSMLYHSACIWDVENLPC 380 (1080)
T ss_pred chhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccc----eeeeeeccceeeeeccccc
Confidence 0 0134677899999999999999999999986442211 1112445666666654431
Q ss_pred -------eEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeec----------------c----------CCceeeeE
Q 010871 375 -------SLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLK----------------L----------APRVHSIR 421 (498)
Q Consensus 375 -------~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~----------------~----------~~~~~~~~ 421 (498)
+..|.+ .|+|++.|++|++|++.....+....+.... + ......-+
T Consensus 381 nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r 459 (1080)
T KOG1408|consen 381 NVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSR 459 (1080)
T ss_pred cccCcccccCCcc-ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcc
Confidence 111333 4899999999999999863322221110000 0 00001112
Q ss_pred EEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcC---CCCEEEEEeCCCeEEEeecCC
Q 010871 422 ASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH---GENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 422 ~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp---~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
..|..++++|+|++||+|..-|+++||++.+ ......+.+|...|.|+.|+. ..++||+++.|..|+|+|+..
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQE--LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehh--hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 3455677778999999999999999999998 456778899999999999983 346899999999999999864
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.1e-24 Score=185.48 Aligned_cols=242 Identities=14% Similarity=0.222 Sum_probs=182.8
Q ss_pred cCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCC-CcEEEE--EecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC
Q 010871 229 GHSKDVTDFDFSS-NNQYIASSSMDKTVRVWELTK-GDCIRV--IYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST 304 (498)
Q Consensus 229 ~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~-~~~~~~--~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 304 (498)
.-.+.|.+|+|+| ...+|+++|.||+||+|+++. |..+-+ ....+++.+++|+.++ ..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccC
Confidence 4568899999999 445666999999999999986 333322 2344689999999865 8889999999999999999
Q ss_pred CcEEEEeecCCCeEEEEEcCCCC--EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcE
Q 010871 305 GRIIKKLVVDSEVTSMDHDHTGQ--LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPV 382 (498)
Q Consensus 305 ~~~~~~~~~~~~i~~l~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~ 382 (498)
++....-.|..+|.++.|-+... .|++|+.|.+|++||.+.........++ ..+.++. -...+
T Consensus 104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--------eRvYa~D-------v~~pm 168 (347)
T KOG0647|consen 104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--------ERVYAAD-------VLYPM 168 (347)
T ss_pred CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--------ceeeehh-------ccCce
Confidence 98887778999999999987765 8999999999999999865544333222 2244433 33678
Q ss_pred EEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec
Q 010871 383 LLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ 462 (498)
Q Consensus 383 l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~ 462 (498)
++++..+..|.+|+++.+...+....... .-...++ ++..+....+.|+-+|.+.|..+..+....-..++
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~~~SpL--k~Q~R~v-------a~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKRIESPL--KWQTRCV-------ACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhhhcCcc--cceeeEE-------EEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence 89999999999999986544333222221 1122222 22247777799999999999999886434456677
Q ss_pred CCCC---------CeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 463 GHRF---------PVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 463 ~h~~---------~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.|.. .|++|+|+|....|+|+|.||++.+||-+
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 7763 47889999999999999999999999854
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.5e-24 Score=215.99 Aligned_cols=257 Identities=20% Similarity=0.325 Sum_probs=199.3
Q ss_pred cceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCC------C-----------CceeEEeecCCCCeEEEEEc
Q 010871 178 GMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD------P-----------PKVIKLLNGHSKDVTDFDFS 240 (498)
Q Consensus 178 ~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~------~-----------~~~~~~~~~h~~~V~~l~~s 240 (498)
.+.+....|.+.|+|+.|+| +|.+||+|+.|+.|.||.... . -+.+..+.+|...|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 35567788999999999999 999999999999999999872 1 13677889999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-------
Q 010871 241 SNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV------- 312 (498)
Q Consensus 241 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------- 312 (498)
|++.+|++++.|++|.|||..+.+.+..+.+|. .|..+.|.|- ++++++-+.|++|+||++.+....+.+.
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 999999999999999999999999999999985 6779999995 5899999999999999987766666663
Q ss_pred cCCCeEEEEEcCCCCEEEEEcC----CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCc-------
Q 010871 313 VDSEVTSMDHDHTGQLLFCGDA----QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGP------- 381 (498)
Q Consensus 313 ~~~~i~~l~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~------- 381 (498)
....+..+.|+|||.+|++... ...+.|.+-..-+. ...+.+|..++.++.|.+--+.....
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~-------~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV-------DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee-------eeeeecCCCceEEEEeChHHhccccccCCccCC
Confidence 2345788999999999998743 22455554332221 12247899999999997532222222
Q ss_pred -----EEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCC
Q 010871 382 -----VLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 382 -----~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
.+++|+.|++|.||....... .+....-+.. ..+..+|+| ||..|+++|.||+|.++.+...
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RP---l~vi~~lf~~--SI~DmsWsp-----dG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRP---LFVIHNLFNK--SIVDMSWSP-----DGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCc---hhhhhhhhcC--ceeeeeEcC-----CCCeEEEEecCCeEEEEEcchH
Confidence 688999999999999853321 1111111122 233447776 9999999999999999998753
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3.6e-24 Score=192.46 Aligned_cols=247 Identities=17% Similarity=0.235 Sum_probs=197.2
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
..+|.||...|+.+.|+| +...+++++.|..|+||.... .........|..+|+.+..+|.|.||++++.||+....|
T Consensus 254 l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~-~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd 331 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPL-SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD 331 (506)
T ss_pred hhhccCcceEEEEEEecc-chhheeecCCcceEEeecccc-ccCccccccccccceeeeeccCCcEEEEecCCceEEEEE
Confidence 347899999999999999 899999999999999999987 556677788999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCC---CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCC
Q 010871 260 LTKGDCIRVIYGVS---SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQ 335 (498)
Q Consensus 260 ~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d 335 (498)
++++.++....... .+.+.+|+|+ +.++.+|..||.|+|||+..+..+..| .|.++|..++|+.+|-+|++++.|
T Consensus 332 ~~~g~~lt~vs~~~s~v~~ts~~fHpD-gLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 332 ISSGSQLTVVSDETSDVEYTSAAFHPD-GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD 410 (506)
T ss_pred ccCCcEEEEEeeccccceeEEeeEcCC-ceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC
Confidence 99999888877643 4679999995 589999999999999999999988888 599999999999999999999999
Q ss_pred CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCC
Q 010871 336 GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAP 415 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 415 (498)
+.|++||++......... ......+.++.|. +.|.+|+.++.|=+|++++-.+. .+.+......
T Consensus 411 ~~V~lwDLRKl~n~kt~~------l~~~~~v~s~~fD-----~SGt~L~~~g~~l~Vy~~~k~~k-----~W~~~~~~~~ 474 (506)
T KOG0289|consen 411 GSVKLWDLRKLKNFKTIQ------LDEKKEVNSLSFD-----QSGTYLGIAGSDLQVYICKKKTK-----SWTEIKELAD 474 (506)
T ss_pred CeEEEEEehhhcccceee------ccccccceeEEEc-----CCCCeEEeecceeEEEEEecccc-----cceeeehhhh
Confidence 999999998654222111 1222357777666 89999999988766666653321 2222222222
Q ss_pred ce-eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEEC
Q 010871 416 RV-HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDL 450 (498)
Q Consensus 416 ~~-~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~ 450 (498)
+. ..-.+.|. ...+++++++.|..++++.+
T Consensus 475 ~sg~st~v~Fg-----~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 475 HSGLSTGVRFG-----EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccccceeeec-----ccceEEeeccchhheEEeec
Confidence 21 11122343 37889999999999888764
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.6e-23 Score=169.17 Aligned_cols=249 Identities=17% Similarity=0.281 Sum_probs=196.0
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC----ceeEEeecCCCCeEEEEEccC----CCEEEEEeC-C
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP----KVIKLLNGHSKDVTDFDFSSN----NQYIASSSM-D 252 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~s~~----~~~l~s~s~-d 252 (498)
+-+.|++.|+|.+|+| .|.+||+|+.|.+|++.-.+... .....|.-|.+.|..++|..+ +..|++++. |
T Consensus 84 r~khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred eccccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 4577899999999999 99999999999999998766421 123456779999999999653 457777654 6
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee--------cCCCeEEEEEcC
Q 010871 253 KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV--------VDSEVTSMDHDH 324 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------~~~~i~~l~~~~ 324 (498)
..|.+-|..+|+.++.+.+|..-+-..++- ++-++++|+.|.+|++||++-..++..+. ..+.|.++++.|
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP 241 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC
Confidence 677788888999999999997544333333 56899999999999999999999998884 236799999999
Q ss_pred CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccce
Q 010871 325 TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGY 404 (498)
Q Consensus 325 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~ 404 (498)
.|++|++|..|....+||++...... .+..|...|.++.|+ |...++++++.|..|++-|+.......
T Consensus 242 sgrll~sg~~dssc~lydirg~r~iq-------~f~phsadir~vrfs-----p~a~yllt~syd~~ikltdlqgdla~e 309 (350)
T KOG0641|consen 242 SGRLLASGHADSSCMLYDIRGGRMIQ-------RFHPHSADIRCVRFS-----PGAHYLLTCSYDMKIKLTDLQGDLAHE 309 (350)
T ss_pred CcceeeeccCCCceEEEEeeCCceee-------eeCCCccceeEEEeC-----CCceEEEEecccceEEEeecccchhhc
Confidence 99999999999999999998654322 236788889999887 999999999999999999998654433
Q ss_pred eeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 405 LTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
+....... ..-..+.+.|.| ..--+++.+.|.++.+|-+.
T Consensus 310 l~~~vv~e--hkdk~i~~rwh~-----~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 310 LPIMVVAE--HKDKAIQCRWHP-----QDFSFISSSADKTATLWALN 349 (350)
T ss_pred CceEEEEe--ccCceEEEEecC-----ccceeeeccCcceEEEeccC
Confidence 33333222 333456668887 66678889999999999764
No 108
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=9.9e-24 Score=178.34 Aligned_cols=241 Identities=16% Similarity=0.290 Sum_probs=193.9
Q ss_pred EeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC
Q 010871 226 LLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFST 304 (498)
Q Consensus 226 ~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 304 (498)
.++||..+++.+.|+.+|.+|++|+.|.+..+|-..+|+.+.++.+|. .|.|+...- ....+++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 478999999999999999999999999999999999999999999996 667777766 558999999999999999999
Q ss_pred CcEEEEeecCCCeEEEEEcCCCCEEEEEcC-----CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCC
Q 010871 305 GRIIKKLVVDSEVTSMDHDHTGQLLFCGDA-----QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG 379 (498)
Q Consensus 305 ~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~ 379 (498)
|+++..+.....|..+.|+++|++++.... .+.|.++|++..........+......+.+.++.+-|. |-
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg-----~l 158 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG-----PL 158 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec-----cc
Confidence 999999999999999999999998877644 56799999986553333222222334555777777776 89
Q ss_pred CcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCcccee
Q 010871 380 GPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVN 459 (498)
Q Consensus 380 ~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~ 459 (498)
+.+|++|..||.|.+||++++.+ .......+...+. .+.+++|..++++|+.|.+-++||+.+ ..++.
T Consensus 159 ~~~ii~Ghe~G~is~~da~~g~~---~v~s~~~h~~~In-------d~q~s~d~T~FiT~s~Dttakl~D~~t--l~v~K 226 (327)
T KOG0643|consen 159 GETIIAGHEDGSISIYDARTGKE---LVDSDEEHSSKIN-------DLQFSRDRTYFITGSKDTTAKLVDVRT--LEVLK 226 (327)
T ss_pred CCEEEEecCCCcEEEEEcccCce---eeechhhhccccc-------cccccCCcceEEecccCccceeeeccc--eeeEE
Confidence 99999999999999999986532 2222222333333 333345999999999999999999998 66677
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeC
Q 010871 460 KLQGHRFPVVAVAWNHGENLLASSDL 485 (498)
Q Consensus 460 ~~~~h~~~V~~l~~sp~~~~l~s~~~ 485 (498)
++.. ..+|++.+++|....++.|+.
T Consensus 227 ty~t-e~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 227 TYTT-ERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred Eeee-cccccceecccccceEEecCC
Confidence 7764 679999999998777776653
No 109
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.4e-24 Score=195.08 Aligned_cols=240 Identities=18% Similarity=0.305 Sum_probs=189.2
Q ss_pred ecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG 263 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 263 (498)
.+|...|.+++.|+ ++++||+|+.|..|.||+..+ .+.++.+.+|.+.|.+++|-.....|++++.|++|++|+++..
T Consensus 199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL 276 (479)
T ss_pred ccccceeEEEEEcC-CCcEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence 48999999999999 999999999999999999999 8889999999999999999988889999999999999999999
Q ss_pred cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEE
Q 010871 264 DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSIS 342 (498)
Q Consensus 264 ~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d 342 (498)
..+.++.+|. .|..+.... -...+.+|+.|+++++|++.....+....+...+.|++|-.+ ..|++|+.+|.|.+|+
T Consensus 277 s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWS 354 (479)
T ss_pred HHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEee
Confidence 9899998885 566777766 457888888999999999966666655578889999999754 6899999999999999
Q ss_pred ccCCcccccccccccccCC-----CccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCce
Q 010871 343 MESHSGALSRSHRHRTTGK-----RKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRV 417 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 417 (498)
+-...........+..... +...|+++... +..+++++|+.+|.|++|-+..+.. .+.+.....+.+-+
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i-----~~sdL~asGS~~G~vrLW~i~~g~r-~i~~l~~ls~~GfV 428 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVI-----PGSDLLASGSWSGCVRLWKIEDGLR-AINLLYSLSLVGFV 428 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEec-----ccCceEEecCCCCceEEEEecCCcc-ccceeeecccccEE
Confidence 8776655544333322222 11245555444 9999999999999999999986633 22333333344444
Q ss_pred eeeEEEEeeeeeccCCCEEEEEe
Q 010871 418 HSIRASFCPLLSLEKGEYIVAGS 440 (498)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~gs 440 (498)
+.+ +|+ .+|+.|++|.
T Consensus 429 Nsl--~f~-----~sgk~ivagi 444 (479)
T KOG0299|consen 429 NSL--AFS-----NSGKRIVAGI 444 (479)
T ss_pred EEE--EEc-----cCCCEEEEec
Confidence 444 344 4898776663
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.2e-24 Score=192.85 Aligned_cols=273 Identities=18% Similarity=0.273 Sum_probs=200.7
Q ss_pred EEeCC-CcEEEEEcCCCCceeEEeecC-CCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCcEEE-EEecCCCeEEEEE
Q 010871 205 YGASD-GTLTVCTVSDPPKVIKLLNGH-SKDVTDFDFSSNNQYIASSSM-DKTVRVWELTKGDCIR-VIYGVSSQLCIRF 280 (498)
Q Consensus 205 sg~~d-g~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~~-~~~~~~~v~~i~~ 280 (498)
+++.| ..+.+||+.+ +....++++. ...-.++..- .+.+++++.. ...|.+|.+....... .+...+.+.+++-
T Consensus 12 ssS~d~~~~~~~dl~T-Gt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s 89 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRT-GTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALAS 89 (476)
T ss_pred ccCCCCcceeEEecCC-CceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeec
Confidence 33444 4599999999 6666666654 2222222221 2356666644 4578999988665444 4455677889999
Q ss_pred EcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccc--cccccc
Q 010871 281 HPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALS--RSHRHR 357 (498)
Q Consensus 281 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~ 357 (498)
+| .+.+|+.|+..|.|++|.+.+|..+..+ .|-..|+|+.|+.||.+|++|+.||.|.+|++...-.... ...+..
T Consensus 90 ~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 90 SN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred CC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 88 5578888889999999999999998888 6889999999999999999999999999998753211111 223334
Q ss_pred ccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEE
Q 010871 358 TTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIV 437 (498)
Q Consensus 358 ~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 437 (498)
.+..|.-+|+.+.+.. .+...+|+|+|.|.++++||+..+ .+.....++..+.++ ... |-+..++
T Consensus 169 ~f~~HtlsITDl~ig~---Gg~~~rl~TaS~D~t~k~wdlS~g-----~LLlti~fp~si~av--~lD-----pae~~~y 233 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGS---GGTNARLYTASEDRTIKLWDLSLG-----VLLLTITFPSSIKAV--ALD-----PAERVVY 233 (476)
T ss_pred eeccCcceeEEEEecC---CCccceEEEecCCceEEEEEeccc-----eeeEEEecCCcceeE--EEc-----ccccEEE
Confidence 5688999999988751 123568999999999999999865 222222233333322 333 4889999
Q ss_pred EEeCCCcEEEEECCCCC--------------ccceeeecCCCC--CeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 438 AGSEDSNVYFYDLAKPK--------------HSCVNKLQGHRF--PVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 438 ~gs~dg~I~iwd~~~~~--------------~~~~~~~~~h~~--~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+|+.+|.|.+.++.... ...+..+.||.+ .|+|++.+-||.+|++|+.||.|+|||+.
T Consensus 234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 99999999998876432 233556778988 99999999999999999999999999975
No 111
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.5e-23 Score=180.93 Aligned_cols=241 Identities=15% Similarity=0.170 Sum_probs=189.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEE
Q 010871 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIK 309 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 309 (498)
....|..|.|+|.+..|+.+++||++++||+........+....++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC--CceEEEeccCceEEEEEecCCccee
Confidence 46789999999999999999999999999999988888888889999999987 4689999999999999999999888
Q ss_pred EeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC
Q 010871 310 KLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD 389 (498)
Q Consensus 310 ~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d 389 (498)
...|...|.|+.+.+....+++|+.|+.|++||.+....... ......|.++. -.++.|++|+.|
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~--------~d~~kkVy~~~-------v~g~~LvVg~~~ 154 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT--------FDQGKKVYCMD-------VSGNRLVVGTSD 154 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc--------cccCceEEEEe-------ccCCEEEEeecC
Confidence 888999999999999889999999999999999985322221 12223566666 459999999999
Q ss_pred CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC--ccceeeecCCC--
Q 010871 390 GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK--HSCVNKLQGHR-- 465 (498)
Q Consensus 390 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~--~~~~~~~~~h~-- 465 (498)
..+.+||++......... ...+.....+++..|++.-+++++-||.|.+=.++... ......|+.|.
T Consensus 155 r~v~iyDLRn~~~~~q~r---------eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~ 225 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRR---------ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS 225 (323)
T ss_pred ceEEEEEcccccchhhhc---------cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc
Confidence 999999998653322111 11111122223333478889999999998876655431 12344566664
Q ss_pred -------CCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 466 -------FPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 466 -------~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
-+|++|+|+|-...|||||.||.|.+||+..
T Consensus 226 ~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 226 EKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred cCCceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence 3699999999999999999999999999864
No 112
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=1.2e-23 Score=182.92 Aligned_cols=310 Identities=16% Similarity=0.252 Sum_probs=231.8
Q ss_pred CCcceeecceeeeecccccEEEEEEecC----CCCEEEEEeCCCcEEEEEcCCCC--ceeEEee--cCCCCeEEEEEccC
Q 010871 171 EPAYSFVGMHCIFDQCKAAVTILKFGHM----SSDLLAYGASDGTLTVCTVSDPP--KVIKLLN--GHSKDVTDFDFSSN 242 (498)
Q Consensus 171 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~----~~~~lasg~~dg~i~iwd~~~~~--~~~~~~~--~h~~~V~~l~~s~~ 242 (498)
.+.|++. ..+...|+.+|..++|++. ..+.+|+.|. ..+.+|.....+ ..++... .|......++|+-+
T Consensus 24 k~~yk~t--~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 24 KRSYKYT--NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYD 100 (385)
T ss_pred ccceEee--eehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEec
Confidence 4456654 3466889999999999852 3356777765 458899887644 3333332 37788889999764
Q ss_pred ----CCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee----c
Q 010871 243 ----NQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV----V 313 (498)
Q Consensus 243 ----~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----~ 313 (498)
+.+||.|+.-|.|+|.|+.++++...+.+|+ .+..+.++|...+++++++.|..|++|++++..++..++ |
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH 180 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH 180 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccc
Confidence 3489999999999999999999999999986 788999999999999999999999999999999999984 8
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccc--cc-------------------ccccccccCCCccceeeEEEe
Q 010871 314 DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGA--LS-------------------RSHRHRTTGKRKCPVTTVQYR 372 (498)
Q Consensus 314 ~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~-------------------~~~~~~~~~~~~~~i~~~~~~ 372 (498)
...|.++.|+.+|.+|++++.|..|++|++....-. +. ..........|...|.|+.|-
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 899999999999999999999999999999732110 00 000111235577777888775
Q ss_pred EeeEcCCCcEEEEEEcCCcEEEEEccc-ccc--------ceeeEeEeec-cCCceeeeEEEEeeeeeccCCCEEEEEeCC
Q 010871 373 SFSLLAGGPVLLTCTQDGNLSFFSVAL-EIQ--------GYLTFRCSLK-LAPRVHSIRASFCPLLSLEKGEYIVAGSED 442 (498)
Q Consensus 373 ~~~~s~~~~~l~t~s~dg~i~iwd~~~-~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d 442 (498)
|+++++-+-++.|..|.... ... .......... ....+..+..+|.+ -++.||.|...
T Consensus 261 -------gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-----~~~~la~gnq~ 328 (385)
T KOG1034|consen 261 -------GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-----WQKMLALGNQS 328 (385)
T ss_pred -------hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-----HHHHHhhccCC
Confidence 78999999999999998721 110 0011111111 12234455556665 78999999999
Q ss_pred CcEEEEECCCCCccceeeecCC--CCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 443 SNVYFYDLAKPKHSCVNKLQGH--RFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 443 g~I~iwd~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
|.|++||++..+.....++..+ ...|...+|+.|+.+|+....|++|.-||.-
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999998654222333222 3569999999999999999999999999864
No 113
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=4.8e-25 Score=191.01 Aligned_cols=275 Identities=20% Similarity=0.253 Sum_probs=208.3
Q ss_pred ceeeeeecCCCCCCCccCCCCCcceee--cceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee
Q 010871 151 HRTSFSSTASDSDQPRRQGPEPAYSFV--GMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN 228 (498)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~ 228 (498)
....++.+.++-+..|.+..+...+-. ..+..|.-|..+|.|+.||. +...||+|+.||.|+||.+.+ +.+++.|.
T Consensus 225 gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~t-G~ClRrFd 302 (508)
T KOG0275|consen 225 GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIET-GQCLRRFD 302 (508)
T ss_pred CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEec-chHHHHhh
Confidence 334444455666666666555433321 23446777899999999999 899999999999999999999 78888876
Q ss_pred -cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC-eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc
Q 010871 229 -GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSS-QLCIRFHPVNNNFLSVGNANKEITVFNFSTGR 306 (498)
Q Consensus 229 -~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 306 (498)
.|+..|+|+.|+.|+..+++++.|.++++.-+.+|++++.+.+|+. +....|.+ +++.+++++.||+|++|+..+.+
T Consensus 303 rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~Ktte 381 (508)
T KOG0275|consen 303 RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTE 381 (508)
T ss_pred hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchh
Confidence 8999999999999999999999999999999999999999999974 56778887 55889999999999999999999
Q ss_pred EEEEee---cCCCeEEEEEcCCC-CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcE
Q 010871 307 IIKKLV---VDSEVTSMDHDHTG-QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPV 382 (498)
Q Consensus 307 ~~~~~~---~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~ 382 (498)
++.++. ...+|.++-..|.+ ..++++...++|++.++... ..+..... ....+ .|....++|.|.+
T Consensus 382 C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ---vVrsfsSG--kREgG-----dFi~~~lSpkGew 451 (508)
T KOG0275|consen 382 CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ---VVRSFSSG--KREGG-----DFINAILSPKGEW 451 (508)
T ss_pred hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce---EEeeeccC--CccCC-----ceEEEEecCCCcE
Confidence 999885 45678888888765 47888999999999887532 22222110 11112 2333445599999
Q ss_pred EEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEE
Q 010871 383 LLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYD 449 (498)
Q Consensus 383 l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd 449 (498)
+++.+.|+.++.|.+.++........ +. -..+...-+| ..+.||+-++||.+++|.
T Consensus 452 iYcigED~vlYCF~~~sG~LE~tl~V----hE--kdvIGl~HHP-----HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 452 IYCIGEDGVLYCFSVLSGKLERTLPV----HE--KDVIGLTHHP-----HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEccCcEEEEEEeecCceeeeeec----cc--ccccccccCc-----ccchhhhhcccchhhhcC
Confidence 99999999999999876533221111 11 1112223344 889999999999999994
No 114
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3e-23 Score=178.88 Aligned_cols=273 Identities=18% Similarity=0.236 Sum_probs=196.3
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC---ceeEEeecCCCCeEEEEEcc--CCCEEEEEeCCCcE
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP---KVIKLLNGHSKDVTDFDFSS--NNQYIASSSMDKTV 255 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~s~--~~~~l~s~s~dg~v 255 (498)
.+-.+|.+-|+|+.|.+ .|+.+|+|+.|++|+|||...+. .+....+.|.+.|..+.|.+ -|+.++++|.|+++
T Consensus 7 pi~s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred ccccCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 34578899999999999 99999999999999999975422 34556788999999999965 47999999999999
Q ss_pred EEEECCCC-------c--EEEEEe-cCCCeEEEEEEcCC-CcEEEEEeCCCcEEEEEcCCC------cEEEEee------
Q 010871 256 RVWELTKG-------D--CIRVIY-GVSSQLCIRFHPVN-NNFLSVGNANKEITVFNFSTG------RIIKKLV------ 312 (498)
Q Consensus 256 ~iwd~~~~-------~--~~~~~~-~~~~v~~i~~~~~~-~~~l~~g~~dg~i~iwd~~~~------~~~~~~~------ 312 (498)
.||.-... + ...++. ..+.+..+.|.|.. +-.+++++.||.|+||+.-.. .+...++
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 99985211 1 122333 33688999999964 356888999999999986543 2222332
Q ss_pred --cCCCeEEEEEcCC---CCEEEEEcCC-----CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcE
Q 010871 313 --VDSEVTSMDHDHT---GQLLFCGDAQ-----GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPV 382 (498)
Q Consensus 313 --~~~~i~~l~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~ 382 (498)
+.....|+.|++. ..+|++|+.+ +.++||............ ..+..|..+|+.+.|.+..- ..-..
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv---a~L~d~~dpI~di~wAPn~G-r~y~~ 241 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV---AELPDHTDPIRDISWAPNIG-RSYHL 241 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee---hhcCCCCCcceeeeeccccC-Cceee
Confidence 4567789999875 3578888766 478888776655444332 23468999999999974221 12357
Q ss_pred EEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec
Q 010871 383 LLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ 462 (498)
Q Consensus 383 l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~ 462 (498)
|++++.|| |+||.+...... . . ....+ +++. +.++. ...+..+.
T Consensus 242 lAvA~kDg-v~I~~v~~~~s~-------i-~------------------~ee~~-~~~~-----~~~l~---v~~vs~~~ 285 (361)
T KOG2445|consen 242 LAVATKDG-VRIFKVKVARSA-------I-E------------------EEEVL-APDL-----MTDLP---VEKVSELD 285 (361)
T ss_pred EEEeecCc-EEEEEEeeccch-------h-h------------------hhccc-CCCC-----ccccc---eEEeeecc
Confidence 89999999 999998631100 0 0 01111 1111 11122 33477788
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 463 GHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 463 ~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
+|.+.|..+.|+-.|..|++.|.||+||+|..
T Consensus 286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred CCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 99999999999999999999999999999974
No 115
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=2.1e-24 Score=185.98 Aligned_cols=252 Identities=19% Similarity=0.397 Sum_probs=190.9
Q ss_pred eEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC------------------cEEEEEecC-CCeEEEEEEcCC
Q 010871 224 IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG------------------DCIRVIYGV-SSQLCIRFHPVN 284 (498)
Q Consensus 224 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~------------------~~~~~~~~~-~~v~~i~~~~~~ 284 (498)
...+..|..++.+.+|++||.++++|+.|..|+|.|++.. -.++++..| ..|.++.|+| .
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence 4457789999999999999999999999999999998721 256777777 5788999999 5
Q ss_pred CcEEEEEeCCCcEEEEEcCCCcE---EEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCC
Q 010871 285 NNFLSVGNANKEITVFNFSTGRI---IKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGK 361 (498)
Q Consensus 285 ~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 361 (498)
..+|++|+.|++|++||+..... .+.++...+|.++.|+|.|.+|++|.....+++||+++.++-..... ...
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP----d~q 259 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP----DDQ 259 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc----ccc
Confidence 68999999999999999976543 33445678899999999999999999999999999987765544332 368
Q ss_pred CccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeC
Q 010871 362 RKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE 441 (498)
Q Consensus 362 ~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~ 441 (498)
|...|+++.++ +.+++.++++.||.|++||--.+ +|...+...-. ....+...+..+|+||++.+.
T Consensus 260 ht~ai~~V~Ys-----~t~~lYvTaSkDG~IklwDGVS~-------rCv~t~~~AH~--gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 260 HTGAITQVRYS-----STGSLYVTASKDGAIKLWDGVSN-------RCVRTIGNAHG--GSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred cccceeEEEec-----CCccEEEEeccCCcEEeeccccH-------HHHHHHHhhcC--CceeeeEEEccCCeEEeecCC
Confidence 89999999988 89999999999999999996432 22211111000 013334444469999999999
Q ss_pred CCcEEEEECCCCCccceeeecCC-----CCCeEEEEEcCCCCEEEEEeC-CCeEEEeecCC
Q 010871 442 DSNVYFYDLAKPKHSCVNKLQGH-----RFPVVAVAWNHGENLLASSDL-YGIVIVWKRAK 496 (498)
Q Consensus 442 dg~I~iwd~~~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~l~s~~~-Dg~i~iW~~~~ 496 (498)
|..+++|.+.++. ++..+.|- ..--+...|+....+++.-.. .+.+.-||-.+
T Consensus 326 DS~vkLWEi~t~R--~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt 384 (430)
T KOG0640|consen 326 DSTVKLWEISTGR--MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART 384 (430)
T ss_pred cceeeeeeecCCc--eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccc
Confidence 9999999999964 56666542 111234557777776665543 46677777554
No 116
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=5.7e-23 Score=188.06 Aligned_cols=295 Identities=16% Similarity=0.242 Sum_probs=223.7
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC---------------------------------------CceeE
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP---------------------------------------PKVIK 225 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~---------------------------------------~~~~~ 225 (498)
.|.+.|.+++.-. +|.+|- |+.|..|..||-.-. .....
T Consensus 285 aH~ggv~~L~~lr-~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 285 AHDGGVFSLCMLR-DGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred ecCCceEEEEEec-CccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence 8999999999987 766555 999999999994310 00122
Q ss_pred EeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC
Q 010871 226 LLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG 305 (498)
Q Consensus 226 ~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~ 305 (498)
...+|......++.+|+..++++++.|+.+++|+ ..+.+.+.....+..|+.|+|.+ .+++|...|...+.|.++.
T Consensus 363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccc
Confidence 3457888999999999999999999999999999 67788888888899999999965 8999999999999999997
Q ss_pred cEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEE
Q 010871 306 RIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT 385 (498)
Q Consensus 306 ~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t 385 (498)
..+.......+++++.|+|+|.+||+|+.|+.|++|.+........+.- .-+..+|+.+.|+ +|+++|.+
T Consensus 439 ~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-----k~~gs~ithLDwS-----~Ds~~~~~ 508 (626)
T KOG2106|consen 439 DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-----KCSGSPITHLDWS-----SDSQFLVS 508 (626)
T ss_pred eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-----eecCceeEEeeec-----CCCceEEe
Confidence 7777666789999999999999999999999999999876665554432 2223788888877 99999999
Q ss_pred EEcCCcEEEEEcccccccee-------eEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC-ccc
Q 010871 386 CTQDGNLSFFSVALEIQGYL-------TFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK-HSC 457 (498)
Q Consensus 386 ~s~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~-~~~ 457 (498)
-+.|-.|..|......+... ...|..-+.-...........++.+...+++|+|...|.|++|...-.. ...
T Consensus 509 ~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~ 588 (626)
T KOG2106|consen 509 NSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAP 588 (626)
T ss_pred ccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccc
Confidence 99999999994332111110 0011100000000000011112233467889999999999999875321 345
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 458 VNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 458 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
..++.+|.+.|++++|..+...|++.+.|..|..|++.
T Consensus 589 ~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~lv 626 (626)
T KOG2106|consen 589 SHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRLV 626 (626)
T ss_pred ceeeccccceeEEEEEeeCCceEEecCCCceEEEEEeC
Confidence 67888999999999999888888888899999999873
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.3e-23 Score=201.73 Aligned_cols=286 Identities=14% Similarity=0.177 Sum_probs=210.9
Q ss_pred ecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG 263 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 263 (498)
-+|+.+-+.|+|.| +|.+|++++.||.|++|+.....+....+.-+...|.+++.. +.+|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence 46788999999999 999999999999999999887434444444478888888864 559999999999999999988
Q ss_pred cEEEEEec-CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q 010871 264 DCIRVIYG-VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSI 341 (498)
Q Consensus 264 ~~~~~~~~-~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~ 341 (498)
+.-..+.. .-++.+++|+- ++.+++.|+.|-.|++.++.+......+ +|..+|.++.|+|++.+||+.+.||.|++|
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 65433332 24677888887 5689999999999999999988877777 699999999999999999999999999999
Q ss_pred EccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeE
Q 010871 342 SMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR 421 (498)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (498)
++............. .....+.+--...++|+|++..|+....|+.|++|+.......+ ...... +.
T Consensus 166 ~~~~~~~~~tl~~v~----k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f---~Lr~~~------~s 232 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVD----KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF---KLRDKL------SS 232 (933)
T ss_pred EcccchhhhhcccCC----ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe---eecccc------cc
Confidence 998655433322211 11122211122234555999999999999999999987542211 111111 11
Q ss_pred EEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEe
Q 010871 422 ASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVW 492 (498)
Q Consensus 422 ~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW 492 (498)
..|+.+.++|+|.|||+++.||.|.|||+++-. . ......|++++|.|+.+.|-.-..-|...+|
T Consensus 233 s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 233 SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE---R---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cceEEEEEcCCCcEEeeeccCCcEEEEecccch---h---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 124455555699999999999999999999722 1 2234679999999998866555445554443
No 118
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.4e-24 Score=190.95 Aligned_cols=263 Identities=14% Similarity=0.242 Sum_probs=208.7
Q ss_pred eeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCe
Q 010871 155 FSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDV 234 (498)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V 234 (498)
++...++.+++|.+.+-. ...+|+.|.+.|..|++.. ..++++|.|.+|+.|.++. .+.+++.+ ...+
T Consensus 83 aSGs~DG~VkiWnlsqR~------~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~--~p~~tilg-~s~~ 150 (433)
T KOG0268|consen 83 ASGSCDGEVKIWNLSQRE------CIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG--PPLHTILG-KSVY 150 (433)
T ss_pred hccccCceEEEEehhhhh------hhheeecccCceeeEEecc---cceEEecCCcceeeeeccC--Ccceeeec-cccc
Confidence 334445555666544322 2346789999999999964 7889999999999999985 36666654 4567
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec
Q 010871 235 TDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV 313 (498)
Q Consensus 235 ~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 313 (498)
..+.-+..+..++|||. .|.|||.+...++..+.-. ..+.++.|+|....+|++|+.|+.|.+||++++.++..+..
T Consensus 151 ~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~ 228 (433)
T KOG0268|consen 151 LGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL 228 (433)
T ss_pred cccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee
Confidence 77887777788999986 4999999988888888754 67899999999999999999999999999999999999988
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEE
Q 010871 314 DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLS 393 (498)
Q Consensus 314 ~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~ 393 (498)
...-+.++|+|.+-.|++|++|..++.||++.....+ ....+|.+.|.++.|+ |.|+.|++||.|.+|+
T Consensus 229 ~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~------~v~~dhvsAV~dVdfs-----ptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 229 TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL------NVHKDHVSAVMDVDFS-----PTGQEFVSGSYDKSIR 297 (433)
T ss_pred eccccceecCccccceeeccccccceehhhhhhcccc------hhhcccceeEEEeccC-----CCcchhccccccceEE
Confidence 8888999999988899999999999999998644332 3347888899999887 9999999999999999
Q ss_pred EEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 394 FFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 394 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
||.++.+.. +.........+.+++.|+. |.+||++||.|+.|++|....
T Consensus 298 If~~~~~~S-----RdiYhtkRMq~V~~Vk~S~-----Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 298 IFPVNHGHS-----RDIYHTKRMQHVFCVKYSM-----DSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred EeecCCCcc-----hhhhhHhhhheeeEEEEec-----cccEEEecCCCcceeeeecch
Confidence 999875421 1111112222334446666 999999999999999998764
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.8e-22 Score=189.97 Aligned_cols=286 Identities=16% Similarity=0.217 Sum_probs=218.6
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecC-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGH-SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDC 265 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 265 (498)
..+|+||||+. ..+.||.+-.||.|.||++...--+...+.++ ...|.+++|++ +..|+|.+.+|.|.-||+.+++.
T Consensus 25 Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence 57899999999 77889999999999999999866666677765 46799999994 55899999999999999999999
Q ss_pred EEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe---ecCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q 010871 266 IRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL---VVDSEVTSMDHDHTGQLLFCGDAQGCIYSI 341 (498)
Q Consensus 266 ~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~ 341 (498)
+..+...+ .+.+++.+|. ...+++|+.||.+..++...++..... ...+.|.+++|++++..++.|+.||.|++|
T Consensus 103 ~~~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eEEecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 98888764 6779999994 578888999998888888888776654 345889999999999999999999999999
Q ss_pred EccCCccccccccccccc-CCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeee
Q 010871 342 SMESHSGALSRSHRHRTT-GKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSI 420 (498)
Q Consensus 342 d~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
|................. .....-|.++.+. ....|++|..-|+|.+||...+.. ......+
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L------rd~tI~sgDS~G~V~FWd~~~gTL-----------iqS~~~h 244 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFL------RDSTIASGDSAGTVTFWDSIFGTL-----------IQSHSCH 244 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEe------ecCcEEEecCCceEEEEcccCcch-----------hhhhhhh
Confidence 997665444222111111 1233445555553 466799999999999999875421 1111122
Q ss_pred EEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCcc--ceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 421 RASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHS--CVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
.+...+++..+++.++++++.|+.|..|...+.+.+ .......|...|.+++..++ .|++||.|+.+.+-..
T Consensus 245 ~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 245 DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred hcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 223334444468899999999999999988775432 22334578889999999866 8999999999887544
No 120
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-21 Score=189.56 Aligned_cols=300 Identities=19% Similarity=0.296 Sum_probs=211.7
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCC-EEEEEeCCCcEEE
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQ-YIASSSMDKTVRV 257 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~i 257 (498)
+.+.|.++.+.|+++.=+| --+.+|.|..+|+|.|+++.. .+.+..|+...+.|+.++|.-||. .|++|+..|.+.+
T Consensus 194 ~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred EEEEecccccceeEeccCC-cceEEEEeccCceEEEEEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence 4567889999999999999 888999999999999999998 888888985569999999999996 5667777799999
Q ss_pred EECCCCcEEEEEe-cC-CCeEEEEEEcCCCcEEEEEeCCCcEEEE--E--------------------------------
Q 010871 258 WELTKGDCIRVIY-GV-SSQLCIRFHPVNNNFLSVGNANKEITVF--N-------------------------------- 301 (498)
Q Consensus 258 wd~~~~~~~~~~~-~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iw--d-------------------------------- 301 (498)
||++..+.+..+. .| +++....|.| +...+++++.|..+++| |
T Consensus 272 wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~i 350 (910)
T KOG1539|consen 272 WDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFI 350 (910)
T ss_pred EEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEE
Confidence 9999877655554 23 3444555555 34455555555444444 2
Q ss_pred -------------cC-----------------------------------------------------------------
Q 010871 302 -------------FS----------------------------------------------------------------- 303 (498)
Q Consensus 302 -------------~~----------------------------------------------------------------- 303 (498)
+.
T Consensus 351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~ 430 (910)
T KOG1539|consen 351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR 430 (910)
T ss_pred EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence 11
Q ss_pred CCcE-EEEeec------CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeE
Q 010871 304 TGRI-IKKLVV------DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSL 376 (498)
Q Consensus 304 ~~~~-~~~~~~------~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 376 (498)
.... ...+.+ ...+++++.++.|++.+.|+..|.|-+|++.+.-..... .....|..+|+++...
T Consensus 431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf----~~~~ah~~~V~gla~D---- 502 (910)
T KOG1539|consen 431 NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF----GDSPAHKGEVTGLAVD---- 502 (910)
T ss_pred CcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc----ccCccccCceeEEEec----
Confidence 0000 000111 245788999999999999999999999998654221111 1136889999998876
Q ss_pred cCCCcEEEEEEcCCcEEEEEccccccc-eeeEeEe-----------------------------eccCCceeeeEEEEee
Q 010871 377 LAGGPVLLTCTQDGNLSFFSVALEIQG-YLTFRCS-----------------------------LKLAPRVHSIRASFCP 426 (498)
Q Consensus 377 s~~~~~l~t~s~dg~i~iwd~~~~~~~-~~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 426 (498)
.-++.+++++.+|.+++||....... .+..... .........+......
T Consensus 503 -~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 503 -GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred -CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 66788999999999999998754300 0000000 0000011111122334
Q ss_pred eeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC-CeEEEee
Q 010871 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY-GIVIVWK 493 (498)
Q Consensus 427 ~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-g~i~iW~ 493 (498)
+++++||++|++++.|++|++||+.++. ++-.+. -..+.+++.|+|+|.+|||...| .-|++|.
T Consensus 582 ~~FS~DgrWlisasmD~tIr~wDlpt~~--lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDSTIRTWDLPTGT--LIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eEeCCCCcEEEEeecCCcEEEEeccCcc--eeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 5555699999999999999999999965 344332 35788999999999999999998 6799995
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.7e-24 Score=204.03 Aligned_cols=287 Identities=15% Similarity=0.240 Sum_probs=213.2
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC---ceeEEeecCC---CCeEEEEEcc-CCCEEEEEeC
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP---KVIKLLNGHS---KDVTDFDFSS-NNQYIASSSM 251 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~---~~~~~~~~h~---~~V~~l~~s~-~~~~l~s~s~ 251 (498)
+++.++++ ..+|...+ +-..|+.++. ..++||.+.... .+...+.... -.+..+.|.. +.++|++++.
T Consensus 34 ~~~~~k~~---~nAIs~nr-~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~ 108 (839)
T KOG0269|consen 34 MNCKLKAK---ANAISVNR-DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST 108 (839)
T ss_pred eeeecccc---cceEeecC-CcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC
Confidence 45555555 45666667 6666666664 457788776422 1222222211 2345577764 4579999999
Q ss_pred CCcEEEEECCC---CcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCC-
Q 010871 252 DKTVRVWELTK---GDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHT- 325 (498)
Q Consensus 252 dg~v~iwd~~~---~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~- 325 (498)
.|.|.+||+.. .+.+..+..|. .+.++.|++...++|++|+.||+|++||++..+...++ .....|..+.|+|.
T Consensus 109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY 188 (839)
T ss_pred CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC
Confidence 99999999987 56666777775 78899999999999999999999999999988877776 46678999999985
Q ss_pred CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccccccee
Q 010871 326 GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYL 405 (498)
Q Consensus 326 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~ 405 (498)
+..|+++...|.+.+||++....-.. .+.+|.++|.++.|+ |++.+|+||+.|+.|+|||+........
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~------k~~AH~GpV~c~nwh-----Pnr~~lATGGRDK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEK------KLTAHNGPVLCLNWH-----PNREWLATGGRDKMVKIWDMTDSRAKPK 257 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHH------HhhcccCceEEEeec-----CCCceeeecCCCccEEEEeccCCCccce
Confidence 56899999999999999986543332 247999999999998 9999999999999999999986433221
Q ss_pred eEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeC--CCcEEEEECCCCCccceeeecCCCCCeEEEEEcC-CCCEEEE
Q 010871 406 TFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE--DSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH-GENLLAS 482 (498)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~--dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s 482 (498)
. .......+. ++.|-| ....+|++++. |-.|+|||++.+- .+...+..|...++.++|.. |...|.+
T Consensus 258 ~---tInTiapv~--rVkWRP----~~~~hLAtcsmv~dtsV~VWDvrRPY-IP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 258 H---TINTIAPVG--RVKWRP----ARSYHLATCSMVVDTSVHVWDVRRPY-IPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred e---EEeecceee--eeeecc----CccchhhhhhccccceEEEEeecccc-ccceeeeccCccccceeccCCCceeeEe
Confidence 1 111222222 236776 24456777665 6789999999764 46788999999999999975 5568899
Q ss_pred EeCCCeEEE
Q 010871 483 SDLYGIVIV 491 (498)
Q Consensus 483 ~~~Dg~i~i 491 (498)
++.||+|..
T Consensus 328 ~sKD~tv~q 336 (839)
T KOG0269|consen 328 CSKDGTVLQ 336 (839)
T ss_pred ecCccHHHH
Confidence 999998764
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.6e-23 Score=174.81 Aligned_cols=260 Identities=18% Similarity=0.246 Sum_probs=192.5
Q ss_pred EeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC---cEEEEEecCC-CeEEEEE-EcCCCcEEEEEeCCCcEEEE
Q 010871 226 LLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG---DCIRVIYGVS-SQLCIRF-HPVNNNFLSVGNANKEITVF 300 (498)
Q Consensus 226 ~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~-~v~~i~~-~~~~~~~l~~g~~dg~i~iw 300 (498)
.-..|.+.|..+...--|+.|+||+.|++|+|+.++.. +.+.++.+|. ++..++| +|.-+.+|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34579999999888888999999999999999999854 4678888885 6778887 55567899999999999999
Q ss_pred EcCCCcEEEEe---ecCCCeEEEEEcCCC--CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEee
Q 010871 301 NFSTGRIIKKL---VVDSEVTSMDHDHTG--QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFS 375 (498)
Q Consensus 301 d~~~~~~~~~~---~~~~~i~~l~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 375 (498)
.-..++-.+.. .|...|++++|.|.+ -.|++++.||.|.+.+.+...+-... +....|.-.|+++.|.+-.
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~----ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS----KIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch----hhhhccccccceeeecCcC
Confidence 99888544333 488999999998864 58999999999999998766222111 2236788889999887532
Q ss_pred Ec---------CCCcEEEEEEcCCcEEEEEccccccceeeEeE-eeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcE
Q 010871 376 LL---------AGGPVLLTCTQDGNLSFFSVALEIQGYLTFRC-SLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNV 445 (498)
Q Consensus 376 ~s---------~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I 445 (498)
.. ..-+.|++|+.|..|+||+..... ....+ ...+..-+.. ++|+|..-. -..+||+++.||+|
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~---w~~e~~l~~H~dwVRD--VAwaP~~gl-~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS---WKLERTLEGHKDWVRD--VAWAPSVGL-PKSTIASCSQDGTV 235 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcc---hhhhhhhhhcchhhhh--hhhccccCC-CceeeEEecCCCcE
Confidence 11 011579999999999999988641 11111 1122222222 377774332 24689999999999
Q ss_pred EEEECCCCCcc-ceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 446 YFYDLAKPKHS-CVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 446 ~iwd~~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.||.......+ ....+......+..+.|+..|++|+.++.|+.|.+|.-+
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 99988743111 122233456789999999999999999999999999754
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3.1e-23 Score=189.62 Aligned_cols=280 Identities=10% Similarity=0.165 Sum_probs=214.7
Q ss_pred ecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC--ceeEEeec--CCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP--KVIKLLNG--HSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~--~~~~~~~~--h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
-.|..-|.++.+|. ..+.+.||+. |.|+|||+..++ ..+..+.. ...-|.++...|||+.|++|+.-.++.|||
T Consensus 416 L~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 416 LAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 45778888899998 7889999886 669999998642 23344432 456799999999999999999999999999
Q ss_pred CCCCcEEEE--EecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCC
Q 010871 260 LTKGDCIRV--IYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQ 335 (498)
Q Consensus 260 ~~~~~~~~~--~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d 335 (498)
+........ +... .....++.+|+ .++.+++..||.|.|||+.+...++.+ +|...+.||.++++|..|.+|+-|
T Consensus 494 LAapTprikaeltssapaCyALa~spD-akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 986543322 2222 23457888884 577888889999999999999999999 589999999999999999999999
Q ss_pred CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCC
Q 010871 336 GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAP 415 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 415 (498)
.+|+.||++....... ....+.|.++.+. |.+.+|++|-..+.+.+.......+-.+ +..
T Consensus 573 ntvRcWDlregrqlqq--------hdF~SQIfSLg~c-----P~~dWlavGMens~vevlh~skp~kyql-------hlh 632 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQ--------HDFSSQIFSLGYC-----PTGDWLAVGMENSNVEVLHTSKPEKYQL-------HLH 632 (705)
T ss_pred cceeehhhhhhhhhhh--------hhhhhhheecccC-----CCccceeeecccCcEEEEecCCccceee-------ccc
Confidence 9999999986543322 1234556666665 9999999999999988887764321111 111
Q ss_pred ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 416 RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
..-.+...|.+ .|+++++.+.|..+..|...-+. .+...+ ..+.|.++.++-|.++|+||+.|....||.+
T Consensus 633 eScVLSlKFa~-----cGkwfvStGkDnlLnawrtPyGa--siFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 633 ESCVLSLKFAY-----CGKWFVSTGKDNLLNAWRTPYGA--SIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccEEEEEEecc-----cCceeeecCchhhhhhccCcccc--ceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 12223334444 89999999999999999988743 354444 3678999999999999999999998888875
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.5e-23 Score=188.02 Aligned_cols=207 Identities=19% Similarity=0.314 Sum_probs=177.2
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-----
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT----- 261 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~----- 261 (498)
.++|.|++-+| .|.+|+.|+..|.|++|.+.+ +.++..+.+|-..|+|+.|+.||.+|+|||.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelss-G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 81 PGPVHALASSN-LGYFLLAGTISGNLYLWELSS-GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccceeeeecCC-CceEEEeecccCcEEEEEecc-ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 67899999999 999999999999999999999 88898999999999999999999999999999999999864
Q ss_pred ----CCcEEEEEecCC-CeEEEEEEcC-CCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCC
Q 010871 262 ----KGDCIRVIYGVS-SQLCIRFHPV-NNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQ 335 (498)
Q Consensus 262 ----~~~~~~~~~~~~-~v~~i~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 335 (498)
+-+.++.+..|. +|..+...+. -...+++++.|.++++||+..+..+..+..+..+.+++++|.++.+++|+.+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCc
Confidence 235677788886 6777766653 2468999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCccccc---------ccccccccCCCcc--ceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 336 GCIYSISMESHSGALS---------RSHRHRTTGKRKC--PVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~---------~~~~~~~~~~~~~--~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
|.|.+.++....+... .......+.+|.. +|+|+.++ .||..|++|+.||.++|||+...
T Consensus 239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-----~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-----TDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe-----cCccEEEeeCCCCCEEEEecchH
Confidence 9999988765442211 1122233566776 88888877 99999999999999999998753
No 125
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.6e-23 Score=197.21 Aligned_cols=317 Identities=15% Similarity=0.192 Sum_probs=229.4
Q ss_pred eeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC-ceeEEeecCC
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP-KVIKLLNGHS 231 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~-~~~~~~~~h~ 231 (498)
..|....+..++.|.........-......++.|.+-|+.++... +++.|++++.|-+|++|+..... -+..++..|.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~ 117 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK 117 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhhccc
Confidence 445555566666665544333211112335788999999999998 88999999999999999998743 5677888999
Q ss_pred CCeEEEEE-ccCCCEEEEEeCCCcEEEEECCCC--cEEEEEe---------cC-CCeEEEEEEcCCCcEEEEEeCCCcEE
Q 010871 232 KDVTDFDF-SSNNQYIASSSMDKTVRVWELTKG--DCIRVIY---------GV-SSQLCIRFHPVNNNFLSVGNANKEIT 298 (498)
Q Consensus 232 ~~V~~l~~-s~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~---------~~-~~v~~i~~~~~~~~~l~~g~~dg~i~ 298 (498)
+-|.|+++ .++..++||||.|+.|.+||++++ +.+..+. ++ .++.+++..+. +.++++|+..+.|+
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEKDLR 196 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc-ceEEEecCcccceE
Confidence 99999999 778889999999999999999988 3333322 22 46788888884 47999999999999
Q ss_pred EEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEc
Q 010871 299 VFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLL 377 (498)
Q Consensus 299 iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s 377 (498)
+||.++++.+..+ +|...|..+..+++|..+++++.||+|++||+..+.+... ...|+..|.++...
T Consensus 197 ~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T-------~~vH~e~VWaL~~~----- 264 (735)
T KOG0308|consen 197 LWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT-------YIVHKEGVWALQSS----- 264 (735)
T ss_pred EeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee-------EEeccCceEEEeeC-----
Confidence 9999999887777 6999999999999999999999999999999976554433 35677778888766
Q ss_pred CCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC---
Q 010871 378 AGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK--- 454 (498)
Q Consensus 378 ~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~--- 454 (498)
++=..+++|+.||.|..=|+++.... ...|.. ..++..+... .+.+-+-+++.|+.|+-|-..-..
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~~~~--tlick~--daPv~~l~~~-------~~~~~~WvtTtds~I~rW~~~~~~~l~ 333 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNPAKS--TLICKE--DAPVLKLHLH-------EHDNSVWVTTTDSSIKRWKLEPDIALS 333 (735)
T ss_pred CCcceEEecCCCCcEEecccCCchhh--eEeecC--CCchhhhhhc-------cccCCceeeeccccceecCCccccccc
Confidence 88899999999999999999864222 222222 2222222111 123334666778888888654210
Q ss_pred --ccc----------e--------eeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 455 --HSC----------V--------NKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 455 --~~~----------~--------~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
..+ . ..+.| ..+|...+.-.|.++++|=...|.+.+||+-
T Consensus 334 ~s~~~~~~~T~~~~~~~~~~~tp~~vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl 393 (735)
T KOG0308|consen 334 VSGDLDFFSTDSNNHSCDLTNTPDSVIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDIL 393 (735)
T ss_pred cCCCCCcccccCCCccccccCCCceeccC-chhhhhhhhhcCcceEeeecCCCCEEEEEee
Confidence 000 0 00111 1123334445578899999999999999974
No 126
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=5.7e-23 Score=188.52 Aligned_cols=261 Identities=15% Similarity=0.236 Sum_probs=185.3
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc----EEEEEecC--CCeEEEEEEcCCCcEEEEEeCC
Q 010871 221 PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD----CIRVIYGV--SSQLCIRFHPVNNNFLSVGNAN 294 (498)
Q Consensus 221 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~--~~v~~i~~~~~~~~~l~~g~~d 294 (498)
......+++|+..|.++++.|.|..|++||.|.+|++||+.... ..+.+... ..+.++.|++.++.+| +.+..
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iL-vvsg~ 235 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQIL-VVSGS 235 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEE-EEecC
Confidence 34456788999999999999999999999999999999998542 23333322 3678999999765544 45567
Q ss_pred CcEEEEEcCCCcEEEEe-------------ecCCCeEEEEEcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccC
Q 010871 295 KEITVFNFSTGRIIKKL-------------VVDSEVTSMDHDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTG 360 (498)
Q Consensus 295 g~i~iwd~~~~~~~~~~-------------~~~~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 360 (498)
...+|+|-...+.+... +|-..++|.+|+|..+ .|++++.||++++|+++....... ....+...
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q-Vik~k~~~ 314 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ-VIKTKPAG 314 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee-EEeeccCC
Confidence 78999996544433322 2567789999999875 789999999999999986553322 22222234
Q ss_pred CCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEe
Q 010871 361 KRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGS 440 (498)
Q Consensus 361 ~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs 440 (498)
+..-+++++.|. ++|++|++|..||.|.+|+....... ........+.... ..+++.|+.+|++|++-+
T Consensus 315 g~Rv~~tsC~~n-----rdg~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~-----~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 315 GKRVPVTSCAWN-----RDGKLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQ-----DITSISFSYDGNYLLSRG 383 (641)
T ss_pred CcccCceeeecC-----CCcchhhhcccCCceeeeecCCcccc-cceEeeeccCCCC-----ceeEEEeccccchhhhcc
Confidence 556677777776 99999999999999999997543211 1111111222211 223333444999999999
Q ss_pred CCCcEEEEECCCCCccceeeecCC--CCCeEEEEEcCCCCEEEEEeC------CCeEEEeecC
Q 010871 441 EDSNVYFYDLAKPKHSCVNKLQGH--RFPVVAVAWNHGENLLASSDL------YGIVIVWKRA 495 (498)
Q Consensus 441 ~dg~I~iwd~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~s~~~------Dg~i~iW~~~ 495 (498)
.|+++++||++..+ +++....+- .-+-+.++|+|+.++|++|.. .|.+.+||..
T Consensus 384 ~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred CCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 99999999999864 344444432 234678999999999999864 4778888754
No 127
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.7e-22 Score=178.16 Aligned_cols=301 Identities=15% Similarity=0.198 Sum_probs=220.4
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC-----CceeEEee-cCCCCeEEEEEccCCCEEEEEeCCCcE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP-----PKVIKLLN-GHSKDVTDFDFSSNNQYIASSSMDKTV 255 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~-----~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~s~dg~v 255 (498)
-+.+|.+.|+++.|+. ++++||+|+.|..++||++... .+++.... .|...|.|++|...++.|++|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 3578999999999999 8999999999999999998631 23444333 466899999999999999999999999
Q ss_pred EEEECCCCcEEEEEecCC---CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc----EEEEeecCCCeEEEEEcCCCC-
Q 010871 256 RVWELTKGDCIRVIYGVS---SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR----IIKKLVVDSEVTSMDHDHTGQ- 327 (498)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~~~~i~~l~~~~~~~- 327 (498)
.+.|+++.+.+..+.... .|..+..+|. .+++++.+.++.|.+||.+... ++...........+.|+|...
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 999999999998887664 7899999997 5888889999999999998654 333334567788899999765
Q ss_pred EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeE
Q 010871 328 LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTF 407 (498)
Q Consensus 328 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 407 (498)
+|++.+..+-+-+||.+.....+.+......+........++. |+++|+.|++--....-.+||+......
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~-----~~~~G~Q~msiRR~~~P~~~D~~S~R~~---- 279 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL-----WSPSGNQFMSIRRGKCPLYFDFISQRCF---- 279 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee-----eCCCCCeehhhhccCCCEEeeeecccce----
Confidence 7788899999999999877665544322222222222223344 4499999988877777778887643211
Q ss_pred eEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC---------------------ccceeeecCCCC
Q 010871 408 RCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK---------------------HSCVNKLQGHRF 466 (498)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~---------------------~~~~~~~~~h~~ 466 (498)
.....+.+....-.+..-.+++. +..-+++|+.+-.|++|.+.... ...+..++||.+
T Consensus 280 V~k~D~N~~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS 358 (609)
T KOG4227|consen 280 VLKSDHNPNGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS 358 (609)
T ss_pred eEeccCCCCcceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc
Confidence 11111111111111111122222 45559999999999999885321 012456789999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 467 PVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 467 ~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
.++.|.|+|...+|++.|....++||.-
T Consensus 359 v~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 359 VPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccceeecCCcceEeccchhhheecccc
Confidence 9999999999999999999999999963
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=2.6e-21 Score=177.30 Aligned_cols=279 Identities=14% Similarity=0.223 Sum_probs=211.5
Q ss_pred eeeeeccc-ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 180 HCIFDQCK-AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 180 ~~~~~~h~-~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
+.+|+++. .-|.|++|.+ +| -++||..+|.|.||+..+ .+..+....|.+.|.+++...+|. |+||+.|+.|..|
T Consensus 238 ~~~fek~ekk~Vl~v~F~e-ng-dviTgDS~G~i~Iw~~~~-~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~W 313 (626)
T KOG2106|consen 238 QGIFEKREKKFVLCVTFLE-NG-DVITGDSGGNILIWSKGT-NRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILW 313 (626)
T ss_pred eeccccccceEEEEEEEcC-CC-CEEeecCCceEEEEeCCC-ceEEeEeeecCCceEEEEEecCcc-EeecCccceEEec
Confidence 34455543 5699999998 55 578999999999999977 566666669999999999999995 5569999999999
Q ss_pred ECCCCcEEEEEecC---CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCC
Q 010871 259 ELTKGDCIRVIYGV---SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQ 335 (498)
Q Consensus 259 d~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 335 (498)
| ..-+.++..... +.+..++-.. + -|++|...+.|..=.++++-.+..+.|......++.+|+.+.+++++.|
T Consensus 314 d-~~y~k~r~~elPe~~G~iRtv~e~~--~-di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd 389 (626)
T KOG2106|consen 314 D-DNYRKLRETELPEQFGPIRTVAEGK--G-DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD 389 (626)
T ss_pred c-ccccccccccCchhcCCeeEEecCC--C-cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCc
Confidence 9 444444444332 3455444322 2 2778888888888888888888888999999999999999999999999
Q ss_pred CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCC
Q 010871 336 GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAP 415 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 415 (498)
+.+++|+ ....... ..-..+..++.|+ |.| .++.|+..|...+.|.++.. ..... ....
T Consensus 390 k~v~lW~--~~k~~wt--------~~~~d~~~~~~fh-----psg-~va~Gt~~G~w~V~d~e~~~----lv~~~-~d~~ 448 (626)
T KOG2106|consen 390 KHVRLWN--DHKLEWT--------KIIEDPAECADFH-----PSG-VVAVGTATGRWFVLDTETQD----LVTIH-TDNE 448 (626)
T ss_pred ceEEEcc--CCceeEE--------EEecCceeEeecc-----Ccc-eEEEeeccceEEEEecccce----eEEEE-ecCC
Confidence 9999997 2222222 2234567777777 888 99999999999999987531 11111 1133
Q ss_pred ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 416 RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
.+..+ .|+| +|.+||.|+.|+.|+||.+..........-+.|..+|+.+.|++|+++|.+-+.|-.|..|.-
T Consensus 449 ~ls~v--~ysp-----~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 449 QLSVV--RYSP-----DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred ceEEE--EEcC-----CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 33333 5555 999999999999999999987654433333445589999999999999999999999999943
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-23 Score=201.93 Aligned_cols=244 Identities=20% Similarity=0.295 Sum_probs=188.1
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC--CceeEEeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCcE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDP--PKVIKLLNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELTKGDC 265 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~~~~~ 265 (498)
.+..|+|+....++|||++..|.|.+||+... .+.+..|..|...|.+++|++.. .+|+|||.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 34567888778899999999999999999863 34556788999999999999854 6899999999999999999888
Q ss_pred EEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc-EEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEE
Q 010871 266 IRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR-IIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSIS 342 (498)
Q Consensus 266 ~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d 342 (498)
..++.+. ..+..+.|+|..++.++++...|.+.+||++... +...+ .|.++|.|+.|+|++.+||+|+.|+.|++|+
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 8887776 4788999999999999999999999999998764 34444 5999999999999999999999999999999
Q ss_pred ccCCcccccccccccccCCCccceeeEEEeEeeEcCCC-cEEEEEE--cCCcEEEEEccccccceeeEeEeeccCCceee
Q 010871 343 MESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG-PVLLTCT--QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHS 419 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~-~~l~t~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 419 (498)
+.......... .....+|..+.|. |.. ..|++++ .|-.|+|||++...-++.. ...+...+..
T Consensus 249 ~t~~~~~~~~t------InTiapv~rVkWR-----P~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t---~~eH~~~vt~ 314 (839)
T KOG0269|consen 249 MTDSRAKPKHT------INTIAPVGRVKWR-----PARSYHLATCSMVVDTSVHVWDVRRPYIPYAT---FLEHTDSVTG 314 (839)
T ss_pred ccCCCccceeE------Eeecceeeeeeec-----cCccchhhhhhccccceEEEEeecccccccee---eeccCccccc
Confidence 97543332221 2345678889998 554 4566665 4778999999855333332 2233333333
Q ss_pred eEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 420 IRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
+ +|.. .|...+.+++.||+|..-.+++
T Consensus 315 i--~W~~----~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 315 I--AWDS----GDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred e--eccC----CCceeeEeecCccHHHHhhhhc
Confidence 3 3332 2567788899998877655554
No 130
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-22 Score=192.00 Aligned_cols=202 Identities=20% Similarity=0.263 Sum_probs=175.9
Q ss_pred eec-ccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 010871 183 FDQ-CKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 183 ~~~-h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 261 (498)
+.+ |...|-|++|. +..+.+|+.||.|..+|+.........+.+|...|..+.|++|+.+|++|+.|+.+.|||..
T Consensus 255 ~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred ccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence 344 89999999996 58999999999999999998555555689999999999999999999999999999999998
Q ss_pred CCcEEEEEecCC-CeEEEEEEcCCCcEEEEEe--CCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEE--cCCC
Q 010871 262 KGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGN--ANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCG--DAQG 336 (498)
Q Consensus 262 ~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~--~~dg 336 (498)
....+..+..|. .|..++|+|....+||+|+ .|++|++||..+++.+..+.....|..|.|++..+.|+++ ..++
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCC
Confidence 778888887775 7889999999999999974 7899999999999999999999999999999999877654 5677
Q ss_pred eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 337 CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
.|.+|+....... ....+|...|..+.++ |+|..+++|+.|.++++|++-.
T Consensus 412 ~i~lw~~ps~~~~-------~~l~gH~~RVl~la~S-----Pdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 412 QITLWKYPSMKLV-------AELLGHTSRVLYLALS-----PDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cEEEEecccccee-------eeecCCcceeEEEEEC-----CCCCEEEEecccCcEEeccccC
Confidence 8999998763322 2247888888887776 9999999999999999999864
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=192.08 Aligned_cols=247 Identities=16% Similarity=0.271 Sum_probs=191.4
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-cEEEEEe-cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC
Q 010871 228 NGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG-DCIRVIY-GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG 305 (498)
Q Consensus 228 ~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~ 305 (498)
.+|....+.|+|.|+|.+|++++.||.|++|+.... ..-.++. ....+.+++.. ...|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCCC
Confidence 468999999999999999999999999999997755 3334444 33455566553 358999999999999999888
Q ss_pred cEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEE
Q 010871 306 RIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLL 384 (498)
Q Consensus 306 ~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~ 384 (498)
+.-..+ ...-++.+++++.+|.+++.|+.|-.|++.++........ +.+|..+|.++.+. |.+++|+
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~-------lrgh~apVl~l~~~-----p~~~fLA 154 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV-------LRGHDAPVLQLSYD-----PKGNFLA 154 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee-------ecccCCceeeeeEc-----CCCCEEE
Confidence 765444 4667899999999999999999999999998876554332 48899999999988 9999999
Q ss_pred EEEcCCcEEEEEccccccceeeEeEee--ccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec
Q 010871 385 TCTQDGNLSFFSVALEIQGYLTFRCSL--KLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ 462 (498)
Q Consensus 385 t~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~ 462 (498)
+.+.||.|++||+..+........... ...........+|+| +|..++....|+.|++|+..+.. ....+.
T Consensus 155 vss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-----k~g~la~~~~d~~Vkvy~r~~we--~~f~Lr 227 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-----KGGTLAVPPVDNTVKVYSRKGWE--LQFKLR 227 (933)
T ss_pred EEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-----CCCeEEeeccCCeEEEEccCCce--eheeec
Confidence 999999999999986532211111000 011111223346666 88888888899999999999844 444443
Q ss_pred --CCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 463 --GHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 463 --~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.|...+.++.|+|.|++||+++.||.|.|||+++
T Consensus 228 ~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 228 DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 3555699999999999999999999999999873
No 132
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=1.5e-22 Score=183.63 Aligned_cols=213 Identities=15% Similarity=0.263 Sum_probs=172.9
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc------eeEEeecCCCCeEEEEEccCC-CEEEEEeCCC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK------VIKLLNGHSKDVTDFDFSSNN-QYIASSSMDK 253 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg 253 (498)
.+|.||++.=+.|+|++.....|++|+.|++|++||+..... ....+.+|...|..++|++-. .+|++++.|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 367888887888999998888999999999999999986332 456788999999999999954 5788999999
Q ss_pred cEEEEECC--CCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc-EEEEe-ecCCCeEEEEEcCCCC-
Q 010871 254 TVRVWELT--KGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR-IIKKL-VVDSEVTSMDHDHTGQ- 327 (498)
Q Consensus 254 ~v~iwd~~--~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~-~~~~~i~~l~~~~~~~- 327 (498)
.+.|||++ +.+.......| ..+.|++|+|.+..+|++|+.|++|.+||++..+ ++..+ .|...|.++.|+|...
T Consensus 251 ~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~et 330 (422)
T KOG0264|consen 251 KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNET 330 (422)
T ss_pred eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCc
Confidence 99999999 45566666666 4789999999999999999999999999998754 45555 6899999999999865
Q ss_pred EEEEEcCCCeEEEEEccCCcccccc-------cccccccCCCccceeeEEEeEeeEcCCCc-EEEEEEcCCcEEEEEcc
Q 010871 328 LLFCGDAQGCIYSISMESHSGALSR-------SHRHRTTGKRKCPVTTVQYRSFSLLAGGP-VLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 328 ~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~s~~~~-~l~t~s~dg~i~iwd~~ 398 (498)
.|++++.|+.+.+||+..-...... ....-...+|...|..+.|. |... .+++.+.|+.+.||...
T Consensus 331 vLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn-----p~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 331 VLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN-----PNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCC-----CCCCeEEEEecCCceEEEeecc
Confidence 7889999999999999754433210 00112237888888888777 6665 46778899999999986
No 133
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.2e-22 Score=173.15 Aligned_cols=276 Identities=15% Similarity=0.239 Sum_probs=201.7
Q ss_pred CceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcC------CC---
Q 010871 150 SHRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVS------DP--- 220 (498)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~------~~--- 220 (498)
.+++.-.++.+...++|.+...... ..+.||.+.|+|++|++ .+.++++++.|++..||... .+
T Consensus 159 tqpi~gtASADhTA~iWs~Esg~CL------~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~ 231 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSLESGACL------ATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAP 231 (481)
T ss_pred CCcceeecccccceeEEeeccccce------eeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCC
Confidence 3344555555666666644433221 24689999999999999 99999999999999999721 10
Q ss_pred ------------------------------CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 010871 221 ------------------------------PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIY 270 (498)
Q Consensus 221 ------------------------------~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 270 (498)
..++..|.+|.+.|.+..|...|+.+++++.|.+..+||+++|..+..+.
T Consensus 232 ~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt 311 (481)
T KOG0300|consen 232 SDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT 311 (481)
T ss_pred CCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc
Confidence 01456788999999999999999999999999999999999999999999
Q ss_pred cCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-cEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCc
Q 010871 271 GVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-RIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 271 ~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~ 347 (498)
+|. ....++-+| ...++++.+.|.+.++||++.. ..+..| +|...|+++.|..+ ..+++|+.|.+|++||++...
T Consensus 312 GHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 312 GHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred CcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeecccc
Confidence 996 455677777 6689999999999999999843 345555 58899999999865 568999999999999998655
Q ss_pred ccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeee
Q 010871 348 GALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPL 427 (498)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (498)
..+.. ....++++.+.++ ..++.++.-..+..|++||+.......+...... .++-..+++
T Consensus 390 splAT-------IRtdS~~NRvavs-----~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq-------gHrRMV~c~ 450 (481)
T KOG0300|consen 390 SPLAT-------IRTDSPANRVAVS-----KGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ-------GHRRMVTCC 450 (481)
T ss_pred Cccee-------eecCCccceeEee-----cCCceEEeccCCceEEEEecCCCccccCCccccc-------ccceeeeee
Confidence 44322 2234556666554 6777888888899999999985432221111111 111112222
Q ss_pred eeccC--CCEEEEEeCCCcEEEEECCCC
Q 010871 428 LSLEK--GEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 428 ~~~~~--~~~l~~gs~dg~I~iwd~~~~ 453 (498)
++..+ -.-|++++.|..+.=|.+..+
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eccccCcccccccccccceeeeeEeccc
Confidence 22211 234788889999999998764
No 134
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.8e-22 Score=181.03 Aligned_cols=246 Identities=16% Similarity=0.241 Sum_probs=184.4
Q ss_pred EEEEEecC------CCCEEEEEeCCCcEEEEEcCCC--CceeE------------------EeecCCCCeEEEEEccCC-
Q 010871 191 TILKFGHM------SSDLLAYGASDGTLTVCTVSDP--PKVIK------------------LLNGHSKDVTDFDFSSNN- 243 (498)
Q Consensus 191 ~~v~~sp~------~~~~lasg~~dg~i~iwd~~~~--~~~~~------------------~~~~h~~~V~~l~~s~~~- 243 (498)
.|++|... -|+++|.|..|..|.|||+.-- -.+.. .-.+|+..|.+|+|+..-
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 56666431 3569999999999999998621 11111 123699999999998754
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-cEEEEeecCCCeEEEE
Q 010871 244 QYIASSSMDKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-RIIKKLVVDSEVTSMD 321 (498)
Q Consensus 244 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~i~~l~ 321 (498)
..|+|||.|.+|++||+.++++..++..| ..|.++.|+|....+|++|+.|++|.+.|.+.. ..-..++..+.|..++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 58999999999999999999999999976 478999999999999999999999999999853 3334457788999999
Q ss_pred EcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 322 HDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 322 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
|.|... .+++++.||.|+-+|++...... .....|..+|.++.+.. ....++++++.|+.+++|++...
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~v------wt~~AHd~~ISgl~~n~----~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPV------WTLKAHDDEISGLSVNI----QTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCce------eEEEeccCCcceEEecC----CCCcceeeccccceEEEEeecCC
Confidence 998765 77889999999999998765222 23478999999998874 34568999999999999999754
Q ss_pred ccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC
Q 010871 401 IQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~ 454 (498)
..... ....+.... ..++.++| ...-+++.|+..+.++|||+.+..
T Consensus 407 ~~~~v-~~~~~~~~r---l~c~~~~~----~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 407 SPKSV-KEHSFKLGR---LHCFALDP----DVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred CCccc-ccccccccc---eeecccCC----CcceEEEecCccceEEEeecccCh
Confidence 32111 111111111 11223333 234568888888899999998753
No 135
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.3e-21 Score=169.42 Aligned_cols=207 Identities=18% Similarity=0.311 Sum_probs=172.1
Q ss_pred eeeecccccEEEEEEecCCCC--EEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 181 CIFDQCKAAVTILKFGHMSSD--LLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~--~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
..+..|.+.|+++.|.+ .-. .|++|+.||.|.+|+... -..+..+++|.+.|+.++.+|.+++-++.+.|+.+++|
T Consensus 77 g~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 77 GILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred cceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC-eEEeeeecccccccceeEecCCCceEEEEcCCceeeee
Confidence 35677899999999988 443 899999999999999988 78999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 259 ELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 259 d~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
|+-+|+.-..++.......+.|+|.+.++++.+ . ..|-+|.+.+......+..+..+.++.|. ++..|++|..++.|
T Consensus 155 NLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~-~-~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i 231 (362)
T KOG0294|consen 155 NLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG-R-NKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWI 231 (362)
T ss_pred hhhcCccceeeccCCcceeeEEcCCCCEEEEEe-c-cEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceE
Confidence 999998877777666666799999776555544 3 46899999888887777777778888886 45689999999999
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccccc
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQ 402 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~ 402 (498)
.+||.+..... ..+.+|...|-.+.+.. .+.+.+|++++.||.|++||++....
T Consensus 232 ~~~D~ds~~~~-------~~~~AH~~RVK~i~~~~---~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 232 SLKDTDSDTPL-------TEFLAHENRVKDIASYT---NPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred EEeccCCCccc-------eeeecchhheeeeEEEe---cCCceEEEEeccCceEEEEEcccccc
Confidence 99998763222 22478999998887431 26788999999999999999986543
No 136
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=5.3e-22 Score=187.35 Aligned_cols=280 Identities=18% Similarity=0.252 Sum_probs=209.0
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
.|+.++|-| +|..|+.+.. ..+.|||... +....++++|.+.|.|++|+.||+.++||+.|..|.+|+-. -+-+..
T Consensus 14 ci~d~afkP-DGsqL~lAAg-~rlliyD~nd-G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKP-DGTQLILAAG-SRLLVYDTSD-GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILK 89 (1081)
T ss_pred chheeEECC-CCceEEEecC-CEEEEEeCCC-cccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceee
Confidence 789999999 6666555543 4599999998 88999999999999999999999999999999999999854 233444
Q ss_pred EecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcc
Q 010871 269 IYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSG 348 (498)
Q Consensus 269 ~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 348 (498)
+.+...+.|+.|+|-. +.|++++- ...-+|.... +.+.+......+.+++|..||++++.|-.+|+|.+-+-.....
T Consensus 90 YSH~D~IQCMsFNP~~-h~LasCsL-sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPIT-HQLASCSL-SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eccCCeeeEeecCchH-HHhhhcch-hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 5566788899999954 66776654 3466787653 3334445567899999999999999999999999864332221
Q ss_pred cccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeee
Q 010871 349 ALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLL 428 (498)
Q Consensus 349 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (498)
... ....+..++|.+++|.+-+--.....+++..+..++.+|.+....-+ ....+ .......++.+
T Consensus 167 ~~I-----~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig-----k~r~L--~FdP~CisYf~-- 232 (1081)
T KOG1538|consen 167 VKI-----ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG-----KDRAL--NFDPCCISYFT-- 232 (1081)
T ss_pred eEE-----eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeec-----ccccC--CCCchhheecc--
Confidence 111 11267788999999985432223467888899999999988642110 01111 11222334554
Q ss_pred eccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 429 SLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 429 ~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+|.|++.|+.|+.+.+|.-+. ..+.++......|+.++..|+++.++.|+.||+|--|++.
T Consensus 233 ---NGEy~LiGGsdk~L~~fTR~G---vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 233 ---NGEYILLGGSDKQLSLFTRDG---VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ---CCcEEEEccCCCceEEEeecC---eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 999999999999999998763 3456666667899999999999999999999999988764
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=8.2e-23 Score=186.86 Aligned_cols=236 Identities=16% Similarity=0.255 Sum_probs=193.7
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc-eeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK-VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
+-|.++...| +|+.|++|+.-.++.|||+..+.. +...+..-.-...+++.+||.+..++++.||.|.|||+.+...+
T Consensus 466 nyiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 466 NYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred cceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 5678899999 999999999999999999987432 23344444456788999999999999999999999999999999
Q ss_pred EEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 267 RVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 267 ~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
+.|++|. .+.|+..+++ +..|.+|+-|.+|+-||+++++.+....+.+.|.++.++|++.++++|-+++.+.+.....
T Consensus 545 rqfqGhtDGascIdis~d-GtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred ecccCCCCCceeEEecCC-CceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 9999995 7889999884 5789999999999999999999999888999999999999999999999999998886643
Q ss_pred CcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEe
Q 010871 346 HSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFC 425 (498)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (498)
...-. ...|.+.|.++.|. +-|+++++.+.|..+..|....+.. .+........+.+.++
T Consensus 624 p~kyq--------lhlheScVLSlKFa-----~cGkwfvStGkDnlLnawrtPyGas-------iFqskE~SsVlsCDIS 683 (705)
T KOG0639|consen 624 PEKYQ--------LHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGAS-------IFQSKESSSVLSCDIS 683 (705)
T ss_pred cccee--------ecccccEEEEEEec-----ccCceeeecCchhhhhhccCccccc-------eeeccccCcceeeeec
Confidence 32221 25678888888887 8899999999999999999875532 1122222333344444
Q ss_pred eeeeccCCCEEEEEeCCCcEEEEEC
Q 010871 426 PLLSLEKGEYIVAGSEDSNVYFYDL 450 (498)
Q Consensus 426 ~~~~~~~~~~l~~gs~dg~I~iwd~ 450 (498)
. |.+||++|+.|....||.+
T Consensus 684 ~-----ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 684 F-----DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred c-----CceEEEecCCCcceEEEEE
Confidence 4 9999999999988888865
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=3.6e-20 Score=174.83 Aligned_cols=268 Identities=14% Similarity=0.152 Sum_probs=182.0
Q ss_pred eecccccEEEEEEecCCCCEE-EEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEE-eCCCcEEEEEC
Q 010871 183 FDQCKAAVTILKFGHMSSDLL-AYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASS-SMDKTVRVWEL 260 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~l-asg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-s~dg~v~iwd~ 260 (498)
+.+|. .+.+++|+| ++..+ ++++.++.|++||..+ ++....+..+.. +..++|+|+++.++++ +.++.|++||+
T Consensus 27 ~~~~~-~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 27 FPVGQ-RPRGITLSK-DGKLLYVCASDSDTIQVIDLAT-GEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDI 102 (300)
T ss_pred EECCC-CCCceEECC-CCCEEEEEECCCCeEEEEECCC-CcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 34443 467899999 77765 6778899999999987 666666665443 5788999999877654 56899999999
Q ss_pred CCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCC-cEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEE-cCCCeE
Q 010871 261 TKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANK-EITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCG-DAQGCI 338 (498)
Q Consensus 261 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i 338 (498)
.+++.+..+.....+..++|+|++ .+++++..++ .+.+||..+++.+........+.+++|+++++.|+++ ..++.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTV 181 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEE
Confidence 998888888766667889999955 5666666554 5778899988877666555667889999999988655 468999
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEE-EEcCCcEEEEEccccccceeeEeEeeccCCce
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT-CTQDGNLSFFSVALEIQGYLTFRCSLKLAPRV 417 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 417 (498)
++||+............. ...+...+ ....+.++++++++++ .+.++.+.+||+.+... . ........
T Consensus 182 ~i~d~~~~~~~~~~~~~~--~~~~~~~~---~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~---~--~~~~~~~~- 250 (300)
T TIGR03866 182 SVIDVATRKVIKKITFEI--PGVHPEAV---QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV---L--DYLLVGQR- 250 (300)
T ss_pred EEEEcCcceeeeeeeecc--cccccccC---CccceEECCCCCEEEEEcCCCCeEEEEECCCCcE---E--EEEEeCCC-
Confidence 999997543211111100 00011111 1112345599998655 45567899999875321 1 11111122
Q ss_pred eeeEEEEeeeeeccCCCEEEEE-eCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcC
Q 010871 418 HSIRASFCPLLSLEKGEYIVAG-SEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH 475 (498)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~g-s~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp 475 (498)
.....|+| +|++|+++ +.+|.|.+||+.++ .++..++.. ...+.++++|
T Consensus 251 -~~~~~~~~-----~g~~l~~~~~~~~~i~v~d~~~~--~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 251 -VWQLAFTP-----DEKYLLTTNGVSNDVSVIDVAAL--KVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred -cceEEECC-----CCCEEEEEcCCCCeEEEEECCCC--cEEEEEEcc-cccceeEeCC
Confidence 22335555 99999886 45899999999984 456777654 5568888875
No 139
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=2.1e-21 Score=184.37 Aligned_cols=307 Identities=14% Similarity=0.185 Sum_probs=221.5
Q ss_pred ceeeeecccccEEEEEEecCCC--CEEEEEeCCCcEEEEEcCCCC--------------------cee----------EE
Q 010871 179 MHCIFDQCKAAVTILKFGHMSS--DLLAYGASDGTLTVCTVSDPP--------------------KVI----------KL 226 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~--~~lasg~~dg~i~iwd~~~~~--------------------~~~----------~~ 226 (498)
....+.||++-|.+++|....+ -+||++|.|..|+||.+.-.. ... ..
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence 3557899999999999988444 389999999999999875311 011 12
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--EEEEEe----cC--CCeEEEEEEcCCCcEEEEEeCCCcEE
Q 010871 227 LNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD--CIRVIY----GV--SSQLCIRFHPVNNNFLSVGNANKEIT 298 (498)
Q Consensus 227 ~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~----~~--~~v~~i~~~~~~~~~l~~g~~dg~i~ 298 (498)
+.||.+.|.++.|+|.+..|+++|.|.++.+|.-.+.. -+-... ++ .+.....|+|+ .+.+++-+..|..+
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n-~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN-SNVIIAHGRTGGFH 341 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC-CCEEEEecccCcEE
Confidence 34999999999999999999999999999999876542 222221 11 24678899995 47888888999999
Q ss_pred EEEcCCC-cEEEE--e-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEe
Q 010871 299 VFNFSTG-RIIKK--L-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSF 374 (498)
Q Consensus 299 iwd~~~~-~~~~~--~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 374 (498)
+|-.... ..... + +|-..|..++|+|.|.+|++.+.|.+-++|---..+.. -+.....+.|.-.++|+.+.
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~---wHEiaRPQiHGyDl~c~~~v-- 416 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE---WHEIARPQIHGYDLTCLSFV-- 416 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc---eeeecccccccccceeeehc--
Confidence 9983332 11211 1 58889999999999999999999999999865422222 23333346677777887775
Q ss_pred eEcCCCcEEEEEEcCCcEEEEEccccc-------------------------------cceee------------EeEe-
Q 010871 375 SLLAGGPVLLTCTQDGNLSFFSVALEI-------------------------------QGYLT------------FRCS- 410 (498)
Q Consensus 375 ~~s~~~~~l~t~s~dg~i~iwd~~~~~-------------------------------~~~~~------------~~~~- 410 (498)
+....+++|..+..+|+|+..... +.... ....
T Consensus 417 ---n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 417 ---NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred ---cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 557788899999999999865210 00000 0000
Q ss_pred ------e---------------ccCCceeeeEEEEeeeeeccCCCEEEEEeCCC-----cEEEEECCCCCccceeeecCC
Q 010871 411 ------L---------------KLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS-----NVYFYDLAKPKHSCVNKLQGH 464 (498)
Q Consensus 411 ------~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg-----~I~iwd~~~~~~~~~~~~~~h 464 (498)
. +.......+......++.+++|+++|+++... .|++|+..+ ...+..+.+|
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~--W~~~~~L~~H 571 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN--WLQVQELEGH 571 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--hhhhheeccc
Confidence 0 00011112223444567778999999987643 599999988 5567789999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 465 RFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 465 ~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.-.|+.|+|+|||++|++.+.|.++.+|+..+
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~ 603 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQE 603 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeeeeec
Confidence 99999999999999999999999999998754
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=173.05 Aligned_cols=214 Identities=15% Similarity=0.289 Sum_probs=174.5
Q ss_pred ceeeeecccccEEEEEEecC-CCCEEEEEeCCCcEEEEEcCC---------------CCceeEEeecCCCCeEEEEEccC
Q 010871 179 MHCIFDQCKAAVTILKFGHM-SSDLLAYGASDGTLTVCTVSD---------------PPKVIKLLNGHSKDVTDFDFSSN 242 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~-~~~~lasg~~dg~i~iwd~~~---------------~~~~~~~~~~h~~~V~~l~~s~~ 242 (498)
++....+|.+.|+.+..++. +..+.|+-+..|.|.||++.. ..+++.++.+|.+.=++|+|||-
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence 44556788899999998884 334777778899999999863 13567888999999999999993
Q ss_pred C-CEEEEEeCCCcEEEEECCCCcEEE---EEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC---cEEEEeecC
Q 010871 243 N-QYIASSSMDKTVRVWELTKGDCIR---VIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG---RIIKKLVVD 314 (498)
Q Consensus 243 ~-~~l~s~s~dg~v~iwd~~~~~~~~---~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~ 314 (498)
. ..|+||..-+.|++|...+|.-.. .+.+| ..|-.++|+|.....|++|+.||.|+|||++.+ .++.+-.|.
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 2 368888888899999998875322 23345 477799999999999999999999999999998 455555689
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEE
Q 010871 315 SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSF 394 (498)
Q Consensus 315 ~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~i 394 (498)
+.|+.|.|+....+|++|+.||.+++||++..+.. .+...+..|+.+|+++.|++ .+...|++++.|.+|.+
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~----~pVA~fk~Hk~pItsieW~p----~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG----QPVATFKYHKAPITSIEWHP----HEDSVIAASGEDNQITI 374 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCC----CcceeEEeccCCeeEEEecc----ccCceEEeccCCCcEEE
Confidence 99999999999889999999999999999876544 33344688999999999995 45678899999999999
Q ss_pred EEcccc
Q 010871 395 FSVALE 400 (498)
Q Consensus 395 wd~~~~ 400 (498)
||+...
T Consensus 375 WDlsvE 380 (440)
T KOG0302|consen 375 WDLSVE 380 (440)
T ss_pred EEeecc
Confidence 999754
No 141
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=4.8e-21 Score=171.28 Aligned_cols=301 Identities=18% Similarity=0.255 Sum_probs=207.5
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC---C-----ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP---P-----KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~---~-----~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
..+|..+.|.+.+...||||+.|..|+||-+... + +....|..|...|+++.|+|+|..|+||+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 4589999999855559999999999999998742 1 2345677899999999999999999999999999999
Q ss_pred ECC--------C--------CcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEE
Q 010871 259 ELT--------K--------GDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSM 320 (498)
Q Consensus 259 d~~--------~--------~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l 320 (498)
-.. + -...+.+.+| ..+..++|.|+ +.++++++.|..+++||+..|+.+..+ .|...+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-CceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 765 2 1123445555 57889999994 589999999999999999999999888 688999999
Q ss_pred EEcCCCCEEEEEcCCCeEEEEEccCCcccccc---cccccccCCCccceeeE--------EEeEeeEcCCCcEEEEEEc-
Q 010871 321 DHDHTGQLLFCGDAQGCIYSISMESHSGALSR---SHRHRTTGKRKCPVTTV--------QYRSFSLLAGGPVLLTCTQ- 388 (498)
Q Consensus 321 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~i~~~--------~~~~~~~s~~~~~l~t~s~- 388 (498)
+|.|-++++++-+.|...+.+++......... ...........+.+..+ -|..++++|+|..|++.+.
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 99999999999888887776665432211110 01111112222233332 2456677899999988642
Q ss_pred ---CCcE-----EEEEccccccceeeEeEeeccCCceeeeEEEEeeeeec-------------cCCCEEEEEeCCCcEEE
Q 010871 389 ---DGNL-----SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSL-------------EKGEYIVAGSEDSNVYF 447 (498)
Q Consensus 389 ---dg~i-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~gs~dg~I~i 447 (498)
.+.+ ++|+-..-.. ..+.. .......+.+.++|+.+- |-+..+|.++. ..|+|
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~r----P~~~l-p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyv 325 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKR----PAARL-PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYV 325 (434)
T ss_pred eeeCCceeeceeEeeccccccC----ceeec-CCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEE
Confidence 2222 3333221100 00111 111122333455554432 33445566655 56999
Q ss_pred EECCCCCccceeee-cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 448 YDLAKPKHSCVNKL-QGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 448 wd~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
||.++.. ++... .-|-..|++++|+++|..|+..+.||...+-.+++
T Consensus 326 ydtq~~~--P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 326 YDTQTLE--PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred ecccccc--ceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 9999843 44444 34888999999999999999999999887765554
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3.4e-23 Score=197.22 Aligned_cols=202 Identities=19% Similarity=0.387 Sum_probs=163.9
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 261 (498)
.+..|...|.|+..-. .++.+++|+.|..+.+|.+.. ...+..|.+|..+|.+|.|++...+|++|+.+|+|++||++
T Consensus 23 ~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~k-p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGK-PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhhceeeeec-cceeeccCCCceeeccccccC-CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 3567888999999855 889999999999999999987 55666799999999999999999999999999999999999
Q ss_pred CCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEE
Q 010871 262 KGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 262 ~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
.++.++++.+|. .+..+.|+|-+ .+.+.|+.|+.+.+||++...+...+ .|...+..+.|+|+|++++.|++|..++
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred hhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 999999999985 78899999965 67799999999999999988888888 4778899999999999999999999999
Q ss_pred EEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 340 SISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
+||+.... +.. .+..|.+.+..+.|+ |..-.+++|+.|+++++||++
T Consensus 180 i~d~~agk--~~~-----ef~~~e~~v~sle~h-----p~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 180 IWDLTAGK--LSK-----EFKSHEGKVQSLEFH-----PLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eecccccc--ccc-----ccccccccccccccC-----chhhhhccCCCCceeeeeccc
Confidence 99885332 211 124566666666554 444444455555555555443
No 143
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=4.4e-21 Score=182.16 Aligned_cols=303 Identities=17% Similarity=0.178 Sum_probs=209.7
Q ss_pred eeeeecccccEEEEEEecCCCC---EEEEEeCCCcEEEEEcCC-CCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSD---LLAYGASDGTLTVCTVSD-PPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTV 255 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~---~lasg~~dg~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v 255 (498)
...+.||.++|+|+.|-| +.+ ++++|+.||.|++|.+.. ....+..+++|...+.|+. .......+.+.|+++
T Consensus 47 ~t~l~GH~a~VnC~~~l~-~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~--a~~~~~~~~~ad~~v 123 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLP-TSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVV--ARSSVMTCKAADGTV 123 (764)
T ss_pred EEeccCCccceEEEEEcc-cccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEE--eeeeEEEeeccCceE
Confidence 456899999999999998 666 899999999999999984 2345666777776666554 222233333789999
Q ss_pred EEEECCCCc--EEEEEecC-C--CeEEEEEEcC-CCcEEEEEeCCCcEEEEEcCCCc--EEEEe-ecCCCeEEEEEcCCC
Q 010871 256 RVWELTKGD--CIRVIYGV-S--SQLCIRFHPV-NNNFLSVGNANKEITVFNFSTGR--IIKKL-VVDSEVTSMDHDHTG 326 (498)
Q Consensus 256 ~iwd~~~~~--~~~~~~~~-~--~v~~i~~~~~-~~~~l~~g~~dg~i~iwd~~~~~--~~~~~-~~~~~i~~l~~~~~~ 326 (498)
.+||.+..+ +...+... . -..|+++.++ +..+++.|+.+..|.++.-...+ .+..+ +|...|.+++|...+
T Consensus 124 ~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~ 203 (764)
T KOG1063|consen 124 SVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLG 203 (764)
T ss_pred EEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccC
Confidence 999995554 23333322 1 2347777773 34456667777788888765443 33444 589999999998765
Q ss_pred C---EEEEEcCCCeEEEEEccCCcccc-----------------cc-------cccccccCCCccceeeEEEeEeeEcCC
Q 010871 327 Q---LLFCGDAQGCIYSISMESHSGAL-----------------SR-------SHRHRTTGKRKCPVTTVQYRSFSLLAG 379 (498)
Q Consensus 327 ~---~l~~~~~dg~i~i~d~~~~~~~~-----------------~~-------~~~~~~~~~~~~~i~~~~~~~~~~s~~ 379 (498)
. +|++++.|..|++|.+......- .. ..-.....+|..-|.++.|+ |.
T Consensus 204 ~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~-----p~ 278 (764)
T KOG1063|consen 204 GDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH-----PE 278 (764)
T ss_pred CCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc-----cc
Confidence 4 78899999999999875433100 00 00012245899999999998 89
Q ss_pred CcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC-CCccce
Q 010871 380 GPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK-PKHSCV 458 (498)
Q Consensus 380 ~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~-~~~~~~ 458 (498)
+..|++++.|.++.+|.-..... ............ .-...|-...++++++.|++-+.-|..++|.... ......
T Consensus 279 ~~~LLSASaDksmiiW~pd~~tG---iWv~~vRlGe~g-g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~ 354 (764)
T KOG1063|consen 279 GLDLLSASADKSMIIWKPDENTG---IWVDVVRLGEVG-GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQE 354 (764)
T ss_pred hhhheecccCcceEEEecCCccc---eEEEEEEeeccc-ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeec
Confidence 99999999999999998764321 111111111111 1111233344445999999999999999999333 223344
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 459 NKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 459 ~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
..+.||...|++++|+|.|.+|++.|.|-+-|++-.
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeecc
Confidence 556799999999999999999999999999998753
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.4e-20 Score=177.01 Aligned_cols=250 Identities=17% Similarity=0.225 Sum_probs=194.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-EEEEEecC--CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc
Q 010871 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD-CIRVIYGV--SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR 306 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~--~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 306 (498)
-..+|.+|+|+.+.+.||.+-.||.|-+|++..+- +...+.++ ..+-.++|.+ + ..|++.+.+|.|.-||+.+++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~-~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-G-GRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-C-CeEEeecCCceEEEEecccCc
Confidence 35689999999999999999999999999999764 33445554 4688999995 4 456667799999999999999
Q ss_pred EEEEee-cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEE
Q 010871 307 IIKKLV-VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT 385 (498)
Q Consensus 307 ~~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t 385 (498)
....+. ..+.|++++.+|.+..+++|+.||.++.++.....-..... +...++.+.++.|. +++..+++
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~-----l~rq~sRvLslsw~-----~~~~~i~~ 171 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS-----LMRQKSRVLSLSWN-----PTGTKIAG 171 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-----cccccceEEEEEec-----CCccEEEe
Confidence 998885 67889999999999999999999977777665433222222 34556788888887 99999999
Q ss_pred EEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCC
Q 010871 386 CTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHR 465 (498)
Q Consensus 386 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~ 465 (498)
|+.||.|++||+..+................-. .+.|+-+.. ....|++|..-|+|.+||...+. ++..+..|.
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~--~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gT--LiqS~~~h~ 245 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREP--TIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGT--LIQSHSCHD 245 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCc--eEEEEEEEe--ecCcEEEecCCceEEEEcccCcc--hhhhhhhhh
Confidence 999999999999876443311111111111111 224443333 45679999999999999999954 688889999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 466 FPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 466 ~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
..|.+++..+++.+++++|.|+.|..+...+.
T Consensus 246 adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 246 ADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred cceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 99999999999999999999999999887654
No 145
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=1.9e-21 Score=184.74 Aligned_cols=240 Identities=19% Similarity=0.267 Sum_probs=190.1
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEE--EEecCCC-eEE-EEEEcCCCcEEEEEeCCCc
Q 010871 221 PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIR--VIYGVSS-QLC-IRFHPVNNNFLSVGNANKE 296 (498)
Q Consensus 221 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~~~~~-v~~-i~~~~~~~~~l~~g~~dg~ 296 (498)
.++.+.+.+|...|..+++.+.. .++++|.||++++|+-..++.+. .+.++.. +.+ ++|.+.++-.+++|+.|.+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 45678899999999999987554 89999999999999987665543 3444443 333 7777655567899999999
Q ss_pred EEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEee
Q 010871 297 ITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFS 375 (498)
Q Consensus 297 i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 375 (498)
|.+|...+..++..+ +|+..|.+++...++. +++|+.|.++++|-....... ..+|...|..+...
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~---------l~gH~asVWAv~~l--- 149 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS---------LQGHTASVWAVASL--- 149 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc---------cCCcchheeeeeec---
Confidence 999999999999988 6999999999888877 999999999999966432211 48899999988775
Q ss_pred EcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEE-EEeeeeeccCCCEEEEEeCCCcEEEEECCCCC
Q 010871 376 LLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRA-SFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 376 ~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~ 454 (498)
|++ .++||+.|.+|++|.-... ...+.++...++. ++- ++..|++++.||.|++|++.
T Consensus 150 --~e~-~~vTgsaDKtIklWk~~~~---------l~tf~gHtD~VRgL~vl------~~~~flScsNDg~Ir~w~~~--- 208 (745)
T KOG0301|consen 150 --PEN-TYVTGSADKTIKLWKGGTL---------LKTFSGHTDCVRGLAVL------DDSHFLSCSNDGSIRLWDLD--- 208 (745)
T ss_pred --CCC-cEEeccCcceeeeccCCch---------hhhhccchhheeeeEEe------cCCCeEeecCCceEEEEecc---
Confidence 555 8999999999999986421 1122333333332 222 56678999999999999995
Q ss_pred ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 455 HSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 455 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
..++.++.+|+.-|.++...+++..++++|.|++++||+..
T Consensus 209 ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 209 GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 44689999999999999988888999999999999999864
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=2e-21 Score=182.89 Aligned_cols=274 Identities=18% Similarity=0.182 Sum_probs=189.0
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEE--eecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEE
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKL--LNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWE 259 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd 259 (498)
+..|.++|..+.|-| ....|++++.|.++++||+.+ .++... +.||.+.|.+++|.+.+ ..|++|+.||.|.|||
T Consensus 96 ~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~-s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT-SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccceeEeeccCC-CceeEEEccCCceeeeeeecc-ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 467999999999999 888999999999999999998 666655 88999999999999966 5788999999999999
Q ss_pred CCCCcE---------------------------EEEEecC-CCeEE---EEEEcCCCcEEEEEeC-CCcEEEEEcCCCcE
Q 010871 260 LTKGDC---------------------------IRVIYGV-SSQLC---IRFHPVNNNFLSVGNA-NKEITVFNFSTGRI 307 (498)
Q Consensus 260 ~~~~~~---------------------------~~~~~~~-~~v~~---i~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~ 307 (498)
+.-... +..-..+ ..+.+ +.+..| +..|++++. |+.|+|||+++...
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeeccccc
Confidence 863220 0000111 11222 445553 456666665 99999999998765
Q ss_pred EEEee---------c---CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEee
Q 010871 308 IKKLV---------V---DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFS 375 (498)
Q Consensus 308 ~~~~~---------~---~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 375 (498)
....+ + ...+.++..+..|.+|++.+.|+.|++|++.......... +.+....-.+..-.
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~--------~sg~~~~sf~vks~ 324 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE--------FSGKLNSSFYVKSE 324 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh--------ccCcccceeeeeee
Confidence 44332 2 2457888888899999998899999999997655433322 12222222233345
Q ss_pred EcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC-
Q 010871 376 LLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK- 454 (498)
Q Consensus 376 ~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~- 454 (498)
.+|++.++++|+.|....+|.+........ ......+......|.|. .-.-+++++.|..++||++..+-
T Consensus 325 lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~-----~l~Ght~eVt~V~w~pS----~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQAYIWVVSSPEAPPA-----LLLGHTREVTTVRWLPS----ATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred cCCCCceEeccCCCcceeeeeecCccCChh-----hhhCcceEEEEEeeccc----cCCCceeeccCcceEEEeccCchh
Confidence 569999999999999999999985432211 11223333444466662 23346677999999999996541
Q ss_pred -----------ccceeeecCCCCCeEEEEEcCC
Q 010871 455 -----------HSCVNKLQGHRFPVVAVAWNHG 476 (498)
Q Consensus 455 -----------~~~~~~~~~h~~~V~~l~~sp~ 476 (498)
......+++|.-.+..+.++-.
T Consensus 396 e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~ 428 (720)
T KOG0321|consen 396 EIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLR 428 (720)
T ss_pred hccccccchhhhhhhhhhhcccccccccccccc
Confidence 1123345667666666665543
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.5e-21 Score=178.14 Aligned_cols=247 Identities=20% Similarity=0.303 Sum_probs=189.4
Q ss_pred ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEE
Q 010871 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFN 301 (498)
Q Consensus 222 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd 301 (498)
.+...+.||++.|.||...|.|.+|++|+.||+|+||.+.+|.|++++...+.|.|++|+|.....+++......+.|.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 34566889999999999999999999999999999999999999999999999999999998766655555555555554
Q ss_pred cCCC--------------------------------------cEEEEeecCCCeEEEEEcCCCCEEEEEcCCC---eEEE
Q 010871 302 FSTG--------------------------------------RIIKKLVVDSEVTSMDHDHTGQLLFCGDAQG---CIYS 340 (498)
Q Consensus 302 ~~~~--------------------------------------~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg---~i~i 340 (498)
..-| .....+.|...|..+.|+..|++|++...++ .|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 3211 0112345778899999999999999876643 6888
Q ss_pred EEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeee
Q 010871 341 ISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSI 420 (498)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
+++........ +....+.|.++.|+ |...+|++++.. .|++||+..... ..++.....
T Consensus 551 HQLSK~~sQ~P-------F~kskG~vq~v~FH-----Ps~p~lfVaTq~-~vRiYdL~kqel-------vKkL~tg~k-- 608 (733)
T KOG0650|consen 551 HQLSKRKSQSP-------FRKSKGLVQRVKFH-----PSKPYLFVATQR-SVRIYDLSKQEL-------VKKLLTGSK-- 608 (733)
T ss_pred EecccccccCc-------hhhcCCceeEEEec-----CCCceEEEEecc-ceEEEehhHHHH-------HHHHhcCCe--
Confidence 88764433221 24556778888888 888888888764 899999874311 111111111
Q ss_pred EEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 421 RASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
..+.+.+.+.|..|+.|+.|+.+..||+.-.. .+.+.+.-|...|++|+||+.-.++++|+.||++.|+-
T Consensus 609 --wiS~msihp~GDnli~gs~d~k~~WfDldlss-kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 609 --WISSMSIHPNGDNLILGSYDKKMCWFDLDLSS-KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred --eeeeeeecCCCCeEEEecCCCeeEEEEcccCc-chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 22333444599999999999999999998653 46788899999999999999999999999999999874
No 148
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=2.9e-21 Score=165.64 Aligned_cols=217 Identities=18% Similarity=0.261 Sum_probs=172.9
Q ss_pred ecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCc------------EEEEE---ecC-CCeEEEEEEcCCCcEEEE
Q 010871 228 NGHSKDVTDFDFSS-NNQYIASSSMDKTVRVWELTKGD------------CIRVI---YGV-SSQLCIRFHPVNNNFLSV 290 (498)
Q Consensus 228 ~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~------------~~~~~---~~~-~~v~~i~~~~~~~~~l~~ 290 (498)
..|.+.|.++...+ .|+++++|+.||.|.+||++... |+... .+| -.|..+.|.|.+..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35889999999987 57999999999999999998542 11011 122 257789999999999999
Q ss_pred EeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCC---CEEEEEcCCCeEEEEEccCCcccccccccccccCCCcccee
Q 010871 291 GNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTG---QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVT 367 (498)
Q Consensus 291 g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 367 (498)
++.|.+++|||..+.+....|..+..|.+-+++|-. .++++|..+-.|++.|+....... .+.+|...|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH-------~LsGHr~~vl 192 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH-------TLSGHRDGVL 192 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee-------eeccccCceE
Confidence 999999999999999999999999999999998854 478899999999999997654332 2478999999
Q ss_pred eEEEeEeeEcCCCc-EEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEE
Q 010871 368 TVQYRSFSLLAGGP-VLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVY 446 (498)
Q Consensus 368 ~~~~~~~~~s~~~~-~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~ 446 (498)
++.|+ |... .|++|+.||.|++||++.. . |..+
T Consensus 193 aV~Ws-----p~~e~vLatgsaDg~irlWDiRra-------------------------------s----------gcf~ 226 (397)
T KOG4283|consen 193 AVEWS-----PSSEWVLATGSADGAIRLWDIRRA-------------------------------S----------GCFR 226 (397)
T ss_pred EEEec-----cCceeEEEecCCCceEEEEEeecc-------------------------------c----------ceeE
Confidence 99998 5554 5788999999999999721 1 2233
Q ss_pred EEECCCCCccc-eeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 447 FYDLAKPKHSC-VNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 447 iwd~~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
+.|..+++..+ +..-.+|.+.|.+++|..++.+|++++.|..+++|+.+.|
T Consensus 227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred EeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 44444433322 3335689999999999999999999999999999998876
No 149
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.5e-21 Score=166.14 Aligned_cols=280 Identities=14% Similarity=0.233 Sum_probs=196.5
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEECCCCcEEEEEe--cCC--C
Q 010871 201 DLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSS--NNQYIASSSMDKTVRVWELTKGDCIRVIY--GVS--S 274 (498)
Q Consensus 201 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~--~ 274 (498)
..+|++..+|.|++||..+ +..+..+++|...+..+.|.. ....+.+|+.||+|++||++.......+. .+. +
T Consensus 41 ~~vav~lSngsv~lyd~~t-g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccc-hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 5788999999999999998 889999999999999999987 35688999999999999999876555443 333 3
Q ss_pred eEEEEEEcCCCcEEEEEe----CCCcEEEEEcCCCcE-EEEe--ecCCCeEEEEEcCCC-CEEEEEcCCCeEEEEEccCC
Q 010871 275 QLCIRFHPVNNNFLSVGN----ANKEITVFNFSTGRI-IKKL--VVDSEVTSMDHDHTG-QLLFCGDAQGCIYSISMESH 346 (498)
Q Consensus 275 v~~i~~~~~~~~~l~~g~----~dg~i~iwd~~~~~~-~~~~--~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~ 346 (498)
..|++... ..+++++|. .+-.|.+||++..+. +..+ .|...|++++|+|.. ++|++|+.||.|.+||+...
T Consensus 120 f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 120 FICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 44555543 456777774 467899999998877 6666 589999999999976 58999999999999998755
Q ss_pred cccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccC------Cceeee
Q 010871 347 SGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLA------PRVHSI 420 (498)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~~ 420 (498)
...-.. .....+...|.++.|.. +.-+.|.+-+..+...+|++..+.............. .....+
T Consensus 199 ~EeDaL----~~viN~~sSI~~igw~~----~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I 270 (376)
T KOG1188|consen 199 NEEDAL----LHVINHGSSIHLIGWLS----KKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI 270 (376)
T ss_pred cchhhH----HHhhcccceeeeeeeec----CCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence 221111 11245566677787762 3335688899999999999986542211111100000 001111
Q ss_pred EEEEeeeeeccCCCEEEEEeC-CCcEEEEECC---CCC-ccceeeecC-CCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 421 RASFCPLLSLEKGEYIVAGSE-DSNVYFYDLA---KPK-HSCVNKLQG-HRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~gs~-dg~I~iwd~~---~~~-~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
. ..+| .++..++.++. -+...++-+. ++. ...+..+++ |...|+++.|...+.+|.|||.||.+.+|..
T Consensus 271 ~-~~~~----~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 271 N-EHSP----GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred e-cccC----CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 1 2222 35555555555 4555555443 211 234556666 7778999999988999999999999999985
Q ss_pred C
Q 010871 495 A 495 (498)
Q Consensus 495 ~ 495 (498)
+
T Consensus 346 ~ 346 (376)
T KOG1188|consen 346 E 346 (376)
T ss_pred C
Confidence 4
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.2e-20 Score=172.56 Aligned_cols=262 Identities=15% Similarity=0.256 Sum_probs=199.3
Q ss_pred cEEEEEEecCCC-CEEEEEeCCCcEEEEEcCCC-C--ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 010871 189 AVTILKFGHMSS-DLLAYGASDGTLTVCTVSDP-P--KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD 264 (498)
Q Consensus 189 ~V~~v~~sp~~~-~~lasg~~dg~i~iwd~~~~-~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 264 (498)
.|.++.|+. .. -.+|+.+.|..|++|.-... + ..+..+.+. .-.|++......++++|+..+.|+|||+....
T Consensus 36 g~~s~~w~~-~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQR-RNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred cceeeeccc-cceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence 489999987 33 23334456888999976542 1 122333333 44566665566899999999999999999888
Q ss_pred EEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecC--CCeEEEEEcCCCC-EEEEEcCCCeEEE
Q 010871 265 CIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD--SEVTSMDHDHTGQ-LLFCGDAQGCIYS 340 (498)
Q Consensus 265 ~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~i~~l~~~~~~~-~l~~~~~dg~i~i 340 (498)
+.+.++.|. .|.++.|.. ...+|++++..|.|.|..+.++.....+.+. ..|.-+.|++..+ +|.+++.+|.|.+
T Consensus 113 ~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl 191 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL 191 (673)
T ss_pred HhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence 888888885 678899887 4579999999999999999999988888754 4577899999877 5668899999999
Q ss_pred EEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeee
Q 010871 341 ISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSI 420 (498)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
||+......... ...|..|...++|++ .+..+|++.+.|..|.+||...... .......
T Consensus 192 wDv~g~sp~~~~------~~~HsAP~~gicfsp----sne~l~vsVG~Dkki~~yD~~s~~s-----~~~l~y~------ 250 (673)
T KOG4378|consen 192 WDVQGMSPIFHA------SEAHSAPCRGICFSP----SNEALLVSVGYDKKINIYDIRSQAS-----TDRLTYS------ 250 (673)
T ss_pred EeccCCCcccch------hhhccCCcCcceecC----CccceEEEecccceEEEeecccccc-----cceeeec------
Confidence 999866544332 367888888888874 3567889999999999999974311 0111111
Q ss_pred EEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCC
Q 010871 421 RASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE 477 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 477 (498)
.-++.+++.++|.+|++|...|.|+.||++..+ .++..+.+|...|++|+|-|..
T Consensus 251 -~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 251 -HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred -CCcceeeecCCceEEEeecCCceEEEEecccCC-CCceEeeecccceeEEEeeecc
Confidence 134455555699999999999999999999754 5789999999999999998754
No 151
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1e-20 Score=163.96 Aligned_cols=218 Identities=17% Similarity=0.293 Sum_probs=153.0
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-----cEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEE
Q 010871 225 KLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG-----DCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITV 299 (498)
Q Consensus 225 ~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~i 299 (498)
..|++|.+.|++++|+.||++|+|++.|++|++|++... ++++.--..+..+.++|.|+-..+++......++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 458899999999999999999999999999999998853 233322233456789999988888888777777888
Q ss_pred EEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCC
Q 010871 300 FNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG 379 (498)
Q Consensus 300 wd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~ 379 (498)
|-+...+- .......+.+ |-- .....|..++..+-+. .+
T Consensus 160 yk~~K~~d-----G~~~~~~v~~-------------------D~~------------~f~~kh~v~~i~iGiA-----~~ 198 (420)
T KOG2096|consen 160 YKLVKKTD-----GSGSHHFVHI-------------------DNL------------EFERKHQVDIINIGIA-----GN 198 (420)
T ss_pred EEeeeccc-----CCCCcccccc-------------------ccc------------ccchhcccceEEEeec-----CC
Confidence 86532211 1111111111 100 0013344444444433 67
Q ss_pred CcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC---CC--
Q 010871 380 GPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK---PK-- 454 (498)
Q Consensus 380 ~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~---~~-- 454 (498)
+.+|++++.|..|.+|++.....+.. -........++.+| +|++|++++.--.|++|.+-- +.
T Consensus 199 ~k~imsas~dt~i~lw~lkGq~L~~i-------dtnq~~n~~aavSP-----~GRFia~~gFTpDVkVwE~~f~kdG~fq 266 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLKGQLLQSI-------DTNQSSNYDAAVSP-----DGRFIAVSGFTPDVKVWEPIFTKDGTFQ 266 (420)
T ss_pred ceEEEEecCCCcEEEEecCCceeeee-------ccccccccceeeCC-----CCcEEEEecCCCCceEEEEEeccCcchh
Confidence 88999999999999999983211111 11122233345555 999999999999999999742 21
Q ss_pred -ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 455 -HSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 455 -~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
-..+..++||...|..++|+++...++|.+.||+++|||++
T Consensus 267 ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 267 EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 12356789999999999999999999999999999999975
No 152
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=2.1e-20 Score=158.07 Aligned_cols=292 Identities=16% Similarity=0.206 Sum_probs=193.7
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN-GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 261 (498)
|.+|.+.|+|+.|-. ..+|.+|..-|.|++|++.+ ......+. .|...|+.+.-.|+ ..|.+-+.|+.+.+|++.
T Consensus 10 LRp~~~~v~s~~fqa--~~rL~sg~~~G~V~~w~lqt-~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQA--NERLMSGLSVGIVKMWVLQT-ERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred eccccchheehhhcc--chhhhcccccceEEEEEeec-CccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 457899999999975 45699999999999999998 66666666 57888999999887 478899999999999998
Q ss_pred CCcEEEEEecCCCeEEEEEEc-----CCC---cEEEEEeCCC-cEEEEEcCCCcEEEEee-----cCCCeEEEEEcCC-C
Q 010871 262 KGDCIRVIYGVSSQLCIRFHP-----VNN---NFLSVGNANK-EITVFNFSTGRIIKKLV-----VDSEVTSMDHDHT-G 326 (498)
Q Consensus 262 ~~~~~~~~~~~~~v~~i~~~~-----~~~---~~l~~g~~dg-~i~iwd~~~~~~~~~~~-----~~~~i~~l~~~~~-~ 326 (498)
-+..+..-. -.+.++-|.+ ... .+++.-+... .+.+-|......+.... ..+.+.+..+..+ +
T Consensus 86 ~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 86 YSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred CcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 765443221 0112222322 111 1111111100 12222222222222221 2355666665432 2
Q ss_pred C--EEEEEcCCCeEEEEEccCCcccccccc---cccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccc
Q 010871 327 Q--LLFCGDAQGCIYSISMESHSGALSRSH---RHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEI 401 (498)
Q Consensus 327 ~--~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~ 401 (498)
. ++++|.++|.+.+||+......+.... .......|..+|.++.+. +.-..=++|+.+..+..|++....
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya-----s~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA-----SSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec-----hhhcCCcCCCccccceeeeecccc
Confidence 2 677899999999999987533222111 111135688899999886 334445677788889999887542
Q ss_pred cceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEE
Q 010871 402 QGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLA 481 (498)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~ 481 (498)
.............+.+..+ .+. +|++.+|+++.|+.|+||..++ ..++..++-|.+.|++++|+|+..++|
T Consensus 239 gslq~~~e~~lknpGv~gv--rIR-----pD~KIlATAGWD~RiRVyswrt--l~pLAVLkyHsagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGV--RIR-----PDGKILATAGWDHRIRVYSWRT--LNPLAVLKYHSAGVNAVAFSPDCELMA 309 (323)
T ss_pred CcccccceEEecCCCccce--EEc-----cCCcEEeecccCCcEEEEEecc--CCchhhhhhhhcceeEEEeCCCCchhh
Confidence 2111111111112223333 233 4999999999999999999999 557899999999999999999999999
Q ss_pred EEeCCCeEEEeec
Q 010871 482 SSDLYGIVIVWKR 494 (498)
Q Consensus 482 s~~~Dg~i~iW~~ 494 (498)
.++.|++|.+|++
T Consensus 310 aaskD~rISLWkL 322 (323)
T KOG0322|consen 310 AASKDARISLWKL 322 (323)
T ss_pred hccCCceEEeeec
Confidence 9999999999986
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=1.4e-19 Score=170.34 Aligned_cols=149 Identities=18% Similarity=0.237 Sum_probs=105.6
Q ss_pred cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeec
Q 010871 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLK 412 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 412 (498)
+..|.|-||+++........... .......|+.+.|.+ -|...|++++.||.|++|.+..+............
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p---~l~Ngt~vtDl~WdP----FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~ 672 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMP---GLFNGTLVTDLHWDP----FDDERLAVATDDGQINLWRLTANGLPENEMTPEKI 672 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccccc---ccccCceeeecccCC----CChHHeeecccCceEEEEEeccCCCCcccCCccee
Confidence 45677778877643322111111 122345677777775 35788999999999999999865432222221111
Q ss_pred ---cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 010871 413 ---LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIV 489 (498)
Q Consensus 413 ---~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i 489 (498)
+...+.. ..|+|++ ...|++++.|.+|++||+.+.+ ....+.+|.+.|.+++|+|+|+.+|+.+.||+|
T Consensus 673 lt~h~eKI~s--lRfHPLA----advLa~asyd~Ti~lWDl~~~~--~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 673 LTIHGEKITS--LRFHPLA----ADVLAVASYDSTIELWDLANAK--LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred eecccceEEE--EEecchh----hhHhhhhhccceeeeeehhhhh--hhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 2222333 3677763 5789999999999999999954 577899999999999999999999999999999
Q ss_pred EEeecCC
Q 010871 490 IVWKRAK 496 (498)
Q Consensus 490 ~iW~~~~ 496 (498)
+||+-..
T Consensus 745 rVy~Prs 751 (1012)
T KOG1445|consen 745 RVYEPRS 751 (1012)
T ss_pred EEeCCCC
Confidence 9998654
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.1e-20 Score=169.08 Aligned_cols=207 Identities=16% Similarity=0.190 Sum_probs=168.2
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECC
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSN-NQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~ 261 (498)
-.+|+++|..++|+......||+||.|.+|++||+.+ +++..++..|.+.|.++.|+|. ..+|++||.|++|.+.|.+
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 3589999999999987778999999999999999999 8999999999999999999985 5799999999999999998
Q ss_pred C-CcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-cEEEEe-ecCCCeEEEEEcCCCC-EEEEEcCCCe
Q 010871 262 K-GDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-RIIKKL-VVDSEVTSMDHDHTGQ-LLFCGDAQGC 337 (498)
Q Consensus 262 ~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~-~~~~~i~~l~~~~~~~-~l~~~~~dg~ 337 (498)
. ...-..++..+.+-.++|.|.....++++..||+|+-+|++.. +++.++ .|...|.+++++..-. ++++++.++.
T Consensus 318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 3 3333455566788899999999999999999999999999875 888888 4999999999987654 7889999999
Q ss_pred EEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCc-EEEEEEcCCcEEEEEcccc
Q 010871 338 IYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGP-VLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~-~l~t~s~dg~i~iwd~~~~ 400 (498)
|++|++..........+... +.. .+++++.|+-. +++.|+..+.+++||+.+.
T Consensus 398 Vklw~~~~~~~~~v~~~~~~--------~~r--l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEHSFK--------LGR--LHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred EEEEeecCCCCccccccccc--------ccc--eeecccCCCcceEEEecCccceEEEeecccC
Confidence 99999987665544332211 111 22333335544 5667777888999998753
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=1.9e-19 Score=156.51 Aligned_cols=274 Identities=17% Similarity=0.181 Sum_probs=200.0
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC-----------ceeEEee-cCCCCeEEEEEc-------cCCCEEEEEe
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPP-----------KVIKLLN-GHSKDVTDFDFS-------SNNQYIASSS 250 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~-----------~~~~~~~-~h~~~V~~l~~s-------~~~~~l~s~s 250 (498)
...+.|+| +|..|++-+.|..+.+|++.... .....++ .....|...+|- |+..++++.+
T Consensus 52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34678999 99999999999999999986311 0111111 234568888886 4667899999
Q ss_pred CCCcEEEEECCCCcEEEEEecC------CCeEEEEEEcCCCcEEEEEeCCCcEEEEEc-CCCcEEEEe--------ecCC
Q 010871 251 MDKTVRVWELTKGDCIRVIYGV------SSQLCIRFHPVNNNFLSVGNANKEITVFNF-STGRIIKKL--------VVDS 315 (498)
Q Consensus 251 ~dg~v~iwd~~~~~~~~~~~~~------~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~-~~~~~~~~~--------~~~~ 315 (498)
.+.-|++||.-+|+....+... ....+++|+|++ ..|++| ....|+++|+ +.|+....+ ...+
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 9999999999999877766542 345699999976 455555 7889999999 555432222 2356
Q ss_pred CeEEEEEcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-CCcEE
Q 010871 316 EVTSMDHDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-DGNLS 393 (498)
Q Consensus 316 ~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-dg~i~ 393 (498)
-|.+++|+|... .+++|+....+-+|.......... ..+|.+.|+.++|. ++|+.|++|+. |..|.
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l-------lggh~gGvThL~~~-----edGn~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL-------LGGHGGGVTHLQWC-----EDGNKLFSGARKDDKIL 276 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceee-------ecccCCCeeeEEec-----cCcCeecccccCCCeEE
Confidence 789999999765 889999888888886654433222 36899999999998 99999999885 77899
Q ss_pred EEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEE
Q 010871 394 FFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAW 473 (498)
Q Consensus 394 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~ 473 (498)
.||++........+.. .....-..+-+...| ++++|++|+.||.|++||++... ..+..+..|...|+.+++
T Consensus 277 ~WDiR~~~~pv~~L~r--hv~~TNQRI~FDld~-----~~~~LasG~tdG~V~vwdlk~~g-n~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALER--HVGDTNQRILFDLDP-----KGEILASGDTDGSVRVWDLKDLG-NEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred EEeehhccchhhhhhh--hccCccceEEEecCC-----CCceeeccCCCccEEEEecCCCC-Ccccccccccccccceec
Confidence 9999864332221111 111112223334444 89999999999999999999842 246677789999999999
Q ss_pred cCCCCEEEEEeCC
Q 010871 474 NHGENLLASSDLY 486 (498)
Q Consensus 474 sp~~~~l~s~~~D 486 (498)
+|--.++++++..
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9998888888753
No 156
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.5e-21 Score=186.23 Aligned_cols=193 Identities=21% Similarity=0.436 Sum_probs=170.2
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK 262 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 262 (498)
|.+|..+|-||.|++ ...+|++|+.+|+|++||+.. ...+++|.||...+..+.|+|-+.+.++|+.|+.+++||...
T Consensus 66 ~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDlee-Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk 143 (825)
T KOG0267|consen 66 LTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEE-AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK 143 (825)
T ss_pred eeccCCcceeeecCc-chhhhcccccCCceeeeehhh-hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc
Confidence 789999999999999 889999999999999999998 888999999999999999999999999999999999999998
Q ss_pred CcEEEEEecCCC-eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q 010871 263 GDCIRVIYGVSS-QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDAQGCIYS 340 (498)
Q Consensus 263 ~~~~~~~~~~~~-v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i 340 (498)
..|.+.+.+|.. +.++.|.| ++.+++.|+.|.+++|||...|+....|. |...+..+.|+|..-+++.|+.|+.+++
T Consensus 144 ~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 144 KGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred cCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeee
Confidence 899999998864 55889999 56899999999999999999999999996 9999999999999999999999999999
Q ss_pred EEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC
Q 010871 341 ISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG 390 (498)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg 390 (498)
||+++...... .......|.+..|. +++..+++|..+.
T Consensus 223 ~dletfe~I~s-------~~~~~~~v~~~~fn-----~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 223 WDLETFEVISS-------GKPETDGVRSLAFN-----PDGKIVLSGEQIS 260 (825)
T ss_pred eccceeEEeec-------cCCccCCceeeeec-----CCceeeecCchhh
Confidence 99974332111 13335667777776 8999888887653
No 157
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3e-20 Score=169.84 Aligned_cols=304 Identities=17% Similarity=0.216 Sum_probs=223.8
Q ss_pred cceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccC--CCEEEEEeCCCcE
Q 010871 178 GMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSN--NQYIASSSMDKTV 255 (498)
Q Consensus 178 ~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~s~dg~v 255 (498)
.+...|.+|.+.|+.|.|+. .|..|++|+.|..|.+||.........-..||...|..-.|.|. .+-|++++.||.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 35567899999999999999 99999999999999999999844445555689999999999884 4689999999999
Q ss_pred EEEECCC-CcEE---EEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee----cCC---CeEEEEEcC
Q 010871 256 RVWELTK-GDCI---RVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV----VDS---EVTSMDHDH 324 (498)
Q Consensus 256 ~iwd~~~-~~~~---~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----~~~---~i~~l~~~~ 324 (498)
++=.+.. +.+. +.-++++.+..++.-|....-|.+++.|+.+.-+|++.+.....+. ... ....++.+|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 9987653 3332 2233456888999999999999999999999999999876554442 222 567888998
Q ss_pred CCC-EEEEEcCCCeEEEEEccCCccccc-----ccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 325 TGQ-LLFCGDAQGCIYSISMESHSGALS-----RSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 325 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
... .+++|+.|..+++||.+....... ...+..........|+++.|+ .++.-|+++..|-.|++|.-.
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-----h~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-----HDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec-----CCccceeeeecccceEEeccc
Confidence 776 889999999999999875433311 111111112334456777665 788888888899999999544
Q ss_pred ccccce--------eeEeE-eeccCCceeeeEEE-EeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCe
Q 010871 399 LEIQGY--------LTFRC-SLKLAPRVHSIRAS-FCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPV 468 (498)
Q Consensus 399 ~~~~~~--------~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V 468 (498)
.+.... ....+ ...+....+.-.+. |. |...|+++|+.-|.|.||+-.+++ .+..+.+....|
T Consensus 367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG-----PrsEyVvSGSDCGhIFiW~K~t~e--ii~~MegDr~VV 439 (559)
T KOG1334|consen 367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG-----PRSEYVVSGSDCGHIFIWDKKTGE--IIRFMEGDRHVV 439 (559)
T ss_pred cccCCCCCCCcchhhccchhhcccccccccceeeecc-----CccceEEecCccceEEEEecchhH--HHHHhhcccceE
Confidence 321100 00011 11111111111122 33 488999999999999999999954 677788877799
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 469 VAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 469 ~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
+||.=+|--..||++|-|..|+||.-
T Consensus 440 NCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 440 NCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred eccCCCCCCchhhccCCccceeeecC
Confidence 99999999999999999999999976
No 158
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6.8e-19 Score=152.60 Aligned_cols=246 Identities=12% Similarity=0.184 Sum_probs=169.9
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee
Q 010871 234 VTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV 312 (498)
Q Consensus 234 V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 312 (498)
..|+.|++.|.+|++|+.||.|.|||+.+...-+.+..| .++.+++|+++ ++.|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCC-CCEeeeecCCceeEEEeccCCCceeEEE
Confidence 689999999999999999999999999999888888888 48889999995 5889999999999999999999999999
Q ss_pred cCCCeEEEEEcCCCCEEEEE-cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCc
Q 010871 313 VDSEVTSMDHDHTGQLLFCG-DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGN 391 (498)
Q Consensus 313 ~~~~i~~l~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~ 391 (498)
..++|+.+.|+|..+..+++ --+..-.+.++............. ......-.+. .+.+.|+++++|...|.
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d---~dln~sas~~-----~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD---GDLNSSASHG-----VFDRRGKYIITGTSKGK 176 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc---cccccccccc-----cccCCCCEEEEecCcce
Confidence 99999999999976533332 222233444443322222111100 0000011111 23388999999999999
Q ss_pred EEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCC-------CccceeeecC-
Q 010871 392 LSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP-------KHSCVNKLQG- 463 (498)
Q Consensus 392 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~-------~~~~~~~~~~- 463 (498)
+.++|..+-.. ...+.......+..+ .+ +..|++|+.-+.|..|+.|++..- ..++..+++.
T Consensus 177 llv~~a~t~e~---vas~rits~~~IK~I--~~-----s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 177 LLVYDAETLEC---VASFRITSVQAIKQI--IV-----SRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EEEEecchhee---eeeeeechheeeeEE--EE-----eccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 99999875311 111111111223333 22 248999999999999999998731 1112222221
Q ss_pred -CCCCeEEEEEcCCCCEEEEEeC-CCeEEEeecCCCC
Q 010871 464 -HRFPVVAVAWNHGENLLASSDL-YGIVIVWKRAKTS 498 (498)
Q Consensus 464 -h~~~V~~l~~sp~~~~l~s~~~-Dg~i~iW~~~~~s 498 (498)
....=.+++|+.+|.+++.++. -..++||....|+
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS 283 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEecCCcc
Confidence 1223457889999999987764 4789999977664
No 159
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6.6e-19 Score=160.07 Aligned_cols=287 Identities=14% Similarity=0.187 Sum_probs=204.6
Q ss_pred CCCCCCCceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCC-EEEEEeCCCcEEEEEcCCCCc
Q 010871 144 SGNLASSHRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSD-LLAYGASDGTLTVCTVSDPPK 222 (498)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~lasg~~dg~i~iwd~~~~~~ 222 (498)
....|...++.+.+...+.+++-.......-.+..++ |. ..+|.+++|.| +|. .+++++.-..++.||+.+ .+
T Consensus 218 sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~--l~--~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~-ak 291 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH--LE--KFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLET-AK 291 (514)
T ss_pred EEEecCCCceEEEecCCCcEEEEEecCccChhheeee--ec--cCccceeeecC-CCceEEEecccceEEEEeeccc-cc
Confidence 4555666677777777777776544433333332222 22 56899999999 666 999999999999999987 33
Q ss_pred e--eEEeecCC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEE
Q 010871 223 V--IKLLNGHS-KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITV 299 (498)
Q Consensus 223 ~--~~~~~~h~-~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~i 299 (498)
. +..+.++. ..+.....++++++|+..+..|.|.+....+++.+.+++-.+.+..+.|+.++ ..|++.+.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds-k~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS-KELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCC-cEEEEEcCCceEEE
Confidence 2 33344544 45677888999999999999999999999999999999999999999999866 55555667899999
Q ss_pred EEcCCCcEEEEeecCCCe--EEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEc
Q 010871 300 FNFSTGRIIKKLVVDSEV--TSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLL 377 (498)
Q Consensus 300 wd~~~~~~~~~~~~~~~i--~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s 377 (498)
||++...+++.+...+.| +++|.++++.+||+|+..|.|.|||.+..-..... .+..........|++++|.
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P-kPik~~dNLtt~Itsl~Fn----- 444 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP-KPIKTVDNLTTAITSLQFN----- 444 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC-CchhhhhhhheeeeeeeeC-----
Confidence 999999999999766655 56777899999999999999999996543221111 1112223344556666666
Q ss_pred CCCcEEEEEEc--CCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 378 AGGPVLLTCTQ--DGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 378 ~~~~~l~t~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
++..+|+.+|. +..+++..+... .....++..-..+ ....++.++|.+.++|.|..+|.|.+|.+.
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~-------TVFsNfP~~n~~v-g~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSC-------TVFSNFPTSNTKV-GHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cchhhhhhhhhccccceEEEeccce-------eeeccCCCCCCcc-cceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999988875 567888877632 1111111111111 122233333499999999999999999875
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.2e-20 Score=186.23 Aligned_cols=246 Identities=17% Similarity=0.261 Sum_probs=190.5
Q ss_pred ccEEEEEEecCCCC----EEEEEeCCCcEEEEEcCCC-----CceeEEeecCCCCeEEEEEccCCC-EEEEEeCCCcEEE
Q 010871 188 AAVTILKFGHMSSD----LLAYGASDGTLTVCTVSDP-----PKVIKLLNGHSKDVTDFDFSSNNQ-YIASSSMDKTVRV 257 (498)
Q Consensus 188 ~~V~~v~~sp~~~~----~lasg~~dg~i~iwd~~~~-----~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~i 257 (498)
..-+.++|.+ .+. +||.|..||.|.+||...- ...+..+..|.+.|..+.|++... +|++|+.||.|.|
T Consensus 65 ~rF~kL~W~~-~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 65 NRFNKLAWGS-YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred ccceeeeecc-cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 3567899988 444 5999999999999998751 245667788999999999999665 9999999999999
Q ss_pred EECCCCcEEEEEe---cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecC---CCeEEEEEcCCCC-EEE
Q 010871 258 WELTKGDCIRVIY---GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD---SEVTSMDHDHTGQ-LLF 330 (498)
Q Consensus 258 wd~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~~i~~l~~~~~~~-~l~ 330 (498)
||+..-+.-.... ..+.|.+++|+..-.++|++++.+|.+.|||++..+.+..+... ..+..++|+|+.. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998755444332 33578899999988899999999999999999999888877432 3488999999874 455
Q ss_pred EEcCCC---eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeE
Q 010871 331 CGDAQG---CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTF 407 (498)
Q Consensus 331 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 407 (498)
+++.|. .|.+||++...... +.+..|...|.++.|.. .|..+|++++.|+.|.+|+.+++..
T Consensus 224 ~As~dd~~PviqlWDlR~assP~------k~~~~H~~GilslsWc~----~D~~lllSsgkD~~ii~wN~~tgEv----- 288 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPL------KILEGHQRGILSLSWCP----QDPRLLLSSGKDNRIICWNPNTGEV----- 288 (1049)
T ss_pred eecCCCCCceeEeecccccCCch------hhhcccccceeeeccCC----CCchhhhcccCCCCeeEecCCCceE-----
Confidence 555443 69999998655433 23478999999999983 4558999999999999999986421
Q ss_pred eEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC
Q 010871 408 RCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~ 454 (498)
..... ...-....+.|+| .+-..+++++-||.|.||.+....
T Consensus 289 l~~~p-~~~nW~fdv~w~p----r~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 289 LGELP-AQGNWCFDVQWCP----RNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecC-CCCcceeeeeecC----CCcchhhhheeccceeeeeeecCC
Confidence 11111 1233455668888 567799999999999999998754
No 161
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=4.5e-17 Score=155.60 Aligned_cols=280 Identities=9% Similarity=0.065 Sum_probs=175.6
Q ss_pred EEEEeCCCcEEEEEcCCCCc--eeEEeecCCCCeEEEEEccCCCEEEEEe-CCCcEEEEECC-CCcE--EEEEecCCCeE
Q 010871 203 LAYGASDGTLTVCTVSDPPK--VIKLLNGHSKDVTDFDFSSNNQYIASSS-MDKTVRVWELT-KGDC--IRVIYGVSSQL 276 (498)
Q Consensus 203 lasg~~dg~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~s-~dg~v~iwd~~-~~~~--~~~~~~~~~v~ 276 (498)
+++...++.|.+|++.+.++ .+..+. +.+....++++|++++|++++ .++.|.+|++. +++. +........+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 44446789999999974333 444454 446678899999999887664 47889999997 3432 23333334567
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEEEEcCCC----cEEEEeecCCCeEEEEEcCCCCEEEEE-cCCCeEEEEEccCCccccc
Q 010871 277 CIRFHPVNNNFLSVGNANKEITVFNFSTG----RIIKKLVVDSEVTSMDHDHTGQLLFCG-DAQGCIYSISMESHSGALS 351 (498)
Q Consensus 277 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~ 351 (498)
.++++|++..++++...++.|.+|++.+. +.+..+.......+++++|++++++++ ..++.|.+||++.. +.+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~-g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD-GHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC-Cccc
Confidence 89999977655555556899999999642 223333344557788999999988654 55699999999752 2221
Q ss_pred ccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-CCcEEEEEccccccceeeEeEeeccC----CceeeeEEEEee
Q 010871 352 RSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-DGNLSFFSVALEIQGYLTFRCSLKLA----PRVHSIRASFCP 426 (498)
Q Consensus 352 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 426 (498)
.................+.| +|++++++++.. ++.|.+|++................. .......+.++|
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~-----~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVF-----HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred ccCCCceecCCCCCCceEEE-----CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 10000000001112233444 499999988876 89999999974211111111111111 111122234454
Q ss_pred eeeccCCCEEEEEeC-CCcEEEEECCCCCc--cceeeecCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEeecC
Q 010871 427 LLSLEKGEYIVAGSE-DSNVYFYDLAKPKH--SCVNKLQGHRFPVVAVAWNHGENLLASSDL-YGIVIVWKRA 495 (498)
Q Consensus 427 ~~~~~~~~~l~~gs~-dg~I~iwd~~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg~i~iW~~~ 495 (498)
++++++++.. ++.|.+|++..... ..+..... ......++|+|+|++|++++. +++|.+|+++
T Consensus 238 -----dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 238 -----DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred -----CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999988854 68999999965321 22222222 134568999999999998775 8999999875
No 162
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.83 E-value=2.7e-18 Score=172.99 Aligned_cols=300 Identities=19% Similarity=0.253 Sum_probs=209.0
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC------ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCc
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP------KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKT 254 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~------~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~ 254 (498)
..+..|...|..++.++..+.++++||.||+|++|+...-. +...++......+.++.+.+.++.+|.++.||.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 34677899999999999677999999999999999987411 122334445788999999999999999999999
Q ss_pred EEEEECCCC--c-----EEEEEecC--CCeE-EEEEEcCCCc-EEEEEeCCCcEEEEEcCCCcEEEEee---cCCCeEEE
Q 010871 255 VRVWELTKG--D-----CIRVIYGV--SSQL-CIRFHPVNNN-FLSVGNANKEITVFNFSTGRIIKKLV---VDSEVTSM 320 (498)
Q Consensus 255 v~iwd~~~~--~-----~~~~~~~~--~~v~-~i~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~i~~l 320 (498)
|++.+++.. + +.+....+ +.++ .-+|...... .++.+...+.|..||+++......++ ..+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998862 1 22222222 3333 3344444444 78888889999999999887776664 45789999
Q ss_pred EEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE--cCCcEEEEEcc
Q 010871 321 DHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT--QDGNLSFFSVA 398 (498)
Q Consensus 321 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s--~dg~i~iwd~~ 398 (498)
+.+|.+++++.|+..|.+.+||++.........+ .+..++..+..+++. +.....++++ ..+.|.+|++.
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~------P~~~~i~~v~~~~~~--~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH------PARAPIRHVWLCPTY--PQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCceeecccC------cccCCcceEEeeccC--CCCceEEEecccCCCceeeeecc
Confidence 9999999999999999999999987665444332 334667777666443 4445555554 46789999999
Q ss_pred ccccceeeEeE-e---ec----c-----CCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCcc---------
Q 010871 399 LEIQGYLTFRC-S---LK----L-----APRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHS--------- 456 (498)
Q Consensus 399 ~~~~~~~~~~~-~---~~----~-----~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~--------- 456 (498)
++...+..... . .. . +.....+.+.+. ..+.++.+|+.|..|+.||...+...
T Consensus 1274 ~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-----~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~ 1348 (1431)
T KOG1240|consen 1274 TGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC-----EKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPST 1348 (1431)
T ss_pred cCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc-----cCCceeeecCCccceeeccCCCcccccccccCccc
Confidence 87544333222 0 00 0 111112222222 36778999999999999998653211
Q ss_pred -------------------------------------ceee--------ecCCCCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 010871 457 -------------------------------------CVNK--------LQGHRFPVVAVAWNHG-ENLLASSDLYGIVI 490 (498)
Q Consensus 457 -------------------------------------~~~~--------~~~h~~~V~~l~~sp~-~~~l~s~~~Dg~i~ 490 (498)
.... -..|..+|+++++... ..+|++++.||.|+
T Consensus 1349 ~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~Ik 1428 (1431)
T KOG1240|consen 1349 SYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIK 1428 (1431)
T ss_pred cccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeee
Confidence 0000 1147788999987643 45899999999999
Q ss_pred Eee
Q 010871 491 VWK 493 (498)
Q Consensus 491 iW~ 493 (498)
||.
T Consensus 1429 iWk 1431 (1431)
T KOG1240|consen 1429 IWK 1431 (1431)
T ss_pred ecC
Confidence 995
No 163
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.7e-17 Score=162.58 Aligned_cols=306 Identities=18% Similarity=0.218 Sum_probs=211.2
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCC---CCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD---PPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~---~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
+-..|.-.++|.++|| .++++|+|..||.|.+|.--. .....+.+.-|...|.+++|+++|.+|+||+..|.+.+|
T Consensus 200 ~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 200 ITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence 3455777899999999 999999999999999997432 134466788899999999999999999999999999999
Q ss_pred ECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee------------cCCCeEEEEEcCCC
Q 010871 259 ELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV------------VDSEVTSMDHDHTG 326 (498)
Q Consensus 259 d~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------------~~~~i~~l~~~~~~ 326 (498)
.+++++....-+-.+.+..+.++|++. +.+....|..|.+....+......+. ..+-.+.++++|.-
T Consensus 279 q~~T~~kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~ 357 (792)
T KOG1963|consen 279 QLETGKKQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT 357 (792)
T ss_pred eecCCCcccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence 999998443334557888999999664 55555579999999876655444442 13346788999977
Q ss_pred CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccc-eeeEEEeEeeEcCCCcEEEEEEc--------CC--cEEEE
Q 010871 327 QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCP-VTTVQYRSFSLLAGGPVLLTCTQ--------DG--NLSFF 395 (498)
Q Consensus 327 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~s~~~~~l~t~s~--------dg--~i~iw 395 (498)
+.++..+..|.|.+||+-............ ...+.+. -..+.......+..|.+++|.-. || .+++|
T Consensus 358 ~~~vln~~~g~vQ~ydl~td~~i~~~~v~~--~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW 435 (792)
T KOG1963|consen 358 NSLVLNGHPGHVQFYDLYTDSTIYKLQVCD--ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFW 435 (792)
T ss_pred CceeecCCCceEEEEeccccceeeeEEEEe--ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEE
Confidence 888888999999999987655442221111 1112222 22233333344466888888642 33 47889
Q ss_pred EccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC--------ccceeeecCCCCC
Q 010871 396 SVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK--------HSCVNKLQGHRFP 467 (498)
Q Consensus 396 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~--------~~~~~~~~~h~~~ 467 (498)
-.....+.... ......+.........+.+.. .....++++.||.++||-+...+ ..|...-.-|..+
T Consensus 436 ~~n~~~kt~~L-~T~I~~PH~~~~vat~~~~~~---rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~ 511 (792)
T KOG1963|consen 436 QYNPNSKTFIL-NTKINNPHGNAFVATIFLNPT---RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP 511 (792)
T ss_pred EEcCCcceeEE-EEEEecCCCceeEEEEEecCc---ccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence 87755444332 222233333333333444321 23388999999999999984321 2222222237889
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 468 VVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 468 V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+++++|+.||..|+ .+.|++|.+||..+
T Consensus 512 i~a~~fs~dGslla-~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 512 ITALCFSQDGSLLA-VSFDDTITIWDYDT 539 (792)
T ss_pred ccchhhcCCCcEEE-EecCCEEEEecCCC
Confidence 99999999996555 66789999999876
No 164
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=161.44 Aligned_cols=219 Identities=16% Similarity=0.205 Sum_probs=157.6
Q ss_pred ecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEe-ecCCCCeEEEEEcc--CCCEEEEEeCCC
Q 010871 177 VGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLL-NGHSKDVTDFDFSS--NNQYIASSSMDK 253 (498)
Q Consensus 177 ~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~s~--~~~~l~s~s~dg 253 (498)
+.+...|.||++.|+|++|+. +|.+|++|+.|-.+.|||.-. .++++.+ .||.+.|.++.|-| +++.+++|..|.
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~-~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFE-YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred cchhhhhccccceecceeecC-CCCEEeecCCcceEEeecchh-cceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 345667899999999999999 999999999999999999986 5555554 58999999999998 457899999999
Q ss_pred cEEEEECCCC----------cEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEE-------EEe----
Q 010871 254 TVRVWELTKG----------DCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRII-------KKL---- 311 (498)
Q Consensus 254 ~v~iwd~~~~----------~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-------~~~---- 311 (498)
.|+++|+... ...+.+..| ..|..++-.|.+.+.+.+++.||+|+-+|++..... ..+
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999999842 223333444 356678888988899999999999999999863211 111
Q ss_pred ecCCCeEEEEEcCCCC-EEEEEcCCCeEEEEEccCCcccc------ccccc-----c-cccCC--------CccceeeEE
Q 010871 312 VVDSEVTSMDHDHTGQ-LLFCGDAQGCIYSISMESHSGAL------SRSHR-----H-RTTGK--------RKCPVTTVQ 370 (498)
Q Consensus 312 ~~~~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~------~~~~~-----~-~~~~~--------~~~~i~~~~ 370 (498)
..--...++.++|... +|++|+.+-..++||.+...... ....+ . ....+ ....++++.
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 1123467889999765 88999999999999943211110 00000 0 00011 223344444
Q ss_pred EeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 371 YRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 371 ~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
+ +.++|+|..|++.-....|+++|+..
T Consensus 278 ~--vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 278 Y--VTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred E--EEECCCCcEEEEeeCCeEEEEEeecC
Confidence 4 34559998888877777899998763
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=8.9e-19 Score=160.46 Aligned_cols=261 Identities=16% Similarity=0.238 Sum_probs=180.9
Q ss_pred CCcEEEEEcCCCCceeEEeecCC--CCeEEEEEccCCCEEEE--EeCCCcEEEEECCCC--c--EEEEEecCCCeEEEEE
Q 010871 209 DGTLTVCTVSDPPKVIKLLNGHS--KDVTDFDFSSNNQYIAS--SSMDKTVRVWELTKG--D--CIRVIYGVSSQLCIRF 280 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~~~~~h~--~~V~~l~~s~~~~~l~s--~s~dg~v~iwd~~~~--~--~~~~~~~~~~v~~i~~ 280 (498)
...++|||+.. .+....+..|+ ..+.++.|..... |++ .+.|..|++|.-... + .+....+ ....|+..
T Consensus 11 gd~~kl~D~s~-~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g-d~~~Cv~~ 87 (673)
T KOG4378|consen 11 GDKTKLSDFSD-LETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG-DNAFCVAC 87 (673)
T ss_pred CCceEEeeccc-ccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeecccc-chHHHHhh
Confidence 34599999986 33333333332 3489999987663 444 456788999975533 1 1222222 24445555
Q ss_pred EcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccccccccccc
Q 010871 281 HPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTT 359 (498)
Q Consensus 281 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 359 (498)
... ..++++|+..+.|+|||++...+.+.+ .|...|+++.++-...+|++++..|.|.+..+.+........
T Consensus 88 ~s~-S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~------ 160 (673)
T KOG4378|consen 88 ASQ-SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT------ 160 (673)
T ss_pred hhc-ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee------
Confidence 443 378999999999999999966565555 588999999999999999999999999999886554332221
Q ss_pred CCCccceeeEEEeEeeEcCCC-cEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEE
Q 010871 360 GKRKCPVTTVQYRSFSLLAGG-PVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVA 438 (498)
Q Consensus 360 ~~~~~~i~~~~~~~~~~s~~~-~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (498)
......|.-+.|+ +.. .+|.+++.+|.|.+||+..... .+.....+..+... ++|+| .+..+|++
T Consensus 161 ~~sgqsvRll~ys-----~skr~lL~~asd~G~VtlwDv~g~sp---~~~~~~~HsAP~~g--icfsp----sne~l~vs 226 (673)
T KOG4378|consen 161 IDSGQSVRLLRYS-----PSKRFLLSIASDKGAVTLWDVQGMSP---IFHASEAHSAPCRG--ICFSP----SNEALLVS 226 (673)
T ss_pred cCCCCeEEEeecc-----cccceeeEeeccCCeEEEEeccCCCc---ccchhhhccCCcCc--ceecC----CccceEEE
Confidence 1122334456665 444 4567889999999999985432 11122223333333 37787 47889999
Q ss_pred EeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 439 GSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 439 gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.+.|..|++||..... ....+. -..+...++|.++|.+|+.|...|.|..||+..
T Consensus 227 VG~Dkki~~yD~~s~~--s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQA--STDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred ecccceEEEeeccccc--ccceee-ecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 9999999999998743 333332 346889999999999999999999999999864
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=1.6e-18 Score=148.50 Aligned_cols=278 Identities=15% Similarity=0.204 Sum_probs=196.4
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCC-------CcEEEEEcCCCC--------ceeEEee-cCCCCeEEEEEccCC
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASD-------GTLTVCTVSDPP--------KVIKLLN-GHSKDVTDFDFSSNN 243 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~d-------g~i~iwd~~~~~--------~~~~~~~-~h~~~V~~l~~s~~~ 243 (498)
...|..|.+.|+.++-+|.+..+|+|+..+ ..+.||.+..+. +.+..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 346777899999999999888899888653 236799987532 2233343 456799999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcE-EEEEecC------CCeEEEEEEcC-CCcEEEEEeCCCcEEEEEcCCCcEEEEee--c
Q 010871 244 QYIASSSMDKTVRVWELTKGDC-IRVIYGV------SSQLCIRFHPV-NNNFLSVGNANKEITVFNFSTGRIIKKLV--V 313 (498)
Q Consensus 244 ~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~------~~v~~i~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~ 313 (498)
..|++-. |..|.+|++..+.. +..+... ....+.+|+|. +++.+++. .|+++..||+++......+. |
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhh
Confidence 9988876 78899999998765 3333321 24567889994 45556554 78999999999998888773 8
Q ss_pred CCCeEEEEEcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcE
Q 010871 314 DSEVTSMDHDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNL 392 (498)
Q Consensus 314 ~~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i 392 (498)
...|..+.|+|+.+ +|++++.||.|++||.+..+..+ ....+|...|.++.|.+ ....++++++.|..|
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv------~el~~HsHWvW~VRfn~----~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV------QELPGHSHWVWAVRFNP----EHDQLILSGGSDSAV 283 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc------cccCCCceEEEEEEecC----ccceEEEecCCCcee
Confidence 88999999999877 67899999999999998655433 33478889999999985 346789999999999
Q ss_pred EEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEE
Q 010871 393 SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVA 472 (498)
Q Consensus 393 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~ 472 (498)
.+|....-..... ..... |..-. -..|..=++=-+..+ .+.++..|...|++++
T Consensus 284 ~Lsca~svSSE~q-----i~~~~----------------dese~--e~~dseer~kpL~dg---~l~tydehEDSVY~~a 337 (370)
T KOG1007|consen 284 NLSCASSVSSEQQ-----IEFED----------------DESES--EDEDSEERVKPLQDG---QLETYDEHEDSVYALA 337 (370)
T ss_pred EEEeccccccccc-----ccccc----------------ccccC--cchhhHHhccccccc---ccccccccccceEEEe
Confidence 9997653211000 00000 00000 000100011122222 3667888999999999
Q ss_pred EcCCCC-EEEEEeCCCeEEEeecC
Q 010871 473 WNHGEN-LLASSDLYGIVIVWKRA 495 (498)
Q Consensus 473 ~sp~~~-~l~s~~~Dg~i~iW~~~ 495 (498)
|+.-.. ++|+-+.||.+.|=++.
T Consensus 338 WSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eccCCCeeEEEeccCceEEeecCC
Confidence 996544 67888999999986654
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=3.7e-19 Score=155.11 Aligned_cols=255 Identities=16% Similarity=0.265 Sum_probs=180.6
Q ss_pred ccccEEEEEEecC---CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECC
Q 010871 186 CKAAVTILKFGHM---SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELT 261 (498)
Q Consensus 186 h~~~V~~v~~sp~---~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~ 261 (498)
|...-..++|+-+ ...+||.||.-|.|+|.|+.+ .+....+.+|...|..|.|.|+. ++|+++|.|.+|++|+++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 5566677777652 245899999999999999998 88899999999999999999976 789999999999999999
Q ss_pred CCcEEEEEec---C-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe--------------------------
Q 010871 262 KGDCIRVIYG---V-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-------------------------- 311 (498)
Q Consensus 262 ~~~~~~~~~~---~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-------------------------- 311 (498)
+..|+..+.+ | ..|.++.|++++ ..+++++.|.+|++|++...+....+
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 9999999864 4 478999999966 58999999999999999743211111
Q ss_pred ---ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccc----cccCCCccceeeEEEeEeeEcCCCcEEE
Q 010871 312 ---VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRH----RTTGKRKCPVTTVQYRSFSLLAGGPVLL 384 (498)
Q Consensus 312 ---~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~s~~~~~l~ 384 (498)
-|...|.|+.|. |+++++-+.++.|..|.............+. ..+..-.-+--.+-|..+++.+-++.|+
T Consensus 246 t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 133444455553 5788888999999999763211111100000 0011111122234455677888899999
Q ss_pred EEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 385 TCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 385 t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
.|...|.|.+||++................. ..-..+|+- ||.+|+....|++|.-||..
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~--tVRQ~sfS~-----dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGS--TVRQTSFSR-----DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccc--eeeeeeecc-----cCcEEEEEeCCCcEEEEEee
Confidence 9999999999999876543221111111111 122235554 99999999999999999864
No 168
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=3.7e-18 Score=169.54 Aligned_cols=290 Identities=15% Similarity=0.255 Sum_probs=199.5
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecC---CCCeEEEEEcc--CCCEEEEEeCCCcEEEEECC-
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGH---SKDVTDFDFSS--NNQYIASSSMDKTVRVWELT- 261 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h---~~~V~~l~~s~--~~~~l~s~s~dg~v~iwd~~- 261 (498)
.+-..+.|+| -...++++...-.|+|||.+. ++....|..+ ...|+.+.+-. |..+|++|+.||.|+||+--
T Consensus 1065 ~~pk~~~~hp-f~p~i~~ad~r~~i~vwd~e~-~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1065 QPPKTLKFHP-FEPQIAAADDRERIRVWDWEK-GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCceeeecC-CCceeEEcCCcceEEEEeccc-CceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3456788998 677888888778899999987 6666666533 45789999865 44689999999999999743
Q ss_pred C----CcEEEEEec---C-----CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee--cCCCeEEEEEcC-CC
Q 010871 262 K----GDCIRVIYG---V-----SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV--VDSEVTSMDHDH-TG 326 (498)
Q Consensus 262 ~----~~~~~~~~~---~-----~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~i~~l~~~~-~~ 326 (498)
. .+.+....+ . +.-.-+.|....+.++++| .-..|+|||....+.+..+. ....|+++.-+. .|
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 2 122222221 1 1113456666555555555 57899999999988888874 455677776543 46
Q ss_pred CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccc--eeeEEEeEeeEcCCCc-EEEEEEcCCcEEEEEcccc-cc
Q 010871 327 QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCP--VTTVQYRSFSLLAGGP-VLLTCTQDGNLSFFSVALE-IQ 402 (498)
Q Consensus 327 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~s~~~~-~l~t~s~dg~i~iwd~~~~-~~ 402 (498)
+.+++|..||.|++||.+....... ......|... |..+.+. +.|- .|++|+.+|.|++||++.. ..
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~----v~~~R~h~~~~~Iv~~slq-----~~G~~elvSgs~~G~I~~~DlR~~~~e 1292 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSL----VCVYREHNDVEPIVHLSLQ-----RQGLGELVSGSQDGDIQLLDLRMSSKE 1292 (1387)
T ss_pred ceEEEeecCCceEEeecccCCcccc----ceeecccCCcccceeEEee-----cCCCcceeeeccCCeEEEEecccCccc
Confidence 8999999999999999986554311 1122455554 7777665 5554 5999999999999999973 22
Q ss_pred ceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec----CCCCCeEEEEEcCCCC
Q 010871 403 GYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ----GHRFPVVAVAWNHGEN 478 (498)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~----~h~~~V~~l~~sp~~~ 478 (498)
.+........... ..+.+.+.++...+|+|+. +.|+||++.......+.... ...+.+.|++|||-.-
T Consensus 1293 ~~~~iv~~~~yGs-------~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1293 TFLTIVAHWEYGS-------ALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred ccceeeeccccCc-------cceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhH
Confidence 2222222221121 1233344458899999998 99999999864322222111 1235689999999999
Q ss_pred EEEEEeCCCeEEEeecCCC
Q 010871 479 LLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 479 ~l~s~~~Dg~i~iW~~~~~ 497 (498)
+||.|+.|.+|.||..+++
T Consensus 1365 llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1365 LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hhhhccCCceEEEeecCCc
Confidence 9999999999999987764
No 169
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=7.5e-19 Score=155.84 Aligned_cols=165 Identities=16% Similarity=0.291 Sum_probs=137.9
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCce--eEEeecCCCCeEEEEEccCC-CEEEEEeCCCcEEE
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV--IKLLNGHSKDVTDFDFSSNN-QYIASSSMDKTVRV 257 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~--~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~i 257 (498)
..+.+|++.=+.++|||.....|++|.--+.|++|...++.-. ...|.+|+..|-.|+|+|.. ..|+|||.||+|+|
T Consensus 205 ~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 205 FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred EEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEE
Confidence 3568899999999999966667999988899999999874322 23467899999999999964 58999999999999
Q ss_pred EECCCC---cEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC---CcEEEEe-ecCCCeEEEEEcCCC-CEE
Q 010871 258 WELTKG---DCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST---GRIIKKL-VVDSEVTSMDHDHTG-QLL 329 (498)
Q Consensus 258 wd~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~-~~~~~i~~l~~~~~~-~~l 329 (498)
||++.+ .++.+-.+.+.|..+.|+.... +|++|+.||+++|||+++ ++++..+ .|..+|+++.|+|.. ..|
T Consensus 285 WDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 285 WDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred EEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceE
Confidence 999988 4555544456899999998554 999999999999999975 5677778 489999999999875 478
Q ss_pred EEEcCCCeEEEEEccCC
Q 010871 330 FCGDAQGCIYSISMESH 346 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~ 346 (498)
++++.|.+|.+||+...
T Consensus 364 aasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 364 AASGEDNQITIWDLSVE 380 (440)
T ss_pred EeccCCCcEEEEEeecc
Confidence 89999999999998643
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.2e-18 Score=155.33 Aligned_cols=208 Identities=14% Similarity=0.233 Sum_probs=161.0
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC------CceeEEeecCCCCeEEEEEccCC-CEEEEEeCCCc
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP------PKVIKLLNGHSKDVTDFDFSSNN-QYIASSSMDKT 254 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~------~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~ 254 (498)
.+.||+++|..++|+|.+...||+||.|.+|.||++..+ .+.+..|.||...|--++|+|.. +.|+|++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 568999999999999999999999999999999998753 24577899999999999999965 58899999999
Q ss_pred EEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecC-CCeEEEEEcCCCCEEEEE
Q 010871 255 VRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVD-SEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~-~~i~~l~~~~~~~~l~~~ 332 (498)
|.+||+.+|+.+.++.+..-+.++.|+. ++.++++.+.|..|+|||.++++.+..- .|. ..-..+.|..+|.++.+|
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999999998667888999998 5578999999999999999999999877 343 345556677888866565
Q ss_pred c---CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEE-EEcCCcEEEEEcccc
Q 010871 333 D---AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT-CTQDGNLSFFSVALE 400 (498)
Q Consensus 333 ~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t-~s~dg~i~iwd~~~~ 400 (498)
. .+..+-+||-........... ....+.|.---+ .++...++. |-.|+.|+.|.+...
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~e-----lDtSnGvl~PFy-----D~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQE-----LDTSNGVLLPFY-----DPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred cccccccceeccCcccccCcceeEE-----eccCCceEEeee-----cCCCCEEEEEecCCcceEEEEecCC
Confidence 4 366788998765443321111 111111221112 266666655 457999999998754
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.2e-19 Score=182.15 Aligned_cols=285 Identities=14% Similarity=0.268 Sum_probs=202.3
Q ss_pred EEEEEecCCCCEEEEEe----------CCCcEEEEEcCCC--C---ceeEEeecCCCCeEEEEEccCCCE----EEEEeC
Q 010871 191 TILKFGHMSSDLLAYGA----------SDGTLTVCTVSDP--P---KVIKLLNGHSKDVTDFDFSSNNQY----IASSSM 251 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~----------~dg~i~iwd~~~~--~---~~~~~~~~h~~~V~~l~~s~~~~~----l~s~s~ 251 (498)
..++|+|....++|+|. .+.++-||.+... . +.+..+. -......|+|.+.|.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 35788884433666653 3556667766531 1 1222222 3456789999987754 889999
Q ss_pred CCcEEEEECCC---C---cEEEEEec-CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe---ecCCCeEEEE
Q 010871 252 DKTVRVWELTK---G---DCIRVIYG-VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL---VVDSEVTSMD 321 (498)
Q Consensus 252 dg~v~iwd~~~---~---~~~~~~~~-~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~i~~l~ 321 (498)
||.|.+||... + ..+.+... ++.|..+.|++..+++|++|+.||.|.|||+...+.-... .....|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999999875 2 23344444 4688999999999999999999999999999875544444 2457899999
Q ss_pred EcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC-cEEEEEEcCC---cEEEEE
Q 010871 322 HDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG-PVLLTCTQDG---NLSFFS 396 (498)
Q Consensus 322 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~-~~l~t~s~dg---~i~iwd 396 (498)
|+..-. .|++++.+|.+.|||++.....+.... ......+..+.|+ |+. ..|++++.|. .|.+||
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~-----~~~~~~~S~l~Wh-----P~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD-----TPGRMHCSVLAWH-----PDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCccccccc-----CCCccceeeeeeC-----CCCceeeeeecCCCCCceeEeec
Confidence 987644 778899999999999987643332221 1111334455555 765 4566666654 589999
Q ss_pred ccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCC
Q 010871 397 VALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHG 476 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~ 476 (498)
++......... ..+....+...|++ .|..++++++.|+.|.+|+..+++ .+..+......+..+.|+|.
T Consensus 239 lR~assP~k~~-----~~H~~GilslsWc~----~D~~lllSsgkD~~ii~wN~~tgE--vl~~~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 239 LRFASSPLKIL-----EGHQRGILSLSWCP----QDPRLLLSSGKDNRIICWNPNTGE--VLGELPAQGNWCFDVQWCPR 307 (1049)
T ss_pred ccccCCchhhh-----cccccceeeeccCC----CCchhhhcccCCCCeeEecCCCce--EeeecCCCCcceeeeeecCC
Confidence 88532211111 12223345558888 577999999999999999999954 68888888889999999997
Q ss_pred CC-EEEEEeCCCeEEEeecCCC
Q 010871 477 EN-LLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 477 ~~-~l~s~~~Dg~i~iW~~~~~ 497 (498)
.. .++.++.||.|.|+.+...
T Consensus 308 ~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 308 NPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CcchhhhheeccceeeeeeecC
Confidence 66 8888999999999998754
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.1e-19 Score=164.28 Aligned_cols=252 Identities=16% Similarity=0.211 Sum_probs=176.3
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCC-------CCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCc
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD-------PPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKT 254 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~-------~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~ 254 (498)
.+.-|.+.|+.++|.| ....|++++.||+|.+|+++. ..+++.+|.+|.++|.|+++.+++.++++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 5677899999999999 888999999999999999932 13578889999999999999999999999999999
Q ss_pred EEEEECCCC----------cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee---cCCCeEEE
Q 010871 255 VRVWELTKG----------DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV---VDSEVTSM 320 (498)
Q Consensus 255 v~iwd~~~~----------~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~i~~l 320 (498)
|+.|++... .....+.+|. .+..+++++ ....|++++.||++++|+...... ..+. ......++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence 999976522 2334566775 555888888 456788899999999999876665 3332 22334455
Q ss_pred EEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 321 DHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 321 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
.+-... ++-...+.....+++..... +..+ .++-.+.+...+.++.
T Consensus 446 d~~ss~--~a~~~~s~~~~~~~~~~~ev-----------------~s~~------------~~~~s~~~~~~~~~~~--- 491 (577)
T KOG0642|consen 446 DRTSSR--PAHSLASFRFGYTSIDDMEV-----------------VSDL------------LIFESSASPGPRRYPQ--- 491 (577)
T ss_pred eeccch--hHhhhhhcccccccchhhhh-----------------hhhe------------eeccccCCCcccccCc---
Confidence 543322 11111122222222211100 0000 0111111111111111
Q ss_pred ccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEE
Q 010871 401 IQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLL 480 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 480 (498)
+ ....+.| .+.+.+++..|+.|+++|..+++ ++.....|...++++++.|+|.+|
T Consensus 492 ----------------i--n~vVs~~-----~~~~~~~~hed~~Ir~~dn~~~~--~l~s~~a~~~svtslai~~ng~~l 546 (577)
T KOG0642|consen 492 ----------------I--NKVVSHP-----TADITFTAHEDRSIRFFDNKTGK--ILHSMVAHKDSVTSLAIDPNGPYL 546 (577)
T ss_pred ----------------c--ceEEecC-----CCCeeEecccCCceecccccccc--cchheeeccceecceeecCCCceE
Confidence 0 1112333 77889999999999999999954 688899999999999999999999
Q ss_pred EEEeCCCeEEEeecC
Q 010871 481 ASSDLYGIVIVWKRA 495 (498)
Q Consensus 481 ~s~~~Dg~i~iW~~~ 495 (498)
++++.||.+++|++.
T Consensus 547 ~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 547 MSGSHDGSVRLWKLD 561 (577)
T ss_pred EeecCCceeehhhcc
Confidence 999999999999985
No 173
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=6.7e-18 Score=153.46 Aligned_cols=260 Identities=15% Similarity=0.219 Sum_probs=184.4
Q ss_pred CceeEEeecCCCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCC----cEEEEEecC-CCeEEEEEEcCCCcEEEEEeC
Q 010871 221 PKVIKLLNGHSKDVTDFDFSSNN--QYIASSSMDKTVRVWELTKG----DCIRVIYGV-SSQLCIRFHPVNNNFLSVGNA 293 (498)
Q Consensus 221 ~~~~~~~~~h~~~V~~l~~s~~~--~~l~s~s~dg~v~iwd~~~~----~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~ 293 (498)
.......+-|.+.|++++|+|.. +++++|..-|+|-+||+.+. ..+..+..| .+|.++.|+|.+...+++.+.
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence 34445566789999999999965 57888999999999999532 234445555 478899999999999999999
Q ss_pred CCcEEEEEcCCCcEEEEee---cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEE
Q 010871 294 NKEITVFNFSTGRIIKKLV---VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQ 370 (498)
Q Consensus 294 dg~i~iwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 370 (498)
||+|++-|++.+.....+. ....+.++.|+.+...++.++.=|.+.+||++........ ...|+..|.++.
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~------~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN------LRLHKKKITSVA 329 (498)
T ss_pred CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh------hhhhhcccceee
Confidence 9999999998765433332 3455778889888888888888889999999876654332 245666899998
Q ss_pred EeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEEC
Q 010871 371 YRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDL 450 (498)
Q Consensus 371 ~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~ 450 (498)
+.++ ...+|+|++.|++.+|||++.-......+... .........+.|+| .+..|++.+.|..|+|||.
T Consensus 330 ~NP~----~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst--~~HrrsV~sAyFSP-----s~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 330 LNPV----CPWFLATASLDQTAKIWDLRQLRGKASPFLST--LPHRRSVNSAYFSP-----SGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred cCCC----CchheeecccCcceeeeehhhhcCCCCcceec--ccccceeeeeEEcC-----CCCceEeeccCCceEEeec
Confidence 8853 35689999999999999998532221111111 12222222335666 6666999999999999998
Q ss_pred C--CCCccceeeecC---CCCC--eEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 451 A--KPKHSCVNKLQG---HRFP--VVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 451 ~--~~~~~~~~~~~~---h~~~--V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
. .....+...+.. +... .....|.|+..++++|-.-..|-|++-+.+
T Consensus 399 s~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 399 SCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred ccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 4 111222333321 1122 344589999999999998888988886543
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=6e-16 Score=152.94 Aligned_cols=289 Identities=25% Similarity=0.438 Sum_probs=212.2
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeC-CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCC-EEEEEeCCCcEEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGAS-DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQ-YIASSSMDKTVRV 257 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~-dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~i 257 (498)
...+.+|...|.+++|+| ++..+++++. |+.+++|++.. ......+.+|...|.+++|+|++. .+++++.|+.|++
T Consensus 148 ~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 148 IRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred EEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCC-CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 446788999999999999 7888888886 99999999987 778888889999999999999998 5556699999999
Q ss_pred EECCCCcEEE-EEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE-EEEe-ecCCCeEEEEEcCCCCEEEEEcC
Q 010871 258 WELTKGDCIR-VIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI-IKKL-VVDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 258 wd~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~-~~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
||...+..+. .+..|.......|.+++ .++++++.|+.+++|++..... +..+ .|...+.++.|.|++..+++++.
T Consensus 226 wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred EECCCCcEEeeecCCCCcceeEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC
Confidence 9999888887 57777654322788866 7788999999999999987664 4444 56789999999998888888888
Q ss_pred CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEE-EcCCcEEEEEccccccceeeEeEeecc
Q 010871 335 QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC-TQDGNLSFFSVALEIQGYLTFRCSLKL 413 (498)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~~~~~~~ 413 (498)
++.+.+|+........... ...|...+..+.+ . +++..++.+ ..|+.+.+|++.... . ......
T Consensus 305 d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~----~~~~~~~~~~~~d~~~~~~~~~~~~----~-~~~~~~ 369 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLT-----LKGHEGPVSSLSF-S----PDGSLLVSGGSDDGTIRLWDLRTGK----P-LKTLEG 369 (466)
T ss_pred CCcEEEEEcCCCceEEEee-----ecccCCceEEEEE-C----CCCCEEEEeecCCCcEEeeecCCCc----e-eEEecC
Confidence 8889999775443222211 1345555665555 2 334555555 688899999987543 0 000011
Q ss_pred CCceeeeEEEEeeeeeccCCCEEE-EEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEe
Q 010871 414 APRVHSIRASFCPLLSLEKGEYIV-AGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVW 492 (498)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~l~-~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW 492 (498)
... .....+. ++ ..++ .+..++.+.+|+..... .......+...+....+.+++..+++++.++.+++|
T Consensus 370 ~~~--~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (466)
T COG2319 370 HSN--VLSVSFS-----PD-GRVVSSGSTDGTVRLWDLSTGS--LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439 (466)
T ss_pred Cce--EEEEEEC-----CC-CCEEEEecCCCceEEEecccCe--eeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEE
Confidence 110 1111222 22 2333 37889999999999844 333333332789999999999999999999999999
Q ss_pred ecCC
Q 010871 493 KRAK 496 (498)
Q Consensus 493 ~~~~ 496 (498)
++..
T Consensus 440 ~~~~ 443 (466)
T COG2319 440 DLKT 443 (466)
T ss_pred eccC
Confidence 9764
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=2.1e-17 Score=143.97 Aligned_cols=246 Identities=15% Similarity=0.230 Sum_probs=170.9
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCC--------------cEEEEEecCCCeEEEEEEc------CCCcEEEEEeC
Q 010871 234 VTDFDFSSNNQYIASSSMDKTVRVWELTKG--------------DCIRVIYGVSSQLCIRFHP------VNNNFLSVGNA 293 (498)
Q Consensus 234 V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~--------------~~~~~~~~~~~v~~i~~~~------~~~~~l~~g~~ 293 (498)
...+.|+|||..|++-+.|..+++|++... .....+.....+...+|.+ .+.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 356889999999999999999999997521 1112222334566667753 14578899999
Q ss_pred CCcEEEEEcCCCcEEEEee---cCC---CeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccc-cccccccccCCCccce
Q 010871 294 NKEITVFNFSTGRIIKKLV---VDS---EVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGAL-SRSHRHRTTGKRKCPV 366 (498)
Q Consensus 294 dg~i~iwd~~~~~~~~~~~---~~~---~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~i 366 (498)
+.-|.+||.-+|+....+. |.. ...+++|+|+|..|++|. ...|++||+....... ......+...+..+-|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 9999999999998877763 333 456899999999998876 6789999984322211 1111111123345556
Q ss_pred eeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeC-CCcE
Q 010871 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE-DSNV 445 (498)
Q Consensus 367 ~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-dg~I 445 (498)
.++.+++ .+...+++++....+-||.-...... .....+.+.++.+ .|++ +|+.|++|.. |-.|
T Consensus 211 sc~a~sP----~~~~~~a~gsY~q~~giy~~~~~~pl----~llggh~gGvThL--~~~e-----dGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 211 SCFAFSP----MDSKTLAVGSYGQRVGIYNDDGRRPL----QLLGGHGGGVTHL--QWCE-----DGNKLFSGARKDDKI 275 (406)
T ss_pred eeeeccC----CCCcceeeecccceeeeEecCCCCce----eeecccCCCeeeE--Eecc-----CcCeecccccCCCeE
Confidence 6666653 24458899998888888876543221 1222334444433 6776 9999999987 6789
Q ss_pred EEEECCCCCccceeeecCCCC-CeEEEEE--cCCCCEEEEEeCCCeEEEeecCC
Q 010871 446 YFYDLAKPKHSCVNKLQGHRF-PVVAVAW--NHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 446 ~iwd~~~~~~~~~~~~~~h~~-~V~~l~~--sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
..||++... .++..+..|.+ .-..|-| .|++++|++|+.||.|++||+.+
T Consensus 276 l~WDiR~~~-~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 276 LCWDIRYSR-DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred EEEeehhcc-chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 999999764 46777888876 3334444 58999999999999999999987
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=2.6e-17 Score=147.60 Aligned_cols=283 Identities=16% Similarity=0.260 Sum_probs=190.5
Q ss_pred eeeeecCCCCCCCccCCCCCcce---eecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcC--------C--
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYS---FVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVS--------D-- 219 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~--------~-- 219 (498)
.......+..+++|......+-. -+..+..|.+|..+|++|.|+| +|++||+|+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~ 106 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEA 106 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchh
Confidence 44556667788888777665544 3446778999999999999999 99999999999999999876 1
Q ss_pred ---C--CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeC
Q 010871 220 ---P--PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNA 293 (498)
Q Consensus 220 ---~--~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~ 293 (498)
. -...+.+.+|...|..++|+|++.++++++.|..+++||+..|+.+..+..|. .+..++|.|. ..++++-+.
T Consensus 107 ~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl-~qyv~s~s~ 185 (434)
T KOG1009|consen 107 DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPL-NQYVASKSS 185 (434)
T ss_pred hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchh-hhhhhhhcc
Confidence 0 12355678899999999999999999999999999999999999999998885 6778999994 467777777
Q ss_pred CCcEEEEEcCCCcEEEEee--------------------c----CCCeEEEEEcCCCCEEEEEcC----CC-----eEEE
Q 010871 294 NKEITVFNFSTGRIIKKLV--------------------V----DSEVTSMDHDHTGQLLFCGDA----QG-----CIYS 340 (498)
Q Consensus 294 dg~i~iwd~~~~~~~~~~~--------------------~----~~~i~~l~~~~~~~~l~~~~~----dg-----~i~i 340 (498)
|...+++.+...+.+.... | ..-...++|+|+|.++++... .+ ..++
T Consensus 186 dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYv 265 (434)
T KOG1009|consen 186 DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYV 265 (434)
T ss_pred CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEe
Confidence 8777776665443332221 1 122456789999998887632 22 2344
Q ss_pred EEccCCcccccccccccccCCCccceeeEEEeEeeE-------------cCCCcEEEEEEcCCcEEEEEccccccceeeE
Q 010871 341 ISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSL-------------LAGGPVLLTCTQDGNLSFFSVALEIQGYLTF 407 (498)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 407 (498)
|+-...... ...+.....+...+.+.++.+ .|.+..++.++.+ .+.+||.+....-..
T Consensus 266 fsrk~l~rP------~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~-- 336 (434)
T KOG1009|consen 266 FSRKDLKRP------AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAV-- 336 (434)
T ss_pred eccccccCc------eeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccccceEE--
Confidence 432211111 111233344445555543321 1334455666554 899999874321110
Q ss_pred eEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC
Q 010871 408 RCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~ 454 (498)
.. .++ -...+-+++++||.+++..+.||...+..+...+
T Consensus 337 -v~-----nih--y~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 337 -VD-----NIH--YSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred -Ee-----eee--eeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 00 011 1123334445599999999999988877776543
No 177
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.6e-17 Score=140.95 Aligned_cols=219 Identities=21% Similarity=0.292 Sum_probs=147.3
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----cEEEEEecC-CCeEEEEEEc-CCCcEEEEEeCCCcEEEEE
Q 010871 228 NGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG----DCIRVIYGV-SSQLCIRFHP-VNNNFLSVGNANKEITVFN 301 (498)
Q Consensus 228 ~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~~~-~~v~~i~~~~-~~~~~l~~g~~dg~i~iwd 301 (498)
.+|.+-|.++.|.+.|+.+++|+.|++|+|||.+.. .+....+.| +.+..+.|.+ .=++.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 479999999999999999999999999999997644 345555666 4778888854 4578999999999999997
Q ss_pred cCCC---------cEEEEe-ecCCCeEEEEEcCC--CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeE
Q 010871 302 FSTG---------RIIKKL-VVDSEVTSMDHDHT--GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTV 369 (498)
Q Consensus 302 ~~~~---------~~~~~~-~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~ 369 (498)
-... ....++ .....|+.+.|.|. |-.|++++.||.++||+......
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n--------------------- 148 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN--------------------- 148 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc---------------------
Confidence 5211 111222 24567888888775 45777888888888886532111
Q ss_pred EEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC-----Cc
Q 010871 370 QYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED-----SN 444 (498)
Q Consensus 370 ~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----g~ 444 (498)
++-|.+....+.... ..........+..|++-.. ...+||.|+.+ +.
T Consensus 149 ----------------------Ls~W~Lq~Ei~~~~~----pp~~~~~~~~CvsWn~sr~--~~p~iAvgs~e~a~~~~~ 200 (361)
T KOG2445|consen 149 ----------------------LSQWTLQHEIQNVID----PPGKNKQPCFCVSWNPSRM--HEPLIAVGSDEDAPHLNK 200 (361)
T ss_pred ----------------------cccchhhhhhhhccC----CcccccCcceEEeeccccc--cCceEEEEcccCCccccc
Confidence 111222111000000 0001111222334554222 45678888876 47
Q ss_pred EEEEECCCC--CccceeeecCCCCCeEEEEEcCC----CCEEEEEeCCCeEEEeecCC
Q 010871 445 VYFYDLAKP--KHSCVNKLQGHRFPVVAVAWNHG----ENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 445 I~iwd~~~~--~~~~~~~~~~h~~~V~~l~~sp~----~~~l~s~~~Dg~i~iW~~~~ 496 (498)
++||..... +...+.++.+|..+|++|+|.|+ ..+||+++.|| |+||++..
T Consensus 201 ~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 201 VKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred eEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 888887654 34456788899999999999996 35899999999 99999873
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=1.8e-15 Score=149.49 Aligned_cols=290 Identities=27% Similarity=0.478 Sum_probs=210.6
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCC-CCeEEEEE-ccCCC-EEEEEeC-CCcEEE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHS-KDVTDFDF-SSNNQ-YIASSSM-DKTVRV 257 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~-~~V~~l~~-s~~~~-~l~s~s~-dg~v~i 257 (498)
.+.+|...|.++.|.+ .+..++.++.|+.+.+|+..........+.++. ..+..+.+ .+++. .++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 5678899999999999 899999999999999999987332666676644 37788777 78777 5555444 999999
Q ss_pred EECCC-CcEEEEEecCC-CeEEEEEEcCCCcEEEEEeC-CCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCC-EEEEE
Q 010871 258 WELTK-GDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNA-NKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQ-LLFCG 332 (498)
Q Consensus 258 wd~~~-~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~l~~~ 332 (498)
|+... ......+..|. .+..+.|+|++. .+++++. ++.+++|++..+..+..+. |...+.+++|+|++. .++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 99998 77777777774 667899999665 6666665 9999999999888887775 789999999999998 55555
Q ss_pred cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeec
Q 010871 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLK 412 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 412 (498)
+.|+.|++||.. ....... ....|.... .. .+++++..+++++.|+.+++|++....... .....
T Consensus 218 ~~d~~i~~wd~~--~~~~~~~----~~~~~~~~~-~~-----~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~ 282 (466)
T COG2319 218 SSDGTIRLWDLS--TGKLLRS----TLSGHSDSV-VS-----SFSPDGSLLASGSSDGTIRLWDLRSSSSLL---RTLSG 282 (466)
T ss_pred cCCCcEEEEECC--CCcEEee----ecCCCCcce-eE-----eECCCCCEEEEecCCCcEEEeeecCCCcEE---EEEec
Confidence 999999999765 2221110 123444442 22 333888889999999999999998654311 11111
Q ss_pred cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeee--cCCCCCeEEEEEcCCCCEEEEE-eCCCeE
Q 010871 413 LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL--QGHRFPVVAVAWNHGENLLASS-DLYGIV 489 (498)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~s~-~~Dg~i 489 (498)
+...+..+ .|.| ++..+++++.|+.+.+|+..+... .... ..|...+..+.|.+++..++.+ ..|+.+
T Consensus 283 ~~~~v~~~--~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 283 HSSSVLSV--AFSP-----DGKLLASGSSDGTVRLWDLETGKL--LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred CCccEEEE--EECC-----CCCEEEEeeCCCcEEEEEcCCCce--EEEeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence 12222222 4444 788888899999999998887542 3333 3788889999994332556555 688999
Q ss_pred EEeecCCC
Q 010871 490 IVWKRAKT 497 (498)
Q Consensus 490 ~iW~~~~~ 497 (498)
.+|++...
T Consensus 354 ~~~~~~~~ 361 (466)
T COG2319 354 RLWDLRTG 361 (466)
T ss_pred EeeecCCC
Confidence 99998753
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=5.5e-17 Score=158.75 Aligned_cols=273 Identities=17% Similarity=0.218 Sum_probs=189.8
Q ss_pred CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCcE--EEEE-----ecCCCeEEEEE
Q 010871 209 DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSN-NQYIASSSMDKTVRVWELTKGDC--IRVI-----YGVSSQLCIRF 280 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~~--~~~~-----~~~~~v~~i~~ 280 (498)
++.+.||++..+..+...+. -...|.|+.|+|. ..+|+.|+.+|.|.+||+..+.. ...+ .+..++..+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 35799999998656666665 4678999999995 46788889999999999987654 2222 22357788888
Q ss_pred EcCCC-cEEEEEeCCCcEEEEEcCCCcE-EEE-----e-------ecCCCeEEEEEcCCC-CEEEEEcCCCeEEEEEccC
Q 010871 281 HPVNN-NFLSVGNANKEITVFNFSTGRI-IKK-----L-------VVDSEVTSMDHDHTG-QLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 281 ~~~~~-~~l~~g~~dg~i~iwd~~~~~~-~~~-----~-------~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~ 345 (498)
..... .-+++++.||.|..|+++.-.. +.. . .....++++.|.+.. ..+++|++.|.|+.-+...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 76422 3477888899999998764322 111 1 123468899998765 4799999999998844333
Q ss_pred Ccccc-cccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEE
Q 010871 346 HSGAL-SRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASF 424 (498)
Q Consensus 346 ~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (498)
.+... ...........|.++|+++.+.+|. .+.+++++ |.+++||............. ........++|
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~----~k~fls~g-DW~vriWs~~~~~~Pl~~~~-----~~~~~v~~vaW 449 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFY----PKNFLSVG-DWTVRIWSEDVIASPLLSLD-----SSPDYVTDVAW 449 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCc----cceeeeec-cceeEeccccCCCCcchhhh-----hccceeeeeEE
Confidence 22222 1112222357788999999888432 33444444 99999998763211111111 11111344588
Q ss_pred eeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 425 CPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 425 ~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+|. ....|+++..||.|.+||+......++.+..-+....+.+.|++.|++|+.|+..|++++|++..
T Consensus 450 Spt----rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 450 SPT----RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCc----CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 883 55789999999999999998776667777766777788889999999999999999999999863
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=2.2e-19 Score=173.96 Aligned_cols=282 Identities=18% Similarity=0.232 Sum_probs=209.1
Q ss_pred cceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 010871 178 GMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRV 257 (498)
Q Consensus 178 ~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~i 257 (498)
.++..+.||.++|+|+.|.. .|.++++|+.|..++||...+ ..+.....||.+.|+.++.+.++.+++++|.|..|++
T Consensus 181 k~ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et-~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMET-ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccc-hhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 45567899999999999999 999999999999999999888 8899999999999999999999999999999999999
Q ss_pred EECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE-----eecCCCeEEEEEcCCCCEEEE
Q 010871 258 WELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK-----LVVDSEVTSMDHDHTGQLLFC 331 (498)
Q Consensus 258 wd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-----~~~~~~i~~l~~~~~~~~l~~ 331 (498)
|.+.++..+..+.+|. .|++++|+|-- +.+.||++++||.+-.-.+.. +.....+.++.|...+..+++
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 9999999999999985 78899999943 667999999999871111111 123456777888888889999
Q ss_pred EcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEee
Q 010871 332 GDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSL 411 (498)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~ 411 (498)
|+.++.-..|.+...... ...+.-+.... ....+.+++-.+..+.+|++..+..... ..
T Consensus 334 gs~d~ea~n~e~~~l~~~-------------~~~lif~t~ss----d~~~~~~~ar~~~~~~vwnl~~g~l~H~----l~ 392 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWR-------------SNLLIFVTRSS----DLSSIVVTARNDHRLCVWNLYTGQLLHN----LM 392 (1113)
T ss_pred ccCCcccccchhhHhhhh-------------ccceEEEeccc----cccccceeeeeeeEeeeeecccchhhhh----hc
Confidence 999998887765422111 11111111110 1124566677788889999876532211 11
Q ss_pred ccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeee-cCCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 010871 412 KLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL-QGHRFPVVAVAWNHGENLLASSDLYGIVI 490 (498)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~ 490 (498)
.+......+ .++| -+.....+++.||.+.|||+..+. ++..+ .+ .+.+..-+|+++|..++....-|.++
T Consensus 393 ghsd~~yvL--d~Hp----fn~ri~msag~dgst~iwdi~eg~--pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~ 463 (1113)
T KOG0644|consen 393 GHSDEVYVL--DVHP----FNPRIAMSAGYDGSTIIWDIWEGI--PIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLY 463 (1113)
T ss_pred ccccceeee--eecC----CCcHhhhhccCCCceEeeecccCC--cceeeecc-cceeeccccCCCCceEecCCCCCceE
Confidence 122222222 4555 256777889999999999999864 33333 45 45677789999999998887779999
Q ss_pred EeecCC
Q 010871 491 VWKRAK 496 (498)
Q Consensus 491 iW~~~~ 496 (498)
|.....
T Consensus 464 i~g~gq 469 (1113)
T KOG0644|consen 464 ILGTGQ 469 (1113)
T ss_pred EeccCC
Confidence 886544
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.9e-16 Score=131.62 Aligned_cols=275 Identities=15% Similarity=0.222 Sum_probs=189.5
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCC---------CCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSD---------PPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~---------~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
.|.+-+++| .+++|++|..+|.|.+..+.+ +...+..+++|.++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 466778999 999999999999999999864 123455568999999999998 34777776 59999998
Q ss_pred CCCCcE------EEEEe--------cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcC
Q 010871 260 LTKGDC------IRVIY--------GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDH 324 (498)
Q Consensus 260 ~~~~~~------~~~~~--------~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~ 324 (498)
...... +.... .-..+.++...|..+.++.+| .|+.++-||+++|+...++ +|...|.++.--.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 764321 11111 113467888888776666666 8999999999999999999 5889999998856
Q ss_pred CCCEEEEEcCCCeEEEEEccCCccccccccc-cc-ccCCC-ccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccc
Q 010871 325 TGQLLFCGDAQGCIYSISMESHSGALSRSHR-HR-TTGKR-KCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEI 401 (498)
Q Consensus 325 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~-~~~~~-~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~ 401 (498)
....+++|++||++++||.++.+........ .. ....| ...|.+++ -+..++++|+ ...+.+|.++..
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala-------~~edWlvCGg-Gp~lslwhLrss- 237 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA-------VNEDWLVCGG-GPKLSLWHLRSS- 237 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe-------ccCceEEecC-CCceeEEeccCC-
Confidence 6667999999999999999876554332111 10 01112 22344443 4567777665 457999999865
Q ss_pred cceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCC-CCEE
Q 010871 402 QGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHG-ENLL 480 (498)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l 480 (498)
...+.+....+++.+. | ....+++++..+.|.-|.+.. ......+......++..|+.. -++|
T Consensus 238 ----e~t~vfpipa~v~~v~--F-------~~d~vl~~G~g~~v~~~~l~G---vl~a~ip~~s~~c~s~s~~~~p~k~~ 301 (325)
T KOG0649|consen 238 ----ESTCVFPIPARVHLVD--F-------VDDCVLIGGEGNHVQSYTLNG---VLQANIPVESTACYSASWQTSPIKFI 301 (325)
T ss_pred ----CceEEEecccceeEee--e-------ecceEEEeccccceeeeeecc---EEEEeccCCccceeeecccCCceEEE
Confidence 3344455555555443 2 467788888888899998874 233334444445566666533 3466
Q ss_pred EEEeCCCeEEEee
Q 010871 481 ASSDLYGIVIVWK 493 (498)
Q Consensus 481 ~s~~~Dg~i~iW~ 493 (498)
-.++....+.|+.
T Consensus 302 s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 302 SIAGFSNKLHILK 314 (325)
T ss_pred Eecccceeeeeee
Confidence 6677777787763
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=1.1e-16 Score=137.49 Aligned_cols=244 Identities=16% Similarity=0.297 Sum_probs=171.8
Q ss_pred cEEEEEEe--cCCCCEEEEEeC----CCcEEEEEcCCCC-ceeEE-eecCCCCeEEEEEccCC-----CEEEEEeCCCcE
Q 010871 189 AVTILKFG--HMSSDLLAYGAS----DGTLTVCTVSDPP-KVIKL-LNGHSKDVTDFDFSSNN-----QYIASSSMDKTV 255 (498)
Q Consensus 189 ~V~~v~~s--p~~~~~lasg~~----dg~i~iwd~~~~~-~~~~~-~~~h~~~V~~l~~s~~~-----~~l~s~s~dg~v 255 (498)
.+.++.|+ |+.+.+||.|+. .+.|.|-.+.... +.+.. --.|.-+++.+.|.|+. ++|+|++ | .+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-C-eE
Confidence 56788887 334568999974 4677777665422 22221 13589999999999976 3566554 3 69
Q ss_pred EEEECCCC--cE--EEEEe------cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE----EEEeecCCCeEEEE
Q 010871 256 RVWELTKG--DC--IRVIY------GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI----IKKLVVDSEVTSMD 321 (498)
Q Consensus 256 ~iwd~~~~--~~--~~~~~------~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~i~~l~ 321 (498)
|+|.+... +. ...+. ...+.++..|+..+.+++.+++-|-+..|||++++.. .+.+.|...|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 99998742 11 11111 1246789999999999999999999999999998733 22336899999999
Q ss_pred EcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 322 HDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 322 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
|...+. .|++.+.||.+++||++....... ||.-.
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTI------------------------------------------IYE~p-- 239 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTI------------------------------------------IYEDP-- 239 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceE------------------------------------------EecCC--
Confidence 988654 778888888888888864221110 11000
Q ss_pred ccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC-CcEEEEECCCCCccceeeecCCCCCeEEEEEcCC-CC
Q 010871 401 IQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED-SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHG-EN 478 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~ 478 (498)
.....-++.+|+. .|-+++|+-..| ..|.|.|++.+. .++..+++|.+.|++++|.|. ..
T Consensus 240 -------------~~~~pLlRLswnk----qDpnymATf~~dS~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~ 301 (364)
T KOG0290|consen 240 -------------SPSTPLLRLSWNK----QDPNYMATFAMDSNKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSS 301 (364)
T ss_pred -------------CCCCcceeeccCc----CCchHHhhhhcCCceEEEEEecCCC-cceehhhcCcccccceEecCCCCc
Confidence 0011123335554 467788876665 469999999874 578999999999999999986 46
Q ss_pred EEEEEeCCCeEEEeecCC
Q 010871 479 LLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 479 ~l~s~~~Dg~i~iW~~~~ 496 (498)
.|+|+|.|..+.+||+..
T Consensus 302 hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 302 HICTAGDDCQALIWDLQQ 319 (364)
T ss_pred eeeecCCcceEEEEeccc
Confidence 899999999999999875
No 183
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.7e-17 Score=145.11 Aligned_cols=256 Identities=16% Similarity=0.228 Sum_probs=185.5
Q ss_pred eEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------CcEEEEEecC--CCeEEEEEEcCCCcEEEEEeCCC
Q 010871 224 IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK------GDCIRVIYGV--SSQLCIRFHPVNNNFLSVGNANK 295 (498)
Q Consensus 224 ~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~------~~~~~~~~~~--~~v~~i~~~~~~~~~l~~g~~dg 295 (498)
.+.+.+|.+.|.+|.|+.++++|++|+.|..+++|+++. .+.+.....+ +.+.|++|.. +..++++|..++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcc
Confidence 345668999999999999999999999999999999863 3555554433 5789999998 678999999999
Q ss_pred cEEEEEcCCCcEEEEeecCC---CeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEe
Q 010871 296 EITVFNFSTGRIIKKLVVDS---EVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYR 372 (498)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~~~---~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 372 (498)
+|...|+++.+.+..+.+.. .|..+..+|..+.|++.+.++.|.+||.+........... ........++.|+
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~----AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP----ANSGKNFYTAEFH 203 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee----cCCCccceeeeec
Confidence 99999999999999997654 8999999999999999999999999999865533222211 2233345556665
Q ss_pred EeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCC-ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 373 SFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAP-RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 373 ~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
+ ....+|++.+..+-+-+||.+..............+.. ....+...|+| +|..|++--....-.+||+.
T Consensus 204 P----~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-----~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 204 P----ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-----SGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred C----CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-----CCCeehhhhccCCCEEeeee
Confidence 3 23467888889999999999865443322222222222 11223345555 89888877666666788887
Q ss_pred CCCccceeeecCCC-------CCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 452 KPKHSCVNKLQGHR-------FPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 452 ~~~~~~~~~~~~h~-------~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+... .+..+. |. ..+.+++|..|. .+++|+.+=.|++|.+..
T Consensus 275 S~R~-~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 275 SQRC-FVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred cccc-eeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCC
Confidence 6431 233332 22 346778887554 499999999999999864
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=4.5e-16 Score=135.67 Aligned_cols=207 Identities=19% Similarity=0.248 Sum_probs=160.6
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC--ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-CC
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP--KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT-KG 263 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~-~~ 263 (498)
..+|+|.+|++ ++..+|.+-....|.||...... +..++++.|...|++++|+|..+.|++|+.|..-.+|... .+
T Consensus 10 ~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 57899999999 99999999999999999987633 5788899999999999999999999999999999999984 44
Q ss_pred c---EEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE-----eecCCCeEEEEEcCCCCEEEEEcCC
Q 010871 264 D---CIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK-----LVVDSEVTSMDHDHTGQLLFCGDAQ 335 (498)
Q Consensus 264 ~---~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-----~~~~~~i~~l~~~~~~~~l~~~~~d 335 (498)
+ .+..+.......++.|+| .++.+++|+....|.||-++...--.. ..+.+.|++++|+|++-+|++|+.|
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred eeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 3 233345567889999999 568999999999999998876553322 2356789999999999999999999
Q ss_pred CeEEEEEccCCccccc-------ccccc----cccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 336 GCIYSISMESHSGALS-------RSHRH----RTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~-------~~~~~----~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
+..++|..-....... ...+. .......+.+..+.|. |+|..|+-.+.|..+.+-|....
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-----~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-----PSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-----CCCCEeeEecCCCceEEeecCCC
Confidence 9999987421111000 00000 0112334556666655 99999999999999999987754
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=2.5e-15 Score=143.62 Aligned_cols=273 Identities=14% Similarity=0.174 Sum_probs=170.0
Q ss_pred cccEEEEEEecCCCCEEEEEe-CCCcEEEEEcCCCCce--eEEeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCC
Q 010871 187 KAAVTILKFGHMSSDLLAYGA-SDGTLTVCTVSDPPKV--IKLLNGHSKDVTDFDFSSNNQYIASSSM-DKTVRVWELTK 262 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~-~dg~i~iwd~~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~~ 262 (498)
.+....++++| ++++|++++ .++.|.+|++...+.. ..... ..+....++|+|++++|++++. ++.|.+|++++
T Consensus 34 ~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 34 PGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 35577899999 888876664 5788999999742332 22222 3345678999999999888765 78999999974
Q ss_pred -C---cEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEE-------EeecCCCeEEEEEcCCCCEEEE
Q 010871 263 -G---DCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIK-------KLVVDSEVTSMDHDHTGQLLFC 331 (498)
Q Consensus 263 -~---~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~-------~~~~~~~i~~l~~~~~~~~l~~ 331 (498)
+ +.+..+.+...+..++++|++..++++...++.|.+||+.+...+. ..........++|+|+++++++
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv 191 (330)
T PRK11028 112 DGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYC 191 (330)
T ss_pred CCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEE
Confidence 3 2333344445567888999776666777778999999997643221 1223455678999999999988
Q ss_pred EcC-CCeEEEEEccCCcccccccccccccCCC-ccceeeEEEeEeeEcCCCcEEEEEEc-CCcEEEEEccccccceeeEe
Q 010871 332 GDA-QGCIYSISMESHSGALSRSHRHRTTGKR-KCPVTTVQYRSFSLLAGGPVLLTCTQ-DGNLSFFSVALEIQGYLTFR 408 (498)
Q Consensus 332 ~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~s~~~~~l~t~s~-dg~i~iwd~~~~~~~~~~~~ 408 (498)
+.. ++.|.+|+++...+.............. ..+-.. ..+.++|++++++++.. ++.|.+|++..... .....
T Consensus 192 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-~~~~~ 267 (330)
T PRK11028 192 VNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA---ADIHITPDGRHLYACDRTASLISVFSVSEDGS-VLSFE 267 (330)
T ss_pred EecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc---eeEEECCCCCEEEEecCCCCeEEEEEEeCCCC-eEEEe
Confidence 876 8999999997533322111111000000 011010 12344599999998854 78999999864321 11111
Q ss_pred EeeccCCceeeeEEEEeeeeeccCCCEEEEEeC-CCcEEEEECCC--CCccceeeecCCCCCeEEEEE
Q 010871 409 CSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE-DSNVYFYDLAK--PKHSCVNKLQGHRFPVVAVAW 473 (498)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-dg~I~iwd~~~--~~~~~~~~~~~h~~~V~~l~~ 473 (498)
....... ....+.++| +|++|+++.. +++|.+|++.. +....+..+.. .....+++|
T Consensus 268 ~~~~~~~--~p~~~~~~~-----dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~-g~~P~~~~~ 327 (330)
T PRK11028 268 GHQPTET--QPRGFNIDH-----SGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV-GQGPMWVSV 327 (330)
T ss_pred EEEeccc--cCCceEECC-----CCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc-CCCceEEEE
Confidence 1111111 112234554 9999998776 88999998853 33333333333 334455554
No 186
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=1.8e-16 Score=141.75 Aligned_cols=256 Identities=18% Similarity=0.312 Sum_probs=170.3
Q ss_pred CCCEEEEE---eCCCcEEEEEcCCCCce---eEEeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCC-------c
Q 010871 199 SSDLLAYG---ASDGTLTVCTVSDPPKV---IKLLNGHSKDVTDFDFSS-NNQYIASSSMDKTVRVWELTKG-------D 264 (498)
Q Consensus 199 ~~~~lasg---~~dg~i~iwd~~~~~~~---~~~~~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~-------~ 264 (498)
+..+||.. +..|...|.-+...++. .-.+.||+++|..++|+| +...|+|||.|.+|.||.+..+ +
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 34555542 33344555444432322 234678999999999999 4568999999999999998754 3
Q ss_pred EEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEc
Q 010871 265 CIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISM 343 (498)
Q Consensus 265 ~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~ 343 (498)
.+..+.+|. .|-.+.|+|.-.+.|++++.|.+|.+||+.+|+.+..+.|...|.+++|+.+|.+|++.+.|..|++||.
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP 202 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcC
Confidence 566777885 6778999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCcccccccccccccCCCccc-eeeEEEeEeeEcCCCcEEEEEE---cCCcEEEEEccccccceeeEeEeeccCCceee
Q 010871 344 ESHSGALSRSHRHRTTGKRKCP-VTTVQYRSFSLLAGGPVLLTCT---QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHS 419 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~s~~~~~l~t~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 419 (498)
+..+..... ..|.+. -..+-|. .++..+-||. .+.++.+||...-..+. ... .+... ..
T Consensus 203 r~~~~v~e~-------~~heG~k~~Raifl-----~~g~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~---elDtS-nG 265 (472)
T KOG0303|consen 203 RRGTVVSEG-------VAHEGAKPARAIFL-----ASGKIFTTGFSRMSERQIALWDPNNLEEPI-ALQ---ELDTS-NG 265 (472)
T ss_pred CCCcEeeec-------ccccCCCcceeEEe-----ccCceeeeccccccccceeccCcccccCcc-eeE---EeccC-Cc
Confidence 765433221 223321 1122232 6777554543 47789999976433221 111 11111 11
Q ss_pred eEEEEeeeeeccCCCEE-EEEeCCCcEEEEECCCCC--ccceeeecCCCCCeEEEEEcCC
Q 010871 420 IRASFCPLLSLEKGEYI-VAGSEDSNVYFYDLAKPK--HSCVNKLQGHRFPVVAVAWNHG 476 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~l-~~gs~dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~sp~ 476 (498)
..-|... +|...+ ++|-.|+.|+.|.+.+.. ...+.+++ ...+=..+.|-|.
T Consensus 266 ---vl~PFyD-~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPK 320 (472)
T KOG0303|consen 266 ---VLLPFYD-PDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPK 320 (472)
T ss_pred ---eEEeeec-CCCCEEEEEecCCcceEEEEecCCCceeEEecccc-cCCcccccccccc
Confidence 1122211 255544 566779999999998754 11122222 2234455555553
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5e-17 Score=142.71 Aligned_cols=264 Identities=15% Similarity=0.179 Sum_probs=170.9
Q ss_pred eeeecccccEEEEEEecC-CCCEEEEEeCCCcEEEEEcCCCCcee-EEeecCC-CCeEEEEEccCCCEEEEEeC----CC
Q 010871 181 CIFDQCKAAVTILKFGHM-SSDLLAYGASDGTLTVCTVSDPPKVI-KLLNGHS-KDVTDFDFSSNNQYIASSSM----DK 253 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~-~~~~lasg~~dg~i~iwd~~~~~~~~-~~~~~h~-~~V~~l~~s~~~~~l~s~s~----dg 253 (498)
..|++|...++.++|... ....+.+|+.||+|++||++...+.. ..+.+|. .+..|++..-.++.+++|.. +-
T Consensus 64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A 143 (376)
T KOG1188|consen 64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDA 143 (376)
T ss_pred heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCce
Confidence 467888999999999864 46789999999999999999754433 3445565 56777777767778877753 56
Q ss_pred cEEEEECCCCcE-EEEEe--cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc----EEEEeecCCCeEEEEEcCCC
Q 010871 254 TVRVWELTKGDC-IRVIY--GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR----IIKKLVVDSEVTSMDHDHTG 326 (498)
Q Consensus 254 ~v~iwd~~~~~~-~~~~~--~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~~~~i~~l~~~~~~ 326 (498)
.|.+||++..+. ++.+. ++..|+++.|+|.+.++|++|+.||.|.+||+.... ++.++.+...|.++.|..++
T Consensus 144 ~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 144 SVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred EEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 799999998766 55543 446899999999999999999999999999997543 44555788899999999877
Q ss_pred -CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEc-CCCcEEEEEEc-CCcEEEEEccccccc
Q 010871 327 -QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLL-AGGPVLLTCTQ-DGNLSFFSVALEIQG 403 (498)
Q Consensus 327 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s-~~~~~l~t~s~-dg~i~iwd~~~~~~~ 403 (498)
+.|.+-+..+...+|+++..........+... .........+.+.--..+ .+...++.++. -+...++-+.....+
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~-~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~ 302 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVS-ADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSG 302 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccch-hhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccc
Confidence 46888899999999999876543322211000 000000001110000000 23444554444 566666654421111
Q ss_pred eeeEeEeeccCC-ceeeeEE-EEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 404 YLTFRCSLKLAP-RVHSIRA-SFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 404 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
... .....+.+ +...++. .|. ..+.++++|++||.+.+|...
T Consensus 303 ~~~-~~~a~l~g~~~eiVR~i~~~-----~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 303 SLL-TEPAILQGGHEEIVRDILFD-----VKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccc-CccccccCCcHHHHHHHhhh-----cccceeeccCCCceEEEEecC
Confidence 000 00011111 1111111 222 378899999999999999964
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=2.7e-16 Score=153.93 Aligned_cols=247 Identities=17% Similarity=0.173 Sum_probs=175.0
Q ss_pred ccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCce-e----EEeecCCCCeEEEEEccCC--CEEEEEeCCCcEEEE
Q 010871 186 CKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV-I----KLLNGHSKDVTDFDFSSNN--QYIASSSMDKTVRVW 258 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~-~----~~~~~h~~~V~~l~~s~~~--~~l~s~s~dg~v~iw 258 (498)
....|+|++|+|.+..+||.|..+|.|.+||+...... . .....|..+|+.+.|..+- .-++++|.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 36789999999999999999999999999999874431 1 2234699999999997754 449999999999999
Q ss_pred ECCCCcE------EE-------EEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE--------E-EEeecCCC
Q 010871 259 ELTKGDC------IR-------VIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI--------I-KKLVVDSE 316 (498)
Q Consensus 259 d~~~~~~------~~-------~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--------~-~~~~~~~~ 316 (498)
+++.-.. .. .......+.++.|.+.+.+.+++|+.+|.|..-+....+. + ....|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8774322 11 1122346789999999999999999999998744332221 1 11247899
Q ss_pred eEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCC-CcEEEEEEcCCcEEEE
Q 010871 317 VTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG-GPVLLTCTQDGNLSFF 395 (498)
Q Consensus 317 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~-~~~l~t~s~dg~i~iw 395 (498)
|.++.++|-+..++..+.|..+++|........+.. ...+...+++++|+ |. ...|+++..||.|.+|
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~------~~~~~~~v~~vaWS-----ptrpavF~~~d~~G~l~iW 469 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS------LDSSPDYVTDVAWS-----PTRPAVFATVDGDGNLDIW 469 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchh------hhhccceeeeeEEc-----CcCceEEEEEcCCCceehh
Confidence 999999998876665555999999987643333222 23445558888887 44 4577888889999999
Q ss_pred EccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 396 SVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 396 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
|+.....+..... ... ...+. -+.++++|+.|++|...|.+++|++..
T Consensus 470 DLl~~~~~Pv~s~---~~~--~~~l~----~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 470 DLLQDDEEPVLSQ---KVC--SPALT----RVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhhccccCCcccc---ccc--ccccc----eeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9985433221111 111 11111 122224799999999999999999964
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=7.5e-17 Score=152.93 Aligned_cols=238 Identities=17% Similarity=0.256 Sum_probs=171.6
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEe-ecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLL-NGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
...++||++.|+||+|+. +|+.+|+|+.|..|.||...-.+ .+ ..|.+.|.|+.|+|-...|+|++-. ..-+|
T Consensus 46 lqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG----~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglW 119 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEG----ILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLW 119 (1081)
T ss_pred ccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccc----eeeeccCCeeeEeecCchHHHhhhcchh-hcccc
Confidence 446899999999999999 99999999999999999865422 22 2599999999999999999999865 47789
Q ss_pred ECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe----ecCCCeEEEEEcCCC-----CEE
Q 010871 259 ELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL----VVDSEVTSMDHDHTG-----QLL 329 (498)
Q Consensus 259 d~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~~~~i~~l~~~~~~-----~~l 329 (498)
..+... +...+....+.+++|.. ++.+++.|-.+|+|.+-+-. ++....+ +..++|++++|+|.. ..+
T Consensus 120 S~~qK~-V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~ 196 (1081)
T KOG1538|consen 120 SPEQKS-VSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDIL 196 (1081)
T ss_pred Chhhhh-HHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceE
Confidence 866432 33333445677899988 55899999999999998754 4333333 256789999999964 478
Q ss_pred EEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeE
Q 010871 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRC 409 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 409 (498)
++.+...++.+|.+....-...+ ...-.-.|+.+. ++|.+++.|+.|+.+.+|-...- ....
T Consensus 197 aV~DW~qTLSFy~LsG~~Igk~r--------~L~FdP~CisYf-----~NGEy~LiGGsdk~L~~fTR~Gv-----rLGT 258 (1081)
T KOG1538|consen 197 AVADWGQTLSFYQLSGKQIGKDR--------ALNFDPCCISYF-----TNGEYILLGGSDKQLSLFTRDGV-----RLGT 258 (1081)
T ss_pred EEEeccceeEEEEecceeecccc--------cCCCCchhheec-----cCCcEEEEccCCCceEEEeecCe-----EEee
Confidence 88888888888887643211111 111122344443 99999999999999999975421 1111
Q ss_pred eeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 410 SLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
.......+..+ ... |++++++.|..||+|..|++.
T Consensus 259 vg~~D~WIWtV--~~~-----PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 259 VGEQDSWIWTV--QAK-----PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccccceeEEEE--EEc-----cCCceEEEEEccCeeehhhhH
Confidence 11122222222 333 599999999999999999874
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=6e-17 Score=151.12 Aligned_cols=240 Identities=15% Similarity=0.139 Sum_probs=176.6
Q ss_pred CCCCCCceeeeeecCCCCCCCccCCCCCcc--eeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCC---
Q 010871 145 GNLASSHRTSFSSTASDSDQPRRQGPEPAY--SFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD--- 219 (498)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~--- 219 (498)
...+......+....+..+.+|.+...+.- .-+..+..|.+|.++|.|+++.+ .+..+.+|+.||+|+.|++..
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCC
Confidence 445556667777888888888887221111 11234557899999999999999 999999999999999996542
Q ss_pred ------CCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEE---ecCCCeEEEEEEcCCCcEEEE
Q 010871 220 ------PPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVI---YGVSSQLCIRFHPVNNNFLSV 290 (498)
Q Consensus 220 ------~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~ 290 (498)
+......+.||.+.|+.+++++....|++++.||+|++|+...... .++ ..+.-...+.+-.....+.++
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~ 457 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLA 457 (577)
T ss_pred cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhh
Confidence 1245567889999999999999999999999999999999876665 333 234455677776544344444
Q ss_pred EeCCCcEEEEEcCCCcEEEEee--------cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCC
Q 010871 291 GNANKEITVFNFSTGRIIKKLV--------VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKR 362 (498)
Q Consensus 291 g~~dg~i~iwd~~~~~~~~~~~--------~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (498)
...-+.--++++.....+..+. ....+..+.++|.+.+.+++..++.|+++|......... ...|
T Consensus 458 s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s-------~~a~ 530 (577)
T KOG0642|consen 458 SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS-------MVAH 530 (577)
T ss_pred hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh-------eeec
Confidence 4344444455555555555553 124577888999999999999999999998754332211 2566
Q ss_pred ccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 363 KCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 363 ~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
...++++.+. |+|.+|++++.|+.+++|.+.
T Consensus 531 ~~svtslai~-----~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 531 KDSVTSLAID-----PNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred cceecceeec-----CCCceEEeecCCceeehhhcc
Confidence 6777777766 999999999999999999885
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=4.7e-16 Score=153.22 Aligned_cols=238 Identities=16% Similarity=0.127 Sum_probs=161.5
Q ss_pred CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCC
Q 010871 209 DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD---KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNN 285 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~ 285 (498)
+..|.|||... ...+.+..|...+.+..|+|||+.|+.++.+ ..|.+||+.+++..............+|+|++.
T Consensus 183 ~~~i~i~d~dg--~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDG--FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCC--CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence 57899999875 3355677788899999999999999987754 369999999886433222222334689999776
Q ss_pred cEEEEEeCCCcEEEE--EcCCCcEEEEeecCCCeEEEEEcCCCCEEEEE-cCCCeEEEEEccCCcccccccccccccCCC
Q 010871 286 NFLSVGNANKEITVF--NFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCG-DAQGCIYSISMESHSGALSRSHRHRTTGKR 362 (498)
Q Consensus 286 ~~l~~g~~dg~i~iw--d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (498)
.++++...+|.+.|| |+.+++......+...+....|+|+|+.|+.+ ..+|...+|+++......... .+
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-------~~ 333 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-------GG 333 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-------cC
Confidence 666666678865554 66666654444556678889999999976654 467888888876543322111 11
Q ss_pred ccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC
Q 010871 363 KCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED 442 (498)
Q Consensus 363 ~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d 442 (498)
.. .. ..++|+|+.|+..+.++ +.+||+.++...... .. .......|+| +|++|+.++.+
T Consensus 334 ~~--~~-----~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt----~~----~~~~~~~~sP-----dG~~i~~~s~~ 392 (429)
T PRK01742 334 RG--YS-----AQISADGKTLVMINGDN-VVKQDLTSGSTEVLS----ST----FLDESPSISP-----NGIMIIYSSTQ 392 (429)
T ss_pred CC--CC-----ccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec----CC----CCCCCceECC-----CCCEEEEEEcC
Confidence 11 12 23459999998888765 556898754321110 00 1112235555 99999999999
Q ss_pred CcEEEEECCCCCccceeeecCCCCCeEEEEEcCC
Q 010871 443 SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHG 476 (498)
Q Consensus 443 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~ 476 (498)
+.+.+|++.......+..+.+|.+.+...+|+|-
T Consensus 393 g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 9888888654334567888888888999999984
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=2.9e-14 Score=126.88 Aligned_cols=280 Identities=17% Similarity=0.243 Sum_probs=192.5
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCC--cEEEEECCCCc
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDK--TVRVWELTKGD 264 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg--~v~iwd~~~~~ 264 (498)
...+..+.|+. +...|..|+.|| .++|......+ ..........|.-+-|+. .++|..+.+. .+++.++..+.
T Consensus 5 ~~ti~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k-~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEK-CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred Ccceeeeeecc-ceeEEEccCCCc-eeEEecCchHH-hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc
Confidence 34567777887 888999999999 68888876333 222222334455566654 4666655543 49999999999
Q ss_pred EEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee----cCCCeEEEEEcCCCCEEEEE--cCCCeE
Q 010871 265 CIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV----VDSEVTSMDHDHTGQLLFCG--DAQGCI 338 (498)
Q Consensus 265 ~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~--~~dg~i 338 (498)
.+..+.....+.++.++. +.|+++-. ..|+|||+++.+.+.++. +...+.++.++..+.+++.- ...|.|
T Consensus 80 ~ICe~~fpt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred eEEEEecCCceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 999999999999999965 34555533 449999999999999884 44557777777777788753 357899
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCc-EEEEEccccccceeeEeEeeccCCce
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGN-LSFFSVALEIQGYLTFRCSLKLAPRV 417 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~ 417 (498)
.+||........ ....|++++.+++|+ ++|.+|+|++..|+ ||||.+..+..-+ .+....
T Consensus 156 ~l~d~~nl~~v~-------~I~aH~~~lAalafs-----~~G~llATASeKGTVIRVf~v~~G~kl~-------eFRRG~ 216 (391)
T KOG2110|consen 156 VLFDTINLQPVN-------TINAHKGPLAALAFS-----PDGTLLATASEKGTVIRVFSVPEGQKLY-------EFRRGT 216 (391)
T ss_pred EEEEcccceeee-------EEEecCCceeEEEEC-----CCCCEEEEeccCceEEEEEEcCCccEee-------eeeCCc
Confidence 999986543322 246899999999888 99999999999997 7899997653321 122222
Q ss_pred eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccc-------------------------e----------eeec
Q 010871 418 HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSC-------------------------V----------NKLQ 462 (498)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~-------------------------~----------~~~~ 462 (498)
. .+....+++++++.+|++.+..++|+||.+....... + ...+
T Consensus 217 ~--~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~ 294 (391)
T KOG2110|consen 217 Y--PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAK 294 (391)
T ss_pred e--eeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEE
Confidence 2 2234444555599999999999999999986421000 0 0001
Q ss_pred CCCC---CeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 463 GHRF---PVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 463 ~h~~---~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
...+ .+..+.-.+...++..++.||.++.|.+.-
T Consensus 295 l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 295 LPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred ccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 1111 222232234677888999999999998763
No 193
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.72 E-value=1.8e-16 Score=149.65 Aligned_cols=235 Identities=14% Similarity=0.289 Sum_probs=165.4
Q ss_pred CCCEEEE--EeCCCcEEEEEcCCCCceeEE-eec--CCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCC-------cE
Q 010871 199 SSDLLAY--GASDGTLTVCTVSDPPKVIKL-LNG--HSKDVTDFDFSS-NNQYIASSSMDKTVRVWELTKG-------DC 265 (498)
Q Consensus 199 ~~~~las--g~~dg~i~iwd~~~~~~~~~~-~~~--h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~-------~~ 265 (498)
+..++|+ .+..|.|-||++..++++--. +.+ ....|+.+.|.| |...|+.++.||.|++|.+..+ ..
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence 4455554 456799999999986654321 111 456799999999 6679999999999999998754 23
Q ss_pred EEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEc
Q 010871 266 IRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISM 343 (498)
Q Consensus 266 ~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~ 343 (498)
...+..| ..+..+.|+|--...|++++.|.+|++||+++++....+ .|...|..++|+|+|+.+++.+.||.|++|.-
T Consensus 670 e~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 670 EKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred ceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 4556666 478899999998899999999999999999999887777 69999999999999999999999999999987
Q ss_pred cCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC----cEEEEEccccccceeeEeEeeccCCceee
Q 010871 344 ESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG----NLSFFSVALEIQGYLTFRCSLKLAPRVHS 419 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 419 (498)
+.....+...... ....-..+.|. -+|+++++.+.|. .|.+||...-....+. ...
T Consensus 750 rs~e~pv~Eg~gp-----vgtRgARi~wa-----cdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~----------t~~ 809 (1012)
T KOG1445|consen 750 RSREQPVYEGKGP-----VGTRGARILWA-----CDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLY----------TQV 809 (1012)
T ss_pred CCCCCccccCCCC-----ccCcceeEEEE-----ecCcEEEEecccccchhhhhhhhhhhccCCcce----------eee
Confidence 7655443221110 01111223333 6888888877664 5888887642211110 011
Q ss_pred eEEEEeeee---eccCCCEEEEEeCCCcEEEEECCCC
Q 010871 420 IRASFCPLL---SLEKGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 420 ~~~~~~~~~---~~~~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
+..+-+++. .-..+-++++|-.|..|++|.+...
T Consensus 810 lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 810 LDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred ecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 111111111 1134567889999999999998753
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.5e-16 Score=143.74 Aligned_cols=195 Identities=22% Similarity=0.266 Sum_probs=150.8
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 010871 191 TILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIY 270 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 270 (498)
.+++|++ +|..|++|+.||++|||+..+ ...+.....|.+.|.+|.|+|||++|++.+.| ..+||++++|.++....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPS-MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCc-chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 7899999 999999999999999999876 56666677899999999999999999999999 89999999997776665
Q ss_pred cCC---CeEEEEEEcCC---CcEEE-EEeCCCcEEEEEcCCCcE---E---EEeecCCCeEEEEEcCCCCEEEEEcCCCe
Q 010871 271 GVS---SQLCIRFHPVN---NNFLS-VGNANKEITVFNFSTGRI---I---KKLVVDSEVTSMDHDHTGQLLFCGDAQGC 337 (498)
Q Consensus 271 ~~~---~v~~i~~~~~~---~~~l~-~g~~dg~i~iwd~~~~~~---~---~~~~~~~~i~~l~~~~~~~~l~~~~~dg~ 337 (498)
..+ ....+.|..++ .-+++ .....+.|+.||+..... + +.+.....|.+++++++|++++.|+.+|.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 322 33467777654 22233 233446677776643221 1 11124568999999999999999999999
Q ss_pred EEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 338 IYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
|.+++....+..... ...|...|+.+.|. |+.+++++.+.|..+.+..+..
T Consensus 305 Vai~~~~~lq~~~~v------k~aH~~~VT~ltF~-----Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYV------KEAHLGFVTGLTFS-----PDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEee------hhhheeeeeeEEEc-----CCcCcccccccCCceeEEEEee
Confidence 999987654332221 26788889988887 9999999999999999988763
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=1.2e-15 Score=131.25 Aligned_cols=240 Identities=13% Similarity=0.193 Sum_probs=170.9
Q ss_pred cccccEEEEEEecCC----CCEEEEEeCCCcEEEEEcCCCCc---eeEEe-----ecCCCCeEEEEEcc-CCCEEEEEeC
Q 010871 185 QCKAAVTILKFGHMS----SDLLAYGASDGTLTVCTVSDPPK---VIKLL-----NGHSKDVTDFDFSS-NNQYIASSSM 251 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~----~~~lasg~~dg~i~iwd~~~~~~---~~~~~-----~~h~~~V~~l~~s~-~~~~l~s~s~ 251 (498)
.|.-+++.+.|.|+. .++|||.+ ..+++|.+..... +...+ ..+..++++..|+. +-++|.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 467789999999943 24777765 3599999874211 11112 24678999999986 5578999999
Q ss_pred CCcEEEEECCCCcE----EEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe---ec-CCCeEEEEEc
Q 010871 252 DKTVRVWELTKGDC----IRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL---VV-DSEVTSMDHD 323 (498)
Q Consensus 252 dg~v~iwd~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~-~~~i~~l~~~ 323 (498)
|-+..|||++++.. .+.+.+...|..++|...+..++++.+.||.|++||++..+.-..+ .. ..+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 99999999998732 3334455689999999988899999999999999999876544333 22 5678889998
Q ss_pred CCCC-EEEEEcC-CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccc
Q 010871 324 HTGQ-LLFCGDA-QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEI 401 (498)
Q Consensus 324 ~~~~-~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~ 401 (498)
+... ++++-.. ...|.+.|++....... .+..|...|+.++|.+ .....|++++.|..+.+||+....
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva------~L~~H~a~VNgIaWaP----hS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVA------RLRNHQASVNGIAWAP----HSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCccee------hhhcCcccccceEecC----CCCceeeecCCcceEEEEeccccc
Confidence 8654 5665444 45688999986554433 3488999999999985 457889999999999999998643
Q ss_pred c-ceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC
Q 010871 402 Q-GYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED 442 (498)
Q Consensus 402 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d 442 (498)
. ............+.++.+ .|++ ..+.+|+++...
T Consensus 322 ~~~~~dPilay~a~~EVNqi--~Ws~----~~~Dwiai~~~k 357 (364)
T KOG0290|consen 322 RENGEDPILAYTAGGEVNQI--QWSS----SQPDWIAICFGK 357 (364)
T ss_pred ccCCCCchhhhhccceeeee--eecc----cCCCEEEEEecC
Confidence 3 222222222334444444 6665 367788877654
No 196
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=2.4e-17 Score=160.01 Aligned_cols=244 Identities=19% Similarity=0.257 Sum_probs=185.3
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEE
Q 010871 223 VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFN 301 (498)
Q Consensus 223 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd 301 (498)
.++.+.+|..+|+|+.|...|.++++|+.|..|+||..+++.++....+|+ .+..++.+. +..++++++.|..|++|.
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEe
Confidence 345667999999999999999999999999999999999999999999996 667777766 567889999999999999
Q ss_pred cCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC
Q 010871 302 FSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG 380 (498)
Q Consensus 302 ~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~ 380 (498)
+.++.++..+ +|.+.|++++|+|-. +.+.||++++||.+-.......... .......+.++.+. ..+
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~---~~~~~~~~~s~~~~-----~~~ 328 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPL---KFTEKDLVDSILFE-----NNG 328 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCC---Ccccccceeeeecc-----ccc
Confidence 9999999888 799999999999964 7788999999998732222211111 12223445555554 678
Q ss_pred cEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceee
Q 010871 381 PVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNK 460 (498)
Q Consensus 381 ~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~ 460 (498)
..++|++.|+.-..|.+....- ......|..-.. ....+.+++-.+-.+.+|++.++. ..+.
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~---------------~~~~lif~t~ss-d~~~~~~~ar~~~~~~vwnl~~g~--l~H~ 390 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAW---------------RSNLLIFVTRSS-DLSSIVVTARNDHRLCVWNLYTGQ--LLHN 390 (1113)
T ss_pred cccccccCCcccccchhhHhhh---------------hccceEEEeccc-cccccceeeeeeeEeeeeecccch--hhhh
Confidence 8899999999988887652110 000011111000 122456666677889999999954 6788
Q ss_pred ecCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEeecCCC
Q 010871 461 LQGHRFPVVAVAWNHGEN-LLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 461 ~~~h~~~V~~l~~sp~~~-~l~s~~~Dg~i~iW~~~~~ 497 (498)
+.+|...+..+.+||-.. ...+++.||...|||+-.+
T Consensus 391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred hcccccceeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence 899999999999999654 5568999999999998765
No 197
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.69 E-value=2.4e-15 Score=129.29 Aligned_cols=211 Identities=16% Similarity=0.216 Sum_probs=160.5
Q ss_pred eeee-cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee-----cCCCCeEEEEEcc--CCCEEEEEeCC
Q 010871 181 CIFD-QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN-----GHSKDVTDFDFSS--NNQYIASSSMD 252 (498)
Q Consensus 181 ~~~~-~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~-----~h~~~V~~l~~s~--~~~~l~s~s~d 252 (498)
+.|+ .|-+.|.||.|.| +++.||+-. |..|.+|++....+.+..+. +|....++-+|+| +++.+++. .|
T Consensus 116 ~~Ldteavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d 192 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SD 192 (370)
T ss_pred hcCCHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CC
Confidence 3444 5667999999999 888888776 78899999997555344332 3677788999998 67777766 48
Q ss_pred CcEEEEECCCCcEEEEEec-C-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-cEEEEe-ecCCCeEEEEEcCCC-C
Q 010871 253 KTVRVWELTKGDCIRVIYG-V-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-RIIKKL-VVDSEVTSMDHDHTG-Q 327 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~~~~-~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~-~~~~~i~~l~~~~~~-~ 327 (498)
+++..||+++.++...+.. | ..+..+.|+|....+|++|+.||.|++||.+.. .++..+ .|...|+++.|+|.. +
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq 272 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ 272 (370)
T ss_pred CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce
Confidence 8999999999888777763 3 367899999988899999999999999999865 456666 588999999999975 5
Q ss_pred EEEEEcCCCeEEEEEccCCcccc----------------------cccccccccCCCccceeeEEEeEeeEcCCCcEEEE
Q 010871 328 LLFCGDAQGCIYSISMESHSGAL----------------------SRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT 385 (498)
Q Consensus 328 ~l~~~~~dg~i~i~d~~~~~~~~----------------------~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t 385 (498)
+|++|+.|..|.+|....-.... ...-....+..|...|.++.|+. .+.=.|++
T Consensus 273 LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs----adPWiFAS 348 (370)
T KOG1007|consen 273 LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS----ADPWIFAS 348 (370)
T ss_pred EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc----CCCeeEEE
Confidence 78899999999998654322110 00011123567889999999974 45556788
Q ss_pred EEcCCcEEEEEcc
Q 010871 386 CTQDGNLSFFSVA 398 (498)
Q Consensus 386 ~s~dg~i~iwd~~ 398 (498)
-+.||.+.|=.+.
T Consensus 349 LSYDGRviIs~V~ 361 (370)
T KOG1007|consen 349 LSYDGRVIISSVP 361 (370)
T ss_pred eccCceEEeecCC
Confidence 8999999887664
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=4.7e-15 Score=147.85 Aligned_cols=254 Identities=16% Similarity=0.212 Sum_probs=171.9
Q ss_pred cccEEEEEEec-CCCCEEEEEeCCCcEEEEEcCCC----CceeEEee---cC----CCCeEEEEEccCCCEEEEEeCCCc
Q 010871 187 KAAVTILKFGH-MSSDLLAYGASDGTLTVCTVSDP----PKVIKLLN---GH----SKDVTDFDFSSNNQYIASSSMDKT 254 (498)
Q Consensus 187 ~~~V~~v~~sp-~~~~~lasg~~dg~i~iwd~~~~----~~~~~~~~---~h----~~~V~~l~~s~~~~~l~s~s~dg~ 254 (498)
...|+.+.+-. ++..+|.+|+.||.|+||+--.. .+.+..+. ++ .+.=.-++|.....+|+++|.-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 34688888765 35569999999999999985432 23333332 21 122244678777778887777889
Q ss_pred EEEEECCCCcEEEEEecCC--CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE---EEEe-ecCCC--eEEEEEcCCC
Q 010871 255 VRVWELTKGDCIRVIYGVS--SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI---IKKL-VVDSE--VTSMDHDHTG 326 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~-~~~~~--i~~l~~~~~~ 326 (498)
|+|||.....++..+...+ .++++.-.-..++++++|..||.|++||.+.... +... .|... |..+.+.+.|
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 9999999988888776553 4566666555679999999999999999876533 3333 45555 9999998877
Q ss_pred C-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccccccee
Q 010871 327 Q-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYL 405 (498)
Q Consensus 327 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~ 405 (498)
- .|++|+.+|.|++||++......... ........+..+++..+ +....+++|+. +.|+||++........
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~--iv~~~~yGs~lTal~VH-----~hapiiAsGs~-q~ikIy~~~G~~l~~~ 1340 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLT--IVAHWEYGSALTALTVH-----EHAPIIASGSA-QLIKIYSLSGEQLNII 1340 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccccce--eeeccccCccceeeeec-----cCCCeeeecCc-ceEEEEecChhhhccc
Confidence 5 59999999999999998742211111 00001112247777776 88899999998 9999999986533222
Q ss_pred eEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCC
Q 010871 406 TFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
.....+.........+..|+| ..-++|+|+.|.+|.||....+
T Consensus 1341 k~n~~F~~q~~gs~scL~FHP-----~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1341 KYNPGFMGQRIGSVSCLAFHP-----HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccCcccccCcCCCcceeeecc-----hhHhhhhccCCceEEEeecCCc
Confidence 211111111111122334554 7888999999999999998764
No 199
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=1.7e-14 Score=146.06 Aligned_cols=263 Identities=16% Similarity=0.166 Sum_probs=172.7
Q ss_pred EEcCCCCceeEEeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCC-------cEEEEEe-cCCCeEEEEEEcCCC
Q 010871 215 CTVSDPPKVIKLLNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELTKG-------DCIRVIY-GVSSQLCIRFHPVNN 285 (498)
Q Consensus 215 wd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~~~-------~~~~~~~-~~~~v~~i~~~~~~~ 285 (498)
|... +..+..+..|...|..++.++.. .+++|||.||+|++|+...- +...++. ..+.+.++...+ ++
T Consensus 1034 W~p~--G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~ 1110 (1431)
T KOG1240|consen 1034 WNPR--GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NG 1110 (1431)
T ss_pred CCcc--ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CC
Confidence 6654 67888899999999999998765 89999999999999998632 2333333 445777888777 55
Q ss_pred cEEEEEeCCCcEEEEEcCCCcE-------EEEe--ecCCCeEEE-EEcC-CCC-EEEEEcCCCeEEEEEccCCccccccc
Q 010871 286 NFLSVGNANKEITVFNFSTGRI-------IKKL--VVDSEVTSM-DHDH-TGQ-LLFCGDAQGCIYSISMESHSGALSRS 353 (498)
Q Consensus 286 ~~l~~g~~dg~i~iwd~~~~~~-------~~~~--~~~~~i~~l-~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~ 353 (498)
..+++++.||.|.+.++..... .+.. ...+.+.++ ++.. .+. .++.+..-+.|..||++.........
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 7788889999999999876211 1111 122334333 3322 223 78888899999999997654433322
Q ss_pred ccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCC
Q 010871 354 HRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKG 433 (498)
Q Consensus 354 ~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (498)
. ....+.|+++... |.++++++|+..|.+.+||++.+ ...+...++..........+|.. +..
T Consensus 1191 ~-----~~~hG~vTSi~id-----p~~~WlviGts~G~l~lWDLRF~-----~~i~sw~~P~~~~i~~v~~~~~~--~~~ 1253 (1431)
T KOG1240|consen 1191 N-----QLRHGLVTSIVID-----PWCNWLVIGTSRGQLVLWDLRFR-----VPILSWEHPARAPIRHVWLCPTY--PQE 1253 (1431)
T ss_pred c-----CccccceeEEEec-----CCceEEEEecCCceEEEEEeecC-----ceeecccCcccCCcceEEeeccC--CCC
Confidence 2 3445667777766 99999999999999999999854 33444444444433333444321 233
Q ss_pred CEEEEEe--CCCcEEEEECCCCCccceeeec-----------------CCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 434 EYIVAGS--EDSNVYFYDLAKPKHSCVNKLQ-----------------GHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 434 ~~l~~gs--~dg~I~iwd~~~~~~~~~~~~~-----------------~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
...++++ ..+.|.+|++.++..+.+.... .+.-.....++...+.++.+|+.|+.|+.||.
T Consensus 1254 S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1254 SVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred ceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 4554444 4678999999986432221111 01111222333444568999999999999998
Q ss_pred CCC
Q 010871 495 AKT 497 (498)
Q Consensus 495 ~~~ 497 (498)
..+
T Consensus 1334 ~~p 1336 (1431)
T KOG1240|consen 1334 TRP 1336 (1431)
T ss_pred CCc
Confidence 754
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.4e-14 Score=129.61 Aligned_cols=200 Identities=17% Similarity=0.202 Sum_probs=136.1
Q ss_pred EEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccc
Q 010871 276 LCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSH 354 (498)
Q Consensus 276 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 354 (498)
.+++|+. ++..+++|+.||++|||+......+... .|...|.++.|+|+|+.|++-+.| ..++|+.+..........
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 5788888 4579999999999999996665555444 799999999999999999999999 999999876522111110
Q ss_pred cccccCCCccceeeEEEeEeeEcCCC---c--EEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeee
Q 010871 355 RHRTTGKRKCPVTTVQYRSFSLLAGG---P--VLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLS 429 (498)
Q Consensus 355 ~~~~~~~~~~~i~~~~~~~~~~s~~~---~--~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (498)
.........+.|. .++ . .++....-+.|+.|++...... ...+.. +.... .-..+.+.+
T Consensus 226 -----~~k~~~~~~cRF~-----~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~-~~~~~----~~siSsl~V 289 (398)
T KOG0771|consen 226 -----FSKDEMFSSCRFS-----VDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLR-KKIKR----FKSISSLAV 289 (398)
T ss_pred -----cccchhhhhceec-----ccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchh-hhhhc----cCcceeEEE
Confidence 1122223334443 333 2 2222334456777776532221 000000 00000 113455666
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCCccceee-ecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 430 LEKGEYIVAGSEDSNVYFYDLAKPKHSCVNK-LQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 430 ~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+.+|++++.|+.||.|-|++..+- +.+.. -+.|...|+.+.|+|+.+.+++.+.|....|..+.
T Consensus 290 S~dGkf~AlGT~dGsVai~~~~~l--q~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 290 SDDGKFLALGTMDGSVAIYDAKSL--QRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cCCCcEEEEeccCCcEEEEEecee--eeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 679999999999999999999983 34433 35799999999999999999999999988887765
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.5e-13 Score=115.47 Aligned_cols=194 Identities=12% Similarity=0.145 Sum_probs=140.9
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc-----eeEE--eecCC-----CCeEEEEEccCCCEEEEEe
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK-----VIKL--LNGHS-----KDVTDFDFSSNNQYIASSS 250 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~-----~~~~--~~~h~-----~~V~~l~~s~~~~~l~s~s 250 (498)
+.+|.++|+.++|. .++|++|+. |.|+-|......+ .... ..-|. ..|.+|...|..+-++.++
T Consensus 58 eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH---DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred ccccCCCeeeeeee---hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec
Confidence 47899999999997 367777764 9999998764221 1111 11122 4689999999877777778
Q ss_pred CCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec-----------CCCeEE
Q 010871 251 MDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV-----------DSEVTS 319 (498)
Q Consensus 251 ~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----------~~~i~~ 319 (498)
.|+.+..||+++|+..+++++|+.-............+++|+.||++++||.++++.+..+.. ...|.+
T Consensus 134 GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga 213 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA 213 (325)
T ss_pred CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE
Confidence 999999999999999999999986553333333456788999999999999999999988842 123455
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 320 MDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 320 l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
++. +..++++|+ .-.+.+|.++..+....... ..++..+.|. .+.+++++....+.-|.+.
T Consensus 214 la~--~edWlvCGg-Gp~lslwhLrsse~t~vfpi--------pa~v~~v~F~-------~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 214 LAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPI--------PARVHLVDFV-------DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred Eec--cCceEEecC-CCceeEEeccCCCceEEEec--------ccceeEeeee-------cceEEEeccccceeeeeec
Confidence 554 456777765 45789999987766554432 2335555553 6678888888888888775
No 202
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=8e-13 Score=126.17 Aligned_cols=283 Identities=14% Similarity=0.141 Sum_probs=174.0
Q ss_pred CCEE-EEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEE
Q 010871 200 SDLL-AYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCI 278 (498)
Q Consensus 200 ~~~l-asg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i 278 (498)
++++ ++-..+|.|.|.|..+ .+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++........+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t-~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGAT-NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCC-CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence 3444 4555689999999998 7888888765444455789999999999999999999999999999999998889999
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec--------CCCeEEEEEcCCCCEEEE-EcCCCeEEEEEccCCccc
Q 010871 279 RFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV--------DSEVTSMDHDHTGQLLFC-GDAQGCIYSISMESHSGA 349 (498)
Q Consensus 279 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--------~~~i~~l~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~ 349 (498)
++++++..++++....+.+.++|.++.+.++.+.. ...+..+..++....+++ .-+.+.|.+.|.......
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 99997766666667899999999999999988742 246778888888885554 455688988887544221
Q ss_pred ccccccccccCCCccceeeEEEeEeeEcCCCcEEEEE-EcCCcEEEEEccccccceeeEe---------EeeccCC----
Q 010871 350 LSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC-TQDGNLSFFSVALEIQGYLTFR---------CSLKLAP---- 415 (498)
Q Consensus 350 ~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~---- 415 (498)
..... ....... ...++|++++++++ ..+..|-++|............ ....+..
T Consensus 164 ~~~~i------~~g~~~~-----D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~v 232 (369)
T PF02239_consen 164 KVTTI------KVGRFPH-----DGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPV 232 (369)
T ss_dssp EEEEE------E--TTEE-----EEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEE
T ss_pred ceeee------ccccccc-----ccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceE
Confidence 11110 0111222 33445999987775 4566777887764321100000 0000000
Q ss_pred ----------------------------ceeeeEEEEee--eeeccCCCEEEEE----eCCCcEEEEECCCCCccceeee
Q 010871 416 ----------------------------RVHSIRASFCP--LLSLEKGEYIVAG----SEDSNVYFYDLAKPKHSCVNKL 461 (498)
Q Consensus 416 ----------------------------~~~~~~~~~~~--~~~~~~~~~l~~g----s~dg~I~iwd~~~~~~~~~~~~ 461 (498)
.+..+...-.+ +..+|+++++.+. ...+.|.++|..+. ..+..+
T Consensus 233 w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--~~~~~i 310 (369)
T PF02239_consen 233 WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--KVVKTI 310 (369)
T ss_dssp EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--EEEE-H
T ss_pred EeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc--ceeEEE
Confidence 00011110011 2334799999888 44589999999984 345555
Q ss_pred cCC-CCCeEEEEEcCCCCEEEEEeCC--CeEEEeecCC
Q 010871 462 QGH-RFPVVAVAWNHGENLLASSDLY--GIVIVWKRAK 496 (498)
Q Consensus 462 ~~h-~~~V~~l~~sp~~~~l~s~~~D--g~i~iW~~~~ 496 (498)
... ...+..+.|+++|+.+..+..+ |.|.|||..+
T Consensus 311 ~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 311 TPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp HHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred eccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 422 2358999999999976655544 4799999775
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2e-13 Score=134.47 Aligned_cols=282 Identities=16% Similarity=0.204 Sum_probs=186.1
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCC---CEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 192 ILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN---QYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 192 ~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~---~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
.-.|++ ++++++... +..|.||...+ +.++..+.+|..+++.+.+.|.. .++++++.||.|++||...+..+++
T Consensus 21 ~avfSn-D~k~l~~~~-~~~V~VyS~~T-g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 21 PAVFSN-DAKFLFLCT-GNFVKVYSTAT-GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred cccccc-CCcEEEEee-CCEEEEEecch-HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence 345787 777766555 46799999999 88899999999999999998854 4788999999999999999999999
Q ss_pred EecCCCeEEEEEEcCC---CcEEEEEeCCCcEEE-EEcCCCcEEEEe-------------ecCCCeEEEEEcCCCCEEEE
Q 010871 269 IYGVSSQLCIRFHPVN---NNFLSVGNANKEITV-FNFSTGRIIKKL-------------VVDSEVTSMDHDHTGQLLFC 331 (498)
Q Consensus 269 ~~~~~~v~~i~~~~~~---~~~l~~g~~dg~i~i-wd~~~~~~~~~~-------------~~~~~i~~l~~~~~~~~l~~ 331 (498)
+..+..+..+.+.|.- ...+..+..+..+.. ...........+ .....-.++.+++.|.+.+.
T Consensus 98 ~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i 177 (792)
T KOG1963|consen 98 FDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI 177 (792)
T ss_pred EecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE
Confidence 9888777666553321 112222222211111 111111111111 01112456777777775555
Q ss_pred EcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEee
Q 010871 332 GDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSL 411 (498)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~ 411 (498)
.. +..+++|.....+... ........|.-.+++..++ |.+++++++..||.|.+|.--..........+..
T Consensus 178 ~~-~~~~~~~~v~~~~~~~---~~~~~~~~Htf~~t~~~~s-----pn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 178 VH-MCKIHIYFVPKHTKHT---SSRDITVHHTFNITCVALS-----PNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred EE-eeeEEEEEecccceee---ccchhhhhhcccceeEEec-----cccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 44 5567888877654111 1112224455555655555 9999999999999999997543111111111111
Q ss_pred ccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 010871 412 KLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIV 491 (498)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~i 491 (498)
=+...+..+ .|++ +|.+|++|+..|.+.+|.+.+++.+ -+..-.++|..+.++||+.+.+....|..|.+
T Consensus 249 WH~~~V~~L--~fS~-----~G~~LlSGG~E~VLv~Wq~~T~~kq---fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 249 WHHDEVNSL--SFSS-----DGAYLLSGGREGVLVLWQLETGKKQ---FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred eccccccee--EEec-----CCceEeecccceEEEEEeecCCCcc---cccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 112222222 4554 9999999999999999999997743 34455789999999999999999999999998
Q ss_pred eecC
Q 010871 492 WKRA 495 (498)
Q Consensus 492 W~~~ 495 (498)
-...
T Consensus 319 i~~~ 322 (792)
T KOG1963|consen 319 IKAS 322 (792)
T ss_pred Eecc
Confidence 7653
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=7.9e-15 Score=136.13 Aligned_cols=210 Identities=15% Similarity=0.206 Sum_probs=155.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEE
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCI 278 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i 278 (498)
..+.|+.++.||.+.|.+-. ++..+....|.+.|.|-.|+|+|.-|++++.||.|++|.-...-.-...+...++.|+
T Consensus 74 ~~d~~~i~s~DGkf~il~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKS--ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred CcceEEEEcCCceEEEeccc--chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEE
Confidence 34578888899999988754 6777888999999999999999999999999999999985432222223445689999
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEEcCCCcE-EEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccccccccc
Q 010871 279 RFHPVNNNFLSVGNANKEITVFNFSTGRI-IKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHR 357 (498)
Q Consensus 279 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 357 (498)
+|.|+..+.+++. .+.+.|=-+..... ++--.|.+-|.++.|++..+++++|++|-..++||-..... .
T Consensus 152 ~W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L--------f 221 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL--------F 221 (737)
T ss_pred EECCCCCceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccc--------c
Confidence 9999888888765 45666666655443 44446999999999999999999999999999998643211 1
Q ss_pred ccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEE
Q 010871 358 TTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIV 437 (498)
Q Consensus 358 ~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 437 (498)
....|.-+|+++.|. |+ ..++.++.. ++++= .+.....+..+|++ ||..++
T Consensus 222 ~S~~~ey~ITSva~n-----pd-~~~~v~S~n-t~R~~-----------------~p~~GSifnlsWS~-----DGTQ~a 272 (737)
T KOG1524|consen 222 TSAAEEYAITSVAFN-----PE-KDYLLWSYN-TARFS-----------------SPRVGSIFNLSWSA-----DGTQAT 272 (737)
T ss_pred cCChhccceeeeeec-----cc-cceeeeeee-eeeec-----------------CCCccceEEEEEcC-----CCceee
Confidence 136788899999997 77 555555543 33321 11122234447777 999999
Q ss_pred EEeCCCcEEEEE
Q 010871 438 AGSEDSNVYFYD 449 (498)
Q Consensus 438 ~gs~dg~I~iwd 449 (498)
+|...|.+.+=.
T Consensus 273 ~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 273 CGTSTGQLIVAY 284 (737)
T ss_pred ccccCceEEEee
Confidence 999999766543
No 205
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=1.8e-15 Score=138.16 Aligned_cols=267 Identities=17% Similarity=0.200 Sum_probs=197.2
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
+-+.+.++. +|..|+.|+.-|.|-.+|..+ ..+...+. -...|.++.|..+.++++++ ....+.||| ..|..++.
T Consensus 131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVT-KKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHC 205 (545)
T ss_pred CCeeeeecC-CccEEEecCCccceeeeeccc-ceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEee
Confidence 446688888 999999999999999999998 66666555 35678999999888777776 456799999 56888999
Q ss_pred EecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCc
Q 010871 269 IYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 269 ~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~ 347 (498)
++.+..+..+.|.| -..+|++++..|.+..-|+.+|+.+..+. ..+.+..++-+|-+..+-+|...|+|.+|......
T Consensus 206 lk~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhcCchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 99999999999999 45788888999999999999999999884 56788889999999999999999999999876554
Q ss_pred ccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeee
Q 010871 348 GALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPL 427 (498)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (498)
.... ...|.++|.++++. ++|.+++|.+.|..++|||++.-.+.. ... .......+ +++
T Consensus 285 PLvK-------iLcH~g~V~siAv~-----~~G~YMaTtG~Dr~~kIWDlR~~~ql~----t~~-tp~~a~~l--s~S-- 343 (545)
T KOG1272|consen 285 PLVK-------ILCHRGPVSSIAVD-----RGGRYMATTGLDRKVKIWDLRNFYQLH----TYR-TPHPASNL--SLS-- 343 (545)
T ss_pred hHHH-------HHhcCCCcceEEEC-----CCCcEEeecccccceeEeeeccccccc----eee-cCCCcccc--ccc--
Confidence 3332 25688999999887 999999999999999999998542110 000 11111122 333
Q ss_pred eeccCCCEEEEEeCCCcEEEEECC-CCCccceeeecCC--CCCeEEEEEcCCCCEEEEEeCCC
Q 010871 428 LSLEKGEYIVAGSEDSNVYFYDLA-KPKHSCVNKLQGH--RFPVVAVAWNHGENLLASSDLYG 487 (498)
Q Consensus 428 ~~~~~~~~l~~gs~dg~I~iwd~~-~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~s~~~Dg 487 (498)
+..+||.+ ....|.||.-. .+....-..+-.| .++|..+.|.|-...|-.|..-|
T Consensus 344 ----qkglLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 344 ----QKGLLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred ----cccceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 34444444 44569999532 2111112222223 35799999999766665554433
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.7e-13 Score=118.86 Aligned_cols=256 Identities=16% Similarity=0.242 Sum_probs=164.2
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCce-------------eEEeecCCCCeEEEEEccCCCEEEEEeC-C
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV-------------IKLLNGHSKDVTDFDFSSNNQYIASSSM-D 252 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~-------------~~~~~~h~~~V~~l~~s~~~~~l~s~s~-d 252 (498)
...|+|++|-|..+..|+.|+..| |.||........ +..-.+| ..|++|.|.+||..|++++. |
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 457999999998888999999877 999988642211 1122345 68999999999999999886 5
Q ss_pred CcEEEEECCCCcEEEEE-ecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC-CCcEEEEeecCCCeEEEEEcCCCCEEE
Q 010871 253 KTVRVWELTKGDCIRVI-YGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS-TGRIIKKLVVDSEVTSMDHDHTGQLLF 330 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~ 330 (498)
..|.|||..++.++... .+.+++.-+.|+|++ .+|+++.-|+..++|+.. +....+..-..+.|...+|+|.|+.|+
T Consensus 218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred ceEEEEcCCCCCcccccccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence 67999999999887766 566788899999965 677777899999999543 344444444566999999999999655
Q ss_pred -EEcCCCeEEEEEccCCccccccc-----------ccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCc-------
Q 010871 331 -CGDAQGCIYSISMESHSGALSRS-----------HRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGN------- 391 (498)
Q Consensus 331 -~~~~dg~i~i~d~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~------- 391 (498)
+.+..-.++-............. ......... ....+-....+++.|.|.+|++.-..+.
T Consensus 297 f~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag-~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~ 375 (445)
T KOG2139|consen 297 FACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAG-QRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKL 375 (445)
T ss_pred EEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcC-cccccCccceeeECCCCCEEEEEEcCCchhhhhhh
Confidence 44445555544443333222210 000000011 1111122234455599999999876543
Q ss_pred -EEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 392 -LSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 392 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
|.+||.+....- ....+...-..... -.+|.|.. .++.+|..+=.-|.+.-|++.
T Consensus 376 ~i~~fdtr~sp~v-els~cg~i~ge~P~--~IsF~pl~--n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 376 HISRFDTRKSPPV-ELSYCGMIGGEYPA--YISFGPLK--NEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhhcccccCce-EEEecccccCCCCc--eEEeeecc--cCCcEEEEEeccCceEeeeeE
Confidence 666776643211 11111222222222 23566544 477888888778888877765
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.5e-13 Score=133.60 Aligned_cols=237 Identities=13% Similarity=0.097 Sum_probs=153.8
Q ss_pred CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC---CCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCc
Q 010871 210 GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM---DKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNN 286 (498)
Q Consensus 210 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~ 286 (498)
..|.+||.+. ...+.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++...............|+|++..
T Consensus 179 ~~l~~~d~dg--~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCC--CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCE
Confidence 3688888874 333445557778999999999998886543 35799999998865443333334456899998877
Q ss_pred EEEEEeCCC--cEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC-CCeEEEEEccCCcccccccccccccCCCc
Q 010871 287 FLSVGNANK--EITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA-QGCIYSISMESHSGALSRSHRHRTTGKRK 363 (498)
Q Consensus 287 ~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 363 (498)
++++...+| .|++||+.+++..........+....|+|+|+.|+..+. +|...+|.++...+..... ....
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l------t~~~ 330 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI------TWEG 330 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe------ecCC
Confidence 776666555 588999998876655555567788999999998876654 4444555443322221111 1111
Q ss_pred cceeeEEEeEeeEcCCCcEEEEEEcC---CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEe
Q 010871 364 CPVTTVQYRSFSLLAGGPVLLTCTQD---GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGS 440 (498)
Q Consensus 364 ~~i~~~~~~~~~~s~~~~~l~t~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs 440 (498)
...... .++|+|++|+..+.+ ..|.+||+.++....+ . .........|+| ||++|+.++
T Consensus 331 ~~~~~~-----~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L-----t---~~~~~~~p~~Sp-----DG~~i~~~s 392 (429)
T PRK03629 331 SQNQDA-----DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-----T---DTFLDETPSIAP-----NGTMVIYSS 392 (429)
T ss_pred CCccCE-----EECCCCCEEEEEEccCCCceEEEEECCCCCeEEe-----C---CCCCCCCceECC-----CCCEEEEEE
Confidence 122223 345999998876654 3477888865422111 0 111112235665 999999998
Q ss_pred CCCc---EEEEECCCCCccceeeecCCCCCeEEEEEcC
Q 010871 441 EDSN---VYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH 475 (498)
Q Consensus 441 ~dg~---I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp 475 (498)
.++. ++++++... ....+.+|.+.+...+|+|
T Consensus 393 ~~~~~~~l~~~~~~G~---~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 393 SQGMGSVLNLVSTDGR---FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred cCCCceEEEEEECCCC---CeEECccCCCCcCCcccCC
Confidence 8764 677777542 3566778888899999987
No 208
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.62 E-value=1.8e-13 Score=120.03 Aligned_cols=294 Identities=14% Similarity=0.169 Sum_probs=186.0
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEE-EeCCCcEEEEECCCCcEEEEEe
Q 010871 192 ILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS-SSMDKTVRVWELTKGDCIRVIY 270 (498)
Q Consensus 192 ~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~s~dg~v~iwd~~~~~~~~~~~ 270 (498)
-++||| +|+++|+.+.- .+.|-|..+ .+..+.+. .-+.|.-+.|..|..+++. ...|+.|.+|++...+-...+.
T Consensus 13 ~c~fSp-~g~yiAs~~~y-rlviRd~~t-lq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSP-CGNYIASLSRY-RLVIRDSET-LQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECC-CCCeeeeeeee-EEEEeccch-hhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence 368999 99999999865 677888776 44333332 2467888999988876654 5678899999999888877777
Q ss_pred cC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEE---------
Q 010871 271 GV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYS--------- 340 (498)
Q Consensus 271 ~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i--------- 340 (498)
.. .+...++|+|++..+|.+...+-.|.+|.+.+.+....--....+..++|+|+|++.+..+.....-.
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 55 57889999999989999999999999999988776655444556788999999998877654321111
Q ss_pred -----EEccCCcccccc-------------cccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc---
Q 010871 341 -----ISMESHSGALSR-------------SHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL--- 399 (498)
Q Consensus 341 -----~d~~~~~~~~~~-------------~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~--- 399 (498)
+++++....-.. ....+...- -.++....++++|.+++|++|+.|+.+++.+--+
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY----e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY----ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP 244 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee----eeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence 111110000000 000000000 0112223445669999999999999998754211
Q ss_pred --cc--------------------cceeeEeEe----------------------------eccC--CceeeeEEEEeee
Q 010871 400 --EI--------------------QGYLTFRCS----------------------------LKLA--PRVHSIRASFCPL 427 (498)
Q Consensus 400 --~~--------------------~~~~~~~~~----------------------------~~~~--~~~~~~~~~~~~~ 427 (498)
.. ..+....+. .... .....-.....-+
T Consensus 245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l 324 (447)
T KOG4497|consen 245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL 324 (447)
T ss_pred hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence 00 000000000 0000 0000001122224
Q ss_pred eeccCCCEEEEEeCC--CcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 428 LSLEKGEYIVAGSED--SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 428 ~~~~~~~~l~~gs~d--g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
++++|..|+++-... +.+.+||++..+ +...-....+|....|+|....|+.+.....+++|....
T Consensus 325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~---l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 325 AFSCDSTYAATRNDKYPNALWLWDLQNLK---LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred eecCCceEEeeecCCCCceEEEEechhhh---hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 444588888886553 579999999844 233333467899999999988888887778899998654
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=2.3e-13 Score=118.92 Aligned_cols=244 Identities=16% Similarity=0.225 Sum_probs=171.5
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc---EEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEc
Q 010871 227 LNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD---CIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNF 302 (498)
Q Consensus 227 ~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~ 302 (498)
+.--..+|+|.+|++|++.++.+.....|.|+.....+ ..+++..|. .+.++.|.|. .+.|++++.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~-snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK-SNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC-CCceeEccCCCCcccccc
Confidence 33345789999999999999999999999999987654 667777775 6779999994 567889999999999998
Q ss_pred C-CCcEE---EEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC
Q 010871 303 S-TGRII---KKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA 378 (498)
Q Consensus 303 ~-~~~~~---~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~ 378 (498)
. .++-. ..+.++...+++.|+|.++.|++|+....|.+|-++....=....+. ...+.+.|+++.|+ |
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhi---kkPirStv~sldWh-----p 156 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHI---KKPIRSTVTSLDWH-----P 156 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhh---CCccccceeeeecc-----C
Confidence 4 33322 23368999999999999999999999999999877654433222221 25567788999888 9
Q ss_pred CCcEEEEEEcCCcEEEEEccccccce----eeEeEee-------cc-CCceeeeEEEEeeeeeccCCCEEEEEeCCCcEE
Q 010871 379 GGPVLLTCTQDGNLSFFSVALEIQGY----LTFRCSL-------KL-APRVHSIRASFCPLLSLEKGEYIVAGSEDSNVY 446 (498)
Q Consensus 379 ~~~~l~t~s~dg~i~iwd~~~~~~~~----~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~ 446 (498)
++-+|++|+.|+..++|..--..... ....... .. ..........|+| +|..|+-.+.|+.+.
T Consensus 157 nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-----sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 157 NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-----SGNRLAWVGHDSTVS 231 (361)
T ss_pred CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-----CCCEeeEecCCCceE
Confidence 99999999999999999753210000 0000000 01 1222333445665 999999999999999
Q ss_pred EEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 010871 447 FYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486 (498)
Q Consensus 447 iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D 486 (498)
+-|...+... +..+..-.-+..++.|-.+ +.++.++.|
T Consensus 232 ~~da~~p~~~-v~~~~~~~lP~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 232 FVDAAGPSER-VQSVATAQLPLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred EeecCCCchh-ccchhhccCCceeeEeecC-CceeecCCC
Confidence 9998876422 3333333367777777543 233334444
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.4e-14 Score=134.86 Aligned_cols=230 Identities=15% Similarity=0.256 Sum_probs=152.6
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEe-cC-CCeEEEEEEcC-CCcEEEEEeCCCcEEE
Q 010871 223 VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIY-GV-SSQLCIRFHPV-NNNFLSVGNANKEITV 299 (498)
Q Consensus 223 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~-~~v~~i~~~~~-~~~~l~~g~~dg~i~i 299 (498)
....+.||++-|.|++|+.+|.+|++||.|-.+.|||.-..+.+..+. +| ..|.++.|.|. +..++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345788999999999999999999999999999999999888888776 44 47889999996 4568889999999999
Q ss_pred EEcCCCc----------EEEEe-ecCCCeEEEEEcCCC-CEEEEEcCCCeEEEEEccCCccccccc-ccccccCCCccce
Q 010871 300 FNFSTGR----------IIKKL-VVDSEVTSMDHDHTG-QLLFCGDAQGCIYSISMESHSGALSRS-HRHRTTGKRKCPV 366 (498)
Q Consensus 300 wd~~~~~----------~~~~~-~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~i 366 (498)
+|+...+ ....+ -|...|..++..|++ ..+.++++||+|+-||++......... .......-+..
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~-- 199 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ-- 199 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh--
Confidence 9997421 22222 266788889999998 689999999999999998632211100 00000000000
Q ss_pred eeEEEeEeeEcCC-CcEEEEEEcCCcEEEEEccccccceee-----E------eEe-----ecc---CCceeeeEEEEee
Q 010871 367 TTVQYRSFSLLAG-GPVLLTCTQDGNLSFFSVALEIQGYLT-----F------RCS-----LKL---APRVHSIRASFCP 426 (498)
Q Consensus 367 ~~~~~~~~~~s~~-~~~l~t~s~dg~i~iwd~~~~~~~~~~-----~------~~~-----~~~---~~~~~~~~~~~~~ 426 (498)
-+...++.++|. ..+|++|+.|-..++||.+...+.... . .|. ... .+.......+..-
T Consensus 200 -lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 200 -LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred -hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 022334444465 467899999999999996532111100 0 000 000 0101111112233
Q ss_pred eeeccCCCEEEEEeCCCcEEEEECCCCCc
Q 010871 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKH 455 (498)
Q Consensus 427 ~~~~~~~~~l~~gs~dg~I~iwd~~~~~~ 455 (498)
++++|+|.-|+..-..-.|++||+..++.
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 45556888777766666899999987653
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=1.1e-11 Score=108.66 Aligned_cols=278 Identities=13% Similarity=0.157 Sum_probs=180.1
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEE-EEeCC------CcEEEEECCC
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA-SSSMD------KTVRVWELTK 262 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~s~d------g~v~iwd~~~ 262 (498)
...++|+. |...+++|..+| .+||+.+. .+.....+.+.+.+.-+...-..++|+ .|+.+ ..|.|||=..
T Consensus 8 ~lsvs~NQ-D~ScFava~~~G-friyn~~P-~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQ-DHSCFAVATDTG-FRIYNCDP-FKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEcc-CCceEEEEecCc-eEEEecCc-hhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 45599998 888888888877 89999875 222222222333222222222334554 34333 4699999888
Q ss_pred CcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC-CCcEEEEee---cCCCeEEEEEcCCCCEEEE-EcCCCe
Q 010871 263 GDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS-TGRIIKKLV---VDSEVTSMDHDHTGQLLFC-GDAQGC 337 (498)
Q Consensus 263 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~---~~~~i~~l~~~~~~~~l~~-~~~dg~ 337 (498)
.+++.++....+|..+.+.++ .+++. ..+.|+||... ..+.++.+. .+..+.+++-..+..+||. |..-|.
T Consensus 85 ~~~i~el~f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 85 ERCIIELSFNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred CcEEEEEEeccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 899999999999999999762 34444 46899999987 556666664 3445555554444455554 456799
Q ss_pred EEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCc-EEEEEccccccceeeEeEeeccCCc
Q 010871 338 IYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGN-LSFFSVALEIQGYLTFRCSLKLAPR 416 (498)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~ 416 (498)
|.+.|+...... ......+|.+.|.++... .+|..++|+|..|+ |||||..++..... ...-..+
T Consensus 161 vQi~dL~~~~~~-----~p~~I~AH~s~Iacv~Ln-----~~Gt~vATaStkGTLIRIFdt~~g~~l~E----~RRG~d~ 226 (346)
T KOG2111|consen 161 VQIVDLASTKPN-----APSIINAHDSDIACVALN-----LQGTLVATASTKGTLIRIFDTEDGTLLQE----LRRGVDR 226 (346)
T ss_pred EEEEEhhhcCcC-----CceEEEcccCceeEEEEc-----CCccEEEEeccCcEEEEEEEcCCCcEeee----eecCCch
Confidence 999998754432 112247899999999887 89999999999997 79999987632111 1111122
Q ss_pred eeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccc----------------------eeeecCCCCCeEEEEEc
Q 010871 417 VHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSC----------------------VNKLQGHRFPVVAVAWN 474 (498)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~----------------------~~~~~~h~~~V~~l~~s 474 (498)
+....++++++..+||++|..|+|+||.+....... +..++-..+...-++|-
T Consensus 227 -----A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg 301 (346)
T KOG2111|consen 227 -----ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFG 301 (346)
T ss_pred -----heEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEec
Confidence 233344444599999999999999999987532100 11122223455566777
Q ss_pred CCCCEEEEEeCCCeEEEee
Q 010871 475 HGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 475 p~~~~l~s~~~Dg~i~iW~ 493 (498)
.+.+.++..+.||.-+=+.
T Consensus 302 ~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 302 SETNTVIAICADGSYYKFK 320 (346)
T ss_pred CCCCeEEEEEeCCcEEEEE
Confidence 6656666677788765443
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=1.1e-12 Score=117.07 Aligned_cols=155 Identities=14% Similarity=0.259 Sum_probs=127.9
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee---cCCCCeEEEEEccCCCEEEEE--eCCCcEEEEECC
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN---GHSKDVTDFDFSSNNQYIASS--SMDKTVRVWELT 261 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~s~--s~dg~v~iwd~~ 261 (498)
...|.+|.++. +.|+++-.+. |.|||+.+ .++++++. .+...+.++.+++.+.+|+-= ...|.|.|||+.
T Consensus 87 pt~IL~VrmNr---~RLvV~Lee~-IyIydI~~-MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~ 161 (391)
T KOG2110|consen 87 PTSILAVRMNR---KRLVVCLEES-IYIYDIKD-MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI 161 (391)
T ss_pred CCceEEEEEcc---ceEEEEEccc-EEEEeccc-ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc
Confidence 35788888854 6677666555 99999998 77777664 356667888888778888853 346899999999
Q ss_pred CCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCc-EEEEEcCCCcEEEEeec---CCCeEEEEEcCCCCEEEEEcCCC
Q 010871 262 KGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKE-ITVFNFSTGRIIKKLVV---DSEVTSMDHDHTGQLLFCGDAQG 336 (498)
Q Consensus 262 ~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~---~~~i~~l~~~~~~~~l~~~~~dg 336 (498)
+-+.+..+..|. .+.+++|++ ++.+|++++..|+ |||+.+.+|+.+..|.. ...|.+++|++++++|++.+..+
T Consensus 162 nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 162 NLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred cceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC
Confidence 999999999885 677999999 5589999999987 68999999999999953 45789999999999999999999
Q ss_pred eEEEEEccCCc
Q 010871 337 CIYSISMESHS 347 (498)
Q Consensus 337 ~i~i~d~~~~~ 347 (498)
+|++|.++...
T Consensus 241 TVHiFKL~~~~ 251 (391)
T KOG2110|consen 241 TVHIFKLEKVS 251 (391)
T ss_pred eEEEEEecccc
Confidence 99999986543
No 213
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3.5e-14 Score=130.57 Aligned_cols=265 Identities=15% Similarity=0.239 Sum_probs=182.6
Q ss_pred ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEe-cC-CCeEEEEEEcC-CCcEEEEEeCCCcEE
Q 010871 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIY-GV-SSQLCIRFHPV-NNNFLSVGNANKEIT 298 (498)
Q Consensus 222 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~-~~v~~i~~~~~-~~~~l~~g~~dg~i~ 298 (498)
.+...|.+|.+.|..|.|+..|..|++||.|..|.+||...++....+. +| ..+....|.|. +...+++++.||.++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4456788999999999999999999999999999999999988776665 34 35667778876 346788889999999
Q ss_pred EEEcCC-CcEE---EEeecCCCeEEEEEcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeE
Q 010871 299 VFNFST-GRII---KKLVVDSEVTSMDHDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRS 373 (498)
Q Consensus 299 iwd~~~-~~~~---~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 373 (498)
+=.+.. +.+. ...+|.+.|..++..|... .|.+++.|+.+.-+|++........... ..+... .+....
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr----~~~~~~--~v~L~~ 286 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR----EADEKE--RVGLYT 286 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee----ccCCcc--ceeeee
Confidence 887643 3332 2226899999999999875 6889999999999998765544333211 122221 233334
Q ss_pred eeEcCCCc-EEEEEEcCCcEEEEEccccccceeeE----eEeecc--CCceeeeEEEEeeeeeccCCCEEEEEeCCCcEE
Q 010871 374 FSLLAGGP-VLLTCTQDGNLSFFSVALEIQGYLTF----RCSLKL--APRVHSIRASFCPLLSLEKGEYIVAGSEDSNVY 446 (498)
Q Consensus 374 ~~~s~~~~-~l~t~s~dg~i~iwd~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~ 446 (498)
++..|... .+++++.|..+++||.+.-....... .+...+ ...+....+.|+ .++.-|.+.-.|-.|+
T Consensus 287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-----h~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-----HDGSELLASYNDEDIY 361 (559)
T ss_pred EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec-----CCccceeeeecccceE
Confidence 44446554 89999999999999987532221110 011110 122222223444 3666677777788899
Q ss_pred EEECCCCCc----------cceee-ecCCCC--CeEEEEE-cCCCCEEEEEeCCCeEEEeecCCC
Q 010871 447 FYDLAKPKH----------SCVNK-LQGHRF--PVVAVAW-NHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 447 iwd~~~~~~----------~~~~~-~~~h~~--~V~~l~~-sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
+|.-.-+.+ ..+.. ++||.. .|.++-| -|...++++|+.-|.|.||+-.++
T Consensus 362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred EeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence 996543332 22333 788864 4777765 588899999999999999997653
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=6.3e-13 Score=119.30 Aligned_cols=252 Identities=12% Similarity=0.142 Sum_probs=172.2
Q ss_pred cccEEEEEEecCCCC-EEEEEeCCCcEEEEEcCCCCceeE------EeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 187 KAAVTILKFGHMSSD-LLAYGASDGTLTVCTVSDPPKVIK------LLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~-~lasg~~dg~i~iwd~~~~~~~~~------~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
...|+.++|.-+... .|...+.|-.+..+.... ..... ......++|..+... ++ .|++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E-~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEE-FEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccC-Cccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEe
Confidence 346778888752222 444444666677777665 33222 234456777777765 33 788889999999999
Q ss_pred CCCC----cEEEEEecCCCeEEEEEEcCCCcEEEEEeCC--CcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEc
Q 010871 260 LTKG----DCIRVIYGVSSQLCIRFHPVNNNFLSVGNAN--KEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 260 ~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 333 (498)
...+ ..+..+..+.++..+.-++....++++|+.. ..+.+||+++.+.+..-+. -|+. +|
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN---------vpnD-~L---- 197 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN---------VPND-RL---- 197 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC---------CCCc-cc----
Confidence 8844 3455666777888888888888899999998 8899999988755443321 1111 11
Q ss_pred CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCC--CcEEEEEEcCCcEEEEEccccccceeeEeEee
Q 010871 334 AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG--GPVLLTCTQDGNLSFFSVALEIQGYLTFRCSL 411 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~--~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~ 411 (498)
+=.|-+|+. .+.|. +. ...|++++.-+.+++||.+.+..+...+...
T Consensus 198 -~LrVPvW~t------------------------di~Fl-----~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~- 246 (412)
T KOG3881|consen 198 -GLRVPVWIT------------------------DIRFL-----EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL- 246 (412)
T ss_pred -cceeeeeec------------------------cceec-----CCCCCceEEEEecceeEEEecCcccCcceeEeccc-
Confidence 223445533 22332 33 5678888888888888887544333222111
Q ss_pred ccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 010871 412 KLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIV 491 (498)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~i 491 (498)
.. ..+.+...++|++|++|..-|.+..||++.++. ....+++-.+.|++|..+|.+++|+++|-|..|||
T Consensus 247 --E~-------~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI 316 (412)
T KOG3881|consen 247 --EN-------PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL-LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI 316 (412)
T ss_pred --cC-------cceeeeecCCCcEEEEecccchhheecccCcee-eccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence 11 222223335999999999999999999998652 34458889999999999999999999999999999
Q ss_pred eecCC
Q 010871 492 WKRAK 496 (498)
Q Consensus 492 W~~~~ 496 (498)
+|+++
T Consensus 317 hD~kt 321 (412)
T KOG3881|consen 317 HDIKT 321 (412)
T ss_pred eeccc
Confidence 99986
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1e-12 Score=123.43 Aligned_cols=286 Identities=14% Similarity=0.159 Sum_probs=191.5
Q ss_pred ccccEEEEEEecCCCC-EEEEEeCCCcEEEEEcCCCCceeEEeecCC--CCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 010871 186 CKAAVTILKFGHMSSD-LLAYGASDGTLTVCTVSDPPKVIKLLNGHS--KDVTDFDFSSNNQYIASSSMDKTVRVWELTK 262 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~-~lasg~~dg~i~iwd~~~~~~~~~~~~~h~--~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 262 (498)
|...-+.|..+| +|+ ++|+|..--.|++||+.+ . -..|..|. ..|.-.-.+.|-..++--..|.+|-+....
T Consensus 50 ~p~ast~ik~s~-DGqY~lAtG~YKP~ikvydlan-L--SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 50 MPTASTRIKVSP-DGQYLLATGTYKPQIKVYDLAN-L--SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY- 124 (703)
T ss_pred CccccceeEecC-CCcEEEEecccCCceEEEEccc-c--eeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-
Confidence 466778999999 665 677788889999999975 2 23344443 334444445555566666778888765432
Q ss_pred CcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecC-CCeEEEEEcCCCCEEEEEcCCCeEEEE
Q 010871 263 GDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD-SEVTSMDHDHTGQLLFCGDAQGCIYSI 341 (498)
Q Consensus 263 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~dg~i~i~ 341 (498)
| .-..+.-...-..++++.....++++| ....|+-++++.|+.+..+... ..++++..++...+|++|+.+|.|-+|
T Consensus 125 G-~hy~~RIP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 125 G-RHYRTRIPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred C-eeeeeecCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence 2 122223333344566666554555544 5668999999999999988644 889999999999999999999999999
Q ss_pred EccCCccccccccccc----ccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCce
Q 010871 342 SMESHSGALSRSHRHR----TTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRV 417 (498)
Q Consensus 342 d~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 417 (498)
|.+.....-....... ........|+++.|. .+|-.+++|+.+|.+.|||++.... .....+....
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~-----d~gL~~aVGts~G~v~iyDLRa~~p-----l~~kdh~~e~ 272 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR-----DDGLHVAVGTSTGSVLIYDLRASKP-----LLVKDHGYEL 272 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEec-----CCceeEEeeccCCcEEEEEcccCCc-----eeecccCCcc
Confidence 9876543322211110 011222346777765 7799999999999999999997532 2222333444
Q ss_pred eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 418 HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
......|.+. .++..+++ .....++|||-.+++ ....+. ....++.+|+-|++.+++++-.++.+..|=+.
T Consensus 273 pi~~l~~~~~---~~q~~v~S-~Dk~~~kiWd~~~Gk--~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 273 PIKKLDWQDT---DQQNKVVS-MDKRILKIWDECTGK--PMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred ceeeeccccc---CCCceEEe-cchHHhhhcccccCC--ceeecc-ccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 4444566552 12344444 345789999999976 344443 34569999999999999999988887766443
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=2.6e-13 Score=126.32 Aligned_cols=238 Identities=19% Similarity=0.280 Sum_probs=145.2
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCcee-----EEeecCCCCeEEEEE-----ccCCCEEEEEeCCCcEEEEE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVI-----KLLNGHSKDVTDFDF-----SSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~-----~~~~~h~~~V~~l~~-----s~~~~~l~s~s~dg~v~iwd 259 (498)
++...++- .|++|+..-. ..+.+|+........ ..+.+ ..-.|-+| .+.+--|+.|-.-|.|.+.|
T Consensus 126 ~~~~~~~~-~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 126 VTNTNQSG-KGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred eeeccccC-CCCEEEEecC-CeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEec
Confidence 44444444 4555554432 347888877321111 12222 12234444 34555677787788898888
Q ss_pred CCCCcEEEEEe-----cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC
Q 010871 260 LTKGDCIRVIY-----GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 260 ~~~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
....+..+.+. ....++|+.|.|.+..+++++..+|.+++||.. +.....-.+-...+++..+.....
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~-------~~~~~t~p~~~~~k~~~~f~i~t~ 274 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE-------IVCGATAPSYQALKDGDQFAILTS 274 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc-------ccccCCCCcccccCCCCeeEEeee
Confidence 76533222222 236789999999988999999999999999972 111111111222344444443321
Q ss_pred CC-----eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeE
Q 010871 335 QG-----CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRC 409 (498)
Q Consensus 335 dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 409 (498)
.+ -+.-|- ...+.| ..+++++||++|++.+.||.++|||..+... ...
T Consensus 275 ksk~~rNPv~~w~------------------~~~g~i-----n~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL----lg~ 327 (636)
T KOG2394|consen 275 KSKKTRNPVARWH------------------IGEGSI-----NEFAFSPDGKYLATVSQDGFLRIFDFDTQEL----LGV 327 (636)
T ss_pred eccccCCccceeE------------------eccccc-----cceeEcCCCceEEEEecCceEEEeeccHHHH----HHH
Confidence 11 111111 111233 3455569999999999999999999875311 000
Q ss_pred eeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEc
Q 010871 410 SLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWN 474 (498)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s 474 (498)
....-+ ..++++|+| ||+||++|++|..|.||.+.. ...+..-++|.++|..|+|.
T Consensus 328 mkSYFG--GLLCvcWSP-----DGKyIvtGGEDDLVtVwSf~e--rRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 328 MKSYFG--GLLCVCWSP-----DGKYIVTGGEDDLVTVWSFEE--RRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred HHhhcc--ceEEEEEcC-----CccEEEecCCcceEEEEEecc--ceEEEeccccccceeeEeec
Confidence 000111 123346665 999999999999999999998 45788889999999999998
No 217
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.57 E-value=1.2e-13 Score=128.40 Aligned_cols=261 Identities=11% Similarity=0.129 Sum_probs=165.1
Q ss_pred ecccccEEEEEEecCCCCEEEEEeCCCcEEEE-EcCCCCceeEEeecCCCCeEE-EEEcc-------CCCEEEEEeCCCc
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVC-TVSDPPKVIKLLNGHSKDVTD-FDFSS-------NNQYIASSSMDKT 254 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iw-d~~~~~~~~~~~~~h~~~V~~-l~~s~-------~~~~l~s~s~dg~ 254 (498)
..|..-|.|+.|+. +...+.++ .|..+.+| ++.+.. ...+.-....|.. +..-+ ....|+.++.||.
T Consensus 11 ~r~~e~vc~v~w~~-~eei~~~~-dDh~~~~~~~~~~~s--~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSS-NEEIYFVS-DDHQIFKWSDVSRDS--VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred cccceeEEeecccc-cceEEEec-cCceEEEeecccchh--hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCce
Confidence 35566778999986 55555544 45555555 444321 1111111111111 11111 2247888899999
Q ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEE
Q 010871 255 VRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~ 332 (498)
+.|.+ ..++..+.+..| ..+.+..|+|++ .-|++++.||.|++|.- +|..-.++ +...+|.|++|.|+.+.++.+
T Consensus 87 f~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 87 FVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 99987 456666667766 467899999966 56667779999999985 45443344 577899999999998755443
Q ss_pred cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeec
Q 010871 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLK 412 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 412 (498)
. .+.+.+=.+....... ...+|.+-|.++.|. +..+.+++|+.|-..++||.... .+-....
T Consensus 164 ~-g~h~~IKpL~~n~k~i-------~WkAHDGiiL~~~W~-----~~s~lI~sgGED~kfKvWD~~G~-----~Lf~S~~ 225 (737)
T KOG1524|consen 164 Q-GGHISIKPLAANSKII-------RWRAHDGLVLSLSWS-----TQSNIIASGGEDFRFKIWDAQGA-----NLFTSAA 225 (737)
T ss_pred c-CCeEEEeeccccccee-------EEeccCcEEEEeecC-----ccccceeecCCceeEEeecccCc-----ccccCCh
Confidence 2 3445554443322221 137899999999887 88999999999999999997532 1111111
Q ss_pred cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 010871 413 LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIV 491 (498)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~i 491 (498)
+...++. .+|.| + ..++.|+.+ +++ + -....+.|..++|++||..++.|...|.+.+
T Consensus 226 ~ey~ITS--va~np-----d-~~~~v~S~n-t~R---~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 226 EEYAITS--VAFNP-----E-KDYLLWSYN-TAR---F----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred hccceee--eeecc-----c-cceeeeeee-eee---e----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 2222322 25665 6 566655542 222 1 1224578999999999999999999888764
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=9.2e-13 Score=130.21 Aligned_cols=235 Identities=14% Similarity=0.135 Sum_probs=151.7
Q ss_pred CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCc
Q 010871 210 GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD---KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNN 286 (498)
Q Consensus 210 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~ 286 (498)
..|.+||... ...+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...............|+|++..
T Consensus 184 ~~l~i~D~~g--~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDG--YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCC--CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence 4688999864 4445566677889999999999999987743 4699999998876443333334457899998877
Q ss_pred EEEEEeCCC--cEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEc-CCCe--EEEEEccCCcccccccccccccCC
Q 010871 287 FLSVGNANK--EITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGD-AQGC--IYSISMESHSGALSRSHRHRTTGK 361 (498)
Q Consensus 287 ~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~ 361 (498)
++++.+.+| .|++||+.+++......+.......+|+|+|+.|+.++ .+|. |+++++.... ..... .
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--~~~lt------~ 333 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--AERLT------F 333 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEee------c
Confidence 777766666 59999998887654434444556789999999887665 4454 5555554322 11110 0
Q ss_pred CccceeeEEEeEeeEcCCCcEEEEEEcCC---cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEE
Q 010871 362 RKCPVTTVQYRSFSLLAGGPVLLTCTQDG---NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVA 438 (498)
Q Consensus 362 ~~~~i~~~~~~~~~~s~~~~~l~t~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (498)
....... .+++|+|++|+..+.++ .|.+||+.++... . ..... ......|+| ||++|+.
T Consensus 334 ~g~~~~~-----~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-----~-Lt~~~--~~~~p~~sp-----dG~~i~~ 395 (433)
T PRK04922 334 QGNYNAR-----ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-----T-LTPGS--LDESPSFAP-----NGSMVLY 395 (433)
T ss_pred CCCCccC-----EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-----E-CCCCC--CCCCceECC-----CCCEEEE
Confidence 1111222 34459999998776543 5889998654221 1 11111 112235665 9998887
Q ss_pred EeCC---CcEEEEECCCCCccceeeecCCCCCeEEEEEcC
Q 010871 439 GSED---SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH 475 (498)
Q Consensus 439 gs~d---g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp 475 (498)
.+.+ +.|+++++... ....+..+.+.+...+|+|
T Consensus 396 ~s~~~g~~~L~~~~~~g~---~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 396 ATREGGRGVLAAVSTDGR---VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEecCCceEEEEEECCCC---ceEEcccCCCCCCCCccCC
Confidence 7664 36888888643 2455555667788888886
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=7.5e-13 Score=117.59 Aligned_cols=194 Identities=12% Similarity=0.142 Sum_probs=137.5
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee-cCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCC--
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN-GHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELTKG-- 263 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~~~-- 263 (498)
-.+..++|++ .-..+|++..|-.|++|+-.. .....++ .-...|+|++|-|.+ +.|+.|+..| |.+|.....
T Consensus 99 ~dlr~~aWhq-H~~~fava~nddvVriy~kss--t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred cceeeEeech-hhhhhhhhccCcEEEEeccCC--CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 3578899998 666788999999999999875 3444444 345789999999965 5677777665 999986521
Q ss_pred --c----------EEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEE
Q 010871 264 --D----------CIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLF 330 (498)
Q Consensus 264 --~----------~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~ 330 (498)
. .+..-.+|..|.++.|.+++..++-+.-.|..|.|||..++..+... .....+.-+.|+|++.+|+
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 1 12233456789999999976555555557789999999999877666 4567889999999999999
Q ss_pred EEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 331 CGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 331 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
+++-|+..++|+....-..... .-..+.|....|+ |.|.+|+.... |.-++|.+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw-------~lgsgrvqtacWs-----pcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERW-------ILGSGRVQTACWS-----PCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred Eecccceeeeehhcccceecce-------eccCCceeeeeec-----CCCCEEEEEEc-CCceEEEEe
Confidence 9999999999954322111110 1122356666665 88987765543 234455543
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=2.4e-12 Score=112.71 Aligned_cols=238 Identities=13% Similarity=0.176 Sum_probs=153.8
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC---CCeEEEEEEcCCCcEEEEEeCC------CcEEEEEcC
Q 010871 233 DVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV---SSQLCIRFHPVNNNFLSVGNAN------KEITVFNFS 303 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~~g~~d------g~i~iwd~~ 303 (498)
....++|+.|...++.|..+| .+||+++.-+.....+.. -.+.-+-|-. +.+.++|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEecc
Confidence 345599999998888887776 899998864432222211 1233344432 3444555444 479999988
Q ss_pred CCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEE
Q 010871 304 TGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVL 383 (498)
Q Consensus 304 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l 383 (498)
..+++.++....+|.++.+.++ .|++. ..+.|++|.....-..... .... ...++ ..++.- ..+..+|
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~-~et~--~NPkG-lC~~~~-----~~~k~~L 151 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHV-IETR--SNPKG-LCSLCP-----TSNKSLL 151 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheee-eecc--cCCCc-eEeecC-----CCCceEE
Confidence 8899999999999999999875 34433 3678999987633222111 1100 10111 222211 1223333
Q ss_pred EE-EEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCc-EEEEECCCCCccceeee
Q 010871 384 LT-CTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSN-VYFYDLAKPKHSCVNKL 461 (498)
Q Consensus 384 ~t-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~-I~iwd~~~~~~~~~~~~ 461 (498)
+. |-.-|.|+|-|+.....+ .+..+.++.....+++...+|..+|++|..|+ |+|||..+++ .+.++
T Consensus 152 afPg~k~GqvQi~dL~~~~~~---------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~--~l~E~ 220 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPN---------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT--LLQEL 220 (346)
T ss_pred EcCCCccceEEEEEhhhcCcC---------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc--Eeeee
Confidence 33 445689999998754221 11122233334445555569999999999996 8999999965 56666
Q ss_pred cC--CCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 462 QG--HRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 462 ~~--h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+. ....|.+|+|+|+..+||++|+-|+|+|+.+..
T Consensus 221 RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 53 345699999999999999999999999998875
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=7.3e-13 Score=130.67 Aligned_cols=213 Identities=15% Similarity=0.129 Sum_probs=135.1
Q ss_pred CCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCC--CcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCE
Q 010871 252 DKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNAN--KEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQL 328 (498)
Q Consensus 252 dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~ 328 (498)
+..|.+||..... .+.+..+ ..+....|+|++..++.+...+ ..|++||+.+++.............++|+|+|+.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 4689999987655 3444444 4688999999776555544332 4699999988865433333334557899999998
Q ss_pred EEEEc-CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccceee
Q 010871 329 LFCGD-AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYLT 406 (498)
Q Consensus 329 l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~ 406 (498)
|+.+. .+|.+.+|.++...+.... ...+...+....|+ |+|+.|+.++ .+|...+|++.........
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~------lt~~~~~~~~~~wS-----pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQ------LTSGAGNNTEPSWS-----PDGQSILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEe------eccCCCCcCCEEEC-----CCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 88764 6787666654433322211 12233334445554 9999877655 5788999987643221111
Q ss_pred EeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 010871 407 FRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D 486 (498)
. .... ....|+| +|++|+.++.++ +.+||+.++... .+..+ .....+.|+|+|++|++++.+
T Consensus 331 l----~~~~----~~~~~Sp-----DG~~ia~~~~~~-i~~~Dl~~g~~~---~lt~~-~~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 331 V----GGRG----YSAQISA-----DGKTLVMINGDN-VVKQDLTSGSTE---VLSST-FLDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred e----cCCC----CCccCCC-----CCCEEEEEcCCC-EEEEECCCCCeE---EecCC-CCCCCceECCCCCEEEEEEcC
Confidence 0 1111 1224554 999998887765 666999886532 22211 123567899999999999999
Q ss_pred CeEEEeec
Q 010871 487 GIVIVWKR 494 (498)
Q Consensus 487 g~i~iW~~ 494 (498)
|.+.+|.+
T Consensus 393 g~~~~l~~ 400 (429)
T PRK01742 393 GLGKVLQL 400 (429)
T ss_pred CCceEEEE
Confidence 98888875
No 222
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=1.5e-10 Score=110.80 Aligned_cols=281 Identities=11% Similarity=0.170 Sum_probs=173.3
Q ss_pred EEEEeCC----CcEEEEEcCCCCceeEEee--cCCCCeEEEEEccCCCEEEEEeC----CCcEEEEECCCC--c--EEEE
Q 010871 203 LAYGASD----GTLTVCTVSDPPKVIKLLN--GHSKDVTDFDFSSNNQYIASSSM----DKTVRVWELTKG--D--CIRV 268 (498)
Q Consensus 203 lasg~~d----g~i~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~s~----dg~v~iwd~~~~--~--~~~~ 268 (498)
++.|+.. +.|.+|+++.....+..+. .-......|+++|++++|+++.. +|.|..|++... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4455555 6899988843222222221 23455677999999999999877 468999988764 2 3333
Q ss_pred Ee-cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC-CcEEEE---ee-----------cCCCeEEEEEcCCCCEEEEE
Q 010871 269 IY-GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST-GRIIKK---LV-----------VDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 269 ~~-~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~---~~-----------~~~~i~~l~~~~~~~~l~~~ 332 (498)
.. .......+++.|++..++++...+|.|.++++.. +..... +. ......++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 33 3456678899997765566556799999999987 433322 21 12457899999999987775
Q ss_pred c-CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccceeeEeEe
Q 010871 333 D-AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYLTFRCS 410 (498)
Q Consensus 333 ~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~ 410 (498)
. ....|++|+++.....+...... .......-..+.|+ |+++++++.. .++.|.+|++.............
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~--~~~~G~GPRh~~f~-----pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSI--KVPPGSGPRHLAFS-----PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEE--ECSTTSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred ecCCCEEEEEEEeCCCceEEEeecc--ccccCCCCcEEEEc-----CCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence 4 34579999997766443221111 11222333445555 9998886665 57789999988322111111111
Q ss_pred ecc----CCceeeeEEEEeeeeeccCCCEEEEEeC-CCcEEEEECC--CCCccceeeecCCCCCeEEEEEcCCCCEEEEE
Q 010871 411 LKL----APRVHSIRASFCPLLSLEKGEYIVAGSE-DSNVYFYDLA--KPKHSCVNKLQGHRFPVVAVAWNHGENLLASS 483 (498)
Q Consensus 411 ~~~----~~~~~~~~~~~~~~~~~~~~~~l~~gs~-dg~I~iwd~~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~ 483 (498)
... ........+.++ +||++|+++.. .+.|.+|++. ++....+..+.......+.++++|+|++|+++
T Consensus 235 ~~~~~~~~~~~~~~~i~is-----pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 235 STLPEGFTGENAPAEIAIS-----PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA 309 (345)
T ss_dssp ESCETTSCSSSSEEEEEE------TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred eeccccccccCCceeEEEe-----cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence 111 111122333444 49999888765 5789999994 34445555555445568999999999999887
Q ss_pred e-CCCeEEEeecC
Q 010871 484 D-LYGIVIVWKRA 495 (498)
Q Consensus 484 ~-~Dg~i~iW~~~ 495 (498)
. .++.|.+|+++
T Consensus 310 ~~~s~~v~vf~~d 322 (345)
T PF10282_consen 310 NQDSNTVSVFDID 322 (345)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ecCCCeEEEEEEe
Confidence 7 56899999875
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.54 E-value=8.2e-12 Score=109.71 Aligned_cols=285 Identities=12% Similarity=0.150 Sum_probs=181.8
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCE-EEEEeCCCcEEEEECCCCcE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQY-IASSSMDKTVRVWELTKGDC 265 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~-l~s~s~dg~v~iwd~~~~~~ 265 (498)
-+.|.-+.|..+.-..|.....++.|.+|++.. .+-...+.....++.+++|+|||+. |.+...|-.|.+|.+.+.+.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeec-ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 356788899884445666678899999999987 6666677778889999999999965 45667788999999998887
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEeC------------------------------------CCcEEEEEcCCCcEEE
Q 010871 266 IRVIYGVSSQLCIRFHPVNNNFLSVGNA------------------------------------NKEITVFNFSTGRIIK 309 (498)
Q Consensus 266 ~~~~~~~~~v~~i~~~~~~~~~l~~g~~------------------------------------dg~i~iwd~~~~~~~~ 309 (498)
...-.....+..++|+|++ ++.+..+. +..+.+||.--.-.+.
T Consensus 127 ~~~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY 205 (447)
T ss_pred EEecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence 6655555667888899865 44443322 2234555543333333
Q ss_pred EeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC---------------Ccccccc--------------cccccccC
Q 010871 310 KLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES---------------HSGALSR--------------SHRHRTTG 360 (498)
Q Consensus 310 ~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~---------------~~~~~~~--------------~~~~~~~~ 360 (498)
.+...-.+..++|+|.+++|++|+.|+.+++.+--+ .+..... ........
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 344556788999999999999999999988754200 0000000 00000001
Q ss_pred CCcccee-------------------------eEEEeEeeEcCCCcEEEEEEc--CCcEEEEEccccccceeeEeEeecc
Q 010871 361 KRKCPVT-------------------------TVQYRSFSLLAGGPVLLTCTQ--DGNLSFFSVALEIQGYLTFRCSLKL 413 (498)
Q Consensus 361 ~~~~~i~-------------------------~~~~~~~~~s~~~~~l~t~s~--dg~i~iwd~~~~~~~~~~~~~~~~~ 413 (498)
.|..+.. ......+++++|..+++|-.. -..+-+||++.-. ....+
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-------l~avL 358 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-------LHAVL 358 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-------hhhhh
Confidence 1110000 111123566688888888654 3568899987421 11111
Q ss_pred CCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCe
Q 010871 414 APRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGI 488 (498)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~ 488 (498)
...-....+.|.| ....|+.+.....+++|...... .....+..-.|..++|+-+|..++-.+.|..
T Consensus 359 iQk~piraf~WdP-----~~prL~vctg~srLY~W~psg~~---~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 359 IQKHPIRAFEWDP-----GRPRLVVCTGKSRLYFWAPSGPR---VVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred hhccceeEEEeCC-----CCceEEEEcCCceEEEEcCCCce---EEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 1112222346776 66667766667789999987532 2333344567999999999999999998854
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.1e-12 Score=127.20 Aligned_cols=237 Identities=16% Similarity=0.135 Sum_probs=149.0
Q ss_pred CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCc
Q 010871 210 GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD---KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNN 286 (498)
Q Consensus 210 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~ 286 (498)
..|.++|.. +...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...............|+|++..
T Consensus 176 ~~L~~~D~d--G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD--GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC--CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 356666664 45555566788899999999999999877643 3599999998876544333445568999998877
Q ss_pred EEEEEeCCCcEEEEE--cCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEc-CCCeEEEEEccCCcccccccccccccCCC
Q 010871 287 FLSVGNANKEITVFN--FSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGD-AQGCIYSISMESHSGALSRSHRHRTTGKR 362 (498)
Q Consensus 287 ~l~~g~~dg~i~iwd--~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (498)
++++.+.+|...||. +..+. ...+ .+........|+|+|+.|+..+ .+|...+|.++...+...... ...
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt----~~g- 327 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT----FTG- 327 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe----cCC-
Confidence 777777888766664 54444 3344 3444566788999999877554 356666666543322211110 011
Q ss_pred ccceeeEEEeEeeEcCCCcEEEEEEcCC---cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEE
Q 010871 363 KCPVTTVQYRSFSLLAGGPVLLTCTQDG---NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAG 439 (498)
Q Consensus 363 ~~~i~~~~~~~~~~s~~~~~l~t~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 439 (498)
.... ...++|+|++|+..+.++ .|.+||+..+....+. ... ......|+| ||++|+.+
T Consensus 328 -~~~~-----~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt------~~~--~~~~p~~sp-----dg~~l~~~ 388 (427)
T PRK02889 328 -SYNT-----SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT------DTT--RDESPSFAP-----NGRYILYA 388 (427)
T ss_pred -CCcC-----ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc------CCC--CccCceECC-----CCCEEEEE
Confidence 1111 234559999998877654 5899998764321110 111 112235665 99998887
Q ss_pred eCCC---cEEEEECCCCCccceeeecCCCCCeEEEEEcCC
Q 010871 440 SEDS---NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHG 476 (498)
Q Consensus 440 s~dg---~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~ 476 (498)
+.++ .+++.++.. .....+..+.+.+...+|+|-
T Consensus 389 ~~~~g~~~l~~~~~~g---~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 389 TQQGGRSVLAAVSSDG---RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EecCCCEEEEEEECCC---CceEEeecCCCCCCCCccCCC
Confidence 7654 356666643 234555566777888889874
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.6e-12 Score=125.42 Aligned_cols=235 Identities=16% Similarity=0.131 Sum_probs=150.5
Q ss_pred CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC---CCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCc
Q 010871 210 GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM---DKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNN 286 (498)
Q Consensus 210 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~ 286 (498)
..|.+||.. +...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++..........+....|+|++..
T Consensus 182 ~~l~~~d~d--g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD--GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC--CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 468888875 4555667778889999999999999887764 46799999998876443333445668899998877
Q ss_pred EEEEEeCCCc--EEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC-CC--eEEEEEccCCcccccccccccccCC
Q 010871 287 FLSVGNANKE--ITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA-QG--CIYSISMESHSGALSRSHRHRTTGK 361 (498)
Q Consensus 287 ~l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 361 (498)
++++.+.++. |.+||+.+++......+........|+|+|+.|+..+. +| .|+++|+........ ..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l--------t~ 331 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI--------SF 331 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe--------ec
Confidence 7777776665 77789988776544345555677899999998876653 44 577777653321111 01
Q ss_pred CccceeeEEEeEeeEcCCCcEEEEEEcCC---cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEE
Q 010871 362 RKCPVTTVQYRSFSLLAGGPVLLTCTQDG---NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVA 438 (498)
Q Consensus 362 ~~~~i~~~~~~~~~~s~~~~~l~t~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (498)
....+... .++|+|+.|+..+.++ .|.+||+..+... . ..... ......|+| ||+.|+.
T Consensus 332 ~~~~~~~~-----~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~--~----lt~~~--~~~~p~~sp-----DG~~i~~ 393 (435)
T PRK05137 332 GGGRYSTP-----VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER--I----LTSGF--LVEGPTWAP-----NGRVIMF 393 (435)
T ss_pred CCCcccCe-----EECCCCCEEEEEEcCCCceEEEEEECCCCceE--e----ccCCC--CCCCCeECC-----CCCEEEE
Confidence 11222333 3459999998876542 5777776533211 1 11111 112235665 9998877
Q ss_pred EeCC------CcEEEEECCCCCccceeeecCCCCCeEEEEEcCC
Q 010871 439 GSED------SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHG 476 (498)
Q Consensus 439 gs~d------g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~ 476 (498)
.+.+ ..++++|+..+. ...+. ..+.+...+|+|-
T Consensus 394 ~~~~~~~~~~~~L~~~dl~g~~---~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 394 FRQTPGSGGAPKLYTVDLTGRN---EREVP-TPGDASDPAWSPL 433 (435)
T ss_pred EEccCCCCCcceEEEEECCCCc---eEEcc-CCCCccCcccCCC
Confidence 6543 258888887644 23333 2345677788763
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=2.7e-13 Score=126.21 Aligned_cols=137 Identities=20% Similarity=0.367 Sum_probs=112.1
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC-------------Cc--------------eeEEeecCCCCeEEEEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP-------------PK--------------VIKLLNGHSKDVTDFDF 239 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~-------------~~--------------~~~~~~~h~~~V~~l~~ 239 (498)
+..|+|++|-|-+...++++-.+|.+.+||..-. +. ++..+.--.+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4789999999966678888888999999976420 01 11122223457889999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCe
Q 010871 240 SSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEV 317 (498)
Q Consensus 240 s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i 317 (498)
+|||++||+.|.||.+||+|..+.+.+..++.. +...|++|+|| +++|++|+.|..|.||.+...+.+..- .|.+.|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD-GKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWV 377 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWV 377 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC-ccEEEecCCcceEEEEEeccceEEEeccccccce
Confidence 999999999999999999999988877666544 57889999995 589999999999999999999988776 699999
Q ss_pred EEEEEcC
Q 010871 318 TSMDHDH 324 (498)
Q Consensus 318 ~~l~~~~ 324 (498)
..++|+|
T Consensus 378 s~VaFDp 384 (636)
T KOG2394|consen 378 SVVAFDP 384 (636)
T ss_pred eeEeecc
Confidence 9999997
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=8.1e-13 Score=116.61 Aligned_cols=291 Identities=13% Similarity=0.202 Sum_probs=178.8
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc----eeEEeecCC------------CCeEEEEEccCCC--EEEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK----VIKLLNGHS------------KDVTDFDFSSNNQ--YIAS 248 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~----~~~~~~~h~------------~~V~~l~~s~~~~--~l~s 248 (498)
.+-|.+|.|.. +|.+||||..+|.|.++.-..... ....++.|. ..|..+.|.+++. .++.
T Consensus 25 adiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45689999999 999999999999999998765332 444566665 3688899988763 5667
Q ss_pred EeCCCcEEEEECCCCcEEEE---EecC---CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe--ecCCCeEEE
Q 010871 249 SSMDKTVRVWELTKGDCIRV---IYGV---SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL--VVDSEVTSM 320 (498)
Q Consensus 249 ~s~dg~v~iwd~~~~~~~~~---~~~~---~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~~~~i~~l 320 (498)
.+.|.+|++|.+........ +... ..+.++. +.+.+..+-.+. ..+.+.+ .|..-|+++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr-------~p~~~~~~~~ve------a~prRv~aNaHtyhiNSI 170 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR-------LPVEGRHDLEVE------ASPRRVYANAHTYHINSI 170 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceee-------ceeeccccceee------eeeeeeccccceeEeeee
Confidence 77899999999874432110 0000 0111111 111111111110 1122223 477889999
Q ss_pred EEcCCCCEEEEEcCCCeEEEEEccCCccccccccc-ccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 321 DHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHR-HRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 321 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
.++.|+..++++. |=.|.+|++....+....... .........-|++..|++ ...+.++-.+..|+|++-|++.
T Consensus 171 S~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp----~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 171 SVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHP----HHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCH----hHccEEEEecCCCcEEEeechh
Confidence 9999998887764 778999988755444322110 001112233466667763 3457788888999999999984
Q ss_pred cccce---eeEeEeecc--CCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCC---------
Q 010871 400 EIQGY---LTFRCSLKL--APRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHR--------- 465 (498)
Q Consensus 400 ~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~--------- 465 (498)
...-. ..+...... ......+-.+.+.+.++.+|+|+++-.. -+|++||+.... .++.+++-|.
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~-~pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA-KPVETYPVHEYLRSKLCSL 323 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC-CcceEEeehHhHHHHHHHH
Confidence 31100 000000000 0011112224455566679999998654 579999996543 3566666553
Q ss_pred ---CCe---EEEEEcCCCCEEEEEeCCCeEEEeecCCCC
Q 010871 466 ---FPV---VAVAWNHGENLLASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 466 ---~~V---~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~s 498 (498)
..| ..++|+.++..++||+....++++++..++
T Consensus 324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 222 357899999999999999999999977653
No 228
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.51 E-value=2.5e-10 Score=106.55 Aligned_cols=273 Identities=9% Similarity=0.059 Sum_probs=165.6
Q ss_pred CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC----------CCcEEEEECCCCcEEEEEecCCC-----
Q 010871 210 GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM----------DKTVRVWELTKGDCIRVIYGVSS----- 274 (498)
Q Consensus 210 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~~----- 274 (498)
++|.|.|..+ .+.+..+..-..+- .+ ++||++.|+.+.. +..|.+||..+++.+..+.....
T Consensus 27 ~~v~ViD~~~-~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEA-GRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCC-CEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 8899999998 77777776433332 24 9999998887655 78899999999999999886433
Q ss_pred ---eEEEEEEcCCCcEEEEEeC-CCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccc
Q 010871 275 ---QLCIRFHPVNNNFLSVGNA-NKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGAL 350 (498)
Q Consensus 275 ---v~~i~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 350 (498)
...++++|++..++++--. +..|.+.|+.+++.+..+.......-...+.+...+. +.||......++......
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEE--eecCceEEEEecCCCceE
Confidence 2378999976544444424 7899999999999999887654433333333333322 335554444333222211
Q ss_pred cccccccccCCCccceeeEEEeEeeEcC-CCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCc-eeeeEEEEeeee
Q 010871 351 SRSHRHRTTGKRKCPVTTVQYRSFSLLA-GGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPR-VHSIRASFCPLL 428 (498)
Q Consensus 351 ~~~~~~~~~~~~~~~i~~~~~~~~~~s~-~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 428 (498)
.... ..+.....++..-. .+.+ +|.++++... |.|.+.|+................... -......+.++.
T Consensus 182 ~~~~--~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia 254 (352)
T TIGR02658 182 IKPT--EVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA 254 (352)
T ss_pred Eeee--eeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence 1100 00011111111110 1114 7877777766 999999975432222111111111100 011112334455
Q ss_pred eccCCCEEEEEe----------CCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEeecCC
Q 010871 429 SLEKGEYIVAGS----------EDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGEN-LLASSD-LYGIVIVWKRAK 496 (498)
Q Consensus 429 ~~~~~~~l~~gs----------~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~-~Dg~i~iW~~~~ 496 (498)
+.++++.+++.. ..+.|.++|..+.+ .+..+.. ...+..|+++||++ +|++.. .++.|.+.|..+
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k--vi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK--RLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe--EEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 556888887743 12479999998844 5665553 35789999999999 887666 678899999876
Q ss_pred C
Q 010871 497 T 497 (498)
Q Consensus 497 ~ 497 (498)
+
T Consensus 332 ~ 332 (352)
T TIGR02658 332 G 332 (352)
T ss_pred C
Confidence 5
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=3.7e-12 Score=110.53 Aligned_cols=149 Identities=16% Similarity=0.247 Sum_probs=108.6
Q ss_pred EEEEEecCCCCEEEEEeC----------CCcEEEEEcCCCCceeEEeec-CCCCeEEEEEccCCCEEEEE--eCCCcEEE
Q 010871 191 TILKFGHMSSDLLAYGAS----------DGTLTVCTVSDPPKVIKLLNG-HSKDVTDFDFSSNNQYIASS--SMDKTVRV 257 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~~----------dg~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~--s~dg~v~i 257 (498)
..+.|+| .|++|+.-.. -|...||.++........+.- ..++|.+++|+|+|+.|+.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3577888 7765554332 244666766543444444443 44579999999999987654 45779999
Q ss_pred EECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeC---CCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC
Q 010871 258 WELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNA---NKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 258 wd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
||++ ++.+..+. ......+.|+|++ ++|++++. .|.|.+||+++.+.+....+.. ++.++|+|+|++|+++..
T Consensus 88 yd~~-~~~i~~~~-~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 88 YDVK-GKKIFSFG-TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATT 163 (194)
T ss_pred EcCc-ccEeEeec-CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEe
Confidence 9997 66666664 4566789999966 55555543 4679999999999988887664 789999999999998864
Q ss_pred ------CCeEEEEEcc
Q 010871 335 ------QGCIYSISME 344 (498)
Q Consensus 335 ------dg~i~i~d~~ 344 (498)
|..++||+..
T Consensus 164 ~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccceeccccEEEEEec
Confidence 6778888875
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=9.8e-14 Score=126.91 Aligned_cols=230 Identities=15% Similarity=0.169 Sum_probs=172.2
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee
Q 010871 233 DVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV 312 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 312 (498)
.-..+.++.+|++|+.|+..|.|..+|..+++....+.....|..+.|.. +..+++++ ....++|||- .|..+..+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~-~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAVA-QKKYVYVYDN-NGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHhh-hhceEEEecC-CCcEEeehh
Confidence 34678999999999999999999999999999999999889999999987 55677766 6678999995 688888888
Q ss_pred cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcE
Q 010871 313 VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNL 392 (498)
Q Consensus 313 ~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i 392 (498)
....|..+.|.|..-+|++++..|.+..-|+........ +....+.+..+.-. |-+..+-+|...|+|
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~-------~~t~~G~~~vm~qN-----P~NaVih~GhsnGtV 275 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS-------IRTGAGRTDVMKQN-----PYNAVIHLGHSNGTV 275 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeechhhhhHH-------HHccCCccchhhcC-----CccceEEEcCCCceE
Confidence 888999999999999999999999999998865432221 12233444444444 778889999999999
Q ss_pred EEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEE
Q 010871 393 SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVA 472 (498)
Q Consensus 393 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~ 472 (498)
.+|....... +.....+.+ ..+.+++.++|+|+|+.+.|..++|||++.-. .+.++.. .-+...++
T Consensus 276 SlWSP~skeP----LvKiLcH~g-------~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--ql~t~~t-p~~a~~ls 341 (545)
T KOG1272|consen 276 SLWSPNSKEP----LVKILCHRG-------PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--QLHTYRT-PHPASNLS 341 (545)
T ss_pred EecCCCCcch----HHHHHhcCC-------CcceEEECCCCcEEeecccccceeEeeecccc--ccceeec-CCCccccc
Confidence 9998764321 011111223 33344444699999999999999999999843 3444433 34677888
Q ss_pred EcCCCCEEEEEeCCCeEEEee
Q 010871 473 WNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 473 ~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
+|..| +|| .+....|.||.
T Consensus 342 ~Sqkg-lLA-~~~G~~v~iw~ 360 (545)
T KOG1272|consen 342 LSQKG-LLA-LSYGDHVQIWK 360 (545)
T ss_pred ccccc-cee-eecCCeeeeeh
Confidence 88655 343 44455899995
No 231
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.48 E-value=3.2e-13 Score=114.99 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=124.3
Q ss_pred cccEEEEEEecCCCC--EEEEEeCCCcEEEEEcCCCC---------ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcE
Q 010871 187 KAAVTILKFGHMSSD--LLAYGASDGTLTVCTVSDPP---------KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTV 255 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~--~lasg~~dg~i~iwd~~~~~---------~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v 255 (498)
.+.|.|..+....+. +|++|..+|.|.+||+.++. +.......|..+|.++.|.+.-..=++|+.+..+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 567888886554444 67788889999999998731 2333445799999999998766666788888889
Q ss_pred EEEECCCC--cEE--EEEe-cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEE
Q 010871 256 RVWELTKG--DCI--RVIY-GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLL 329 (498)
Q Consensus 256 ~iwd~~~~--~~~--~~~~-~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l 329 (498)
..|++... .+. ..+. .+.++..+..-| +++++++++.|+.|+||..++.+++..+. |...|++++|+|+..++
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence 99988743 221 1111 234677788888 56899999999999999999999999994 88999999999999999
Q ss_pred EEEcCCCeEEEEEc
Q 010871 330 FCGDAQGCIYSISM 343 (498)
Q Consensus 330 ~~~~~dg~i~i~d~ 343 (498)
++++.|+.|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 99999999999986
No 232
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=2.3e-11 Score=120.42 Aligned_cols=233 Identities=15% Similarity=0.144 Sum_probs=144.3
Q ss_pred CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCc
Q 010871 210 GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD---KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNN 286 (498)
Q Consensus 210 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~ 286 (498)
..|.++|... ...+.+..+...+...+|+|||++|+.++.+ ..|.+||+.+++............+..|+|++..
T Consensus 170 ~~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDG--ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCC--CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 3577777753 3345555677789999999999999887654 4799999998876554444445667899998776
Q ss_pred EEEEEeCCC--cEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC-CC--eEEEEEccCCcccccccccccccCC
Q 010871 287 FLSVGNANK--EITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA-QG--CIYSISMESHSGALSRSHRHRTTGK 361 (498)
Q Consensus 287 ~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 361 (498)
++++.+.++ .|++||+.+++......+........|+|+|+.|+..+. .+ .|+++++.... .... ..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l------~~ 319 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRRL------TF 319 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEe------ec
Confidence 776665554 588999988765544444444557789999998776543 34 57777665322 1110 11
Q ss_pred CccceeeEEEeEeeEcCCCcEEEEEEcCC---cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEE
Q 010871 362 RKCPVTTVQYRSFSLLAGGPVLLTCTQDG---NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVA 438 (498)
Q Consensus 362 ~~~~i~~~~~~~~~~s~~~~~l~t~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (498)
+....... .++|+|++|+.++.++ .|.+||+..+.. ..... .. ......|+| +|++|+.
T Consensus 320 ~~~~~~~~-----~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-----~~l~~-~~--~~~~p~~sp-----dg~~l~~ 381 (417)
T TIGR02800 320 RGGYNASP-----SWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-----RVLTD-TG--LDESPSFAP-----NGRMILY 381 (417)
T ss_pred CCCCccCe-----EECCCCCEEEEEEccCCceEEEEEeCCCCCe-----EEccC-CC--CCCCceECC-----CCCEEEE
Confidence 12223333 3449999999888776 788888765321 11110 11 112225555 9998888
Q ss_pred EeCCC---cEEEEECCCCCccceeeecCCCCCeEEEEE
Q 010871 439 GSEDS---NVYFYDLAKPKHSCVNKLQGHRFPVVAVAW 473 (498)
Q Consensus 439 gs~dg---~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~ 473 (498)
.+.++ .+++.+.... ....+..+.+.+..++|
T Consensus 382 ~~~~~~~~~l~~~~~~g~---~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 382 ATTRGGRGVLGLVSTDGR---FRARLPLGNGDVREPAW 416 (417)
T ss_pred EEeCCCcEEEEEEECCCc---eeeECCCCCCCcCCCCC
Confidence 77754 3555554432 23444444445555554
No 233
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.46 E-value=1.1e-11 Score=109.67 Aligned_cols=247 Identities=13% Similarity=0.186 Sum_probs=168.8
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN-GHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
.++||.+.|+....-| ...-+++.+.|.+++||--.+.++.-..+. .-..+++++.+.++...|+.|-..|++.-+.+
T Consensus 19 ~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 5689999999999988 778899999999999997665344333322 34567899999999999999999999988865
Q ss_pred C----CCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCC
Q 010871 261 T----KGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQ 335 (498)
Q Consensus 261 ~----~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 335 (498)
. ....++....| ..+..+.|.- ....+++.+.|..+.---.+.+..+..+......+++.+.-. +..+|...
T Consensus 98 sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~ 174 (404)
T KOG1409|consen 98 SEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHS 174 (404)
T ss_pred hhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccc
Confidence 4 33344444445 4566777766 456777777887776555666665555443333333333322 66778888
Q ss_pred CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCC
Q 010871 336 GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAP 415 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 415 (498)
|.|....+.......... ..+|...+.++.|. +....|++|..|..+.+||+........ ....+..
T Consensus 175 gqvt~lr~~~~~~~~i~~-----~~~h~~~~~~l~Wd-----~~~~~LfSg~~d~~vi~wdigg~~g~~~---el~gh~~ 241 (404)
T KOG1409|consen 175 GQITMLKLEQNGCQLITT-----FNGHTGEVTCLKWD-----PGQRLLFSGASDHSVIMWDIGGRKGTAY---ELQGHND 241 (404)
T ss_pred cceEEEEEeecCCceEEE-----EcCcccceEEEEEc-----CCCcEEEeccccCceEEEeccCCcceee---eeccchh
Confidence 888877665544433322 47899999999987 8899999999999999999974322111 1111122
Q ss_pred ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 416 RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
.+..+ .+. +--+.+.+++.||.|.+|+++.
T Consensus 242 kV~~l--~~~-----~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 242 KVQAL--SYA-----QHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhh--hhh-----hhheeeeeccCCCeEEEEeccc
Confidence 22222 111 2456788999999999999864
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=4.4e-11 Score=118.47 Aligned_cols=201 Identities=11% Similarity=0.094 Sum_probs=133.1
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeC---CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEE-EEeCCCc--E
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGAS---DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA-SSSMDKT--V 255 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~---dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~s~dg~--v 255 (498)
.+..|...+.+.+|+| +|+.|+..+. +..|.+||+.+ +.. ..+..+.+.+.+.+|+|||+.|+ +.+.++. |
T Consensus 196 ~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~-g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 196 YLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLET-GQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred EEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCC-CcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 4567788999999999 8888888764 46899999986 333 44556677788999999998765 5566665 7
Q ss_pred EEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCC--cEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEc
Q 010871 256 RVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANK--EITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 333 (498)
.+||+.++................|+|++..++++...+| .|+++|+.+++..........+....|+|+|+.|+...
T Consensus 273 y~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 273 YTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred EEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEE
Confidence 7778888765443333334457899998766665554444 68888987766544334455677789999999888765
Q ss_pred CC---CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC------cEEEEEccc
Q 010871 334 AQ---GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG------NLSFFSVAL 399 (498)
Q Consensus 334 ~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg------~i~iwd~~~ 399 (498)
.+ ..|.+|++....... .. .. ..+.. ..|+|+|+.|+..+.++ .|.++|+..
T Consensus 353 ~~~~~~~i~~~d~~~~~~~~---lt----~~--~~~~~-----p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSGERI---LT----SG--FLVEG-----PTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred cCCCceEEEEEECCCCceEe---cc----CC--CCCCC-----CeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 43 357777764332111 10 11 12233 34459999887765432 466666653
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.44 E-value=4.8e-10 Score=107.21 Aligned_cols=257 Identities=15% Similarity=0.145 Sum_probs=154.2
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCcEEEEE
Q 010871 191 TILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS-MDKTVRVWELTKGDCIRVI 269 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~ 269 (498)
..+.|+| +++++++++.||.|.++|+.+ .+.+..+.... ...++++++||++++++. ..+.+.++|.++.+.++.+
T Consensus 40 ~~~~~s~-Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 40 AGLKFSP-DGRYLYVANRDGTVSVIDLAT-GKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp EEEE-TT--SSEEEEEETTSEEEEEETTS-SSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred eEEEecC-CCCEEEEEcCCCeEEEEECCc-ccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence 4477899 999999999999999999998 77888877544 458899999999988765 5889999999999999888
Q ss_pred ecC--------CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEE--EEeecCCCeEEEEEcCCCCEEEEE-cCCCeE
Q 010871 270 YGV--------SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRII--KKLVVDSEVTSMDHDHTGQLLFCG-DAQGCI 338 (498)
Q Consensus 270 ~~~--------~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i 338 (498)
... ..+..+..++....++++.-..+.|.+.|....+.+ ..+..........|+|++++++++ ..+..|
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence 643 245577777766556666656688999998766533 344566778899999999987664 556677
Q ss_pred EEEEccCCcccccccc--------------ccc----ccCC-------------------C-ccceeeEEE----eEeeE
Q 010871 339 YSISMESHSGALSRSH--------------RHR----TTGK-------------------R-KCPVTTVQY----RSFSL 376 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~--------------~~~----~~~~-------------------~-~~~i~~~~~----~~~~~ 376 (498)
-++|............ ... ...+ + ...+..+.. .-+..
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~t 276 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKT 276 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE-
T ss_pred EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeec
Confidence 7777654322111000 000 0000 0 001111111 11344
Q ss_pred cCCCcEEEEE----EcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC--CcEEEEEC
Q 010871 377 LAGGPVLLTC----TQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED--SNVYFYDL 450 (498)
Q Consensus 377 s~~~~~l~t~----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d--g~I~iwd~ 450 (498)
+|+++++.+. ...+.|.++|..+. ..............+...|++ +|+++..+..+ +.|.+||.
T Consensus 277 hP~s~~vwvd~~~~~~~~~v~viD~~tl-----~~~~~i~~~~~~~~~h~ef~~-----dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNPDADTVQVIDKKTL-----KVVKTITPGPGKRVVHMEFNP-----DGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp -TT-SEEEEE-TT-SSHT-EEEEECCGT-----EEEE-HHHHHT--EEEEEE-T-----TSSEEEEEEE--TTEEEEEET
T ss_pred CCCCccEEeeccCCCCCceEEEEECcCc-----ceeEEEeccCCCcEeccEECC-----CCCEEEEEEecCCCEEEEEEC
Confidence 6899999988 44578999998854 111111111222255557776 99977666554 36999999
Q ss_pred CCCCccceeeec
Q 010871 451 AKPKHSCVNKLQ 462 (498)
Q Consensus 451 ~~~~~~~~~~~~ 462 (498)
.+ ++.+..+.
T Consensus 347 ~T--l~~~~~i~ 356 (369)
T PF02239_consen 347 KT--LKEKKRIP 356 (369)
T ss_dssp TT--TEEEEEEE
T ss_pred CC--cEEEEEEE
Confidence 99 44555554
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=3.6e-11 Score=108.20 Aligned_cols=199 Identities=15% Similarity=0.248 Sum_probs=150.1
Q ss_pred ccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC---ceeEEeecCCCCeEEEEEccCCCEEE-EEeCC--CcEEEEE
Q 010871 186 CKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP---KVIKLLNGHSKDVTDFDFSSNNQYIA-SSSMD--KTVRVWE 259 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~-s~s~d--g~v~iwd 259 (498)
-++.|-.++.. ...|++|-.+|.+.+|....+. .....+..+ ..+..|.-++...+|+ +|+.. ..+.|||
T Consensus 104 ~~~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 104 GTKSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred ccccccchhhc---CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 35566666664 3578888899999999998422 233334433 5567777777665554 58888 7899999
Q ss_pred CCCCcEEEEEecCC--------C--eEEEEEEcCC-CcEEEEEeCCCcEEEEEcCCC-cEEEEee-cCCCeEEEEEcCCC
Q 010871 260 LTKGDCIRVIYGVS--------S--QLCIRFHPVN-NNFLSVGNANKEITVFNFSTG-RIIKKLV-VDSEVTSMDHDHTG 326 (498)
Q Consensus 260 ~~~~~~~~~~~~~~--------~--v~~i~~~~~~-~~~l~~g~~dg~i~iwd~~~~-~~~~~~~-~~~~i~~l~~~~~~ 326 (498)
++..+.+..-+... + +..+.|.+.. .+.|++++.-+.+++||.+.+ +++..+. ...+++++...|.+
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 99887666544321 1 3478888731 678999999999999999876 4677774 57889999999999
Q ss_pred CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 327 QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 327 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
+.+++|...|.+..||++...... ..+.+..+.|.++..+ |.++++++++-|..+||+|+.+
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g------~~~kg~tGsirsih~h-----p~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLG------CGLKGITGSIRSIHCH-----PTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cEEEEecccchhheecccCceeec------cccCCccCCcceEEEc-----CCCceEEeeccceeEEEeeccc
Confidence 999999999999999987543211 1235667778888777 8999999999999999999986
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=4.6e-09 Score=100.56 Aligned_cols=273 Identities=12% Similarity=0.183 Sum_probs=164.4
Q ss_pred cccEEEEEEecCCCCEEEEEeC----CCcEEEEEcCCC-Cc--eeEEeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGAS----DGTLTVCTVSDP-PK--VIKLLNGHSKDVTDFDFSSNNQYIASSSM-DKTVRVW 258 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~----dg~i~iwd~~~~-~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iw 258 (498)
......++++| ++++|.+... +|.|..|.+... +. .+............++++|++++|+++.. +|.|.++
T Consensus 36 ~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 34556788999 8888888876 579999998864 22 23333324455678999999999998874 8899999
Q ss_pred ECCC-CcEEEE---Ee-----------cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc--EEE----EeecCCCe
Q 010871 259 ELTK-GDCIRV---IY-----------GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR--IIK----KLVVDSEV 317 (498)
Q Consensus 259 d~~~-~~~~~~---~~-----------~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~----~~~~~~~i 317 (498)
++.. |..... +. ......++.++|++..++++.-....|.+|++.... ... .+......
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 9986 433222 21 113456899999776666655556689999997654 322 22456778
Q ss_pred EEEEEcCCCCEEEEE-cCCCeEEEEEccCCcccccccccccccCC-C--ccceeeEEEeEeeEcCCCcEEEEEE-cCCcE
Q 010871 318 TSMDHDHTGQLLFCG-DAQGCIYSISMESHSGALSRSHRHRTTGK-R--KCPVTTVQYRSFSLLAGGPVLLTCT-QDGNL 392 (498)
Q Consensus 318 ~~l~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~--~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i 392 (498)
..+.|+|+++++++. -.++.|.++++....+.+........... . ..... .+.++|+|++|+++. ..+.|
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA-----EIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE-----EEEE-TTSSEEEEEECTTTEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce-----eEEEecCCCEEEEEeccCCEE
Confidence 999999999977555 55778999998844443322111111110 1 11233 344459999988766 46689
Q ss_pred EEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeC-CCcEEEEECC--CCCccceeeecCCCCCeE
Q 010871 393 SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE-DSNVYFYDLA--KPKHSCVNKLQGHRFPVV 469 (498)
Q Consensus 393 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-dg~I~iwd~~--~~~~~~~~~~~~h~~~V~ 469 (498)
.+|++..... .+......... ......+.++| +|++|+++.. ++.|.+|++. ++........ ..-....
T Consensus 270 ~vf~~d~~~g-~l~~~~~~~~~-G~~Pr~~~~s~-----~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~-~~~~~p~ 341 (345)
T PF10282_consen 270 SVFDLDPATG-TLTLVQTVPTG-GKFPRHFAFSP-----DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSS-VPIPSPV 341 (345)
T ss_dssp EEEEECTTTT-TEEEEEEEEES-SSSEEEEEE-T-----TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE-EESSSEE
T ss_pred EEEEEecCCC-ceEEEEEEeCC-CCCccEEEEeC-----CCCEEEEEecCCCeEEEEEEeCCCCcEEEeccc-ccCCCCE
Confidence 9999953211 12222222211 11223335555 9999988875 5789999875 4432222211 1234566
Q ss_pred EEEE
Q 010871 470 AVAW 473 (498)
Q Consensus 470 ~l~~ 473 (498)
||.|
T Consensus 342 ci~f 345 (345)
T PF10282_consen 342 CIVF 345 (345)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7765
No 238
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=8.2e-11 Score=115.86 Aligned_cols=199 Identities=15% Similarity=0.163 Sum_probs=129.8
Q ss_pred eecccccEEEEEEecCCCCEEEEEeC---CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEE-eCCC--cEE
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGAS---DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASS-SMDK--TVR 256 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~---dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-s~dg--~v~ 256 (498)
+..+...+.+.+||| +|+.||..+. +..|.+|++.+ ++.. .+....+.+..+.|+|||+.|+.. +.+| .|.
T Consensus 194 lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~-G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 194 VHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLAN-GAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred eecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCC-CCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 445567899999999 8888887542 45799999976 4322 222233345578999999988754 4455 488
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCc--EEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC
Q 010871 257 VWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKE--ITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 257 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
+||+.+++..........+....|+|++..++++...++. |.++|+.+++...............|+|+|+.|+..+.
T Consensus 271 ~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 271 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred EEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 8999988766555555566789999977666666555554 55557766654433333445667899999998877654
Q ss_pred C---CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCc---EEEEEcc
Q 010871 335 Q---GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGN---LSFFSVA 398 (498)
Q Consensus 335 d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~---i~iwd~~ 398 (498)
+ ..|++||+......... ... ... ...++|+|+.|+.++.++. +.++++.
T Consensus 351 ~~g~~~I~~~dl~~g~~~~Lt-------~~~--~~~-----~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQVLT-------DTF--LDE-----TPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred cCCCceEEEEECCCCCeEEeC-------CCC--CCC-----CceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 3 35778887644322111 000 111 2345599999999998775 5556654
No 239
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.5e-11 Score=118.51 Aligned_cols=289 Identities=15% Similarity=0.211 Sum_probs=195.2
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC--------------ceeEEeecCCCCeEEEEEccCCCEEEEEeCCC
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP--------------KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDK 253 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~--------------~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg 253 (498)
....|++|+. ...++|+||.||.++|..+.+.. ...+++.||.+.|.-+.|+.+.+.|-|+..+|
T Consensus 15 vkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3578999998 88899999999999999886521 23456889999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEE---ecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEE
Q 010871 254 TVRVWELTKGDCIRVI---YGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLF 330 (498)
Q Consensus 254 ~v~iwd~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 330 (498)
.|.+|-+-.|...... ...+.|.+++|..++ ..+.....||.|.+=.+...+...+--.......+.|++|.+.++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 9999998877543322 223457799999855 566667788888887775444332221223455788999999999
Q ss_pred EEcCCCeEEEEEccCCcccccc-ccccc---ccCCCccceeeEEEeE--e-eEcCCCcEEEEEEcCCcEEEEEccccccc
Q 010871 331 CGDAQGCIYSISMESHSGALSR-SHRHR---TTGKRKCPVTTVQYRS--F-SLLAGGPVLLTCTQDGNLSFFSVALEIQG 403 (498)
Q Consensus 331 ~~~~dg~i~i~d~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~~~~--~-~~s~~~~~l~t~s~dg~i~iwd~~~~~~~ 403 (498)
.+-.+|.+.+||....-..... ..... .+......|..+.|.. . -.-|+...|+++...|.+.+..-.....+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 9999999999987532111100 00000 0011111233343321 1 11268889999999999988765543222
Q ss_pred eeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC---------cEEEEECCCCCccceeeecCCCCCeEEEEEc
Q 010871 404 YLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS---------NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWN 474 (498)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg---------~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s 474 (498)
.. .......+.+.|++ +|..|++++.+. .|++|..- +..+.+++.....|++++|-
T Consensus 253 vv-------~dtgm~~vgakWnh-----~G~vLAvcG~~~da~~~~d~n~v~Fysp~---G~i~gtlkvpg~~It~lsWE 317 (1189)
T KOG2041|consen 253 VV-------VDTGMKIVGAKWNH-----NGAVLAVCGNDSDADEPTDSNKVHFYSPY---GHIVGTLKVPGSCITGLSWE 317 (1189)
T ss_pred eE-------EecccEeecceecC-----CCcEEEEccCcccccCccccceEEEeccc---hhheEEEecCCceeeeeEEc
Confidence 21 12224445557777 999999988753 45666544 44677888888899999998
Q ss_pred CCCCEEEEEeCCCeEEEeec
Q 010871 475 HGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 475 p~~~~l~s~~~Dg~i~iW~~ 494 (498)
..|-.++.+ .|+.|++=++
T Consensus 318 g~gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 318 GTGLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred CCceEEEEE-ecceEEEEee
Confidence 777666655 4667766444
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=6.9e-11 Score=116.94 Aligned_cols=199 Identities=14% Similarity=0.118 Sum_probs=129.7
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCC---CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEE-EEeCCC--cE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASD---GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA-SSSMDK--TV 255 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~d---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~s~dg--~v 255 (498)
.+..|...+.+.+|+| +++.|+..+.+ ..|.+||+.+ ++. ..+..+.+...++.|+|||+.|+ +.+.+| .|
T Consensus 198 ~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 198 TILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred EeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCC-CCE-EEeccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 3455677899999999 88888887743 4699999976 333 33344455566889999998775 556665 59
Q ss_pred EEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCc--EEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEE
Q 010871 256 RVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKE--ITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 256 ~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~ 332 (498)
.+||+.+++... +..+ .......|+|++..++++...+|. |.++|+.+++..............+|+|+|+.|+..
T Consensus 275 y~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 275 YVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 999999887544 3333 334578999977666666555555 677777776644333333445578999999998876
Q ss_pred cCCC---eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC---CcEEEEEcc
Q 010871 333 DAQG---CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD---GNLSFFSVA 398 (498)
Q Consensus 333 ~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d---g~i~iwd~~ 398 (498)
+.++ .|++|++......... +....... .++|+|++|+..+.+ +.|.++++.
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~~Lt---------~~~~~~~p-----~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVRTLT---------PGSLDESP-----SFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred ECCCCceeEEEEECCCCCeEECC---------CCCCCCCc-----eECCCCCEEEEEEecCCceEEEEEECC
Confidence 5433 5889987644322110 11111222 345999988777653 346666664
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.9e-10 Score=108.30 Aligned_cols=278 Identities=13% Similarity=0.212 Sum_probs=168.0
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEE-----eCC-----CcEEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASS-----SMD-----KTVRVW 258 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-----s~d-----g~v~iw 258 (498)
+.+..++++ +|+++|.+. +..++|++..... .+.+... ..+.++.|+|.|.+|.+= ..+ -.+++|
T Consensus 36 ~~~v~~~S~-~G~lfA~~~-~~~v~i~~~~~~~-~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 36 PCNVFAYSN-NGRLFAYSD-NQVVKVFEIATLK-VVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred cceeEEEcC-CCcEEEEEc-CCeEEEEEccCCc-EEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 356778888 888887765 5679999998733 3333322 278999999999988762 122 347799
Q ss_pred ECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCC--EEEE----
Q 010871 259 ELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQ--LLFC---- 331 (498)
Q Consensus 259 d~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~~---- 331 (498)
+++++.....+... ..-.+..|+.++ .+++--..+.+.+|++...+.+..--+...|+.+.++|.+. .+++
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeccceehhheehhhhcCcccccccch--hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 99996554444433 222577787754 23223345678888876644443333455666666666532 2221
Q ss_pred -EcCCCeEEEEEccCCcc-------------------------ccc------------------------ccccccccCC
Q 010871 332 -GDAQGCIYSISMESHSG-------------------------ALS------------------------RSHRHRTTGK 361 (498)
Q Consensus 332 -~~~dg~i~i~d~~~~~~-------------------------~~~------------------------~~~~~~~~~~ 361 (498)
++.-+.|++|....... .+. ..........
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 12333455554320000 000 0000011123
Q ss_pred CccceeeEEEeEeeEcCCCcEEEE--EEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEE
Q 010871 362 RKCPVTTVQYRSFSLLAGGPVLLT--CTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAG 439 (498)
Q Consensus 362 ~~~~i~~~~~~~~~~s~~~~~l~t--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 439 (498)
..+||.++.|. +++..+++ |-+-..+.|||++... ...+ ..+..+. +-|+| .|++|+.+
T Consensus 269 k~GPVhdv~W~-----~s~~EF~VvyGfMPAkvtifnlr~~~------v~df-~egpRN~--~~fnp-----~g~ii~lA 329 (566)
T KOG2315|consen 269 KEGPVHDVTWS-----PSGREFAVVYGFMPAKVTIFNLRGKP------VFDF-PEGPRNT--AFFNP-----HGNIILLA 329 (566)
T ss_pred CCCCceEEEEC-----CCCCEEEEEEecccceEEEEcCCCCE------eEeC-CCCCccc--eEECC-----CCCEEEEe
Confidence 46677777776 88876665 4467789999987321 1111 1111122 24555 99999887
Q ss_pred eCC---CcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC------CCeEEEeecCC
Q 010871 440 SED---SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDL------YGIVIVWKRAK 496 (498)
Q Consensus 440 s~d---g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~------Dg~i~iW~~~~ 496 (498)
+-+ |.|.|||+.+ ..++..+..- .-+-+.|+|||++++|+.. |+.++||++.+
T Consensus 330 GFGNL~G~mEvwDv~n--~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 330 GFGNLPGDMEVWDVPN--RKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ecCCCCCceEEEeccc--hhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 764 7899999998 5567777653 3456789999999998875 68899999764
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2e-10 Score=113.20 Aligned_cols=210 Identities=11% Similarity=0.109 Sum_probs=126.9
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCC--CcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEE
Q 010871 253 KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNAN--KEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLF 330 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 330 (498)
..|.++|...............+.+.+|+|++..++++...+ ..|.+||+.+++..........+....|+|+|+.|+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 357777764433333334445678999999775555544333 459999999887655444556677899999999876
Q ss_pred -EEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-CCcEEEEEccccccceeeEe
Q 010871 331 -CGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-DGNLSFFSVALEIQGYLTFR 408 (498)
Q Consensus 331 -~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-dg~i~iwd~~~~~~~~~~~~ 408 (498)
+.+.+|...+|.++...+..... ..+........ ++|+|+.|+..+. +|...+|.+.........
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~~~~l------t~~~~~~~~~~-----wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-- 322 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSGLRRL------TQSSGIDTEPF-----FSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-- 322 (427)
T ss_pred EEEccCCCceEEEEECCCCCcEEC------CCCCCCCcCeE-----EcCCCCEEEEEecCCCCcEEEEEECCCCceEE--
Confidence 46778876666655433322111 11222233333 4499998876654 567777766532111111
Q ss_pred EeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC---cEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 010871 409 CSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS---NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDL 485 (498)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg---~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~ 485 (498)
.. ... .......|+| +|++|+..+.++ .|++||+.+++. ..+..+ .......|+|||+.|+.++.
T Consensus 323 lt--~~g-~~~~~~~~Sp-----DG~~Ia~~s~~~g~~~I~v~d~~~g~~---~~lt~~-~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 323 VT--FTG-SYNTSPRISP-----DGKLLAYISRVGGAFKLYVQDLATGQV---TALTDT-TRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred Ee--cCC-CCcCceEECC-----CCCEEEEEEccCCcEEEEEEECCCCCe---EEccCC-CCccCceECCCCCEEEEEEe
Confidence 11 111 1112235555 999998877654 699999988653 233222 23467899999998887775
Q ss_pred CC
Q 010871 486 YG 487 (498)
Q Consensus 486 Dg 487 (498)
++
T Consensus 391 ~~ 392 (427)
T PRK02889 391 QG 392 (427)
T ss_pred cC
Confidence 43
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=3.4e-10 Score=112.02 Aligned_cols=234 Identities=15% Similarity=0.152 Sum_probs=141.4
Q ss_pred cEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCC-C--cEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcE
Q 010871 211 TLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD-K--TVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNF 287 (498)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 287 (498)
.|.++|... ...+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++...............|+|++..+
T Consensus 199 ~l~i~d~dG--~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDG--YNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCC--CCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence 566777654 3334555677889999999999988876543 3 5888999888654332223333478999988777
Q ss_pred EEEEeCCCc--EEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC-CCe--EEEEEccCCcccccccccccccCCC
Q 010871 288 LSVGNANKE--ITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA-QGC--IYSISMESHSGALSRSHRHRTTGKR 362 (498)
Q Consensus 288 l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (498)
+++...+|. |+++|+.+++......+.......+|+|+|+.|+..+. +|. |+++++.... ..... ....
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt----~~g~ 350 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLT----FEGE 350 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEe----cCCC
Confidence 777777775 78889888776544444556678899999998766543 444 5555554322 11110 0111
Q ss_pred ccceeeEEEeEeeEcCCCcEEEEEEc-CCc--EEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEE
Q 010871 363 KCPVTTVQYRSFSLLAGGPVLLTCTQ-DGN--LSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAG 439 (498)
Q Consensus 363 ~~~i~~~~~~~~~~s~~~~~l~t~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 439 (498)
. .... .++|+|++|+..+. ++. |.++|+.++.... ... .. ......|+| +|+.|+..
T Consensus 351 ~--~~~~-----~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-----lt~--~~-~d~~ps~sp-----dG~~I~~~ 410 (448)
T PRK04792 351 Q--NLGG-----SITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-----LTS--TR-LDESPSVAP-----NGTMVIYS 410 (448)
T ss_pred C--CcCe-----eECCCCCEEEEEEecCCceEEEEEECCCCCeEE-----ccC--CC-CCCCceECC-----CCCEEEEE
Confidence 1 1122 34599998887665 343 4445655432111 000 00 111224555 99988776
Q ss_pred eCC-C--cEEEEECCCCCccceeeecCCCCCeEEEEEcC
Q 010871 440 SED-S--NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH 475 (498)
Q Consensus 440 s~d-g--~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp 475 (498)
+.+ | .+++++.... ....+..+.+.+...+|+|
T Consensus 411 ~~~~g~~~l~~~~~~G~---~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 411 TTYQGKQVLAAVSIDGR---FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EecCCceEEEEEECCCC---ceEECcCCCCCcCCCccCC
Confidence 654 3 3777777532 3455666666778888887
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=1.4e-10 Score=116.71 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=101.3
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 261 (498)
.+.||.+.|..+.|+- +|.++++.|.|.++++|++++........-+|+..|..++|.|+ .++|++.|-+.++|+.+
T Consensus 170 ~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 6899999999999998 99999999999999999999844444466789999999999998 99999999999999765
Q ss_pred CCcEEEEEecC--CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC
Q 010871 262 KGDCIRVIYGV--SSQLCIRFHPVNNNFLSVGNANKEITVFNFST 304 (498)
Q Consensus 262 ~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 304 (498)
+..+..+..| ..+..++..+ +..++++++.|+.+++||+..
T Consensus 247 -~~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 247 -GTQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -cceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 4455577776 3677777776 678999999999999999753
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=6.1e-10 Score=110.51 Aligned_cols=235 Identities=14% Similarity=0.114 Sum_probs=145.3
Q ss_pred cEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcE
Q 010871 211 TLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD---KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNF 287 (498)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 287 (498)
.|.++|.+. ...+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++...............|+|++..+
T Consensus 180 ~l~~~d~~g--~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDG--ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCC--CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEE
Confidence 477777764 3345555677889999999999998876644 35889999988764433333344568999987767
Q ss_pred EEEEeCCC--cEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEc-CCC--eEEEEEccCCcccccccccccccCCC
Q 010871 288 LSVGNANK--EITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGD-AQG--CIYSISMESHSGALSRSHRHRTTGKR 362 (498)
Q Consensus 288 l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (498)
+++...+| .|++||+.+++......+........|+|+|+.|+..+ .+| .|+++++......... ....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt------~~~~ 331 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT------FVGN 331 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee------cCCC
Confidence 66666555 58888998887654334455566788999999776554 344 4666665433211110 0111
Q ss_pred ccceeeEEEeEeeEcCCCcEEEEEEcC-C--cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEE
Q 010871 363 KCPVTTVQYRSFSLLAGGPVLLTCTQD-G--NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAG 439 (498)
Q Consensus 363 ~~~i~~~~~~~~~~s~~~~~l~t~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 439 (498)
... ...++|+|+.|+..+.+ + .|.+||+.++....+ . ... ......|+| +|+.|+..
T Consensus 332 --~~~-----~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-----t-~~~--~~~~p~~sp-----dg~~i~~~ 391 (430)
T PRK00178 332 --YNA-----RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-----T-DTS--LDESPSVAP-----NGTMLIYA 391 (430)
T ss_pred --Ccc-----ceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc-----c-CCC--CCCCceECC-----CCCEEEEE
Confidence 111 23455999999877654 3 477788775422111 0 111 111235665 99998877
Q ss_pred eCC---CcEEEEECCCCCccceeeecCCCCCeEEEEEcCC
Q 010871 440 SED---SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHG 476 (498)
Q Consensus 440 s~d---g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~ 476 (498)
+.+ ..|+++++.... ...+..+.+.+...+|+|-
T Consensus 392 ~~~~g~~~l~~~~~~g~~---~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 392 TRQQGRGVLMLVSINGRV---RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EecCCceEEEEEECCCCc---eEECcCCCCCcCCCccCCC
Confidence 654 357777775422 3345555566777888863
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2e-10 Score=108.22 Aligned_cols=253 Identities=15% Similarity=0.181 Sum_probs=156.6
Q ss_pred cCCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE
Q 010871 229 GHSKDVTDFDFSSNNQYIA-SSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307 (498)
Q Consensus 229 ~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 307 (498)
.|...-+.|..+|||+|++ +|..--.|++||+........-.....++.+....++-..++.-..|.+|-+... +-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak--~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK--YGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh--cCe
Confidence 3777889999999999865 5667778999999865543333233455555554444444444456666655432 112
Q ss_pred EEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE
Q 010871 308 IKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT 387 (498)
Q Consensus 308 ~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s 387 (498)
-..+..+..-..++++.-..-|++++....|+-++++. +.+.... ......++++.+. +-..+|++|+
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEq--GrfL~P~-----~~~~~~lN~v~in-----~~hgLla~Gt 194 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ--GRFLNPF-----ETDSGELNVVSIN-----EEHGLLACGT 194 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccc--ccccccc-----ccccccceeeeec-----CccceEEecc
Confidence 22233444556677766555566666666777777753 3333222 3334567777665 7788999999
Q ss_pred cCCcEEEEEccccccceeeEeEeeccCCce-eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCC
Q 010871 388 QDGNLSFFSVALEIQGYLTFRCSLKLAPRV-HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRF 466 (498)
Q Consensus 388 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~ 466 (498)
.+|.|.+||.+....-. .+.......... ..-....+.+.+..+|-.+++|..+|.|.|||+++.+. .+..-.+..-
T Consensus 195 ~~g~VEfwDpR~ksrv~-~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-l~~kdh~~e~ 272 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVG-TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-LLVKDHGYEL 272 (703)
T ss_pred cCceEEEecchhhhhhe-eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-eeecccCCcc
Confidence 99999999988642211 111111111110 00111344445555799999999999999999998542 2223334456
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCeEEEeecCCCC
Q 010871 467 PVVAVAWNHG--ENLLASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 467 ~V~~l~~sp~--~~~l~s~~~Dg~i~iW~~~~~s 498 (498)
+|..+.|.+. +..|+|.. ...++||+-.+|+
T Consensus 273 pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGK 305 (703)
T ss_pred ceeeecccccCCCceEEecc-hHHhhhcccccCC
Confidence 8999999875 45676664 4789999987653
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.8e-08 Score=90.74 Aligned_cols=275 Identities=10% Similarity=0.142 Sum_probs=175.1
Q ss_pred CCcEEEEEcCCCCceeE--EeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCC--CcEEEE--EecC-CCeEEE
Q 010871 209 DGTLTVCTVSDPPKVIK--LLNGHSKDVTDFDFSSNNQYIASSSMD---KTVRVWELTK--GDCIRV--IYGV-SSQLCI 278 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~--~~~~~~--~~~~-~~v~~i 278 (498)
+.-|.+|++.+....+. .+-.+.+..+-|+|+|++++|.++-.+ |.|..+.++. |+.... .... .+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46699999985332222 233577888999999999999988554 6788777764 443221 1112 244778
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEEcCC-CcE---EEEeecCCC----------eEEEEEcCCCCEEEEEcC-CCeEEEEEc
Q 010871 279 RFHPVNNNFLSVGNANKEITVFNFST-GRI---IKKLVVDSE----------VTSMDHDHTGQLLFCGDA-QGCIYSISM 343 (498)
Q Consensus 279 ~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~---~~~~~~~~~----------i~~l~~~~~~~~l~~~~~-dg~i~i~d~ 343 (498)
++.+++..++.+-...|.|.++-++. |.+ +..+.|... +....+.|++++|++.+- .-.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 88886544444445568999999865 432 233445444 788999999998887754 347999998
Q ss_pred cCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccceeeEeEee----ccCCcee
Q 010871 344 ESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYLTFRCSL----KLAPRVH 418 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~ 418 (498)
.. +.+....... ......-..+.|+ |++++..+.. -+++|.+|...........+.... .+.+...
T Consensus 175 ~d--g~L~~~~~~~--v~~G~GPRHi~FH-----pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 175 DD--GKLTPADPAE--VKPGAGPRHIVFH-----PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred cc--Cccccccccc--cCCCCCcceEEEc-----CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 73 3332221111 1223334455666 9999887765 588999999886422222222211 1223333
Q ss_pred eeEEEEeeeeeccCCCEEEEEeC-CCcEEEEECCCCC--ccceeeecCCCCCeEEEEEcCCCCEEEEEeCC-CeEEEeec
Q 010871 419 SIRASFCPLLSLEKGEYIVAGSE-DSNVYFYDLAKPK--HSCVNKLQGHRFPVVAVAWNHGENLLASSDLY-GIVIVWKR 494 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~gs~-dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-g~i~iW~~ 494 (498)
.-....++ ||++|.++.. ...|.+|.+.... ...+.....+....+...|++++++|++++.+ ..|.+|.+
T Consensus 246 ~aaIhis~-----dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 246 AAAIHISP-----DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred eeEEEECC-----CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 33334454 9999998765 3478888887543 33334444555668999999999999988865 67999988
Q ss_pred CCC
Q 010871 495 AKT 497 (498)
Q Consensus 495 ~~~ 497 (498)
++.
T Consensus 321 d~~ 323 (346)
T COG2706 321 DKE 323 (346)
T ss_pred cCC
Confidence 754
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=1e-10 Score=117.61 Aligned_cols=271 Identities=11% Similarity=0.137 Sum_probs=174.2
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEE------eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKL------LNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~------~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
-+++++.++-. ++|.+|. .-.|.+||+.. +..+.. +..|...=.-.. .+.+++++..-+.+..=+.
T Consensus 7 ~~~l~~~~~~~---~~llag~-gp~i~~yd~~s-~~li~~~~~~~~~~~H~~e~~~~l---~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 7 LGPLNLPQLVS---DYLLAGS-GPEILVYDLSS-GCLIRHLIQSKILEVHRGEGKVKL---LSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred cccccchhhcc---ceeeecC-CCceEEeeCCc-hhHhhhhhhhccccccccccccee---ccceEEEEEeecceeecch
Confidence 34556666643 5666554 34599999987 433322 233411000000 1234555544333332221
Q ss_pred CCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeE-----EEEEcCCCCEEEEEcCC
Q 010871 261 TKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVT-----SMDHDHTGQLLFCGDAQ 335 (498)
Q Consensus 261 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~-----~l~~~~~~~~l~~~~~d 335 (498)
... ....+.. -+....+.- ....++.++.+..+.+||...+......++..... -+-++++.-++++|+.-
T Consensus 79 ~~~-~~~~~s~--wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 79 SNQ-IIERFSD--WIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred hhh-hhhhccc--cccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 111 1111111 111122222 34567777788999999999888888776654432 22345666789999999
Q ss_pred CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCC
Q 010871 336 GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAP 415 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 415 (498)
+.|.+|+........ ...+|.+.|..+.++ .+|.++++.|+|.++++|++.+..... ...+..
T Consensus 155 ~~iivW~~~~dn~p~-------~l~GHeG~iF~i~~s-----~dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgH 217 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPI-------RLKGHEGSIFSIVTS-----LDGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGH 217 (967)
T ss_pred ccEEEEeccccCCcc-------eecccCCceEEEEEc-----cCCcEEEEEecCcceeeeecccccccC-----cccccc
Confidence 999999987332222 247899999999887 899999999999999999998754322 112233
Q ss_pred ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCC-CCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 416 RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHR-FPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
......+.|.| + .+++++.|.+.++|+..... +..+.+|. ..|..++..++...++|++.||.+++|++
T Consensus 218 saRvw~~~~~~-----n--~i~t~gedctcrvW~~~~~~---l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 218 SARVWACCFLP-----N--RIITVGEDCTCRVWGVNGTQ---LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred cceeEEEEecc-----c--eeEEeccceEEEEEecccce---ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 33334445554 4 99999999999999777533 45777776 45999999999999999999999999997
Q ss_pred CC
Q 010871 495 AK 496 (498)
Q Consensus 495 ~~ 496 (498)
..
T Consensus 288 ~~ 289 (967)
T KOG0974|consen 288 NG 289 (967)
T ss_pred hc
Confidence 54
No 249
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.30 E-value=1.5e-10 Score=100.46 Aligned_cols=118 Identities=14% Similarity=0.318 Sum_probs=90.3
Q ss_pred cccEEEEEEecCCCCEEEE--EeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECC
Q 010871 187 KAAVTILKFGHMSSDLLAY--GASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD---KTVRVWELT 261 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~las--g~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d---g~v~iwd~~ 261 (498)
.++|.+++|+| +++.+|+ |..++.|.+||++ .+.+..+. ...+..+.|+|+|++|++++.+ |.|.+||++
T Consensus 59 ~~~I~~~~WsP-~g~~favi~g~~~~~v~lyd~~--~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 59 EGPIHDVAWSP-NGNEFAVIYGSMPAKVTLYDVK--GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCceEEEEECc-CCCEEEEEEccCCcccEEEcCc--ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 45799999999 7776544 4467899999996 45555553 5677899999999999998754 669999999
Q ss_pred CCcEEEEEecCCCeEEEEEEcCCCcEEEEEe-----CCCcEEEEEcCCCcEEEEe
Q 010871 262 KGDCIRVIYGVSSQLCIRFHPVNNNFLSVGN-----ANKEITVFNFSTGRIIKKL 311 (498)
Q Consensus 262 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~-----~dg~i~iwd~~~~~~~~~~ 311 (498)
+.+.+..... ..+..+.|+|++..++.+.+ .|..++||+. .|+.+...
T Consensus 134 ~~~~i~~~~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 134 KKKKISTFEH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CCEEeecccc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 8888877654 45789999997654444443 3788999998 46666554
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.30 E-value=4e-09 Score=98.43 Aligned_cols=281 Identities=16% Similarity=0.246 Sum_probs=177.0
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCC-------
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDK------- 253 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg------- 253 (498)
.++..-.-++..++||| .|.+|++....| |.+|...... .+..+. | ..|..+.|+|.+++|.+=+..+
T Consensus 26 ~~~~~~~~p~~~~~~SP-~G~~l~~~~~~~-V~~~~g~~~~-~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e 100 (561)
T COG5354 26 TRFESENWPVAYVSESP-LGTYLFSEHAAG-VECWGGPSKA-KLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIE 100 (561)
T ss_pred ccccccCcchhheeecC-cchheehhhccc-eEEccccchh-heeeee-c-CCceecccCcccceeeeeccCCccChhhc
Confidence 34444456889999999 999999887766 8999987744 333333 3 4689999999999999976543
Q ss_pred --------cEEEEECCCCcEEEEEecC----------------------------------------------CCeEEEE
Q 010871 254 --------TVRVWELTKGDCIRVIYGV----------------------------------------------SSQLCIR 279 (498)
Q Consensus 254 --------~v~iwd~~~~~~~~~~~~~----------------------------------------------~~v~~i~ 279 (498)
.+.+||+.+|..+..+... ..+....
T Consensus 101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFs 180 (561)
T COG5354 101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFS 180 (561)
T ss_pred cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEE
Confidence 4999999988766554322 1233344
Q ss_pred EEcCCC-cEEEE-----EeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEc-----------CCCeEEEE
Q 010871 280 FHPVNN-NFLSV-----GNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGD-----------AQGCIYSI 341 (498)
Q Consensus 280 ~~~~~~-~~l~~-----g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~-----------~dg~i~i~ 341 (498)
++|.++ ..|+. ++..+.+++|.+..+..+.... ....-..+.|.+.|++|++-. ....++++
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 455321 11221 2345666777766555544432 222334677888888665431 12456777
Q ss_pred EccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE--cCCcEEEEEccccccceeeEeEeeccCCceee
Q 010871 342 SMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT--QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHS 419 (498)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 419 (498)
++....... ....+++|....|. |.++.+++.+ .+-.+.++|++... ...... . ..
T Consensus 261 ~~~e~~i~V--------~~~~~~pVhdf~W~-----p~S~~F~vi~g~~pa~~s~~~lr~Nl------~~~~Pe-~--~r 318 (561)
T COG5354 261 RITERSIPV--------EKDLKDPVHDFTWE-----PLSSRFAVISGYMPASVSVFDLRGNL------RFYFPE-Q--KR 318 (561)
T ss_pred eecccccce--------eccccccceeeeec-----ccCCceeEEecccccceeecccccce------EEecCC-c--cc
Confidence 665322211 12446778777776 7777766654 78889999987531 111111 1 11
Q ss_pred eEEEEeeeeeccCCCEEEEEeCC---CcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEe------CCCeEE
Q 010871 420 IRASFCPLLSLEKGEYIVAGSED---SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSD------LYGIVI 490 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~gs~d---g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~------~Dg~i~ 490 (498)
-...|+| .+++++.++-| |.|.+||.... ..++..+.+- ..+-+.|+||++++.+.. .|..|.
T Consensus 319 NT~~fsp-----~~r~il~agF~nl~gni~i~~~~~r-f~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~ 390 (561)
T COG5354 319 NTIFFSP-----HERYILFAGFDNLQGNIEIFDPAGR-FKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIK 390 (561)
T ss_pred ccccccC-----cccEEEEecCCccccceEEeccCCc-eEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceE
Confidence 1225565 89999887765 78999998863 3344355443 344568999999888764 378899
Q ss_pred EeecCC
Q 010871 491 VWKRAK 496 (498)
Q Consensus 491 iW~~~~ 496 (498)
||++..
T Consensus 391 l~~v~g 396 (561)
T COG5354 391 LWDVYG 396 (561)
T ss_pred EEEecC
Confidence 999865
No 251
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.30 E-value=5.8e-09 Score=101.68 Aligned_cols=270 Identities=11% Similarity=0.051 Sum_probs=163.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEE
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCI 278 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i 278 (498)
.+..+++++.+|.|..+|..+ ++.+..+.-.......... ++..++.++.+|.+..+|..+|+.+........+.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~t-G~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAET-GKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccC-CcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC
Confidence 356888888899999999887 6666555433322222222 4668888889999999999999998887655544322
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEE------EEEcCCCCEEEEEcCCCeEEEEEccCCcccccc
Q 010871 279 RFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTS------MDHDHTGQLLFCGDAQGCIYSISMESHSGALSR 352 (498)
Q Consensus 279 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~------l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 352 (498)
.... + ..++.++.+|.|..||.++|+.+..+........ .... +..++++..+|.++.+|..........
T Consensus 141 p~v~-~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 141 PLVA-N-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEEE-C-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence 2221 2 3566677899999999999999888754332211 1111 246788888999999987654332211
Q ss_pred cccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccC
Q 010871 353 SHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEK 432 (498)
Q Consensus 353 ~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (498)
................+.-.++ ..+..+++++.+|.+..||..++.. .... .... ...|. ..
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~---~~~~~vy~~~~~g~l~a~d~~tG~~---~W~~--~~~~-------~~~p~---~~ 278 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPV---VDGGQVYAVSYQGRVAALDLRSGRV---LWKR--DASS-------YQGPA---VD 278 (377)
T ss_pred ccccCCCCCchhhhhccCCccE---EECCEEEEEEcCCEEEEEECCCCcE---EEee--ccCC-------ccCce---Ee
Confidence 1100000000000000000010 1356788888999999999976522 1111 1111 01111 15
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccceeeecCC-CCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 433 GEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGH-RFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 433 ~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
+..+++++.+|.|+.+|..+++ .+...... ......... .+..|++++.+|.|++++..++
T Consensus 279 ~~~vyv~~~~G~l~~~d~~tG~--~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 279 DNRLYVTDADGVVVALDRRSGS--ELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred CCEEEEECCCCeEEEEECCCCc--EEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 6778888899999999998865 23333211 111222222 3668889999999999998765
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=7.5e-10 Score=109.66 Aligned_cols=191 Identities=14% Similarity=0.160 Sum_probs=127.4
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCC---CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEE-EEeCCC--cEE
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASD---GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA-SSSMDK--TVR 256 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~d---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~s~dg--~v~ 256 (498)
+..+...+...+|+| ++++||.+..+ ..|++||+.+ +.. ..+..+.+.+.+++|+|||+.|+ +.+.++ .|.
T Consensus 185 l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~-g~~-~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 185 ITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLAT-GQR-EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred eecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 445666789999999 89988887654 4799999987 333 33444566677899999998776 444444 588
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCC--cEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC
Q 010871 257 VWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANK--EITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 257 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
+||+.++................|+|++..++++...++ .|.++|+.+++..........+....|+|+|++++.++.
T Consensus 262 ~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 262 VMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHR 341 (417)
T ss_pred EEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEc
Confidence 899988765443333333446789997665666554444 588888887765444345566778899999999988877
Q ss_pred CC---eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC
Q 010871 335 QG---CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG 390 (498)
Q Consensus 335 dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg 390 (498)
++ .|++||+......... .. ...... .++|+++.|+..+.++
T Consensus 342 ~~~~~~i~~~d~~~~~~~~l~--------~~-~~~~~p-----~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 342 EGGGFNIAVMDLDGGGERVLT--------DT-GLDESP-----SFAPNGRMILYATTRG 386 (417)
T ss_pred cCCceEEEEEeCCCCCeEEcc--------CC-CCCCCc-----eECCCCCEEEEEEeCC
Confidence 65 7888887653211111 00 111122 3449999888877665
No 253
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=2.6e-11 Score=113.57 Aligned_cols=282 Identities=15% Similarity=0.205 Sum_probs=185.7
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC------ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCc
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP------KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKT 254 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~------~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~ 254 (498)
+.|.||+..|..++--. +.+-+++++.|.+|++|.+...+ .+..+++.|+.+|.++.|..+.++++++ ||.
T Consensus 729 ~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred ecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 56899999999987665 77889999999999999997532 3566788999999999999998888765 788
Q ss_pred EEEEECCCCcEEEEEe---cCCCeEEEEEEcC-CCcEEEEE-eCCCcEEEEEcCCCcEEEEee------cCCCeEEEEEc
Q 010871 255 VRVWELTKGDCIRVIY---GVSSQLCIRFHPV-NNNFLSVG-NANKEITVFNFSTGRIIKKLV------VDSEVTSMDHD 323 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~---~~~~v~~i~~~~~-~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~------~~~~i~~l~~~ 323 (498)
|.+||.--++.+.... .++.+..+...+. +..++++| +...+|+++|.+.++.+..++ ....+.++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999988777665432 2233333333333 44555555 788999999999988776664 23568899999
Q ss_pred CCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEE-EEcccccc
Q 010871 324 HTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSF-FSVALEIQ 402 (498)
Q Consensus 324 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~i-wd~~~~~~ 402 (498)
+.|+.++++-.+|+|.+.|.+... ..... .........+.. |..+.|+....|.++.+ |..-.+..
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~--vINsw-----rpmecdllqlaa------psdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGK--VINSW-----RPMECDLLQLAA------PSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCc--eeccC-----CcccchhhhhcC------chhHHHHhhcccceeEeeehhcCCee
Confidence 999999999999999999876432 22111 111111111111 66777888888888888 86543311
Q ss_pred ceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC--ccceeeec--CCCCCeEEEEEcCCCC
Q 010871 403 GYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK--HSCVNKLQ--GHRFPVVAVAWNHGEN 478 (498)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~--~~~~~~~~--~h~~~V~~l~~sp~~~ 478 (498)
..+..++.... .|-. .-|.-+++......+.+|.-.... ...+.+++ ...+..++++--|-..
T Consensus 953 -------h~q~kpppepa--hflq----svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~ 1019 (1034)
T KOG4190|consen 953 -------HLQDKPPPEPA--HFLQ----SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNC 1019 (1034)
T ss_pred -------eeccCCCCcch--hhhh----ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccc
Confidence 11111111110 1111 135567777666677777533210 01122222 2346688888888777
Q ss_pred EEEEEeCCCeEEE
Q 010871 479 LLASSDLYGIVIV 491 (498)
Q Consensus 479 ~l~s~~~Dg~i~i 491 (498)
-+..|...|.|.+
T Consensus 1020 afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1020 AFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhccCCCCceee
Confidence 7777888888876
No 254
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.27 E-value=3.8e-11 Score=116.13 Aligned_cols=288 Identities=15% Similarity=0.251 Sum_probs=192.7
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeec-CCCCeEEEEEccCC---CEEEEEeCCCcEEEEECCC
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNG-HSKDVTDFDFSSNN---QYIASSSMDKTVRVWELTK 262 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~s~~~---~~l~s~s~dg~v~iwd~~~ 262 (498)
.+++.++..+| .|+-+|.++.-| +.+-|+..+....+-+.. ..-.|-.+.|++.. ..+++.+.. .-.+|++..
T Consensus 24 ~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAK 100 (1081)
T ss_pred cCcccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc-hhhhhhhhc
Confidence 56788999999 899899998877 667788876666555542 22347778898854 356655544 456898863
Q ss_pred C---cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE-EEEe-ecCCCeEEEEEcCCCCEEEEEcCCC
Q 010871 263 G---DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI-IKKL-VVDSEVTSMDHDHTGQLLFCGDAQG 336 (498)
Q Consensus 263 ~---~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg 336 (498)
. .....+.+|+ .++.+-|+|+....+++++.|-.+..||+++... +... .-......+.|+-....+.+.+...
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence 3 3334445554 7889999999999999999999999999988643 3333 3445677889988777777778888
Q ss_pred eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCc
Q 010871 337 CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPR 416 (498)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 416 (498)
.|++||++.....+.. ..+|...|+.+.|..+. ...+.+++.||+|++||........ .......
T Consensus 181 ~i~vwd~r~gs~pl~s------~K~~vs~vn~~~fnr~~----~s~~~s~~~d~tvkfw~y~kSt~e~-----~~~vtt~ 245 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCS------LKGHVSSVNSIDFNRFK----YSEIMSSSNDGTVKFWDYSKSTTES-----KRTVTTN 245 (1081)
T ss_pred ceEEEeccCCCcceEE------ecccceeeehHHHhhhh----hhhhcccCCCCceeeeccccccccc-----ceecccc
Confidence 9999999866544332 24577778888776432 4568899999999999987542211 1111111
Q ss_pred eeeeEEEEeeeeeccCCCEEEEEeCCCcEEE---------EECCCCCccceeeecCCCCCeEEEEEcCCC----------
Q 010871 417 VHSIRASFCPLLSLEKGEYIVAGSEDSNVYF---------YDLAKPKHSCVNKLQGHRFPVVAVAWNHGE---------- 477 (498)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~i---------wd~~~~~~~~~~~~~~h~~~V~~l~~sp~~---------- 477 (498)
.......+.|. -+|.++.---.+..+.+ |++.++ ..++..+.||.+.|...-|-..+
T Consensus 246 ~piw~~r~~Pf---g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~-~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 246 FPIWRGRYLPF---GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL-NTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred Ccceecccccc---CceeEeccccCCeeeeeccccchhhhhccccC-CcceeeecCcchHHHHHhhhhcccccCCCCccc
Confidence 22222333332 12333322222223333 444333 35789999999999887775322
Q ss_pred CEEEEEeCCCeEEEeecCC
Q 010871 478 NLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 478 ~~l~s~~~Dg~i~iW~~~~ 496 (498)
-.|+|-+.|..+++|-+..
T Consensus 322 fQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 322 FQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeEEEeecCCceEeeeccH
Confidence 2799999999999998763
No 255
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.26 E-value=1.6e-08 Score=109.42 Aligned_cols=253 Identities=14% Similarity=0.186 Sum_probs=151.4
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeec--C------------CCCeEEEEEccCCCEEEEEe-CCCcE
Q 010871 191 TILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNG--H------------SKDVTDFDFSSNNQYIASSS-MDKTV 255 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~--h------------~~~V~~l~~s~~~~~l~s~s-~dg~v 255 (498)
..+++++.++.++++-..++.|.+||... .....+.+ . -.....|++.+++..|+.+. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 45788875677888888889999999864 33333322 1 12357899999887665554 45679
Q ss_pred EEEECCCCcEEEEEec------------------CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec----
Q 010871 256 RVWELTKGDCIRVIYG------------------VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV---- 313 (498)
Q Consensus 256 ~iwd~~~~~~~~~~~~------------------~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---- 313 (498)
+++|+.++. +.++.+ ......++++|+++.++++...++.|++||..++........
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999987764 333321 113457899997777888888889999999877654321110
Q ss_pred -----------CCCeEEEEEcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCc
Q 010871 314 -----------DSEVTSMDHDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGP 381 (498)
Q Consensus 314 -----------~~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~ 381 (498)
-.....++++|+++ ++++-..++.|++||+......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-------------------------------- 775 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR-------------------------------- 775 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE--------------------------------
Confidence 01234566666665 3334444566666665421100
Q ss_pred EEEEEEc----CCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccc
Q 010871 382 VLLTCTQ----DGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSC 457 (498)
Q Consensus 382 ~l~t~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~ 457 (498)
+++++. +....+.+... . .....+ .....+.+. ++|.++++-..++.|++||..++..
T Consensus 776 -~~~gg~~~~~~~l~~fG~~dG----~---g~~~~l---~~P~Gvavd-----~dG~LYVADs~N~rIrviD~~tg~v-- 837 (1057)
T PLN02919 776 -LLAGGDPTFSDNLFKFGDHDG----V---GSEVLL---QHPLGVLCA-----KDGQIYVADSYNHKIKKLDPATKRV-- 837 (1057)
T ss_pred -EEEecccccCcccccccCCCC----c---hhhhhc---cCCceeeEe-----CCCcEEEEECCCCEEEEEECCCCeE--
Confidence 000000 00000000000 0 000000 011122344 4899889989999999999987542
Q ss_pred eeeecC--------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 458 VNKLQG--------------HRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 458 ~~~~~~--------------h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
..+.+ .-.....|+++++|+++++-+.++.|++|+++++
T Consensus 838 -~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 838 -TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred -EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 22211 2235788999999999998889999999999764
No 256
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.25 E-value=2e-09 Score=93.60 Aligned_cols=266 Identities=12% Similarity=0.152 Sum_probs=169.8
Q ss_pred CCcEEEEEcCCCCceeE--Ee-ecCCCCeEEEEEcc---CCC-EEEEEeCCCcEEEEECCCCcEEEEEecCC-------C
Q 010871 209 DGTLTVCTVSDPPKVIK--LL-NGHSKDVTDFDFSS---NNQ-YIASSSMDKTVRVWELTKGDCIRVIYGVS-------S 274 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~--~~-~~h~~~V~~l~~s~---~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-------~ 274 (498)
-|.+.+|++.. .+... .+ ......+..+.|.. +|. .|+-+..+|.|.++..........+.+-+ .
T Consensus 45 ~Gkl~Lys~~d-~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 45 SGKLHLYSLED-MKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred ccceEEEeecc-cccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 46788888875 22211 22 22445677788864 444 56677788999999877555444444331 2
Q ss_pred eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEE--Ee-ecCCCeEEEEEcCCC-CEEEEEcCCCeEEEEEccCCcccc
Q 010871 275 QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIK--KL-VVDSEVTSMDHDHTG-QLLFCGDAQGCIYSISMESHSGAL 350 (498)
Q Consensus 275 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~-~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~ 350 (498)
..++.|.+. +.-++++..+|.+.+.+........ .. .|+...+...|+... +++.+|+.||.+..||++... ..
T Consensus 124 ~lslD~~~~-~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~ 201 (339)
T KOG0280|consen 124 ALSLDISTS-GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF 201 (339)
T ss_pred eeEEEeecc-CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce
Confidence 357788884 4567788888999866655544433 33 478888888887654 588999999999999998433 22
Q ss_pred cccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeec
Q 010871 351 SRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSL 430 (498)
Q Consensus 351 ~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (498)
.. .....|...|.++.-++ |.+.+++||+.|..|++||.+...++... ....+.+. +...+|..
T Consensus 202 i~----~n~kvH~~GV~SI~ss~----~~~~~I~TGsYDe~i~~~DtRnm~kPl~~----~~v~GGVW--Ri~~~p~~-- 265 (339)
T KOG0280|consen 202 IW----HNSKVHTSGVVSIYSSP----PKPTYIATGSYDECIRVLDTRNMGKPLFK----AKVGGGVW--RIKHHPEI-- 265 (339)
T ss_pred ee----ecceeeecceEEEecCC----CCCceEEEeccccceeeeehhcccCcccc----CccccceE--EEEecchh--
Confidence 21 11256777888887664 67889999999999999999854332211 11223333 33555532
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCCcc---ceeeecCCCCCeEEEEEcCCCCEEEEEe-CCCeEE-EeecC
Q 010871 431 EKGEYIVAGSEDSNVYFYDLAKPKHS---CVNKLQGHRFPVVAVAWNHGENLLASSD-LYGIVI-VWKRA 495 (498)
Q Consensus 431 ~~~~~l~~gs~dg~I~iwd~~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~i~-iW~~~ 495 (498)
.+.+++++-.+| .+|-+......+ .....+.|.+-+..-.|.....+|+|++ .|..++ +|-.-
T Consensus 266 -~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 266 -FHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred -hhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeec
Confidence 133344443333 666666654433 3445567887788888866667899876 577755 88543
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=9.9e-08 Score=86.03 Aligned_cols=278 Identities=11% Similarity=0.133 Sum_probs=167.8
Q ss_pred ccccEEEEEEecCCCCEEEEEeC---CCcEEEEEcCCC-CceeE--EeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEE
Q 010871 186 CKAAVTILKFGHMSSDLLAYGAS---DGTLTVCTVSDP-PKVIK--LLNGHSKDVTDFDFSSNNQYIASSSM-DKTVRVW 258 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~~lasg~~---dg~i~iwd~~~~-~~~~~--~~~~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iw 258 (498)
+.+.++-|+|+| +++.|.++-. +|.|..|.++.. +++.. ....-..+-..++++++|++|+++.. -|.|.++
T Consensus 38 ~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 456788899999 8888888754 477888888752 22221 11112223378999999999998875 4789999
Q ss_pred ECCC-Cc---EEEEEecCCC----------eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe----ecCCCeEEE
Q 010871 259 ELTK-GD---CIRVIYGVSS----------QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL----VVDSEVTSM 320 (498)
Q Consensus 259 d~~~-~~---~~~~~~~~~~----------v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~~~~i~~l 320 (498)
-+.. |. .+..+.+... +-...+.|++..++++.-.--.|.+|++..|+....- +.......|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 8864 43 2233333222 5688899966444444334457999999977654332 456778999
Q ss_pred EEcCCCCEEEEEc-CCCeEEEEEccCCcccccccccccccCC-CccceeeEEEeEeeEcCCCcEEEEEEc-CCcEEEEEc
Q 010871 321 DHDHTGQLLFCGD-AQGCIYSISMESHSGALSRSHRHRTTGK-RKCPVTTVQYRSFSLLAGGPVLLTCTQ-DGNLSFFSV 397 (498)
Q Consensus 321 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~s~~~~~l~t~s~-dg~i~iwd~ 397 (498)
.|+|++++..+.+ -+++|.+|..+...+.+........... -.+...+ ..+.++++|++|.++.. ...|.+|.+
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~---aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA---AAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce---eEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 9999999876655 4889999998876444433222211111 1111111 23455699999998764 336778877
Q ss_pred cccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC-CcEEEEECCCCCccceeeec-CCCCCeEEEEEc
Q 010871 398 ALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED-SNVYFYDLAKPKHSCVNKLQ-GHRFPVVAVAWN 474 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-g~I~iwd~~~~~~~~~~~~~-~h~~~V~~l~~s 474 (498)
..... .+.+.......+ ...-.+.+.+ +|++|+++..+ ..|.+|......+.+..... .......||.|.
T Consensus 274 ~~~~g-~L~~~~~~~teg-~~PR~F~i~~-----~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 274 DPDGG-KLELVGITPTEG-QFPRDFNINP-----SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cCCCC-EEEEEEEeccCC-cCCccceeCC-----CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 64322 122211111111 1122234554 89999888876 46888887654433222222 234456677764
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=6.4e-10 Score=96.65 Aligned_cols=197 Identities=14% Similarity=0.178 Sum_probs=137.5
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCC-CCceeEEeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECC-CCcEE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSD-PPKVIKLLNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELT-KGDCI 266 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~-~~~~~ 266 (498)
-.++.|++ .+..++++..+|.+.+-+... ..+.++..++|.-++....|+... +.+++|+.|+.+..||++ .++.+
T Consensus 124 ~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 35778998 888899999999999555443 123344788999999999997643 688999999999999999 44555
Q ss_pred EE-Ee-cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC-CCcEEEEeecCCCeEEEEEcCCCC--EEEEEcCCCeEEEE
Q 010871 267 RV-IY-GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS-TGRIIKKLVVDSEVTSMDHDHTGQ--LLFCGDAQGCIYSI 341 (498)
Q Consensus 267 ~~-~~-~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~i~~l~~~~~~~--~l~~~~~dg~i~i~ 341 (498)
.. .+ ++.+|.++.-+|..+.++++|+.|-.|++||.+ -++++..-...+.|+.+.++|.-. +|+++-.+| .++.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~ 281 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKIL 281 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEE
Confidence 44 23 446889999999889999999999999999998 577887777789999999998643 333333333 4555
Q ss_pred EccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEE-EE
Q 010871 342 SMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLS-FF 395 (498)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~-iw 395 (498)
+......+... .......|.+-...-.|. .....|+||+ .|..|+ +|
T Consensus 282 ~~~~~~~e~~~--~~~s~~~hdSl~YG~DWd-----~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 282 DSSDKVLEFQI--VLPSDKIHDSLCYGGDWD-----SKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred Eecccccchhe--eeeccccccceeeccccc-----cccceeeeeeccccceeeee
Confidence 55443333111 122235566666655553 3345677765 344433 44
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=6.3e-09 Score=103.26 Aligned_cols=199 Identities=15% Similarity=0.140 Sum_probs=124.8
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCC---CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEE-EEeCCC--cEE
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASD---GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA-SSSMDK--TVR 256 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~d---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~s~dg--~v~ 256 (498)
+..|...+...+|+| +|+.|+..+.+ ..|.+|++.+ ++. ..+....+.+....|+|||+.|+ +.+.+| .|.
T Consensus 194 l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 194 LLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred EecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 445667899999999 88888776643 3688999986 433 23333344556799999998876 455555 588
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCC--cEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC
Q 010871 257 VWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANK--EITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 257 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
+||+.+++...............|+|++..++++...+| .|+++|+.+++...............|+|+|+.|+....
T Consensus 271 ~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 271 VMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred EEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEc
Confidence 889988765443322233456789998776766665544 577778877775433322233456789999998877654
Q ss_pred C-C--eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC-Cc--EEEEEcc
Q 010871 335 Q-G--CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD-GN--LSFFSVA 398 (498)
Q Consensus 335 d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d-g~--i~iwd~~ 398 (498)
. + .|+++|+......... .. ...... .++|+|+.++..+.+ +. |.++++.
T Consensus 351 ~~~~~~l~~~dl~tg~~~~lt-------~~--~~~~~p-----~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 351 QDGNFHVAAQDLQRGSVRILT-------DT--SLDESP-----SVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred cCCceEEEEEECCCCCEEEcc-------CC--CCCCCc-----eECCCCCEEEEEEecCCceEEEEEECC
Confidence 3 3 4777877653321111 00 011112 345999988877654 33 5555553
No 260
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.19 E-value=1.6e-08 Score=98.64 Aligned_cols=256 Identities=15% Similarity=0.178 Sum_probs=156.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeE--
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-- 276 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~-- 276 (498)
++..++.++.+|.|..+|..+ ++.+...... +.+.+.-.. .+..++.++.+|.|..||..+|+.+..+.......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAED-GKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCC-CcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 456788888999999999987 6665554422 222221111 24467778889999999999999888876544321
Q ss_pred ----EEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCC-----e---EEEEEcC--CCCEEEEEcCCCeEEEEE
Q 010871 277 ----CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSE-----V---TSMDHDH--TGQLLFCGDAQGCIYSIS 342 (498)
Q Consensus 277 ----~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-----i---~~l~~~~--~~~~l~~~~~dg~i~i~d 342 (498)
..... + ..++.+..++.+..+|.++|+.+........ + ..+.-+| .+..+++++.+|.++.+|
T Consensus 181 ~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 11222 2 3667788889999999999988765432110 0 0010011 246788888899999999
Q ss_pred ccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEE
Q 010871 343 MESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRA 422 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (498)
....+.... ... .. ..... ..+..+++++.+|.|..+|..++.. ..... ......
T Consensus 258 ~~tG~~~W~--~~~---~~----~~~p~-------~~~~~vyv~~~~G~l~~~d~~tG~~---~W~~~-~~~~~~----- 312 (377)
T TIGR03300 258 LRSGRVLWK--RDA---SS----YQGPA-------VDDNRLYVTDADGVVVALDRRSGSE---LWKND-ELKYRQ----- 312 (377)
T ss_pred CCCCcEEEe--ecc---CC----ccCce-------EeCCEEEEECCCCeEEEEECCCCcE---EEccc-cccCCc-----
Confidence 864432211 110 00 01111 3467788888999999999876522 11110 111110
Q ss_pred EEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEE-EEEcCCCCEEEEEeCCCeEEEe
Q 010871 423 SFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVA-VAWNHGENLLASSDLYGIVIVW 492 (498)
Q Consensus 423 ~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~-l~~sp~~~~l~s~~~Dg~i~iW 492 (498)
..+|+. .+..|++++.+|.|+++|..+++ .+..+..+...+.. ..+. + ..|+.++.||.|+.|
T Consensus 313 ~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~--~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 313 LTAPAV---VGGYLVVGDFEGYLHWLSREDGS--FVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred cccCEE---ECCEEEEEeCCCEEEEEECCCCC--EEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 111211 46788999999999999999865 46666655544332 2333 3 457788899999876
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.18 E-value=2.1e-09 Score=95.38 Aligned_cols=198 Identities=19% Similarity=0.308 Sum_probs=146.6
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC---CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP---PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG 263 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~---~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 263 (498)
..+++++.+.+ ....|+.|-.+|++.-+.+... ....+....|...|..+-|+-...++++.+.|..+.---.+.+
T Consensus 68 P~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 68 PSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred CCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence 56789999998 8889999999999998887642 2345566689999999999998899999999988765555665
Q ss_pred cEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC--CcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q 010871 264 DCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST--GRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYS 340 (498)
Q Consensus 264 ~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i 340 (498)
..+..........+..+.- .+...|...|.|.+..+.. -..+.++ .|...+.+++|.+....|++|..|..+.+
T Consensus 147 ~~lg~Y~~~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~ 223 (404)
T KOG1409|consen 147 NRLGGYNFETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIM 223 (404)
T ss_pred CcccceEeeccCCCCceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEE
Confidence 5443332222222222221 1566677777776665533 3445555 58899999999999999999999999999
Q ss_pred EEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 341 ISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
||+....+.... ..+|...|..+... +--+.+++++.||.|.+|+++.
T Consensus 224 wdigg~~g~~~e------l~gh~~kV~~l~~~-----~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 224 WDIGGRKGTAYE------LQGHNDKVQALSYA-----QHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EeccCCcceeee------eccchhhhhhhhhh-----hhheeeeeccCCCeEEEEeccc
Confidence 999766554322 25677777777655 5567899999999999999874
No 262
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.3e-08 Score=94.34 Aligned_cols=289 Identities=16% Similarity=0.255 Sum_probs=169.0
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC-----------CCcEEEE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM-----------DKTVRVW 258 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~-----------dg~v~iw 258 (498)
=+-+.||| -|.||+|--.-| |.+|--.+ -..++.|. |. .|.-+.|||+.+||+|-+. ...++||
T Consensus 213 etyv~wSP-~GTYL~t~Hk~G-I~lWGG~~-f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSP-KGTYLVTFHKQG-IALWGGES-FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecC-CceEEEEEeccc-eeeecCcc-HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 47799999 999999988777 88997665 33344443 54 5889999999999999753 2569999
Q ss_pred ECCCCcEEEEEecC--C-Ce-EEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEc
Q 010871 259 ELTKGDCIRVIYGV--S-SQ-LCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 259 d~~~~~~~~~~~~~--~-~v-~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~ 333 (498)
|+.+|...+.+... . .. .-..|+.++ .+++.-.. ..|.||+..+..++..-. .-..|....|+|.+++||--.
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 99999988888763 2 12 257788754 56665544 578888876533332221 234566667777766655322
Q ss_pred CC-----CeEEEEEccCCc--------------------cccc--c--------------cccccccCCCccceeeEE--
Q 010871 334 AQ-----GCIYSISMESHS--------------------GALS--R--------------SHRHRTTGKRKCPVTTVQ-- 370 (498)
Q Consensus 334 ~d-----g~i~i~d~~~~~--------------------~~~~--~--------------~~~~~~~~~~~~~i~~~~-- 370 (498)
.. ..+.+..+.... +... . ....-......-+|..+.
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk 445 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK 445 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence 11 011121111100 0000 0 000000111222333332
Q ss_pred --EeEeeEcCCCcEEEEEEc---CCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEe---CC
Q 010871 371 --YRSFSLLAGGPVLLTCTQ---DGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGS---ED 442 (498)
Q Consensus 371 --~~~~~~s~~~~~l~t~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs---~d 442 (498)
+..|+|.|.|+.+++-+. ..++.+|.+.+..... .....+ ....+-...|+| .|++++.+. ..
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~---~lVk~~-dk~~~N~vfwsP-----kG~fvvva~l~s~~ 516 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP---SLVKEL-DKKFANTVFWSP-----KGRFVVVAALVSRR 516 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch---hhhhhh-cccccceEEEcC-----CCcEEEEEEecccc
Confidence 235677799998887664 3468888877421111 111111 112222335555 999988764 46
Q ss_pred CcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC------CCeEEEeecCC
Q 010871 443 SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDL------YGIVIVWKRAK 496 (498)
Q Consensus 443 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~------Dg~i~iW~~~~ 496 (498)
|.+.++|+.......+. ...| ...+.+.|.|.|++++|++. |.--+||++.+
T Consensus 517 g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 517 GDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred cceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 89999999852221111 1223 34678999999999999976 44566777653
No 263
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=3.5e-08 Score=91.43 Aligned_cols=274 Identities=15% Similarity=0.217 Sum_probs=172.4
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCC-cEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDG-TLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 261 (498)
-.+|.+.|.-..+.- ++.-++.|..|| .+-|+|..+ ..++.+...-+.|.++..+++|++++.+-....+-+.|++
T Consensus 355 qv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 355 QVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDG--GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred EcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCC--ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 356788899999987 777899999999 899999986 4455666778899999999999999999888889999999
Q ss_pred CCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCC----CcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEc---
Q 010871 262 KGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNAN----KEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGD--- 333 (498)
Q Consensus 262 ~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--- 333 (498)
+|.....-+.. .-++.+.|+| +...++-+--+ ..|+++|+..++..........=.+-+|.|++++|.--+
T Consensus 432 ngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred CCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc
Confidence 99764433333 4577999999 45777766544 469999999988877665555556678999999765433
Q ss_pred ----CCCeEEEEEccCCccccccccc------------ccccCCCccceeeEEE--eEeeEcCCCcEEEEEEcCCcEEEE
Q 010871 334 ----AQGCIYSISMESHSGALSRSHR------------HRTTGKRKCPVTTVQY--RSFSLLAGGPVLLTCTQDGNLSFF 395 (498)
Q Consensus 334 ----~dg~i~i~d~~~~~~~~~~~~~------------~~~~~~~~~~i~~~~~--~~~~~s~~~~~l~t~s~dg~i~iw 395 (498)
.|..+.-+............+. ........-.+..+.. .++-..+..-.-+++-.+|.|.++
T Consensus 511 LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killf 590 (668)
T COG4946 511 LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLF 590 (668)
T ss_pred cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEE
Confidence 2333333322211111110000 0000000000000100 111111222233344444545555
Q ss_pred EccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcC
Q 010871 396 SVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH 475 (498)
Q Consensus 396 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp 475 (498)
...-. ..| ..++-.+-.-|.+.+||+++.+ +..+ ...+.++..|+
T Consensus 591 s~pi~---------------------Gef--------s~yy~gq~~kG~l~~ydletkk---~~e~---k~nvss~rlS~ 635 (668)
T COG4946 591 SYPIH---------------------GEF--------SQYYWGQPEKGRLEKYDLETKK---VEEY---KDNVSSFRLSS 635 (668)
T ss_pred Eeecc---------------------chh--------hhhhcCCCccceEEEEecchhh---HHHH---hcccceEEEcC
Confidence 43210 011 1222234456889999998754 2222 35688999999
Q ss_pred CCCEEEEEeCCCeEEEeecCC
Q 010871 476 GENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 476 ~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
|+..+.. -.||.++++++++
T Consensus 636 D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 636 DGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred CCCEEEE-EeCCeEEEEeccc
Confidence 9998887 6799999999986
No 264
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.17 E-value=2.7e-09 Score=101.39 Aligned_cols=189 Identities=13% Similarity=0.184 Sum_probs=135.4
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCcEEEEee----cCCCeEEEEEc------C--------------CCCEEEEEcCCCeE
Q 010871 283 VNNNFLSVGNANKEITVFNFSTGRIIKKLV----VDSEVTSMDHD------H--------------TGQLLFCGDAQGCI 338 (498)
Q Consensus 283 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----~~~~i~~l~~~------~--------------~~~~l~~~~~dg~i 338 (498)
....+++....||.+++||...++....+. ..+..++..|. | +...++.|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 345688888899999999999998887774 23333444431 1 33478899999999
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCcee
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVH 418 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
.+|++....-... . ....|.+.|+++.+. .+-..|.+++.|+.+..|+.... ...+.......
T Consensus 83 ~~ys~~~g~it~~--~---st~~h~~~v~~~~~~-----~~~~ciyS~~ad~~v~~~~~~~~-----~~~~~~~~~~~-- 145 (541)
T KOG4547|consen 83 LLYSVAGGEITAK--L---STDKHYGNVNEILDA-----QRLGCIYSVGADLKVVYILEKEK-----VIIRIWKEQKP-- 145 (541)
T ss_pred EEEEecCCeEEEE--E---ecCCCCCcceeeecc-----cccCceEecCCceeEEEEecccc-----eeeeeeccCCC--
Confidence 9998865433222 1 137889999999876 67788999999999999998743 22222222111
Q ss_pred eeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCC-----CCEE-EEEeCCCeEEEe
Q 010871 419 SIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHG-----ENLL-ASSDLYGIVIVW 492 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~l-~s~~~Dg~i~iW 492 (498)
..+.++.++||..+++++ +.|.+||+.+ .+.+..|.||.++|+++.|.-+ |.++ .+...+.-+.+|
T Consensus 146 ----~~~sl~is~D~~~l~~as--~~ik~~~~~~--kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 146 ----LVSSLCISPDGKILLTAS--RQIKVLDIET--KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred ----ccceEEEcCCCCEEEecc--ceEEEEEccC--ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 222233345999999887 5799999999 4579999999999999999876 5544 455566778888
Q ss_pred ecCC
Q 010871 493 KRAK 496 (498)
Q Consensus 493 ~~~~ 496 (498)
-++.
T Consensus 218 ~v~~ 221 (541)
T KOG4547|consen 218 VVEK 221 (541)
T ss_pred EEEc
Confidence 7764
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=4.7e-08 Score=96.06 Aligned_cols=240 Identities=13% Similarity=0.079 Sum_probs=137.8
Q ss_pred CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCE--E-EEEeCCC--cEEEEECCCCcEEEEEecCCCeEEEEEEcCC
Q 010871 210 GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQY--I-ASSSMDK--TVRVWELTKGDCIRVIYGVSSQLCIRFHPVN 284 (498)
Q Consensus 210 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~--l-~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~ 284 (498)
+.|.+.|.+. ...+.+......+..-.|+|||+. + ++...+| .|.+.++.+++...............|+|++
T Consensus 165 ~~l~~~d~dG--~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDG--QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCC--CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 3566666654 334445555666778899999974 2 2444444 5777788888655544444455678999988
Q ss_pred CcEEEEEeCCC--c--EEEEEcCCC---cEEEEeecC-CCeEEEEEcCCCCEEEEEc-CCCeEEEE--EccCCccccccc
Q 010871 285 NNFLSVGNANK--E--ITVFNFSTG---RIIKKLVVD-SEVTSMDHDHTGQLLFCGD-AQGCIYSI--SMESHSGALSRS 353 (498)
Q Consensus 285 ~~~l~~g~~dg--~--i~iwd~~~~---~~~~~~~~~-~~i~~l~~~~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~ 353 (498)
..++++...+| . +.+|++..+ +........ ......+|+|+|+.|+..+ .+|...+| +++........
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~- 321 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL- 321 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE-
Confidence 77777664433 2 344676653 332222222 3446789999999777554 46654444 44322111110
Q ss_pred ccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC---CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeec
Q 010871 354 HRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD---GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSL 430 (498)
Q Consensus 354 ~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (498)
.......+.... ++|+|+.|+..+.+ ..|.+||+.++....+. .. ........|+|
T Consensus 322 -----lt~~~~~~~~p~-----wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-----~~--~~~~~~p~wSp---- 380 (428)
T PRK01029 322 -----LTKKYRNSSCPA-----WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-----TS--PENKESPSWAI---- 380 (428)
T ss_pred -----eccCCCCcccee-----ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-----CC--CCCccceEECC----
Confidence 011222333334 45999998877653 36889998765321111 11 11112235665
Q ss_pred cCCCEEEEEeC---CCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCC
Q 010871 431 EKGEYIVAGSE---DSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE 477 (498)
Q Consensus 431 ~~~~~l~~gs~---dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 477 (498)
||++|+.... ...|+++|+..++. ..+....+.+...+|+|-.
T Consensus 381 -DG~~L~f~~~~~g~~~L~~vdl~~g~~---~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 381 -DSLHLVYSAGNSNESELYLISLITKKT---RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred -CCCEEEEEECCCCCceEEEEECCCCCE---EEeecCCCcccCceecCCC
Confidence 9998875543 35688999987653 3333344567778888753
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.16 E-value=1.5e-07 Score=88.25 Aligned_cols=243 Identities=11% Similarity=0.091 Sum_probs=141.7
Q ss_pred EecCCCCEEEEEe----------CCCcEEEEEcCCCCceeEEeecC-------CCCeEEEEEccCCCEEEEEe-C-CCcE
Q 010871 195 FGHMSSDLLAYGA----------SDGTLTVCTVSDPPKVIKLLNGH-------SKDVTDFDFSSNNQYIASSS-M-DKTV 255 (498)
Q Consensus 195 ~sp~~~~~lasg~----------~dg~i~iwd~~~~~~~~~~~~~h-------~~~V~~l~~s~~~~~l~s~s-~-dg~v 255 (498)
++| +++.|+.+. .+..|.+||..+ .+.+..+.-- ...-..++++|||++|+... . +..|
T Consensus 53 ~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECC-CCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 899 677666554 478999999998 7777666531 12234789999999998765 3 6899
Q ss_pred EEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC-CcEE-EEee---c------CCCeEEEEEcC
Q 010871 256 RVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST-GRII-KKLV---V------DSEVTSMDHDH 324 (498)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~-~~~~---~------~~~i~~l~~~~ 324 (498)
.+.|+.+++.+..+.......-..... ...++ -+.||......+.+ |+.. .... . ..+ .+.+
T Consensus 131 ~VvD~~~~kvv~ei~vp~~~~vy~t~e-~~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~ 203 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVPDCYHIFPTAN-DTFFM--HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSN 203 (352)
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEecC-CccEE--EeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEc
Confidence 999999999999888755333333322 22222 22455544433322 2211 1101 1 112 3345
Q ss_pred -CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc----------CCcEE
Q 010871 325 -TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ----------DGNLS 393 (498)
Q Consensus 325 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~----------dg~i~ 393 (498)
+|.++++..+ |.|++.|+......................+.-..+..++++++++.+++... .+.|.
T Consensus 204 ~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 204 KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 7888877777 99999997554332222111111111111122222233555599998888532 24788
Q ss_pred EEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCC-EEEEEe-CCCcEEEEECCCCCccceeee
Q 010871 394 FFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGE-YIVAGS-EDSNVYFYDLAKPKHSCVNKL 461 (498)
Q Consensus 394 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs-~dg~I~iwd~~~~~~~~~~~~ 461 (498)
++|..+... ........ ....+.+++ |++ +|++.. .++.|.++|..+++ .+..+
T Consensus 283 ViD~~t~kv-----i~~i~vG~--~~~~iavS~-----Dgkp~lyvtn~~s~~VsViD~~t~k--~i~~i 338 (352)
T TIGR02658 283 VVDAKTGKR-----LRKIELGH--EIDSINVSQ-----DAKPLLYALSTGDKTLYIFDAETGK--ELSSV 338 (352)
T ss_pred EEECCCCeE-----EEEEeCCC--ceeeEEECC-----CCCeEEEEeCCCCCcEEEEECcCCe--EEeee
Confidence 999875421 11222222 233335665 999 777666 57889999999854 45555
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=4e-08 Score=96.53 Aligned_cols=224 Identities=15% Similarity=0.114 Sum_probs=127.9
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCc--EEEEEeCCC--cEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCE
Q 010871 253 KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNN--FLSVGNANK--EITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQL 328 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~--~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~ 328 (498)
+.|.+.|...+..............-.|+|++.. ++++...+| .|.+.++.+++..............+|+|||+.
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 3567777765554433334455677899998766 333554443 588889988876555555556667899999988
Q ss_pred EEEEcC-CC--eEEE--EEccCCc-ccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccc
Q 010871 329 LFCGDA-QG--CIYS--ISMESHS-GALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEI 401 (498)
Q Consensus 329 l~~~~~-dg--~i~i--~d~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~ 401 (498)
|+.... +| .+++ |++.... +..... .......... .+++|+|+.|+..+ .+|...+|.+....
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-----t~~~~~~~~~-----p~wSPDG~~Laf~s~~~g~~~ly~~~~~~ 314 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRL-----LNEAFGTQGN-----PSFSPDGTRLVFVSNKDGRPRIYIMQIDP 314 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEe-----ecCCCCCcCC-----eEECCCCCEEEEEECCCCCceEEEEECcc
Confidence 776542 33 3333 5554321 111110 0111111222 34559999877665 46766666543211
Q ss_pred cceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC---CcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCC
Q 010871 402 QGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED---SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGEN 478 (498)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d---g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 478 (498)
.+... ... ... ........|+| ||+.|+..+.+ ..|++||+.+++. ..+......+....|+|||+
T Consensus 315 ~g~~~-~~l-t~~-~~~~~~p~wSP-----DG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 315 EGQSP-RLL-TKK-YRNSSCPAWSP-----DGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTSPENKESPSWAIDSL 383 (428)
T ss_pred cccce-EEe-ccC-CCCccceeECC-----CCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCCCCCccceEECCCCC
Confidence 11000 100 011 11112335665 99988876553 3699999988653 33433334577899999999
Q ss_pred EEEEEeC---CCeEEEeecCCC
Q 010871 479 LLASSDL---YGIVIVWKRAKT 497 (498)
Q Consensus 479 ~l~s~~~---Dg~i~iW~~~~~ 497 (498)
.|+.... .+.|.+|++.++
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EEEEEECCCCCceEEEEECCCC
Confidence 8775433 356888888754
No 268
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.14 E-value=4.1e-09 Score=93.62 Aligned_cols=282 Identities=13% Similarity=0.226 Sum_probs=171.7
Q ss_pred cccEEEEEEecCC-CCEEEEEeCCCcEEEEEcCCCCc----------------------------------eeEEe-ecC
Q 010871 187 KAAVTILKFGHMS-SDLLAYGASDGTLTVCTVSDPPK----------------------------------VIKLL-NGH 230 (498)
Q Consensus 187 ~~~V~~v~~sp~~-~~~lasg~~dg~i~iwd~~~~~~----------------------------------~~~~~-~~h 230 (498)
...|+.+.|.++. ...+...+.|.+|++|.+..... +.+.+ .+|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 4578899998732 23667778899999998864110 11222 258
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-cEEEE--EecC------CCeEEEEEEcCCCcEEEEEeCCCcEEEEE
Q 010871 231 SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG-DCIRV--IYGV------SSQLCIRFHPVNNNFLSVGNANKEITVFN 301 (498)
Q Consensus 231 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~--~~~~------~~v~~i~~~~~~~~~l~~g~~dg~i~iwd 301 (498)
.--|.++.++.|+..++++. |=.|.+|+++-- +.... ++.+ .-+++..|+|...++++-.+..|+|++-|
T Consensus 164 tyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 88899999999998888874 667999998843 22222 2222 23568999999889999999999999999
Q ss_pred cCCCcEEEE----ee-------------cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCcc
Q 010871 302 FSTGRIIKK----LV-------------VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKC 364 (498)
Q Consensus 302 ~~~~~~~~~----~~-------------~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 364 (498)
++...+.-. +. .-..|..+.|+++|+++++-+ --+|++||+............+......-+
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHH
Confidence 985432111 11 124688999999999988754 357999999765544332111100000000
Q ss_pred ce--eeEEEe--EeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEe
Q 010871 365 PV--TTVQYR--SFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGS 440 (498)
Q Consensus 365 ~i--~~~~~~--~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs 440 (498)
.+ ...-|. .++++.++.+++||+....+++|++..+........+........ .+ ..-+.+.+++
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~-~~----------~k~~~V~~~g 390 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPR-KV----------LKLRLVSSSG 390 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccc-cc----------ccceeeecCC
Confidence 00 001111 234557778999999999999999776544433333322221111 00 1234444454
Q ss_pred CCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEe
Q 010871 441 EDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVW 492 (498)
Q Consensus 441 ~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW 492 (498)
......++- -.+ .....|...+|+|..+.+|.+... .++|+
T Consensus 391 ~r~~~~~~v---------d~l-df~kkilh~aWhp~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 391 KRKRDEISV---------DAL-DFRKKILHTAWHPKENSIAVAATN-NLYIF 431 (433)
T ss_pred Ccccccccc---------chh-hhhhHHHhhccCCccceeeeeecC-ceEEe
Confidence 443322111 011 112346678899999999888754 56655
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.4e-08 Score=100.65 Aligned_cols=199 Identities=14% Similarity=0.138 Sum_probs=120.0
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCC-C--cEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEE-EeCCCc--EE
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASD-G--TLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS-SSMDKT--VR 256 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~d-g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~s~dg~--v~ 256 (498)
+..+...+.+..|+| +|+.|+..+.+ + .|.+||+.+ ++.. .+....+......|+|||+.|+. .+.+|. |.
T Consensus 213 l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~t-g~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 213 LLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYT-QVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCC-CCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 344566788999999 88888876543 3 588889876 3332 22222334457899999997764 566665 77
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCC--cEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC
Q 010871 257 VWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANK--EITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 257 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
++|+.+++...............|+|++..++++...++ .|.++|+.+++..............+|+|+|+.|+..+.
T Consensus 290 ~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 290 VVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence 778887765443333334567889998776666665554 466678877765433222233445789999998876654
Q ss_pred -CCe--EEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC-Cc--EEEEEcc
Q 010871 335 -QGC--IYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD-GN--LSFFSVA 398 (498)
Q Consensus 335 -dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d-g~--i~iwd~~ 398 (498)
++. |.++|+........ . ... .... ..++|+|+.|+..+.+ +. +.+++..
T Consensus 370 ~~g~~~I~~~dl~~g~~~~l--t-----~~~--~d~~-----ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 370 TNGKFNIARQDLETGAMQVL--T-----STR--LDES-----PSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred cCCceEEEEEECCCCCeEEc--c-----CCC--CCCC-----ceECCCCCEEEEEEecCCceEEEEEECC
Confidence 443 45555543321111 0 000 0011 1345999988766543 33 5555553
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=1.1e-09 Score=115.86 Aligned_cols=189 Identities=13% Similarity=0.183 Sum_probs=144.1
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN-GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 261 (498)
.+.|-..|.++.-+| ...+.+||+.||.|++|.... +..+..+. +....|+.+.|+.+|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~-~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGH-GQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCC-CCceEEecCCCceEEEEeccC-CCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 445567788998898 788999999999999999987 44444443 344889999999999999999999999999987
Q ss_pred CCcEEEEEecCC-CeEEEEEEcCCCcEEEEEe---CCCcEEEEEcCCC--cEEEEeecCCCeEEEEEcCCCCEEEEEcCC
Q 010871 262 KGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGN---ANKEITVFNFSTG--RIIKKLVVDSEVTSMDHDHTGQLLFCGDAQ 335 (498)
Q Consensus 262 ~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~---~dg~i~iwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 335 (498)
.+.....+.|. ....+.|.. ..+++++ .++.+.+||..-. ......-|...++++++-|..++|++|+.+
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred -CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 45555556664 455677764 4555543 5788999996432 222224589999999999999999999999
Q ss_pred CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 336 GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
|.|++||++..+... .-+. + ....+|++++..|.|+||++..
T Consensus 2358 G~v~l~D~rqrql~h------------~~~~---------~-~~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRH------------TFQA---------L-DTREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred CcEEEeehHHHHHHH------------Hhhh---------h-hhhheeeccCcccceEEEEccc
Confidence 999999997543211 1111 1 2467899999999999999974
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.10 E-value=6.4e-08 Score=92.25 Aligned_cols=190 Identities=14% Similarity=0.156 Sum_probs=141.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeec---CCCCeEEEEEc------c--------------CCCEEEEEeCCCcE
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNG---HSKDVTDFDFS------S--------------NNQYIASSSMDKTV 255 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~---h~~~V~~l~~s------~--------------~~~~l~s~s~dg~v 255 (498)
...++|....||.++||+... .+....|.. -++..++..|. | +...|+-|...|.|
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAK-NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred hhheEeecCCCCeEEEEEccC-ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 678999999999999999987 555555442 23334444442 2 22367778889999
Q ss_pred EEEECCCCcEEEEEec--C-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEE
Q 010871 256 RVWELTKGDCIRVIYG--V-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFC 331 (498)
Q Consensus 256 ~iwd~~~~~~~~~~~~--~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~ 331 (498)
.++++..|+....+.. | +.+.++.++. .-..|.+++.|+.+..|+...++.++... ....+.+++++|||..+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999998888873 3 4666776665 56789999999999999999999988885 5677999999999999988
Q ss_pred EcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEE-EEcCCcEEEEEccc
Q 010871 332 GDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT-CTQDGNLSFFSVAL 399 (498)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t-~s~dg~i~iwd~~~ 399 (498)
++ +.|++||+.+..... .+.+|.++|.++.|...---..|.++++ ...+..|.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~-------~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVI-------TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEE-------EecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 75 689999987544322 2589999999999975411112555555 44566688887764
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=1.8e-09 Score=104.76 Aligned_cols=221 Identities=14% Similarity=0.161 Sum_probs=158.6
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
.-.+.||..+|+.+-|+|.....||+++.|-.+..||+.++...+..+..-......+.|+.....+++.+..+.|.+||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 44678999999999999989999999999999999999998888887776556678899988666666677778899999
Q ss_pred CCCC-cEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc--EEEEeecCCCeEEEEEcCCCCEEEEE--c
Q 010871 260 LTKG-DCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR--IIKKLVVDSEVTSMDHDHTGQLLFCG--D 333 (498)
Q Consensus 260 ~~~~-~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~--~ 333 (498)
++.| ..+..++++ ..+..+.|.......+.+.+.||+|+.||..... ..+......+|..-++.|-|.-...- -
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence 9976 567777776 4566788877666788899999999999986543 33444567788888888876532222 2
Q ss_pred CCCeEEEEEccCCccc---ccccccccccCCCccceeeEEEeEee-----EcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 334 AQGCIYSISMESHSGA---LSRSHRHRTTGKRKCPVTTVQYRSFS-----LLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~-----~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
.+..+.+++.+..... .........+.+|...|....|..-. .....-.|+|-+.|..+++|-+...
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 2224444443322211 11223334467888888777665311 1122336999999999999988753
No 273
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=1.4e-09 Score=95.16 Aligned_cols=294 Identities=12% Similarity=0.167 Sum_probs=168.9
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC----ceeEEeecCCC------------CeEEEEEccCC--CEEEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP----KVIKLLNGHSK------------DVTDFDFSSNN--QYIAS 248 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~----~~~~~~~~h~~------------~V~~l~~s~~~--~~l~s 248 (498)
.+.|++|.|.. .|.+|++|...|.|.+|.-.... +....|++|.. .|..+.|..++ ..++.
T Consensus 26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45799999998 99999999999999999876532 23345677753 57888887654 35666
Q ss_pred EeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEE-----EE--e-CCCcEEEEEcCCCcEEEEeecCCCeEEE
Q 010871 249 SSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLS-----VG--N-ANKEITVFNFSTGRIIKKLVVDSEVTSM 320 (498)
Q Consensus 249 ~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-----~g--~-~dg~i~iwd~~~~~~~~~~~~~~~i~~l 320 (498)
.+.|.+|++|.+........-.. ....-..+|-++.+.. .+ + .|..|.. ....+..-.|...|.++
T Consensus 105 stNdktiKlWKiyeknlk~va~n--nls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa----~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAEN--NLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA----KPCRVYANAHPYHINSI 178 (460)
T ss_pred ecCCceeeeeeeecccchhhhcc--ccccccccccCCCcCCHHHhhcccccccceEEEe----ccceeccccceeEeeee
Confidence 77899999999875422111000 0000001111110000 00 0 0101110 11222222477789999
Q ss_pred EEcCCCCEEEEEcCCCeEEEEEccCCccccccccc-ccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 321 DHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHR-HRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 321 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
.+..+...++++ .+-.|.+|++....+....... .........-|++..|++ ...+.+.-.+..|.|++-|++.
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp----~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHP----EMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCH----hHcceEEEecCCCcEEehhhhh
Confidence 999988777765 4778999988765544332110 000111223456666663 2345677788899999999984
Q ss_pred ccc-----ceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCC---------
Q 010871 400 EIQ-----GYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHR--------- 465 (498)
Q Consensus 400 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~--------- 465 (498)
... ..........-......+..+.+.+.++++|+||++-+. -+|+|||+...+ .++.++.-|.
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k-~pikTi~~h~~l~~~l~d~ 331 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK-NPIKTIPMHCDLMDELNDV 331 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc-CCceeechHHHHHHHHHhh
Confidence 211 000000000000111112223444555569999987655 579999998764 3566654442
Q ss_pred ---CCe---EEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 466 ---FPV---VAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 466 ---~~V---~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
..| ..+.|+.|...+.+|+.....-++-.
T Consensus 332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred hhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 233 34678888889999988877777653
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=7e-08 Score=83.11 Aligned_cols=263 Identities=10% Similarity=0.014 Sum_probs=152.6
Q ss_pred CcEEEEEcCCCCceeEEeecCCCCeEEEEEcc-----CCCEEEEEeCCCcEEEEECCCCcEEEEEe-cC-CCeEEEEEEc
Q 010871 210 GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSS-----NNQYIASSSMDKTVRVWELTKGDCIRVIY-GV-SSQLCIRFHP 282 (498)
Q Consensus 210 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~-~~v~~i~~~~ 282 (498)
..+-+|+.-+..+-+..+. ..|.|.| ...+|+.|+.-|...+|...+.+....+- .+ ..+.-+.-..
T Consensus 52 ~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~c 125 (344)
T KOG4532|consen 52 ISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYC 125 (344)
T ss_pred eeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhc
Confidence 3466777765332222222 3355555 34589999999999999998765433332 12 2222111111
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCcEEEEeecC-CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCC
Q 010871 283 VNNNFLSVGNANKEITVFNFSTGRIIKKLVVD-SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGK 361 (498)
Q Consensus 283 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 361 (498)
+...-+..++.|.++++.++..+..-...... -.+.+++++++++++++.+....|..|.++........... ..
T Consensus 126 d~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~----a~ 201 (344)
T KOG4532|consen 126 DLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE----AP 201 (344)
T ss_pred ccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe----cc
Confidence 22334556678888888887654332222111 34889999999999999999999999998765544433111 11
Q ss_pred CccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeE-EEEeeeeeccCC--CEEEE
Q 010871 362 RKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR-ASFCPLLSLEKG--EYIVA 438 (498)
Q Consensus 362 ~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~l~~ 438 (498)
....-.+. +++.....++++++||++.|||++.............. .+-..++ +.|++ .| .+|+.
T Consensus 202 t~D~gF~~-----S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp--~hnGa~R~c~Fsl-----~g~lDLLf~ 269 (344)
T KOG4532|consen 202 TSDHGFYN-----SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRP--HHNGAFRVCRFSL-----YGLLDLLFI 269 (344)
T ss_pred cCCCceee-----eeccCcceEEEEecCCcEEEEEecccccchhhhcccCC--CCCCceEEEEecC-----CCcceEEEE
Confidence 11112223 33478889999999999999999865332222111111 1222222 24554 33 34555
Q ss_pred EeCCCcEEEEECCCCCccceeee-----cCCC-CCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 439 GSEDSNVYFYDLAKPKHSCVNKL-----QGHR-FPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 439 gs~dg~I~iwd~~~~~~~~~~~~-----~~h~-~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.-.-+.+.+.|+++.....+..+ ..|. ..|..-.|+.++..+.+.+.+ .+.-|++.
T Consensus 270 sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 270 SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeecc
Confidence 44557899999998653222221 2233 338888888877766666554 34455544
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=4.4e-08 Score=96.04 Aligned_cols=207 Identities=11% Similarity=0.115 Sum_probs=142.6
Q ss_pred eeecccccEEEEEEecCC-----------CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccC---C-CEE
Q 010871 182 IFDQCKAAVTILKFGHMS-----------SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSN---N-QYI 246 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~-----------~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~---~-~~l 246 (498)
.+..|+..|+.|.|.|.. .-+||++...|.|.|||... ...+..++.|..+|..++|-+. . ..|
T Consensus 50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL-ASVINWLSHSNDSVQDLCWVPARDDSRDVL 128 (1062)
T ss_pred ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh-hhhhhhhcCCCcchhheeeeeccCcchhee
Confidence 356678999999998731 23688888899999999987 6677778889999999999773 3 466
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEecCCC-eEEEEEEcCCCcEEEEEeCCCcEEEEEcCC-------CcEEEEe-ecCC--
Q 010871 247 ASSSMDKTVRVWELTKGDCIRVIYGVSS-QLCIRFHPVNNNFLSVGNANKEITVFNFST-------GRIIKKL-VVDS-- 315 (498)
Q Consensus 247 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~-~~~~-- 315 (498)
++-..-.+|.+|+..+|+.+........ ..|+.+.|-+.+.+..-+..|.+.+-+.-. ++..+.- .|..
T Consensus 129 laIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~ 208 (1062)
T KOG1912|consen 129 LAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA 208 (1062)
T ss_pred EEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh
Confidence 7777778999999999998888765544 457999998888888877888888776531 1221111 1111
Q ss_pred ----------C-------------eEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEe
Q 010871 316 ----------E-------------VTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYR 372 (498)
Q Consensus 316 ----------~-------------i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 372 (498)
. ...++|+|.-+.++...-...+.++|++..........+ . .+..|.
T Consensus 209 ~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie-------r---~~akfv 278 (1062)
T KOG1912|consen 209 HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE-------R---GGAKFV 278 (1062)
T ss_pred hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec-------c---CCccee
Confidence 0 123567787776666666778999998755443222111 1 122233
Q ss_pred EeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 373 SFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 373 ~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
.+-..+....|++...||.+.+|-.+.
T Consensus 279 ~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 279 DVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EeccCCCcceEEEEecCCeEEEEEeec
Confidence 333335567899999999999997654
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=2.6e-09 Score=103.41 Aligned_cols=240 Identities=15% Similarity=0.175 Sum_probs=162.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc---------------EEEEEecCC-CeEEEEEEcCCCcEEEEEeC
Q 010871 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD---------------CIRVIYGVS-SQLCIRFHPVNNNFLSVGNA 293 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~---------------~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~ 293 (498)
......|++|+....+++.|+.||.+++..+.+.. .-+++.+|. .|..+.|+. ..+.|.+...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCC
Confidence 34567899999999999999999999999876532 224556775 566677766 5678888889
Q ss_pred CCcEEEEEcCCCcEEEEe---ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEE
Q 010871 294 NKEITVFNFSTGRIIKKL---VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQ 370 (498)
Q Consensus 294 dg~i~iwd~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 370 (498)
+|.|.+|-+-.|.-...+ ...+.|.+++|+.+|..+.....||.|.+=.++... ..... -.......+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR---IwgKe-----Lkg~~l~hv- 162 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR---IWGKE-----LKGQLLAHV- 162 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce---ecchh-----cchheccce-
Confidence 999999998877654444 245679999999999999999999999886665322 11100 001112233
Q ss_pred EeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeecc-------CCceeeeEEEEeeee-eccCCCEEEEEeCC
Q 010871 371 YRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKL-------APRVHSIRASFCPLL-SLEKGEYIVAGSED 442 (498)
Q Consensus 371 ~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~l~~gs~d 442 (498)
.+++|.+.++.+-..|.+.+||........+...+.... +..+..+..--.|.. .-|+...|+++-.+
T Consensus 163 ----~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 163 ----LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred ----eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 344888888888889999999987543333333332211 111222211111111 11588899999999
Q ss_pred CcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 010871 443 SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486 (498)
Q Consensus 443 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D 486 (498)
|.+.|-.-.+... ++..-. .-.|....|+++|..|+.+|.|
T Consensus 239 Gr~QiMR~eND~~-Pvv~dt--gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 239 GRMQIMRSENDPE-PVVVDT--GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ceehhhhhcCCCC-CeEEec--ccEeecceecCCCcEEEEccCc
Confidence 9999887665432 222222 2568899999999999999875
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.04 E-value=9e-07 Score=94.26 Aligned_cols=286 Identities=12% Similarity=0.179 Sum_probs=173.6
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEE----EcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVC----TVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT- 261 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iw----d~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~- 261 (498)
.+.|.++.|-+ +...|+.+..+|.|.+. +... ..+.....-...|.+++||||+..|+..+.+++|.+-+-.
T Consensus 75 ~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 75 NDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 46799999998 88888889999999999 4443 3333333456789999999999999999989888776421
Q ss_pred --------------C--------CcEEEEEe-------------------------cCCCeEEEEEEcCCCcEEEEEeC-
Q 010871 262 --------------K--------GDCIRVIY-------------------------GVSSQLCIRFHPVNNNFLSVGNA- 293 (498)
Q Consensus 262 --------------~--------~~~~~~~~-------------------------~~~~v~~i~~~~~~~~~l~~g~~- 293 (498)
. |+....|. ....-..++|-.|+ .++++.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG-~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDG-EYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCC-cEEEEEEEE
Confidence 0 00000110 01133567888855 56666553
Q ss_pred --C---CcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcC---CCeEEEEEccCCcccccccccccccCCCcc
Q 010871 294 --N---KEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDA---QGCIYSISMESHSGALSRSHRHRTTGKRKC 364 (498)
Q Consensus 294 --d---g~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 364 (498)
. ..++||+-+ |.....-. ..+--.+++|-|.|++||+... ...|.+|.-+... ....... ......
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr---hgeF~l~-~~~~~~ 305 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR---HGEFTLR-FDPEEE 305 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE---eeeEecC-CCCCCc
Confidence 2 579999965 65544442 3334457899999999988764 3456666543221 1111110 023344
Q ss_pred ceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCc
Q 010871 365 PVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSN 444 (498)
Q Consensus 365 ~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~ 444 (498)
.|..+.|+ +++..|+....|. |.+|-..+- .+-.+....+..........|+| .+...|...+.+|.
T Consensus 306 ~v~~l~Wn-----~ds~iLAv~~~~~-vqLWt~~NY---HWYLKqei~~~~~~~~~~~~Wdp----e~p~~L~v~t~~g~ 372 (928)
T PF04762_consen 306 KVIELAWN-----SDSEILAVWLEDR-VQLWTRSNY---HWYLKQEIRFSSSESVNFVKWDP----EKPLRLHVLTSNGQ 372 (928)
T ss_pred eeeEEEEC-----CCCCEEEEEecCC-ceEEEeeCC---EEEEEEEEEccCCCCCCceEECC----CCCCEEEEEecCCc
Confidence 56556555 9999999977665 999987642 22223333332222222245666 34444555555454
Q ss_pred EEEEECC----CCC----------------c--------------cceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 010871 445 VYFYDLA----KPK----------------H--------------SCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVI 490 (498)
Q Consensus 445 I~iwd~~----~~~----------------~--------------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~ 490 (498)
+..++.. .+. . .+...+. -..+|.+++|++++..+++-..||.|.
T Consensus 373 ~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~ 451 (928)
T PF04762_consen 373 YEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLS 451 (928)
T ss_pred EEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEE
Confidence 4443321 110 0 0011121 246899999999988899999999999
Q ss_pred EeecC
Q 010871 491 VWKRA 495 (498)
Q Consensus 491 iW~~~ 495 (498)
+|...
T Consensus 452 ~~~~~ 456 (928)
T PF04762_consen 452 IYEWD 456 (928)
T ss_pred EEEec
Confidence 99854
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.99 E-value=3.7e-09 Score=111.96 Aligned_cols=216 Identities=13% Similarity=0.227 Sum_probs=148.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee--cCCCeEEE
Q 010871 243 NQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV--VDSEVTSM 320 (498)
Q Consensus 243 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~i~~l 320 (498)
++.+.....++...-|..+.+. +.....-..+.++.-+|.. .+.++|+.||.|++|....++.+..+. ....|+.+
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~-~~~k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS-VMIKHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred cccCCcccCCccccceecccce-eEeecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence 3444445556666666654332 2222333577888888854 677889999999999999998888774 44789999
Q ss_pred EEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE---cCCcEEEEEc
Q 010871 321 DHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT---QDGNLSFFSV 397 (498)
Q Consensus 321 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s---~dg~i~iwd~ 397 (498)
.|+.+|+.+..+..||.+.+|..... ......-|......+.|. +..+++++ .++.+.+||.
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~pk--------~~~s~qchnk~~~Df~Fi-------~s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQASPK--------PYTSWQCHNKALSDFRFI-------GSLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred hhcccCCceeeeccCCceeecccCCc--------ceeccccCCccccceeee-------ehhhhccccCCCCCcccchhc
Confidence 99999999999999999999977511 111124455555666554 35566654 5788999997
Q ss_pred cccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCC
Q 010871 398 ALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE 477 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 477 (498)
-......... ..+.+..+.+ .+. |..++|++|+.+|.|++||++. .+.++.++. ++ ..
T Consensus 2323 l~~~~~s~v~---~~H~~gaT~l--~~~-----P~~qllisggr~G~v~l~D~rq--rql~h~~~~---------~~-~~ 2380 (2439)
T KOG1064|consen 2323 LLPPMNSLVH---TCHDGGATVL--AYA-----PKHQLLISGGRKGEVCLFDIRQ--RQLRHTFQA---------LD-TR 2380 (2439)
T ss_pred ccCcccceee---eecCCCceEE--EEc-----CcceEEEecCCcCcEEEeehHH--HHHHHHhhh---------hh-hh
Confidence 6432222211 1122222222 444 4899999999999999999997 445555544 44 56
Q ss_pred CEEEEEeCCCeEEEeecCCC
Q 010871 478 NLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 478 ~~l~s~~~Dg~i~iW~~~~~ 497 (498)
.++++|+..|.|+||++...
T Consensus 2381 ~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2381 EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred heeeccCcccceEEEEcccc
Confidence 78999999999999998753
No 279
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=8.7e-09 Score=94.74 Aligned_cols=260 Identities=15% Similarity=0.073 Sum_probs=169.1
Q ss_pred ccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCC--CCceeEEeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCC
Q 010871 186 CKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD--PPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM-DKTVRVWELTK 262 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~--~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~~ 262 (498)
|.+.|+.+.-. -.+++.+++.||.++.|.-.. +-+.+..+..|.+.|.+++.+.++.++.|.+. |..++++|+++
T Consensus 8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 57778877765 468999999999999998653 23455667789999999999999999999777 99999999997
Q ss_pred CcEEEEEecCC--CeEEEEEEcCCC--cEEEEEeCCCcEEEEEcCCCcE-EEEe--ecCCCeEEEEEcCCCCEEEEEcCC
Q 010871 263 GDCIRVIYGVS--SQLCIRFHPVNN--NFLSVGNANKEITVFNFSTGRI-IKKL--VVDSEVTSMDHDHTGQLLFCGDAQ 335 (498)
Q Consensus 263 ~~~~~~~~~~~--~v~~i~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~-~~~~--~~~~~i~~l~~~~~~~~l~~~~~d 335 (498)
-..+..++... ...++..++.+. .+.++.-.++.+.++|-....+ ...+ -|..+|.++.+.+.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 76654444332 223333444211 2333345678999999765542 2223 388999999999999999999999
Q ss_pred CeEEEEEccCC----cccccccccc----cccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeE
Q 010871 336 GCIYSISMESH----SGALSRSHRH----RTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTF 407 (498)
Q Consensus 336 g~i~i~d~~~~----~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 407 (498)
|.|..|..... ...+...... ..+...+....++.+. |++..+.+-+.|..|+++++.++..-...-
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-----p~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-----PDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEc-----cccCcccccCcccEEEEEEeccchhhhhhh
Confidence 99999987631 1111111100 1122333444455544 999999999999999999988653211000
Q ss_pred ----------eEeecc-----------CCceeeeE-EEEeeeeeccCCCEEEEEeCCCcEEEEECCCC
Q 010871 408 ----------RCSLKL-----------APRVHSIR-ASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 408 ----------~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
+..... ...+.... .....+.+...|++|+.|+-=| |++.++.++
T Consensus 241 E~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 241 EVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred ccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence 000000 00000000 0111233335899999998876 888888874
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1e-06 Score=86.10 Aligned_cols=212 Identities=11% Similarity=0.029 Sum_probs=124.7
Q ss_pred CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCE-EEEEeCC---CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCC
Q 010871 210 GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQY-IASSSMD---KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNN 285 (498)
Q Consensus 210 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~-l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~ 285 (498)
..|.+-|.+. ...+.+.... .+....|+|||+. ++..+.+ ..|.++|+.+++...............|+|++.
T Consensus 169 ~~l~~~d~dg--~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTL--TYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCC--CceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence 3455545543 3333333333 7788999999984 5544443 468889999887665555445566788999887
Q ss_pred cEEEEEeCC--CcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEc-CCC--eEEEEEccCCcccccccccccccC
Q 010871 286 NFLSVGNAN--KEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGD-AQG--CIYSISMESHSGALSRSHRHRTTG 360 (498)
Q Consensus 286 ~~l~~g~~d--g~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~ 360 (498)
.++++.+.+ ..|.++|+.+++...............|+|+|+.|+..+ ..| .|+++++..... .+.. ..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt----~~ 319 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVV----FH 319 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCc----cC
Confidence 777776555 468888988776443333333344568999998776554 334 466666654322 1111 01
Q ss_pred CCccceeeEEEeEeeEcCCCcEEEEEEcC---------CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeecc
Q 010871 361 KRKCPVTTVQYRSFSLLAGGPVLLTCTQD---------GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLE 431 (498)
Q Consensus 361 ~~~~~i~~~~~~~~~~s~~~~~l~t~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (498)
+. .. ..++|+|+.|+..+.. ..|.+.|+..+....+. ... ......|+|
T Consensus 320 g~----~~-----~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT------~~~--~~~~p~~SP----- 377 (419)
T PRK04043 320 GK----NN-----SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT------ANG--VNQFPRFSS----- 377 (419)
T ss_pred CC----cC-----ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC------CCC--CcCCeEECC-----
Confidence 11 11 1455999998877654 25677777654221111 111 111235665
Q ss_pred CCCEEEEEeCCC---cEEEEECCC
Q 010871 432 KGEYIVAGSEDS---NVYFYDLAK 452 (498)
Q Consensus 432 ~~~~l~~gs~dg---~I~iwd~~~ 452 (498)
||+.|+....++ .+.+.++..
T Consensus 378 DG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 378 DGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCEEEEEEccCCcEEEEEEecCC
Confidence 999887766532 366677764
No 281
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.94 E-value=6.8e-09 Score=88.80 Aligned_cols=211 Identities=12% Similarity=0.136 Sum_probs=125.4
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC-----CCcEEEEE
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM-----DKTVRVWE 259 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~-----dg~v~iwd 259 (498)
.|+++=.+-+.+- .+..+++++.||.+.+++.+......+....-...-.+.+....++.|.++.. -+..++|+
T Consensus 87 ~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~ 165 (319)
T KOG4714|consen 87 KNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANT 165 (319)
T ss_pred ccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeec
Confidence 4444433333343 67789999999999999987532333333221112223333344555554432 23456666
Q ss_pred CCCCcEEE-EEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe--ecCCCeEEEEEcCC-CCEEEEEcCC
Q 010871 260 LTKGDCIR-VIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL--VVDSEVTSMDHDHT-GQLLFCGDAQ 335 (498)
Q Consensus 260 ~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~~~~i~~l~~~~~-~~~l~~~~~d 335 (498)
++..+.+. ..+....+.+++-+|...+++++|+.||.+.+||.+.......+ .|+.+++.+.|+|. +..|+++++|
T Consensus 166 ~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 166 LDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred ccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCC
Confidence 65433221 12223458889999988899999999999999999887443333 48899999999996 4589999999
Q ss_pred CeEEEEEccCCcccccccccccccCCCccceee-EEEeE---------eeEcCCCcEEEEEEcCCcEEEEE
Q 010871 336 GCIYSISMESHSGALSRSHRHRTTGKRKCPVTT-VQYRS---------FSLLAGGPVLLTCTQDGNLSFFS 396 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~---------~~~s~~~~~l~t~s~dg~i~iwd 396 (498)
|.+..||-...-.............-...++.+ +.+.+ -++.--|..|++|+.-+.|++++
T Consensus 246 Gslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 246 GSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 999999876321111110000001111122222 11111 12224578888888888888765
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=5.3e-08 Score=95.47 Aligned_cols=250 Identities=13% Similarity=0.128 Sum_probs=163.4
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCC------------CEEEEEeCCCcEEE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN------------QYIASSSMDKTVRV 257 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~------------~~l~s~s~dg~v~i 257 (498)
-.++.|+| +.+||.|+. ..|.|-|..+ .+.++.+.-|...|+.+.|.|-. -.|+++...|.|.+
T Consensus 18 ~~A~Dw~~--~GLiAygsh-slV~VVDs~s-~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 18 RNAADWSP--SGLIAYGSH-SLVSVVDSRS-LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccCc--cceEEEecC-ceEEEEehhh-hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 56788987 458888875 4688889887 78888999999999999998731 25677778899999
Q ss_pred EECCCCcEEEEEecCC-CeEEEEEEcC---CCcEEEEEeCCCcEEEEEcCCCcEEEEeecC-CCeEEEEEcCC-CCEEEE
Q 010871 258 WELTKGDCIRVIYGVS-SQLCIRFHPV---NNNFLSVGNANKEITVFNFSTGRIIKKLVVD-SEVTSMDHDHT-GQLLFC 331 (498)
Q Consensus 258 wd~~~~~~~~~~~~~~-~v~~i~~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~i~~l~~~~~-~~~l~~ 331 (498)
||...+..+..+..+. ++..++|.+. ...+|++-.....|.+|+..+|+.+.+.... ....|+.++|- .+.+..
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 9999998888887774 5667777653 3356777777889999999999999888644 45566888884 457777
Q ss_pred EcCCCeEEEEEccCCcccccccccccccCCCc----------------cceeeEE----EeEeeEcCCCcEEEEEEcCCc
Q 010871 332 GDAQGCIYSISMESHSGALSRSHRHRTTGKRK----------------CPVTTVQ----YRSFSLLAGGPVLLTCTQDGN 391 (498)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----------------~~i~~~~----~~~~~~s~~~~~l~t~s~dg~ 391 (498)
-+..|.+.+.+.-..+..-...........|. ..-.+.. +..++++|.-+.++-......
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 77788877776533222111111111111111 1111111 123456677666666677788
Q ss_pred EEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 392 LSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 392 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
+.++|++...... ... ...+....+ .+-| .+....|+++-.||.+.||-.+.
T Consensus 254 llv~dle~~~~l~---vvp-ier~~akfv--~vlP---~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 254 LLVFDLEYECCLA---VVP-IERGGAKFV--DVLP---DPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEcchhhceeE---EEE-eccCCccee--Eecc---CCCcceEEEEecCCeEEEEEeec
Confidence 9999987432111 000 011111122 2222 23667899999999999997664
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.93 E-value=8.3e-06 Score=87.07 Aligned_cols=153 Identities=14% Similarity=0.207 Sum_probs=107.5
Q ss_pred EEEEEecCCCCEEEEEeC---CCcEEEEEcCCCCceeEEe----ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 010871 191 TILKFGHMSSDLLAYGAS---DGTLTVCTVSDPPKVIKLL----NGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG 263 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~~---dg~i~iwd~~~~~~~~~~~----~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 263 (498)
.+++|-| .|.+||+... ...|..|.-+. .....| ......|..|.|++|+..|+..-.|. |.+|-..+.
T Consensus 260 ~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNG--LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 260 GALSWRP-SGNLIASSQRLPDRHDVVFFERNG--LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCccCCC-CCCEEEEEEEcCCCcEEEEEecCC--cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 4688999 8999998865 34566666543 222222 24567899999999999999987665 999998876
Q ss_pred cEE--EEEe--cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC----CC----------------cEE-----------
Q 010871 264 DCI--RVIY--GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS----TG----------------RII----------- 308 (498)
Q Consensus 264 ~~~--~~~~--~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~----~~----------------~~~----------- 308 (498)
... +.+. ....+..+.|+|.....|...+.+|.+..+++. .+ ..+
T Consensus 336 HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP 415 (928)
T PF04762_consen 336 HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP 415 (928)
T ss_pred EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC
Confidence 532 2222 234455699999888888888777777665432 11 111
Q ss_pred -----EEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCc
Q 010871 309 -----KKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 309 -----~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~ 347 (498)
..+..+..|.+++|++++..+++-..||.|.+|.+....
T Consensus 416 PPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 416 PPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred chHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 112246789999999999889999999999999865543
No 284
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2.2e-07 Score=88.14 Aligned_cols=230 Identities=11% Similarity=0.216 Sum_probs=152.8
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCC--EEEE-----EeCCCcEEEEECCCC
Q 010871 191 TILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQ--YIAS-----SSMDKTVRVWELTKG 263 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~--~l~s-----~s~dg~v~iwd~~~~ 263 (498)
++..|+. +.. |++=-..+.+.+|+..+.......+ |...|..+.++|.+. .+++ .|.-+.|+||.+...
T Consensus 129 W~~qfs~-dEs-l~arlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSI-DES-LAARLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred ccccccc-chh-hhhhhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 6889987 443 3333335679999998744444444 578899999998743 4443 345567999987733
Q ss_pred cEEEEEe----cCCCeEEEEEEcCCCcEEEEEeCC-----------CcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCE
Q 010871 264 DCIRVIY----GVSSQLCIRFHPVNNNFLSVGNAN-----------KEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQL 328 (498)
Q Consensus 264 ~~~~~~~----~~~~v~~i~~~~~~~~~l~~g~~d-----------g~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~ 328 (498)
..-..+. ....-..+.|.+.+..+|+.++.| .+++++++....+...+...++|.++.|+++++.
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 2211111 112345678888776666655432 3688888885566666778899999999999987
Q ss_pred EEEE--cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC---CcEEEEEccccccc
Q 010871 329 LFCG--DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD---GNLSFFSVALEIQG 403 (498)
Q Consensus 329 l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d---g~i~iwd~~~~~~~ 403 (498)
+++. ..-..+.+||++..- . +.-..++-+++.|+ |.|++|+.++-+ |.|-|||+.+..
T Consensus 285 F~VvyGfMPAkvtifnlr~~~---v-------~df~egpRN~~~fn-----p~g~ii~lAGFGNL~G~mEvwDv~n~K-- 347 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRGKP---V-------FDFPEGPRNTAFFN-----PHGNIILLAGFGNLPGDMEVWDVPNRK-- 347 (566)
T ss_pred EEEEEecccceEEEEcCCCCE---e-------EeCCCCCccceEEC-----CCCCEEEEeecCCCCCceEEEeccchh--
Confidence 6654 456688999886321 1 12334556667776 999999988864 789999997521
Q ss_pred eeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeC------CCcEEEEECCC
Q 010871 404 YLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE------DSNVYFYDLAK 452 (498)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~------dg~I~iwd~~~ 452 (498)
+.... ......-+.|+| ||++|+++.. |+.++||+...
T Consensus 348 -----~i~~~-~a~~tt~~eW~P-----dGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 348 -----LIAKF-KAANTTVFEWSP-----DGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred -----hcccc-ccCCceEEEEcC-----CCcEEEEEeccccEEecCCeEEEEecC
Confidence 11111 112233347777 9999999876 67899999974
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.91 E-value=5.3e-06 Score=72.90 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=86.7
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEcCCCC-ceeEEeec---CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 193 LKFGHMSSDLLAYGASDGTLTVCTVSDPP-KVIKLLNG---HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 193 v~~sp~~~~~lasg~~dg~i~iwd~~~~~-~~~~~~~~---h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
++.+. +|++||.- .|..|.|-..++.. ..+...+- ....=.-++|+||+..||.+...|+|+++|+... .+..
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~ 79 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFV 79 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEE
Confidence 44555 77777765 46667777666532 22233222 2233477999999999999999999999998753 3334
Q ss_pred EecC--------CCeEEEEEEcCC-----CcEEEEEeCCCcEEEEEcCC-----CcEEEEee----cCCCeEEEEEcCCC
Q 010871 269 IYGV--------SSQLCIRFHPVN-----NNFLSVGNANKEITVFNFST-----GRIIKKLV----VDSEVTSMDHDHTG 326 (498)
Q Consensus 269 ~~~~--------~~v~~i~~~~~~-----~~~l~~g~~dg~i~iwd~~~-----~~~~~~~~----~~~~i~~l~~~~~~ 326 (498)
+... ..+..+.|.+.. ...|++-...|.++-|-+.. .+....+. ....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 4321 234455565432 23455556777777776532 22333332 35678888888888
Q ss_pred CEEEEEcC
Q 010871 327 QLLFCGDA 334 (498)
Q Consensus 327 ~~l~~~~~ 334 (498)
++|++|+.
T Consensus 160 ~LLlVgG~ 167 (282)
T PF15492_consen 160 RLLLVGGC 167 (282)
T ss_pred CEEEEecc
Confidence 87777764
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.91 E-value=7.1e-08 Score=82.73 Aligned_cols=196 Identities=15% Similarity=0.178 Sum_probs=118.9
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcC-----------CCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVS-----------DPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~-----------~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
|+.+.++ ....|+++..++.+...... ......+.+..|+++-.+-+.+-.++.++++..||.+.+.
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 5566665 34566777666665554432 2223344455555544444444456789999999999999
Q ss_pred ECCCCcE-EEEEec-CCCeEEEEEEcCCCcEEEEEe-----CCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCC-EE
Q 010871 259 ELTKGDC-IRVIYG-VSSQLCIRFHPVNNNFLSVGN-----ANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQ-LL 329 (498)
Q Consensus 259 d~~~~~~-~~~~~~-~~~v~~i~~~~~~~~~l~~g~-----~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~-~l 329 (498)
+.+.-.. .+.+.. +..-.+.++... .+++.++. .-+..++|+++..+.+..- .....|.+++-+|..+ .+
T Consensus 117 s~~~~~~~~~~i~~~~~~~as~~~~~~-~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHSGSASRKICRH-GNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLV 195 (319)
T ss_pred echHHHhhhhhcccccccccccceeec-ccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEE
Confidence 9775211 111111 111122233321 23443331 1234455555433322211 2334599999998765 67
Q ss_pred EEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
++|+.+|.+.+||.+..... ...+..|+.++..+.|++ .++..|++++.||.+-.||..
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p------~S~l~ahk~~i~eV~FHp----k~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMP------VSLLKAHKAEIWEVHFHP----KNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred EEecCCCeEEEEEcccccch------HHHHHHhhhhhhheeccC----CCchheeEecCCCcEEEEcCC
Confidence 78999999999999865322 223478999999999995 567899999999999999975
No 287
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.88 E-value=1.5e-06 Score=78.91 Aligned_cols=222 Identities=14% Similarity=0.152 Sum_probs=131.2
Q ss_pred CCcEEEEEcCCCCceeEEeecC--CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCc
Q 010871 209 DGTLTVCTVSDPPKVIKLLNGH--SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNN 286 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~ 286 (498)
+|.|..||..+ ++.+....-- .....+. ..+++..+++++.++.|..||..+|+.+..+.....+....... + .
T Consensus 2 ~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~-~ 77 (238)
T PF13360_consen 2 DGTLSALDPRT-GKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVD-G-G 77 (238)
T ss_dssp TSEEEEEETTT-TEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEE-T-T
T ss_pred CCEEEEEECCC-CCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeec-c-c
Confidence 68899999987 6666655421 1222221 23356678888899999999999999999888654332222222 3 4
Q ss_pred EEEEEeCCCcEEEEEcCCCcEEEEe-ecC----CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCC
Q 010871 287 FLSVGNANKEITVFNFSTGRIIKKL-VVD----SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGK 361 (498)
Q Consensus 287 ~l~~g~~dg~i~iwd~~~~~~~~~~-~~~----~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 361 (498)
.+++++.++.|..+|..+|+.+... ... ...........+..++++..++.|..+|..+........... ..
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~---~~ 154 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE---PR 154 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST---T-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC---CC
Confidence 5566668889999999999999884 322 112222333347888888889999999987554432221110 01
Q ss_pred Cccce---eeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEE
Q 010871 362 RKCPV---TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVA 438 (498)
Q Consensus 362 ~~~~i---~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (498)
....+ ..... ...+ .++ .++.++.++.+..+|+.++.. . ..... ..... ... .++..|++
T Consensus 155 ~~~~~~~~~~~~~-~~~~-~~~-~v~~~~~~g~~~~~d~~tg~~---~--w~~~~-~~~~~---~~~-----~~~~~l~~ 217 (238)
T PF13360_consen 155 GSSPISSFSDING-SPVI-SDG-RVYVSSGDGRVVAVDLATGEK---L--WSKPI-SGIYS---LPS-----VDGGTLYV 217 (238)
T ss_dssp SS--EEEETTEEE-EEEC-CTT-EEEEECCTSSEEEEETTTTEE---E--EEECS-S-ECE---CEE-----CCCTEEEE
T ss_pred CCcceeeeccccc-ceEE-ECC-EEEEEcCCCeEEEEECCCCCE---E--EEecC-CCccC---Cce-----eeCCEEEE
Confidence 11111 11111 1111 234 777777787644448886631 1 11111 11111 111 26788888
Q ss_pred EeCCCcEEEEECCCCC
Q 010871 439 GSEDSNVYFYDLAKPK 454 (498)
Q Consensus 439 gs~dg~I~iwd~~~~~ 454 (498)
++.++.|..||+.+++
T Consensus 218 ~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGK 233 (238)
T ss_dssp EETTTEEEEEETTTTE
T ss_pred EeCCCEEEEEECCCCC
Confidence 8899999999999965
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.87 E-value=1.9e-06 Score=84.47 Aligned_cols=256 Identities=13% Similarity=0.157 Sum_probs=153.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEE-EEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeE--
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTD-FDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-- 276 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~-l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~-- 276 (498)
+..++.++.+|.+..+|..+ ++.+....... .+.+ ... .+..++.++.+|.|..+|..+|+.+.......+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAED-GEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCC-CCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 45677788899999999988 66655554322 2221 111 13467778889999999999999998876542211
Q ss_pred ----EEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCC--------eEEEEEcC--CCCEEEEEcCCCeEEEEE
Q 010871 277 ----CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSE--------VTSMDHDH--TGQLLFCGDAQGCIYSIS 342 (498)
Q Consensus 277 ----~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--------i~~l~~~~--~~~~l~~~~~dg~i~i~d 342 (498)
.-... + ..++.++.+|.+..+|..+|+.+........ ...+..+| .+..+++++.+|.++.+|
T Consensus 196 ~~~~sP~v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 196 RGESAPATA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred cCCCCCEEE--C-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 11111 2 2466677899999999999988776532111 11111122 245677777889999998
Q ss_pred ccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEE
Q 010871 343 MESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRA 422 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (498)
..+.+....... . ....+. ..+..++.++.+|.+..+|..++.. ...... .....
T Consensus 273 ~~tG~~~W~~~~-----~----~~~~~~-------~~~~~vy~~~~~g~l~ald~~tG~~---~W~~~~-~~~~~----- 327 (394)
T PRK11138 273 LRSGQIVWKREY-----G----SVNDFA-------VDGGRIYLVDQNDRVYALDTRGGVE---LWSQSD-LLHRL----- 327 (394)
T ss_pred CCCCCEEEeecC-----C----CccCcE-------EECCEEEEEcCCCeEEEEECCCCcE---EEcccc-cCCCc-----
Confidence 765433221110 0 001111 2466788888999999999876522 111110 00000
Q ss_pred EEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEE-EEEcCCCCEEEEEeCCCeEEEeec
Q 010871 423 SFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVA-VAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 423 ~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~-l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
.-+|+. .+.+|+.++.+|.|+++|..+++ .+...+.....+.+ ..+ .+..|+.++.||.|+.+++
T Consensus 328 ~~sp~v---~~g~l~v~~~~G~l~~ld~~tG~--~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 328 LTAPVL---YNGYLVVGDSEGYLHWINREDGR--FVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ccCCEE---ECCEEEEEeCCCEEEEEECCCCC--EEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 111211 35677888999999999999865 34444333222322 222 2457888899999998875
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.87 E-value=4.3e-06 Score=81.95 Aligned_cols=270 Identities=13% Similarity=0.071 Sum_probs=153.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCC--C--------CeE-EEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHS--K--------DVT-DFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~--~--------~V~-~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
+..+++++.+|.|.-+|..+ ++.+....-.. . .+. .+.. .+..++.++.+|.+..+|.++|+.+..
T Consensus 69 ~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADT-GKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCC-CcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 45677777788888888877 55554433211 0 000 1111 345777788899999999999999888
Q ss_pred EecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEE--EcC--CCCEEEEEcCCCeEEEEEcc
Q 010871 269 IYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMD--HDH--TGQLLFCGDAQGCIYSISME 344 (498)
Q Consensus 269 ~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~--~~~--~~~~l~~~~~dg~i~i~d~~ 344 (498)
......+.+.-... + ..++++..++.|..+|..+|+.+..+....+...+. -+| .+..+++++.+|.+..+|..
T Consensus 146 ~~~~~~~~ssP~v~-~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 146 TKVAGEALSRPVVS-D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred ccCCCceecCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 77655443211111 2 356667789999999999999998885432211000 011 13457778889999888876
Q ss_pred CCcccccccccccccCCCc-cceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEE
Q 010871 345 SHSGALSRSHRHRTTGKRK-CPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRAS 423 (498)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (498)
............. ..... .....+...++ -.+..++.++.+|.+..+|..++.. .+. ...... .
T Consensus 224 ~G~~~W~~~~~~~-~~~~~~~~~~~~~~sP~---v~~~~vy~~~~~g~l~ald~~tG~~---~W~--~~~~~~-~----- 288 (394)
T PRK11138 224 QGQLIWQQRISQP-TGATEIDRLVDVDTTPV---VVGGVVYALAYNGNLVALDLRSGQI---VWK--REYGSV-N----- 288 (394)
T ss_pred CChhhheeccccC-CCccchhcccccCCCcE---EECCEEEEEEcCCeEEEEECCCCCE---EEe--ecCCCc-c-----
Confidence 5433222111000 00000 00001111111 1255677788899999999886532 221 111110 0
Q ss_pred EeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCC-CCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 424 FCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHR-FPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 424 ~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
.++ ..+..|+.++.+|.++.+|..+++. +.....-. ....+... .+..|+.++.||.|.+.|..++
T Consensus 289 -~~~---~~~~~vy~~~~~g~l~ald~~tG~~--~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 289 -DFA---VDGGRIYLVDQNDRVYALDTRGGVE--LWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDG 355 (394)
T ss_pred -CcE---EECCEEEEEcCCCeEEEEECCCCcE--EEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 011 1466778888999999999988652 32221111 11122222 2457778889999999887765
No 290
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1e-06 Score=80.43 Aligned_cols=265 Identities=17% Similarity=0.169 Sum_probs=150.5
Q ss_pred EEEEEcCCCCceeEEeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEE
Q 010871 212 LTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQ-YIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSV 290 (498)
Q Consensus 212 i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 290 (498)
+++.+..+ .+....+.+|...|..++|+|... +|..++.+.+|+|.|+++..++..+..+..+.+++|.-++.+++.+
T Consensus 175 v~~l~~~~-fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHD-FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCC-cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEE
Confidence 56665555 344556778889999999999776 7889999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCcEE-EEee---cCCCeEEEEEc------CCCCEEEEEcCCCeEEEEEccCCcccccccccccccC
Q 010871 291 GNANKEITVFNFSTGRII-KKLV---VDSEVTSMDHD------HTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTG 360 (498)
Q Consensus 291 g~~dg~i~iwd~~~~~~~-~~~~---~~~~i~~l~~~------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 360 (498)
|..+|.|.|||++..+-. ..+. ...+|..++.- +.|.+++....+ +..|.............+ .
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle----l 327 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE----L 327 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc----c
Confidence 999999999999865422 2221 22344444432 334444444333 334444332222111111 1
Q ss_pred CCccceeeEEEeEeeEcCCCcE-EEEEEcCCc---EEEEEcc-ccccceeeEeEeecc-C---CceeeeEEEEeeeeecc
Q 010871 361 KRKCPVTTVQYRSFSLLAGGPV-LLTCTQDGN---LSFFSVA-LEIQGYLTFRCSLKL-A---PRVHSIRASFCPLLSLE 431 (498)
Q Consensus 361 ~~~~~i~~~~~~~~~~s~~~~~-l~t~s~dg~---i~iwd~~-~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~ 431 (498)
...+...++++. +..+. |++.-.+.. ++..-.+ ....+.....+.... . .....-.+.+.+ +
T Consensus 328 e~pG~cismqy~-----~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~----~ 398 (463)
T KOG1645|consen 328 EPPGICISMQYH-----GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAV----E 398 (463)
T ss_pred CCCcceeeeeec-----CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecc----c
Confidence 123334444443 22233 333222110 0000000 000111111111111 0 011111111222 3
Q ss_pred CCCEEEE-EeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcC-C-CCEEEEEeCCCeEEEeecCC
Q 010871 432 KGEYIVA-GSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH-G-ENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 432 ~~~~l~~-gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp-~-~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+.++|+. |..-+.+.+||..+. +.+..+.- ..+|.+++... + +.+|++-. |..++|+..+.
T Consensus 399 ~nn~iv~~gd~tn~lil~D~~s~--evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 399 DNNYIVVVGDSTNELILQDPHSF--EVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred cccEEEEecCCcceeEEeccchh--heeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 4555554 445578999999984 45666654 47888887654 2 34666554 66899987654
No 291
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.84 E-value=1.7e-06 Score=94.06 Aligned_cols=203 Identities=11% Similarity=0.132 Sum_probs=132.4
Q ss_pred cEEEEEEecCCCCEEEEE-eCCCcEEEEEcCCCCceeEEeecC-----------------CCCeEEEEEcc-CCCEEEEE
Q 010871 189 AVTILKFGHMSSDLLAYG-ASDGTLTVCTVSDPPKVIKLLNGH-----------------SKDVTDFDFSS-NNQYIASS 249 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg-~~dg~i~iwd~~~~~~~~~~~~~h-----------------~~~V~~l~~s~-~~~~l~s~ 249 (498)
....|++++ +++.|+.+ ..++.|+++|..+ + .+.++.+- -..-..++|+| ++..+++.
T Consensus 625 ~P~GIavd~-~gn~LYVaDt~n~~Ir~id~~~-~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 625 RPQGLAYNA-KKNLLYVADTENHALREIDFVN-E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CCcEEEEeC-CCCEEEEEeCCCceEEEEecCC-C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 357899998 66655444 4567899999875 2 34333210 11236799999 56666777
Q ss_pred eCCCcEEEEECCCCcEEEEEecC----------------CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-
Q 010871 250 SMDKTVRVWELTKGDCIRVIYGV----------------SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV- 312 (498)
Q Consensus 250 s~dg~v~iwd~~~~~~~~~~~~~----------------~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~- 312 (498)
+.++.|++||..++... .+.+. .....++++|++..++++...++.|++||+.++.......
T Consensus 702 ~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg 780 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG 780 (1057)
T ss_pred CCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 78899999999877543 22111 1345789999777677788888999999998765322110
Q ss_pred -------------c--------CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccc------cccCCCccc
Q 010871 313 -------------V--------DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRH------RTTGKRKCP 365 (498)
Q Consensus 313 -------------~--------~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~ 365 (498)
. -.....++++++|+++++-..++.|++||.............. ......-..
T Consensus 781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred ccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence 0 0134688999999988888999999999986543221110000 000111122
Q ss_pred eeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 366 VTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 366 i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
...+ +++++|+.+++-+.++.|++||+.+.
T Consensus 861 P~GI-----avd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 861 PAGL-----ALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred ceEE-----EEeCCCCEEEEECCCCEEEEEECCCC
Confidence 3334 44489999999999999999999765
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=1.6e-06 Score=74.95 Aligned_cols=196 Identities=8% Similarity=0.034 Sum_probs=134.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCeE
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSN-NQYIASSSMDKTVRVWELTKGDCIRVIYGV-SSQL 276 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~ 276 (498)
...+||.||.-|...+|...+.....+....|...|+-+.=.-+ .--+..++.|.++++.+++.+..-..+... -.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 34589999999999999998755556666666665544332222 235667889999999998765433222222 2367
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEEEEcCCCc--EEEEe--ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccc
Q 010871 277 CIRFHPVNNNFLSVGNANKEITVFNFSTGR--IIKKL--VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSR 352 (498)
Q Consensus 277 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~--~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 352 (498)
.+.++++ +.++++.+....|..|.+.... .+... .....-.+..|+.....+|++..||.+.+||++........
T Consensus 163 s~~~snd-~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 163 SLHYSND-PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeEEcCC-CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 8889884 5788888888999999886532 22212 24455678889999999999999999999999876554433
Q ss_pred cccccccCCCccceeeEEEeEeeEcCCC--cEEEEEEcCCcEEEEEcccccc
Q 010871 353 SHRHRTTGKRKCPVTTVQYRSFSLLAGG--PVLLTCTQDGNLSFFSVALEIQ 402 (498)
Q Consensus 353 ~~~~~~~~~~~~~i~~~~~~~~~~s~~~--~~l~t~s~dg~i~iwd~~~~~~ 402 (498)
.... ...|.+.+..+.|+ +.| .+|+..-.-+.+.+.|+++...
T Consensus 242 ~sst--rp~hnGa~R~c~Fs-----l~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 242 ISST--RPHHNGAFRVCRFS-----LYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred hccc--CCCCCCceEEEEec-----CCCcceEEEEecCcceEEEEEcccCce
Confidence 3222 25688899888887 444 3455555566889999987544
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=9.7e-09 Score=91.35 Aligned_cols=180 Identities=13% Similarity=0.182 Sum_probs=122.3
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccc
Q 010871 279 RFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRT 358 (498)
Q Consensus 279 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 358 (498)
+|+-.-..+-++.+.+-.|.+-|+++|-.. .+...+.|.++.|...++++..|+.+|.|..+|++.......... .
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a---~ 293 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA---Q 293 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce---E
Confidence 554322222244557778899999877543 445778899999999999999999999999999986522111110 1
Q ss_pred cCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEE
Q 010871 359 TGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVA 438 (498)
Q Consensus 359 ~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (498)
-.-|.+.|++++... .++++|++.+.+|+|++||.+.-..+. ......++++.. ++.|+.+.+....|++
T Consensus 294 rlyh~Ssvtslq~Lq----~s~q~LmaS~M~gkikLyD~R~~K~~~----~V~qYeGHvN~~--a~l~~~v~~eeg~I~s 363 (425)
T KOG2695|consen 294 RLYHDSSVTSLQILQ----FSQQKLMASDMTGKIKLYDLRATKCKK----SVMQYEGHVNLS--AYLPAHVKEEEGSIFS 363 (425)
T ss_pred EEEcCcchhhhhhhc----cccceEeeccCcCceeEeeehhhhccc----ceeeeecccccc--cccccccccccceEEE
Confidence 145778888887763 368999999999999999998543222 123334444433 4445555567888999
Q ss_pred EeCCCcEEEEECCCCCccceeeecC----CCCCeEEEEEc
Q 010871 439 GSEDSNVYFYDLAKPKHSCVNKLQG----HRFPVVAVAWN 474 (498)
Q Consensus 439 gs~dg~I~iwd~~~~~~~~~~~~~~----h~~~V~~l~~s 474 (498)
++.|...+||.++.+. ++.++.- ....+.+++|.
T Consensus 364 ~GdDcytRiWsl~~gh--Ll~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 364 VGDDCYTRIWSLDSGH--LLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccCeeEEEEEecccCc--eeeccCCCCccccccccceehh
Confidence 9999999999999865 3444432 22345666665
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=3.4e-05 Score=70.29 Aligned_cols=223 Identities=12% Similarity=0.074 Sum_probs=131.3
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee--
Q 010871 236 DFDFSS-NNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-- 312 (498)
Q Consensus 236 ~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-- 312 (498)
++.|.+ ++.++++--..+.|..|+..+++... +.... ...+++...++.+++ +.. +.+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEEeecc
Confidence 578887 67677777778999999998775433 33333 778888843444444 444 455666998886554443
Q ss_pred ----cCCCeEEEEEcCCCCEEEEEcCC--------CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC
Q 010871 313 ----VDSEVTSMDHDHTGQLLFCGDAQ--------GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG 380 (498)
Q Consensus 313 ----~~~~i~~l~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~ 380 (498)
.....+.+++.++|++.++.... |.|+.++.. .+.... ...-...+.+. +++++
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~--------~~~~~~pNGi~-----~s~dg 145 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV--------ADGLGFPNGIA-----FSPDG 145 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE--------EEEESSEEEEE-----EETTS
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE--------ecCcccccceE-----ECCcc
Confidence 23568899999999977765443 567777665 111110 01111233444 44999
Q ss_pred cEEE-EEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCcccee
Q 010871 381 PVLL-TCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVN 459 (498)
Q Consensus 381 ~~l~-t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~ 459 (498)
+.|+ +-+..+.|..|++..................... ...-+++..+|++.++....+.|.+++.. ++ .+.
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g----~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~--~~~ 218 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG----YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK--LLR 218 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC----EEEEEEEBTTS-EEEEEETTTEEEEEETT-SC--EEE
T ss_pred hheeecccccceeEEEeccccccceeeeeeEEEcCCCCc----CCCcceEcCCCCEEEEEcCCCEEEEECCC-cc--EEE
Confidence 8776 5567788888888643221111111112222110 11122333489988888889999999988 44 345
Q ss_pred eecCCCCCeEEEEEc-CCCCEEEEE
Q 010871 460 KLQGHRFPVVAVAWN-HGENLLASS 483 (498)
Q Consensus 460 ~~~~h~~~V~~l~~s-p~~~~l~s~ 483 (498)
.+......+++++|. ++.+.|+..
T Consensus 219 ~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 219 EIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred EEcCCCCCEEEEEEECCCCCEEEEE
Confidence 554444589999994 665555433
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.81 E-value=2.1e-07 Score=84.78 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=108.0
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCc----EEEEEecCCCeEEEEEEcCCCcEEEE--EeCCCcEEEEEcCCCcEE
Q 010871 235 TDFDFSSNNQYIASSSMDKTVRVWELTKGD----CIRVIYGVSSQLCIRFHPVNNNFLSV--GNANKEITVFNFSTGRII 308 (498)
Q Consensus 235 ~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l~~--g~~dg~i~iwd~~~~~~~ 308 (498)
..+..++.+++|+.+..+....++++.... .+...........+.|..++...+++ .+....+.+|....+.+.
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 344556677777777777766666665332 33333344455566666654433332 233445566666558888
Q ss_pred EEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc
Q 010871 309 KKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ 388 (498)
Q Consensus 309 ~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~ 388 (498)
..++|-+.+..++|+||+++|++++.|..|++-....... ... -..+|+.-|..+.. .++..|++++.
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~--Ies----fclGH~eFVS~isl------~~~~~LlS~sG 213 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV--IES----FCLGHKEFVSTISL------TDNYLLLSGSG 213 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc--hhh----hccccHhheeeeee------ccCceeeecCC
Confidence 8889999999999999999999999999999976543211 111 12578888888887 46777999999
Q ss_pred CCcEEEEEcccccc
Q 010871 389 DGNLSFFSVALEIQ 402 (498)
Q Consensus 389 dg~i~iwd~~~~~~ 402 (498)
|++|++||+.++..
T Consensus 214 D~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 214 DKTLRLWDITSGKL 227 (390)
T ss_pred CCcEEEEecccCCc
Confidence 99999999997644
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=2.4e-08 Score=88.95 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=116.9
Q ss_pred EEEccC--CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-----cEEE
Q 010871 237 FDFSSN--NQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-----RIIK 309 (498)
Q Consensus 237 l~~s~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-----~~~~ 309 (498)
++|+-+ +-. ++.+.+-.|-+-|+++|.. ..+...+.|.+..|.. ..+++..|+.+|.|..+|++.+ .+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-cccccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 356532 323 5666777899999998854 3444667888888887 4589999999999999999864 5777
Q ss_pred EeecCCCeEEEEEcC-CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc
Q 010871 310 KLVVDSEVTSMDHDH-TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ 388 (498)
Q Consensus 310 ~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~ 388 (498)
.+-|++.|+++.... ++++|++.+-+|.|.+||++..+.... .....+| |+.....++.+.+....+++++.
T Consensus 294 rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~----V~qYeGH---vN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 294 RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS----VMQYEGH---VNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc----eeeeecc---cccccccccccccccceEEEccC
Confidence 888999999999877 788999999999999999986554321 1112333 45555556666688889999999
Q ss_pred CCcEEEEEcccc
Q 010871 389 DGNLSFFSVALE 400 (498)
Q Consensus 389 dg~i~iwd~~~~ 400 (498)
|...+||.++.+
T Consensus 367 DcytRiWsl~~g 378 (425)
T KOG2695|consen 367 DCYTRIWSLDSG 378 (425)
T ss_pred eeEEEEEecccC
Confidence 999999999854
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.77 E-value=3.1e-06 Score=76.76 Aligned_cols=225 Identities=12% Similarity=0.099 Sum_probs=130.5
Q ss_pred CCcEEEEECCCCcEEEEEecC---CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCE
Q 010871 252 DKTVRVWELTKGDCIRVIYGV---SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQL 328 (498)
Q Consensus 252 dg~v~iwd~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~ 328 (498)
+|+|..||..+|+.+...... ....+..... + ..+++++.++.|..||..+|+.+..+.....+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPD-G-GRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEE-T-TEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEe-C-CEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 688999999999999998753 2223222322 3 456666899999999999999998886544332222 223456
Q ss_pred EEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEe
Q 010871 329 LFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFR 408 (498)
Q Consensus 329 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~ 408 (498)
+++++.++.|+.+|..+....... .... ..... ........ ..+..++++..++.|..+|..++.. ...
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~-~~~~-~~~~~-~~~~~~~~-----~~~~~~~~~~~~g~l~~~d~~tG~~---~w~ 147 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSI-YLTS-SPPAG-VRSSSSPA-----VDGDRLYVGTSSGKLVALDPKTGKL---LWK 147 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEE-EE-S-SCTCS-TB--SEEE-----EETTEEEEEETCSEEEEEETTTTEE---EEE
T ss_pred cccccceeeeEecccCCcceeeee-cccc-ccccc-cccccCce-----EecCEEEEEeccCcEEEEecCCCcE---EEE
Confidence 677778888888886554433221 0100 00000 01111111 2388888998899999999887632 222
Q ss_pred EeeccCCceeee---EEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 010871 409 CSLKLAPRVHSI---RASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDL 485 (498)
Q Consensus 409 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~ 485 (498)
...........+ ......+.. .++ .++.++.++.+..+|+.+++. +.... ...+..+ ...++..|+.++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~d~~tg~~--~w~~~--~~~~~~~-~~~~~~~l~~~~~ 220 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVI-SDG-RVYVSSGDGRVVAVDLATGEK--LWSKP--ISGIYSL-PSVDGGTLYVTSS 220 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEEC-CTT-EEEEECCTSSEEEEETTTTEE--EEEEC--SS-ECEC-EECCCTEEEEEET
T ss_pred eecCCCCCCcceeeecccccceEE-ECC-EEEEEcCCCeEEEEECCCCCE--EEEec--CCCccCC-ceeeCCEEEEEeC
Confidence 222111111111 001122222 144 777777777644449998652 22222 2223331 3456778888889
Q ss_pred CCeEEEeecCCC
Q 010871 486 YGIVIVWKRAKT 497 (498)
Q Consensus 486 Dg~i~iW~~~~~ 497 (498)
+|.|..||++++
T Consensus 221 ~~~l~~~d~~tG 232 (238)
T PF13360_consen 221 DGRLYALDLKTG 232 (238)
T ss_dssp TTEEEEEETTTT
T ss_pred CCEEEEEECCCC
Confidence 999999999886
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.77 E-value=6e-05 Score=68.65 Aligned_cols=194 Identities=10% Similarity=0.102 Sum_probs=123.4
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEc-cCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 010871 192 ILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFS-SNNQYIASSSMDKTVRVWELTKGDCIRVIY 270 (498)
Q Consensus 192 ~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 270 (498)
++.|.+.++.++++--..+.|..|+..+ ... ..+.... ...+.+. +++ .|+.+...+ +.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~-~~~-~~~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT-GEV-EVIDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTT-TEE-EEEESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCC-CeE-EEEecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEee
Confidence 5678875677777777889999999987 332 2232222 6777777 665 555555554 5666999886544443
Q ss_pred c------CCCeEEEEEEcCCCcEEEEEeCC--------CcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEE-EEcCC
Q 010871 271 G------VSSQLCIRFHPVNNNFLSVGNAN--------KEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLF-CGDAQ 335 (498)
Q Consensus 271 ~------~~~v~~i~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~d 335 (498)
. ......+++.+++ ++.++.... |.|..++.. ++.......-...+.++|+|+++.|+ +-+..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 2 1245689999965 455554433 557778877 56555555556789999999998665 56778
Q ss_pred CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 336 GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
+.|+.|+++...................+....+.+ ..+|++.++....+.|.+++..
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v-----D~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV-----DSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE-----BTTS-EEEEEETTTEEEEEETT
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE-----cCCCCEEEEEcCCCEEEEECCC
Confidence 899999987555422211111111111122344444 4899988888889999999976
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.76 E-value=2.7e-08 Score=61.54 Aligned_cols=38 Identities=34% Similarity=0.745 Sum_probs=36.0
Q ss_pred cceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 456 SCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 456 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
+++..+.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=3.9e-07 Score=90.11 Aligned_cols=191 Identities=11% Similarity=0.179 Sum_probs=128.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE
Q 010871 231 SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK 310 (498)
Q Consensus 231 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 310 (498)
...++|++++ +++|+-|+.+|.|++.+....- .+...|++. ...+.++++|+.||+|.|..+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3567777776 5699999999999999976432 333334332 33678999999999999999999999999
Q ss_pred eecCCCeEEEEEcCC-----CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEE
Q 010871 311 LVVDSEVTSMDHDHT-----GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT 385 (498)
Q Consensus 311 ~~~~~~i~~l~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t 385 (498)
+....++.+++++|+ .+.+++|+..| +.++.-+-.... .........++|.++.|. |++++-
T Consensus 109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-----~~v~l~~~eG~I~~i~W~-------g~lIAW 175 (846)
T KOG2066|consen 109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-----DSVVLSEGEGPIHSIKWR-------GNLIAW 175 (846)
T ss_pred EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-----cceeeecCccceEEEEec-------CcEEEE
Confidence 999999999999998 46899999998 777643211111 111235667899999986 888888
Q ss_pred EEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 386 CTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 386 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
++.+| |++||+.....-................-...|. +...|+.|=.| +|+|..++.
T Consensus 176 and~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~------~~~~LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 176 ANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ------DEDRLVIGWGD-SVKICSIKK 234 (846)
T ss_pred ecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec------CCCeEEEecCC-eEEEEEEec
Confidence 77765 8999998653211111111111111111122343 46667776554 588888873
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.75 E-value=3.6e-08 Score=60.96 Aligned_cols=38 Identities=34% Similarity=0.768 Sum_probs=36.2
Q ss_pred ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 222 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
+++..+.+|.+.|.+|+|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56789999999999999999999999999999999997
No 302
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=8e-06 Score=77.65 Aligned_cols=107 Identities=15% Similarity=0.214 Sum_probs=80.2
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeC-----------CCcEEEEEc
Q 010871 234 VTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNA-----------NKEITVFNF 302 (498)
Q Consensus 234 V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~-----------dg~i~iwd~ 302 (498)
=+-+.|||.|.||+|-...| |.+|-=++-..++.+ .|..+.-+.|+| ..++|++=+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHPGVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cCCCceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999998877 889976655555554 466788899999 5677777432 257999999
Q ss_pred CCCcEEEEeec---CCCeE-EEEEcCCCCEEEEEcCCCeEEEEEcc
Q 010871 303 STGRIIKKLVV---DSEVT-SMDHDHTGQLLFCGDAQGCIYSISME 344 (498)
Q Consensus 303 ~~~~~~~~~~~---~~~i~-~l~~~~~~~~l~~~~~dg~i~i~d~~ 344 (498)
++|...+.+.. +..++ -..|+.+++++|.-.. ..|.+|+..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtp 334 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETP 334 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecC
Confidence 99998888853 22333 4679999999998776 457777653
No 303
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=6.4e-06 Score=80.56 Aligned_cols=182 Identities=9% Similarity=0.034 Sum_probs=112.1
Q ss_pred cEEEEEEecCCCC-EEEEEeCC---CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEE-EeCC--CcEEEEECC
Q 010871 189 AVTILKFGHMSSD-LLAYGASD---GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS-SSMD--KTVRVWELT 261 (498)
Q Consensus 189 ~V~~v~~sp~~~~-~lasg~~d---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~s~d--g~v~iwd~~ 261 (498)
.+....|+| +|+ .++..+.+ ..|.++|+.+ ++... +....+.+....|+|||+.|+. .+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~t-g~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYT-GKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCC-CcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 678899999 776 46654443 5688889876 44333 3335556677889999986654 4434 457777887
Q ss_pred CCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCC--cEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCC----
Q 010871 262 KGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANK--EITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQ---- 335 (498)
Q Consensus 262 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d---- 335 (498)
+++...............|+|++..++++....+ .|.+.|+.+++..+....... ...|+|+|+.|+.....
T Consensus 266 ~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 266 TKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred CCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcc
Confidence 7764433222222345689998877777765544 588888887776443322222 24899999988766543
Q ss_pred -----CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC
Q 010871 336 -----GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD 389 (498)
Q Consensus 336 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d 389 (498)
..|++.|+......... . . .... ...|+|+|+.|+..+.+
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~LT-------~-~-~~~~-----~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRRLT-------A-N-GVNQ-----FPRFSSDGGSIMFIKYL 388 (419)
T ss_pred cCCCCcEEEEEECCCCCeEECC-------C-C-CCcC-----CeEECCCCCEEEEEEcc
Confidence 26777776544321111 1 1 1111 23455999988766543
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=4.4e-08 Score=92.39 Aligned_cols=209 Identities=12% Similarity=0.170 Sum_probs=134.7
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-------CcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCC
Q 010871 223 VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK-------GDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNAN 294 (498)
Q Consensus 223 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~-------~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~d 294 (498)
.+..+.||+..|..++-..+.+-+++++.|++|++|.+.. ..|..+++.|. ++..+.|..+ .+.+++ .|
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-lr~i~S--cD 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-LRSIAS--CD 803 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-cceeee--cc
Confidence 3456789999999998877788999999999999999863 24666777664 6778888873 345544 58
Q ss_pred CcEEEEEcCCCcEEEEee---cCCCeEEEEEcCC--CCEEEEE-cCCCeEEEEEccCCcccccccccccccCCCccceee
Q 010871 295 KEITVFNFSTGRIIKKLV---VDSEVTSMDHDHT--GQLLFCG-DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTT 368 (498)
Q Consensus 295 g~i~iwd~~~~~~~~~~~---~~~~i~~l~~~~~--~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 368 (498)
|.|.+||.--++.+..+. ..+.+..+..-++ ...++.| +...+|+++|.+... .....+.....+....+.+
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce--~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE--WTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc--ceeeEEeccCCCCchheeE
Confidence 999999988887776542 2233333333333 3344444 778899999876433 2222222112334445566
Q ss_pred EEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEE-
Q 010871 369 VQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYF- 447 (498)
Q Consensus 369 ~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~i- 447 (498)
+... +.|++++++-..|.|.+.|.+++..- .....+.+..-.++ .|..+.++....|.++.+
T Consensus 882 iaVa-----~~GN~lAa~LSnGci~~LDaR~G~vI-----------Nswrpmecdllqla-apsdq~L~~saldHslaVn 944 (1034)
T KOG4190|consen 882 IAVA-----DKGNKLAAALSNGCIAILDARNGKVI-----------NSWRPMECDLLQLA-APSDQALAQSALDHSLAVN 944 (1034)
T ss_pred EEec-----cCcchhhHHhcCCcEEEEecCCCcee-----------ccCCcccchhhhhc-CchhHHHHhhcccceeEee
Confidence 6555 89999999999999999999865210 00001111110000 135667777777888888
Q ss_pred EECCCC
Q 010871 448 YDLAKP 453 (498)
Q Consensus 448 wd~~~~ 453 (498)
|..-.+
T Consensus 945 Whaldg 950 (1034)
T KOG4190|consen 945 WHALDG 950 (1034)
T ss_pred ehhcCC
Confidence 876553
No 305
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.69 E-value=0.0001 Score=63.87 Aligned_cols=141 Identities=10% Similarity=0.082 Sum_probs=94.8
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCceeEE-eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCe
Q 010871 197 HMSSDLLAYGASDGTLTVCTVSDPPKVIKL-LNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQ 275 (498)
Q Consensus 197 p~~~~~lasg~~dg~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v 275 (498)
++...+++.|+..+.+.--|..+ +..... .-+ ..|.+-+.- -|++++.|+..|.+.+.++.+|...+.+...+.+
T Consensus 20 ~dskT~v~igSHs~~~~avd~~s-G~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQS-GNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred cCCceEEEEecCCceEEEecCCC-CcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 34567888888888888888887 444332 222 223332222 3668999999999999999999888888776665
Q ss_pred EEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeE-EEEEcCCCCEEEEEcCCCeEEEE
Q 010871 276 LCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVT-SMDHDHTGQLLFCGDAQGCIYSI 341 (498)
Q Consensus 276 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~dg~i~i~ 341 (498)
-+-+-...+..++.+|+.|++.+..|.++..++.+.+..+.+. +-+..+-...|.++...|.+.-.
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAV 162 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEE
Confidence 5433333356799999999999999999999998876544432 33444523334444445544433
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=9.5e-07 Score=87.49 Aligned_cols=188 Identities=14% Similarity=0.152 Sum_probs=130.5
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
.+.++|++++ +.+|+.|..+|.|++.+... .. .+...|+.. ..+|.+++|||.||+|.|-.+.+.+..
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCC--cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 4678899985 58999999999999999874 33 444456554 567999999999999999999999999
Q ss_pred EEEecCCCeEEEEEEcC----CCcEEEEEeCCCcEEEEEcC---CCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEE
Q 010871 267 RVIYGVSSQLCIRFHPV----NNNFLSVGNANKEITVFNFS---TGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 267 ~~~~~~~~v~~i~~~~~----~~~~l~~g~~dg~i~iwd~~---~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
.++..+.++.+++++|+ ....+++|+..| +.++.-+ ....+..-...++|.++.|. |+++|-++.+| |+
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 99999999999999996 346788888888 7666532 11222122467899999995 67888888777 79
Q ss_pred EEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 340 SISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
+||............+.. .......-..+.| .+...|+.| +..+|++..++
T Consensus 183 vyd~~~~~~l~~i~~p~~-~~R~e~fpphl~W------~~~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQ-SVRPELFPPHLHW------QDEDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCC-CCCcccCCCceEe------cCCCeEEEe-cCCeEEEEEEe
Confidence 999876543322221110 0111111122333 234445544 55589998887
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.65 E-value=4.1e-07 Score=91.04 Aligned_cols=148 Identities=22% Similarity=0.343 Sum_probs=122.5
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC---------CCcEEEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM---------DKTVRVWE 259 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~---------dg~v~iwd 259 (498)
.|+-++. +++++.+|...|+|.+-|..+ .+.++++..|++.|.++.. .|+.|++||. |..|+|||
T Consensus 179 ~v~imR~---Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYD 252 (1118)
T KOG1275|consen 179 GVTIMRY---NNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYD 252 (1118)
T ss_pred ceEEEEe---cCcEEEeecccceEEeecCCc-Cceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhh
Confidence 4666665 668999999999999999998 8999999999999988776 4789999875 56789999
Q ss_pred CCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEc---CCCc-EEEEe-ecCCCeEEEEEcCCCCEEEEEcC
Q 010871 260 LTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNF---STGR-IIKKL-VVDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 260 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~---~~~~-~~~~~-~~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
++..+.+.-+..+-...-+.|+|.=...+++++..|...+.|. .... .+..+ .....+..++++++++.++.|..
T Consensus 253 LRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 253 LRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred hhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence 9988887777777667778999987788999999999999993 3321 12222 34556999999999999999999
Q ss_pred CCeEEEEE
Q 010871 335 QGCIYSIS 342 (498)
Q Consensus 335 dg~i~i~d 342 (498)
+|.|.+|.
T Consensus 333 ~g~v~~wa 340 (1118)
T KOG1275|consen 333 EGHVNLWA 340 (1118)
T ss_pred cCcEeeec
Confidence 99999997
No 308
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.62 E-value=4.7e-05 Score=71.28 Aligned_cols=147 Identities=15% Similarity=0.166 Sum_probs=117.0
Q ss_pred EecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCC-cEEEEECCCCcEEEEEecCC
Q 010871 195 FGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDK-TVRVWELTKGDCIRVIYGVS 273 (498)
Q Consensus 195 ~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~ 273 (498)
|++.+|+++|..|. |...|.+... +-.+ --+|.+.|.-..+.-++.-++.|..|| .+-|+|.++++..+....-+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~-~~~i--qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWD-GYSI--QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCC-CeeE--EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCcc
Confidence 55667889998886 5667766554 2222 235778899888888888899999999 89999999998877777778
Q ss_pred CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCC----eEEEEEccCC
Q 010871 274 SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQG----CIYSISMESH 346 (498)
Q Consensus 274 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg----~i~i~d~~~~ 346 (498)
.+.++..+++ +..++++.....|.+.|+.++.....- ....-|+.++|+|+++++|-+--+| .|+++|+...
T Consensus 403 ~I~av~vs~d-GK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 403 NIEAVKVSPD-GKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ceEEEEEcCC-CcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 9999999995 467888888899999999999865433 3557799999999999999887776 5889988653
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.61 E-value=0.00011 Score=66.73 Aligned_cols=236 Identities=14% Similarity=0.156 Sum_probs=138.5
Q ss_pred EEEEEecCCCCEEEEEeCCCc-EEEEEcCCCCceeEEeecCCCCe--EEEEEccCCCEEEEEe-----CCCcEEEEECC-
Q 010871 191 TILKFGHMSSDLLAYGASDGT-LTVCTVSDPPKVIKLLNGHSKDV--TDFDFSSNNQYIASSS-----MDKTVRVWELT- 261 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~~dg~-i~iwd~~~~~~~~~~~~~h~~~V--~~l~~s~~~~~l~s~s-----~dg~v~iwd~~- 261 (498)
..++.+|..+..+|.+-.-|+ ..+||..+ +.....+....+.- -.-.|++||++|++.- ..|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~-g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRT-GQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCC-CceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 467777766667777777665 56788887 55554444322221 1367999999999863 35789999999
Q ss_pred CCcEEEEEecCC-CeEEEEEEcCCCcEEEEEe-----------------CCCcEEEEEcCCCcEEEEee-----cCCCeE
Q 010871 262 KGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGN-----------------ANKEITVFNFSTGRIIKKLV-----VDSEVT 318 (498)
Q Consensus 262 ~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~-----------------~dg~i~iwd~~~~~~~~~~~-----~~~~i~ 318 (498)
+.+.+..+..+. ..-.+.+.|++..+++.-+ .+-.+.+.|..+|+.+.+.. +.-.|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 567777777665 5667888996644444321 12356667777888777643 445788
Q ss_pred EEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 319 SMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 319 ~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
.+++.++|..++..-..|.-. ..-..++.-..++.+......
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~--------------------------------------~~~PLva~~~~g~~~~~~~~p 208 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPG--------------------------------------DAPPLVALHRRGGALRLLPAP 208 (305)
T ss_pred eEEecCCCcEEEEEecCCCCC--------------------------------------ccCCeEEEEcCCCcceeccCC
Confidence 888888776554432222100 112233333344445554443
Q ss_pred ccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeC-CCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCC
Q 010871 399 LEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE-DSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE 477 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 477 (498)
... ...+..-+.++ +++ .++.++++.+- .+.+.+||..++.. +.... -..+..++-.+++
T Consensus 209 ~~~--------~~~l~~Y~gSI--a~~-----~~g~~ia~tsPrGg~~~~~d~~tg~~--~~~~~--l~D~cGva~~~~~ 269 (305)
T PF07433_consen 209 EEQ--------WRRLNGYIGSI--AAD-----RDGRLIAVTSPRGGRVAVWDAATGRL--LGSVP--LPDACGVAPTDDG 269 (305)
T ss_pred hHH--------HHhhCCceEEE--EEe-----CCCCEEEEECCCCCEEEEEECCCCCE--eeccc--cCceeeeeecCCc
Confidence 210 00112222222 333 37877765554 57899999998653 33222 2346677777666
Q ss_pred CEEEEEeC
Q 010871 478 NLLASSDL 485 (498)
Q Consensus 478 ~~l~s~~~ 485 (498)
+++|.+.
T Consensus 270 -f~~ssG~ 276 (305)
T PF07433_consen 270 -FLVSSGQ 276 (305)
T ss_pred -eEEeCCC
Confidence 6666654
No 310
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.58 E-value=8.3e-07 Score=81.00 Aligned_cols=156 Identities=17% Similarity=0.234 Sum_probs=109.2
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc---eeEEeecCCCCeEEEEEccCCCEEE---EEeCCCcEEEEECCC
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK---VIKLLNGHSKDVTDFDFSSNNQYIA---SSSMDKTVRVWELTK 262 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~~~~~l~---s~s~dg~v~iwd~~~ 262 (498)
.+..+..++ ++++||.+..+....++++....+ +..... -...-+++.|..+..... .++....+.+|....
T Consensus 64 a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 64 APALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 345566677 889999999888888888775333 111211 122234444444443333 344556677777776
Q ss_pred CcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe--ecCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q 010871 263 GDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL--VVDSEVTSMDHDHTGQLLFCGDAQGCIYS 340 (498)
Q Consensus 263 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~dg~i~i 340 (498)
+.+.-.+.+-+-+..++++|++ .+++++..|..|+|-.....-.+..+ +|..-|..+++-++ ..|++|+.|++|++
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred cCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 6655555555677899999955 89999999999999888766666655 68889999998765 56999999999999
Q ss_pred EEccCCcc
Q 010871 341 ISMESHSG 348 (498)
Q Consensus 341 ~d~~~~~~ 348 (498)
||+.....
T Consensus 220 Wd~~sgk~ 227 (390)
T KOG3914|consen 220 WDITSGKL 227 (390)
T ss_pred EecccCCc
Confidence 99976543
No 311
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.57 E-value=2.2e-05 Score=74.06 Aligned_cols=251 Identities=14% Similarity=0.172 Sum_probs=152.9
Q ss_pred EEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCC
Q 010871 215 CTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNAN 294 (498)
Q Consensus 215 wd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d 294 (498)
|...+ ......+....-++..++|||.|.+|++....| |.+|.-..+..+..+ .|..+..+.|+| .+.+|.+=+..
T Consensus 17 ~~~~s-~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~-~~~~V~~~~fSP-~~kYL~tw~~~ 92 (561)
T COG5354 17 WNSQS-EVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF-RHPDVKYLDFSP-NEKYLVTWSRE 92 (561)
T ss_pred ecCcc-ccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeee-ecCCceecccCc-ccceeeeeccC
Confidence 44433 444444555677899999999999999887765 999998877744444 456788899999 45777764432
Q ss_pred ---------------CcEEEEEcCCCcEEEEeecC-CC--eE-EEEEcCCCCEEEEEcCCCeEEEEEccCCccccccccc
Q 010871 295 ---------------KEITVFNFSTGRIIKKLVVD-SE--VT-SMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHR 355 (498)
Q Consensus 295 ---------------g~i~iwd~~~~~~~~~~~~~-~~--i~-~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 355 (498)
..+.+||+.+|..+..+... .+ .+ -+.|+-+..+++-. ....++++++. ..-.. .
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t-~n~~~---~- 166 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEIT-DNIEE---H- 166 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecC-Ccccc---C-
Confidence 35999999999999988422 22 44 67788887766544 34568888862 21111 1
Q ss_pred ccccCCCccceeeEEEeEeeEcCCC--cEEEE-----EEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeee
Q 010871 356 HRTTGKRKCPVTTVQYRSFSLLAGG--PVLLT-----CTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLL 428 (498)
Q Consensus 356 ~~~~~~~~~~i~~~~~~~~~~s~~~--~~l~t-----~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (498)
..+. +....+..++++|.+ ..|+. .+.++.+++|.+..... ...... ..+..+...|.+
T Consensus 167 ----p~~~--lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~--l~tk~l----fk~~~~qLkW~~-- 232 (561)
T COG5354 167 ----PFKN--LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV--LVTKNL----FKVSGVQLKWQV-- 232 (561)
T ss_pred ----chhh--ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe--eeeeee----EeecccEEEEec--
Confidence 1111 112233445555653 33443 35677888888863211 111111 112233345554
Q ss_pred eccCCCEEEEEe-----------CCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEe--CCCeEEEeecC
Q 010871 429 SLEKGEYIVAGS-----------EDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSD--LYGIVIVWKRA 495 (498)
Q Consensus 429 ~~~~~~~l~~gs-----------~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~--~Dg~i~iW~~~ 495 (498)
.|.+|++-- ....++|+++.... +.....-.++|...+|.|.++.+++.+ .+-.+.++++.
T Consensus 233 ---~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 233 ---LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred ---CCceEEEEEEEeeecccceeccceEEEEeecccc---cceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence 666654321 13468899988422 222225578999999999988766554 55666666654
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.57 E-value=4.1e-05 Score=79.70 Aligned_cols=276 Identities=11% Similarity=0.126 Sum_probs=152.7
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIR 267 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 267 (498)
+.|.++.|.- ++.-++.+..+|.|.+-|..+ ........-...|.+++|+||.+.++..+.++++.+-+- +-..+.
T Consensus 69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et--~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLA-DTNSICVITALGDIILVDPET--LELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIA 144 (1265)
T ss_pred cceEEEEEec-ccceEEEEecCCcEEEEcccc--cceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchh
Confidence 5799999998 888888889999999998775 223333345688999999999999999988887766442 122211
Q ss_pred EE------ecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-cEEEEeecCCCeEEEEEcCCCCEEEEE-----cCC
Q 010871 268 VI------YGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-RIIKKLVVDSEVTSMDHDHTGQLLFCG-----DAQ 335 (498)
Q Consensus 268 ~~------~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~-----~~d 335 (498)
.. ...+....+-|-... .-+-|+ .|.....+.... +........+.-++++|--+|+++++. ...
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrke--Tqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKE--TQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred ccccccccccccccceecccccc--eeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 11 112233344443211 111121 111111111110 001111123445679999999999883 333
Q ss_pred CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE---cCCcEEEEEccccccceeeEeEeec
Q 010871 336 GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT---QDGNLSFFSVALEIQGYLTFRCSLK 412 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s---~dg~i~iwd~~~~~~~~~~~~~~~~ 412 (498)
..|++||-+. .+.... ......-.++.|. |.|..+++.. .|+.|.+|.-+.-..+.........
T Consensus 222 RkirV~drEg---~Lns~s-----e~~~~l~~~LsWk-----Psgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d 288 (1265)
T KOG1920|consen 222 RKIRVYDREG---ALNSTS-----EPVEGLQHSLSWK-----PSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD 288 (1265)
T ss_pred eeEEEecccc---hhhccc-----Ccccccccceeec-----CCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence 7899998752 111110 1122223345555 8999888864 4567888886643333222222221
Q ss_pred cCCceeeeEEEEeeeeeccCCCEEEE---EeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 010871 413 LAPRVHSIRASFCPLLSLEKGEYIVA---GSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE-NLLASSDLYGI 488 (498)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~l~~---gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~Dg~ 488 (498)
... .-...|+. ++..|++ ......|++|-+.+-.+-....+.-..... +.|+|.. ..|..-..+|.
T Consensus 289 e~~---ve~L~Wns-----~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~ 358 (1265)
T KOG1920|consen 289 EKE---VEELAWNS-----NSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQ 358 (1265)
T ss_pred ccc---hheeeecC-----CCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCc
Confidence 111 22335655 8888887 444556999999886544344443332222 6777643 23333335555
Q ss_pred EEEee
Q 010871 489 VIVWK 493 (498)
Q Consensus 489 i~iW~ 493 (498)
..+++
T Consensus 359 ~~v~~ 363 (1265)
T KOG1920|consen 359 RLVRD 363 (1265)
T ss_pred EEEEE
Confidence 55443
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=1.1e-07 Score=94.53 Aligned_cols=191 Identities=14% Similarity=0.197 Sum_probs=134.1
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCC--cEEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDK--TVRV 257 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg--~v~i 257 (498)
...|..|...-+|++|+- +.+.|+.|+..|.|+++++.+ +.......+|..+|+-+.=+.+|..+++.+.-. -..+
T Consensus 1094 w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred chhhhccccceeeEEeec-CCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 345777889999999998 889999999999999999998 777888899999999999999998777655433 4689
Q ss_pred EECCC-CcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-e----cCCCeEEEEEcCCCCEEEE
Q 010871 258 WELTK-GDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-V----VDSEVTSMDHDHTGQLLFC 331 (498)
Q Consensus 258 wd~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~----~~~~i~~l~~~~~~~~l~~ 331 (498)
|++.. +...+++.. -.++.|+.. ...-+.|+......+||+.++..+.++ . ....-++..|+|+..+++-
T Consensus 1172 W~~~s~~~~~Hsf~e---d~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE---DKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred hccccccCccccccc---cceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 99863 344444433 346777764 334455666678999999999877664 1 2334478889999887763
Q ss_pred EcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 332 GDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
|| .+||++...... .. ..... -..-.|+ |.|..++.-+. |||+++
T Consensus 1248 ---dG--vLWDvR~~~aIh--~F-----D~ft~-~~~G~FH-----P~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1248 ---DG--VLWDVRIPEAIH--RF-----DQFTD-YGGGGFH-----PSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred ---Cc--eeeeeccHHHHh--hh-----hhhee-ccccccc-----CCCceEEeech-----hhhhHH
Confidence 44 478887542111 10 11110 0111233 88988888664 899885
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=1.1e-06 Score=87.26 Aligned_cols=147 Identities=14% Similarity=0.206 Sum_probs=96.3
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVI 269 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 269 (498)
+++++|+| ..-.||.|-.-|.+.+|...+ .+.......|..+|..+.|+++|..|+|+..-|.|.+|....-..+...
T Consensus 62 atSLCWHp-e~~vLa~gwe~g~~~v~~~~~-~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~ 139 (1416)
T KOG3617|consen 62 ATSLCWHP-EEFVLAQGWEMGVSDVQKTNT-TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTS 139 (1416)
T ss_pred hhhhccCh-HHHHHhhccccceeEEEecCC-ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccc
Confidence 57799999 888899999999999999887 5555566679999999999999999999999999999987632222221
Q ss_pred --ecC---C--CeEEEEEEcCCCc-----EEEEEeCCCcEE-EEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCC
Q 010871 270 --YGV---S--SQLCIRFHPVNNN-----FLSVGNANKEIT-VFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQG 336 (498)
Q Consensus 270 --~~~---~--~v~~i~~~~~~~~-----~l~~g~~dg~i~-iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg 336 (498)
..| . ...|....+++.. ..++.+.+..+- .++.+.........+. -.|+|..++.++.+|
T Consensus 140 ~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ks-------gv~~g~~F~~~~~~G 212 (1416)
T KOG3617|consen 140 NIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKS-------GVPKGTEFLFAGKSG 212 (1416)
T ss_pred hhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccccc-------CCCCCcEEEEEcCCc
Confidence 111 1 2234445554221 223333333332 3333211111111111 146788899999999
Q ss_pred eEEEEEccC
Q 010871 337 CIYSISMES 345 (498)
Q Consensus 337 ~i~i~d~~~ 345 (498)
+|+..|-..
T Consensus 213 tVyyvdq~g 221 (1416)
T KOG3617|consen 213 TVYYVDQNG 221 (1416)
T ss_pred eEEEEcCCC
Confidence 999887543
No 315
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.49 E-value=8.8e-07 Score=78.02 Aligned_cols=240 Identities=13% Similarity=0.185 Sum_probs=134.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-----EEEEEecC-------------CCeEEEEEEcC-CCcEEEE
Q 010871 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD-----CIRVIYGV-------------SSQLCIRFHPV-NNNFLSV 290 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~-------------~~v~~i~~~~~-~~~~l~~ 290 (498)
....|+++.|...|.||++|...|.|.++.-+... ....++.| ..+..+.|..+ +...++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34678999999999999999999999999765332 22233433 23556777654 4456666
Q ss_pred EeCCCcEEEEEcCCCcEE--EEeec--------CCCeEEEEEcCCCCEEE-EEcCCCeEEEEEccCCccccccccccccc
Q 010871 291 GNANKEITVFNFSTGRII--KKLVV--------DSEVTSMDHDHTGQLLF-CGDAQGCIYSISMESHSGALSRSHRHRTT 359 (498)
Q Consensus 291 g~~dg~i~iwd~~~~~~~--~~~~~--------~~~i~~l~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 359 (498)
.+.|.+|++|.+...... ..-.. .+++++.. .-.+- +.-.+-.|.....+ ...
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~----~l~lprls~hd~iiaa~p~r------------vya 168 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK----ELLLPRLSEHDEIIAAKPCR------------VYA 168 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHH----HhhcccccccceEEEeccce------------ecc
Confidence 779999999998654321 11111 11111110 00000 00001111111000 001
Q ss_pred CCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCce--eeeEEEEeeeeeccCCCEEE
Q 010871 360 GKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRV--HSIRASFCPLLSLEKGEYIV 437 (498)
Q Consensus 360 ~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ 437 (498)
..|...|.++.+. .+...+++ +.|-.|.+|++......+........-.... ....+.|+| .....+.
T Consensus 169 NaH~yhiNSiS~N-----sD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp----~~cn~fm 238 (460)
T COG5170 169 NAHPYHINSISFN-----SDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHP----EMCNVFM 238 (460)
T ss_pred ccceeEeeeeeec-----Cchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCH----hHcceEE
Confidence 4566667777765 55555554 5677899999875432221111110000000 011235666 3456777
Q ss_pred EEeCCCcEEEEECCCCCc----cce----------eeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 438 AGSEDSNVYFYDLAKPKH----SCV----------NKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 438 ~gs~dg~I~iwd~~~~~~----~~~----------~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
..+..|.|++-|++.... ..+ .-+.+-...|..+.|+++|+++++-+. -+|+|||+.-
T Consensus 239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm 310 (460)
T COG5170 239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM 310 (460)
T ss_pred EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc
Confidence 888899999999984211 001 111223457889999999999998765 6999999763
No 316
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.48 E-value=3e-05 Score=68.22 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=66.3
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeec-------CCCCeEEEEEccCC------CEEEEEeCCCcEEE
Q 010871 191 TILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNG-------HSKDVTDFDFSSNN------QYIASSSMDKTVRV 257 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~-------h~~~V~~l~~s~~~------~~l~s~s~dg~v~i 257 (498)
..++||| ++.+||.+...|+|+++|+.. ..+..+.. -..+|..|.|.+.. ..|+.-..+|.++-
T Consensus 47 Rkl~WSp-D~tlLa~a~S~G~i~vfdl~g--~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 47 RKLAWSP-DCTLLAYAESTGTIRVFDLMG--SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred eEEEECC-CCcEEEEEcCCCeEEEEeccc--ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 5689999 999999999999999999984 22333322 23567778776532 24666678888887
Q ss_pred EECCC-----CcEEEEEec----CCCeEEEEEEcCCCcEEEEEe
Q 010871 258 WELTK-----GDCIRVIYG----VSSQLCIRFHPVNNNFLSVGN 292 (498)
Q Consensus 258 wd~~~-----~~~~~~~~~----~~~v~~i~~~~~~~~~l~~g~ 292 (498)
+-+.. .+....+.. ..++.++.|+|.. ++|++|+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG 166 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGG 166 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEec
Confidence 77532 233344432 2478899999955 5655554
No 317
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.43 E-value=0.00033 Score=70.45 Aligned_cols=269 Identities=12% Similarity=0.151 Sum_probs=146.7
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCC------CeE--EEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSK------DVT--DFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYG 271 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~------~V~--~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 271 (498)
+..+..++.++.|.-.|..+ ++.+..+..... .+. .+... ++..++.++.+|.|..+|.++|+.+..+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~t-G~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAAT-GKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCC-ChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 34666777789999999887 555554432221 111 11111 225788888999999999999999988765
Q ss_pred CCC------eE-EEEEEcCCCcEEEEEe---------CCCcEEEEEcCCCcEEEEeecCCC-------------------
Q 010871 272 VSS------QL-CIRFHPVNNNFLSVGN---------ANKEITVFNFSTGRIIKKLVVDSE------------------- 316 (498)
Q Consensus 272 ~~~------v~-~i~~~~~~~~~l~~g~---------~dg~i~iwd~~~~~~~~~~~~~~~------------------- 316 (498)
... +. ...+. + .++++++ .+|.+..+|..+|+.+..+.....
T Consensus 139 ~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 543 11 12222 2 3444443 367899999999999888753210
Q ss_pred --e-EEEEEcCCCCEEEEEcCCC------------------eEEEEEccCCccccccccccccc---CCCccceeeEEEe
Q 010871 317 --V-TSMDHDHTGQLLFCGDAQG------------------CIYSISMESHSGALSRSHRHRTT---GKRKCPVTTVQYR 372 (498)
Q Consensus 317 --i-~~l~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~ 372 (498)
+ ...++++.+..+++++.++ .|.-+|..+.+............ .....++ +.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~----~~ 291 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS----LA 291 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe----EE
Confidence 1 1234555667788887665 56666665444333221110000 0001111 10
Q ss_pred EeeEcCCCc---EEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEE----------
Q 010871 373 SFSLLAGGP---VLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAG---------- 439 (498)
Q Consensus 373 ~~~~s~~~~---~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---------- 439 (498)
.+. .-++. .+++++.+|.+..+|..++.. ....... ..++.. +...++.+
T Consensus 292 ~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~---~W~~~~~-----------~~~~~~--~~~~vyv~~~~~~~~~~~ 354 (488)
T cd00216 292 DIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKL---ISARPEV-----------EQPMAY--DPGLVYLGAFHIPLGLPP 354 (488)
T ss_pred ecc-ccCCCeeEEEEEECCCceEEEEECCCCcE---eeEeEee-----------cccccc--CCceEEEccccccccCcc
Confidence 000 01232 678888899999999987633 1111110 000111 11222221
Q ss_pred --------eCCCcEEEEECCCCCccceeeecCC--C------CCe--EEEEEcCCCCEEEEEeCCCeEEEeecCCCC
Q 010871 440 --------SEDSNVYFYDLAKPKHSCVNKLQGH--R------FPV--VAVAWNHGENLLASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 440 --------s~dg~I~iwd~~~~~~~~~~~~~~h--~------~~V--~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~s 498 (498)
..+|.|.-.|+.+++. +.+.... . .+. ..+.. .+..|+.++.||.|+.+|.+++.
T Consensus 355 ~~~~~~~~~~~G~l~AlD~~tG~~--~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 355 QKKKRCKKPGKGGLAALDPKTGKV--VWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred cccCCCCCCCceEEEEEeCCCCcE--eeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCc
Confidence 2356777778877652 3222211 0 111 11222 45688888999999999987763
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.38 E-value=9.9e-06 Score=81.51 Aligned_cols=184 Identities=13% Similarity=0.156 Sum_probs=132.6
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeE-E
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-C 277 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~-~ 277 (498)
++..++-|+....+..+|+.+ .+..+...-....|+-|+. ++++|++|...|+|.+-|..+.+.++++..|+... .
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNT-EKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeeccc-ceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 556788888888899999987 5555555544445776665 57899999999999999999999999999997544 3
Q ss_pred EEEEcCCCcEEEEEeC---------CCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCC-CEEEEEcCCCeEEEEEccCCc
Q 010871 278 IRFHPVNNNFLSVGNA---------NKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTG-QLLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 278 i~~~~~~~~~l~~g~~---------dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~ 347 (498)
+.. .+++|++++. |..|+|||++..+.+.-++......-+.|+|.- ..+++++..|...+.|.....
T Consensus 223 fDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 333 3466776654 456899999999888877766666777888864 478888999999998843222
Q ss_pred ccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEE
Q 010871 348 GALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFS 396 (498)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd 396 (498)
........ .......+ ..+.++++++.++.|..+|.|.+|.
T Consensus 300 NP~~~~~~---v~p~~s~i-----~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKM---VNPNGSGI-----SAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCccceeE---EccCCCcc-----eeEEecCCCceEEEecccCcEeeec
Confidence 21111000 01111223 3455559999999999999999997
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00014 Score=73.15 Aligned_cols=193 Identities=13% Similarity=0.225 Sum_probs=124.8
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCC-eEEEEEccCCCEEEEEeCCCc-----EEEEECCC
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKD-VTDFDFSSNNQYIASSSMDKT-----VRVWELTK 262 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~-V~~l~~s~~~~~l~s~s~dg~-----v~iwd~~~ 262 (498)
.|+|+ ++ ++..+|.|+.+|.|.+.+-. ....+.++.+... |..+....+..+|++.+.|+. |+||+++.
T Consensus 27 ~isc~--~s-~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISCC--SS-STGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeEE--cC-CCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 45554 55 78899999999988777653 4566788888877 555544444468888888765 89999873
Q ss_pred C------cEE---EEEe--c---CCCeEEEEEEcCCCcEEEEEeCCCcEEEEE--cCCC---cEEEEeecCCCeEEEEEc
Q 010871 263 G------DCI---RVIY--G---VSSQLCIRFHPVNNNFLSVGNANKEITVFN--FSTG---RIIKKLVVDSEVTSMDHD 323 (498)
Q Consensus 263 ~------~~~---~~~~--~---~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd--~~~~---~~~~~~~~~~~i~~l~~~ 323 (498)
- +++ +.+. . ..++.+++.+. +-..+++|-.+|.|..+. +... +.........+|+.+++.
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 3 344 2222 1 23455777776 468999999999999884 2211 122222466899999999
Q ss_pred CCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 324 HTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 324 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
.++..++.+.....|.+|.+...+ ... .....+...+.|..+. +....+++++ +..+.+|+...
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~-p~~-----~~ld~~G~~lnCss~~-----~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRT-PSL-----KVLDNNGISLNCSSFS-----DGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCC-cce-----eeeccCCccceeeecC-----CCCccEEEec-CceEEEEcCCC
Confidence 988864444445678888887443 111 1125566677777664 3333355544 34789998763
No 320
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.34 E-value=0.0018 Score=60.96 Aligned_cols=276 Identities=13% Similarity=0.100 Sum_probs=127.0
Q ss_pred EEecCCCCE-EEEEeCCCc--EEEEEcCCCCceeEEeecCC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 010871 194 KFGHMSSDL-LAYGASDGT--LTVCTVSDPPKVIKLLNGHS-KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVI 269 (498)
Q Consensus 194 ~~sp~~~~~-lasg~~dg~--i~iwd~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 269 (498)
+|.+ +|+. |.++..||. +.+.|+.+ ..+.+|..+. .......++++++.|+-......|+--|+.+.+....+
T Consensus 42 ~ft~-dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTD-DGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-T-TS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CcCC-CCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 4566 6654 444555655 55556655 4445554433 33345677788888876666678999999998766555
Q ss_pred ecCCCeE-EEEEEcC-CCcEEEEEe----------------------CCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCC
Q 010871 270 YGVSSQL-CIRFHPV-NNNFLSVGN----------------------ANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHT 325 (498)
Q Consensus 270 ~~~~~v~-~i~~~~~-~~~~l~~g~----------------------~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~ 325 (498)
.....-. ...|..+ +...++..- -...|.-.|+.+|+....+.....+..+.|+|.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 5554433 3555422 333332211 123567778899988777788888999999998
Q ss_pred CCEEEEEcCCC-----eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-----CCcEEEE
Q 010871 326 GQLLFCGDAQG-----CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-----DGNLSFF 395 (498)
Q Consensus 326 ~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-----dg~i~iw 395 (498)
...+++=+..| .-++|-++..........+. ....+..-.| |.++|..|.--+. +..|.-+
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-----~~~e~~gHEf----w~~DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-----MEGESVGHEF----WVPDGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEE----E-TTSS-EEEEEEETTT--EEEEEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-----CCCccccccc----ccCCCCEEEEEeecCCCCceEEEee
Confidence 76555544333 13566655443333222111 1112222111 2277776554322 2345555
Q ss_pred EccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC----------------cEEEEECCCCCcccee
Q 010871 396 SVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS----------------NVYFYDLAKPKHSCVN 459 (498)
Q Consensus 396 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg----------------~I~iwd~~~~~~~~~~ 459 (498)
|..+..... ...... .+-...++||++++.=+.|. .|+++++..+....+.
T Consensus 270 d~~t~~~~~-----~~~~p~--------~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~ 336 (386)
T PF14583_consen 270 DPDTGERRR-----LMEMPW--------CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA 336 (386)
T ss_dssp -TTT--EEE-----EEEE-S--------EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred CCCCCCceE-----EEeCCc--------eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence 555432110 011111 11122335888887655542 5677888775432222
Q ss_pred e-------ecCCCC-CeEEEEEcCCCCEEE-EEeCCCeEEEeec
Q 010871 460 K-------LQGHRF-PVVAVAWNHGENLLA-SSDLYGIVIVWKR 494 (498)
Q Consensus 460 ~-------~~~h~~-~V~~l~~sp~~~~l~-s~~~Dg~i~iW~~ 494 (498)
. +.+|.. .=-...|+||+++++ ++...|...||-+
T Consensus 337 ~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 337 RHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp E-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 2 122211 124578999999655 5556787777644
No 321
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.34 E-value=0.0009 Score=61.67 Aligned_cols=273 Identities=12% Similarity=0.136 Sum_probs=152.5
Q ss_pred CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC----------CCcEEEEECCCCcEEEEEecCCC--e--
Q 010871 210 GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM----------DKTVRVWELTKGDCIRVIYGVSS--Q-- 275 (498)
Q Consensus 210 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~~--v-- 275 (498)
+.+.|+|.++ ++.+..+.. +-.-.+..+|+++.+++++. .-.|.+||..+-.....+.-... .
T Consensus 17 ~rv~viD~d~-~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADS-GKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTT-TEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCC-CcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 4689999887 666666553 22234667899998887532 33699999999988876654432 1
Q ss_pred ----EEEEEEcCCCcEEEEE--eCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccc
Q 010871 276 ----LCIRFHPVNNNFLSVG--NANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGA 349 (498)
Q Consensus 276 ----~~i~~~~~~~~~l~~g--~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 349 (498)
....++.++ +++++. +-...|.|.|+..++.+..+...+...-.-.. .+-|.+-+.||.+..+.++.....
T Consensus 94 ~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 94 VPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp S--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSE
T ss_pred cccccceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecC--CCceEEEecCCceEEEEECCCCCE
Confidence 134566644 444433 23356888888888888887765543332222 245788888999999888754433
Q ss_pred ccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeecc--CCceeeeEEEEeee
Q 010871 350 LSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKL--APRVHSIRASFCPL 427 (498)
Q Consensus 350 ~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 427 (498)
. .... ..+.....++..-. .+...+..++-.+.+|.|+-.|+........ ....... .......-..|..+
T Consensus 171 ~-~~~t-~~F~~~~dp~f~~~----~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~-~~~~~~t~~e~~~~WrPGG~Q~~ 243 (342)
T PF06433_consen 171 A-QKST-KVFDPDDDPLFEHP----AYSRDGGRLYFVSYEGNVYSADLSGDSAKFG-KPWSLLTDAEKADGWRPGGWQLI 243 (342)
T ss_dssp E-EEEE-EESSTTTS-B-S------EEETTTTEEEEEBTTSEEEEEEETTSSEEEE-EEEESS-HHHHHTTEEE-SSS-E
T ss_pred e-Eeec-cccCCCCccccccc----ceECCCCeEEEEecCCEEEEEeccCCccccc-CcccccCccccccCcCCcceeee
Confidence 3 2111 12333333332211 1114555666688899999888875532111 1111100 00011111123333
Q ss_pred eeccCCCEEEEEe---CCC-------cEEEEECCCCCccceeeecCCCCCeEEEEEcCCCC-EEEEE-eCCCeEEEeecC
Q 010871 428 LSLEKGEYIVAGS---EDS-------NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGEN-LLASS-DLYGIVIVWKRA 495 (498)
Q Consensus 428 ~~~~~~~~l~~gs---~dg-------~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~-~~Dg~i~iW~~~ 495 (498)
++.+..+.|++-- .+| .|.+||+.+.+ .+..+.. ..++.+|..+.+.+ +|++. ..++.|.+||..
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k--rv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK--RVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE--EEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe--EEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 3333333333321 112 47788888854 5666653 23577999997765 66554 458999999998
Q ss_pred CCC
Q 010871 496 KTS 498 (498)
Q Consensus 496 ~~s 498 (498)
+++
T Consensus 321 tGk 323 (342)
T PF06433_consen 321 TGK 323 (342)
T ss_dssp T--
T ss_pred CCc
Confidence 763
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.33 E-value=0.00023 Score=74.33 Aligned_cols=205 Identities=16% Similarity=0.203 Sum_probs=126.6
Q ss_pred CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC--Ccc-c
Q 010871 273 SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES--HSG-A 349 (498)
Q Consensus 273 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~--~~~-~ 349 (498)
..+.++.|..+. +-++.+...|.|.+.|..+......-.....|.+++|+|+++.++..+..+++.+-.-.- ... .
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 478889998855 556667788999999988877665556788999999999999999999888877644210 000 0
Q ss_pred c----------cc---cccccccC------------C---------CccceeeEEEeEeeEcCCCcEEEEEE-----cCC
Q 010871 350 L----------SR---SHRHRTTG------------K---------RKCPVTTVQYRSFSLLAGGPVLLTCT-----QDG 390 (498)
Q Consensus 350 ~----------~~---~~~~~~~~------------~---------~~~~i~~~~~~~~~~s~~~~~l~t~s-----~dg 390 (498)
+ .. ......+. . ..+.-+++.|. -||.++++.. ...
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-----gDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-----GDGEYFAVSFVESETGTR 222 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-----cCCcEEEEEEEeccCCce
Confidence 0 00 00000000 0 01111234444 8999998843 237
Q ss_pred cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEe---CCCcEEEEECCCCCc-cceeeecCCCC
Q 010871 391 NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGS---EDSNVYFYDLAKPKH-SCVNKLQGHRF 466 (498)
Q Consensus 391 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs---~dg~I~iwd~~~~~~-~~~~~~~~h~~ 466 (498)
.|++||.....+ ....+........+|-| .|..+++-. .|+.|.+|.-+.-.. .....+.....
T Consensus 223 kirV~drEg~Ln-------s~se~~~~l~~~LsWkP-----sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~ 290 (1265)
T KOG1920|consen 223 KIRVYDREGALN-------STSEPVEGLQHSLSWKP-----SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEK 290 (1265)
T ss_pred eEEEecccchhh-------cccCcccccccceeecC-----CCCeEeeeeecCCCCcEEEEecCCccccccccCCccccc
Confidence 899999872111 00011111222336666 888888754 356799998764321 11222333444
Q ss_pred CeEEEEEcCCCCEEEE---EeCCCeEEEeecC
Q 010871 467 PVVAVAWNHGENLLAS---SDLYGIVIVWKRA 495 (498)
Q Consensus 467 ~V~~l~~sp~~~~l~s---~~~Dg~i~iW~~~ 495 (498)
.|..++|+.++..||+ ......|++|-+.
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEec
Confidence 5999999999999987 5555569999764
No 323
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=9.7e-06 Score=75.18 Aligned_cols=250 Identities=14% Similarity=0.182 Sum_probs=154.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC---cEEEEEecCC-CeEEEEEEcCCCcEEEEEeC-CCcEEEEEcCC
Q 010871 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG---DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNA-NKEITVFNFST 304 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~-dg~i~iwd~~~ 304 (498)
|.+.|+.+.-+ ..+++.+++.||.++.|--..- +.+..+..|- .+.+++.+- ++.++.+.+. |..++++|+++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 77778777655 3469999999999999985531 2222333343 334555554 5567777666 99999999987
Q ss_pred CcEEEEeecCCCeEEEEEc-CCCC---EEEE-EcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCC
Q 010871 305 GRIIKKLVVDSEVTSMDHD-HTGQ---LLFC-GDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG 379 (498)
Q Consensus 305 ~~~~~~~~~~~~i~~l~~~-~~~~---~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~ 379 (498)
-..+..+........+.|. ..|. .+++ .-.+|.|.++|-....+..... ...|..+|..+.+. +.
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f-----kklH~sPV~~i~y~-----qa 155 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF-----KKLHFSPVKKIRYN-----QA 155 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee-----cccccCceEEEEee-----cc
Confidence 7665544433222223332 2231 3433 3467889999876544333222 26788899999887 88
Q ss_pred CcEEEEEEcCCcEEEEEcccccc-ceeeEeEeecc--------CCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEEC
Q 010871 380 GPVLLTCTQDGNLSFFSVALEIQ-GYLTFRCSLKL--------APRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDL 450 (498)
Q Consensus 380 ~~~l~t~s~dg~i~iwd~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~ 450 (498)
+..+++....|.|..|......+ .........++ ........+.|+| +|..+.+-+.|..|+++++
T Consensus 156 ~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-----~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 156 GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-----DGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-----ccCcccccCcccEEEEEEe
Confidence 89999999999999998873100 00001111111 1111222335555 9999999999999999999
Q ss_pred CCCCccce------------------------------eeecCCCC-CeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 451 AKPKHSCV------------------------------NKLQGHRF-PVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 451 ~~~~~~~~------------------------------~~~~~h~~-~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
.+++.... ..+..|.. .-+.+.|...+++|+-|+.=| |+|.++.++
T Consensus 231 KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 231 KTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred ccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence 88642100 01112222 235677888899998887643 677776653
No 324
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.28 E-value=0.0017 Score=60.29 Aligned_cols=233 Identities=18% Similarity=0.271 Sum_probs=130.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEE-----------
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIR----------- 267 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~----------- 267 (498)
.++.|+.|..+| |.+++............ ...|..|...++-+.|++-+ |+.+.++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 678999999999 89999944233333333 23399999999877777765 5999999987554333
Q ss_pred ----EEecCCCeEEEE--EEcCCCcEEEEEeCCCcEEEEEcCCC-----cEEEEeecCCCeEEEEEcCCCCEEEEEcCCC
Q 010871 268 ----VIYGVSSQLCIR--FHPVNNNFLSVGNANKEITVFNFSTG-----RIIKKLVVDSEVTSMDHDHTGQLLFCGDAQG 336 (498)
Q Consensus 268 ----~~~~~~~v~~i~--~~~~~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg 336 (498)
.+.....+...+ -...+...|+++ ....|.+|..... +..+.+.....+.+++|. ++.+++|..++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc
Confidence 111222333333 112233444444 5558888887653 566777788999999998 56777777555
Q ss_pred eEEEEEccCCccccccccccc-----ccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEee
Q 010871 337 CIYSISMESHSGALSRSHRHR-----TTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSL 411 (498)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~ 411 (498)
..+.|+.............. .......++..+.. +++.+|++. |..-.+.|....... ....
T Consensus 159 -f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~e~Ll~~--~~~g~fv~~~G~~~r----~~~i 225 (275)
T PF00780_consen 159 -FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL------SDNEFLLCY--DNIGVFVNKNGEPSR----KSTI 225 (275)
T ss_pred -eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe------CCceEEEEe--cceEEEEcCCCCcCc----ccEE
Confidence 66777774333222111100 00111223333332 445555542 333334444322111 1112
Q ss_pred ccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC
Q 010871 412 KLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG 463 (498)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~ 463 (498)
........+ .+ ...||++-+.+ .|.||++.+++ +++.+..
T Consensus 226 ~W~~~p~~~--~~-------~~pyli~~~~~-~iEV~~~~~~~--lvQ~i~~ 265 (275)
T PF00780_consen 226 QWSSAPQSV--AY-------SSPYLIAFSSN-SIEVRSLETGE--LVQTIPL 265 (275)
T ss_pred EcCCchhEE--EE-------ECCEEEEECCC-EEEEEECcCCc--EEEEEEC
Confidence 222222222 22 35577776664 59999999964 5666654
No 325
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=9.8e-07 Score=88.08 Aligned_cols=224 Identities=11% Similarity=0.143 Sum_probs=139.6
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCC-cEE
Q 010871 221 PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANK-EIT 298 (498)
Q Consensus 221 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg-~i~ 298 (498)
.+..+.|..|....+|++|+.+.++|+.|+..|.|+++++.+|.......+|. .++-+.-+.++...|.+++... ...
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 34566788899999999999999999999999999999999999998888886 5566666666655565555554 567
Q ss_pred EEEcCC-CcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEc
Q 010871 299 VFNFST-GRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLL 377 (498)
Q Consensus 299 iwd~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s 377 (498)
+|++.. +...+.+. .-.++.|+...+.-+.|+......+||+.+........... .+....-++.. |+
T Consensus 1171 LW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~---~~~~y~~n~a~-----Fs 1239 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT---VTSSYSNNLAH-----FS 1239 (1516)
T ss_pred HhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc---hhhhhhccccc-----cC
Confidence 899754 33333332 34567787766666677777788999987654332211100 00000112233 33
Q ss_pred CCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccc
Q 010871 378 AGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSC 457 (498)
Q Consensus 378 ~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~ 457 (498)
|...+++ .|| .+||++.... ...+..-...+...|+| .|.-++.-+ .|||+++ ...
T Consensus 1240 P~D~LIl---ndG--vLWDvR~~~a-------Ih~FD~ft~~~~G~FHP-----~g~eVIINS-----EIwD~RT--F~l 1295 (1516)
T KOG1832|consen 1240 PCDTLIL---NDG--VLWDVRIPEA-------IHRFDQFTDYGGGGFHP-----SGNEVIINS-----EIWDMRT--FKL 1295 (1516)
T ss_pred CCcceEe---eCc--eeeeeccHHH-------HhhhhhheecccccccC-----CCceEEeec-----hhhhhHH--HHH
Confidence 7777665 344 4799874311 11111111223346776 888888765 4899988 434
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEE
Q 010871 458 VNKLQGHRFPVVAVAWNHGENLLA 481 (498)
Q Consensus 458 ~~~~~~h~~~V~~l~~sp~~~~l~ 481 (498)
++....- .-..|.|+..|..++
T Consensus 1296 Lh~VP~L--dqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1296 LHSVPSL--DQCAVTFNSTGDVMY 1317 (1516)
T ss_pred HhcCccc--cceEEEeccCccchh
Confidence 4433321 124556666665443
No 326
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.21 E-value=0.00054 Score=66.14 Aligned_cols=243 Identities=13% Similarity=0.183 Sum_probs=128.9
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE-------------------------------------------EEE
Q 010871 233 DVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI-------------------------------------------RVI 269 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-------------------------------------------~~~ 269 (498)
.|+.+.|.++..-|+.|...|.|.||.+...+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5888999998889999999999999865432111 011
Q ss_pred e-cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee---------cCCCeEEEEEc-----CCC---CEEEE
Q 010871 270 Y-GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV---------VDSEVTSMDHD-----HTG---QLLFC 331 (498)
Q Consensus 270 ~-~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---------~~~~i~~l~~~-----~~~---~~l~~ 331 (498)
. ..+.+.+++.+. -.++++|..+|.+.|.|++....+..-. ....++++.|. .|+ -.+++
T Consensus 83 ~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 1 124566777764 3499999999999999999888887643 22357788775 222 37899
Q ss_pred EcCCCeEEEEEccC-CcccccccccccccCCCccceeeEEEeE-------eeE-------cC--CCcEEEEEEcCCcEEE
Q 010871 332 GDAQGCIYSISMES-HSGALSRSHRHRTTGKRKCPVTTVQYRS-------FSL-------LA--GGPVLLTCTQDGNLSF 394 (498)
Q Consensus 332 ~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~-------s~--~~~~l~t~s~dg~i~i 394 (498)
|+..|.+.+|.+.. ..+......... ...+.++|..+..-. .+. .. .-+-+++...+..+++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~-~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGA-TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEE-E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeec-cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999998853 222222111111 124445555443210 000 00 1123445555778999
Q ss_pred EEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCC----CCeEE
Q 010871 395 FSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHR----FPVVA 470 (498)
Q Consensus 395 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~----~~V~~ 470 (498)
+.......... ..........+.+.+......+..|++-..+|.|++|.+.. .+.+..++-.. ..+..
T Consensus 240 ~~~~~~k~~~K------~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~--Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 240 FKPPKSKGAHK------SFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS--LKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp E-TT---EEEE------E-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT----EEEEEE-SS---HHHHTT
T ss_pred EeCCCCcccce------eeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC--chHhhcccCCCccccccccc
Confidence 98875422111 11222222222332211112577888999999999999988 44455444321 23455
Q ss_pred EEEcCCCCEEEEEeCC
Q 010871 471 VAWNHGENLLASSDLY 486 (498)
Q Consensus 471 l~~sp~~~~l~s~~~D 486 (498)
..++++|..++-.+..
T Consensus 312 ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPS 327 (395)
T ss_dssp -EE-TTS-EEEE-SSS
T ss_pred cEECCCCCEEEEeCcc
Confidence 6778888877766543
No 327
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.00017 Score=66.26 Aligned_cols=148 Identities=11% Similarity=0.110 Sum_probs=98.8
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEEC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWEL 260 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~ 260 (498)
.+.+|...|..++|||....++..++.+..|+|.|+.+ ...+..+..| ..+++++|.-|. .+|..|-..|.|.|+|+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 67788899999999996656899999999999999998 7777788877 789999998866 57788889999999999
Q ss_pred CCCcE-EEEEec---CCCeEEEEEEcCC-----CcEEEEEeCCCcEEEEEcC----CCcEEEEeecCCCeEEEEEcCCCC
Q 010871 261 TKGDC-IRVIYG---VSSQLCIRFHPVN-----NNFLSVGNANKEITVFNFS----TGRIIKKLVVDSEVTSMDHDHTGQ 327 (498)
Q Consensus 261 ~~~~~-~~~~~~---~~~v~~i~~~~~~-----~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~~~~i~~l~~~~~~~ 327 (498)
+..+- +..+.. -.++..++..+.+ +.+++....+ +..|++. ..-++..+...+...+++.++..+
T Consensus 266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN 343 (463)
T ss_pred cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccc
Confidence 85432 222222 1244444443321 2233333222 3445442 223334444566677777777666
Q ss_pred EEEEEc
Q 010871 328 LLFCGD 333 (498)
Q Consensus 328 ~l~~~~ 333 (498)
.++...
T Consensus 344 h~l~ty 349 (463)
T KOG1645|consen 344 HLLLTY 349 (463)
T ss_pred eEEEEe
Confidence 555543
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=0.00016 Score=70.19 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=82.1
Q ss_pred CCeEEEEEcc-CCCEEEEE----eCCCc----EEEEECCCCcE----EEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEE
Q 010871 232 KDVTDFDFSS-NNQYIASS----SMDKT----VRVWELTKGDC----IRVIYGVSSQLCIRFHPVNNNFLSVGNANKEIT 298 (498)
Q Consensus 232 ~~V~~l~~s~-~~~~l~s~----s~dg~----v~iwd~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~ 298 (498)
....++.|+. +...+.+. +.+|. -++|++...+. +..+...+.+.+++++|+ ...++.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~-E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPS-EDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcc-cceEEEEecCCeEE
Confidence 3346777776 33444443 34444 34566665432 334456678999999995 57788899999999
Q ss_pred EEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCc
Q 010871 299 VFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 299 iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~ 347 (498)
+||...+.... .+..-.++.++|+|+|.++++|+..|.+.+||+....
T Consensus 285 LyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 285 LYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcCCCeeee-eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99987764332 2566778999999999999999999999999986543
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.13 E-value=0.0014 Score=57.04 Aligned_cols=74 Identities=14% Similarity=0.035 Sum_probs=56.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS 273 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 273 (498)
-|++++.|+..|.+++.+..+ +.....+..-..-=......+++..+..++.|++....|..+..++...+..+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred ECCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence 367899999999999999998 65555555322211223446688899999999999999999988888766544
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.12 E-value=0.00073 Score=65.74 Aligned_cols=121 Identities=17% Similarity=0.254 Sum_probs=85.0
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEE----eCCCc----EEEEEcCCCcEE----EEeecCCCeEEEEEcCCCCEEEEEc
Q 010871 266 IRVIYGVSSQLCIRFHPVNNNFLSVG----NANKE----ITVFNFSTGRII----KKLVVDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 266 ~~~~~~~~~v~~i~~~~~~~~~l~~g----~~dg~----i~iwd~~~~~~~----~~~~~~~~i~~l~~~~~~~~l~~~~ 333 (498)
+..+.....+.++.|+-..++.+.+. +.+|. -.+|++..++.. ..+..+..+.+++++|+...++.|+
T Consensus 199 L~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC 278 (545)
T PF11768_consen 199 LSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC 278 (545)
T ss_pred EEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe
Confidence 34445555677888887666666554 23443 346776555422 2335788999999999999999999
Q ss_pred CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 334 AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
.||.|.+||......... ...-..+.+.|+ |+|..+++|+..|.+.+||+...
T Consensus 279 ~DgSiiLyD~~~~~t~~~---------ka~~~P~~iaWH-----p~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 279 EDGSIILYDTTRGVTLLA---------KAEFIPTLIAWH-----PDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCeEEEEEcCCCeeeee---------eecccceEEEEc-----CCCcEEEEEcCCceEEEEEeecC
Confidence 999999999865432221 112224445555 99999999999999999998754
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.11 E-value=0.0037 Score=57.73 Aligned_cols=154 Identities=12% Similarity=0.157 Sum_probs=96.1
Q ss_pred EEEEecCCCCEEEEEe----------CCCcEEEEEcCCCCceeEEee--c-CCC----CeEEEEEccCCCEEEEE--eCC
Q 010871 192 ILKFGHMSSDLLAYGA----------SDGTLTVCTVSDPPKVIKLLN--G-HSK----DVTDFDFSSNNQYIASS--SMD 252 (498)
Q Consensus 192 ~v~~sp~~~~~lasg~----------~dg~i~iwd~~~~~~~~~~~~--~-h~~----~V~~l~~s~~~~~l~s~--s~d 252 (498)
.+..+| +++.+++++ ..-.|.+||..+ ......+. . |.. ....+.++.|+++++.. +--
T Consensus 40 ~~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-L~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 40 NVALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQT-LSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp EEEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTT-TEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred ceeECC-CCCEEEEEEEEEeccccccceeEEEEEecCc-CcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 366788 888777653 345699999988 55444322 1 121 22346788899887765 345
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC-CCcEEEEee-----cCCC-eEEEEEcCC
Q 010871 253 KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS-TGRIIKKLV-----VDSE-VTSMDHDHT 325 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~-----~~~~-i~~l~~~~~ 325 (498)
-.|.|-|+..++.+..+...+... ..|.++.-+.+-+.||.+.-..+. .|+...+.. ...+ +..-++...
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PGC~~---iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPGCWL---IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTSEEE---EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred CeEEEEECCCCceeeeecCCCEEE---EEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 579999999999988887665333 334444557777899999999987 566553321 1122 223344455
Q ss_pred CCEEEEEcCCCeEEEEEccCCcccc
Q 010871 326 GQLLFCGDAQGCIYSISMESHSGAL 350 (498)
Q Consensus 326 ~~~l~~~~~dg~i~i~d~~~~~~~~ 350 (498)
+..++--+.+|.|+-.|+.......
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~ 219 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKF 219 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccc
Confidence 5566667889999998887655433
No 332
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.10 E-value=0.0019 Score=62.18 Aligned_cols=254 Identities=12% Similarity=0.131 Sum_probs=125.3
Q ss_pred CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC----------------
Q 010871 209 DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV---------------- 272 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---------------- 272 (498)
.+.+.|||+.+ ++. ..+......+....|+|+|+.|+... ++.|.+++..++...+.-...
T Consensus 22 ~~~y~i~d~~~-~~~-~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDIET-GEI-TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEETTT-TEE-EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEecCC-Cce-EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 46789999987 333 33333367889999999999998876 578999998877544322211
Q ss_pred --CCeEEEEEEcCCCcEEEEEeCCCcE-----------------------------------EEEEcCCCcEEEE-e---
Q 010871 273 --SSQLCIRFHPVNNNFLSVGNANKEI-----------------------------------TVFNFSTGRIIKK-L--- 311 (498)
Q Consensus 273 --~~v~~i~~~~~~~~~l~~g~~dg~i-----------------------------------~iwd~~~~~~~~~-~--- 311 (498)
..-..+-|+|++..++..-..+..| .|+|+.+++.... .
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~ 178 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNS 178 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HH
T ss_pred ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccc
Confidence 1224678999776655554444333 3344444433211 0
Q ss_pred --ecCCCeEEEEEcCCCCEEEEE--cCCC---eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEE
Q 010871 312 --VVDSEVTSMDHDHTGQLLFCG--DAQG---CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLL 384 (498)
Q Consensus 312 --~~~~~i~~l~~~~~~~~l~~~--~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~ 384 (498)
.....+..+.|.+++..|++. ..+. .+.++|.............. .+.-.......+. ...++.+|.
T Consensus 179 ~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~---~~Wv~~~~~~~~~---~~~~~~~l~ 252 (353)
T PF00930_consen 179 LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS---DGWVDVYDPPHFL---GPDGNEFLW 252 (353)
T ss_dssp HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES---SSSSSSSSEEEE----TTTSSEEEE
T ss_pred cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC---Ccceeeecccccc---cCCCCEEEE
Confidence 123447788888888733332 2222 34555554433222221110 1111111111110 013445566
Q ss_pred EEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCE-EEEEeCCC----cEEEEECC-CCCccce
Q 010871 385 TCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEY-IVAGSEDS----NVYFYDLA-KPKHSCV 458 (498)
Q Consensus 385 t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~gs~dg----~I~iwd~~-~~~~~~~ 458 (498)
....+|.-.||-+...... .+......-.+.. ...+.+ +++. ++++..++ .|+..++. .+. +
T Consensus 253 ~s~~~G~~hly~~~~~~~~---~~~lT~G~~~V~~-i~~~d~-----~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---~ 320 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDGGK---PRQLTSGDWEVTS-ILGWDE-----DNNRIYFTANGDNPGERHLYRVSLDSGGE---P 320 (353)
T ss_dssp EEETTSSEEEEEEETTSSE---EEESS-SSS-EEE-EEEEEC-----TSSEEEEEESSGGTTSBEEEEEETTETTE---E
T ss_pred EEEcCCCcEEEEEcccccc---eeccccCceeecc-cceEcC-----CCCEEEEEecCCCCCceEEEEEEeCCCCC---e
Confidence 6667887666655533221 1111111111211 123443 5444 44555432 46666666 433 3
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEE
Q 010871 459 NKLQGHRFPVVAVAWNHGENLLASS 483 (498)
Q Consensus 459 ~~~~~h~~~V~~l~~sp~~~~l~s~ 483 (498)
..+....+.-..+.|+|++++++-.
T Consensus 321 ~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 321 KCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred EeccCCCCCceEEEECCCCCEEEEE
Confidence 4444333333689999999987644
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.08 E-value=0.00097 Score=66.50 Aligned_cols=246 Identities=12% Similarity=0.141 Sum_probs=139.9
Q ss_pred CCCEEEEEeC-CCcEEEEEcCCCCceeEEee-cCCCCeEEEEEc--cCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Q 010871 199 SSDLLAYGAS-DGTLTVCTVSDPPKVIKLLN-GHSKDVTDFDFS--SNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSS 274 (498)
Q Consensus 199 ~~~~lasg~~-dg~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~s--~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 274 (498)
+|++|..-.. +..|-.-+++. .+.-+.+. .....+..++|- |+..|++.++...
T Consensus 140 dGr~~findk~n~Rvari~l~~-~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~--------------------- 197 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDV-MKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFR--------------------- 197 (635)
T ss_pred ceeEEEEecCCCcceEEEECcc-EeeceeEeCCCccCccccCccccCCccEEEeCcccc---------------------
Confidence 5566666553 55566666654 33333332 344556666664 6666777665421
Q ss_pred eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC---CC-eEEEEEccCCcccc
Q 010871 275 QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA---QG-CIYSISMESHSGAL 350 (498)
Q Consensus 275 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---dg-~i~i~d~~~~~~~~ 350 (498)
+-+.|++..+....-..+.+.+.|..+.+....+........++++++|.++++.+. .| .+...+...
T Consensus 198 ---~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e----- 269 (635)
T PRK02888 198 ---IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE----- 269 (635)
T ss_pred ---cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc-----
Confidence 112222222222233456677888888888888877777788899999999888763 22 222222111
Q ss_pred cccccccccCCCccceeeEEEeE-eeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeee
Q 010871 351 SRSHRHRTTGKRKCPVTTVQYRS-FSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLS 429 (498)
Q Consensus 351 ~~~~~~~~~~~~~~~i~~~~~~~-~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (498)
...+..+.+.. -.+.++|++... .++.|.++|..+..+...............+ .+.++|
T Consensus 270 ------------~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPH--GV~vSP--- 330 (635)
T PRK02888 270 ------------RDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPH--GVNTSP--- 330 (635)
T ss_pred ------------CceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCcc--ceEECC---
Confidence 01111111100 022267777666 3678999998751111111222222233223 235555
Q ss_pred ccCCCEEEEEeC-CCcEEEEECCCCCc----------cceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 430 LEKGEYIVAGSE-DSNVYFYDLAKPKH----------SCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 430 ~~~~~~l~~gs~-dg~I~iwd~~~~~~----------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
||+++++++. +.+|.|+|+.+.+. ..+.+..- .......+|.++|....|--.|..|..|++++
T Consensus 331 --DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 331 --DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 9998877665 78999999987431 11223222 23345678999999888888999999999875
No 334
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.06 E-value=1.8e-06 Score=83.43 Aligned_cols=204 Identities=13% Similarity=0.224 Sum_probs=128.7
Q ss_pred ccEEEEEEecCCC-CEEEEEeCCCcEEEEEcCCCCce-eEEeecCCCCeEEEEEccC-CCEEEEEe----CCCcEEEEEC
Q 010871 188 AAVTILKFGHMSS-DLLAYGASDGTLTVCTVSDPPKV-IKLLNGHSKDVTDFDFSSN-NQYIASSS----MDKTVRVWEL 260 (498)
Q Consensus 188 ~~V~~v~~sp~~~-~~lasg~~dg~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~s~~-~~~l~s~s----~dg~v~iwd~ 260 (498)
..+.|++++.... .+++.|..+|.|.+-.+..+... .....+|....++++|++- ...||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4577888766333 58999999999999988764333 3445678889999999984 45666652 3567999999
Q ss_pred CCC--cEE--EEEec--CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcC-CCCEEEEEc
Q 010871 261 TKG--DCI--RVIYG--VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDH-TGQLLFCGD 333 (498)
Q Consensus 261 ~~~--~~~--~~~~~--~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~ 333 (498)
.++ .+. ..+.. ..++.+++|.. +..++++|.....+.++|++........-....+..+.++| .+++++. .
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs-~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS-N 214 (783)
T ss_pred ccccCCCccccccccccccCcccccccc-CcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec-c
Confidence 876 211 12222 23455788884 66889999888999999997432222222334567788888 5566555 4
Q ss_pred CCCeEEEEEc-cCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccc
Q 010871 334 AQGCIYSISM-ESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVAL 399 (498)
Q Consensus 334 ~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~ 399 (498)
.||.|-+||. ......+...... .......+..++|.+-. .| .+++.+ ..++|++||+..
T Consensus 215 ~dg~iAiwD~~rnienpl~~i~~~--~N~~~~~l~~~aycPtr---tg-lla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIENPLQIILRN--ENKKPKQLFALAYCPTR---TG-LLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhccHHHHHhhC--CCCcccceeeEEeccCC---cc-hhhhhccCcceEEEecccc
Confidence 4999999993 3222222211111 12222346667766321 23 344444 567899999863
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00049 Score=69.42 Aligned_cols=202 Identities=10% Similarity=0.143 Sum_probs=117.3
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCC-eEEEEEcCCCCEEEEEcCCC-----eEEEEEccCCcccc-
Q 010871 279 RFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSE-VTSMDHDHTGQLLFCGDAQG-----CIYSISMESHSGAL- 350 (498)
Q Consensus 279 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~-i~~l~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~- 350 (498)
+|++ ++..++.|+.+|.|.+++-. -+.+..++ ++.. |..+-...+..+|++.++|+ .|++|+++...+..
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3444 56788899999999888742 33334442 3333 55554444445777666554 58999997653222
Q ss_pred ---cccccccc--cCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEe
Q 010871 351 ---SRSHRHRT--TGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFC 425 (498)
Q Consensus 351 ---~~~~~~~~--~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (498)
...+.... ......++.++.++ .+-+.+++|-.+|.|..+.-+-....-...........+++.+ .+.
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs-----~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL--~~~ 180 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVS-----EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL--ALR 180 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEE-----ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee--EEe
Confidence 11111111 11234455555544 7888999999999999986442211111222233333444444 333
Q ss_pred eeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 426 PLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 426 ~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
. ++..++-...-..|.+|.+.... .....+..|..++.|..|++....+++++ +..|.+|+.++
T Consensus 181 ~-----d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 181 S-----DGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred c-----CCceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence 2 56552222233569999998532 34555788889999999997666455554 34688887654
No 336
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.02 E-value=0.0043 Score=56.61 Aligned_cols=150 Identities=11% Similarity=0.133 Sum_probs=101.4
Q ss_pred EEEecCCCCEEEEEeC-----CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEe-----------------
Q 010871 193 LKFGHMSSDLLAYGAS-----DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS----------------- 250 (498)
Q Consensus 193 v~~sp~~~~~lasg~~-----dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s----------------- 250 (498)
-.||+ +|++|++.-. .|.|-|||.......+..+..|.-.-..+.+.|||+.|+.+-
T Consensus 56 g~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSP-DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcC-CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 67999 9999888743 589999999955788888988887778899999998777652
Q ss_pred -CCCcEEEEECCCCcEEEEEec----C-CCeEEEEEEcCCCcEEEEEeCCCc-------EEEEEcCCCcEEEEee-----
Q 010871 251 -MDKTVRVWELTKGDCIRVIYG----V-SSQLCIRFHPVNNNFLSVGNANKE-------ITVFNFSTGRIIKKLV----- 312 (498)
Q Consensus 251 -~dg~v~iwd~~~~~~~~~~~~----~-~~v~~i~~~~~~~~~l~~g~~dg~-------i~iwd~~~~~~~~~~~----- 312 (498)
.+-++..-|..+|+.+..... + -++.-+++.+++ ..++..-..|. |.+++ .++.+..+.
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~ 211 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQ 211 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHH
Confidence 123455667777777666432 2 256777777753 34433333322 23333 233232221
Q ss_pred ---cCCCeEEEEEcCCCCEEEEEc-CCCeEEEEEccCC
Q 010871 313 ---VDSEVTSMDHDHTGQLLFCGD-AQGCIYSISMESH 346 (498)
Q Consensus 313 ---~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~ 346 (498)
....+-+|+++.++..+++.+ ..|.+.+||..+.
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 457899999999998776555 5668999987644
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.02 E-value=0.00062 Score=67.84 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=98.6
Q ss_pred CCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEe-------------------------------------
Q 010871 208 SDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS------------------------------------- 250 (498)
Q Consensus 208 ~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s------------------------------------- 250 (498)
..+.+.+.|..+ .+...++.-- +....++++++|+++++.+
T Consensus 213 y~~~vSvID~et-meV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~ 290 (635)
T PRK02888 213 YRSLFTAVDAET-MEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKF 290 (635)
T ss_pred eeEEEEEEECcc-ceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCE
Confidence 345566666665 4444433321 1334566777777766654
Q ss_pred ---CCCcEEEEECCC-----CcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE------------EEE
Q 010871 251 ---MDKTVRVWELTK-----GDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI------------IKK 310 (498)
Q Consensus 251 ---~dg~v~iwd~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~------------~~~ 310 (498)
.++.|.+.|..+ .+.+..+.....+..+.++|++..+++++..+.+|.|+|+.+.+. +.+
T Consensus 291 ~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 291 KTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred EEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 234588888887 466777777788889999999888888888899999999988653 444
Q ss_pred eecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 311 LVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 311 ~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
..........+|+++|..+.+-..|..|..|++..
T Consensus 371 vevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 45555667788999999888889999999999875
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.02 E-value=0.0055 Score=54.96 Aligned_cols=208 Identities=13% Similarity=0.190 Sum_probs=114.6
Q ss_pred CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec--CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccc
Q 010871 273 SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV--DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGAL 350 (498)
Q Consensus 273 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 350 (498)
..+..+.|.|+.+.++++....+.|..++. +|+.++.+.. ......|++..++.++++.-.++.+.+++++..+...
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 358899999988889999999999999997 5888888753 3568899998888777777679999999986544332
Q ss_pred ccc----ccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccc-eeeEeEeeccC---Cceee-eE
Q 010871 351 SRS----HRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQG-YLTFRCSLKLA---PRVHS-IR 421 (498)
Q Consensus 351 ~~~----~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~---~~~~~-~~ 421 (498)
... ........+...+..++|. +.++.|+++-...-..+|.+...... ........... ..... -.
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D-----~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYD-----PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEE-----TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred chhhceEEecccccCCCcceEEEEEc-----CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 211 1111112344456666666 88888888888777888877641100 00111111111 01111 11
Q ss_pred EEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC--C-----CCCeEEEEEcCCCCEEEEEeCCCeEEEe
Q 010871 422 ASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG--H-----RFPVVAVAWNHGENLLASSDLYGIVIVW 492 (498)
Q Consensus 422 ~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~--h-----~~~V~~l~~sp~~~~l~s~~~Dg~i~iW 492 (498)
..+.| ..+.+++....+..|.++|.. ++......+.. | -...-.|+|.++|++.+++ .-+..+++
T Consensus 176 l~~~p----~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 176 LSYDP----RTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEET----TTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred eEEcC----CCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 24444 466777888888889999954 33222223322 1 1347789999999766654 55555554
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.98 E-value=0.0068 Score=61.08 Aligned_cols=145 Identities=14% Similarity=0.273 Sum_probs=89.2
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceeEEeecCCCC-----eE-EEEEccCCCEEEEEe---------CCCcEEEEECCCCcE
Q 010871 201 DLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKD-----VT-DFDFSSNNQYIASSS---------MDKTVRVWELTKGDC 265 (498)
Q Consensus 201 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~-----V~-~l~~s~~~~~l~s~s---------~dg~v~iwd~~~~~~ 265 (498)
..++.++.+|.|.-+|..+ ++.+..+...... +. ...+. + ..++.++ .+|.|...|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~T-G~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAET-GKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCC-CCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 6788888899999999988 6666655432211 11 11221 2 3455543 367899999999999
Q ss_pred EEEEecCCC---------------------e-EEEEEEcCCCcEEEEEeCCC------------------cEEEEEcCCC
Q 010871 266 IRVIYGVSS---------------------Q-LCIRFHPVNNNFLSVGNANK------------------EITVFNFSTG 305 (498)
Q Consensus 266 ~~~~~~~~~---------------------v-~~i~~~~~~~~~l~~g~~dg------------------~i~iwd~~~~ 305 (498)
+..+..... + ...++.+ ....++.++.++ .|.-+|..+|
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 888765311 0 0123333 234666676554 7999999999
Q ss_pred cEEEEeecCC-Ce------EEEEEc----CCCC---EEEEEcCCCeEEEEEccCCccc
Q 010871 306 RIIKKLVVDS-EV------TSMDHD----HTGQ---LLFCGDAQGCIYSISMESHSGA 349 (498)
Q Consensus 306 ~~~~~~~~~~-~i------~~l~~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~ 349 (498)
+.+..++... .. ....+. -++. .+++++.+|.++.+|..+.+..
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~ 324 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLI 324 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEe
Confidence 9998875321 11 001111 1233 6788889999999887655433
No 340
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.98 E-value=0.0011 Score=50.38 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=76.5
Q ss_pred eEEEEEcc---CC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEE
Q 010871 234 VTDFDFSS---NN-QYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIK 309 (498)
Q Consensus 234 V~~l~~s~---~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 309 (498)
|++|++.. +| +.|+.||.|..||+|+-+ ..+..+.....+.+++.... ..++.+..+|+|-+|+- .+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG--GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC--CEEEEEecCCEEEEEeC--cceee
Confidence 56666654 33 589999999999999844 78888888889988888763 57888899999999984 55666
Q ss_pred EeecCCCeEEEEEcCCC----CEEEEEcCCCeEE
Q 010871 310 KLVVDSEVTSMDHDHTG----QLLFCGDAQGCIY 339 (498)
Q Consensus 310 ~~~~~~~i~~l~~~~~~----~~l~~~~~dg~i~ 339 (498)
..+....+.++++..-. ..|++|-.+|.|-
T Consensus 76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 66666667777764322 2788998888774
No 341
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.97 E-value=0.013 Score=55.61 Aligned_cols=214 Identities=15% Similarity=0.143 Sum_probs=120.0
Q ss_pred cEEEEECCCCcEEEEEecC--CCeEEEEEEc--C----CCcEEEEEeC---------C-CcEEEEEcCCC-------cEE
Q 010871 254 TVRVWELTKGDCIRVIYGV--SSQLCIRFHP--V----NNNFLSVGNA---------N-KEITVFNFSTG-------RII 308 (498)
Q Consensus 254 ~v~iwd~~~~~~~~~~~~~--~~v~~i~~~~--~----~~~~l~~g~~---------d-g~i~iwd~~~~-------~~~ 308 (498)
.|++.|..+.+.+..+... ..+.+++... . ...++++|+. . |.|.++++... +.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5888888888777665543 3444433322 1 1567777753 2 88999999884 223
Q ss_pred EEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc
Q 010871 309 KKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ 388 (498)
Q Consensus 309 ~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~ 388 (498)
.....+++|.+++-. .+. |+++. .+.|++|++.... .+.... .......+.++.. .++++++|..
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~-~l~~~~----~~~~~~~i~sl~~-------~~~~I~vgD~ 147 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK-TLLKKA----FYDSPFYITSLSV-------FKNYILVGDA 147 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS-SEEEEE----EE-BSSSEEEEEE-------ETTEEEEEES
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc-cchhhh----eecceEEEEEEec-------cccEEEEEEc
Confidence 334578899999876 334 44433 5889999987665 111110 1112224555543 3779999999
Q ss_pred CCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCC---------Ccccee
Q 010871 389 DGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP---------KHSCVN 459 (498)
Q Consensus 389 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~---------~~~~~~ 459 (498)
...+.++..+..... +. ....-........+.+-+ +++.++++..+|.+.++..... ......
T Consensus 148 ~~sv~~~~~~~~~~~-l~--~va~d~~~~~v~~~~~l~-----d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~ 219 (321)
T PF03178_consen 148 MKSVSLLRYDEENNK-LI--LVARDYQPRWVTAAEFLV-----DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERIS 219 (321)
T ss_dssp SSSEEEEEEETTTE--EE--EEEEESS-BEEEEEEEE------SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEE
T ss_pred ccCEEEEEEEccCCE-EE--EEEecCCCccEEEEEEec-----CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEE
Confidence 899998866542111 11 111122223333334433 5579999999999999988631 111122
Q ss_pred eecCCCCCeEEE---EEcCC--C------CEEEEEeCCCeEEE
Q 010871 460 KLQGHRFPVVAV---AWNHG--E------NLLASSDLYGIVIV 491 (498)
Q Consensus 460 ~~~~h~~~V~~l---~~sp~--~------~~l~s~~~Dg~i~i 491 (498)
.+. ....|+++ ++.|. + ..++.++.+|.|.+
T Consensus 220 ~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 220 SFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 222 23557777 55552 2 24778888998874
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.93 E-value=0.01 Score=56.33 Aligned_cols=221 Identities=19% Similarity=0.251 Sum_probs=122.9
Q ss_pred cEEEEEcCCCCceeEEeec-CCCCeEEEE---EccC----CCEEEEEeC----------CCcEEEEECCCC-------cE
Q 010871 211 TLTVCTVSDPPKVIKLLNG-HSKDVTDFD---FSSN----NQYIASSSM----------DKTVRVWELTKG-------DC 265 (498)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~-h~~~V~~l~---~s~~----~~~l~s~s~----------dg~v~iwd~~~~-------~~ 265 (498)
.|++.|..+ .+.+..+.- ....+.+++ +..+ ..+|+.|.. .|.|.++++... +.
T Consensus 3 ~i~l~d~~~-~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTT-FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTT-SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCC-CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 477788766 444444331 223344443 3322 457776643 288999999884 22
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc-EEEEeec--CCCeEEEEEcCCCCEEEEEcCCCeEEEEE
Q 010871 266 IRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR-IIKKLVV--DSEVTSMDHDHTGQLLFCGDAQGCIYSIS 342 (498)
Q Consensus 266 ~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~--~~~i~~l~~~~~~~~l~~~~~dg~i~i~d 342 (498)
+......+++.+++-. ++. |+++ .++.|.+|++...+ ....-.. ...+.++... ++++++|+....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence 3334455778887776 334 4444 45899999998887 5544433 3456666554 66999999988888886
Q ss_pred ccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccc-----cc-eeeEeEeeccCCc
Q 010871 343 MESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEI-----QG-YLTFRCSLKLAPR 416 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~-----~~-~~~~~~~~~~~~~ 416 (498)
++.....+..... ......++++.+. .+++.++++..+|.+.++...... .. .+...........
T Consensus 156 ~~~~~~~l~~va~----d~~~~~v~~~~~l-----~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~ 226 (321)
T PF03178_consen 156 YDEENNKLILVAR----DYQPRWVTAAEFL-----VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDI 226 (321)
T ss_dssp EETTTE-EEEEEE----ESS-BEEEEEEEE------SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-
T ss_pred EEccCCEEEEEEe----cCCCccEEEEEEe-----cCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCc
Confidence 6543222221111 1223345555543 566799999999999999886321 11 3344445555555
Q ss_pred eeeeEE-EEeeeeeccC----CCEEEEEeCCCcEEEE
Q 010871 417 VHSIRA-SFCPLLSLEK----GEYIVAGSEDSNVYFY 448 (498)
Q Consensus 417 ~~~~~~-~~~~~~~~~~----~~~l~~gs~dg~I~iw 448 (498)
+..+.. ...|. .... ...++.++.+|.|.+.
T Consensus 227 v~~~~~~~l~~~-~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 227 VNSFRRGSLIPR-SGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE--SS---SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cceEEEEEeeec-CCCCcccccceEEEEecCCEEEEE
Confidence 444411 22221 0001 1358888889988843
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.93 E-value=0.0056 Score=60.08 Aligned_cols=142 Identities=19% Similarity=0.236 Sum_probs=80.1
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
.-....+.++| ++++++. +.||...|+.... .+.... +.-....|.+.+ .+|+-...++|.|+.--+....
T Consensus 32 ~~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~-~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 32 EIYPQSLSHNP-NGRFVLV-CGDGEYEIYTALA-WRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp SS--SEEEE-T-TSSEEEE-EETTEEEEEETTT-TEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred CcCCeeEEECC-CCCEEEE-EcCCEEEEEEccC-Cccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence 44578899999 8998888 4577788888543 222222 233568898855 5666666888999632222222
Q ss_pred EEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEcc
Q 010871 267 RVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISME 344 (498)
Q Consensus 267 ~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~ 344 (498)
..+.....+..+-. +.+|...+. +.|.+||+.+++.+..+.... |..+.|++++.+++..+.+ .+++++.+
T Consensus 103 k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 103 KSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp -----SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred eEEcCCcccceEEc----CcEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 23333333333322 456655544 489999999999999997664 8999999999999988755 56665543
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.0064 Score=60.41 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=96.5
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcE---EEE-
Q 010871 193 LKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDC---IRV- 268 (498)
Q Consensus 193 v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~---~~~- 268 (498)
-+++. .+++++.|+.-|.+++|+-..+.-......+-.+.+..+..+++..++|.|+..|.|.++-+..+.. +..
T Consensus 39 Tc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 39 TCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 33444 7899999999999999998863333444445556677778888888888999999999998775432 111
Q ss_pred -Ee--cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-----cEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 269 -IY--GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-----RIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 269 -~~--~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
.. +...|++++|++ +...+++|...|+|..-.+... .....+...+.|..+.... .+|++++....+
T Consensus 118 ~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~r~~ 192 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLTRCI 192 (726)
T ss_pred cccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhhhhh
Confidence 11 134688999999 4578899999999998887762 1122234567777777653 344444433333
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.88 E-value=0.0016 Score=67.35 Aligned_cols=132 Identities=14% Similarity=0.207 Sum_probs=88.2
Q ss_pred eCCCcEEEEEcCCCCceeEEeecCCCC-eEEEEEcc-----CCCEEEEEeCCCcEEEEECCCC--cEEE----EEecCCC
Q 010871 207 ASDGTLTVCTVSDPPKVIKLLNGHSKD-VTDFDFSS-----NNQYIASSSMDKTVRVWELTKG--DCIR----VIYGVSS 274 (498)
Q Consensus 207 ~~dg~i~iwd~~~~~~~~~~~~~h~~~-V~~l~~s~-----~~~~l~s~s~dg~v~iwd~~~~--~~~~----~~~~~~~ 274 (498)
.....|+-.|+.. ++.+.....|... |..++=.. +....+.|-.+..+..||.+-. +++. .+.....
T Consensus 501 ~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 3457788889988 8899988877654 55544221 1234566767788999998843 2222 1112234
Q ss_pred eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE-e-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEc
Q 010871 275 QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK-L-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISM 343 (498)
Q Consensus 275 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~ 343 (498)
..|++-. +..+|++|+.+|.|++||- .|+.-++ + ....+|.+|+.+.+|+++++.+ +..|.+++.
T Consensus 580 Fs~~aTt--~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 580 FSCFATT--EDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ceEEEec--CCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 4556554 4558999999999999994 3333222 3 4578999999999999887765 456666665
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.82 E-value=0.0033 Score=47.77 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=74.1
Q ss_pred EEEEEEecCC---CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 190 VTILKFGHMS---SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 190 V~~v~~sp~~---~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
|++|++...+ .+.|++|+.|..|+||+-. +.+..+. -.+.|++|.-... ..++.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 5666665533 3689999999999999864 4555555 4567888887765 57889999999999974 4556
Q ss_pred EEEecCCCeEEEEEEcC---CCcEEEEEeCCCcEE
Q 010871 267 RVIYGVSSQLCIRFHPV---NNNFLSVGNANKEIT 298 (498)
Q Consensus 267 ~~~~~~~~v~~i~~~~~---~~~~l~~g~~dg~i~ 298 (498)
..++....+.++.+... +..-|++|-.+|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 66776666777766543 345788888888764
No 347
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.00054 Score=67.66 Aligned_cols=115 Identities=17% Similarity=0.286 Sum_probs=85.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEe-cCCCeE-EEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE
Q 010871 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIY-GVSSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~-~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 307 (498)
|...|.--++...+++|+.|+.-|.+.+++-..++....-. +...++ .+..++ ...+++.|+..|.|.++-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 44455555566678899999999999999977665433322 233444 445555 668899999999999998766432
Q ss_pred E-----EEe--ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 308 I-----KKL--VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 308 ~-----~~~--~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
- ... .|...|++++|++++..+++|+..|.|....++.
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 111 2678899999999999999999999999988876
No 348
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.76 E-value=1.1e-05 Score=78.09 Aligned_cols=204 Identities=11% Similarity=0.157 Sum_probs=123.9
Q ss_pred CCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCCcEE--EEEecC-CCeEEEEEEcCCCcEEEEEe----CCCcEEEEE
Q 010871 231 SKDVTDFDFSSNN--QYIASSSMDKTVRVWELTKGDCI--RVIYGV-SSQLCIRFHPVNNNFLSVGN----ANKEITVFN 301 (498)
Q Consensus 231 ~~~V~~l~~s~~~--~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~-~~v~~i~~~~~~~~~l~~g~----~dg~i~iwd 301 (498)
...+.|+++.-+. ..++.|..+|.|.+-.+....-- ....++ ....+++|.+-+.+.|++|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3456777776544 46788999999998877643221 122222 45678999998888888874 356799999
Q ss_pred cCCC--cEEEE--e--ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEee
Q 010871 302 FSTG--RIIKK--L--VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFS 375 (498)
Q Consensus 302 ~~~~--~~~~~--~--~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 375 (498)
+.++ .+... + .......+++|..+.+++.+|.....+.++|++........ -....+..+.+.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--------vnTk~vqG~tVd--- 204 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--------VNTKYVQGITVD--- 204 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--------hhhhhcccceec---
Confidence 9876 22211 1 12345668999988889999999999999998743222111 111123334443
Q ss_pred EcC-CCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeC-CCcEEEEECCC
Q 010871 376 LLA-GGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE-DSNVYFYDLAK 452 (498)
Q Consensus 376 ~s~-~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-dg~I~iwd~~~ 452 (498)
| .++++++.. ||.|.+||.....+..+.......-...-.....+|+|- ....+++... .++|+++|+..
T Consensus 205 --p~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt----rtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 205 --PFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT----RTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred --CCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC----CcchhhhhccCcceEEEecccc
Confidence 5 577777666 999999994322222111111111111113445588873 3334555554 47899999863
No 349
>PF08145 BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR012953 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This N-terminal domain is found in BOP1-like WD40 proteins. Bop1 is a nucleolar protein involved in rRNA processing, thereby controlling the cell cycle []. It is required for the maturation of the 25S and 5.8S ribosomal RNAs. It may serve as an essential factor in ribosome formation that coordinates processing of the spacer regions in pre-rRNA. The Pes1-Bop1 complex has several components: BOP1, GRWD1, PES1, ORC6L, and RPL3 and is involved in ribosome biogenesis and altered chromosome segregation. The overexpression of BOP1 increases the percentage of multipolar spindles in human cells. Deregulation of the BOP1 pathway may contribute to colorectal tumourigenesis in humans []. Elevated levels of Bop1 induces Bop1/WDR12 and Bop1/Pes1 subcomplexes and the assembly and integrity of the PeBoW complex is highly sensitive to changes in Bop1 protein levels []. Nop7p-Erb1p-Ytm1p, found in yeast, is potentially the homologous complex of Pes1-Bop1-WDR12 as it is involved in the control of ribosome biogenesis and S phase entry. The integrity of the PeBoW complex is required for ribosome biogenesis and cell proliferation in mammalian cells []. In Giardia, the species specific cytoskeleton protein, beta-giardin, interacts with Bop1 []. ; GO: 0006364 rRNA processing, 0005634 nucleus
Probab=97.71 E-value=2.2e-05 Score=68.75 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=95.3
Q ss_pred cccCcccccCCccCCCCCCCCCCCCccCCCCCCCccceEeeecCCCCCCCcchHhhhhhhhccccccccceeeeee-ecC
Q 010871 9 TSTSPIEANNDNISDNNNNHKDNKNKENKENVIDPELFSCMLQPATADSDPDYIGVRRLLLFRKAESGVRRRLDWR-CNG 87 (498)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~ 87 (498)
..-+||+..-++|+.+.+.||....++-|+.|+.+ +-|...+.+++.+-+.+-....+..-. ...
T Consensus 71 ~~~dpy~~~vd~ft~~~~~~Pls~~pepKrrFiPS--------------K~E~kkV~Klv~aIr~G~i~~~~~~~~~~~~ 136 (260)
T PF08145_consen 71 PGYDPYEPYVDWFTSEDEIHPLSNAPEPKRRFIPS--------------KWEAKKVMKLVRAIRMGWIKPDKPKEEEEEP 136 (260)
T ss_pred CCCCCCCCeecccCCcccccccCCCCCCCcccCCC--------------HHHHHHHHHHHHHHHhCcCCccccccccccc
Confidence 44689999999999999999999999989888764 344555555542222222221111110 012
Q ss_pred ceeeEEeee--eecccC--CCCCCCCCCCCCCCCCccccCCCCCCcccccccccccccccCCCCCCCceeeeeecCCCCC
Q 010871 88 KGYVAYRNY--IRRPRN--WESQTPSYQSTPGNSGRWLPSSSPLSLLYEVDSWSSSRDLRSGNLASSHRTSFSSTASDSD 163 (498)
Q Consensus 88 ~~~~~~~~~--i~~~~~--~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (498)
..|+-+.+- ...... ...++| ..++|++.++|+||++|+++..+...|....+. .+...|.+.+...+
T Consensus 137 ~~ydlW~d~~~~~~~~~~~~~ipAP-K~~LPgh~eSYNPP~EYL~~~~E~~~w~~~~pe-------dR~~~fiP~k~~sL 208 (260)
T PF08145_consen 137 EFYDLWADDDDDEEKRRHPMHIPAP-KLKLPGHAESYNPPPEYLPTEEEKKEWEEMDPE-------DRKKNFIPQKFDSL 208 (260)
T ss_pred cccccccCcCccccccCCCCCCCCC-CCCCCCCccccCCchHhccCHHHHHHHHhcCch-------hccccccchhhhhh
Confidence 223333332 111111 223333 678999999999999999999999999988766 77778888888888
Q ss_pred CCccCCCCCcceeecceeeeecc
Q 010871 164 QPRRQGPEPAYSFVGMHCIFDQC 186 (498)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~h 186 (498)
| ..|.|.-. ...+|..|
T Consensus 209 R-----~Vp~Y~~~-i~ErFeRC 225 (260)
T PF08145_consen 209 R-----KVPAYENF-IKERFERC 225 (260)
T ss_pred h-----ccchHHHH-HHHHHHHh
Confidence 7 55666532 23444444
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.71 E-value=0.0064 Score=63.12 Aligned_cols=142 Identities=11% Similarity=0.131 Sum_probs=97.5
Q ss_pred CCEEEEE-eCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCC------CcEEEEEeCCCcEEEEEcCCCc--EEEE---
Q 010871 243 NQYIASS-SMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVN------NNFLSVGNANKEITVFNFSTGR--IIKK--- 310 (498)
Q Consensus 243 ~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~------~~~l~~g~~dg~i~iwd~~~~~--~~~~--- 310 (498)
.++|+.- .....|.-.|++.|+.+.....+..+.-..+.|+. ..-.++|-.+..+..||.+-.. ++..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 34578999999999999999988755444555531 2345567788999999998642 3321
Q ss_pred -eecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC
Q 010871 311 -LVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD 389 (498)
Q Consensus 311 -~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d 389 (498)
+.......|++-+.+| +||+|+.+|.|++||--. .. ....+.+...||..+..+ .||++|++.+.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g---~~----AKT~lp~lG~pI~~iDvt-----~DGkwilaTc~- 638 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG---KR----AKTALPGLGDPIIGIDVT-----ADGKWILATCK- 638 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc---hh----hhhcCCCCCCCeeEEEec-----CCCcEEEEeec-
Confidence 2245567788776665 699999999999998321 11 112235667899999887 89999887664
Q ss_pred CcEEEEEcc
Q 010871 390 GNLSFFSVA 398 (498)
Q Consensus 390 g~i~iwd~~ 398 (498)
..|.+++..
T Consensus 639 tyLlLi~t~ 647 (794)
T PF08553_consen 639 TYLLLIDTL 647 (794)
T ss_pred ceEEEEEEe
Confidence 467777754
No 351
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00023 Score=71.39 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=84.7
Q ss_pred EEEEEccCCCEEEEEeC----CCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE
Q 010871 235 TDFDFSSNNQYIASSSM----DKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK 310 (498)
Q Consensus 235 ~~l~~s~~~~~l~s~s~----dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 310 (498)
+-..|+|...+++.++. .|.|.|+- ++|++.+...-.-.+.+++|+| ..-.|+.|-.-|.+.+|...+.+.-..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeee
Confidence 34578888888887754 57888874 5666544433333456799999 557788888889999999876655444
Q ss_pred e-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCC
Q 010871 311 L-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESH 346 (498)
Q Consensus 311 ~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~ 346 (498)
. .|..+|..+.|+++|..++++..-|.+.+|..+..
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 3 68999999999999999999999999999988743
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.66 E-value=0.04 Score=51.05 Aligned_cols=229 Identities=14% Similarity=0.124 Sum_probs=119.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEE------------
Q 010871 242 NNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIK------------ 309 (498)
Q Consensus 242 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~------------ 309 (498)
.++.|+.|+.+| +.++++........+.....+..+...+.-+.+++. .|+.+.++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE--cCCccEEEEchhhcccccccccccccccc
Confidence 567899999998 899998444434444444458888888855444443 35999999987654433
Q ss_pred ---EeecCCCeEEEE--EcCCCCEEEEEcCCCeEEEEEccCCcccc-cccccccccCCCccceeeEEEeEeeEcCCCcEE
Q 010871 310 ---KLVVDSEVTSMD--HDHTGQLLFCGDAQGCIYSISMESHSGAL-SRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVL 383 (498)
Q Consensus 310 ---~~~~~~~i~~l~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l 383 (498)
.+.....+...+ -...+...++......|.+|.+....... ..... ..-...+..+.|. ++.+
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke----~~lp~~~~~i~~~-------~~~i 151 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKE----ISLPDPPSSIAFL-------GNKI 151 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEE----EEcCCCcEEEEEe-------CCEE
Confidence 222233444444 22333444444445588888876542222 11111 1122455666654 6677
Q ss_pred EEEEcCCcEEEEEccccccceeeEeEeec-----cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccce
Q 010871 384 LTCTQDGNLSFFSVALEIQGYLTFRCSLK-----LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCV 458 (498)
Q Consensus 384 ~t~s~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~ 458 (498)
+.|..+ ...+.|+.++............ .......+.+- ..+++.+|++- |..-.+.|... +....
T Consensus 152 ~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~Ll~~--~~~g~fv~~~G-~~~r~ 222 (275)
T PF00780_consen 152 CVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIF-----QLSDNEFLLCY--DNIGVFVNKNG-EPSRK 222 (275)
T ss_pred EEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEE-----EeCCceEEEEe--cceEEEEcCCC-CcCcc
Confidence 777655 4777888754322111000000 00001111111 11256666653 33334444432 21111
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 459 NKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 459 ~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
..+.- ...+.++++. ..+|+..+. +.|.||++.++
T Consensus 223 ~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~ 257 (275)
T PF00780_consen 223 STIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETG 257 (275)
T ss_pred cEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCC
Confidence 22222 2355666664 457877765 55999999876
No 353
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.65 E-value=0.09 Score=53.38 Aligned_cols=106 Identities=9% Similarity=0.078 Sum_probs=66.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCC-CCeE---E-------EEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHS-KDVT---D-------FDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~-~~V~---~-------l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
+..|+.++.++.|.-.|..+ ++.+..+.... ..+. + +++. +..++.++.|+.|...|..+|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~T-Gk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKT-GKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCC-CceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEee
Confidence 34666677778888888887 55555543211 1111 1 1222 34677788899999999999999887
Q ss_pred EecCC-----CeEE-EEEEcCCCcEEEEEe------CCCcEEEEEcCCCcEEEEe
Q 010871 269 IYGVS-----SQLC-IRFHPVNNNFLSVGN------ANKEITVFNFSTGRIIKKL 311 (498)
Q Consensus 269 ~~~~~-----~v~~-i~~~~~~~~~l~~g~------~dg~i~iwd~~~~~~~~~~ 311 (498)
..... .+.+ -... ++ .++++. .+|.|..+|.++|+.+..+
T Consensus 146 ~~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred cccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 65321 1111 1111 23 444443 2689999999999998876
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.65 E-value=0.0046 Score=60.40 Aligned_cols=163 Identities=13% Similarity=0.096 Sum_probs=99.9
Q ss_pred ceeEEeecCCCCeEEEEEccCCCEEEEEe---CC-CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCc-
Q 010871 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSS---MD-KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKE- 296 (498)
Q Consensus 222 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s---~d-g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~- 296 (498)
.....+..-...+..-+|+|+++.++-.+ .. ..+.++++.+++....+........-.|+|++..++++...||.
T Consensus 183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCc
Confidence 33444444455677788999987655432 22 35899999998877776655556678899999888888888876
Q ss_pred -EEEEEcCCCcEEEEeecC-CCeEEEEEcCCCCEEEEE-cCCCe--EEEEEccCCcccccccccccccCCCccceeeEEE
Q 010871 297 -ITVFNFSTGRIIKKLVVD-SEVTSMDHDHTGQLLFCG-DAQGC--IYSISMESHSGALSRSHRHRTTGKRKCPVTTVQY 371 (498)
Q Consensus 297 -i~iwd~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~-~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 371 (498)
|.++|+..++.. .+.+. +.-..=.|+|+|+.++-. +..|. |++++.+......... ......
T Consensus 263 ~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~------~~~~~~------ 329 (425)
T COG0823 263 DIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF------SGGGNS------ 329 (425)
T ss_pred cEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec------cCCCCc------
Confidence 556677766633 34333 233356799999977654 45554 5555554433211110 011010
Q ss_pred eEeeEcCCCcEEEEEEcC-Cc--EEEEEcc
Q 010871 372 RSFSLLAGGPVLLTCTQD-GN--LSFFSVA 398 (498)
Q Consensus 372 ~~~~~s~~~~~l~t~s~d-g~--i~iwd~~ 398 (498)
.-.++|+|++|+..+.. |. |.+.|+.
T Consensus 330 -~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 330 -NPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred -CccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 12344999999887753 44 4444444
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00026 Score=68.93 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=75.7
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeE-EEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVT-DFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~-~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
-.|.-+.|+| .-+++|++..+|.|.+.-++ -..+.++.-|...++ +++|.|||+.|+.|-.||+|++.|++++..+
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 3578899999 89999999999999998887 455666766777777 9999999999999999999999999999877
Q ss_pred EE--EecCCCeEEEEEEc
Q 010871 267 RV--IYGVSSQLCIRFHP 282 (498)
Q Consensus 267 ~~--~~~~~~v~~i~~~~ 282 (498)
.. +.....+.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 76 33345666666653
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.023 Score=55.20 Aligned_cols=197 Identities=11% Similarity=0.173 Sum_probs=132.5
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee-cCCCCeEEEEEccCCCEEEEEeC---CCcEEEEECCCCcE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN-GHSKDVTDFDFSSNNQYIASSSM---DKTVRVWELTKGDC 265 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~s~---dg~v~iwd~~~~~~ 265 (498)
-..+++++...+..++...++.|.+.|..+ ........ +. .-..++++++++.+..+.. ++++.+.|..+++.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~-~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTAT-NTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcc-cceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 356788884455667777779999999776 44444333 33 5678999999987776655 68899999999998
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEE-----EeecCCCeEEEEEcCCCCEEEEEcCC---Ce
Q 010871 266 IRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIK-----KLVVDSEVTSMDHDHTGQLLFCGDAQ---GC 337 (498)
Q Consensus 266 ~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~-----~~~~~~~i~~l~~~~~~~~l~~~~~d---g~ 337 (498)
+.+.........+++.|++...+++-..++.|.+.|........ ..........+.++++|..+.+.... +.
T Consensus 153 ~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 153 TATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 88866554458999999877677776789999999987666653 13344566788999999966655443 47
Q ss_pred EEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-CCcEEEEEcccc
Q 010871 338 IYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-DGNLSFFSVALE 400 (498)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-dg~i~iwd~~~~ 400 (498)
+...|............ .... ....+ ...|+|..+.+... .+.+.+.|..+.
T Consensus 233 v~~id~~~~~v~~~~~~-----~~~~-~~~~v-----~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 233 VLKIDTATGNVTATDLP-----VGSG-APRGV-----AVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred EEEEeCCCceEEEeccc-----cccC-CCCce-----eECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 77777654332211000 0000 11222 33388998888744 478888887643
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.64 E-value=0.036 Score=54.52 Aligned_cols=230 Identities=17% Similarity=0.217 Sum_probs=108.8
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC
Q 010871 225 KLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST 304 (498)
Q Consensus 225 ~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 304 (498)
+.+....-....+.++|+|++++.+ .||...|+.....+.... +.....+|.+ . +.+++-...++|.|+.--+
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~----G~g~~~vw~~-~-n~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF----GSGLSFVWSS-R-NRYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE----EE-SEEEE-T-S-SEEEEE-TTS-EEEEETTE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc----CceeEEEEec-C-ccEEEEECCCeEEEEEcCc
Confidence 3344455567899999999998885 577788887444433222 2334578887 3 3455565688899974333
Q ss_pred CcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEE
Q 010871 305 GRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLL 384 (498)
Q Consensus 305 ~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~ 384 (498)
.+....+..+..+..+-. |.+|.+.+.+ .|.+||+...... ... ...+|..+.|+ +++.+++
T Consensus 99 ~~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i--~~i-------~v~~vk~V~Ws-----~~g~~va 160 (443)
T PF04053_consen 99 NEVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLI--RRI-------DVSAVKYVIWS-----DDGELVA 160 (443)
T ss_dssp E-TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EE--EEE-------SS-E-EEEEE------TTSSEEE
T ss_pred cccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHccee--eEE-------ecCCCcEEEEE-----CCCCEEE
Confidence 333334444444555543 7777766544 8999998754321 111 11124555554 9999999
Q ss_pred EEEcCCcEEEEEcccc------cccee-eEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccc
Q 010871 385 TCTQDGNLSFFSVALE------IQGYL-TFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSC 457 (498)
Q Consensus 385 t~s~dg~i~iwd~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~ 457 (498)
..+.+ .+.+++.... ..+.. .+.........+.. +.|. +..++-.+.. .|+. +..|....
T Consensus 161 l~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkS--g~W~-------~d~fiYtT~~-~lkY--l~~Ge~~~ 227 (443)
T PF04053_consen 161 LVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKS--GCWV-------EDCFIYTTSN-HLKY--LVNGETGI 227 (443)
T ss_dssp EE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SE--EEEE-------TTEEEEE-TT-EEEE--EETTEEEE
T ss_pred EEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEE--EEEE-------cCEEEEEcCC-eEEE--EEcCCcce
Confidence 88766 6777665432 00100 01111111111211 2332 2233333333 4544 33333222
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 458 VNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 458 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+..+ ..++.=+...+..+.|.....|+.|..+.++
T Consensus 228 i~~l---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 228 IAHL---DKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEE----SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEc---CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 3332 4466677778877888889999998888764
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.61 E-value=0.00017 Score=43.33 Aligned_cols=37 Identities=32% Similarity=0.561 Sum_probs=33.3
Q ss_pred ceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 457 CVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 457 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
+...+..|...|.++.|++++.++++++.||.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778899999999999999999999999999996
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.57 E-value=0.051 Score=52.66 Aligned_cols=178 Identities=18% Similarity=0.235 Sum_probs=94.3
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccc-cccCCCccceeeEEEeEeeEcCCC---cEEEEEEcC
Q 010871 314 DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRH-RTTGKRKCPVTTVQYRSFSLLAGG---PVLLTCTQD 389 (498)
Q Consensus 314 ~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~s~~~---~~l~t~s~d 389 (498)
.++|++++.+ +=-++++|.++|.+.+.|++...-........ .........++++.|..+....|+ -.+++|+..
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 5788999986 44589999999999999997654333221111 112345567889999887776666 578999999
Q ss_pred CcEEEEEccccccceeeEeEee---ccCCceeeeEEEEee------ee------eccC----CCEEEEEeCCCcEEEEEC
Q 010871 390 GNLSFFSVALEIQGYLTFRCSL---KLAPRVHSIRASFCP------LL------SLEK----GEYIVAGSEDSNVYFYDL 450 (498)
Q Consensus 390 g~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~------~~~~----~~~l~~gs~dg~I~iwd~ 450 (498)
|.+.+|.+--...+........ .....+..+.. +.. .+ -... ..++++ ..+..++++..
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~-i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~~ 242 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIP-INADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVFKP 242 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEE-EETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-T
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEE-EECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEEeC
Confidence 9999999863222222222111 12222222211 100 00 0001 123444 44667999999
Q ss_pred CCCCccceeeecCCCCCeEEEEEc-----CCCCEEEEEeCCCeEEEeecCC
Q 010871 451 AKPKHSCVNKLQGHRFPVVAVAWN-----HGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 451 ~~~~~~~~~~~~~h~~~V~~l~~s-----p~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.+.+. ..+.....-....+.+- ..+..|++-..+|.|+++.+..
T Consensus 243 ~~~k~--~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 243 PKSKG--AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp T---E--EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred CCCcc--cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 87553 33322221223334442 3466788888999999998753
No 360
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.57 E-value=0.099 Score=51.69 Aligned_cols=154 Identities=13% Similarity=0.171 Sum_probs=85.4
Q ss_pred EEEEEEecCCCCEEEEE-eCCC----cEEEEEcCCCCceeE-EeecCCCCeEEEEEccCCCEEEEEeCCC----------
Q 010871 190 VTILKFGHMSSDLLAYG-ASDG----TLTVCTVSDPPKVIK-LLNGHSKDVTDFDFSSNNQYIASSSMDK---------- 253 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg-~~dg----~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~s~dg---------- 253 (498)
+..+++|| ++++||.+ +..| .|+++|+.+ ++.+. .+... ....+.|.++++.|+....+.
T Consensus 126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCC-CcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 44678899 88888766 3344 499999998 44433 33322 123499999988777665433
Q ss_pred -cEEEEECCCCcE--EEEEecC--CC-eEEEEEEcCCCcEEEEEeCC---CcEEEEEcCCC-----cEEEEeecCCCeEE
Q 010871 254 -TVRVWELTKGDC--IRVIYGV--SS-QLCIRFHPVNNNFLSVGNAN---KEITVFNFSTG-----RIIKKLVVDSEVTS 319 (498)
Q Consensus 254 -~v~iwd~~~~~~--~~~~~~~--~~-v~~i~~~~~~~~~l~~g~~d---g~i~iwd~~~~-----~~~~~~~~~~~i~~ 319 (498)
.|..|.+.+... ...+... .. ...+..++++..+++..... ..+.+.++..+ ...........+..
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 378888887643 2334333 23 56788888665555544433 34788888764 33333333334433
Q ss_pred EEEcCCCCEEEEEc---CCCeEEEEEccCCc
Q 010871 320 MDHDHTGQLLFCGD---AQGCIYSISMESHS 347 (498)
Q Consensus 320 l~~~~~~~~l~~~~---~dg~i~i~d~~~~~ 347 (498)
..-+..+.+++... ..+.|...++....
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 33223444444332 23456666665443
No 361
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.56 E-value=0.00024 Score=42.64 Aligned_cols=38 Identities=39% Similarity=0.796 Sum_probs=34.0
Q ss_pred ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 222 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
.....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778999999999999999999999999999996
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.11 Score=50.67 Aligned_cols=245 Identities=11% Similarity=0.110 Sum_probs=145.1
Q ss_pred EEEEEEecCCC-CEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCE-EEEEeCCCcEEEEECCCCcEEE
Q 010871 190 VTILKFGHMSS-DLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQY-IASSSMDKTVRVWELTKGDCIR 267 (498)
Q Consensus 190 V~~v~~sp~~~-~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~-l~s~s~dg~v~iwd~~~~~~~~ 267 (498)
...+...+ ++ +..++-.....+.+.+... .........-...-..++.++.+.. .++...++.|.+.|..+.+...
T Consensus 33 ~~~v~~~~-~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 33 PGGVAVNP-DGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CceeEEcC-ccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 44566666 45 3333333333444444431 2212111111133456788888874 4455556889999988888888
Q ss_pred EEecCCCeEEEEEEcCCCcEEEEEe--CCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEc-CCCeEEEEEcc
Q 010871 268 VIYGVSSQLCIRFHPVNNNFLSVGN--ANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGD-AQGCIYSISME 344 (498)
Q Consensus 268 ~~~~~~~v~~i~~~~~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~ 344 (498)
..........+++.++++.+.++-. .++++.+.|..+++..........-..++++|+|..+++.. .++.|.++|..
T Consensus 111 ~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 111 SIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred EeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence 8776667889999998766666665 47999999999999888865443348999999999665554 78899999855
Q ss_pred CCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC---CcEEEEEccccccceeeEeEeeccCCceeeeE
Q 010871 345 SHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD---GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR 421 (498)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (498)
...... ... ......... -.. +.++++|.++.+.... +.+...|...+.. .......... ....
T Consensus 191 ~~~v~~-~~~-~~~~~~~~~-P~~-----i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v----~~~~~~~~~~-~~~~ 257 (381)
T COG3391 191 GNSVVR-GSV-GSLVGVGTG-PAG-----IAVDPDGNRVYVANDGSGSNNVLKIDTATGNV----TATDLPVGSG-APRG 257 (381)
T ss_pred Ccceec-ccc-ccccccCCC-Cce-----EEECCCCCEEEEEeccCCCceEEEEeCCCceE----EEeccccccC-CCCc
Confidence 432221 000 000011111 122 2334888866665544 4788888764321 1111111111 2222
Q ss_pred EEEeeeeeccCCCEEEEEeCC-CcEEEEECCCCC
Q 010871 422 ASFCPLLSLEKGEYIVAGSED-SNVYFYDLAKPK 454 (498)
Q Consensus 422 ~~~~~~~~~~~~~~l~~gs~d-g~I~iwd~~~~~ 454 (498)
....| +|.++.+.... +.+.+.|..+..
T Consensus 258 v~~~p-----~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 258 VAVDP-----AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred eeECC-----CCCEEEEEecCCCeEEEEeCCCCc
Confidence 34454 89888887554 789999988743
No 363
>PHA02713 hypothetical protein; Provisional
Probab=97.51 E-value=0.017 Score=59.17 Aligned_cols=216 Identities=6% Similarity=0.025 Sum_probs=110.1
Q ss_pred cEEEEECCCCcEEEEEecCCC--eEEEEEEcCCCcEEEEEeCC------CcEEEEEcCCCcEEEEee--cCCCeEEEEEc
Q 010871 254 TVRVWELTKGDCIRVIYGVSS--QLCIRFHPVNNNFLSVGNAN------KEITVFNFSTGRIIKKLV--VDSEVTSMDHD 323 (498)
Q Consensus 254 ~v~iwd~~~~~~~~~~~~~~~--v~~i~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~--~~~~i~~l~~~ 323 (498)
.+..||..+++....-.-... -.+++.. ++.++++|+.+ ..+..||..+..-...-. ....-.+++ .
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-V 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-E
Confidence 467788777653322111111 1223332 45677777753 347788887765322111 111111222 2
Q ss_pred CCCCEEEEEcCCC-----eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC--------
Q 010871 324 HTGQLLFCGDAQG-----CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG-------- 390 (498)
Q Consensus 324 ~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg-------- 390 (498)
-+|.+.+.|+.++ .+..||....+-........ .......+. -++...+.|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~-----~r~~~~~~~-------~~g~IYviGG~~~~~~~~~~~ 417 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPI-----ALSSYGMCV-------LDQYIYIIGGRTEHIDYTSVH 417 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCc-----ccccccEEE-------ECCEEEEEeCCCccccccccc
Confidence 3567778888754 37778776443222111110 000011111 3577777777653
Q ss_pred ---------------cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC------CcEEEEE
Q 010871 391 ---------------NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED------SNVYFYD 449 (498)
Q Consensus 391 ---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d------g~I~iwd 449 (498)
.+..||..+.. +..............+.. -++++.+.|+.+ ..+..||
T Consensus 418 ~~~~~~~~~~~~~~~~ve~YDP~td~-----W~~v~~m~~~r~~~~~~~------~~~~IYv~GG~~~~~~~~~~ve~Yd 486 (557)
T PHA02713 418 HMNSIDMEEDTHSSNKVIRYDTVNNI-----WETLPNFWTGTIRPGVVS------HKDDIYVVCDIKDEKNVKTCIFRYN 486 (557)
T ss_pred ccccccccccccccceEEEECCCCCe-----EeecCCCCcccccCcEEE------ECCEEEEEeCCCCCCccceeEEEec
Confidence 35667765431 111111111111111111 167777777754 2478899
Q ss_pred CCC-CCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC--eEEEeecCCC
Q 010871 450 LAK-PKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYG--IVIVWKRAKT 497 (498)
Q Consensus 450 ~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg--~i~iW~~~~~ 497 (498)
..+ .+...+..+.........+.+ ++.+.++||.|| .+..||..+.
T Consensus 487 p~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 487 TNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 998 677666666554444444444 678889999888 6777777653
No 364
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.47 E-value=0.12 Score=50.17 Aligned_cols=147 Identities=12% Similarity=0.142 Sum_probs=92.9
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCC-ce--eEEeecCCCCeEEEEEcc-----CCCEEEEEeCCCcEEEEECCC--Cc--
Q 010871 197 HMSSDLLAYGASDGTLTVCTVSDPP-KV--IKLLNGHSKDVTDFDFSS-----NNQYIASSSMDKTVRVWELTK--GD-- 264 (498)
Q Consensus 197 p~~~~~lasg~~dg~i~iwd~~~~~-~~--~~~~~~h~~~V~~l~~s~-----~~~~l~s~s~dg~v~iwd~~~--~~-- 264 (498)
+.+.+.|++|+..|.++||+..... +. +..-..-..+|..|..-. +...|+. =.-..+.||.+.. |.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 3456799999999999999986532 11 111122456888887642 2234444 3456788887731 11
Q ss_pred -----EEEEEecC---CCeEEEEEEcCC----CcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEE
Q 010871 265 -----CIRVIYGV---SSQLCIRFHPVN----NNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 265 -----~~~~~~~~---~~v~~i~~~~~~----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~ 332 (498)
.+..+..| .....+++-|-+ ..++.+-+.||.+.+++-+.......+..---...+++.+..+.|+++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEe
Confidence 22223333 334444444433 468888999999999997655544444433334457788888899999
Q ss_pred cCCCeEEEEEcc
Q 010871 333 DAQGCIYSISME 344 (498)
Q Consensus 333 ~~dg~i~i~d~~ 344 (498)
+.+..+..|...
T Consensus 193 sss~~l~~Yky~ 204 (418)
T PF14727_consen 193 SSSWTLECYKYQ 204 (418)
T ss_pred cCceeEEEecHH
Confidence 999999998753
No 365
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.0026 Score=62.11 Aligned_cols=143 Identities=13% Similarity=0.150 Sum_probs=87.6
Q ss_pred EEEEEEecCCCC-EEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEe-CCCc--EEEEECCCCcE
Q 010871 190 VTILKFGHMSSD-LLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS-MDKT--VRVWELTKGDC 265 (498)
Q Consensus 190 V~~v~~sp~~~~-~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s-~dg~--v~iwd~~~~~~ 265 (498)
-..-+|+| +|+ ++.+...||...||-.+...+....+..-.+.-..=.|+|||++|+-.+ ..|. |.+.+.+.+..
T Consensus 240 ~~~P~fsp-DG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 240 NGAPAFSP-DGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred cCCccCCC-CCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 44568999 555 4555566776555544432333444543333334678999999887654 4444 55666666655
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEeCCCc--EEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEc
Q 010871 266 IRVIYGVSSQLCIRFHPVNNNFLSVGNANKE--ITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 266 ~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 333 (498)
.+.......-..-.|+|++..+++....+|. |.+.|+.++..++.+........-.+.+++..+...+
T Consensus 319 ~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEec
Confidence 3333333333378899988777777755565 6677776666566666555566667788887665544
No 366
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.29 E-value=0.041 Score=56.32 Aligned_cols=235 Identities=13% Similarity=0.137 Sum_probs=120.5
Q ss_pred CCCEEEEEeCCC------cEEEEEcCCCC-ceeEEeecCCCCeEEEEEccCCCEEEEEeCC-C-----cEEEEECCCCcE
Q 010871 199 SSDLLAYGASDG------TLTVCTVSDPP-KVIKLLNGHSKDVTDFDFSSNNQYIASSSMD-K-----TVRVWELTKGDC 265 (498)
Q Consensus 199 ~~~~lasg~~dg------~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d-g-----~v~iwd~~~~~~ 265 (498)
.+.+++.||.++ .+..+|..+.. .....+. +...-.+++.. ++...++|+.| | ++-.||..+.+-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 456777777763 57778877631 1111222 22233444444 45678888888 3 466778777663
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEeCCCc-----EEEEEcCCCcEEEEeecCCCeEEE-EEcCCCCEEEEEcCCC---
Q 010871 266 IRVIYGVSSQLCIRFHPVNNNFLSVGNANKE-----ITVFNFSTGRIIKKLVVDSEVTSM-DHDHTGQLLFCGDAQG--- 336 (498)
Q Consensus 266 ~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~-----i~iwd~~~~~~~~~~~~~~~i~~l-~~~~~~~~l~~~~~dg--- 336 (498)
...-.-...-.......-++.+.++|+.||. |-.||..+.+-...-......... ...-+|.+.++|+.++
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 3311111111112222225678888988864 677887765533322221121111 1223677888888655
Q ss_pred ---eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCc-----EEEEEccccccceeeEe
Q 010871 337 ---CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGN-----LSFFSVALEIQGYLTFR 408 (498)
Q Consensus 337 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~-----i~iwd~~~~~~~~~~~~ 408 (498)
.+..||..+..-......... ... ..+.. -++.+.+.|+.|+. +..||..+..- .
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~--R~~----~g~a~------~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-----~ 504 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTR--RSG----FGVAV------LNGKIYVVGGFDGTSALSSVERYDPETNQW-----T 504 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccc--ccc----ceEEE------ECCEEEEECCccCCCccceEEEEcCCCCce-----e
Confidence 456676654443322221110 111 11221 46778888888773 56677664421 1
Q ss_pred EeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC-----cEEEEECCCCCccce
Q 010871 409 CSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS-----NVYFYDLAKPKHSCV 458 (498)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg-----~I~iwd~~~~~~~~~ 458 (498)
.............+. . -++...++|+.|| +|..||..+.++...
T Consensus 505 ~v~~m~~~rs~~g~~--~----~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 505 MVAPMTSPRSAVGVV--V----LGGKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred EcccCccccccccEE--E----ECCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 111111111111111 1 1788888888876 577888777665433
No 367
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.28 E-value=0.02 Score=58.57 Aligned_cols=227 Identities=13% Similarity=0.180 Sum_probs=125.1
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCcEEEEE--ecCCCeEEEEEEcCCCcEEEEEeCC------CcEEEEEcCCCcE
Q 010871 242 NNQYIASSSMD------KTVRVWELTKGDCIRVI--YGVSSQLCIRFHPVNNNFLSVGNAN------KEITVFNFSTGRI 307 (498)
Q Consensus 242 ~~~~l~s~s~d------g~v~iwd~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~ 307 (498)
.+..++.|+.+ ..+..+|..++...... .......+++... +.+.++|+.+ ..+..||..+++-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCce
Confidence 34566666666 35778888877443332 2223344556654 4788888888 3577888887774
Q ss_pred EEEeecC--CCeEEEEEcCCCCEEEEEcCCCe-----EEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC
Q 010871 308 IKKLVVD--SEVTSMDHDHTGQLLFCGDAQGC-----IYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG 380 (498)
Q Consensus 308 ~~~~~~~--~~i~~l~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~ 380 (498)
...-... ..-.+++ .-+|.+.++|+.||. +-.||.....-...... .......... .-+|
T Consensus 362 ~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m--------~~~r~~~gv~----~~~g 428 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM--------LTRRSGHGVA----VLGG 428 (571)
T ss_pred eccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCC--------CcceeeeEEE----EECC
Confidence 3322211 1111222 236788899999875 55666554332222111 1111111111 1468
Q ss_pred cEEEEEEcCCc------EEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC-----cEEEEE
Q 010871 381 PVLLTCTQDGN------LSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS-----NVYFYD 449 (498)
Q Consensus 381 ~~l~t~s~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg-----~I~iwd 449 (498)
...++|+.++. +..||..++. +............+.++. -++.+.+.|+.|+ +|..||
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~-----W~~~~~M~~~R~~~g~a~------~~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNT-----WTLIAPMNTRRSGFGVAV------LNGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCc-----eeecCCcccccccceEEE------ECCEEEEECCccCCCccceEEEEc
Confidence 88888886654 5667766441 111111111111111111 1788888888876 388899
Q ss_pred CCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEeecCC
Q 010871 450 LAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYG-----IVIVWKRAK 496 (498)
Q Consensus 450 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg-----~i~iW~~~~ 496 (498)
..+.+...+..+......+-.+.+ ++.+.+.|+.|| +|..||..+
T Consensus 498 p~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 498 PETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred CCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 998777666555555554444444 467788888886 455666544
No 368
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.13 Score=46.29 Aligned_cols=171 Identities=14% Similarity=0.193 Sum_probs=112.0
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC--CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC
Q 010871 227 LNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV--SSQLCIRFHPVNNNFLSVGNANKEITVFNFST 304 (498)
Q Consensus 227 ~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 304 (498)
+.|-...|.++.|+|+.+.|++......-.||=...|+.++++... ...-.+.|.. ++.++++--.++.+.++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcC
Confidence 4455566999999999999999988888888877889999987644 4556778876 557777777888888887765
Q ss_pred CcEEEEe-----e-----c-CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeE
Q 010871 305 GRIIKKL-----V-----V-DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRS 373 (498)
Q Consensus 305 ~~~~~~~-----~-----~-~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 373 (498)
...+... . + +.....++|+|....|+++-+..-+.+|.+............. .......+.-...+.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~--~~~~~~~~f~~DvSg 237 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL--DPTADRDLFVLDVSG 237 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc--CcccccceEeecccc
Confidence 5322221 1 2 4567899999999999999888888887765332111111000 011112233333333
Q ss_pred eeEcC-CCcEEEEEEcCCcEEEEEcccc
Q 010871 374 FSLLA-GGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 374 ~~~s~-~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
+.+.+ .+..++-+..++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 44434 4556666667777777776643
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0016 Score=63.65 Aligned_cols=92 Identities=13% Similarity=0.236 Sum_probs=78.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCeE-EEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEE
Q 010871 231 SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV-SSQL-CIRFHPVNNNFLSVGNANKEITVFNFSTGRII 308 (498)
Q Consensus 231 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~-~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 308 (498)
...|.-+.|+|.-.+||.+..+|.|.+..+. -+.+.++..+ ..+. +++|.|+ ++++++|-.||+|++.|++++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~D-GkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPD-GKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCC-CCEEEEEecCCeEEEEEccCCCce
Confidence 3467889999999999999999999999988 7788888844 4565 9999996 689999999999999999999988
Q ss_pred EE--eecCCCeEEEEEcC
Q 010871 309 KK--LVVDSEVTSMDHDH 324 (498)
Q Consensus 309 ~~--~~~~~~i~~l~~~~ 324 (498)
.. +.....|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 87 45667788888863
No 370
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.19 E-value=0.4 Score=50.23 Aligned_cols=285 Identities=13% Similarity=0.134 Sum_probs=143.1
Q ss_pred cccEEEEEEecC--CCC---EEEEEeCCCcEEEEEcCCCCceeEE--eec--CCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 010871 187 KAAVTILKFGHM--SSD---LLAYGASDGTLTVCTVSDPPKVIKL--LNG--HSKDVTDFDFSSNNQYIASSSMDKTVRV 257 (498)
Q Consensus 187 ~~~V~~v~~sp~--~~~---~lasg~~dg~i~iwd~~~~~~~~~~--~~~--h~~~V~~l~~s~~~~~l~s~s~dg~v~i 257 (498)
...|.|+.++|. +.+ ++|.|..+..+.+.-.......... +.+ -...|.-..|-.|..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 457999999983 233 8899988777666544332322222 221 2234555666666789999999999876
Q ss_pred EECC--CCcEEE---EEecCCCeEEEEEEcCCCcEEEEEe----------------------------------------
Q 010871 258 WELT--KGDCIR---VIYGVSSQLCIRFHPVNNNFLSVGN---------------------------------------- 292 (498)
Q Consensus 258 wd~~--~~~~~~---~~~~~~~v~~i~~~~~~~~~l~~g~---------------------------------------- 292 (498)
+.+. +|+.-- ..-+..++.--.|...+...+++++
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~ 689 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLAS 689 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEE
Confidence 6544 442111 0111122222222222222222221
Q ss_pred -CCCcEEEEEcCCCc--EEEEeecCCCeEEEEEcCCCCEEEEEcCCC--------------eEEEEEccCCccccccccc
Q 010871 293 -ANKEITVFNFSTGR--IIKKLVVDSEVTSMDHDHTGQLLFCGDAQG--------------CIYSISMESHSGALSRSHR 355 (498)
Q Consensus 293 -~dg~i~iwd~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~ 355 (498)
..+.+++.-+..-+ .++++........+++.+....+.+.+... .++++|-++.+. ...++
T Consensus 690 ~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v--l~~he 767 (1096)
T KOG1897|consen 690 ANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV--LSSHE 767 (1096)
T ss_pred ecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE--Eeecc
Confidence 22333333332211 122233445556667766444444433221 233333222111 11010
Q ss_pred ccccCCCccceeeEEEeEeeEcCC-CcEEEEEEc----------CCcEEEEEccccccceeeEeEeeccCCceeeeEEEE
Q 010871 356 HRTTGKRKCPVTTVQYRSFSLLAG-GPVLLTCTQ----------DGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASF 424 (498)
Q Consensus 356 ~~~~~~~~~~i~~~~~~~~~~s~~-~~~l~t~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (498)
......+.++. ...+..+ +.++++|+. .|.|.+|.+... +.+.........+.+..+..
T Consensus 768 ----f~~~E~~~Si~--s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~--~~L~~v~e~~v~Gav~aL~~-- 837 (1096)
T KOG1897|consen 768 ----FERNETALSII--SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL--NSLELVAETVVKGAVYALVE-- 837 (1096)
T ss_pred ----ccccceeeeee--eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC--Cceeeeeeeeeccceeehhh--
Confidence 01111122221 1112244 667777753 467777777641 12222222222232222211
Q ss_pred eeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 425 CPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 425 ~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
-+|+++|.- +..|++|+..+.+ .++.-..|..++..+...-.|..++.|+.=+.+.+-.
T Consensus 838 ------fngkllA~I--n~~vrLye~t~~~--eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 838 ------FNGKLLAGI--NQSVRLYEWTTER--ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred ------hCCeEEEec--CcEEEEEEccccc--eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 267777644 4689999998853 3555567788899998888899999998777766543
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.042 Score=53.08 Aligned_cols=145 Identities=14% Similarity=0.242 Sum_probs=88.1
Q ss_pred cEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCE-------EEEEcCCCeEEEEEccCCcccccccccccc
Q 010871 286 NFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQL-------LFCGDAQGCIYSISMESHSGALSRSHRHRT 358 (498)
Q Consensus 286 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~-------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 358 (498)
-++..+.....|+-.|++.|+.+........|+-+.+.|+.+. -++|-.+..|.-|
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri----------------- 409 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRI----------------- 409 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEe-----------------
Confidence 3455566667788889999999998887777877777776531 1223333344444
Q ss_pred cCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEE
Q 010871 359 TGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVA 438 (498)
Q Consensus 359 ~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (498)
|.+-.....+.......+.... .|++.+. ....+||+
T Consensus 410 -------------------------------------DpRv~~~~kl~~~q~kqy~~k~-----nFsc~aT-T~sG~Ivv 446 (644)
T KOG2395|consen 410 -------------------------------------DPRVQGKNKLAVVQSKQYSTKN-----NFSCFAT-TESGYIVV 446 (644)
T ss_pred -------------------------------------cccccCcceeeeeecccccccc-----ccceeee-cCCceEEE
Confidence 4332211111111111111111 2222222 14568999
Q ss_pred EeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 439 GSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 439 gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
||.+|.|++||-.. ......+.+-..+|..|..+.+|++|+..+ +..+.+-+
T Consensus 447 gS~~GdIRLYdri~--~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 447 GSLKGDIRLYDRIG--RRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred eecCCcEEeehhhh--hhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 99999999999843 233456788889999999999999887555 44555544
No 372
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.12 E-value=0.13 Score=49.54 Aligned_cols=92 Identities=8% Similarity=0.139 Sum_probs=58.5
Q ss_pred ccCCCEEEEE---------eCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE
Q 010871 240 SSNNQYIASS---------SMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK 310 (498)
Q Consensus 240 s~~~~~l~s~---------s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 310 (498)
|||+++++.. +..+.+.|+|+++++...............|+|++. .++.. .++.|.+++..+++..+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~-~~~~v-~~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGK-YIAFV-RDNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSST-EEEEE-ETTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCC-eeEEE-ecCceEEEECCCCCeEEe
Confidence 5677776653 234678999999987655444456778899999765 44444 467899999887744332
Q ss_pred ee-c-----------------CCCeEEEEEcCCCCEEEEEc
Q 010871 311 LV-V-----------------DSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 311 ~~-~-----------------~~~i~~l~~~~~~~~l~~~~ 333 (498)
-. . -..-..+-|+|+++.|+...
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 21 1 11235688999999888653
No 373
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.11 E-value=0.32 Score=47.74 Aligned_cols=200 Identities=10% Similarity=0.110 Sum_probs=93.6
Q ss_pred EEEEECCCCcEEEEEe-cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee---cCCC-----eEEEEEcCC
Q 010871 255 VRVWELTKGDCIRVIY-GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV---VDSE-----VTSMDHDHT 325 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~-----i~~l~~~~~ 325 (498)
|+||+.. |+.+..+. ..+.+.++.|.. +. .|++-..||.++++|+. |+....+. .... +....+..+
T Consensus 63 I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 63 IQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence 6666643 44444433 226788999987 33 44455699999999986 33322221 1112 222233334
Q ss_pred CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccccccee
Q 010871 326 GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYL 405 (498)
Q Consensus 326 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~ 405 (498)
| +++-..++.+++..--................. .....+.......++.+....+....++.+.+.+-....
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~-~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~---- 211 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWT-KFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK---- 211 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccccCCCccc-ccccccccccceEeecCcceEEEEecCCEEEEEEccccc----
Confidence 4 333345566655532211101000000000000 000000000001122445555555566666644432110
Q ss_pred eEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCC-CCCeEEEEEcCCCC
Q 010871 406 TFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGH-RFPVVAVAWNHGEN 478 (498)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~ 478 (498)
...... .+..++.+++|++||.-..+|.+.+....-.+ .+..+... ......|.|.-+..
T Consensus 212 ------~i~~~~-----~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~--~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 212 ------QIDSDG-----PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE--KLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ------cccCCC-----CeEEEEECCCCCEEEEEECCCCEEEEECcccc--eeEEeecCcCCCCcEEEEECCCc
Confidence 011111 23334444599999999999999988765432 34444333 34566777775543
No 374
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.09 E-value=0.35 Score=47.81 Aligned_cols=112 Identities=15% Similarity=0.239 Sum_probs=70.4
Q ss_pred eEEEEEccCCCEEEEE-eCCC----cEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCC----------CcEE
Q 010871 234 VTDFDFSSNNQYIASS-SMDK----TVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNAN----------KEIT 298 (498)
Q Consensus 234 V~~l~~s~~~~~l~s~-s~dg----~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d----------g~i~ 298 (498)
+..+.++|+|++|+-+ +..| .|++.|+.+|+.+...-.......+.|.+++..++.+...+ ..|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 3467889999988754 4444 49999999997765332222222499999777777766433 2378
Q ss_pred EEEcCCCcEE--EEee--cCCC-eEEEEEcCCCCEEEEEcC---C-CeEEEEEccC
Q 010871 299 VFNFSTGRII--KKLV--VDSE-VTSMDHDHTGQLLFCGDA---Q-GCIYSISMES 345 (498)
Q Consensus 299 iwd~~~~~~~--~~~~--~~~~-i~~l~~~~~~~~l~~~~~---d-g~i~i~d~~~ 345 (498)
.|.+.+.... ..+. .... ...+..++++++|+.... + ..+++.++..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 8888766422 3332 2333 678889999998775432 2 3477777654
No 375
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.09 E-value=0.42 Score=48.63 Aligned_cols=144 Identities=19% Similarity=0.268 Sum_probs=87.2
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceeEEeec--CCC--CeEEEEEccCCCEEEEEe------CCCcEEEEECCCCcEEEEEe
Q 010871 201 DLLAYGASDGTLTVCTVSDPPKVIKLLNG--HSK--DVTDFDFSSNNQYIASSS------MDKTVRVWELTKGDCIRVIY 270 (498)
Q Consensus 201 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~--h~~--~V~~l~~s~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~ 270 (498)
..++.++.|+.|.-.|..+ ++.+..... +.. .+.+--.--++ .++.+. .+|.|..+|.++|+.+..+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~T-Gk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKT-GKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCC-CCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 4677788899999999988 666554432 111 12211111144 444443 26899999999999887754
Q ss_pred cCCC--------------------------------e-EEEEEEcCCCcEEEEEeC-----CC-----------cEEEEE
Q 010871 271 GVSS--------------------------------Q-LCIRFHPVNNNFLSVGNA-----NK-----------EITVFN 301 (498)
Q Consensus 271 ~~~~--------------------------------v-~~i~~~~~~~~~l~~g~~-----dg-----------~i~iwd 301 (498)
.... + ..+.+.+. ..+++.+.. ++ .|.-.|
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~-~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPE-TNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCC-CCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 3210 1 12345553 334444431 12 678889
Q ss_pred cCCCcEEEEeec---C-------CCeEEEEEcCCCC---EEEEEcCCCeEEEEEccCCc
Q 010871 302 FSTGRIIKKLVV---D-------SEVTSMDHDHTGQ---LLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 302 ~~~~~~~~~~~~---~-------~~i~~l~~~~~~~---~l~~~~~dg~i~i~d~~~~~ 347 (498)
+++|+....++. . ....-+.+..+|+ .++.+..+|.++++|-.+.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 999999988852 1 1222233334665 78899999999999876544
No 376
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.07 E-value=0.31 Score=46.76 Aligned_cols=204 Identities=9% Similarity=0.097 Sum_probs=94.8
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCC---CceeEEeec---CC----CCeEEEEEccCCCEEEEEe--CC----CcEEEEECC
Q 010871 199 SSDLLAYGA-SDGTLTVCTVSDP---PKVIKLLNG---HS----KDVTDFDFSSNNQYIASSS--MD----KTVRVWELT 261 (498)
Q Consensus 199 ~~~~lasg~-~dg~i~iwd~~~~---~~~~~~~~~---h~----~~V~~l~~s~~~~~l~s~s--~d----g~v~iwd~~ 261 (498)
..++|+..+ ..+.|.|.|+.+. .++.+++.. +. ..-..+..-|+|+.++|+- .+ |-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 455677666 6789999999853 234444442 11 1122334456888888752 22 457888888
Q ss_pred CCcEEEEEecCC----CeEEEEEEcCCCcEEEEEeC--------------------CCcEEEEEcCCCcEEEEeecC---
Q 010871 262 KGDCIRVIYGVS----SQLCIRFHPVNNNFLSVGNA--------------------NKEITVFNFSTGRIIKKLVVD--- 314 (498)
Q Consensus 262 ~~~~~~~~~~~~----~v~~i~~~~~~~~~l~~g~~--------------------dg~i~iwd~~~~~~~~~~~~~--- 314 (498)
+.+......... --..+-|.| ..+.+++... ..++.+||+.+.+.++++...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred cccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 777766665432 224677777 4566666532 458999999999999999654
Q ss_pred CCeEEEEEcCC--CCEE-EEEcCCCeEEEEEc-cCCcccccccccc--c------------ccCCCccceeeEEEeEeeE
Q 010871 315 SEVTSMDHDHT--GQLL-FCGDAQGCIYSISM-ESHSGALSRSHRH--R------------TTGKRKCPVTTVQYRSFSL 376 (498)
Q Consensus 315 ~~i~~l~~~~~--~~~l-~~~~~dg~i~i~d~-~~~~~~~~~~~~~--~------------~~~~~~~~i~~~~~~~~~~ 376 (498)
..+..+.|..+ ..+= +.+.-.+.|..|-- +...-........ . .+..-..-|+. +.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD-----I~i 319 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD-----ILI 319 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----------EEE
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe-----EEE
Confidence 34556776544 4433 33334555555533 2111100000000 0 00000122333 444
Q ss_pred cCCCcEEEEEE-cCCcEEEEEccccccceeeEe
Q 010871 377 LAGGPVLLTCT-QDGNLSFFSVALEIQGYLTFR 408 (498)
Q Consensus 377 s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~ 408 (498)
|.|.++|..+. .+|.|+.||+.......+...
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gq 352 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQ 352 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEE
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeE
Confidence 58999988776 589999999997666555443
No 377
>PHA02713 hypothetical protein; Provisional
Probab=97.06 E-value=0.09 Score=53.89 Aligned_cols=191 Identities=6% Similarity=0.077 Sum_probs=94.9
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCcEEEEE--ecCCCeEEEEEEcCCCcEEEEEeCCC-----cEEEEEcCCCcEE
Q 010871 242 NNQYIASSSMD------KTVRVWELTKGDCIRVI--YGVSSQLCIRFHPVNNNFLSVGNANK-----EITVFNFSTGRII 308 (498)
Q Consensus 242 ~~~~l~s~s~d------g~v~iwd~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~ 308 (498)
++...+.||.+ ..+..||..+......- .....-.+++.. ++.+.+.|+.++ .+..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56677777754 24677887766432111 111111223332 457777787654 4788998876533
Q ss_pred EE--eecCCCeEEEEEcCCCCEEEEEcCCC-----------------------eEEEEEccCCcccccccccccccCCCc
Q 010871 309 KK--LVVDSEVTSMDHDHTGQLLFCGDAQG-----------------------CIYSISMESHSGALSRSHRHRTTGKRK 363 (498)
Q Consensus 309 ~~--~~~~~~i~~l~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~ 363 (498)
.. +.....-.+++ .-++.+.+.|+.++ .+..||....+-....... ....
T Consensus 381 ~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~----~~r~ 455 (557)
T PHA02713 381 MLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW----TGTI 455 (557)
T ss_pred ECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC----cccc
Confidence 22 11111111222 22577777787653 3556665543322111110 0000
Q ss_pred cceeeEEEeEeeEcCCCcEEEEEEcCC------cEEEEEccc-cccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEE
Q 010871 364 CPVTTVQYRSFSLLAGGPVLLTCTQDG------NLSFFSVAL-EIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYI 436 (498)
Q Consensus 364 ~~i~~~~~~~~~~s~~~~~l~t~s~dg------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 436 (498)
. .++.. -++...+.|+.++ .+..||..+ .. +..............+.. -+|.+.
T Consensus 456 -~-~~~~~------~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-----W~~~~~m~~~r~~~~~~~------~~~~iy 516 (557)
T PHA02713 456 -R-PGVVS------HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-----WELITTTESRLSALHTIL------HDNTIM 516 (557)
T ss_pred -c-CcEEE------ECCEEEEEeCCCCCCccceeEEEecCCCCCC-----eeEccccCcccccceeEE------ECCEEE
Confidence 0 11111 3567777777542 356777764 21 111112222222221111 178999
Q ss_pred EEEeCCC--cEEEEECCCCCccce
Q 010871 437 VAGSEDS--NVYFYDLAKPKHSCV 458 (498)
Q Consensus 437 ~~gs~dg--~I~iwd~~~~~~~~~ 458 (498)
++|+.+| .+..||..+.++..+
T Consensus 517 v~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 517 MLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred EEeeecceeehhhcCcccccccch
Confidence 9999888 788899988765433
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.14 Score=49.58 Aligned_cols=138 Identities=13% Similarity=0.201 Sum_probs=93.8
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCC--E-----EEEEeCCCcEEEEECCCC-c-EEEEEecC
Q 010871 202 LLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQ--Y-----IASSSMDKTVRVWELTKG-D-CIRVIYGV 272 (498)
Q Consensus 202 ~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~--~-----l~s~s~dg~v~iwd~~~~-~-~~~~~~~~ 272 (498)
+|.++.....|+-.|++. ++.+....-|.. |.-+.+.|+.+ . -+.|-.|..|.-||.+-. . .+...+++
T Consensus 348 il~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 444555566677888887 888888887766 77788888653 2 234556778999998732 2 33333333
Q ss_pred -----CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe--ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 273 -----SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL--VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 273 -----~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
....|.+-. +..++++|+.+|.|++||- .+....+. ....+|..+..+.+|++|++.+ +..+.+.++..
T Consensus 426 qy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 426 QYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred ccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence 233455444 4568999999999999997 45444333 4778999999999999887655 55666666543
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.02 E-value=0.082 Score=54.16 Aligned_cols=149 Identities=9% Similarity=0.095 Sum_probs=86.1
Q ss_pred ccEEEEEEecCCCCEEEEEe------CCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCC---------
Q 010871 188 AAVTILKFGHMSSDLLAYGA------SDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD--------- 252 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~------~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d--------- 252 (498)
..+...+++| +|+.+|..- .|+.-.||-...++.......+. ..+.-.|+|+|+.|++.+..
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 3577889999 787776665 24444444433223333333333 37889999998888777532
Q ss_pred ---CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEE---EEcCCCcE-E---EEe--ecCCCeEEE
Q 010871 253 ---KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITV---FNFSTGRI-I---KKL--VVDSEVTSM 320 (498)
Q Consensus 253 ---g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~i---wd~~~~~~-~---~~~--~~~~~i~~l 320 (498)
+.+.+.++..+.... .....+..+.|+|++.+++++. +|.|.+ -....|.. + ..+ .....+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223223443333222 2234688999999887776665 477777 44444541 1 112 123346889
Q ss_pred EEcCCCCEEEEEcCCCe--EEEEEcc
Q 010871 321 DHDHTGQLLFCGDAQGC--IYSISME 344 (498)
Q Consensus 321 ~~~~~~~~l~~~~~dg~--i~i~d~~ 344 (498)
.|..++.++ ++..++. ++..+++
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLD 527 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecC
Confidence 999998855 5554444 4444444
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.97 E-value=0.0014 Score=56.21 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=69.4
Q ss_pred CCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccc
Q 010871 378 AGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSC 457 (498)
Q Consensus 378 ~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~ 457 (498)
.-+..+++|+.+|.|.+|....... ..- ........+.+.+ ....++.+..+++.||.|+.|++.-.+ .
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g~--~~d----~~~s~~e~i~~~I---p~~~~~~~~c~~~~dg~ir~~n~~p~k--~ 136 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEGA--HSD----RVCSGEESIDLGI---PNGRDSSLGCVGAQDGRIRACNIKPNK--V 136 (238)
T ss_pred ccCceEEeecccceEEEecCCccch--HHH----hhhcccccceecc---ccccccceeEEeccCCceeeeccccCc--e
Confidence 3467899999999999998762110 000 0001111111111 111356789999999999999998754 3
Q ss_pred eeeecCCC-CCeEEEEEcCCCCEEEEE--eCCCeEEEeecCC
Q 010871 458 VNKLQGHR-FPVVAVAWNHGENLLASS--DLYGIVIVWKRAK 496 (498)
Q Consensus 458 ~~~~~~h~-~~V~~l~~sp~~~~l~s~--~~Dg~i~iW~~~~ 496 (498)
+.....|. .++..+..+..+++|+.+ |.|..++.|+++.
T Consensus 137 ~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 137 LGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 44455566 566666667777888888 8888888888764
No 381
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.96 E-value=0.13 Score=46.07 Aligned_cols=110 Identities=14% Similarity=0.176 Sum_probs=80.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCC--cEEEEECCCCcEEEEEecCCCeE--EEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE
Q 010871 232 KDVTDFDFSSNNQYIASSSMDK--TVRVWELTKGDCIRVIYGVSSQL--CIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~--~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 307 (498)
.-...+.|..+|.++-+.+.-| .|+.+|+.+++............ .+... ++.+....-.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3356788877888888888776 69999999999888777665443 44554 446666667889999999999999
Q ss_pred EEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 308 IKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 308 ~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
+.++.....-+.++ .++..|+..+....|+++|...
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcc
Confidence 99998888888888 4677788888888999998654
No 382
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.96 E-value=0.44 Score=46.77 Aligned_cols=165 Identities=18% Similarity=0.198 Sum_probs=85.5
Q ss_pred cEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEec---CCCeEEE-----EEEc
Q 010871 211 TLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYG---VSSQLCI-----RFHP 282 (498)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~~~v~~i-----~~~~ 282 (498)
.|.||+.. +..+..+.--.+.|.++.|+.+. .|+....||.++++|+. |+....+.. ...+... .+..
T Consensus 62 ~I~iys~s--G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS--GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC--CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC
Confidence 48999886 45666555444899999998755 66677789999999986 333111111 1122211 2221
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCc-EEEEe-ecCC---------CeEE-EEEcCCCCEEEEEcCCCeEEEEEccCCcccc
Q 010871 283 VNNNFLSVGNANKEITVFNFSTGR-IIKKL-VVDS---------EVTS-MDHDHTGQLLFCGDAQGCIYSISMESHSGAL 350 (498)
Q Consensus 283 ~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~-~~~~---------~i~~-l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 350 (498)
++ +++. ..++.+.+..-.... ....+ .... .... ..++.+....+....++.+++.+-.....
T Consensus 138 -~G-ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 138 -NG-IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred -CC-EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--
Confidence 22 2222 344555444322211 11111 1000 1111 22344444444445555566443221100
Q ss_pred cccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 351 SRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 351 ~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
....+++.. +++||++++++.-..+|.+.+....
T Consensus 213 ---------i~~~~~i~~-----iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 213 ---------IDSDGPIIK-----IAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred ---------ccCCCCeEE-----EEECCCCCEEEEEECCCCEEEEECc
Confidence 011234444 4455999999999999999888755
No 383
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.90 E-value=0.3 Score=43.96 Aligned_cols=161 Identities=13% Similarity=0.212 Sum_probs=95.5
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecC-CCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGH-SKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
.+.+-...+..++|+|+++.++|+....+.|...+.. ++.++.+.-. .+..-.|++..++.++++.-.++.+.+.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 4455566799999999666788888888888777764 5666665432 356789999888877777666899999988
Q ss_pred CCCc------EEEEEe------cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC---CcEEEEe---e------cCCC
Q 010871 261 TKGD------CIRVIY------GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST---GRIIKKL---V------VDSE 316 (498)
Q Consensus 261 ~~~~------~~~~~~------~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~---~------~~~~ 316 (498)
.... ....+. +....-.++|.+.++.++++ -...-..+|.+.. ...+... . .-..
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 4321 112222 22357799999977666654 4555566666643 2222211 1 2346
Q ss_pred eEEEEEcCCCC-EEEEEcCCCeEEEEEccC
Q 010871 317 VTSMDHDHTGQ-LLFCGDAQGCIYSISMES 345 (498)
Q Consensus 317 i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~ 345 (498)
+.+++++|... +++....+..|..+|...
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G 202 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQG 202 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT-
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCC
Confidence 78999998754 667777788888887543
No 384
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.89 E-value=0.14 Score=52.60 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=85.3
Q ss_pred CCCCeEEEEEccCCCEEEEEe------CCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEe-----------
Q 010871 230 HSKDVTDFDFSSNNQYIASSS------MDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGN----------- 292 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~----------- 292 (498)
....+...+++|+|+.++..- .|+.-.||-...+.....+........-.|+|++..+.++..
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 334678899999999877655 244444443332222233333334667889887553333321
Q ss_pred CCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC-CcccccccccccccCCCccceeeEEE
Q 010871 293 ANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES-HSGALSRSHRHRTTGKRKCPVTTVQY 371 (498)
Q Consensus 293 ~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~ 371 (498)
..+.+.+.++..++... .....|..+.|+|||..++... +|.|++--+.. ..+.................+..+.|
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 12344444554444332 3456799999999999887765 47777733322 22221111110011122223455666
Q ss_pred eEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 372 RSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 372 ~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
. .++. |+++..++.-.+|.+.
T Consensus 505 ~-----~~~~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 505 R-----TGDS-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred e-----cCCE-EEEEecCCCCceEEEe
Confidence 4 6666 4566666655666654
No 385
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.38 Score=44.91 Aligned_cols=193 Identities=10% Similarity=0.100 Sum_probs=104.8
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-
Q 010871 194 KFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV- 272 (498)
Q Consensus 194 ~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~- 272 (498)
.|.+..+.++.+--..+.|.-|+..++.. ..+. +.+.+.++.....+..|+++.. -+.+++.+++..+..+...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 45563444666667788899998875222 2333 2333455555445556666543 3677887766553333211
Q ss_pred -----CCeEEEEEEcCCCcEEEEEeC-----------CCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcC-
Q 010871 273 -----SSQLCIRFHPVNNNFLSVGNA-----------NKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDA- 334 (498)
Q Consensus 273 -----~~v~~i~~~~~~~~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~- 334 (498)
.....+...|++. +.++... -|.|+.+|. .+..+..+. +-..-+.|+|+|+++.|+.+..
T Consensus 106 ~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 2344677777653 3333222 133444443 455555543 3456678999999987777655
Q ss_pred CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC-cEEEEEcc
Q 010871 335 QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG-NLSFFSVA 398 (498)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg-~i~iwd~~ 398 (498)
.+.|+.|+++...................+..-.+ +...+|.+.+++...| .|.+|+..
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~-----~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM-----AVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCce-----EEeCCCCEEEecccCCceEEEECCC
Confidence 47899888874222211110000011122222222 2337777776555554 88888876
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.0057 Score=63.63 Aligned_cols=108 Identities=14% Similarity=0.223 Sum_probs=77.8
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
.+.+.+. -+..+|.|+..|.|-..|+...-.....-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++.++.
T Consensus 91 ~v~s~a~---~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 91 GVISSAI---VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred ceeeeee---eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 3444444 3467899999999999888753222222223468999999999999999999999999999999999888
Q ss_pred EecCC----CeEEEEEEcCCCcEEEEEeCCCcEEEEEc
Q 010871 269 IYGVS----SQLCIRFHPVNNNFLSVGNANKEITVFNF 302 (498)
Q Consensus 269 ~~~~~----~v~~i~~~~~~~~~l~~g~~dg~i~iwd~ 302 (498)
+..++ .+..+.+..+ ...++++...|. +|.+
T Consensus 168 i~e~~ap~t~vi~v~~t~~-nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTSQ-NSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeecCCccceEEEEEEeCC-CcEEEEccCCCc--eEEE
Confidence 87653 3445555553 346777766665 5554
No 387
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.76 E-value=0.49 Score=50.07 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=69.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCC--------eEEEEEcc----------------CCCEEEEEeCCCcE
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKD--------VTDFDFSS----------------NNQYIASSSMDKTV 255 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~--------V~~l~~s~----------------~~~~l~s~s~dg~v 255 (498)
+..|..++.++.|.-.|..+ ++.+..+...... ...+.+.. .+..|+.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa~T-Gk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAAT-GKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCC-CcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 34666677778888888877 5555554422110 11222221 23478888999999
Q ss_pred EEEECCCCcEEEEEecCCCeE-------------EEEEEcC-CCcEEEEEeC----------CCcEEEEEcCCCcEEEEe
Q 010871 256 RVWELTKGDCIRVIYGVSSQL-------------CIRFHPV-NNNFLSVGNA----------NKEITVFNFSTGRIIKKL 311 (498)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~v~-------------~i~~~~~-~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~ 311 (498)
.-.|.++|+.+..+.....+. ...-.|. .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999988765432221 0000010 1235555642 688999999999999888
Q ss_pred e
Q 010871 312 V 312 (498)
Q Consensus 312 ~ 312 (498)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 5
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.62 E-value=0.86 Score=45.24 Aligned_cols=145 Identities=15% Similarity=0.155 Sum_probs=86.0
Q ss_pred ccEEEEEEecCCCC-EEEEEe--CCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCC----CEEEEEeCCCcEEEEEC
Q 010871 188 AAVTILKFGHMSSD-LLAYGA--SDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN----QYIASSSMDKTVRVWEL 260 (498)
Q Consensus 188 ~~V~~v~~sp~~~~-~lasg~--~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~----~~l~s~s~dg~v~iwd~ 260 (498)
.+|..++|. ||+ .+.|.- .+|.++.=| ...+.. -..|..+.|.|-+ ..|++......|.||.+
T Consensus 20 HPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd----s~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 20 HPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD----SKVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred ccccceEec--CCCEEEEEeeeeeCCccccCC----ccEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 378899997 455 444432 233333221 223333 3468999999853 35556667788999987
Q ss_pred C-----CCcEEEEEe----cCCCe--EEEEEEcCCCcEEEEEeCCCcEEEEEcCC--CcEEEEeecCCCeEEEEEcCCCC
Q 010871 261 T-----KGDCIRVIY----GVSSQ--LCIRFHPVNNNFLSVGNANKEITVFNFST--GRIIKKLVVDSEVTSMDHDHTGQ 327 (498)
Q Consensus 261 ~-----~~~~~~~~~----~~~~v--~~i~~~~~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~~~~~~i~~l~~~~~~~ 327 (498)
. .++.+..-. ..-++ ..+.|+|.. .+|++-.....-.+++++. .+....+...+.|.|.+|.+||+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence 6 223322221 12222 378999954 5555554444434555543 34444557788999999999999
Q ss_pred EEEEEcCC-CeEEEEEc
Q 010871 328 LLFCGDAQ-GCIYSISM 343 (498)
Q Consensus 328 ~l~~~~~d-g~i~i~d~ 343 (498)
.|+++-.. =.-++||-
T Consensus 169 RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEEEeCCeEEEEEecC
Confidence 87766433 34667764
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.53 E-value=0.32 Score=47.23 Aligned_cols=105 Identities=13% Similarity=0.201 Sum_probs=63.2
Q ss_pred EEEEccCCCEEEEEeCCCcEEE---EECC-----CCcEEEEEe----cC--CCeEEEEEEcC----------CCcEEEEE
Q 010871 236 DFDFSSNNQYIASSSMDKTVRV---WELT-----KGDCIRVIY----GV--SSQLCIRFHPV----------NNNFLSVG 291 (498)
Q Consensus 236 ~l~~s~~~~~l~s~s~dg~v~i---wd~~-----~~~~~~~~~----~~--~~v~~i~~~~~----------~~~~l~~g 291 (498)
.++.+|++..|+.+..+..+.+ |+.. .+....... .. ..|.++.+.|- +-..+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4677888988888877766555 5431 112222221 11 24555555442 34789999
Q ss_pred eCCCcEEEEEcCCCcEEE-EeecCCCeEEEEEcCCC---------CEEEEEcCCCeEEEEE
Q 010871 292 NANKEITVFNFSTGRIIK-KLVVDSEVTSMDHDHTG---------QLLFCGDAQGCIYSIS 342 (498)
Q Consensus 292 ~~dg~i~iwd~~~~~~~~-~~~~~~~i~~l~~~~~~---------~~l~~~~~dg~i~i~d 342 (498)
..+|.|++|.. +|..+. ..-|..+|..+.+.... ..|.+-.. +.|.+.|
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Id 144 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIID 144 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEe
Confidence 99999999997 454433 33578888888874321 44555444 5555555
No 390
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.72 Score=43.08 Aligned_cols=222 Identities=12% Similarity=0.061 Sum_probs=114.1
Q ss_pred EEccCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee----
Q 010871 238 DFSSNNQ-YIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV---- 312 (498)
Q Consensus 238 ~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---- 312 (498)
.|.++.. ++++--..+.|.-|+..+++. ..+.....+.++.....+ ..|+++ +..+.+++.+++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~-g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAG-GRLIAC--EHGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCC-CeEEEE--ccccEEEeccCCceeEEeccccC
Confidence 4556555 444555667788888776643 344444444444444433 344444 2346677776666533331
Q ss_pred --cCCCeEEEEEcCCCCEEEEEcC-----------CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCC
Q 010871 313 --VDSEVTSMDHDHTGQLLFCGDA-----------QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG 379 (498)
Q Consensus 313 --~~~~i~~l~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~ 379 (498)
.....+.+.+.|+|.+.+.... .|.|+.++.......+. ..+-..- ..+++||+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~--------~~~~~~~-----NGla~SpD 173 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL--------DDDLTIP-----NGLAFSPD 173 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee--------cCcEEec-----CceEECCC
Confidence 2355678888999886664433 12344333211110000 1111112 24556699
Q ss_pred CcEEEEEEcC-CcEEEEEccc--cccceeeEeEeec-cCCceeeeEEEEeeeeeccCCCEEEEEeCCC-cEEEEECCCCC
Q 010871 380 GPVLLTCTQD-GNLSFFSVAL--EIQGYLTFRCSLK-LAPRVHSIRASFCPLLSLEKGEYIVAGSEDS-NVYFYDLAKPK 454 (498)
Q Consensus 380 ~~~l~t~s~d-g~i~iwd~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg-~I~iwd~~~~~ 454 (498)
++.|+.+... +.|.-|++.. ............. ..+.... ++...+|.+.+++..+| .|.+|+.. ++
T Consensus 174 g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG-------~~vDadG~lw~~a~~~g~~v~~~~pd-G~ 245 (307)
T COG3386 174 GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG-------MAVDADGNLWVAAVWGGGRVVRFNPD-GK 245 (307)
T ss_pred CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc-------eEEeCCCCEEEecccCCceEEEECCC-Cc
Confidence 9877776654 7788887752 1000000000000 0111111 11223777776555554 89999998 44
Q ss_pred ccceeeecCCCCCeEEEEEc-CCCCEEE-EEeCC
Q 010871 455 HSCVNKLQGHRFPVVAVAWN-HGENLLA-SSDLY 486 (498)
Q Consensus 455 ~~~~~~~~~h~~~V~~l~~s-p~~~~l~-s~~~D 486 (498)
.+..+.-....+++++|- |+.+.|+ |+...
T Consensus 246 --l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 246 --LLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred --EEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 456666555788899996 4455444 44333
No 391
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.59 Score=41.94 Aligned_cols=136 Identities=14% Similarity=0.242 Sum_probs=86.5
Q ss_pred EEEEEecCCCCEEEEEeCCCc-EEEEEcCCCCceeE-------EeecCCCCeEEEEEccCCCEEEEEeCC-----CcEEE
Q 010871 191 TILKFGHMSSDLLAYGASDGT-LTVCTVSDPPKVIK-------LLNGHSKDVTDFDFSSNNQYIASSSMD-----KTVRV 257 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~~dg~-i~iwd~~~~~~~~~-------~~~~h~~~V~~l~~s~~~~~l~s~s~d-----g~v~i 257 (498)
..|+|+|....-++.+-.-|+ ..++|.....+++. -|.+| =.|+|||.+|...-.| |.|-|
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEEeecCCCCCCCceEEE
Confidence 357888866677777777665 45788876333222 23344 3699999999876443 77999
Q ss_pred EECCCC-cEEEEEecCC-CeEEEEEEcCCCcEEEEEe------C-----------CCcEEEEEcCCCcEEEEee-----c
Q 010871 258 WELTKG-DCIRVIYGVS-SQLCIRFHPVNNNFLSVGN------A-----------NKEITVFNFSTGRIIKKLV-----V 313 (498)
Q Consensus 258 wd~~~~-~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~------~-----------dg~i~iwd~~~~~~~~~~~-----~ 313 (498)
||...+ +.+..+..++ ....+.+.+++..++++.+ . .-.+.+.|..+|+.+.+.. +
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~ 224 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR 224 (366)
T ss_pred EecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence 998854 4555666664 5667888887654444432 0 1234555666676665543 3
Q ss_pred CCCeEEEEEcCCCCEEEEE
Q 010871 314 DSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 314 ~~~i~~l~~~~~~~~l~~~ 332 (498)
.-.|..++..++|..++.+
T Consensus 225 ~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred hcceeeeeeCCCCcEEEEE
Confidence 4567888888887765544
No 392
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.50 E-value=0.29 Score=47.61 Aligned_cols=162 Identities=12% Similarity=0.087 Sum_probs=96.9
Q ss_pred CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccc--
Q 010871 326 GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQG-- 403 (498)
Q Consensus 326 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~-- 403 (498)
...|++|+..|.+++|+........... .....-..||..+..-.|....+...|++ =.-..+.+|.+......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~l---llE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDL---LLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccE---EEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 4589999999999999874332221111 11134456888887766533233334444 66778899988532211
Q ss_pred ---eeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEE
Q 010871 404 ---YLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLL 480 (498)
Q Consensus 404 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 480 (498)
...+.....+.-.......++.|..-...-.+|.+-+.||.+.+|+-+.-. ....+.+ ---.-.+++.+....|
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~-~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPD-FLLPGPLCYCPRTDSF 189 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCC-CCCCcCeEEeecCCEE
Confidence 223333333333344444444444333345789999999999999987622 2233332 2223446778878888
Q ss_pred EEEeCCCeEEEeec
Q 010871 481 ASSDLYGIVIVWKR 494 (498)
Q Consensus 481 ~s~~~Dg~i~iW~~ 494 (498)
++++.+..|.-|+.
T Consensus 190 vt~sss~~l~~Yky 203 (418)
T PF14727_consen 190 VTASSSWTLECYKY 203 (418)
T ss_pred EEecCceeEEEecH
Confidence 88988888887764
No 393
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.49 E-value=0.0065 Score=52.16 Aligned_cols=140 Identities=12% Similarity=0.070 Sum_probs=83.5
Q ss_pred EEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE--EEEecCCCeEEEEE
Q 010871 203 LAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI--RVIYGVSSQLCIRF 280 (498)
Q Consensus 203 lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~v~~i~~ 280 (498)
|..-+.||.|+-+++.......+.-.-|...- ....-+..++.|+.+|.|.+|+....-.. +.......+.++.-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 33445677777777654211122211222221 11123457889999999999987722111 11112234444444
Q ss_pred EcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cC-CCeEEEEEcCCCCEEEEE--cCCCeEEEEEccC
Q 010871 281 HPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VD-SEVTSMDHDHTGQLLFCG--DAQGCIYSISMES 345 (498)
Q Consensus 281 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~-~~i~~l~~~~~~~~l~~~--~~dg~i~i~d~~~ 345 (498)
.-+...+..+++.+|.|+.|++.-++.+.... |. .++..+.....++.++.+ +.+..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 44455699999999999999999888887764 44 455555555566666666 6677777777653
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.14 Score=53.94 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=71.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcE--EEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCC--
Q 010871 242 NNQYIASSSMDKTVRVWELTKGDC--IRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSE-- 316 (498)
Q Consensus 242 ~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~-- 316 (498)
.+..++.|+..|.|-..|+...-. .+-.....+|.+++|+. ++.+++.|-.+|.|.+||+..++.++.+. +..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 355788888888888888765422 22223446889999988 56889999999999999999999888883 4333
Q ss_pred -eEEEEEcCCCCEEEEEcCCCeEE
Q 010871 317 -VTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 317 -i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
|..+.+..++..+++++..|.++
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gsf~ 200 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGSFW 200 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCceE
Confidence 44444555666888998888743
No 395
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.34 E-value=1.4 Score=46.77 Aligned_cols=107 Identities=8% Similarity=0.106 Sum_probs=69.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCe---------EEEEEEcC---------------CCcEEEEEeCCCcEE
Q 010871 243 NQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQ---------LCIRFHPV---------------NNNFLSVGNANKEIT 298 (498)
Q Consensus 243 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v---------~~i~~~~~---------------~~~~l~~g~~dg~i~ 298 (498)
+..|+.++.++.|.-.|..+|+.+..+...... ..+.+... ....++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 447777888888999999999988887654321 12333221 234677888999999
Q ss_pred EEEcCCCcEEEEeecCCCeE-------------EEEEcC--CCCEEEEEcC----------CCeEEEEEccCCccc
Q 010871 299 VFNFSTGRIIKKLVVDSEVT-------------SMDHDH--TGQLLFCGDA----------QGCIYSISMESHSGA 349 (498)
Q Consensus 299 iwd~~~~~~~~~~~~~~~i~-------------~l~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~ 349 (498)
-.|.++|+.+..+.....|. .+.-.| .+..+++|+. +|.|+-+|..+.+..
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999999998875443331 011111 1345666642 688999988765543
No 396
>PHA03098 kelch-like protein; Provisional
Probab=96.32 E-value=0.29 Score=50.25 Aligned_cols=188 Identities=13% Similarity=0.061 Sum_probs=90.1
Q ss_pred CCcEEEEEeCCC------cEEEEEcCCCcEEEEeec--CCCeEEEEEcCCCCEEEEEcCCC-----eEEEEEccCCcccc
Q 010871 284 NNNFLSVGNANK------EITVFNFSTGRIIKKLVV--DSEVTSMDHDHTGQLLFCGDAQG-----CIYSISMESHSGAL 350 (498)
Q Consensus 284 ~~~~l~~g~~dg------~i~iwd~~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~ 350 (498)
++.+++.|+.++ .+..||..+.+....-.. ...-.+++ .-++.+++.|+.++ .+..||....+-..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 445666666432 577888877665322211 11111222 23567777887653 46667665433221
Q ss_pred cccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC------CcEEEEEccccccceeeEeEeeccCCceeeeEEEE
Q 010871 351 SRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD------GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASF 424 (498)
Q Consensus 351 ~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (498)
....+ ..... .++.. -++..++.|+.+ ..+..||..+.. +..............+.
T Consensus 373 ~~~lp----~~r~~--~~~~~------~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-----W~~~~~~p~~r~~~~~~- 434 (534)
T PHA03098 373 EPPLI----FPRYN--PCVVN------VNNLIYVIGGISKNDELLKTVECFSLNTNK-----WSKGSPLPISHYGGCAI- 434 (534)
T ss_pred CCCcC----cCCcc--ceEEE------ECCEEEEECCcCCCCcccceEEEEeCCCCe-----eeecCCCCccccCceEE-
Confidence 11110 00000 01111 356777777632 357788876431 11111111111111111
Q ss_pred eeeeeccCCCEEEEEeCCC--------cEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEE
Q 010871 425 CPLLSLEKGEYIVAGSEDS--------NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY-----GIVIV 491 (498)
Q Consensus 425 ~~~~~~~~~~~l~~gs~dg--------~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-----g~i~i 491 (498)
. -++.+++.|+.++ .+.+||..+.+...+..+.........+.+ ++.+++.||.+ ..|.+
T Consensus 435 ~-----~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~ 507 (534)
T PHA03098 435 Y-----HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEV 507 (534)
T ss_pred E-----ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEE
Confidence 1 1667777776432 388999988765444333222222222233 57777777754 46788
Q ss_pred eecCCC
Q 010871 492 WKRAKT 497 (498)
Q Consensus 492 W~~~~~ 497 (498)
||.++.
T Consensus 508 yd~~~~ 513 (534)
T PHA03098 508 YDDKTN 513 (534)
T ss_pred EeCCCC
Confidence 887653
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.27 E-value=0.014 Score=37.08 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=29.9
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcE
Q 010871 231 SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDC 265 (498)
Q Consensus 231 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 265 (498)
...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4543
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.19 E-value=0.019 Score=36.39 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 465 RFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 465 ~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
...|..++|+|...+||.+..||.|.++.++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45699999999999999999999999999853
No 399
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.10 E-value=1.4 Score=42.18 Aligned_cols=194 Identities=14% Similarity=0.211 Sum_probs=111.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEc----cCCCE--EEEEe-CC---CcEEEEECCCC-cEEE
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFS----SNNQY--IASSS-MD---KTVRVWELTKG-DCIR 267 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s----~~~~~--l~s~s-~d---g~v~iwd~~~~-~~~~ 267 (498)
...+|+....++-+.+||+. ++.+..+. .+.+..+..- -+|+. |+.++ .+ .+|++|.+... ..+.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~--Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD--GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT--S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred ccceEEEEeCCCCEEEEcCC--CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 55688888888899999998 45666654 2334444332 13432 44443 32 46999977631 2333
Q ss_pred EEec--------CCCeEEEEE--EcC-CCcEEEEEeCCCcEEEEEcC---CC----cEEEEeecCCCeEEEEEcCCCCEE
Q 010871 268 VIYG--------VSSQLCIRF--HPV-NNNFLSVGNANKEITVFNFS---TG----RIIKKLVVDSEVTSMDHDHTGQLL 329 (498)
Q Consensus 268 ~~~~--------~~~v~~i~~--~~~-~~~~l~~g~~dg~i~iwd~~---~~----~~~~~~~~~~~i~~l~~~~~~~~l 329 (498)
.+.. ...+..+|+ ++. +..++++...+|.+..|.+. .+ +.++.+.....+..|..+.....|
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3321 123555555 333 44577788899998888764 23 467888888899999999999999
Q ss_pred EEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC-cEEEEEE-cCCcEEEEEccc
Q 010871 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG-PVLLTCT-QDGNLSFFSVAL 399 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~-~~l~t~s-~dg~i~iwd~~~ 399 (498)
+.+-++.-|+-|+.+.....................|..+.+..- .++ .+|++++ .+++..+|+...
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~---~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG---SDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE----CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEec---CCCCeEEEEEcCCCCeEEEEecCC
Confidence 999999989888876544322111111111223455666655321 233 4555555 467899999874
No 400
>PHA03098 kelch-like protein; Provisional
Probab=95.99 E-value=0.42 Score=49.04 Aligned_cols=201 Identities=10% Similarity=0.075 Sum_probs=94.3
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEEecC--CCeEEEEEEcCCCcEEEEEeCC-----CcEEEEEcCCCcEE
Q 010871 242 NNQYIASSSMDK------TVRVWELTKGDCIRVIYGV--SSQLCIRFHPVNNNFLSVGNAN-----KEITVFNFSTGRII 308 (498)
Q Consensus 242 ~~~~l~s~s~dg------~v~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~ 308 (498)
++..++.|+.++ .+..||..+.+....-... ..-.+++.. ++.+++.|+.+ ..+..||..+++-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666666543 4677887776543221111 111122222 45677777765 34778888766533
Q ss_pred EEe--ecCCCeEEEEEcCCCCEEEEEcCC------CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC
Q 010871 309 KKL--VVDSEVTSMDHDHTGQLLFCGDAQ------GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG 380 (498)
Q Consensus 309 ~~~--~~~~~i~~l~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~ 380 (498)
..- .....-.+++. -++.+++.|+.+ ..+..||....+-......+ ..... .++.. .++
T Consensus 372 ~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p----~~r~~--~~~~~------~~~ 438 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP----ISHYG--GCAIY------HDG 438 (534)
T ss_pred eCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC----ccccC--ceEEE------ECC
Confidence 221 11211122222 356677777632 35778877543322111110 00000 01111 356
Q ss_pred cEEEEEEcCC--------cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC-----CcEEE
Q 010871 381 PVLLTCTQDG--------NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED-----SNVYF 447 (498)
Q Consensus 381 ~~l~t~s~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----g~I~i 447 (498)
..++.|+.++ .+.+||..+..- ..............+ . . -++.+++.|+.+ ..|.+
T Consensus 439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-----~~~~~~~~~r~~~~~--~--~--~~~~iyv~GG~~~~~~~~~v~~ 507 (534)
T PHA03098 439 KIYVIGGISYIDNIKVYNIVESYNPVTNKW-----TELSSLNFPRINASL--C--I--FNNKIYVVGGDKYEYYINEIEV 507 (534)
T ss_pred EEEEECCccCCCCCcccceEEEecCCCCce-----eeCCCCCcccccceE--E--E--ECCEEEEEcCCcCCcccceeEE
Confidence 6666666432 377788765421 111111111111111 1 1 167777777764 47899
Q ss_pred EECCCCCccceeeecCCCCCe
Q 010871 448 YDLAKPKHSCVNKLQGHRFPV 468 (498)
Q Consensus 448 wd~~~~~~~~~~~~~~h~~~V 468 (498)
||..+.....+..+....+.|
T Consensus 508 yd~~~~~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 508 YDDKTNTWTLFCKFPKVIGSL 528 (534)
T ss_pred EeCCCCEEEecCCCcccccce
Confidence 998886654444443333333
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.93 E-value=1 Score=39.26 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=37.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEc-CCCCEEE
Q 010871 432 KGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWN-HGENLLA 481 (498)
Q Consensus 432 ~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~l~ 481 (498)
+|.+.++.-..++|..+|..+++ .+.++.-....|++++|- ++-..|+
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK--~L~eiklPt~qitsccFgGkn~d~~y 270 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGK--ILLEIKLPTPQITSCCFGGKNLDILY 270 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCc--EEEEEEcCCCceEEEEecCCCccEEE
Confidence 78888888889999999999976 466666668889999997 3333443
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.88 E-value=0.043 Score=33.68 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=28.1
Q ss_pred ccEEEEEEecCCC--CEEEEEeCCCcEEEEEcCC
Q 010871 188 AAVTILKFGHMSS--DLLAYGASDGTLTVCTVSD 219 (498)
Q Consensus 188 ~~V~~v~~sp~~~--~~lasg~~dg~i~iwd~~~ 219 (498)
++|.+++|+|..+ ++|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4789999998666 7999999999999999985
No 403
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=0.84 Score=41.02 Aligned_cols=184 Identities=11% Similarity=0.083 Sum_probs=102.4
Q ss_pred EEecCCCCEEEEEeCC-----CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE----------
Q 010871 194 KFGHMSSDLLAYGASD-----GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW---------- 258 (498)
Q Consensus 194 ~~sp~~~~~lasg~~d-----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw---------- 258 (498)
.||| +|.+|...-.| |.|-|||.......+..+..|.-.-..+.|.+||+.|+.+. |-|...
T Consensus 120 vfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNL 196 (366)
T ss_pred ccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccch
Confidence 5888 89988876544 78999999876677788888988889999999999888763 333333
Q ss_pred ----------ECCCCcEEEEEecC-----CCeEEEEEEcCCCcEEEEEeCCCc-----EEEEEcCCCcEEEEee------
Q 010871 259 ----------ELTKGDCIRVIYGV-----SSQLCIRFHPVNNNFLSVGNANKE-----ITVFNFSTGRIIKKLV------ 312 (498)
Q Consensus 259 ----------d~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~l~~g~~dg~-----i~iwd~~~~~~~~~~~------ 312 (498)
|..+|..+.+.... -++..+..-++ +.+++.+...|. -.+=-...++.+.-+.
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d-gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD-GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCC-CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence 33333333222111 12333444332 222222222111 1111122333333332
Q ss_pred --cCCCeEEEEEcCCCCEEEEEcCC-CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC
Q 010871 313 --VDSEVTSMDHDHTGQLLFCGDAQ-GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD 389 (498)
Q Consensus 313 --~~~~i~~l~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d 389 (498)
....|-+++.+.+..+++..+-. +...+||..+.......... ....+. +...-+++.+.+
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~---------daaGva-------~~~~gf~vssg~ 339 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP---------DAAGVA-------AAKGGFAVSSGQ 339 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc---------ccccce-------eccCceEEecCC
Confidence 23567788888766666655544 46778987654322211110 011111 345557777788
Q ss_pred CcEEEEEc
Q 010871 390 GNLSFFSV 397 (498)
Q Consensus 390 g~i~iwd~ 397 (498)
|.+.++.-
T Consensus 340 G~~~~~s~ 347 (366)
T COG3490 340 GRIIFYSR 347 (366)
T ss_pred ceEEeccc
Confidence 88888753
No 404
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.73 E-value=1.6 Score=45.81 Aligned_cols=85 Identities=18% Similarity=0.279 Sum_probs=53.8
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCC---cccc-----ccc---cc---ccccCCCccceeeEEEeEeeEcCCC
Q 010871 315 SEVTSMDHDHTGQLLFCGDAQGCIYSISMESH---SGAL-----SRS---HR---HRTTGKRKCPVTTVQYRSFSLLAGG 380 (498)
Q Consensus 315 ~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~-----~~~---~~---~~~~~~~~~~i~~~~~~~~~~s~~~ 380 (498)
..|..+.++++|.+++..+..|.+.+ .+... .+.+ ... .. ..........|..+.|++.+ .++
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s--~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS--ESD 161 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC--CCC
Confidence 46889999999999999888775444 33221 1100 000 00 00012334567777777543 557
Q ss_pred cEEEEEEcCCcEEEEEcccccc
Q 010871 381 PVLLTCTQDGNLSFFSVALEIQ 402 (498)
Q Consensus 381 ~~l~t~s~dg~i~iwd~~~~~~ 402 (498)
..|++-+.|+.+++||+.....
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCC
Confidence 8999999999999999975443
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=0.17 Score=53.52 Aligned_cols=137 Identities=14% Similarity=0.050 Sum_probs=87.9
Q ss_pred CCeEEEEEccCCCEEE--EEeCCCcEEEEECCCCcEE-----EEEec-------CCCeEEEEEEcCCCcEEEEEeCCCcE
Q 010871 232 KDVTDFDFSSNNQYIA--SSSMDKTVRVWELTKGDCI-----RVIYG-------VSSQLCIRFHPVNNNFLSVGNANKEI 297 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~--s~s~dg~v~iwd~~~~~~~-----~~~~~-------~~~v~~i~~~~~~~~~l~~g~~dg~i 297 (498)
-+|..+...+|++..+ ..+.+-.|..+|+++-..- .-+.. ..-+.++.|.|.=....++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3455666667765443 3444457888998754221 11111 12345888988766667777889999
Q ss_pred EEEEcCCC-cEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEe
Q 010871 298 TVFNFSTG-RIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYR 372 (498)
Q Consensus 298 ~iwd~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 372 (498)
++..+... ..+..+......++++|+|.|..+++|...|.+.-|.........+...+ ......|.++.|.
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp----~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP----VEENYRVLSVTWL 252 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCC----cCCCcceeEEEEe
Confidence 98876543 23344567778999999999999999999999998865433222222221 1125678888875
No 406
>PHA02790 Kelch-like protein; Provisional
Probab=95.56 E-value=0.78 Score=46.26 Aligned_cols=185 Identities=10% Similarity=0.046 Sum_probs=90.6
Q ss_pred CCcEEEEEeCCC-----cEEEEEcCCCcEEEEee--cCCCeEEEEEcCCCCEEEEEcCCC--eEEEEEccCCcccccccc
Q 010871 284 NNNFLSVGNANK-----EITVFNFSTGRIIKKLV--VDSEVTSMDHDHTGQLLFCGDAQG--CIYSISMESHSGALSRSH 354 (498)
Q Consensus 284 ~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~ 354 (498)
++.++++|+.++ .+..||..+++....-. ....-.+++ .-++.+.++|+.++ .+..||....+ .....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~--W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAA--WVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCe--EEECC
Confidence 445667776543 46778887765433222 111111222 23567777777543 46667654322 11111
Q ss_pred cccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC---cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeecc
Q 010871 355 RHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG---NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLE 431 (498)
Q Consensus 355 ~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (498)
.. .........+. -+|+..+.|+.++ .+..||..+. .+..............+. . -
T Consensus 348 ~l---~~~r~~~~~~~-------~~g~IYviGG~~~~~~~ve~ydp~~~-----~W~~~~~m~~~r~~~~~~-~-----~ 406 (480)
T PHA02790 348 SL---LKPRCNPAVAS-------INNVIYVIGGHSETDTTTEYLLPNHD-----QWQFGPSTYYPHYKSCAL-V-----F 406 (480)
T ss_pred CC---CCCCcccEEEE-------ECCEEEEecCcCCCCccEEEEeCCCC-----EEEeCCCCCCccccceEE-E-----E
Confidence 10 00000111111 3577777777654 3667776543 111111111111111111 1 1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEeecCCC
Q 010871 432 KGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY-----GIVIVWKRAKT 497 (498)
Q Consensus 432 ~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-----g~i~iW~~~~~ 497 (498)
+|.+.+.|+ .+.+||..+.+...+..+.........+.+ ++++.+.||.+ ..|..||.++.
T Consensus 407 ~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 407 GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 677777774 578899988776555544432333333333 57788888764 35778887654
No 407
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.48 E-value=4.1 Score=42.97 Aligned_cols=71 Identities=20% Similarity=0.326 Sum_probs=46.6
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCC----------CcE---EEEEe---------cCCCeEEEEEEcCC--CcE
Q 010871 232 KDVTDFDFSSNNQYIASSSMDKTVRVWELTK----------GDC---IRVIY---------GVSSQLCIRFHPVN--NNF 287 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~----------~~~---~~~~~---------~~~~v~~i~~~~~~--~~~ 287 (498)
-.|..|.++++|++|+..|..| |.|-.+.. |+. .+++. ....+..+.|+|.+ +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688899999999999888866 44444421 111 11111 11246688888863 467
Q ss_pred EEEEeCCCcEEEEEcC
Q 010871 288 LSVGNANKEITVFNFS 303 (498)
Q Consensus 288 l~~g~~dg~i~iwd~~ 303 (498)
|++-..|+++++||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 7777788888888884
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=1.9 Score=39.09 Aligned_cols=174 Identities=13% Similarity=0.152 Sum_probs=103.9
Q ss_pred CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec--CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccc
Q 010871 273 SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV--DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGAL 350 (498)
Q Consensus 273 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 350 (498)
..+.++.|+|+...++++. ....-.|+=...|+.+.++.. -.....+.+..+|++.++--.++.++++.++..+...
T Consensus 86 ~nvS~LTynp~~rtLFav~-n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVT-NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeCCCcceEEEec-CCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 4578999999765555544 556666666678999998853 3456678888888888888889999999887665443
Q ss_pred cccc---cccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeee
Q 010871 351 SRSH---RHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPL 427 (498)
Q Consensus 351 ~~~~---~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (498)
.... ..............++ +++....|+.+-.-.-+.||.+........ ..............-...+.+
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA-----~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~-~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLA-----WDPVDHRLFVAKERNPIGIFEVTQSPSSLS-VHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred eccceEEeccccCCCCcCceeee-----cCCCCceEEEEEccCCcEEEEEecCCcccc-cccccCcccccceEeeccccc
Confidence 3221 1111112233344444 448999999998888888888764321111 111111111100001122222
Q ss_pred eec-cCCCEEEEEeCCCcEEEEECCCC
Q 010871 428 LSL-EKGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 428 ~~~-~~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
.+. ..+.+++-+.+++.+.-.|....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCC
Confidence 222 36777888888888888887753
No 409
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.28 E-value=4.9 Score=42.63 Aligned_cols=231 Identities=13% Similarity=0.166 Sum_probs=121.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEec---CCCeEEEEEEcC--CCc---EEEEEeCCCcEEEEEcC
Q 010871 232 KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYG---VSSQLCIRFHPV--NNN---FLSVGNANKEITVFNFS 303 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~~~v~~i~~~~~--~~~---~l~~g~~dg~i~iwd~~ 303 (498)
+.++....+.+...++.++.++.+...++..+. ++.... ...+.|+.++|. +.+ ++++|.++..+.+.-..
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 445555555566677777777777777776555 333332 247889988875 444 88999888776655432
Q ss_pred -CCcEEEEee-----cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEc
Q 010871 304 -TGRIIKKLV-----VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLL 377 (498)
Q Consensus 304 -~~~~~~~~~-----~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s 377 (498)
....+.... -+..|.-.++-.+..+|.++..||.+..|.++..++........ .-...|+.--.|+
T Consensus 567 pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~---~lGt~P~~Lr~f~----- 638 (1096)
T KOG1897|consen 567 PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV---TLGTQPISLRTFS----- 638 (1096)
T ss_pred CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccc---ccCCCCcEEEEEe-----
Confidence 333333221 23456666666678899999999999999888777665432211 1122333333333
Q ss_pred CCCcEEEEEEcCCcEEEEEccccccceeeE-eEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCcc
Q 010871 378 AGGPVLLTCTQDGNLSFFSVALEIQGYLTF-RCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHS 456 (498)
Q Consensus 378 ~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~ 456 (498)
..++.-+-+..|.-..+|..+.. +.+ ....+... ..+|.....-+..++.+. .+.+.+.-+..-...
T Consensus 639 sk~~t~vfa~sdrP~viY~~n~k----Lv~spls~kev~-------~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl 706 (1096)
T KOG1897|consen 639 SKSRTAVFALSDRPTVIYSSNGK----LVYSPLSLKEVN-------HMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKL 706 (1096)
T ss_pred eCCceEEEEeCCCCEEEEecCCc----EEEeccchHHhh-------hhcccccccCCceEEEec-CCceEEEEecchhhc
Confidence 33333333444555555543311 110 00000000 111111111234455544 355777776653333
Q ss_pred ceeeecCCCCCeEEEEEcCCCCEEEEEe
Q 010871 457 CVNKLQGHRFPVVAVAWNHGENLLASSD 484 (498)
Q Consensus 457 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~ 484 (498)
.++++.- ......+++.+....+++.+
T Consensus 707 ~irtvpl-~~~prrI~~q~~sl~~~v~s 733 (1096)
T KOG1897|consen 707 HIRTVPL-GESPRRICYQESSLTFGVLS 733 (1096)
T ss_pred ceeeecC-CCChhheEecccceEEEEEe
Confidence 3444433 34566777776444444443
No 410
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.20 E-value=1.1 Score=46.43 Aligned_cols=114 Identities=20% Similarity=0.263 Sum_probs=65.5
Q ss_pred CCCcEEEEEEcCCcEEEEEcccccc----c---------eeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCc
Q 010871 378 AGGPVLLTCTQDGNLSFFSVALEIQ----G---------YLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSN 444 (498)
Q Consensus 378 ~~~~~l~t~s~dg~i~iwd~~~~~~----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~ 444 (498)
-+...|+.|..||.|.+|.+..-.. . .......+...-...+...++.. ....++||+++....
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~---~~~~rlIAVSsNs~~ 188 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHD---YKKSRLIAVSSNSQE 188 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEe---cCcceEEEEecCCce
Confidence 5677899999999999998753110 0 00000011111111111112220 036788888888888
Q ss_pred EEEEECCCCC-ccceeeecCCCCCeEEEEEcCCC---C---EEEEEeCCCeEEEeec
Q 010871 445 VYFYDLAKPK-HSCVNKLQGHRFPVVAVAWNHGE---N---LLASSDLYGIVIVWKR 494 (498)
Q Consensus 445 I~iwd~~~~~-~~~~~~~~~h~~~V~~l~~sp~~---~---~l~s~~~Dg~i~iW~~ 494 (498)
|.||-..... ......-..|...|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 189 VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 189 VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8887665421 11111111256678899997643 2 7888999999999887
No 411
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.16 E-value=2.4 Score=38.52 Aligned_cols=152 Identities=15% Similarity=0.156 Sum_probs=85.7
Q ss_pred CeEEEEEccCCCEEEEEe-CCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEE-cCCCcEEE-
Q 010871 233 DVTDFDFSSNNQYIASSS-MDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFN-FSTGRIIK- 309 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd-~~~~~~~~- 309 (498)
.+.+.+++++++.++... .++.-.+|-...+.....+........-.|.++ +.+.++...+...+++. ...++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCC-CCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688999999998877665 233334444444433333323346677788886 45665555566666663 33333222
Q ss_pred Eee---cCCCeEEEEEcCCCCEEEEEc---CCCeEEEEEccCCccc--ccccccccccCCCccceeeEEEeEeeEcCCCc
Q 010871 310 KLV---VDSEVTSMDHDHTGQLLFCGD---AQGCIYSISMESHSGA--LSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGP 381 (498)
Q Consensus 310 ~~~---~~~~i~~l~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~ 381 (498)
... ....|..+.++|+|..++... .++.|++--+...... ................+..+.|. .++.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~-----~~~~ 178 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS-----DDST 178 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec-----CCCE
Confidence 121 222899999999999777655 3577777655433222 11111111112234566677775 6776
Q ss_pred EEEEEEcCC
Q 010871 382 VLLTCTQDG 390 (498)
Q Consensus 382 ~l~t~s~dg 390 (498)
+++.+...+
T Consensus 179 L~V~~~~~~ 187 (253)
T PF10647_consen 179 LVVLGRSAG 187 (253)
T ss_pred EEEEeCCCC
Confidence 666555443
No 412
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=2.4 Score=38.42 Aligned_cols=163 Identities=13% Similarity=0.157 Sum_probs=91.1
Q ss_pred EeecCC-CCeEEEEEccCCCEEEEEeCCCcEEEEECC---CCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEE
Q 010871 226 LLNGHS-KDVTDFDFSSNNQYIASSSMDKTVRVWELT---KGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFN 301 (498)
Q Consensus 226 ~~~~h~-~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~---~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd 301 (498)
.+.+|- ..|..+.....-.++..|-.--.+-+|+.. ....+..+....-+..+.++ +.++..+..+.-++|.|
T Consensus 36 ~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvD 112 (370)
T COG5276 36 AYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVS---EEYVYVADWSSGLRIVD 112 (370)
T ss_pred EEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEec---ccEEEEEcCCCceEEEe
Confidence 344555 445555544332222222111123345544 12344445555555667775 35777777888899999
Q ss_pred cCCCcEEEEe---ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC
Q 010871 302 FSTGRIIKKL---VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA 378 (498)
Q Consensus 302 ~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~ 378 (498)
+.+...-..+ .....-.++. -.|++..++..+.-+.++|+...+.......- ......-..+. -
T Consensus 113 IS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~lagry----a~~~~d~~~v~-------I 179 (370)
T COG5276 113 ISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQLAGRY----ALPGGDTHDVA-------I 179 (370)
T ss_pred ccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCceeeeee----ccCCCCceeEE-------E
Confidence 9876544333 2223334444 45788888886666778888765543322110 11111112233 2
Q ss_pred CCcEEEEEEcCCcEEEEEccccccce
Q 010871 379 GGPVLLTCTQDGNLSFFSVALEIQGY 404 (498)
Q Consensus 379 ~~~~l~t~s~dg~i~iwd~~~~~~~~ 404 (498)
.|++-..+..|+-+.+.|+.......
T Consensus 180 SGn~AYvA~~d~GL~ivDVSnp~sPv 205 (370)
T COG5276 180 SGNYAYVAWRDGGLTIVDVSNPHSPV 205 (370)
T ss_pred ecCeEEEEEeCCCeEEEEccCCCCCe
Confidence 48888889999999999998765443
No 413
>PLN02153 epithiospecifier protein
Probab=95.00 E-value=3.5 Score=39.46 Aligned_cols=56 Identities=14% Similarity=-0.017 Sum_probs=29.3
Q ss_pred CCCEEEEEeCC--------------CcEEEEECCCCCccceeeec---CCCCC--eEEEEEcCCCCEEEEEeCCC
Q 010871 432 KGEYIVAGSED--------------SNVYFYDLAKPKHSCVNKLQ---GHRFP--VVAVAWNHGENLLASSDLYG 487 (498)
Q Consensus 432 ~~~~l~~gs~d--------------g~I~iwd~~~~~~~~~~~~~---~h~~~--V~~l~~sp~~~~l~s~~~Dg 487 (498)
++.+++.|+.. ..|+.||+.+.....+.... ..... ..++...-++.+++.||.++
T Consensus 251 ~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~ 325 (341)
T PLN02153 251 GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLP 325 (341)
T ss_pred CCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCC
Confidence 57777777752 26888998876543332110 01111 12333344456777777643
No 414
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=2.1 Score=36.72 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=65.0
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeE
Q 010871 242 NNQYIASSSMD--KTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVT 318 (498)
Q Consensus 242 ~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~ 318 (498)
+|.++.+.+.- ..|++||+.+|+.+....-.. .+..=-....+..+....-.+|....+|..+.+++..+..++.-+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 45566666553 369999999999887765442 222111111133444445578899999999999999888888878
Q ss_pred EEEEcCCCCEEEEEcCCCeEEEEEc
Q 010871 319 SMDHDHTGQLLFCGDAQGCIYSISM 343 (498)
Q Consensus 319 ~l~~~~~~~~l~~~~~dg~i~i~d~ 343 (498)
.++. ++..|+.++....++.-|.
T Consensus 135 gLt~--d~~~LimsdGsatL~frdP 157 (262)
T COG3823 135 GLTS--DDKNLIMSDGSATLQFRDP 157 (262)
T ss_pred eeec--CCcceEeeCCceEEEecCH
Confidence 8775 4445666665666665543
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.85 E-value=0.88 Score=45.15 Aligned_cols=128 Identities=10% Similarity=0.150 Sum_probs=78.6
Q ss_pred CCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccc--cc--eeeEeEeeccCCceeeeEEEEeeeeeccCCCEE
Q 010871 361 KRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEI--QG--YLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYI 436 (498)
Q Consensus 361 ~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 436 (498)
+.-..|..+.|.+... .+-..|++......|.+|-+.... .. .....+.....-.+-.-.+.|+| ....|
T Consensus 54 GqFEhV~GlsW~P~~~-~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-----k~~iL 127 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCT-ADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-----KKAIL 127 (671)
T ss_pred eccceeeeeeecCccc-CCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-----CCceE
Confidence 3344577888875432 234466667778899999986322 11 22223333333444445567777 77777
Q ss_pred EEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEeecC
Q 010871 437 VAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSD-LYGIVIVWKRA 495 (498)
Q Consensus 437 ~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~i~iW~~~ 495 (498)
++-.....-.++++..........++ ..+-|.|.+|.+||+.|+.+- ..=.-+|||-.
T Consensus 128 ~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 128 TVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 77666665567777654443344443 467899999999999877653 33345688743
No 416
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.84 E-value=1.4 Score=34.90 Aligned_cols=108 Identities=10% Similarity=0.068 Sum_probs=72.6
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCC--------CcEEEEEecCCCeEEEEEEcC----CCcEEEEEeCCCcEEEEEcC
Q 010871 236 DFDFSSNNQYIASSSMDKTVRVWELTK--------GDCIRVIYGVSSQLCIRFHPV----NNNFLSVGNANKEITVFNFS 303 (498)
Q Consensus 236 ~l~~s~~~~~l~s~s~dg~v~iwd~~~--------~~~~~~~~~~~~v~~i~~~~~----~~~~l~~g~~dg~i~iwd~~ 303 (498)
.-.|......|+.++.-|+|.|++... ...++.+.-...+.+++-.+- +...|+.| ....|..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcc
Confidence 345655566788888889999998663 345677777777877765552 35567777 45689999999
Q ss_pred CCcEEEEeecCCCeEEEEEcCC---CCEEEEEcCCCeEEEEEcc
Q 010871 304 TGRIIKKLVVDSEVTSMDHDHT---GQLLFCGDAQGCIYSISME 344 (498)
Q Consensus 304 ~~~~~~~~~~~~~i~~l~~~~~---~~~l~~~~~dg~i~i~d~~ 344 (498)
...-+.....+..+.++.+-.- ..-++..+.+..|.-||..
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 8877766666777888776322 2334444446666666653
No 417
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.52 E-value=2.9 Score=36.27 Aligned_cols=103 Identities=18% Similarity=0.274 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEEcCC-CCceeEEeecCCCCeEEEEEccCCCEEEEEeCC------CcEEEE---ECC--CCcEEE-
Q 010871 201 DLLAYGASDGTLTVCTVSD-PPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD------KTVRVW---ELT--KGDCIR- 267 (498)
Q Consensus 201 ~~lasg~~dg~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d------g~v~iw---d~~--~~~~~~- 267 (498)
+.|..+...+.|.+|++.. ..+....|.. -+.|..+.++..|++|+|-=.+ ..+|+| +.. ..+.++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 5555546677899999983 2345555653 4889999999999999996332 256664 222 111111
Q ss_pred ----------------------EEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc
Q 010871 268 ----------------------VIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR 306 (498)
Q Consensus 268 ----------------------~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 306 (498)
.+.....+.+++..|..+++++.. ++.+.+|.+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQT 166 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEE
Confidence 122234566888888777777643 5688898875443
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.47 E-value=1.4 Score=45.19 Aligned_cols=104 Identities=16% Similarity=0.320 Sum_probs=66.3
Q ss_pred CcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC-------C
Q 010871 380 GPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA-------K 452 (498)
Q Consensus 380 ~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~-------~ 452 (498)
++..++-+....+.|||.+.+. ......+.....+..+.....| +|+.+++.+....|.+|.-. .
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~---lE~~~~f~~~~~I~dLDWtst~-----d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGV---LEYEESFSEDDPIRDLDWTSTP-----DGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcE---EEEeeeecCCCceeeceeeecC-----CCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 4444444455679999998653 3333333335566666544444 99999999999999998642 1
Q ss_pred CCccceeee--cCCC-CCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 453 PKHSCVNKL--QGHR-FPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 453 ~~~~~~~~~--~~h~-~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
+...++..+ ..|+ .+|.+..|.++|.+++.+| +.+.|++
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 122333333 3344 5799999999998776554 4677765
No 419
>PRK10115 protease 2; Provisional
Probab=94.43 E-value=8 Score=40.97 Aligned_cols=113 Identities=11% Similarity=0.049 Sum_probs=67.9
Q ss_pred CCeEEEEEccCCCEEEEEeC-C----CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCC-----CcEEEEE
Q 010871 232 KDVTDFDFSSNNQYIASSSM-D----KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNAN-----KEITVFN 301 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~-d----g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d-----g~i~iwd 301 (498)
-.+..+.|+|++++|+-+.. + ..|++-|+.+|..+...-.... ..++|.+++..++++...+ ..|+.++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 34667889999998775532 2 3588899988864322211112 4589999877777765433 3688888
Q ss_pred cCCC--cEEEEeec-CCCeE-EEEEcCCCCEEEEEcC---CCeEEEEEccC
Q 010871 302 FSTG--RIIKKLVV-DSEVT-SMDHDHTGQLLFCGDA---QGCIYSISMES 345 (498)
Q Consensus 302 ~~~~--~~~~~~~~-~~~i~-~l~~~~~~~~l~~~~~---dg~i~i~d~~~ 345 (498)
+.++ +-...+.. ..... .+..+.++++++..+. ++.+.+++.+.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 8887 33333332 22222 3344557776654433 34688887543
No 420
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.39 E-value=2.3 Score=40.92 Aligned_cols=165 Identities=21% Similarity=0.221 Sum_probs=93.9
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCcccee-eEEEeEeeEcCCCcEEEEEEcCCcEE
Q 010871 315 SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVT-TVQYRSFSLLAGGPVLLTCTQDGNLS 393 (498)
Q Consensus 315 ~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~s~~~~~l~t~s~dg~i~ 393 (498)
..+..+-..|+|+.+.+-+. ..+.++++....-........ ........|+ .+. +...|.-+++++.||.|.
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~d-spg~~~~~Vte~l~-----lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDD-SPGDSRHQVTEQLY-----LLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhc-CCCchHHHHHHHHH-----HHhCceeEEEEcCCCcee
Confidence 45667778999998877665 678888886554332211110 0011111222 111 115677889999999987
Q ss_pred EE-EccccccceeeEeEeeccCC-ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEE
Q 010871 394 FF-SVALEIQGYLTFRCSLKLAP-RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAV 471 (498)
Q Consensus 394 iw-d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l 471 (498)
-| |++.............++.+ .+.. +.-..+.+-+++-+.+|++.++.....+. + -++.--..+.-+
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~-------l~pe~~rkgF~~l~~~G~L~~f~st~~~~--l-L~~~~~~~~~~~ 363 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQF-------LLPETNRKGFYSLYRNGTLQSFYSTSEKL--L-LFERAYQAPQLV 363 (733)
T ss_pred eeeeeecCCCCcceeeeccccCccccee-------eccccccceEEEEcCCCceeeeecccCcc--e-ehhhhhcCccee
Confidence 76 55544333322222222221 1111 11112445677778889998887765432 1 122222356778
Q ss_pred EEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 472 AWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 472 ~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
++||.+.+|++-. .|.++++.++..
T Consensus 364 ~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 364 AMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred eeCcccchheeec-CCceEEEEecCC
Confidence 9999999998664 588999988764
No 421
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.21 E-value=4.8 Score=37.52 Aligned_cols=150 Identities=11% Similarity=0.127 Sum_probs=77.3
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-CC
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT-KG 263 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~-~~ 263 (498)
+-.+.+..+..++ ++.+++++.......-||.-...- ...-..-...|..|.|.|++.+.+. ...|.|+.=+.. ..
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDG 218 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCc
Confidence 3356788888888 999999887766666787643111 1122235688999999999866554 488888877722 22
Q ss_pred cEEEE--Eec---CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee----cCCCeEEEEEcCCCCEEEEEcC
Q 010871 264 DCIRV--IYG---VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV----VDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 264 ~~~~~--~~~---~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
..... ... .-.+..++|.++ ..+.++| ..|.+ +.....|+.-.+.. ....+..+.|....+-++. +.
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~-~~~wa~g-g~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~ 294 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPP-NEIWAVG-GSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQ 294 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSS-S-EEEEE-STT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred cccccccCCcccCceeeEEEEecCC-CCEEEEe-CCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CC
Confidence 21111 111 124678999884 4555555 45543 44455565544442 3456888888766555555 45
Q ss_pred CCeEEEE
Q 010871 335 QGCIYSI 341 (498)
Q Consensus 335 dg~i~i~ 341 (498)
+|.|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 7776654
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.05 E-value=3 Score=40.38 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=77.7
Q ss_pred cEEEEEEecCCCCEEEEEe-----------CCC-cEEEEEcCCC-Cc--eeEEeecCCCCeEEEEEccCCCEEEEEeCCC
Q 010871 189 AVTILKFGHMSSDLLAYGA-----------SDG-TLTVCTVSDP-PK--VIKLLNGHSKDVTDFDFSSNNQYIASSSMDK 253 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~-----------~dg-~i~iwd~~~~-~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg 253 (498)
....|+|.+ +|+++++-. ..+ .|.+++-.+. +. ....+.........|++.+++ +++ ++...
T Consensus 15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 456789988 788776642 223 6777764321 22 234444444556889999888 444 44444
Q ss_pred cEEEEECCCC-----c--EEEE-Eec-----CCCeEEEEEEcCCCcEEEEEeC------------------CCcEEEEEc
Q 010871 254 TVRVWELTKG-----D--CIRV-IYG-----VSSQLCIRFHPVNNNFLSVGNA------------------NKEITVFNF 302 (498)
Q Consensus 254 ~v~iwd~~~~-----~--~~~~-~~~-----~~~v~~i~~~~~~~~~l~~g~~------------------dg~i~iwd~ 302 (498)
..++.|.... + .+.. +.. +.....+.|.|++.-++..|+. .|.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454321 1 1111 211 2335678999976544444421 144555666
Q ss_pred CCCcEEEEeecCCCeEEEEEcCCCCEEEEEc
Q 010871 303 STGRIIKKLVVDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 303 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 333 (498)
.+++.......-.....++|+++|+++++-.
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 5544322222334567899999988876644
No 423
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.03 E-value=0.83 Score=47.18 Aligned_cols=111 Identities=10% Similarity=0.138 Sum_probs=77.6
Q ss_pred CCcEEEEEeCCCcEEEEEcCC-------C-------------cEEEEeecCCCeEEEEEc--CCCCEEEEEcCCCeEEEE
Q 010871 284 NNNFLSVGNANKEITVFNFST-------G-------------RIIKKLVVDSEVTSMDHD--HTGQLLFCGDAQGCIYSI 341 (498)
Q Consensus 284 ~~~~l~~g~~dg~i~iwd~~~-------~-------------~~~~~~~~~~~i~~l~~~--~~~~~l~~~~~dg~i~i~ 341 (498)
+..+|+++.+||.|.+|.+++ . ++...+.....+++++++ ...++||+++....|.+|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 457888899999999996531 0 012233456789999998 888899999999999888
Q ss_pred EccCCcccccccccccccCCCccceeeEEEeEeeEcCCCc-EEEEEEcCCcEEEEEcc
Q 010871 342 SMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGP-VLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~-~l~t~s~dg~i~iwd~~ 398 (498)
-............ ...+...|.+|.|..-...+.|. .|++++-.|.+.+|++.
T Consensus 193 af~l~~~r~~~~~----s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 193 AFALVDERFYHVP----SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEecccccccccc----ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 7655322211111 12356678888887655545554 78889999999998883
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.90 E-value=3.2 Score=40.24 Aligned_cols=41 Identities=5% Similarity=-0.061 Sum_probs=23.8
Q ss_pred CcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 010871 443 SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486 (498)
Q Consensus 443 g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D 486 (498)
|.|.-++...++. ..+...-.....++|+++|.++++-..+
T Consensus 164 g~i~r~~pdg~~~---e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 164 GGLFRYNPDGGKL---RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ceEEEEecCCCeE---EEEecCcCCCccceECCCCCEEEEccCC
Confidence 4456666655432 2222222345789999999887765433
No 425
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.89 E-value=6.3 Score=37.80 Aligned_cols=204 Identities=13% Similarity=0.171 Sum_probs=104.6
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEc----CCCCE--EEEEc-CC---CeEEEEEccCCccccccc
Q 010871 284 NNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHD----HTGQL--LFCGD-AQ---GCIYSISMESHSGALSRS 353 (498)
Q Consensus 284 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~----~~~~~--l~~~~-~d---g~i~i~d~~~~~~~~~~~ 353 (498)
...+++....++-+.+||+. |+.+..+.. ..++.+.+- -.|+. |++++ .+ ..|++|.++...+.+...
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 34677777888999999995 666666642 334443331 13332 44443 32 469999887654433221
Q ss_pred ccc-cccCCCccceeeEEEeEeeEcC-CC-cEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeec
Q 010871 354 HRH-RTTGKRKCPVTTVQYRSFSLLA-GG-PVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSL 430 (498)
Q Consensus 354 ~~~-~~~~~~~~~i~~~~~~~~~~s~-~~-~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (498)
... .........+..+++. -++ +| -++++...+|.+..|.+.....+.........+.... .... +...
T Consensus 145 ~~~~~p~~~~~~e~yGlcly---~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-Q~EG----CVVD 216 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLY---RSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-QPEG----CVVD 216 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEE---E-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--EEE----EEEE
T ss_pred CCCCcccccccccceeeEEe---ecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-cceE----EEEe
Confidence 100 0001111224444432 123 34 3667788899999998875444433322222221111 1111 1122
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCC---ccceeeecC--CCCCeEEEEEc--CCC--CEEEEEeCCCeEEEeecCCC
Q 010871 431 EKGEYIVAGSEDSNVYFYDLAKPK---HSCVNKLQG--HRFPVVAVAWN--HGE--NLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 431 ~~~~~l~~gs~dg~I~iwd~~~~~---~~~~~~~~~--h~~~V~~l~~s--p~~--~~l~s~~~Dg~i~iW~~~~~ 497 (498)
....+|+.|-++.-|.-|+..... ...+....+ ....|-.|++- .++ -+|+|.-.+++..||+.+..
T Consensus 217 De~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 217 DETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 356688899999888888876322 222322322 34567788774 333 35566667889999998753
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=93.73 E-value=4.2 Score=41.06 Aligned_cols=139 Identities=9% Similarity=0.004 Sum_probs=67.2
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCCceeE--EeecCCCCeEEEEEccCCCEEEEEeCC--CcEEEEECCCCcEEEEE
Q 010871 199 SSDLLAYGASDG-----TLTVCTVSDPPKVIK--LLNGHSKDVTDFDFSSNNQYIASSSMD--KTVRVWELTKGDCIRVI 269 (498)
Q Consensus 199 ~~~~lasg~~dg-----~i~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~ 269 (498)
++.+++.||.++ .+..||..+ ..-.. .+...... .+++ .-++...+.|+.+ ..+..||..+++-...-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~-~~W~~~~~m~~~r~~-~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYIS-NNWIPIPPMNSPRLY-ASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCC-CEEEECCCCCchhhc-ceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 566778887653 466677765 22111 11111111 1222 2356666777754 35778887665432221
Q ss_pred ecCCCe--EEEEEEcCCCcEEEEEeCCC---cEEEEEcCCCcEEEEee--cCCCeEEEEEcCCCCEEEEEcCCCeEEEEE
Q 010871 270 YGVSSQ--LCIRFHPVNNNFLSVGNANK---EITVFNFSTGRIIKKLV--VDSEVTSMDHDHTGQLLFCGDAQGCIYSIS 342 (498)
Q Consensus 270 ~~~~~v--~~i~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d 342 (498)
.-.... .+++.. ++.+.+.|+.++ .+..||.++.+-...-. ....-.+++ .-++.+.+.|+ .+.+||
T Consensus 348 ~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~GG---~~e~yd 421 (480)
T PHA02790 348 SLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVGR---NAEFYC 421 (480)
T ss_pred CCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEECC---ceEEec
Confidence 111111 122222 456777777553 46788887665433221 111111222 23456666663 466777
Q ss_pred ccCC
Q 010871 343 MESH 346 (498)
Q Consensus 343 ~~~~ 346 (498)
....
T Consensus 422 p~~~ 425 (480)
T PHA02790 422 ESSN 425 (480)
T ss_pred CCCC
Confidence 6543
No 427
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.69 E-value=6.8 Score=37.51 Aligned_cols=223 Identities=12% Similarity=0.126 Sum_probs=92.4
Q ss_pred EEccCCCEEEE-EeCCC--cEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec
Q 010871 238 DFSSNNQYIAS-SSMDK--TVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV 313 (498)
Q Consensus 238 ~~s~~~~~l~s-~s~dg--~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 313 (498)
+|.++|+.|+. +..|| .+.+.|+.+++..+.-.+.. .......++++..++.. .....|+-.|+++.+....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv-~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYV-KNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEE-ETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEE-ECCCeEEEEECCcCcEEEEEEC
Confidence 56778865554 44455 46677888888776665542 23345666766444443 3556899999999876655543
Q ss_pred CCC-eEEEEE--cCCCCEEEEEcC---C-------------------CeEEEEEccCCcccccccccccccCCCccceee
Q 010871 314 DSE-VTSMDH--DHTGQLLFCGDA---Q-------------------GCIYSISMESHSGALSRSHRHRTTGKRKCPVTT 368 (498)
Q Consensus 314 ~~~-i~~l~~--~~~~~~l~~~~~---d-------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 368 (498)
+.. +-...| +.++..++-.-. + ..|...|+.+ +..... ......+.-
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t--G~~~~v------~~~~~wlgH 192 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT--GERKVV------FEDTDWLGH 192 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEE------EEESS-EEE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC--CceeEE------EecCccccC
Confidence 333 323444 334444332210 0 1111122211 111100 011112233
Q ss_pred EEEeEeeEcCCCcEEEEEEcCC-----cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEe---
Q 010871 369 VQYRSFSLLAGGPVLLTCTQDG-----NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGS--- 440 (498)
Q Consensus 369 ~~~~~~~~s~~~~~l~t~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs--- 440 (498)
+.++ |....+++-+.+| .-|||-++.......... .........+ --|.+ ||..|.--+
T Consensus 193 ~~fs-----P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~--~~~~~e~~gH-Efw~~-----DG~~i~y~~~~~ 259 (386)
T PF14583_consen 193 VQFS-----PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH--RRMEGESVGH-EFWVP-----DGSTIWYDSYTP 259 (386)
T ss_dssp EEEE-----TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEE-EEE-T-----TSS-EEEEEEET
T ss_pred cccC-----CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee--cCCCCccccc-ccccC-----CCCEEEEEeecC
Confidence 3333 7666666655444 237787765433222211 1111111111 13444 888765432
Q ss_pred --CCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 010871 441 --EDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486 (498)
Q Consensus 441 --~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D 486 (498)
.+..|.-+|+.+++...+... .....+--++||.+++-=|.|
T Consensus 260 ~~~~~~i~~~d~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 260 GGQDFWIAGYDPDTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCceEEEeeCCCCCCceEEEeC----CceeeeEEcCCCCEEEecCCC
Confidence 244677788888654333222 234455667899888754444
No 428
>PLN02193 nitrile-specifier protein
Probab=93.48 E-value=9.4 Score=38.44 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=49.4
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCcEEEEEecC--C-C----eEEEEEEcCCCcEEEEEeCC-----CcEEEEEc
Q 010871 242 NNQYIASSSMD-------KTVRVWELTKGDCIRVIYGV--S-S----QLCIRFHPVNNNFLSVGNAN-----KEITVFNF 302 (498)
Q Consensus 242 ~~~~l~s~s~d-------g~v~iwd~~~~~~~~~~~~~--~-~----v~~i~~~~~~~~~l~~g~~d-----g~i~iwd~ 302 (498)
++..++.|+.+ ..+.+||+.+.+-.. +... . . -.+++.. ++.+.+.|+.+ ..+.+||+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~ 251 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDT 251 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEEC
Confidence 34555666643 246678877654332 1111 1 1 1112222 45677777654 35888998
Q ss_pred CCCcEEEEeec-----CCCeEEEEEcCCCCEEEEEcCCC-----eEEEEEccCC
Q 010871 303 STGRIIKKLVV-----DSEVTSMDHDHTGQLLFCGDAQG-----CIYSISMESH 346 (498)
Q Consensus 303 ~~~~~~~~~~~-----~~~i~~l~~~~~~~~l~~~~~dg-----~i~i~d~~~~ 346 (498)
.+.+-...... ...-.+++. -++++++.|+.++ .+..||+...
T Consensus 252 ~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 252 TTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 87654332111 111122222 3456677776543 3566766543
No 429
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=6.1 Score=35.96 Aligned_cols=276 Identities=11% Similarity=0.099 Sum_probs=148.5
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHS-KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD- 264 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~- 264 (498)
.+-+..+.++ ++++..+..+.-++|.|+.++..+...-.-.. +--.++.. .|++...+..|.-+.+.|+.+.+
T Consensus 86 ~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 4456677785 46777777777899999998544433211122 33344444 47788888866668888987553
Q ss_pred --EEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc---EEEEeecCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 265 --CIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR---IIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 265 --~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~---~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
........+ ....++.+ +++...+..|+-+.+.|+.... .+........+.++..+++..+++..++ -+
T Consensus 161 P~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gv 235 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GV 235 (370)
T ss_pred ceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ce
Confidence 222222222 22344443 4567777789999999987643 3444445557888888877655555432 34
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCcee
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVH 418 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
.+.|....+....... -....+.++. .+. -.+++......+.-+.+.|+......++...+.... ....
T Consensus 236 livd~s~~ssp~~~gs------yet~~p~~~s--~v~--Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g-~~a~ 304 (370)
T COG5276 236 LIVDVSGPSSPTVFGS------YETSNPVSIS--TVP--VSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAG-YQAA 304 (370)
T ss_pred EEEecCCCCCceEeec------cccCCccccc--cee--cccceeeeeccccCceeEeccCCCCCchhccccCCC-cccc
Confidence 5555544332222111 0111111111 111 346777777777778888877554333322221111 0111
Q ss_pred eeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 419 SIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.+.+ .+.++..+..+ +..+-+....+. .....+-...+.+.+.+-+.+.+.+...+|.+.||+.-
T Consensus 305 gi~a---------y~~y~yiadkn-~g~vV~~s~~s~--m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 305 GIRA---------YGNYNYIADKN-TGAVVDASPPSM--MDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred ceEE---------ecCeeEeccCC-ceEEEeCCChhh--cccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 2211 35555555444 445555554321 11122222223333344445688889999999999863
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.24 E-value=0.17 Score=52.22 Aligned_cols=170 Identities=15% Similarity=0.216 Sum_probs=96.5
Q ss_pred cCCCeEEEEEcCCC-CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCc
Q 010871 313 VDSEVTSMDHDHTG-QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGN 391 (498)
Q Consensus 313 ~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~ 391 (498)
..+.+-.+.|-... ..+. ..-|.+.+|+++.-.+.+..............++.-+.|+++. ++.-++..+-.++.
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~--~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIA--VNKVYICYGLKGGE 206 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccc--cccceeeeccCCCc
Confidence 34555555553221 1111 3346788999988777766555554445555666777787777 55678888888999
Q ss_pred EEEEEccccccceeeEeEeec-------cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC-C--Cccceeee
Q 010871 392 LSFFSVALEIQGYLTFRCSLK-------LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK-P--KHSCVNKL 461 (498)
Q Consensus 392 i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~-~--~~~~~~~~ 461 (498)
|++..........+ +.... +...+..+ ...+ +||..||....||.+++|.+.- + ...|+...
T Consensus 207 i~lL~~~ra~~~l~--rsHs~~~~d~a~~~~g~~~l-~~lS-----pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhew 278 (1283)
T KOG1916|consen 207 IRLLNINRALRSLF--RSHSQRVTDMAFFAEGVLKL-ASLS-----PDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEW 278 (1283)
T ss_pred eeEeeechHHHHHH--HhcCCCcccHHHHhhchhhh-eeeC-----CCCcEEEEeecCCccceeeeeeeccccHhhhhcc
Confidence 98876654322110 00000 00111111 1234 4999999999999988887642 1 13466667
Q ss_pred cCCCC-CeEEEEEcCCC---------CEEEEEe-CCCeEEEeec
Q 010871 462 QGHRF-PVVAVAWNHGE---------NLLASSD-LYGIVIVWKR 494 (498)
Q Consensus 462 ~~h~~-~V~~l~~sp~~---------~~l~s~~-~Dg~i~iW~~ 494 (498)
+.|.+ +-.|.-|+.+. .++++++ ....+++|.-
T Consensus 279 kphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 279 KPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred CCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 77763 33333243321 2445544 3456888864
No 431
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.15 E-value=3.6 Score=32.70 Aligned_cols=114 Identities=14% Similarity=0.186 Sum_probs=69.9
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEcCCCC-------ceeEEeecCCCCeEEEEEcc-----CCCEEEEEeCCCcEEEEEC
Q 010871 193 LKFGHMSSDLLAYGASDGTLTVCTVSDPP-------KVIKLLNGHSKDVTDFDFSS-----NNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 193 v~~sp~~~~~lasg~~dg~i~iwd~~~~~-------~~~~~~~~h~~~V~~l~~s~-----~~~~l~s~s~dg~v~iwd~ 260 (498)
-+|.. ....|++++.-|.|.|++..... ..++.|. -...|++|+-.+ +...|+.|+. ..+..||+
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 34544 44578888888999999876421 2233333 456677776543 2356777765 46999999
Q ss_pred CCCcEEEEEecCCCeEEEEEEcC---CCcEEEEEeCCCcEEEEEcCCCcEEEE
Q 010871 261 TKGDCIRVIYGVSSQLCIRFHPV---NNNFLSVGNANKEITVFNFSTGRIIKK 310 (498)
Q Consensus 261 ~~~~~~~~~~~~~~v~~i~~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~ 310 (498)
....-+..-..+..+.++.+-.- ...++++| .+..|.-||....+..+.
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence 98876655555566666655322 23455555 456677777655444433
No 432
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.92 E-value=6.1 Score=38.77 Aligned_cols=142 Identities=12% Similarity=0.139 Sum_probs=85.4
Q ss_pred CCCEE-EEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCC--------CEEEEEeCCCcEEEEECC-CCcEEEE
Q 010871 199 SSDLL-AYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN--------QYIASSSMDKTVRVWELT-KGDCIRV 268 (498)
Q Consensus 199 ~~~~l-asg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~--------~~l~s~s~dg~v~iwd~~-~~~~~~~ 268 (498)
+..+| ..|+....++-.|+.. ++.+....-|... -+.|.|+. +.|+-.|..+ |--.|.+ .|..+..
T Consensus 478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc-eEEecccccCCceee
Confidence 44443 3455556677777776 7788887777664 56777743 3455444444 4333433 3433333
Q ss_pred EecCC-----CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEE
Q 010871 269 IYGVS-----SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSIS 342 (498)
Q Consensus 269 ~~~~~-----~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d 342 (498)
..... ...+..-. ...++++++..|.|++||--.-+....+ .....|..+....+|+++++.+ ...+.+.|
T Consensus 554 ~esKdY~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d 630 (776)
T COG5167 554 VESKDYKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTD 630 (776)
T ss_pred eeehhccccccccccccc--cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEe
Confidence 32222 22233322 3458999999999999996433332233 4667899999999999887765 45677777
Q ss_pred ccCCc
Q 010871 343 MESHS 347 (498)
Q Consensus 343 ~~~~~ 347 (498)
++...
T Consensus 631 ~~ik~ 635 (776)
T COG5167 631 VPIKY 635 (776)
T ss_pred ccccc
Confidence 65433
No 433
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.81 E-value=0.023 Score=54.38 Aligned_cols=151 Identities=12% Similarity=0.141 Sum_probs=101.6
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEE
Q 010871 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIK 309 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 309 (498)
|-..-....|.+.+.-++.++.+..|..||- .++.............++|..+++..++.+-..+.+.+||+.+.....
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence 3333445677787777888888888999984 455555555556677888888888888888899999999997643211
Q ss_pred -EeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc
Q 010871 310 -KLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ 388 (498)
Q Consensus 310 -~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~ 388 (498)
.+.....-.-+.|++.+..++.|...|.+.+++......... ...|...++++++. + ..+.+.++.
T Consensus 112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv-------~Gkh~RRgtq~av~-----l-Ed~vil~dc 178 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV-------MGKHQRRGTQIAVT-----L-EDYVILCDC 178 (615)
T ss_pred HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhh-------hcccccceeEEEec-----c-cceeeecCc
Confidence 122222222378999999999999999999998754332221 24477778888775 3 445555555
Q ss_pred CCcEEE
Q 010871 389 DGNLSF 394 (498)
Q Consensus 389 dg~i~i 394 (498)
|..+.+
T Consensus 179 d~~L~v 184 (615)
T KOG2247|consen 179 DNTLSV 184 (615)
T ss_pred HHHHHH
Confidence 554433
No 434
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.73 E-value=1.6 Score=42.42 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=62.8
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEE--EEEcCCC-----------------
Q 010871 225 KLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCI--RFHPVNN----------------- 285 (498)
Q Consensus 225 ~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i--~~~~~~~----------------- 285 (498)
..|......+.+|+.+|++++.++...=|.|.++|+.++..++..++.....|. .......
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 344556667899999999988888877799999999999988888877544321 1111111
Q ss_pred cEEEEEeCCCcEEEEEcCCCcEEEEee
Q 010871 286 NFLSVGNANKEITVFNFSTGRIIKKLV 312 (498)
Q Consensus 286 ~~l~~g~~dg~i~iwd~~~~~~~~~~~ 312 (498)
.+++-+-.-|.|.||.+++|..+..+.
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 133445578899999999888776654
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.58 E-value=4.1 Score=39.88 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=44.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 432 KGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 432 ~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
...|||+|+..|-|++||--.- .....+.+-...|..+..+.+|.+|++.+. ..+.+-|+
T Consensus 572 esGyIa~as~kGDirLyDRig~--rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGK--RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred cCceEEEecCCCceeeehhhcc--hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 5678999999999999997642 223456677788999999999998776654 35555554
No 436
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.55 E-value=9.7 Score=36.10 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=51.4
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCcEE---EEEec-CCCe--EEEEEEcCCCcEEEEEeC-----CCcEEEEEcCCC
Q 010871 242 NNQYIASSSMDK-----TVRVWELTKGDCI---RVIYG-VSSQ--LCIRFHPVNNNFLSVGNA-----NKEITVFNFSTG 305 (498)
Q Consensus 242 ~~~~l~s~s~dg-----~v~iwd~~~~~~~---~~~~~-~~~v--~~i~~~~~~~~~l~~g~~-----dg~i~iwd~~~~ 305 (498)
++.+++.|+.++ .+..+|+.+.+.. ..+.. .... .+++.. ++.+.+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 455666776543 4666777665531 12111 1111 123332 4466666664 235888898776
Q ss_pred cEEEE--eecCCCeEEEEEcCCCCEEEEEcCCCe----EEEEEccCC
Q 010871 306 RIIKK--LVVDSEVTSMDHDHTGQLLFCGDAQGC----IYSISMESH 346 (498)
Q Consensus 306 ~~~~~--~~~~~~i~~l~~~~~~~~l~~~~~dg~----i~i~d~~~~ 346 (498)
+-... +.........+...++++++.|+.++. +.+||....
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 53322 211112222223345677778876542 456776543
No 437
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.52 E-value=8.5 Score=35.38 Aligned_cols=237 Identities=11% Similarity=0.079 Sum_probs=118.0
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECC------CC-cEEEEEec------CCCeEEEEEEcCC-----------CcEE
Q 010871 233 DVTDFDFSSNNQYIASSSMDKTVRVWELT------KG-DCIRVIYG------VSSQLCIRFHPVN-----------NNFL 288 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~------~~-~~~~~~~~------~~~v~~i~~~~~~-----------~~~l 288 (498)
.-+.|+++|.+.+-++...-+...+||.. .. ..+-++.. ...++.+.|+... ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34789999998777777777889999986 12 23333431 2345677776422 1235
Q ss_pred EEEeCCCcEEEEEcCCCcE-----EEEee--c-CCCeEEEEEcCC--CCEEE-EEcCCCeEEEEEccCCccccccccccc
Q 010871 289 SVGNANKEITVFNFSTGRI-----IKKLV--V-DSEVTSMDHDHT--GQLLF-CGDAQGCIYSISMESHSGALSRSHRHR 357 (498)
Q Consensus 289 ~~g~~dg~i~iwd~~~~~~-----~~~~~--~-~~~i~~l~~~~~--~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~ 357 (498)
+.+++||+|.-|...-+.. ...+. . ..--..+++... +.+|. +--..++|.+||-.-............
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 6677999999998533222 12222 1 122344555433 45554 445688999997654322111111111
Q ss_pred ccCCCccceeeEEE-----eEee-EcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeecc
Q 010871 358 TTGKRKCPVTTVQY-----RSFS-LLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLE 431 (498)
Q Consensus 358 ~~~~~~~~i~~~~~-----~~~~-~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (498)
.......+..-..+ -.++ ..++++.=+.+..-|.|-+||.......+......+..+-.+......|.. .
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~----~ 259 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGS----L 259 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCC----C
Confidence 11111111111110 0000 012222222333446888888874322111111111111001000112222 3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccceeeecCCC------CCeEEEEEcC
Q 010871 432 KGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHR------FPVVAVAWNH 475 (498)
Q Consensus 432 ~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~------~~V~~l~~sp 475 (498)
.|.+|+---.||+|..||..++. .+-.+.... ..++.|.|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~--~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGA--QLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCc--eeeeecCCCCCeEEecCeEEeeeCC
Confidence 67888887889999999998865 244444322 3467888865
No 438
>PRK13684 Ycf48-like protein; Provisional
Probab=92.51 E-value=10 Score=36.20 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=82.1
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEE-eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKL-LNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDC 265 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 265 (498)
.+.+.++.+.| ++.++++|. .|.+.. .....++.... ..+-...++++.+.++++.++.+ ..|.+++=..+.|..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 35688899998 776666554 454432 22221222222 22345678999999998776655 567664323444443
Q ss_pred EEEEecC-----CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee----cCCCeEEEEEcCCCCEEEEEcCCC
Q 010871 266 IRVIYGV-----SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV----VDSEVTSMDHDHTGQLLFCGDAQG 336 (498)
Q Consensus 266 ~~~~~~~-----~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~dg 336 (498)
-.....+ ..+..+.+.++ +.++++| .+|.|. .....++.-.... .......+.+..++..++ .+..|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~-~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G 323 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTP-GEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRG 323 (334)
T ss_pred cccccCCccccccceeeEEEcCC-CCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCc
Confidence 2222211 24567888874 3455544 667554 3444444433332 223577777776666555 55677
Q ss_pred eEEEEE
Q 010871 337 CIYSIS 342 (498)
Q Consensus 337 ~i~i~d 342 (498)
.|..++
T Consensus 324 ~il~~~ 329 (334)
T PRK13684 324 VLLRYV 329 (334)
T ss_pred eEEEec
Confidence 777664
No 439
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=2.5 Score=45.43 Aligned_cols=155 Identities=12% Similarity=0.106 Sum_probs=84.4
Q ss_pred CCCeEEEEEcCCCCEEEEEc--CCCeEEEEEccCCccccccccc----ccccCCCccceeeEEEeEeeEcCCCcEEEEEE
Q 010871 314 DSEVTSMDHDHTGQLLFCGD--AQGCIYSISMESHSGALSRSHR----HRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT 387 (498)
Q Consensus 314 ~~~i~~l~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s 387 (498)
...+..+...+|+...++.. .+-.|+.||++........... .+..........++.|.+.- ....+++.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v----p~n~av~l 175 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV----PLNSAVDL 175 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc----cchhhhhc
Confidence 34566666677766554443 3347899998754433211110 01111122223344444211 23456777
Q ss_pred cCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC-CCC
Q 010871 388 QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG-HRF 466 (498)
Q Consensus 388 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~-h~~ 466 (498)
.|+.|++..+...... + ..+.-......++|+| .|..+++|-..|++.-|...-.....+..... ...
T Consensus 176 ~dlsl~V~~~~~~~~~-----v-~s~p~t~~~Tav~WSp-----rGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~y 244 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLAQN-----V-TSFPVTNSQTAVLWSP-----RGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENY 244 (1405)
T ss_pred cccchhhhhhhhhhhh-----h-cccCcccceeeEEecc-----ccceeeEecCCCeEEEeecccceeecccCCCcCCCc
Confidence 8999988877532111 0 0112222233346665 99999999999999988766321111111111 146
Q ss_pred CeEEEEEcCCCCEEEEE
Q 010871 467 PVVAVAWNHGENLLASS 483 (498)
Q Consensus 467 ~V~~l~~sp~~~~l~s~ 483 (498)
.|.+|+|-....+|++-
T Consensus 245 rvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 245 RVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ceeEEEEecceeEEEEe
Confidence 79999999877777654
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.01 E-value=1 Score=39.85 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=45.4
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCcEEEEe---------------ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEcc
Q 010871 284 NNNFLSVGNANKEITVFNFSTGRIIKKL---------------VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISME 344 (498)
Q Consensus 284 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~---------------~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~ 344 (498)
.+.++++-+.+|.+++||+.+++.+..- .....|..+.++.+|.-+++-+ +|..+.|+.+
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4567888889999999999998765443 1335688888998888766554 5788888765
No 441
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.92 E-value=0.86 Score=28.06 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=26.1
Q ss_pred CCeEEEEEccCC---CEEEEEeCCCcEEEEECCCC
Q 010871 232 KDVTDFDFSSNN---QYIASSSMDKTVRVWELTKG 263 (498)
Q Consensus 232 ~~V~~l~~s~~~---~~l~s~s~dg~v~iwd~~~~ 263 (498)
+.|.++.|+|+. .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 48888877899999999853
No 442
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.23 E-value=1.3 Score=45.57 Aligned_cols=73 Identities=29% Similarity=0.397 Sum_probs=46.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCC---CCceeE-Ee-ecC--------------------CCCeEEEEEcc----CCCEEEEE
Q 010871 199 SSDLLAYGASDGTLTVCTVSD---PPKVIK-LL-NGH--------------------SKDVTDFDFSS----NNQYIASS 249 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~---~~~~~~-~~-~~h--------------------~~~V~~l~~s~----~~~~l~s~ 249 (498)
+...|+.+..||.+....... .+.... .+ ..+ ...+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 667888888899888887664 121111 11 111 23455666666 66799999
Q ss_pred eCCCcEEEEECCCCcEEEEEec
Q 010871 250 SMDKTVRVWELTKGDCIRVIYG 271 (498)
Q Consensus 250 s~dg~v~iwd~~~~~~~~~~~~ 271 (498)
+.|+++|+||+.+++++.+...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEET
T ss_pred eCCCeEEEEECCCCeEEEEecc
Confidence 9999999999999999777643
No 443
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.13 E-value=0.15 Score=52.61 Aligned_cols=108 Identities=18% Similarity=0.318 Sum_probs=68.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEE-----------EccCCCEEEEEeCCCcEEEEECC-CC---
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFD-----------FSSNNQYIASSSMDKTVRVWELT-KG--- 263 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~-----------~s~~~~~l~s~s~dg~v~iwd~~-~~--- 263 (498)
+.-++..+-.++.|++..++. .....+.+|...+..++ .+|||+.|+.++.||.++.|.+. +|
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~ 271 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIV 271 (1283)
T ss_pred ccceeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecccc
Confidence 556888888899999988765 22245566877766654 57899999999999998888754 22
Q ss_pred -cEEEEEecCCCe--EEEEEEcCCC--------cEEEEE-eCCCcEEEEEcCCCcEE
Q 010871 264 -DCIRVIYGVSSQ--LCIRFHPVNN--------NFLSVG-NANKEITVFNFSTGRII 308 (498)
Q Consensus 264 -~~~~~~~~~~~v--~~i~~~~~~~--------~~l~~g-~~dg~i~iwd~~~~~~~ 308 (498)
+|+...+.|..- .|.-++.... .+++++ ..+..+++|.....+|+
T Consensus 272 ~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 272 HRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred HhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 345555555422 2322332110 133333 34456888887766665
No 444
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.07 E-value=14 Score=34.97 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=31.6
Q ss_pred CCcEEEEEeCC-----CcEEEEEcCCCcEE---EEee-cCCC--eEEEEEcCCCCEEEEEcC-----CCeEEEEEccCC
Q 010871 284 NNNFLSVGNAN-----KEITVFNFSTGRII---KKLV-VDSE--VTSMDHDHTGQLLFCGDA-----QGCIYSISMESH 346 (498)
Q Consensus 284 ~~~~l~~g~~d-----g~i~iwd~~~~~~~---~~~~-~~~~--i~~l~~~~~~~~l~~~~~-----dg~i~i~d~~~~ 346 (498)
++.+++.|+.+ ..+..+|+.+.+.. ..+. .... -.+++. -++.+++.|+. ...+..||+...
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 44666777654 35667787766531 2221 1111 112222 24566677764 235777776644
No 445
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.07 E-value=10 Score=37.48 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=52.3
Q ss_pred EeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEEC
Q 010871 371 YRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDL 450 (498)
Q Consensus 371 ~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~ 450 (498)
...+..++.|..++-.+.+|.+.++=.+ .|.+-....||+-.+++ +.+.+
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~------------------------rwG~~s~~eDgk~~v~C------Rt~~i 155 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPK------------------------RWGKNSEFEDGKSTVNC------RTTPV 155 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchh------------------------hcCccceecCCCceEEE------Eeecc
Confidence 3455566889999999988876654322 11111111244444333 22333
Q ss_pred CCCCccceeeecCCCCCeEEEEEcCCC---CEEEEEeCCCeEEEeecCCC
Q 010871 451 AKPKHSCVNKLQGHRFPVVAVAWNHGE---NLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 451 ~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~l~s~~~Dg~i~iW~~~~~ 497 (498)
.+ .+.+-. ..-.+..++|+|+. ..|..-+.|..||+|++.+.
T Consensus 156 ~~----~~ftss-~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 156 AE----RFFTSS-TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred cc----eeeccC-CceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 22 111111 22346678999975 56777778999999998763
No 446
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.93 E-value=9.3 Score=37.01 Aligned_cols=117 Identities=15% Similarity=0.253 Sum_probs=76.1
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC---ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP---KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG 263 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 263 (498)
+++|.++.||+ |.+.||+--.+.+|.+++..... ......+..+..|....|+.+ .-++-.+..| +-+|.+...
T Consensus 66 ~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 66 KGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 67999999999 99999999999999999985322 122233344566899999865 5566665555 677765543
Q ss_pred -cEEEEEecC-CCeEEEEEEcCCCcEEEEEe-CCCcEEEEEcCCCc
Q 010871 264 -DCIRVIYGV-SSQLCIRFHPVNNNFLSVGN-ANKEITVFNFSTGR 306 (498)
Q Consensus 264 -~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~-~dg~i~iwd~~~~~ 306 (498)
+.++..+.+ -.+....|.++..-.+++.+ ..+++.=+.++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 334444444 36778888886544444444 34444445554443
No 447
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.89 E-value=3 Score=42.79 Aligned_cols=60 Identities=12% Similarity=0.211 Sum_probs=44.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEc--CCCCEEEEEeCCCeEEEee
Q 010871 433 GEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWN--HGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 433 ~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~~~Dg~i~iW~ 493 (498)
++.-++.+....+.|||...+..+....+ ...+.|.++.|. |+++.+++.|..+.|.++.
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 44444444456799999998664433444 456889999996 7899999999999999885
No 448
>PRK10115 protease 2; Provisional
Probab=90.63 E-value=26 Score=37.22 Aligned_cols=109 Identities=6% Similarity=0.044 Sum_probs=63.4
Q ss_pred cEEEEEEecCCCCEEEEEeC-----CCcEEEEEcCCCCce-eEEeecCCCCeEEEEEccCCCEEEEEeCC------CcEE
Q 010871 189 AVTILKFGHMSSDLLAYGAS-----DGTLTVCTVSDPPKV-IKLLNGHSKDVTDFDFSSNNQYIASSSMD------KTVR 256 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~-----dg~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~s~d------g~v~ 256 (498)
.+..+.++| ++++||.+.. ...|++-|+.+ +.. ...+.+- -..++|.+|++.|+-...+ ..|.
T Consensus 128 ~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~t-g~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLET-GNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCC-CCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 467788999 8888887643 24588888876 332 2222221 1569999999866655432 3577
Q ss_pred EEECCCC--cEEEEEecCC-CeEEEEEEcCCCcEEEEEe---CCCcEEEEEc
Q 010871 257 VWELTKG--DCIRVIYGVS-SQLCIRFHPVNNNFLSVGN---ANKEITVFNF 302 (498)
Q Consensus 257 iwd~~~~--~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~---~dg~i~iwd~ 302 (498)
.+++.++ +-...+.... ......+.+.++.+++..+ .++.+.+++.
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8888887 3333444332 2222334442334433333 3357888884
No 449
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.53 E-value=18 Score=35.20 Aligned_cols=63 Identities=21% Similarity=0.155 Sum_probs=35.2
Q ss_pred CCCEEEEEeCCC----------------------cEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC--
Q 010871 432 KGEYIVAGSEDS----------------------NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYG-- 487 (498)
Q Consensus 432 ~~~~l~~gs~dg----------------------~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg-- 487 (498)
++++++.|+.+. .+.+||..+.+...+..+..-.....++ .-++.+++.||...
T Consensus 279 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av--~~~~~iyv~GG~~~~~ 356 (376)
T PRK14131 279 NGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSV--SWNNGVLLIGGETAGG 356 (376)
T ss_pred CCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEE--EeCCEEEEEcCCCCCC
Confidence 677888887541 3567898876654444333222222233 33577888887542
Q ss_pred ----eEEEeecCC
Q 010871 488 ----IVIVWKRAK 496 (498)
Q Consensus 488 ----~i~iW~~~~ 496 (498)
.|..++.++
T Consensus 357 ~~~~~v~~~~~~~ 369 (376)
T PRK14131 357 KAVSDVTLLSWDG 369 (376)
T ss_pred cEeeeEEEEEEcC
Confidence 455555443
No 450
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.50 E-value=16 Score=34.73 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=40.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCc-cceee-ecCCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 010871 432 KGEYIVAGSEDSNVYFYDLAKPKH-SCVNK-LQGHRFPVVAVAWNHGENLLASSDLYGIVI 490 (498)
Q Consensus 432 ~~~~l~~gs~dg~I~iwd~~~~~~-~~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~ 490 (498)
.|.+|++.-..+.|....+..... ..... +......+..|++.|||.+.++-+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 566777777777888888864421 11122 234445899999999999999888888874
No 451
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.42 E-value=23 Score=38.15 Aligned_cols=114 Identities=12% Similarity=0.099 Sum_probs=77.0
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC----CceeEEeecCCCC----------eEEEEEccCCCEEEEEeCCCc
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDP----PKVIKLLNGHSKD----------VTDFDFSSNNQYIASSSMDKT 254 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~----~~~~~~~~~h~~~----------V~~l~~s~~~~~l~s~s~dg~ 254 (498)
+...|+|+|.+...||.....|.-.||++... .........+.+. -..+.|.++...|+.++. ..
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~ 225 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SK 225 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-Cc
Confidence 67889999988889999999999999999211 1111111122232 247889888778888765 46
Q ss_pred EEEEECCCCcEEE---EEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC
Q 010871 255 VRVWELTKGDCIR---VIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST 304 (498)
Q Consensus 255 v~iwd~~~~~~~~---~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 304 (498)
+.++|+++..... .......+..+.-++.+..+++.-+ ...|...++..
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 8999999876533 2223356778888886555555443 36788888776
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.41 E-value=18 Score=35.12 Aligned_cols=137 Identities=12% Similarity=0.127 Sum_probs=78.8
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEEcCCCC--ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEE-
Q 010871 191 TILKFGHMSSDLLAYGASDGTLTVCTVSDPP--KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIR- 267 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~- 267 (498)
+.+-|. |.+.++.+-..|.+.=|-+..++ -+...-....++|.++.|++|.+.|+.--.|.+|.+.+....+...
T Consensus 26 ngvFfD--DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFD--DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cceeec--cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 344454 33333333334556666665432 1222223456799999999999999999999999999985333221
Q ss_pred ---EEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc-EEEEe-ecCCCeEEEEEcCCCCEEEEE
Q 010871 268 ---VIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR-IIKKL-VVDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 268 ---~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~-~~~~~i~~l~~~~~~~~l~~~ 332 (498)
+.+.. ..+....|... .-++.-. +.-+-+|.....+ .++.. .+.-.|.-..|.++.+.++.+
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s--~e~A~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS--TEIAFIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred HHHHhccCcceeEEEEEecC--eeEEEEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 12222 34778888763 3333332 2335555543322 22222 366678888888887755443
No 453
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.36 E-value=17 Score=34.77 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=31.4
Q ss_pred CCCEEEEEeCC----------------------CcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 010871 432 KGEYIVAGSED----------------------SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY 486 (498)
Q Consensus 432 ~~~~l~~gs~d----------------------g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D 486 (498)
++++++.|+.+ ..+.+||..+.+...+..+.... -...+..-++++++.|+.+
T Consensus 257 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~--~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 257 NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL--AYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc--eeeEEEEcCCEEEEEeccC
Confidence 67788888753 14678998876654444443211 1122333467888888765
No 454
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.36 E-value=3.3 Score=40.59 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=51.4
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEE---------CCCCcEEEE---E------e---cCCCeEEEEEEcCC--CcEEE
Q 010871 233 DVTDFDFSSNNQYIASSSMDKTVRVWE---------LTKGDCIRV---I------Y---GVSSQLCIRFHPVN--NNFLS 289 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s~dg~v~iwd---------~~~~~~~~~---~------~---~~~~v~~i~~~~~~--~~~l~ 289 (498)
.|..+..++.|..++-++.+|.+.+.= ++.|+..-. + . .+-.+..++|+|+. ...|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 567788899999999888898654432 223432211 1 1 11234578999986 67777
Q ss_pred EEeCCCcEEEEEcCCCcEE
Q 010871 290 VGNANKEITVFNFSTGRII 308 (498)
Q Consensus 290 ~g~~dg~i~iwd~~~~~~~ 308 (498)
.-+.|..|++||+...+.+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 7889999999998765444
No 455
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.33 E-value=14 Score=33.62 Aligned_cols=156 Identities=12% Similarity=0.152 Sum_probs=83.2
Q ss_pred CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEE-ccCCcccccc
Q 010871 274 SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSIS-MESHSGALSR 352 (498)
Q Consensus 274 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~ 352 (498)
.+...+.++++..+.++...++.-.+|-...+...........+..-.|++++...++...+....++. ..........
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 567888999776666666334444444444444444433445788889999988777777666666663 1111111111
Q ss_pred cccccccCCCccceeeEEEeEeeEcCCCcEEEEEE---cCCcEEEEEccccccc-eeeEeEeeccC--CceeeeEEEEee
Q 010871 353 SHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT---QDGNLSFFSVALEIQG-YLTFRCSLKLA--PRVHSIRASFCP 426 (498)
Q Consensus 353 ~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s---~dg~i~iwd~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~ 426 (498)
.. . ......|..+.+ +|+|..++... .++.|.+--+.....+ ........... .........|.+
T Consensus 105 v~-~---~~~~~~I~~l~v-----SpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 105 VD-W---PGLRGRITALRV-----SPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred ec-c---cccCCceEEEEE-----CCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 00 0 111114555554 49999888776 3567777666544333 11111111111 112233446765
Q ss_pred eeeccCCCEEEEEeCCC
Q 010871 427 LLSLEKGEYIVAGSEDS 443 (498)
Q Consensus 427 ~~~~~~~~~l~~gs~dg 443 (498)
++.+++.+...+
T Consensus 176 -----~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 -----DSTLVVLGRSAG 187 (253)
T ss_pred -----CCEEEEEeCCCC
Confidence 777777666544
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.97 E-value=1.7 Score=26.47 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=29.3
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEE
Q 010871 282 PVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDH 322 (498)
Q Consensus 282 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~ 322 (498)
|+++.++++...++.|.++|..+++.+..+........++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 34555666666789999999999988888765555555554
No 457
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.72 E-value=10 Score=33.36 Aligned_cols=102 Identities=15% Similarity=0.063 Sum_probs=66.0
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcC--CC----CceeEEeec----CCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVS--DP----PKVIKLLNG----HSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~--~~----~~~~~~~~~----h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
-+.++|+.+...+.++-+.+-.|.-||.+ ++ .+.+..++. ....--.++...+|.+.+++-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 35678887444456666778888888844 21 222333322 111123345556788888888889999999
Q ss_pred CCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEE
Q 010871 260 LTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVG 291 (498)
Q Consensus 260 ~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g 291 (498)
..+|+.+..+.... .+.+++|--.+-.++.+.
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 99999999998774 678889865443455444
No 458
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.97 E-value=20 Score=33.49 Aligned_cols=271 Identities=10% Similarity=0.111 Sum_probs=117.8
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeec--C---CCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNG--H---SKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~--h---~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 261 (498)
...+..|.|.. ...-+|+|. .+. |+...++++.-..... . .-...+|.|..+ ..+++ +..+ +.+...+
T Consensus 16 ~~~l~dV~F~d-~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVD-PNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESS-SS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEESS
T ss_pred CCceEEEEEec-CCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEecC
Confidence 44788999984 555555554 453 4445443433222211 1 123567777643 34444 4445 4455555
Q ss_pred CCcEEEEEec----CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC-CCcEEEEe--ecCCCeEEEEEcCCCCEEEEEcC
Q 010871 262 KGDCIRVIYG----VSSQLCIRFHPVNNNFLSVGNANKEITVFNFS-TGRIIKKL--VVDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 262 ~~~~~~~~~~----~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
.|+.-..+.. ......+....++ ..+++ +..|.| |-.. .|+.-..+ .....+..+..+++|++++++..
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~-~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELA-GDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT-EEEEE-ETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEE-cCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc
Confidence 5654444331 1233444444422 33333 344443 3322 23322222 34467888889999999888876
Q ss_pred CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEe-ec-
Q 010871 335 QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCS-LK- 412 (498)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~-~~- 412 (498)
...+.-|+-....-. .+ .......|..+.|. +++.+.+++ ..|.|++=+...... ..... ..
T Consensus 165 G~~~~s~~~G~~~w~---~~----~r~~~~riq~~gf~-----~~~~lw~~~-~Gg~~~~s~~~~~~~---~w~~~~~~~ 228 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQ---PH----NRNSSRRIQSMGFS-----PDGNLWMLA-RGGQIQFSDDPDDGE---TWSEPIIPI 228 (302)
T ss_dssp SSEEEEE-TT-SS-E---EE----E--SSS-EEEEEE------TTS-EEEEE-TTTEEEEEE-TTEEE---EE---B-TT
T ss_pred ccEEEEecCCCccce---EE----ccCccceehhceec-----CCCCEEEEe-CCcEEEEccCCCCcc---ccccccCCc
Confidence 666666754321110 00 02234556767665 887766644 888888877221111 11110 11
Q ss_pred cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC-ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 010871 413 LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK-HSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIV 491 (498)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~i 491 (498)
.......+.++|.+ ++...++|+ .|.+ +...+.++ .+.......-...++.|.|.+..+-+| -+.+|.|.-
T Consensus 229 ~~~~~~~ld~a~~~-----~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~ 300 (302)
T PF14870_consen 229 KTNGYGILDLAYRP-----PNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLR 300 (302)
T ss_dssp SS--S-EEEEEESS-----SS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEE
T ss_pred ccCceeeEEEEecC-----CCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEE
Confidence 12223344556654 666666555 4533 33444433 111111122345688899986555555 456888876
Q ss_pred e
Q 010871 492 W 492 (498)
Q Consensus 492 W 492 (498)
|
T Consensus 301 ~ 301 (302)
T PF14870_consen 301 Y 301 (302)
T ss_dssp E
T ss_pred e
Confidence 5
No 459
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.79 E-value=22 Score=33.78 Aligned_cols=180 Identities=11% Similarity=0.145 Sum_probs=84.0
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCe------EEEEEccCCccccc--ccccccccCCCc-cce--eeEEEeEeeEcCCCcEE
Q 010871 315 SEVTSMDHDHTGQLLFCGDAQGC------IYSISMESHSGALS--RSHRHRTTGKRK-CPV--TTVQYRSFSLLAGGPVL 383 (498)
Q Consensus 315 ~~i~~l~~~~~~~~l~~~~~dg~------i~i~d~~~~~~~~~--~~~~~~~~~~~~-~~i--~~~~~~~~~~s~~~~~l 383 (498)
+.+..+.+.+++..+++.+.+|. ++.+.+........ .......+.... .+. ..+..-.+.+.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45778888866666666677777 66666654211110 000000001111 111 11111222333778877
Q ss_pred EEEEcC------CcEEEEEccccccceeeEeEeeccCC---ceeeeEEEEeeeeeccCCCEEEEEeCC-----C--c---
Q 010871 384 LTCTQD------GNLSFFSVALEIQGYLTFRCSLKLAP---RVHSIRASFCPLLSLEKGEYIVAGSED-----S--N--- 444 (498)
Q Consensus 384 ~t~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~gs~d-----g--~--- 444 (498)
++.-.+ ..|..++................... ........|-.++.+++|+.|+++.+. + .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~ 179 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPD 179 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccc
Confidence 777666 77888876522111111111110000 111112244455556699966665442 2 1
Q ss_pred ----EEE--EECCCCC---ccceeeecC-----CCCCeEEEEEcCCCCEEEEEe-----CCCeEEEeec
Q 010871 445 ----VYF--YDLAKPK---HSCVNKLQG-----HRFPVVAVAWNHGENLLASSD-----LYGIVIVWKR 494 (498)
Q Consensus 445 ----I~i--wd~~~~~---~~~~~~~~~-----h~~~V~~l~~sp~~~~l~s~~-----~Dg~i~iW~~ 494 (498)
+++ ||..+.. .+....+.. ....|..+.+.+++++|+-=- ....++|+.+
T Consensus 180 ~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 180 NGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred cCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 444 4444311 112222222 356789999999998776321 2345555544
No 460
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.47 E-value=24 Score=39.07 Aligned_cols=137 Identities=12% Similarity=0.201 Sum_probs=81.8
Q ss_pred eCCCcEEEEEcCCCCceeEEeecCCCCeEEEEE--------ccCCCEEEEEeCCCcEEEEECCC----CcE---E--EEE
Q 010871 207 ASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDF--------SSNNQYIASSSMDKTVRVWELTK----GDC---I--RVI 269 (498)
Q Consensus 207 ~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--------s~~~~~l~s~s~dg~v~iwd~~~----~~~---~--~~~ 269 (498)
+.|..+.+|+.++ ......+.+-...|..+.. .|.=++|+..+.--.|.++-+.- +.. . .++
T Consensus 96 TiDn~L~lWny~~-~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYES-DNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCC-CCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3478899999998 5666666666666666654 22334444444444566654431 111 0 112
Q ss_pred ec-CCCeEEEEEEcCCCcEEEEEeCCCcEEE--EEcCCC---c------------------EEEEe-ecCCCeEEEEEcC
Q 010871 270 YG-VSSQLCIRFHPVNNNFLSVGNANKEITV--FNFSTG---R------------------IIKKL-VVDSEVTSMDHDH 324 (498)
Q Consensus 270 ~~-~~~v~~i~~~~~~~~~l~~g~~dg~i~i--wd~~~~---~------------------~~~~~-~~~~~i~~l~~~~ 324 (498)
.. ...+.|+.. .++++++++| .||.|+- |....+ + ..... .+..+|..+.++.
T Consensus 175 ~~dg~~V~~I~~-t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 175 SVDGVSVNCITY-TENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred ecCCceEEEEEe-ccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 22 235677774 4466777766 6664432 222211 1 00111 2356899999998
Q ss_pred CCCEEEEEcCCCeEEEEEccCC
Q 010871 325 TGQLLFCGDAQGCIYSISMESH 346 (498)
Q Consensus 325 ~~~~l~~~~~dg~i~i~d~~~~ 346 (498)
.-..+.+-++.|.|.+|++...
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ccceeeeeccCceEEEEEccCC
Confidence 8889999999999999999763
No 461
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=88.43 E-value=22 Score=33.34 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=40.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC-CceeEEeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEEECC
Q 010871 199 SSDLLAYGASDGTLTVCTVSDP-PKVIKLLNGHSKDVTDFDFSSNNQYIASSSM-DKTVRVWELT 261 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~ 261 (498)
++++|+.|..+| +.+.++... ....+.+ +...|+++...+.-+.|++-+. ...++++++.
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 336899999999 455555532 2233333 5678999999988877776653 3349999984
No 462
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.42 E-value=5 Score=35.53 Aligned_cols=64 Identities=23% Similarity=0.228 Sum_probs=45.6
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeE-E------ee-------cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIK-L------LN-------GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD 264 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~-~------~~-------~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 264 (498)
.+.+|++-..+|.+++||+.+ .+.+. . +. .....|..+.++.+|.-|++-+ +|....|+..-+.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~-~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKK-GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGC 98 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCC-CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccce
Confidence 678899999999999999987 33221 1 22 3556788888888887666655 4677888866443
No 463
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.37 E-value=2.8 Score=25.41 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=28.5
Q ss_pred cCCCEEEEEe-CCCcEEEEECCCCcEEEEEecCCCeEEEEE
Q 010871 241 SNNQYIASSS-MDKTVRVWELTKGDCIRVIYGVSSQLCIRF 280 (498)
Q Consensus 241 ~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~ 280 (498)
|++++|+++. .+++|.++|..+++.+..+........++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4677666554 578999999999988888776554445444
No 464
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.11 E-value=10 Score=34.90 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=56.4
Q ss_pred CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEe------CCCcEEEEECCCCcEEEEEec-----CCCeEE
Q 010871 209 DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS------MDKTVRVWELTKGDCIRVIYG-----VSSQLC 277 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~-----~~~v~~ 277 (498)
-..|++||..+ .+-...-.+-.+.|++|.|..+.++++.|. ....+..||+.+......-.+ .+++..
T Consensus 15 C~~lC~yd~~~-~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDN-SQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCC-CEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 34599999876 333333334567899999987776777664 345688899887654222221 245666
Q ss_pred EEEEcCCC-cEEEEEe-CCC--cEEEEEcCCC
Q 010871 278 IRFHPVNN-NFLSVGN-ANK--EITVFNFSTG 305 (498)
Q Consensus 278 i~~~~~~~-~~l~~g~-~dg--~i~iwd~~~~ 305 (498)
+.+...+. ++.+.|. .+| .|..||=.+.
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 66654444 4454443 233 3555654333
No 465
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=88.09 E-value=25 Score=33.63 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCcEEEE--eecC-CCeEEEEEcCCCCEEEEEcC
Q 010871 295 KEITVFNFSTGRIIKK--LVVD-SEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 295 g~i~iwd~~~~~~~~~--~~~~-~~i~~l~~~~~~~~l~~~~~ 334 (498)
..+.+||..+.+-... +... ..-.+++ ..++++++.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeee
Confidence 4578888877654332 2211 1112222 235677777764
No 466
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.08 E-value=22 Score=32.85 Aligned_cols=209 Identities=11% Similarity=0.139 Sum_probs=107.5
Q ss_pred CeEEEEEEcCCCcEEEEEeCCCcEEEEEcC------CC-cEEEEee------cCCCeEEEEEcCCCC------------E
Q 010871 274 SQLCIRFHPVNNNFLSVGNANKEITVFNFS------TG-RIIKKLV------VDSEVTSMDHDHTGQ------------L 328 (498)
Q Consensus 274 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~------~~-~~~~~~~------~~~~i~~l~~~~~~~------------~ 328 (498)
....++++|.+ .+.++....+...+||.. .. .++..+. .....+.+.|+.... .
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 34578999944 666666677889999986 12 2222332 234577777764332 3
Q ss_pred EEEEcCCCeEEEEEccCCcccccccccccccCCCcccee-eEEEeEeeEcCCCcEEEEE-EcCCcEEEEEccccccceee
Q 010871 329 LFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVT-TVQYRSFSLLAGGPVLLTC-TQDGNLSFFSVALEIQGYLT 406 (498)
Q Consensus 329 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~s~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~ 406 (498)
++.++++|+|.-|........+...... ........|. .+++. ....+.+|+.+ -..++|.+||-.-...
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~-~d~s~~gavYkGLAi~---~~~~~~~LYaadF~~g~IDVFd~~f~~~---- 174 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIV-VDASQQGNVYKGLAVG---PTGGGDYLYAANFRQGRIDVFKGSFRPP---- 174 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEE-EccCCCcceeeeeEEe---ecCCCceEEEeccCCCceEEecCccccc----
Confidence 6778999999999743222210000000 0011112222 22221 11234555444 4678999998653311
Q ss_pred EeEeeccCCceeeeEEEEeeeee--------------ccCCCEEEEEeCCCcEEEEECCCCCccceeeec--CCCCCeEE
Q 010871 407 FRCSLKLAPRVHSIRASFCPLLS--------------LEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ--GHRFPVVA 470 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~--~h~~~V~~ 470 (498)
.....+... .+...|.|.-+ .+++..=+.|..-|.|-+||+.. ..++.+. +.-...+.
T Consensus 175 -~~~g~F~DP--~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G---~l~~r~as~g~LNaPWG 248 (336)
T TIGR03118 175 -PLPGSFIDP--ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG---QLLRRVASSGRLNAPWG 248 (336)
T ss_pred -cCCCCccCC--CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC---cEEEEeccCCcccCCce
Confidence 000000000 01111111100 01222223344457899999874 3455552 33345677
Q ss_pred EEEcC------CCCEEEEEeCCCeEEEeecCCC
Q 010871 471 VAWNH------GENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 471 l~~sp------~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
|+..| .+.+|+---.||+|.++|..++
T Consensus 249 ~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 249 LAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred eeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 77755 4667776667999999997654
No 467
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.78 E-value=18 Score=31.55 Aligned_cols=102 Identities=10% Similarity=0.166 Sum_probs=62.6
Q ss_pred CEEEEEeCCCcEEEEECC--CCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCC---C---cEEEE-EcCC----CcEEE-
Q 010871 244 QYIASSSMDKTVRVWELT--KGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNAN---K---EITVF-NFST----GRIIK- 309 (498)
Q Consensus 244 ~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d---g---~i~iw-d~~~----~~~~~- 309 (498)
+.|+.+...+.|.+|++. ..+.+.++..-+.+..+.++..| .+|++--.+ . .+++| |.+. .+.+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 355444566789999988 44667778778899999999855 566664222 2 45665 2211 11111
Q ss_pred ----------------------EeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCc
Q 010871 310 ----------------------KLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 310 ----------------------~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~ 347 (498)
.+.....+.+++..|-...|++|+ ++.+.+|.+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 112345677888777655566665 4577888775443
No 468
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.67 E-value=0.063 Score=51.51 Aligned_cols=141 Identities=16% Similarity=0.251 Sum_probs=95.2
Q ss_pred ccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCc
Q 010871 186 CKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA-SSSMDKTVRVWELTKGD 264 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~ 264 (498)
|-..-....|-| .+.-++.++.+..|..||-.. +....+. -.+....++|..++..++ .+-..+.+.+||+.+..
T Consensus 33 alv~pi~~~w~~-e~~nlavaca~tiv~~YD~ag--q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 33 ALVGPIIHRWRP-EGHNLAVACANTIVIYYDKAG--QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred hccccceeeEec-CCCceehhhhhhHHHhhhhhc--ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 344445567888 444588888888899998653 3322222 345567788888776544 45567889999998653
Q ss_pred EEEE-EecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEE
Q 010871 265 CIRV-IYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFC 331 (498)
Q Consensus 265 ~~~~-~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~ 331 (498)
.-.. +.+...-.-..|++ +...++.|...|.+.|++..+.+.+...+ |..+++++++.+.+..+..
T Consensus 109 tqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 109 TQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred HHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence 2111 11111112256666 66777888889999999999888887776 8999999999988764443
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.50 E-value=4.2 Score=39.18 Aligned_cols=161 Identities=14% Similarity=0.123 Sum_probs=94.1
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecC-CC----CeE-EEEEccCCCEEEEEeCCCcEEEE-E
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGH-SK----DVT-DFDFSSNNQYIASSSMDKTVRVW-E 259 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h-~~----~V~-~l~~s~~~~~l~s~s~dg~v~iw-d 259 (498)
-..|..+-..| +|+.|..-+. .++.|+++.+..-..+.+-.. .+ .|+ .+..-..|.-|+.++.||-|.-| |
T Consensus 220 ~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 220 FSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred ccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 45677788889 8887776554 678899887632222222211 11 122 12223356678888999998877 4
Q ss_pred CCCC-c----EEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC
Q 010871 260 LTKG-D----CIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 260 ~~~~-~----~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
+..+ . .++.++.......+..-..+.+-+++-+..|++.++.....+.+..-..-..+.-++++|.+.++++- .
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e-~ 376 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSE-D 376 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheee-c
Confidence 4432 1 12222222111222222223455666778888888876555544433334467778999999988764 4
Q ss_pred CCeEEEEEccCCcccc
Q 010871 335 QGCIYSISMESHSGAL 350 (498)
Q Consensus 335 dg~i~i~d~~~~~~~~ 350 (498)
.|.|+++.++......
T Consensus 377 ~gki~~~~l~Nr~Pei 392 (733)
T COG4590 377 QGKIRLAQLENRNPEI 392 (733)
T ss_pred CCceEEEEecCCCCCc
Confidence 6778998887655443
No 470
>PLN02193 nitrile-specifier protein
Probab=87.30 E-value=35 Score=34.38 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=30.0
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCCccceeee---cCCCCCeEEEEEcCCCCEEEEEeCC
Q 010871 432 KGEYIVAGSED----SNVYFYDLAKPKHSCVNKL---QGHRFPVVAVAWNHGENLLASSDLY 486 (498)
Q Consensus 432 ~~~~l~~gs~d----g~I~iwd~~~~~~~~~~~~---~~h~~~V~~l~~sp~~~~l~s~~~D 486 (498)
++++++.|+.+ ..+.+||+.+.+...+... ........++.+ ++++++.|+.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~~ 387 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVIFGGEI 387 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEEECCcc
Confidence 67777777755 4689999998665443322 111111222222 56777778753
No 471
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.20 E-value=41 Score=35.06 Aligned_cols=84 Identities=13% Similarity=0.226 Sum_probs=49.8
Q ss_pred CCcEEEEECCCCcEEEEE-ecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE--ee---cCCCeEEEEEcCC
Q 010871 252 DKTVRVWELTKGDCIRVI-YGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK--LV---VDSEVTSMDHDHT 325 (498)
Q Consensus 252 dg~v~iwd~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~---~~~~i~~l~~~~~ 325 (498)
--.|+|+++. |+.+..+ -.|..++.+.|+.+ ..|++-..+|++++|++.. +.+.. .+ ....|..+.+..+
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD--EELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCC--ceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecC
Confidence 3458888865 4444433 34568889999863 4566677999999999853 33333 21 2234555555555
Q ss_pred CCEEEEEcCCCeEEEE
Q 010871 326 GQLLFCGDAQGCIYSI 341 (498)
Q Consensus 326 ~~~l~~~~~dg~i~i~ 341 (498)
| +++-..+|.+.+.
T Consensus 139 G--Vavlt~~g~v~~i 152 (829)
T KOG2280|consen 139 G--VAVLTVSGQVILI 152 (829)
T ss_pred c--eEEEecCCcEEEE
Confidence 5 4444445655544
No 472
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=87.09 E-value=31 Score=33.55 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=19.0
Q ss_pred cEEEEEcCCCcEEEEe--ec-CCCeEEEEEcCCCCEEEEEcC
Q 010871 296 EITVFNFSTGRIIKKL--VV-DSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 296 ~i~iwd~~~~~~~~~~--~~-~~~i~~l~~~~~~~~l~~~~~ 334 (498)
.+.+||..+.+-...- .. ...-.++.. -++++++.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~-~~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVI-KGNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEE-ECCEEEEEeee
Confidence 5888898776543322 21 111223333 24566666653
No 473
>PLN02153 epithiospecifier protein
Probab=86.83 E-value=30 Score=33.09 Aligned_cols=103 Identities=12% Similarity=0.189 Sum_probs=50.4
Q ss_pred CCCEEEEEeCC-------CcEEEEEcCCCCceeEEeecC--CC-----CeEEEEEccCCCEEEEEeCC-----CcEEEEE
Q 010871 199 SSDLLAYGASD-------GTLTVCTVSDPPKVIKLLNGH--SK-----DVTDFDFSSNNQYIASSSMD-----KTVRVWE 259 (498)
Q Consensus 199 ~~~~lasg~~d-------g~i~iwd~~~~~~~~~~~~~h--~~-----~V~~l~~s~~~~~l~s~s~d-----g~v~iwd 259 (498)
++.+++.|+.+ ..+.+||+.+. + -..+... .. ....+.+ ++++++.|+.+ ..+.++|
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~-W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd 107 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTH-T-WSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYD 107 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCC-E-EEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEE
Confidence 45667767653 25778887652 1 1122111 00 1112222 45566677653 2477888
Q ss_pred CCCCcEEEE--Eec---CCC--eEEEEEEcCCCcEEEEEeCC-----------CcEEEEEcCCCcE
Q 010871 260 LTKGDCIRV--IYG---VSS--QLCIRFHPVNNNFLSVGNAN-----------KEITVFNFSTGRI 307 (498)
Q Consensus 260 ~~~~~~~~~--~~~---~~~--v~~i~~~~~~~~~l~~g~~d-----------g~i~iwd~~~~~~ 307 (498)
..+.+-... +.. ... -.+++.. ++.+++.|+.+ ..+.+||..+.+-
T Consensus 108 ~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 108 TVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171 (341)
T ss_pred CCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence 877653321 110 111 1122222 44666666643 2477888876653
No 474
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.46 E-value=45 Score=34.78 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 010871 209 DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK 262 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 262 (498)
--.|+|++.. +..+..+.-..+.+..+.|+.+. .|+....+|++.++++-.
T Consensus 63 ~~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNIS--GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEecc--ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence 3458888876 45555444444488999999766 566678999999999763
No 475
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=86.16 E-value=42 Score=34.17 Aligned_cols=142 Identities=9% Similarity=0.106 Sum_probs=75.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCc-eeEEeecC-CCCeEEEEEccCC-CEEEEEeCC--CcEEEEECCCCcEEEEEecCC
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPK-VIKLLNGH-SKDVTDFDFSSNN-QYIASSSMD--KTVRVWELTKGDCIRVIYGVS 273 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~-~~~~~~~h-~~~V~~l~~s~~~-~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~ 273 (498)
++..++.+..+|.+....+..... .....-+. .....++.+..+| .+|+.||.- +.+.-|....-+.+..+..-+
T Consensus 221 ~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~ 300 (504)
T PF10433_consen 221 DGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWG 300 (504)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----
T ss_pred CCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcC
Confidence 677889999999999888775332 12222222 4556777776655 477777764 455555655556777788888
Q ss_pred CeEEEEEEcC---CC-------cEEEEEe--CCCcEEEEEcCCCcEEE-----EeecC--CCeEEEEEcC-CCCEEEEEc
Q 010871 274 SQLCIRFHPV---NN-------NFLSVGN--ANKEITVFNFSTGRIIK-----KLVVD--SEVTSMDHDH-TGQLLFCGD 333 (498)
Q Consensus 274 ~v~~i~~~~~---~~-------~~l~~g~--~dg~i~iwd~~~~~~~~-----~~~~~--~~i~~l~~~~-~~~~l~~~~ 333 (498)
++..++..+. +. .++++++ .+|.+++..- |-... ..... ..++.+.... ++.+|+++.
T Consensus 301 Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 301 PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 9988888642 12 3344433 4677887743 32222 12222 3344444332 245677666
Q ss_pred CCCeEEEEEc
Q 010871 334 AQGCIYSISM 343 (498)
Q Consensus 334 ~dg~i~i~d~ 343 (498)
.+.+ +++.+
T Consensus 379 ~~~T-~vl~~ 387 (504)
T PF10433_consen 379 PNET-RVLQI 387 (504)
T ss_dssp SSEE-EEEEE
T ss_pred CCce-EEEEE
Confidence 5544 34433
No 476
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=85.66 E-value=19 Score=32.31 Aligned_cols=146 Identities=15% Similarity=0.172 Sum_probs=67.3
Q ss_pred EEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCC-C--eEEEEEccCCcccccccccccccCCCccceeeEEEe
Q 010871 297 ITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQ-G--CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYR 372 (498)
Q Consensus 297 i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 372 (498)
-.+||+.+++..... ....-..+-.+.++|++|.+|+.. | .+++++................ -.....-.
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~-m~~~RWYp----- 121 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND-MQSGRWYP----- 121 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc-ccCCCccc-----
Confidence 457888877653222 222233344577899999988752 2 4777765331111110000000 00011111
Q ss_pred EeeEcCCCcEEEEEEcCCc-EEEEEccccccceeeEeEeeccCCceeeeEEEEee-eeeccCCCEEEEEeCCCcEEEEEC
Q 010871 373 SFSLLAGGPVLLTCTQDGN-LSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP-LLSLEKGEYIVAGSEDSNVYFYDL 450 (498)
Q Consensus 373 ~~~~s~~~~~l~t~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~gs~dg~I~iwd~ 450 (498)
.....+||+.|+.|+.... ..+|.-.................. .....+.| +...|+|++++.+..++ .|||.
T Consensus 122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~---~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~ 196 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSD---TLPNNLYPFVHLLPDGNLFIFANRGS--IIYDY 196 (243)
T ss_pred cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhc---cCccccCceEEEcCCCCEEEEEcCCc--EEEeC
Confidence 1222389999999988743 334433211111111111100000 01112222 22337999999888754 56687
Q ss_pred CCC
Q 010871 451 AKP 453 (498)
Q Consensus 451 ~~~ 453 (498)
.+.
T Consensus 197 ~~n 199 (243)
T PF07250_consen 197 KTN 199 (243)
T ss_pred CCC
Confidence 764
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.34 E-value=68 Score=35.83 Aligned_cols=176 Identities=17% Similarity=0.327 Sum_probs=93.0
Q ss_pred EEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEE--------EEEcCC
Q 010871 214 VCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCI--------RFHPVN 284 (498)
Q Consensus 214 iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i--------~~~~~~ 284 (498)
+|.+. .+.+..+. |...-..+-+-|.=.+... +-|..+.+|+.+++.....+.+-+ .|..+ .|.|.=
T Consensus 64 v~~IP--~el~eq~~-~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I 139 (1311)
T KOG1900|consen 64 VVNIP--DELLEQFS-NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI 139 (1311)
T ss_pred cccCC--HHHHHHhc-CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh
Confidence 45554 23343343 3333344445554333332 347889999999876665555432 23322 233323
Q ss_pred CcEEEEEeCCCcEEEEEcCC----CcE---E--EEee-cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccc--
Q 010871 285 NNFLSVGNANKEITVFNFST----GRI---I--KKLV-VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSR-- 352 (498)
Q Consensus 285 ~~~l~~g~~dg~i~iwd~~~----~~~---~--~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-- 352 (498)
.++|+.+ .--.|.++-+.- +.. . .++. .+..|.++....+|+.+++|- ||.|+-+-.....+-...
T Consensus 140 qhlLvva-T~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc 217 (1311)
T KOG1900|consen 140 QHLLVVA-TPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRC 217 (1311)
T ss_pred heeEEec-ccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhccc
Confidence 3444444 334455553321 111 0 1122 356788999888888776655 555543322221111100
Q ss_pred -------------cccc-cccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 353 -------------SHRH-RTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 353 -------------~~~~-~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
.... .....+..+|..+.+. .....+.+-+..|+|.+||+...
T Consensus 218 ~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID-----~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 218 RKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID-----NSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ccccCchhHHHHhhhhhhcCCCCCCCcceeeEec-----cccceeeeeccCceEEEEEccCC
Confidence 0000 0113556677777765 67788999999999999999863
No 478
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.23 E-value=18 Score=37.44 Aligned_cols=67 Identities=12% Similarity=0.285 Sum_probs=44.4
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
.-++++.-+| .+.-++.+..||.|++|+... .+..+.. ....+-..+.|...| |+++..|..+.-|.
T Consensus 15 e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~-r~qski~-~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHP-GGQSFVLAHQDGSIILFNFIP-RRQSKIC-EEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecC-CCceEEEEecCCcEEEEeecc-cchhhhh-hhcCCccceeeeccc--eEEEeccchhheee
Confidence 3577888889 999999999999999999875 2221111 122233445665444 56666677777775
No 479
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.90 E-value=3.6 Score=42.37 Aligned_cols=66 Identities=9% Similarity=0.106 Sum_probs=40.1
Q ss_pred CCCEEEEEeCCCcEEEEECCC---CCcccee----------eec-----------CCCCCeEEEEEcC----CCCEEEEE
Q 010871 432 KGEYIVAGSEDSNVYFYDLAK---PKHSCVN----------KLQ-----------GHRFPVVAVAWNH----GENLLASS 483 (498)
Q Consensus 432 ~~~~l~~gs~dg~I~iwd~~~---~~~~~~~----------~~~-----------~h~~~V~~l~~sp----~~~~l~s~ 483 (498)
+...++.+..||.+....... ....... .+. .....+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 567788888888888887664 1110000 010 0123456666666 67899999
Q ss_pred eCCCeEEEeecCCC
Q 010871 484 DLYGIVIVWKRAKT 497 (498)
Q Consensus 484 ~~Dg~i~iW~~~~~ 497 (498)
+.|+++|+|++.++
T Consensus 237 ~~D~~LRiW~l~t~ 250 (547)
T PF11715_consen 237 SRDHTLRIWSLETG 250 (547)
T ss_dssp ETTSEEEEEETTTT
T ss_pred eCCCeEEEEECCCC
Confidence 99999999999876
No 480
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=84.46 E-value=15 Score=36.47 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=22.2
Q ss_pred eeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 366 VTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 366 i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
|..+... +..+.+++.+.+|.|.+|++..
T Consensus 192 I~~v~~d-----~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVD-----PSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEE-----TTTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEec-----CCcCEEEEEeCCCcEEEEEEeC
Confidence 5555554 7779999999999999999975
No 481
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=82.90 E-value=64 Score=33.60 Aligned_cols=151 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEc---------CCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC-CCc--
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTV---------SDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM-DKT-- 254 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~---------~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~-dg~-- 254 (498)
.+.|-.|.|.+ ++..+++...+|.|.+||. ...........-| .-|.....-....++++.+. ++.
T Consensus 129 ~~kvv~Ik~~~-~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 129 DDKVVGIKFSS-DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred ccceEEEEEec-CCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcE
Q ss_pred -EEEEEC--CCCcEEEE---EecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecC-------CCeEEEE
Q 010871 255 -VRVWEL--TKGDCIRV---IYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD-------SEVTSMD 321 (498)
Q Consensus 255 -v~iwd~--~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~i~~l~ 321 (498)
.+++.+ +....... ...........|.-..+.+..- .+++|.+|++...+....+... ..+.++.
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Q ss_pred EcCCCCEEEEEcCCCeEEEEEc
Q 010871 322 HDHTGQLLFCGDAQGCIYSISM 343 (498)
Q Consensus 322 ~~~~~~~l~~~~~dg~i~i~d~ 343 (498)
--...+.|++. ++.|++.|+
T Consensus 285 ~~s~nRvLLs~--~nkIyLld~ 304 (670)
T PF10395_consen 285 PPSPNRVLLSV--NNKIYLLDL 304 (670)
T ss_pred cCCCCeEEEEc--CCEEEEEee
No 482
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=82.06 E-value=93 Score=34.91 Aligned_cols=22 Identities=9% Similarity=0.071 Sum_probs=15.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe
Q 010871 463 GHRFPVVAVAWNHGENLLASSD 484 (498)
Q Consensus 463 ~h~~~V~~l~~sp~~~~l~s~~ 484 (498)
+|-..+.++|.+|||...+.-.
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~ 680 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADS 680 (1899)
T ss_pred cccCCcceEEECCCCcEEEecC
Confidence 3556788899999988666443
No 483
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=81.09 E-value=55 Score=31.66 Aligned_cols=109 Identities=13% Similarity=0.061 Sum_probs=66.8
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceeEEeecC--CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC--CeE
Q 010871 201 DLLAYGASDGTLTVCTVSDPPKVIKLLNGH--SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS--SQL 276 (498)
Q Consensus 201 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~h--~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v~ 276 (498)
..+..+..+|.|.-.|..+ ...+.....- ...+.+-.+..+|+ |+.++.+|.+...|..+|+.+....... ...
T Consensus 69 g~v~~~~~~G~i~A~d~~~-g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDT-GLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCC-CcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 3455556777777777766 3333221111 12222223333664 7788889989999998999988887766 111
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec
Q 010871 277 CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV 313 (498)
Q Consensus 277 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 313 (498)
..... ....+..++.++.+...|..+|+.......
T Consensus 147 ~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 147 SPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred cCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEEec
Confidence 12222 223445455789999999999998877654
No 484
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.87 E-value=9.6 Score=32.29 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=24.5
Q ss_pred CeEEEEEccCC------CEEEEEeCCCcEEEEECCC
Q 010871 233 DVTDFDFSSNN------QYIASSSMDKTVRVWELTK 262 (498)
Q Consensus 233 ~V~~l~~s~~~------~~l~s~s~dg~v~iwd~~~ 262 (498)
.|..++|||.| .+|++...+|.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999954 4788889999999998663
No 485
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=80.81 E-value=56 Score=31.60 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=61.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCC---CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCC--C
Q 010871 242 NNQYIASSSMDKTVRVWELTKGDCIRVIYGVS---SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDS--E 316 (498)
Q Consensus 242 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~--~ 316 (498)
++ .++.+..+|.|.-.|.++++.+....... .+..-.+..++ .++.++.++.+..+|..+|+.+....... .
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G--~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG--KIYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC--eEEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 44 55556788888888888888765444332 12222222223 47778899999999999999998886555 1
Q ss_pred eEEEEEcCCCCEEEEEcCCCeEEEEEccCCc
Q 010871 317 VTSMDHDHTGQLLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 317 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~ 347 (498)
+..-.+-.++ .+..++.+|.++..+..+.+
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~ 174 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGT 174 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCc
Confidence 2222222232 33444466777776655433
No 486
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.41 E-value=46 Score=32.93 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 466 FPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 466 ~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
..|.+++..+..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999998889999999999999999964
No 487
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.23 E-value=10 Score=22.58 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=20.5
Q ss_pred eecCCCCeEEEEEccCCCEEEEEe-CC--CcEEEE
Q 010871 227 LNGHSKDVTDFDFSSNNQYIASSS-MD--KTVRVW 258 (498)
Q Consensus 227 ~~~h~~~V~~l~~s~~~~~l~s~s-~d--g~v~iw 258 (498)
+......-....|+|||+.|+-++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334556678899999998877554 44 565555
No 488
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=79.91 E-value=63 Score=31.62 Aligned_cols=148 Identities=6% Similarity=0.013 Sum_probs=0.0
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD-- 264 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~-- 264 (498)
.+....+..++ ++.+++.|.....++-||--. ..-...-......+..+.|.+++..++++ .+--.+|....++
T Consensus 238 ~Gsf~~v~~~~-dG~~~~vg~~G~~~~s~d~G~-~~W~~~~~~~~~~l~~v~~~~dg~l~l~g--~~G~l~~S~d~G~~~ 313 (398)
T PLN00033 238 TGTFSTVNRSP-DGDYVAVSSRGNFYLTWEPGQ-PYWQPHNRASARRIQNMGWRADGGLWLLT--RGGGLYVSKGTGLTE 313 (398)
T ss_pred ccceeeEEEcC-CCCEEEEECCccEEEecCCCC-cceEEecCCCccceeeeeEcCCCCEEEEe--CCceEEEecCCCCcc
Q ss_pred ---EEEEEecC---CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe---ecCCCeEEEEEcCCCCEEEEEcCC
Q 010871 265 ---CIRVIYGV---SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL---VVDSEVTSMDHDHTGQLLFCGDAQ 335 (498)
Q Consensus 265 ---~~~~~~~~---~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~d 335 (498)
........ ..+..+.|.+ ++..+++| ..|.+....-.-..-.... .....+..+.|.++++.+++|. +
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~ 390 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRS-KKEAWAAG-GSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-D 390 (398)
T ss_pred cccceeecccCCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-C
Q ss_pred CeEEEE
Q 010871 336 GCIYSI 341 (498)
Q Consensus 336 g~i~i~ 341 (498)
|.|..|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
No 489
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=79.63 E-value=96 Score=33.55 Aligned_cols=158 Identities=11% Similarity=0.153 Sum_probs=90.4
Q ss_pred cCCCCeEEEEEc---c----CCCEEEEEeCCCcEEEEEC------CC---------CcEEEEEe----cCCCeEEEEEEc
Q 010871 229 GHSKDVTDFDFS---S----NNQYIASSSMDKTVRVWEL------TK---------GDCIRVIY----GVSSQLCIRFHP 282 (498)
Q Consensus 229 ~h~~~V~~l~~s---~----~~~~l~s~s~dg~v~iwd~------~~---------~~~~~~~~----~~~~v~~i~~~~ 282 (498)
.-..+|..|+|. . ..++|++- ....+.|... .. ...+..+. +..+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999988 2 12355544 3445666661 11 12344444 334667999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCc----EEEEe--ecC----------CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCC
Q 010871 283 VNNNFLSVGNANKEITVFNFSTGR----IIKKL--VVD----------SEVTSMDHDHTGQLLFCGDAQGCIYSISMESH 346 (498)
Q Consensus 283 ~~~~~l~~g~~dg~i~iwd~~~~~----~~~~~--~~~----------~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~ 346 (498)
.....|++-...|...||++.... ....+ ... ..-..+.|.++...|++++. ..+.++|++..
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 988899999999999999992111 01111 111 22346788877777777664 45778888755
Q ss_pred cccccccccccccCCCccceeeEEEeEeeEcCC-CcEEEEEEcCCcEEEEEccc
Q 010871 347 SGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG-GPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~-~~~l~t~s~dg~i~iwd~~~ 399 (498)
..... .........|..+.-. +. ..+++.-+ ...|...++..
T Consensus 235 ~~~~~-----l~~~~~~~~IlDv~~~-----~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEY-----LVTAKTWSWILDVKRS-----PDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred Cccch-----hccCCChhheeeEEec-----CCccceEEEEe-cCeEEEEEccC
Confidence 43221 0112334455555543 33 12222222 25677777775
No 490
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.37 E-value=79 Score=35.20 Aligned_cols=30 Identities=7% Similarity=0.245 Sum_probs=25.2
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 010871 233 DVTDFDFSSNNQYIASSSMDKTVRVWELTK 262 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 262 (498)
....++|+|.-.+++.+...|.|+++-...
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccc
Confidence 456788999999999999999999987543
No 491
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=79.20 E-value=50 Score=30.02 Aligned_cols=150 Identities=11% Similarity=0.034 Sum_probs=88.2
Q ss_pred cEEEEEEecCCCCEEEEEeCCC--cEEEEEcCCCCceeEEee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcE
Q 010871 189 AVTILKFGHMSSDLLAYGASDG--TLTVCTVSDPPKVIKLLN-GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDC 265 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg--~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 265 (498)
-.-.+.|.. ++.++-+.|.-| .|+.+|+.+ ++...... ...----.++...+ +...-.=.++...+||..+.+.
T Consensus 46 FTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLD-DGTLYESTGLYGQSSLRKVDLET-GKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTT-SSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecC-CCEEEEeCCCCCcEEEEEEECCC-CcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceE
Confidence 355678866 778888887766 688999998 55444332 11212223444422 2333344678899999999999
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee---cC---CCeEEEEEcCCCCEEEEEcCCCeEE
Q 010871 266 IRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV---VD---SEVTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 266 ~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~---~~i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
+.++.-...-..++. ++. .|+.......|+++|..+.+.+..+. .. ..++-+.+. +|...|-.-....|.
T Consensus 123 ~~~~~y~~EGWGLt~--dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 123 IGTFPYPGEGWGLTS--DGK-RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEE-SSS--EEEE--CSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEecCCcceEEEc--CCC-EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 999887766666663 344 45555556789999998888777764 12 235556664 455555444455555
Q ss_pred EEEccC
Q 010871 340 SISMES 345 (498)
Q Consensus 340 i~d~~~ 345 (498)
..|..+
T Consensus 199 ~Idp~t 204 (264)
T PF05096_consen 199 RIDPET 204 (264)
T ss_dssp EEETTT
T ss_pred EEeCCC
Confidence 555443
No 492
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=78.59 E-value=70 Score=31.38 Aligned_cols=232 Identities=9% Similarity=0.065 Sum_probs=94.7
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC----cEEEEEecC--------CCeEEEEEEcCCCcEEEEE--e----CCCcEEEEEc
Q 010871 242 NNQYIASSS-MDKTVRVWELTKG----DCIRVIYGV--------SSQLCIRFHPVNNNFLSVG--N----ANKEITVFNF 302 (498)
Q Consensus 242 ~~~~l~s~s-~dg~v~iwd~~~~----~~~~~~~~~--------~~v~~i~~~~~~~~~l~~g--~----~dg~i~iwd~ 302 (498)
+.++|+..+ ..+.|.|.|+.+. +..+++... .....+-..| ++.+++++ . .-|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcC
Confidence 346777766 6678999998833 445555431 1222444455 34555554 2 2356888888
Q ss_pred CCCcEEEEeecC----CCeEEEEEcCCCCEEEEEc--------------------CCCeEEEEEccCCcccccccccccc
Q 010871 303 STGRIIKKLVVD----SEVTSMDHDHTGQLLFCGD--------------------AQGCIYSISMESHSGALSRSHRHRT 358 (498)
Q Consensus 303 ~~~~~~~~~~~~----~~i~~l~~~~~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~~~~~~~ 358 (498)
++.+........ .--..+-|.|..+.+++.. ....+.+||+...+.......
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL---- 240 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL---- 240 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES----
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec----
Confidence 887777766432 2345666778878777762 245799999976554332211
Q ss_pred cCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccceeeEeEeeccCCc-------------eeeeEEEE
Q 010871 359 TGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYLTFRCSLKLAPR-------------VHSIRASF 424 (498)
Q Consensus 359 ~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 424 (498)
.........+.| ...|+..+=++++ -..+|-.|--. ..+....+........ ...+..-.
T Consensus 241 -g~~g~~pLEvRf---lH~P~~~~gFvg~aLss~i~~~~k~--~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 241 -GEEGQMPLEVRF---LHDPDANYGFVGCALSSSIWRFYKD--DDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp --TTEEEEEEEEE----SSTT--EEEEEEE--EEEEEEEE---ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred -CCCCCceEEEEe---cCCCCccceEEEEeccceEEEEEEc--CCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 111122333433 2234444433333 33334333221 1122222221111110 01111122
Q ss_pred eeeeeccCCCEEEEEeC-CCcEEEEECCCCCcc-ceeeec-C---------------CCCCeEEEEEcCCCCEEEEEe
Q 010871 425 CPLLSLEKGEYIVAGSE-DSNVYFYDLAKPKHS-CVNKLQ-G---------------HRFPVVAVAWNHGENLLASSD 484 (498)
Q Consensus 425 ~~~~~~~~~~~l~~gs~-dg~I~iwd~~~~~~~-~~~~~~-~---------------h~~~V~~l~~sp~~~~l~s~~ 484 (498)
+-+..+-|.++|..... +|.|+.||+...... ++.++. | -.+...-|..|-||+.|....
T Consensus 315 tDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 33334458888876654 799999999875421 111111 0 112346677888888776553
No 493
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=78.54 E-value=14 Score=31.27 Aligned_cols=30 Identities=23% Similarity=0.179 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCC------CEEEEEcCCCeEEEEEcc
Q 010871 315 SEVTSMDHDHTG------QLLFCGDAQGCIYSISME 344 (498)
Q Consensus 315 ~~i~~l~~~~~~------~~l~~~~~dg~i~i~d~~ 344 (498)
..+..++|+|.| -+|++.+.+|.|.+|.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378999999965 378899999999999643
No 494
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=78.28 E-value=1.1e+02 Score=33.46 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=84.7
Q ss_pred cEEEEEEecCCCC-EEEEEeC-----------CCcEEEEEcCCCCceeEEeec--CCCCeEEEEEccCCCEEEEEeCCCc
Q 010871 189 AVTILKFGHMSSD-LLAYGAS-----------DGTLTVCTVSDPPKVIKLLNG--HSKDVTDFDFSSNNQYIASSSMDKT 254 (498)
Q Consensus 189 ~V~~v~~sp~~~~-~lasg~~-----------dg~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~s~~~~~l~s~s~dg~ 254 (498)
.|..+.|+..+.. ++++|.. +|.++.|++-..++.+..+.. -.+.|.++ .|-..++++| ....
T Consensus 879 ~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai--~~f~~~~Lag-vG~~ 955 (1205)
T KOG1898|consen 879 SVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVGAI--CPFQGRVLAG-VGRF 955 (1205)
T ss_pred heeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccceEE--eccCCEEEEe-cccE
Confidence 4566667653333 4454432 355677776554443333321 22344444 4545455554 4568
Q ss_pred EEEEECCCCcEEEEEecCC---CeEEEEEEcCCCcEEEEEeCCCcEEE--EEcCCCcEEEEe--ecCCCeEEEEEcCCCC
Q 010871 255 VRVWELTKGDCIRVIYGVS---SQLCIRFHPVNNNFLSVGNANKEITV--FNFSTGRIIKKL--VVDSEVTSMDHDHTGQ 327 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~~g~~dg~i~i--wd~~~~~~~~~~--~~~~~i~~l~~~~~~~ 327 (498)
+++||+...+.++...... .+..+.+ ....+++|...-.+.+ |+-...+.+.-. ..+..|+++.+- |..
T Consensus 956 l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~ 1031 (1205)
T KOG1898|consen 956 LRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYD 1031 (1205)
T ss_pred EEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCC
Confidence 9999999887766554332 3444554 3456666655444444 444333333322 245667777664 456
Q ss_pred EEEEEcCCCeEEEEEccCC
Q 010871 328 LLFCGDAQGCIYSISMESH 346 (498)
Q Consensus 328 ~l~~~~~dg~i~i~d~~~~ 346 (498)
.++.++.-|.+.+..+...
T Consensus 1032 tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1032 TVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred ceeeccccCcEEEEECCCc
Confidence 7888999999888876543
No 495
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=78.19 E-value=58 Score=30.24 Aligned_cols=185 Identities=10% Similarity=0.078 Sum_probs=84.9
Q ss_pred cEEEEEcCCCcEEEEeec-------CCCeEEEEEcCCC-----CEEEEE-cCCCeEEEEEccCCcccccccccccccC--
Q 010871 296 EITVFNFSTGRIIKKLVV-------DSEVTSMDHDHTG-----QLLFCG-DAQGCIYSISMESHSGALSRSHRHRTTG-- 360 (498)
Q Consensus 296 ~i~iwd~~~~~~~~~~~~-------~~~i~~l~~~~~~-----~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~-- 360 (498)
.|.+||+.+++.++++.. .+.+..+.+.... .++..+ ...+-|.++|+.....-...........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688899999998888752 3567788887632 233333 3446788999876543222111100000
Q ss_pred ----------CCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeE---EEEeee
Q 010871 361 ----------KRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR---ASFCPL 427 (498)
Q Consensus 361 ----------~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 427 (498)
.....+..+...++ ++++++|+-....+ -++|.+.+.................+..+. .....+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~--~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~ 191 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPI--SPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM 191 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TT--STTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred cceeccCceEecCCCccccccCCC--CCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence 00011222222211 13555565554332 123333321000000000000000000000 011122
Q ss_pred eeccCCCEEEEEeCCCcEEEEECCCCC----ccceeeecCCCCCeEEEEEcC--CCCEEEEE
Q 010871 428 LSLEKGEYIVAGSEDSNVYFYDLAKPK----HSCVNKLQGHRFPVVAVAWNH--GENLLASS 483 (498)
Q Consensus 428 ~~~~~~~~l~~gs~dg~I~iwd~~~~~----~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~ 483 (498)
...++|.++++--..+.|..|+..+.- ...+..-...-..+.++.+.+ +|.+.+.+
T Consensus 192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 333588888888889999999998622 112221111135688999998 77765554
No 496
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=78.03 E-value=1.1e+02 Score=33.41 Aligned_cols=77 Identities=16% Similarity=0.341 Sum_probs=51.6
Q ss_pred CCeEEEEEEcCC-----CcEEEEEeCCCcEEEEEcCCCcEEEEee---cCCCeEEEEEcC---CC------CEEEEEcCC
Q 010871 273 SSQLCIRFHPVN-----NNFLSVGNANKEITVFNFSTGRIIKKLV---VDSEVTSMDHDH---TG------QLLFCGDAQ 335 (498)
Q Consensus 273 ~~v~~i~~~~~~-----~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~i~~l~~~~---~~------~~l~~~~~d 335 (498)
..+.|+++.++. .++++.++.|+.++++.+.....+..+. ...++.++.+-+ .+ -+|.+|-.+
T Consensus 583 ~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~N 662 (1205)
T KOG1898|consen 583 TDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRN 662 (1205)
T ss_pred eeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecccc
Confidence 356677776653 4679999999999999998777777663 334455544422 22 256788888
Q ss_pred CeEEEEEccCCccc
Q 010871 336 GCIYSISMESHSGA 349 (498)
Q Consensus 336 g~i~i~d~~~~~~~ 349 (498)
|.+.-+-++.-.+.
T Consensus 663 GvllR~~id~v~G~ 676 (1205)
T KOG1898|consen 663 GVLLRFVIDTVTGQ 676 (1205)
T ss_pred cEEEEEEecccccc
Confidence 88777766555443
No 497
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=77.51 E-value=63 Score=30.27 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=40.9
Q ss_pred CCEEEEEeCCCcEEEEECCCC-cEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC
Q 010871 243 NQYIASSSMDKTVRVWELTKG-DCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS 303 (498)
Q Consensus 243 ~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~ 303 (498)
+++|+.|+.+| +.+-++... .....+-....+.++...+..+-+++.++....++++++.
T Consensus 13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 13 GKWLLVGTEEG-LYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CcEEEEEeCCc-eEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 36899999998 555556542 3344455556888999888655555555555669999984
No 498
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=77.21 E-value=1.1e+02 Score=33.09 Aligned_cols=245 Identities=13% Similarity=0.076 Sum_probs=116.7
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCcE---------EEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC---C-
Q 010871 238 DFSSNNQYIASSSMDKTVRVWELTKGDC---------IRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS---T- 304 (498)
Q Consensus 238 ~~s~~~~~l~s~s~dg~v~iwd~~~~~~---------~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~---~- 304 (498)
.+-++...+++.+.+|.|+--++.+... ...++....+..+...... ..++..+..|.+...... .
T Consensus 491 dli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~-d~LllfTs~Grv~~l~~~~IP~~ 569 (800)
T TIGR01063 491 DLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTH-DYLLFFTNRGKVYWLKVYQIPEA 569 (800)
T ss_pred hccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCC-CeEEEEeCCCcEEEEEhhhCcCC
Confidence 3445566788899999998876543211 1112223334333333333 444445567776665432 1
Q ss_pred -----CcEE---EEeecCCC-eEEEEEc--CCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeE
Q 010871 305 -----GRII---KKLVVDSE-VTSMDHD--HTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRS 373 (498)
Q Consensus 305 -----~~~~---~~~~~~~~-i~~l~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 373 (498)
|..+ ..+..... +..+.+. .+...++..+.+|.++-.++...............+.. ...+..+...
T Consensus 570 ~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~- 647 (800)
T TIGR01063 570 SRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLT- 647 (800)
T ss_pred CcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEe-
Confidence 2222 11222333 3344432 34568899999999998877543211110000000111 2233322222
Q ss_pred eeEcCCCcEEEEEEcCCcEEEEEcccccc---ceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEEC
Q 010871 374 FSLLAGGPVLLTCTQDGNLSFFSVALEIQ---GYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDL 450 (498)
Q Consensus 374 ~~~s~~~~~l~t~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~ 450 (498)
.....++..+..|.+..+.+..-.. ...-.. ...+...-..+.+... .++.+++..+..|.++...+
T Consensus 648 ----~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~-~i~L~~~E~Vv~~~~v-----~~~~~ll~vT~~G~~Kr~~l 717 (800)
T TIGR01063 648 ----SGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR-GIKLKNEDFVVSLLVV-----SEESYLLIVTENGYGKRTSI 717 (800)
T ss_pred ----CCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee-cccCCCCCEEEEEEEe-----ccccEEEEEecCCcEEEEEH
Confidence 3445677778888877766542100 000000 0111111111111111 24557888888998888765
Q ss_pred CC-------CCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 451 AK-------PKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 451 ~~-------~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.. +++.....+....+.+..+....+...++..+.+|.+..+..+
T Consensus 718 ~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 718 EEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred HHccccCCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence 42 1111122233333444444444444445566677877666543
No 499
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=76.95 E-value=27 Score=36.16 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=58.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE
Q 010871 231 SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK 310 (498)
Q Consensus 231 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 310 (498)
...++++.-+|.++.+++++.||.|+++++.............+...+.|... -|++...|..+.-|.- .|-..+.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnh---gl~~~tsdrr~la~~~-dgvvqqq 89 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNH---GLVTATSDRRALAWKE-DGVVQQQ 89 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeecc---ceEEEeccchhheeec-cCcchhh
Confidence 34567888889999999999999999999876554332223334445566542 3566667777777763 3433333
Q ss_pred ee----cCCCeEEEEEcCCCC
Q 010871 311 LV----VDSEVTSMDHDHTGQ 327 (498)
Q Consensus 311 ~~----~~~~i~~l~~~~~~~ 327 (498)
+. ......++...|..+
T Consensus 90 fdyndqsekefss~~cdptaq 110 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQ 110 (1636)
T ss_pred ccccchhhhhccceecCchhh
Confidence 32 233455565666544
No 500
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=76.78 E-value=83 Score=33.42 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCC--CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 010871 209 DGTLTVCTVSDP--PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD 264 (498)
Q Consensus 209 dg~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 264 (498)
.|.+-+=|.+.. ++.+..+.+| .|.+++.+.+..+++| .+|.|.-|-++...
T Consensus 206 GGRlG~gdeq~~~iPkrV~gL~gh--~~~qisvs~~HslvLT--~~g~Vys~GlN~~h 259 (1267)
T KOG0783|consen 206 GGRLGFGDEQYNFIPKRVPGLIGH--KVIQISVSHTHSLVLT--KFGSVYSWGLNGSH 259 (1267)
T ss_pred CCccCcCccccccccccccccccc--ceEEEEeecceeEEEe--ecceEEEeecCccc
Confidence 444444444331 1223335555 5788888877655554 68899999877544
Done!