Query 010871
Match_columns 498
No_of_seqs 1006 out of 2571
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 16:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 5.9E-44 2E-48 351.2 39.4 291 182-495 103-410 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 8.7E-43 3E-47 334.2 43.1 286 180-493 48-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 1.2E-42 3.9E-47 330.3 40.1 289 181-495 26-320 (321)
4 4ery_A WD repeat-containing pr 100.0 1.3E-41 4.4E-46 322.0 44.2 292 180-495 16-311 (312)
5 3iz6_a 40S ribosomal protein R 100.0 2.8E-43 9.7E-48 342.9 30.2 298 180-497 59-376 (380)
6 3frx_A Guanine nucleotide-bind 100.0 1.2E-41 4.1E-46 323.2 40.5 292 179-498 9-319 (319)
7 2pbi_B Guanine nucleotide-bind 100.0 1.6E-41 5.4E-46 327.1 41.7 287 180-493 57-354 (354)
8 2ynn_A Coatomer subunit beta'; 100.0 3.4E-41 1.2E-45 317.9 41.0 292 179-496 5-302 (304)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.3E-41 1.5E-45 323.0 41.4 301 180-497 8-336 (345)
10 2xzm_R RACK1; ribosome, transl 100.0 1.1E-40 3.9E-45 319.9 40.7 292 180-497 14-341 (343)
11 1erj_A Transcriptional repress 100.0 1.3E-40 4.5E-45 325.6 41.4 296 185-496 62-389 (393)
12 1nr0_A Actin interacting prote 100.0 1.6E-40 5.6E-45 343.5 42.9 297 181-497 141-568 (611)
13 2hes_X YDR267CP; beta-propelle 100.0 8E-40 2.7E-44 312.2 41.5 296 180-497 7-329 (330)
14 4aow_A Guanine nucleotide-bind 100.0 1.5E-39 5.2E-44 311.2 40.1 292 179-498 30-339 (340)
15 4gqb_B Methylosome protein 50; 100.0 5.2E-40 1.8E-44 314.5 34.7 285 185-497 28-332 (344)
16 4g56_B MGC81050 protein; prote 100.0 6.8E-40 2.3E-44 316.0 35.6 286 184-496 39-343 (357)
17 1nr0_A Actin interacting prote 100.0 3.4E-39 1.2E-43 333.6 40.2 298 180-497 52-356 (611)
18 3k26_A Polycomb protein EED; W 100.0 9.4E-39 3.2E-43 308.7 39.1 311 171-496 2-366 (366)
19 3zwl_B Eukaryotic translation 100.0 1.7E-38 5.8E-43 307.1 39.8 288 181-496 26-346 (369)
20 4e54_B DNA damage-binding prot 100.0 2.2E-39 7.6E-44 321.3 32.0 298 181-497 113-431 (435)
21 3ei3_B DNA damage-binding prot 100.0 2.3E-38 8E-43 308.6 38.1 298 180-496 66-382 (383)
22 3dm0_A Maltose-binding peripla 100.0 5.7E-38 2E-42 329.7 41.6 289 180-496 375-693 (694)
23 2ynn_A Coatomer subunit beta'; 100.0 6.3E-38 2.2E-42 295.5 36.8 254 222-497 4-260 (304)
24 1sq9_A Antiviral protein SKI8; 100.0 5.8E-38 2E-42 307.1 34.8 291 178-498 7-397 (397)
25 4a11_B DNA excision repair pro 100.0 4E-37 1.4E-41 301.9 39.3 305 179-497 35-366 (408)
26 2ymu_A WD-40 repeat protein; u 100.0 4.7E-37 1.6E-41 315.9 40.3 279 181-493 297-577 (577)
27 3i2n_A WD repeat-containing pr 100.0 2.7E-37 9.4E-42 297.5 35.2 296 180-497 11-354 (357)
28 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-36 5.6E-41 293.9 38.4 295 182-496 3-361 (372)
29 1gxr_A ESG1, transducin-like e 100.0 2.3E-36 7.7E-41 288.6 38.4 281 183-494 47-335 (337)
30 1r5m_A SIR4-interacting protei 100.0 3E-36 1E-40 297.1 38.1 284 184-496 105-425 (425)
31 2ymu_A WD-40 repeat protein; u 100.0 8.4E-36 2.9E-40 306.6 41.4 281 181-495 256-538 (577)
32 4h5i_A Guanine nucleotide-exch 100.0 1E-36 3.5E-41 294.6 31.9 287 187-496 14-343 (365)
33 4gga_A P55CDC, cell division c 100.0 1.5E-35 5.1E-40 292.4 40.3 279 189-496 107-395 (420)
34 3odt_A Protein DOA1; ubiquitin 100.0 1.7E-35 5.7E-40 279.6 38.1 282 179-497 10-297 (313)
35 2pm9_A Protein WEB1, protein t 100.0 5.1E-37 1.7E-41 302.3 28.5 290 185-497 65-415 (416)
36 2pm7_B Protein transport prote 100.0 8E-36 2.7E-40 280.1 35.2 253 181-495 3-284 (297)
37 3dwl_C Actin-related protein 2 100.0 1.7E-37 5.7E-42 301.8 24.1 297 182-494 6-377 (377)
38 4ggc_A P55CDC, cell division c 100.0 2.5E-35 8.5E-40 279.2 38.0 279 190-497 28-316 (318)
39 3gre_A Serine/threonine-protei 100.0 1.6E-36 5.4E-41 301.1 30.6 299 183-493 59-437 (437)
40 4gqb_B Methylosome protein 50; 100.0 3.1E-35 1.1E-39 281.4 38.0 245 183-453 78-332 (344)
41 3f3f_A Nucleoporin SEH1; struc 100.0 5.1E-36 1.7E-40 287.0 31.8 293 180-497 4-338 (351)
42 3vl1_A 26S proteasome regulato 100.0 1.7E-35 6E-40 291.8 35.7 286 188-497 98-420 (420)
43 4aez_A CDC20, WD repeat-contai 100.0 1.4E-35 4.9E-40 290.7 34.4 282 185-497 89-381 (401)
44 3mmy_A MRNA export factor; mRN 100.0 2.1E-35 7.2E-40 285.3 33.8 299 181-494 33-344 (368)
45 1vyh_C Platelet-activating fac 100.0 1.8E-35 6.2E-40 290.7 33.0 254 223-497 100-370 (410)
46 3ow8_A WD repeat-containing pr 100.0 6.3E-35 2.2E-39 276.9 35.7 269 153-451 50-320 (321)
47 1yfq_A Cell cycle arrest prote 100.0 3.9E-35 1.3E-39 280.9 32.5 282 182-488 6-315 (342)
48 1r5m_A SIR4-interacting protei 100.0 1.6E-34 5.3E-39 284.9 36.8 282 184-496 42-361 (425)
49 3vl1_A 26S proteasome regulato 100.0 2.7E-35 9.3E-40 290.5 29.4 288 189-496 58-365 (420)
50 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-34 9.6E-39 321.0 40.9 295 181-495 609-912 (1249)
51 1gxr_A ESG1, transducin-like e 100.0 9.4E-35 3.2E-39 277.3 31.8 281 186-497 8-297 (337)
52 2pm9_A Protein WEB1, protein t 100.0 4.2E-36 1.4E-40 295.7 22.9 293 187-497 12-338 (416)
53 3v7d_B Cell division control p 100.0 1.6E-33 5.6E-38 281.6 41.2 282 180-497 114-422 (464)
54 3frx_A Guanine nucleotide-bind 100.0 4E-34 1.4E-38 271.4 34.1 274 153-452 32-317 (319)
55 3mkq_A Coatomer beta'-subunit; 100.0 5.9E-34 2E-38 304.8 39.5 290 179-496 5-302 (814)
56 2oaj_A Protein SNI1; WD40 repe 100.0 2.8E-34 9.6E-39 307.8 36.1 328 153-497 71-606 (902)
57 3dw8_B Serine/threonine-protei 100.0 2.6E-34 8.8E-39 285.8 33.3 289 185-494 26-444 (447)
58 3sfz_A APAF-1, apoptotic pepti 100.0 1E-33 3.5E-38 316.5 41.4 322 153-497 629-1035(1249)
59 1got_B GT-beta; complex (GTP-b 100.0 2.4E-33 8.2E-38 268.5 36.5 270 150-449 66-340 (340)
60 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-33 3.8E-38 280.4 34.9 274 184-497 130-415 (435)
61 3bg1_A Protein SEC13 homolog; 100.0 1.4E-34 4.9E-39 274.0 27.2 255 180-451 6-292 (316)
62 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-32 4.3E-37 273.7 42.3 299 154-497 132-443 (445)
63 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.4E-33 1.2E-37 268.0 36.7 287 153-454 30-337 (345)
64 2j04_B YDR362CP, TAU91; beta p 100.0 6.3E-35 2.2E-39 293.3 25.5 314 157-496 179-517 (524)
65 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-32 4.1E-37 273.8 41.7 275 181-497 112-392 (445)
66 1erj_A Transcriptional repress 100.0 2.5E-33 8.4E-38 274.0 36.0 254 186-452 122-389 (393)
67 3jrp_A Fusion protein of prote 100.0 1.6E-33 5.3E-38 273.4 33.9 267 180-495 4-286 (379)
68 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-33 5.1E-38 302.2 36.7 307 185-497 56-520 (902)
69 3v7d_B Cell division control p 100.0 3.5E-32 1.2E-36 271.9 41.4 300 153-494 134-461 (464)
70 4g56_B MGC81050 protein; prote 100.0 1.5E-33 5.1E-38 271.6 30.1 247 182-453 89-344 (357)
71 4ery_A WD repeat-containing pr 100.0 1.1E-32 3.9E-37 260.5 35.2 252 221-497 13-269 (312)
72 1pgu_A Actin interacting prote 100.0 9.2E-33 3.2E-37 285.9 37.3 293 181-496 197-614 (615)
73 1pgu_A Actin interacting prote 100.0 1.5E-32 5E-37 284.4 38.8 299 180-497 153-573 (615)
74 2xzm_R RACK1; ribosome, transl 100.0 1.3E-32 4.4E-37 263.8 35.5 280 151-452 39-340 (343)
75 2pbi_B Guanine nucleotide-bind 100.0 1.4E-32 4.8E-37 264.6 35.6 271 151-449 76-354 (354)
76 2hes_X YDR267CP; beta-propelle 100.0 2.2E-32 7.5E-37 260.7 34.8 281 154-452 27-328 (330)
77 3bg1_A Protein SEC13 homolog; 100.0 3.3E-33 1.1E-37 264.7 27.8 259 225-495 7-292 (316)
78 3iz6_a 40S ribosomal protein R 100.0 1.1E-33 3.7E-38 275.2 25.1 284 151-453 78-376 (380)
79 2aq5_A Coronin-1A; WD40 repeat 100.0 3.5E-33 1.2E-37 273.9 26.5 285 190-497 37-343 (402)
80 3dm0_A Maltose-binding peripla 100.0 7E-31 2.4E-35 275.7 36.2 280 152-451 396-692 (694)
81 3k26_A Polycomb protein EED; W 100.0 1.6E-31 5.4E-36 258.0 28.5 252 185-451 67-365 (366)
82 3jro_A Fusion protein of prote 100.0 6.7E-32 2.3E-36 285.3 28.1 257 181-496 3-285 (753)
83 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-30 4.2E-35 279.1 37.7 310 154-496 28-386 (814)
84 3vu4_A KMHSV2; beta-propeller 100.0 7.8E-31 2.7E-35 252.5 32.2 286 183-496 15-336 (355)
85 3ei3_B DNA damage-binding prot 100.0 1.2E-30 4.2E-35 254.0 32.9 279 153-452 88-382 (383)
86 2j04_B YDR362CP, TAU91; beta p 100.0 6.3E-32 2.1E-36 271.5 23.7 265 186-496 132-428 (524)
87 2xyi_A Probable histone-bindin 100.0 4.7E-31 1.6E-35 261.0 29.7 263 182-496 123-410 (430)
88 1sq9_A Antiviral protein SKI8; 100.0 4.3E-31 1.5E-35 258.3 28.9 274 154-453 29-396 (397)
89 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-30 7.5E-35 250.8 31.8 252 226-496 3-274 (372)
90 3i2n_A WD repeat-containing pr 100.0 1.6E-30 5.4E-35 250.2 30.2 255 184-453 62-354 (357)
91 3gre_A Serine/threonine-protei 100.0 1.9E-31 6.7E-36 264.4 23.9 274 195-497 35-360 (437)
92 4aow_A Guanine nucleotide-bind 100.0 1E-29 3.6E-34 242.8 34.0 278 153-454 53-339 (340)
93 3zwl_B Eukaryotic translation 100.0 3.1E-29 1E-33 242.1 37.6 257 222-497 23-305 (369)
94 1l0q_A Surface layer protein; 100.0 2.7E-29 9.2E-34 245.1 36.9 267 201-497 3-276 (391)
95 4gq1_A NUP37; propeller, trans 100.0 2E-31 6.9E-36 260.3 21.4 261 185-494 87-387 (393)
96 3dw8_B Serine/threonine-protei 100.0 5.2E-31 1.8E-35 261.9 24.8 256 229-497 26-374 (447)
97 3odt_A Protein DOA1; ubiquitin 100.0 2.4E-29 8.3E-34 237.2 34.9 249 216-497 3-256 (313)
98 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-29 5.7E-34 251.5 34.4 291 187-496 4-391 (450)
99 3bws_A Protein LP49; two-domai 100.0 1.1E-29 3.8E-34 251.3 33.0 279 188-496 123-432 (433)
100 1yfq_A Cell cycle arrest prote 100.0 1.2E-29 4.2E-34 242.6 30.9 253 226-497 6-283 (342)
101 3dwl_C Actin-related protein 2 100.0 4.8E-31 1.7E-35 256.2 21.0 254 226-495 6-280 (377)
102 4aez_A CDC20, WD repeat-contai 100.0 6.9E-29 2.3E-33 243.2 35.4 268 155-454 107-382 (401)
103 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-30 5.6E-35 255.1 23.3 244 185-485 83-350 (588)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-29 5.2E-34 248.0 29.9 254 181-455 75-345 (402)
105 3mmy_A MRNA export factor; mRN 100.0 2.8E-29 9.5E-34 242.3 29.9 252 221-497 29-305 (368)
106 4e54_B DNA damage-binding prot 100.0 3.3E-30 1.1E-34 255.4 23.9 280 153-454 134-432 (435)
107 2j04_A TAU60, YPL007P, hypothe 100.0 2.2E-30 7.6E-35 254.2 22.0 270 187-495 15-296 (588)
108 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-29 4.4E-34 242.9 26.3 269 195-495 44-332 (343)
109 4a11_B DNA excision repair pro 100.0 2.5E-28 8.5E-33 239.2 35.5 287 184-495 96-404 (408)
110 2pm7_B Protein transport prote 100.0 2.3E-28 7.9E-33 229.2 30.7 236 152-398 22-284 (297)
111 1l0q_A Surface layer protein; 100.0 1.7E-27 5.9E-32 232.3 36.7 285 182-497 27-343 (391)
112 4h5i_A Guanine nucleotide-exch 100.0 4.6E-28 1.6E-32 233.9 31.0 249 182-453 68-344 (365)
113 4gga_A P55CDC, cell division c 100.0 8.8E-28 3E-32 236.8 33.5 279 160-473 124-414 (420)
114 3vu4_A KMHSV2; beta-propeller 100.0 5.3E-28 1.8E-32 232.7 30.3 253 214-497 3-272 (355)
115 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-27 5.3E-32 236.2 32.6 261 154-454 146-416 (435)
116 2w18_A PALB2, fancn, partner a 100.0 3.8E-27 1.3E-31 217.5 29.6 256 186-495 38-356 (356)
117 3jrp_A Fusion protein of prote 100.0 8.8E-27 3E-31 225.8 32.3 235 153-400 25-288 (379)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2E-26 6.7E-31 229.3 31.4 241 232-494 5-337 (450)
119 4ggc_A P55CDC, cell division c 100.0 1.2E-25 4.2E-30 212.3 34.2 260 160-452 44-315 (318)
120 3f3f_A Nucleoporin SEH1; struc 100.0 3.8E-26 1.3E-30 218.2 28.6 277 153-454 25-339 (351)
121 3lrv_A PRE-mRNA-splicing facto 100.0 5.1E-27 1.8E-31 224.8 22.5 232 238-497 43-293 (343)
122 3jro_A Fusion protein of prote 99.9 1.3E-26 4.5E-31 244.9 24.9 234 154-400 24-286 (753)
123 2xyi_A Probable histone-bindin 99.9 1.8E-25 6.2E-30 220.9 27.2 215 180-400 174-411 (430)
124 1nir_A Nitrite reductase; hemo 99.9 7.8E-25 2.7E-29 221.6 32.1 281 194-497 144-459 (543)
125 3bws_A Protein LP49; two-domai 99.9 1.2E-24 4.2E-29 215.0 31.6 273 151-452 134-432 (433)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.4E-25 2.5E-29 215.1 27.9 278 188-497 63-388 (415)
127 2w18_A PALB2, fancn, partner a 99.9 2.9E-25 1E-29 204.9 23.3 176 208-397 155-355 (356)
128 1nir_A Nitrite reductase; hemo 99.9 3.8E-24 1.3E-28 216.6 33.1 290 190-497 181-515 (543)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.7E-24 9.4E-29 211.0 28.7 266 182-478 112-410 (415)
130 1ri6_A Putative isomerase YBHE 99.9 1.9E-23 6.4E-28 199.4 32.5 282 202-495 7-307 (343)
131 3u4y_A Uncharacterized protein 99.9 4.3E-23 1.5E-27 196.3 30.6 284 194-497 4-305 (331)
132 4gq1_A NUP37; propeller, trans 99.9 1E-24 3.5E-29 212.8 19.7 233 151-398 101-388 (393)
133 2ojh_A Uncharacterized protein 99.9 1.8E-22 6.1E-27 188.1 25.7 257 205-487 17-293 (297)
134 3vgz_A Uncharacterized protein 99.9 4.1E-21 1.4E-25 184.1 35.6 273 187-486 40-334 (353)
135 2ecf_A Dipeptidyl peptidase IV 99.9 2.1E-22 7.1E-27 213.1 28.8 282 187-495 36-412 (741)
136 1ri6_A Putative isomerase YBHE 99.9 1.6E-21 5.4E-26 186.0 30.6 278 185-478 35-335 (343)
137 1pby_B Quinohemoprotein amine 99.9 1.3E-21 4.3E-26 186.2 27.4 265 201-497 2-311 (337)
138 3hfq_A Uncharacterized protein 99.9 4.3E-20 1.5E-24 176.8 34.1 273 209-495 15-316 (347)
139 2z3z_A Dipeptidyl aminopeptida 99.9 4.8E-21 1.6E-25 201.5 29.2 280 188-497 82-436 (706)
140 3o4h_A Acylamino-acid-releasin 99.9 2.5E-21 8.6E-26 198.9 25.8 276 187-495 21-314 (582)
141 1xfd_A DIP, dipeptidyl aminope 99.9 3.9E-21 1.3E-25 202.8 23.6 288 189-496 18-393 (723)
142 3u4y_A Uncharacterized protein 99.9 2.1E-19 7.2E-24 170.7 32.9 251 185-454 38-306 (331)
143 1k32_A Tricorn protease; prote 99.9 3E-20 1E-24 203.5 29.6 280 181-495 197-501 (1045)
144 2oit_A Nucleoporin 214KDA; NH2 99.9 9.1E-20 3.1E-24 179.5 29.2 205 188-400 37-279 (434)
145 2ecf_A Dipeptidyl peptidase IV 99.9 2.8E-20 9.7E-25 196.7 26.4 282 188-496 109-459 (741)
146 3scy_A Hypothetical bacterial 99.9 1.2E-18 4E-23 167.8 35.5 280 201-495 14-336 (361)
147 1jmx_B Amine dehydrogenase; ox 99.9 1.1E-19 3.9E-24 173.6 28.0 274 192-497 4-326 (349)
148 2z3z_A Dipeptidyl aminopeptida 99.9 7.9E-20 2.7E-24 192.2 28.4 281 190-497 28-392 (706)
149 3pe7_A Oligogalacturonate lyas 99.9 3.8E-19 1.3E-23 172.9 28.3 285 182-495 25-381 (388)
150 2ojh_A Uncharacterized protein 99.9 2.1E-19 7.1E-24 167.2 25.4 239 182-443 36-293 (297)
151 1k32_A Tricorn protease; prote 99.9 7.8E-20 2.7E-24 200.3 26.0 285 186-497 294-638 (1045)
152 3vgz_A Uncharacterized protein 99.8 2E-18 7E-23 165.2 30.9 244 230-497 39-304 (353)
153 1jof_A Carboxy-CIS,CIS-muconat 99.8 8.7E-19 3E-23 169.0 28.3 281 202-496 4-341 (365)
154 3hfq_A Uncharacterized protein 99.8 4.1E-18 1.4E-22 163.0 32.0 251 185-451 37-316 (347)
155 3scy_A Hypothetical bacterial 99.8 7E-18 2.4E-22 162.3 32.5 271 186-474 48-360 (361)
156 1xfd_A DIP, dipeptidyl aminope 99.8 4E-19 1.4E-23 187.4 24.7 281 182-484 52-428 (723)
157 1pby_B Quinohemoprotein amine 99.8 7.2E-19 2.5E-23 167.1 21.5 244 189-464 35-320 (337)
158 1z68_A Fibroblast activation p 99.8 8.7E-19 3E-23 184.7 22.0 285 192-495 20-390 (719)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 1.3E-17 4.6E-22 164.0 27.2 160 185-347 90-280 (434)
160 2oiz_A Aromatic amine dehydrog 99.8 1E-16 3.4E-21 154.0 29.3 271 208-497 29-335 (361)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.6E-16 5.6E-21 153.0 29.7 254 187-453 39-342 (365)
162 3c5m_A Oligogalacturonate lyas 99.8 1.4E-17 4.9E-22 162.0 21.1 275 189-494 37-380 (396)
163 3o4h_A Acylamino-acid-releasin 99.8 4.7E-18 1.6E-22 174.5 17.9 232 230-494 20-274 (582)
164 2oiz_A Aromatic amine dehydrog 99.8 3.6E-16 1.2E-20 150.1 26.3 273 184-478 48-360 (361)
165 1jmx_B Amine dehydrogenase; ox 99.7 4.2E-16 1.4E-20 148.7 25.2 232 189-463 44-334 (349)
166 4a5s_A Dipeptidyl peptidase 4 99.7 1.9E-16 6.5E-21 167.1 23.9 286 189-494 18-396 (740)
167 3fvz_A Peptidyl-glycine alpha- 99.7 3.4E-15 1.2E-19 141.5 29.3 248 187-496 23-322 (329)
168 1q7f_A NHL, brain tumor CG1071 99.7 8E-15 2.7E-19 136.0 30.7 240 229-496 27-280 (286)
169 3azo_A Aminopeptidase; POP fam 99.7 8.4E-16 2.9E-20 160.3 24.0 291 182-497 18-370 (662)
170 1z68_A Fibroblast activation p 99.7 1.9E-16 6.4E-21 166.8 18.4 246 235-496 19-346 (719)
171 2dg1_A DRP35, lactonase; beta 99.7 5.9E-15 2E-19 140.1 26.4 272 188-486 6-300 (333)
172 4a5s_A Dipeptidyl peptidase 4 99.7 2.5E-15 8.6E-20 158.5 23.9 251 232-497 17-354 (740)
173 2gop_A Trilobed protease; beta 99.7 1.7E-14 5.7E-19 137.7 27.5 258 189-495 16-330 (347)
174 1q7f_A NHL, brain tumor CG1071 99.7 6.7E-14 2.3E-18 129.7 30.7 241 184-452 26-280 (286)
175 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-13 4.8E-18 138.9 34.6 276 199-496 166-477 (567)
176 3pe7_A Oligogalacturonate lyas 99.7 4.3E-15 1.5E-19 144.1 21.9 258 215-497 15-330 (388)
177 3dsm_A Uncharacterized protein 99.7 1.5E-13 5.3E-18 129.9 30.0 258 208-495 15-301 (328)
178 2z2n_A Virginiamycin B lyase; 99.6 2.7E-12 9.2E-17 119.3 37.2 281 184-497 11-296 (299)
179 1qks_A Cytochrome CD1 nitrite 99.6 7E-13 2.4E-17 133.8 34.2 292 189-497 198-539 (567)
180 3azo_A Aminopeptidase; POP fam 99.6 2.9E-14 1E-18 148.5 23.0 201 192-398 81-322 (662)
181 3e5z_A Putative gluconolactona 99.6 8.8E-13 3E-17 122.8 29.9 238 184-495 24-285 (296)
182 2xdw_A Prolyl endopeptidase; a 99.6 5.7E-13 1.9E-17 139.9 30.4 246 230-497 123-415 (710)
183 2mad_H Methylamine dehydrogena 99.6 1E-11 3.5E-16 119.2 36.2 278 199-497 31-351 (373)
184 3c5m_A Oligogalacturonate lyas 99.6 1.8E-14 6.2E-19 139.9 17.1 253 215-497 15-330 (396)
185 2bkl_A Prolyl endopeptidase; m 99.6 9.1E-14 3.1E-18 145.5 22.7 274 197-497 77-398 (695)
186 3sjl_D Methylamine dehydrogena 99.6 1.2E-12 4E-17 124.2 27.3 284 195-497 40-364 (386)
187 2dg1_A DRP35, lactonase; beta 99.6 7.1E-12 2.4E-16 118.7 32.5 208 182-398 39-262 (333)
188 3no2_A Uncharacterized protein 99.6 1.5E-12 5.1E-17 119.6 25.1 216 242-484 4-231 (276)
189 3dsm_A Uncharacterized protein 99.5 4.5E-12 1.5E-16 119.8 27.1 254 189-473 45-319 (328)
190 2qc5_A Streptogramin B lactona 99.5 1E-10 3.6E-15 108.5 35.4 276 187-495 19-299 (300)
191 2gop_A Trilobed protease; beta 99.5 7.8E-12 2.7E-16 119.1 27.8 236 188-467 59-342 (347)
192 2bkl_A Prolyl endopeptidase; m 99.5 6.6E-13 2.3E-17 139.0 21.2 248 184-455 117-400 (695)
193 2xdw_A Prolyl endopeptidase; a 99.5 7.8E-12 2.7E-16 131.2 29.4 246 185-454 122-416 (710)
194 1rwi_B Serine/threonine-protei 99.5 5.7E-12 1.9E-16 115.4 24.9 237 233-496 25-264 (270)
195 3no2_A Uncharacterized protein 99.5 7.3E-12 2.5E-16 115.0 24.9 182 199-400 4-196 (276)
196 3c75_H MADH, methylamine dehyd 99.5 1.2E-11 4.1E-16 119.4 26.8 282 199-497 83-403 (426)
197 1yr2_A Prolyl oligopeptidase; 99.5 5.2E-12 1.8E-16 133.1 26.1 275 197-497 116-442 (741)
198 3fvz_A Peptidyl-glycine alpha- 99.5 5.4E-12 1.8E-16 119.4 23.4 204 185-399 88-322 (329)
199 1rwi_B Serine/threonine-protei 99.5 6.7E-12 2.3E-16 115.0 22.5 238 189-453 25-265 (270)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 6.5E-11 2.2E-15 110.9 29.2 243 187-496 17-299 (314)
201 2mad_H Methylamine dehydrogena 99.5 2.4E-10 8.1E-15 109.7 32.1 248 192-460 70-356 (373)
202 1xip_A Nucleoporin NUP159; bet 99.4 2.4E-12 8.3E-17 122.6 17.6 179 189-387 39-232 (388)
203 2z2n_A Virginiamycin B lyase; 99.4 9E-10 3.1E-14 102.1 32.4 239 228-495 11-254 (299)
204 3hrp_A Uncharacterized protein 99.4 2.9E-10 1E-14 110.6 29.3 247 232-495 131-409 (409)
205 3sjl_D Methylamine dehydrogena 99.4 7.4E-11 2.5E-15 111.9 23.7 258 193-476 83-384 (386)
206 3g4e_A Regucalcin; six bladed 99.4 2.8E-09 9.7E-14 99.0 32.6 232 187-484 12-260 (297)
207 2qe8_A Uncharacterized protein 99.4 2.7E-11 9.2E-16 115.3 18.5 263 188-488 17-313 (343)
208 3c75_H MADH, methylamine dehyd 99.3 1.9E-10 6.5E-15 111.1 22.8 251 192-461 122-409 (426)
209 1yr2_A Prolyl oligopeptidase; 99.3 1.7E-10 5.8E-15 121.6 24.6 245 185-454 160-443 (741)
210 1mda_H Methylamine dehydrogena 99.3 1.6E-10 5.4E-15 109.8 21.2 260 211-497 47-347 (368)
211 2ghs_A AGR_C_1268P; regucalcin 99.3 1.9E-08 6.3E-13 94.8 33.6 148 189-344 50-209 (326)
212 3hrp_A Uncharacterized protein 99.3 1.4E-09 4.8E-14 105.8 26.2 245 188-450 131-408 (409)
213 3q7m_A Lipoprotein YFGL, BAMB; 99.3 4.3E-09 1.5E-13 101.3 28.8 269 200-497 53-338 (376)
214 3e5z_A Putative gluconolactona 99.3 1.4E-09 4.7E-14 101.0 23.6 199 273-496 28-246 (296)
215 3dr2_A Exported gluconolactona 99.3 6.3E-09 2.2E-13 97.0 27.9 236 223-490 36-301 (305)
216 2qc5_A Streptogramin B lactona 99.3 3.8E-08 1.3E-12 91.1 32.9 236 230-495 18-259 (300)
217 1yiq_A Quinohemoprotein alcoho 99.2 2.4E-09 8.1E-14 111.2 25.9 282 200-498 70-507 (689)
218 3iuj_A Prolyl endopeptidase; h 99.2 2E-09 6.9E-14 112.4 23.9 241 229-497 126-406 (693)
219 1kb0_A Quinohemoprotein alcoho 99.2 3.2E-09 1.1E-13 110.0 24.7 284 200-498 77-509 (677)
220 1xip_A Nucleoporin NUP159; bet 99.2 6.8E-10 2.3E-14 105.7 17.8 133 185-331 86-230 (388)
221 3iuj_A Prolyl endopeptidase; h 99.2 2.9E-09 9.8E-14 111.2 24.0 242 185-455 126-408 (693)
222 3q7m_A Lipoprotein YFGL, BAMB; 99.2 2.2E-08 7.5E-13 96.3 27.8 258 199-494 102-376 (376)
223 3dr2_A Exported gluconolactona 99.2 2.1E-08 7E-13 93.5 26.5 231 187-449 44-303 (305)
224 1kb0_A Quinohemoprotein alcoho 99.1 1.7E-08 5.7E-13 104.6 26.4 266 200-482 128-536 (677)
225 1mda_H Methylamine dehydrogena 99.1 8.2E-10 2.8E-14 104.9 15.3 256 192-475 69-366 (368)
226 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 2.6E-08 8.7E-13 93.0 24.0 197 186-399 69-299 (314)
227 1yiq_A Quinohemoprotein alcoho 99.1 6.1E-08 2.1E-12 100.6 27.9 266 200-481 121-533 (689)
228 2ece_A 462AA long hypothetical 99.0 1.1E-07 3.9E-12 90.7 25.2 196 197-400 93-353 (462)
229 3g4e_A Regucalcin; six bladed 99.0 3E-07 1E-11 85.2 26.3 201 275-497 15-230 (297)
230 2hz6_A Endoplasmic reticulum t 99.0 1.2E-10 4.3E-15 111.7 2.8 180 199-400 8-193 (369)
231 1npe_A Nidogen, entactin; glyc 99.0 2.7E-06 9.1E-11 77.4 31.3 249 202-478 3-263 (267)
232 2ece_A 462AA long hypothetical 98.9 2.2E-06 7.4E-11 82.0 30.3 231 241-484 93-399 (462)
233 2hz6_A Endoplasmic reticulum t 98.9 2.3E-09 7.9E-14 102.8 8.1 202 242-478 8-216 (369)
234 1kv9_A Type II quinohemoprotei 98.9 3.4E-07 1.2E-11 94.7 24.0 284 200-497 66-489 (668)
235 1fwx_A Nitrous oxide reductase 98.8 4.8E-07 1.6E-11 89.5 22.6 255 199-461 100-440 (595)
236 2ghs_A AGR_C_1268P; regucalcin 98.8 1.7E-06 5.7E-11 81.3 25.7 198 275-495 51-259 (326)
237 2ad6_A Methanol dehydrogenase 98.8 1.6E-06 5.4E-11 87.9 25.2 281 200-498 62-496 (571)
238 1w6s_A Methanol dehydrogenase 98.8 1.9E-06 6.4E-11 87.3 25.3 193 200-401 62-344 (599)
239 2qe8_A Uncharacterized protein 98.8 3.8E-07 1.3E-11 86.4 19.2 193 185-398 64-277 (343)
240 3nol_A Glutamine cyclotransfer 98.8 3E-06 1E-10 75.1 22.9 119 223-345 33-155 (262)
241 2iwa_A Glutamine cyclotransfer 98.8 1.7E-06 5.9E-11 77.5 21.5 206 223-452 11-237 (266)
242 1k3i_A Galactose oxidase precu 98.7 6.3E-07 2.2E-11 92.8 19.4 277 192-485 190-530 (656)
243 2iwa_A Glutamine cyclotransfer 98.7 2.5E-05 8.6E-10 70.0 26.8 198 189-399 22-237 (266)
244 1kv9_A Type II quinohemoprotei 98.7 6.6E-06 2.2E-10 85.1 26.4 145 200-347 117-335 (668)
245 3mbr_X Glutamine cyclotransfer 98.7 1.3E-05 4.5E-10 70.3 24.1 120 222-345 10-133 (243)
246 3hxj_A Pyrrolo-quinoline quino 98.7 8.2E-07 2.8E-11 83.3 17.7 262 188-495 60-323 (330)
247 2p4o_A Hypothetical protein; p 98.7 0.0001 3.5E-09 68.3 31.6 242 223-485 24-277 (306)
248 4a2l_A BT_4663, two-component 98.7 6.9E-05 2.4E-09 79.4 34.2 286 187-496 214-526 (795)
249 3nok_A Glutaminyl cyclase; bet 98.6 5.7E-06 1.9E-10 73.3 20.9 118 223-345 45-164 (268)
250 4a2l_A BT_4663, two-component 98.6 0.00018 6.1E-09 76.2 36.6 286 190-496 175-480 (795)
251 2fp8_A Strictosidine synthase; 98.6 3.7E-05 1.3E-09 71.8 27.6 237 189-452 20-313 (322)
252 1flg_A Protein (quinoprotein e 98.6 2.9E-05 9.9E-10 78.7 28.5 109 201-312 69-201 (582)
253 1fwx_A Nitrous oxide reductase 98.6 5.5E-07 1.9E-11 89.1 15.1 155 188-345 134-361 (595)
254 2ad6_A Methanol dehydrogenase 98.6 1.3E-05 4.6E-10 81.1 25.7 144 200-347 115-337 (571)
255 1w6s_A Methanol dehydrogenase 98.6 6.4E-05 2.2E-09 76.1 29.8 141 203-347 124-344 (599)
256 2fp8_A Strictosidine synthase; 98.6 4.2E-05 1.4E-09 71.5 25.9 236 232-496 19-313 (322)
257 3hxj_A Pyrrolo-quinoline quino 98.6 7.5E-07 2.6E-11 83.6 13.6 251 200-494 30-282 (330)
258 1flg_A Protein (quinoprotein e 98.5 0.00012 4E-09 74.3 29.9 146 200-347 117-357 (582)
259 3nol_A Glutamine cyclotransfer 98.5 9.4E-05 3.2E-09 65.5 24.9 188 189-389 44-245 (262)
260 1npe_A Nidogen, entactin; glyc 98.5 0.00014 4.9E-09 65.7 27.3 196 188-400 36-239 (267)
261 3nok_A Glutaminyl cyclase; bet 98.5 1.7E-05 5.7E-10 70.3 19.8 149 189-347 56-212 (268)
262 3qqz_A Putative uncharacterize 98.4 0.00046 1.6E-08 61.3 27.0 211 273-495 27-252 (255)
263 3mbr_X Glutamine cyclotransfer 98.4 0.00073 2.5E-08 59.2 26.9 188 188-388 21-223 (243)
264 3tc9_A Hypothetical hydrolase; 98.4 0.00016 5.4E-09 70.5 24.8 248 233-496 138-430 (430)
265 1ijq_A LDL receptor, low-densi 98.3 0.0014 4.7E-08 60.9 29.9 227 245-496 3-238 (316)
266 3kya_A Putative phosphatase; s 98.3 0.00041 1.4E-08 67.8 27.0 156 189-345 140-341 (496)
267 4hw6_A Hypothetical protein, I 98.3 0.00035 1.2E-08 68.0 26.7 156 189-346 140-305 (433)
268 3v9f_A Two-component system se 98.3 0.0019 6.4E-08 68.2 33.9 281 188-496 163-478 (781)
269 3v64_C Agrin; beta propeller, 98.3 0.0025 8.7E-08 60.0 30.2 234 234-494 36-273 (349)
270 2xzh_A Clathrin heavy chain 1; 98.3 0.0025 8.5E-08 57.8 31.0 262 209-496 48-332 (365)
271 3v9f_A Two-component system se 98.2 0.0083 2.8E-07 63.2 38.0 289 188-495 66-391 (781)
272 3tc9_A Hypothetical hydrolase; 98.2 0.00044 1.5E-08 67.3 25.0 154 189-346 138-302 (430)
273 3amr_A 3-phytase; beta-propell 98.2 0.00038 1.3E-08 64.3 22.2 192 199-398 39-262 (355)
274 2p4o_A Hypothetical protein; p 98.2 0.0029 9.9E-08 58.3 28.8 194 188-398 32-241 (306)
275 3v65_B Low-density lipoprotein 98.2 0.003 1E-07 60.5 29.4 233 235-494 80-316 (386)
276 3v64_C Agrin; beta propeller, 98.2 0.0053 1.8E-07 57.7 30.8 237 188-453 34-276 (349)
277 3qqz_A Putative uncharacterize 98.1 0.0039 1.3E-07 55.3 27.9 216 172-396 11-250 (255)
278 3v65_B Low-density lipoprotein 98.1 0.0034 1.2E-07 60.0 28.4 236 190-454 79-320 (386)
279 3p5b_L Low density lipoprotein 98.1 0.0056 1.9E-07 58.8 29.8 227 245-496 85-320 (400)
280 1k3i_A Galactose oxidase precu 98.1 0.00014 4.7E-09 75.2 19.0 243 236-496 190-497 (656)
281 2xe4_A Oligopeptidase B; hydro 98.1 0.00047 1.6E-08 72.3 23.1 112 233-346 175-305 (751)
282 3sov_A LRP-6, low-density lipo 98.1 0.0072 2.4E-07 56.0 28.7 222 209-454 12-240 (318)
283 2xe4_A Oligopeptidase B; hydro 98.0 0.00048 1.6E-08 72.3 20.9 152 189-344 175-353 (751)
284 1ijq_A LDL receptor, low-densi 97.9 0.014 4.9E-07 53.9 33.1 221 210-454 10-240 (316)
285 3sov_A LRP-6, low-density lipo 97.9 0.0087 3E-07 55.4 25.5 199 189-400 36-239 (318)
286 2p9w_A MAL S 1 allergenic prot 97.9 0.0035 1.2E-07 57.4 21.9 152 191-344 16-214 (334)
287 3m0c_C LDL receptor, low-densi 97.9 0.04 1.4E-06 57.6 32.4 228 202-454 397-634 (791)
288 3p5b_L Low density lipoprotein 97.8 0.025 8.5E-07 54.2 34.0 229 201-454 84-322 (400)
289 2p9w_A MAL S 1 allergenic prot 97.8 0.0098 3.4E-07 54.5 23.4 162 229-398 10-214 (334)
290 3amr_A 3-phytase; beta-propell 97.8 0.0077 2.6E-07 55.7 22.6 199 285-495 40-262 (355)
291 3m0c_C LDL receptor, low-densi 97.8 0.035 1.2E-06 58.0 29.7 227 245-495 397-631 (791)
292 3s94_A LRP-6, low-density lipo 97.7 0.052 1.8E-06 55.2 32.3 159 188-346 40-203 (619)
293 1bpo_A Protein (clathrin); cla 97.7 0.034 1.2E-06 52.6 34.0 262 209-496 47-331 (494)
294 2xzh_A Clathrin heavy chain 1; 97.7 0.027 9.3E-07 51.1 25.3 221 253-498 49-292 (365)
295 2vpj_A Kelch-like protein 12; 97.7 0.0037 1.3E-07 57.4 19.3 226 243-497 15-279 (301)
296 2vpj_A Kelch-like protein 12; 97.6 0.0072 2.5E-07 55.4 20.2 231 199-459 14-285 (301)
297 2xn4_A Kelch-like protein 2; s 97.6 0.0075 2.6E-07 55.3 20.1 225 244-497 17-277 (302)
298 3ii7_A Kelch-like protein 7; p 97.6 0.0097 3.3E-07 54.7 20.9 224 245-497 14-273 (306)
299 3ii7_A Kelch-like protein 7; p 97.6 0.019 6.6E-07 52.6 22.6 233 200-462 12-282 (306)
300 3ei3_A DNA damage-binding prot 97.5 0.16 5.6E-06 55.4 36.5 155 187-345 553-724 (1158)
301 4hw6_A Hypothetical protein, I 97.5 0.019 6.4E-07 55.8 21.8 199 274-494 140-372 (433)
302 4asc_A Kelch repeat and BTB do 97.5 0.058 2E-06 49.6 24.4 229 202-458 7-283 (315)
303 1bpo_A Protein (clathrin); cla 97.5 0.052 1.8E-06 51.4 23.2 221 253-498 48-291 (494)
304 4a0p_A LRP6, LRP-6, low-densit 97.4 0.13 4.5E-06 52.3 31.6 225 202-454 8-239 (628)
305 2xbg_A YCF48-like protein; pho 97.4 0.078 2.7E-06 49.2 33.4 270 187-493 35-319 (327)
306 3s94_A LRP-6, low-density lipo 97.4 0.15 5.2E-06 51.8 33.8 297 188-496 84-423 (619)
307 2xn4_A Kelch-like protein 2; s 97.4 0.04 1.4E-06 50.3 21.8 227 200-456 16-280 (302)
308 1n7d_A LDL receptor, low-densi 97.3 0.0018 6.1E-08 67.1 12.8 222 209-454 385-616 (699)
309 1zgk_A Kelch-like ECH-associat 97.3 0.02 7E-07 52.6 18.6 227 242-497 24-288 (308)
310 1zgk_A Kelch-like ECH-associat 97.3 0.046 1.6E-06 50.2 20.8 231 199-460 24-295 (308)
311 4a0p_A LRP6, LRP-6, low-densit 97.3 0.22 7.5E-06 50.7 36.9 198 188-400 37-238 (628)
312 4asc_A Kelch repeat and BTB do 97.2 0.11 3.9E-06 47.7 23.0 223 245-497 7-278 (315)
313 3ei3_A DNA damage-binding prot 97.2 0.39 1.3E-05 52.5 32.9 280 190-496 276-591 (1158)
314 2xbg_A YCF48-like protein; pho 97.2 0.12 4.1E-06 47.8 22.9 190 188-396 122-319 (327)
315 1n7d_A LDL receptor, low-densi 97.2 0.00078 2.7E-08 69.8 8.3 221 252-495 385-613 (699)
316 2ism_A Putative oxidoreductase 97.1 0.2 6.8E-06 46.9 28.5 99 231-332 30-152 (352)
317 2woz_A Kelch repeat and BTB do 97.0 0.1 3.4E-06 48.1 20.4 220 212-457 26-292 (318)
318 1xi4_A Clathrin heavy chain; a 97.0 0.092 3.1E-06 57.3 21.9 260 209-493 47-328 (1630)
319 2be1_A Serine/threonine-protei 97.0 0.02 6.7E-07 53.1 14.9 106 244-349 11-134 (339)
320 2be1_A Serine/threonine-protei 96.9 0.05 1.7E-06 50.4 17.0 141 201-342 11-181 (339)
321 2uvk_A YJHT; unknown function, 96.9 0.062 2.1E-06 50.4 18.4 144 199-347 19-228 (357)
322 3a9g_A Putative uncharacterize 96.8 0.34 1.2E-05 45.4 27.8 101 231-333 28-153 (354)
323 2woz_A Kelch repeat and BTB do 96.7 0.25 8.7E-06 45.3 20.7 218 254-497 25-288 (318)
324 3kya_A Putative phosphatase; s 96.7 0.46 1.6E-05 46.4 22.5 255 233-496 140-475 (496)
325 3sre_A PON1, serum paraoxonase 96.6 0.23 7.8E-06 46.4 19.6 166 316-496 51-252 (355)
326 3pbp_A Nucleoporin NUP82; beta 96.6 0.22 7.6E-06 47.1 19.2 139 199-341 31-208 (452)
327 3pbp_A Nucleoporin NUP82; beta 96.5 0.099 3.4E-06 49.5 16.1 112 285-400 32-159 (452)
328 2g8s_A Glucose/sorbosone dehyd 96.2 0.81 2.8E-05 42.7 25.1 101 232-333 18-148 (353)
329 2ism_A Putative oxidoreductase 96.2 0.83 2.8E-05 42.6 25.6 140 188-332 31-220 (352)
330 2uvk_A YJHT; unknown function, 96.0 0.37 1.3E-05 45.0 17.6 52 444-497 286-343 (357)
331 1tl2_A L10, protein (tachylect 96.0 0.53 1.8E-05 40.2 16.1 185 286-489 5-203 (236)
332 1xi4_A Clathrin heavy chain; a 95.5 0.6 2.1E-05 51.2 18.2 221 253-498 48-291 (1630)
333 3das_A Putative oxidoreductase 95.5 1.6 5.5E-05 40.4 29.4 108 226-333 26-158 (347)
334 3sre_A PON1, serum paraoxonase 95.3 1.8 6.3E-05 40.2 30.1 135 208-345 81-252 (355)
335 1tl2_A L10, protein (tachylect 95.3 0.38 1.3E-05 41.1 12.8 138 243-393 4-157 (236)
336 3s25_A Hypothetical 7-bladed b 95.0 2 6.8E-05 39.0 22.1 243 199-494 24-291 (302)
337 3a9g_A Putative uncharacterize 95.0 2.3 7.8E-05 39.6 28.0 140 188-332 29-215 (354)
338 2zwa_A Leucine carboxyl methyl 94.4 1.6 5.5E-05 45.0 17.7 193 284-497 397-636 (695)
339 2g8s_A Glucose/sorbosone dehyd 94.1 3.7 0.00013 38.1 22.9 140 188-332 18-214 (353)
340 1cru_A Protein (soluble quinop 94.0 4.6 0.00016 39.0 30.4 103 231-333 26-162 (454)
341 1cru_A Protein (soluble quinop 94.0 3.4 0.00012 40.0 18.2 102 188-291 27-162 (454)
342 3sbq_A Nitrous-oxide reductase 93.1 7.2 0.00025 38.4 21.2 198 199-399 141-408 (638)
343 3ott_A Two-component system se 92.3 12 0.0004 38.9 35.5 278 189-496 104-401 (758)
344 2zwa_A Leucine carboxyl methyl 91.7 3 0.0001 43.0 14.8 109 379-497 451-578 (695)
345 3ott_A Two-component system se 91.2 16 0.00053 37.9 33.4 282 189-496 192-502 (758)
346 3no0_A DNA gyrase subunit A; D 91.0 8.1 0.00028 34.4 20.5 201 188-398 24-245 (276)
347 3s25_A Hypothetical 7-bladed b 89.4 12 0.0004 33.8 22.4 140 193-346 58-217 (302)
348 3uc1_A DNA gyrase subunit A; D 88.8 14 0.00047 33.8 23.4 203 188-398 42-278 (327)
349 3sbq_A Nitrous-oxide reductase 88.4 0.76 2.6E-05 45.0 6.4 81 265-345 315-408 (638)
350 3b7f_A Glycosyl hydrolase, BNR 87.2 19 0.00066 33.6 25.9 139 200-341 22-204 (394)
351 4gq2_M Nucleoporin NUP120; bet 87.0 14 0.00049 39.4 16.0 38 233-270 237-274 (950)
352 1zi0_A DNA gyrase subunit A; b 86.2 19 0.00065 32.5 27.8 242 242-495 2-276 (307)
353 3das_A Putative oxidoreductase 85.6 22 0.00076 32.7 28.4 143 187-332 31-219 (347)
354 3l6v_A GYRA, DNA gyrase subuni 83.5 29 0.00098 32.3 26.4 153 239-398 3-179 (370)
355 1suu_A DNA gyrase subunit A; t 80.0 34 0.0012 30.9 26.9 200 241-452 6-231 (312)
356 3qhy_B Beta-lactamase inhibito 78.4 36 0.0012 30.2 20.0 220 232-495 24-245 (282)
357 3kci_A Probable E3 ubiquitin-p 76.9 48 0.0017 30.9 25.3 143 199-344 61-240 (389)
358 3b7f_A Glycosyl hydrolase, BNR 75.7 51 0.0018 30.6 26.0 151 188-341 55-258 (394)
359 3no0_A DNA gyrase subunit A; D 74.2 46 0.0016 29.4 22.7 206 232-452 24-246 (276)
360 1wp5_A Topoisomerase IV; broke 74.1 52 0.0018 29.9 24.9 243 241-495 3-276 (323)
361 4fhn_B Nucleoporin NUP120; pro 73.1 11 0.00038 41.3 9.4 39 233-271 239-277 (1139)
362 1sqj_A OXG-RCBH, oligoxylogluc 71.7 99 0.0034 32.1 16.9 149 187-339 14-195 (789)
363 3uc1_A DNA gyrase subunit A; D 67.0 75 0.0026 28.9 25.5 241 200-452 3-279 (327)
364 1wp5_A Topoisomerase IV; broke 63.2 88 0.003 28.3 23.9 202 189-398 40-276 (323)
365 3f7f_A Nucleoporin NUP120; nuc 59.6 15 0.00052 37.4 6.4 37 233-271 223-259 (729)
366 3kci_A Probable E3 ubiquitin-p 54.0 1.4E+02 0.0047 27.7 27.8 274 201-495 11-344 (389)
367 1suu_A DNA gyrase subunit A; t 54.0 1.2E+02 0.0042 27.1 26.3 154 189-345 48-231 (312)
368 1zi0_A DNA gyrase subunit A; b 51.5 1.3E+02 0.0046 26.8 27.8 192 199-398 2-225 (307)
369 2wg3_C Hedgehog-interacting pr 50.8 1.7E+02 0.006 27.9 14.6 30 315-344 14-44 (463)
370 3q6k_A 43.2 kDa salivary prote 42.7 2.1E+02 0.0072 26.5 21.2 58 254-311 124-197 (381)
371 4hvt_A Ritya.17583.B, post-pro 41.8 3E+02 0.01 28.1 25.9 236 239-495 137-429 (711)
372 4gq2_M Nucleoporin NUP120; bet 41.8 3.5E+02 0.012 28.8 23.7 23 378-400 245-267 (950)
373 4fhn_B Nucleoporin NUP120; pro 41.0 40 0.0014 36.9 6.7 31 467-497 239-269 (1139)
374 3zwu_A Alkaline phosphatase PH 39.4 95 0.0033 30.9 8.5 59 189-249 477-548 (592)
375 3a0f_A Xyloglucanase; beta-pro 39.3 3.4E+02 0.011 27.9 16.9 148 186-336 19-203 (763)
376 3qhy_B Beta-lactamase inhibito 36.8 2.2E+02 0.0074 25.0 20.9 239 189-477 25-265 (282)
377 3f7f_A Nucleoporin NUP120; nuc 36.3 60 0.0021 33.1 6.5 37 188-228 222-258 (729)
378 4a9v_A PHOX; hydrolase, beta-p 32.4 2E+02 0.0069 28.4 9.3 61 188-250 476-549 (592)
379 1zvt_A Topoisomerase IV subuni 32.0 2.5E+02 0.0085 24.2 13.5 149 245-399 4-163 (256)
380 3l6v_A GYRA, DNA gyrase subuni 31.5 3.1E+02 0.011 25.2 24.8 161 284-451 6-179 (370)
381 2wg3_C Hedgehog-interacting pr 31.2 3.5E+02 0.012 25.8 29.5 103 232-334 14-158 (463)
382 4d9s_A UVB-resistance protein 29.4 3.4E+02 0.012 25.1 33.3 279 189-495 17-356 (406)
383 4d9s_A UVB-resistance protein 28.5 3.6E+02 0.012 25.0 27.0 105 233-344 122-252 (406)
384 3zwu_A Alkaline phosphatase PH 27.3 1.7E+02 0.0059 29.1 8.0 54 428-483 482-548 (592)
385 1zvt_A Topoisomerase IV subuni 26.9 3.1E+02 0.01 23.7 16.1 157 287-452 4-163 (256)
386 1q47_A Semaphorin 3A; beta pro 25.2 2.1E+02 0.0072 27.7 8.1 58 434-491 422-487 (495)
387 1xks_A Nuclear pore complex pr 25.1 4.5E+02 0.015 25.0 17.4 24 471-495 213-236 (450)
388 3nvq_A Semaphorin-7A; beta-pro 23.6 2.4E+02 0.0081 28.0 8.1 58 434-491 381-444 (590)
389 4a9v_A PHOX; hydrolase, beta-p 23.6 3.1E+02 0.011 27.1 8.8 58 274-332 477-548 (592)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-44 Score=351.19 Aligned_cols=291 Identities=18% Similarity=0.337 Sum_probs=246.7
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 261 (498)
.+.+|.++|++++|+| ++.+|++|+.||+|+|||+.+ ++....+.+|.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus 103 ~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~-~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp EEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 5789999999999999 899999999999999999998 78889999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEE
Q 010871 262 KGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 262 ~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
+++++..+.+|. .+.+++|+|+ +.+|++|+.|++|++||++++.++..+ .|...|.++++++++.+|++|+.||.|+
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCceeEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 999999998875 7889999995 578999999999999999999998888 4788999999999999999999999999
Q ss_pred EEEccCCcccccccccccccCCCccceeeEEEeEee---------------EcCCCcEEEEEEcCCcEEEEEccccccce
Q 010871 340 SISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFS---------------LLAGGPVLLTCTQDGNLSFFSVALEIQGY 404 (498)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~s~~~~~l~t~s~dg~i~iwd~~~~~~~~ 404 (498)
+||+....... .+..|...|.++.|.+-. ....+.+|++|+.|+.|++||+..+..
T Consensus 260 vwd~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~-- 330 (410)
T 1vyh_C 260 VWVVATKECKA-------ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-- 330 (410)
T ss_dssp EEETTTCCEEE-------EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE--
T ss_pred EEECCCCceee-------EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce--
Confidence 99987543222 235788889998886210 001277999999999999999986521
Q ss_pred eeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEe
Q 010871 405 LTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSD 484 (498)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~ 484 (498)
......+...+.. +.|+| +|.+|++|+.||.|++||+.++ .++..+.+|...|++++|+|++.+|++|+
T Consensus 331 --~~~~~~h~~~v~~--v~~~~-----~g~~l~s~s~D~~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 331 --LMTLVGHDNWVRG--VLFHS-----GGKFILSCADDKTLRVWDYKNK--RCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399 (410)
T ss_dssp --EEEEECCSSCEEE--EEECS-----SSSCEEEEETTTEEEEECCTTS--CCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred --EEEEECCCCcEEE--EEEcC-----CCCEEEEEeCCCeEEEEECCCC--ceEEEEcCCCCcEEEEEEcCCCCEEEEEe
Confidence 1111122222222 35555 9999999999999999999884 46888999999999999999999999999
Q ss_pred CCCeEEEeecC
Q 010871 485 LYGIVIVWKRA 495 (498)
Q Consensus 485 ~Dg~i~iW~~~ 495 (498)
.||+|+||++.
T Consensus 400 ~D~~i~vW~~r 410 (410)
T 1vyh_C 400 VDQTVKVWECR 410 (410)
T ss_dssp TTSEEEEEC--
T ss_pred CCCcEEEEeCC
Confidence 99999999863
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.7e-43 Score=334.22 Aligned_cols=286 Identities=16% Similarity=0.268 Sum_probs=243.7
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
...|.+|.+.|++++|+| ++++|++|+.||+|+|||+.+ ......+..|...|.+++|+|++++|++|+.|+.|++|+
T Consensus 48 ~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTT-CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred heeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCC-CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 457899999999999999 999999999999999999988 778888999999999999999999999999999999999
Q ss_pred CCCC----cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEc
Q 010871 260 LTKG----DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 260 ~~~~----~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~ 333 (498)
+.++ .....+.+|. .+.++.|.+++ .+++++.|+.|++||+.+++.+..+ .|...|.+++|+|++++|++|+
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 9875 3556677775 67789998854 5888999999999999999998888 4888999999999999999999
Q ss_pred CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeecc
Q 010871 334 AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKL 413 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 413 (498)
.||.|++||++..... ..+..|...|.++.|+ |++++|++++.||.|++||++.... . .....
T Consensus 204 ~d~~v~~wd~~~~~~~-------~~~~~h~~~v~~v~~~-----p~~~~l~s~s~d~~v~iwd~~~~~~---~--~~~~~ 266 (340)
T 1got_B 204 CDASAKLWDVREGMCR-------QTFTGHESDINAICFF-----PNGNAFATGSDDATCRLFDLRADQE---L--MTYSH 266 (340)
T ss_dssp TTSCEEEEETTTCSEE-------EEECCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEE---E--EEECC
T ss_pred CCCcEEEEECCCCeeE-------EEEcCCcCCEEEEEEc-----CCCCEEEEEcCCCcEEEEECCCCcE---E--EEEcc
Confidence 9999999998754322 1236788889988887 9999999999999999999985421 1 11111
Q ss_pred CCce-eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEe
Q 010871 414 APRV-HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVW 492 (498)
Q Consensus 414 ~~~~-~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW 492 (498)
.... ....+.|+| +|++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|++.+|++|+.||.|+||
T Consensus 267 ~~~~~~v~~~~~s~-----~g~~l~~g~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 267 DNIICGITSVSFSK-----SGRLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp TTCCSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCcccceEEEEECC-----CCCEEEEECCCCeEEEEEcccCc--EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 1111 122235555 99999999999999999998844 678899999999999999999999999999999999
Q ss_pred e
Q 010871 493 K 493 (498)
Q Consensus 493 ~ 493 (498)
+
T Consensus 340 d 340 (340)
T 1got_B 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 7
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=330.26 Aligned_cols=289 Identities=21% Similarity=0.333 Sum_probs=242.5
Q ss_pred eeeecccccEEEEEEecC---CCCEEEEEeCCCcEEEEEcCCCC-ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 010871 181 CIFDQCKAAVTILKFGHM---SSDLLAYGASDGTLTVCTVSDPP-KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVR 256 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~---~~~~lasg~~dg~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~ 256 (498)
..+.+|.+.|++|+|+|+ ++.+|++|+.|++|+||++.... .....+.+|...|.+++|++++.++++++.|++|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 456799999999999973 36799999999999999998632 23456889999999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcC
Q 010871 257 VWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 257 iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
+||+.+++.+..+..+. .+.+++|+|+ +.+|++|+.+|.|++||+++++....+. +...|.+++|+|++++|++|+.
T Consensus 106 lWd~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~ 184 (321)
T 3ow8_A 106 LWDLENGKQIKSIDAGPVDAWTLAFSPD-SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184 (321)
T ss_dssp EEETTTTEEEEEEECCTTCCCCEEECTT-SSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCCCCEEEEEeCCCccEEEEEECCC-CCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC
Confidence 99999999999988764 6779999995 5789999999999999999999888774 6778999999999999999999
Q ss_pred CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccC
Q 010871 335 QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLA 414 (498)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 414 (498)
||.|++||+...... ..+..|..+|.++.|+ |++++|++++.|+.|++||++.... ......+.
T Consensus 185 dg~i~iwd~~~~~~~-------~~~~~h~~~v~~l~~s-----pd~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~ 248 (321)
T 3ow8_A 185 DGIINIFDIATGKLL-------HTLEGHAMPIRSLTFS-----PDSQLLVTASDDGYIKIYDVQHANL----AGTLSGHA 248 (321)
T ss_dssp TSCEEEEETTTTEEE-------EEECCCSSCCCEEEEC-----TTSCEEEEECTTSCEEEEETTTCCE----EEEECCCS
T ss_pred CCeEEEEECCCCcEE-------EEEcccCCceeEEEEc-----CCCCEEEEEcCCCeEEEEECCCcce----eEEEcCCC
Confidence 999999998754321 1236788889988887 9999999999999999999975421 11111122
Q ss_pred CceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 415 PRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
..+ ..+.|+| ++.+|++|+.|++|++||+.+ ..++..+.+|...|.+++|+|++.+|++++.||.|+|||.
T Consensus 249 ~~v--~~~~~sp-----~~~~l~s~s~D~~v~iwd~~~--~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 249 SWV--LNVAFCP-----DDTHFVSSSSDKSVKVWDVGT--RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SCE--EEEEECT-----TSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred Cce--EEEEECC-----CCCEEEEEeCCCcEEEEeCCC--CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 222 2335655 999999999999999999998 4578899999999999999999999999999999999997
Q ss_pred C
Q 010871 495 A 495 (498)
Q Consensus 495 ~ 495 (498)
.
T Consensus 320 p 320 (321)
T 3ow8_A 320 P 320 (321)
T ss_dssp C
T ss_pred C
Confidence 4
No 4
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-41 Score=322.05 Aligned_cols=292 Identities=25% Similarity=0.448 Sum_probs=246.8
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
...+.+|.+.|++++|+| ++++||+|+.||.|+||++.+ ++....+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 16 ~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCC-cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 557899999999999999 999999999999999999987 778888999999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCe
Q 010871 260 LTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGC 337 (498)
Q Consensus 260 ~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~ 337 (498)
+.+++++..+.+|. .+.++.|+|+ +.+|++|+.|+.|++||+++++.+..+ .|...|.+++|+|++++|++++.||.
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 99999999999875 6789999994 578999999999999999999988888 47789999999999999999999999
Q ss_pred EEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCce
Q 010871 338 IYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRV 417 (498)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 417 (498)
|++||++........ ...+..++..+.|. |++++|++++.|+.|++||+..... ......+....
T Consensus 173 i~~wd~~~~~~~~~~------~~~~~~~~~~~~~~-----~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~ 237 (312)
T 4ery_A 173 CRIWDTASGQCLKTL------IDDDNPPVSFVKFS-----PNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEK 237 (312)
T ss_dssp EEEEETTTCCEEEEE------CCSSCCCEEEEEEC-----TTSSEEEEEETTTEEEEEETTTTEE----EEEECSSCCSS
T ss_pred EEEEECCCCceeeEE------eccCCCceEEEEEC-----CCCCEEEEEcCCCeEEEEECCCCcE----EEEEEecCCce
Confidence 999998754322111 13455667777666 9999999999999999999986421 11111122222
Q ss_pred eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEe--CCCeEEEeecC
Q 010871 418 HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSD--LYGIVIVWKRA 495 (498)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~--~Dg~i~iW~~~ 495 (498)
..+...+.+ +++.+|++|+.||.|++||+.++ ..+..+.+|...|.+++|+|++++|++++ .||.|++|+.+
T Consensus 238 ~~~~~~~~~----~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 238 YCIFANFSV----TGGKWIVSGSEDNLVYIWNLQTK--EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCCCEEEEC----SSSCEEEECCTTSCEEEEETTTC--CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEEEEe----CCCcEEEEECCCCEEEEEECCCc--hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 223233433 47899999999999999999984 46889999999999999999999999997 69999999975
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.8e-43 Score=342.89 Aligned_cols=298 Identities=16% Similarity=0.254 Sum_probs=243.9
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
...|.||.+.|++++|+| ++++||+|+.||+|+|||+.+ +.....+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 59 ~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALT-SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTT-TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred eecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 346899999999999999 999999999999999999988 788889999999999999999999999999999999999
Q ss_pred CCCCc-------EEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe------ecCCCeEEEEEcC-
Q 010871 260 LTKGD-------CIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL------VVDSEVTSMDHDH- 324 (498)
Q Consensus 260 ~~~~~-------~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~------~~~~~i~~l~~~~- 324 (498)
+.+.. ....+.+|. .+.++.|.|+++..|++|+.|++|++||+.+++.+..+ .|...|.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence 87532 334455664 57789999987888999999999999999999988776 3677899999987
Q ss_pred CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccce
Q 010871 325 TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGY 404 (498)
Q Consensus 325 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~ 404 (498)
++.+|++|+.||.|++||++...... ....+|...|.++.|. |++.+|++++.||+|++||++.+....
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~------~~~~~h~~~v~~v~~~-----p~~~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAV------RTYHGHEGDINSVKFF-----PDGQRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCC------EEECCCSSCCCEEEEC-----TTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCeEEEEECCCCCcce------EEECCcCCCeEEEEEe-----cCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence 78899999999999999987432211 2246788999999887 999999999999999999998653211
Q ss_pred eeEeEeeccCCce-eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeee----cCCCCCeEEEEEcCCCCE
Q 010871 405 LTFRCSLKLAPRV-HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL----QGHRFPVVAVAWNHGENL 479 (498)
Q Consensus 405 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~ 479 (498)
............. ....++|+| +|++|++|+.||.|++||+..++ .+..+ .+|.+.|++++|+|++.+
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~-----~g~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSI-----SGRLLFAGYSNGDCYVWDTLLAE--MVLNLGTLQNSHEGRISCLGLSSDGSA 358 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECS-----SSSEEEEECTTSCEEEEETTTCC--EEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred EecccccccccccCceEEEEECC-----CCCEEEEEECCCCEEEEECCCCc--eEEEEecccCCCCCceEEEEECCCCCE
Confidence 1000000000000 112235555 99999999999999999998754 34444 689999999999999999
Q ss_pred EEEEeCCCeEEEeecCCC
Q 010871 480 LASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 480 l~s~~~Dg~i~iW~~~~~ 497 (498)
|++|+.||+|+||++...
T Consensus 359 l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 359 LCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEEECTTSCEEEEECCSS
T ss_pred EEEeeCCCCEEEEecCCC
Confidence 999999999999999764
No 6
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-41 Score=323.19 Aligned_cols=292 Identities=16% Similarity=0.286 Sum_probs=237.9
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC----CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCc
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP----PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKT 254 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~----~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~ 254 (498)
+...|.||.+.|++++|+|.++++|++|+.|++|++|++... +..+..+.+|...|.+++|+|++++|++|+.|++
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 456789999999999999955689999999999999998642 2346788999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCC------CC
Q 010871 255 VRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHT------GQ 327 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~------~~ 327 (498)
|++||+.+++.+..+.+|. .+.+++|+| ++.+|++|+.|++|++||++.........|...|.++++.|. +.
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 9999999999999999885 788999999 457999999999999999975444434468899999999985 44
Q ss_pred EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeE
Q 010871 328 LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTF 407 (498)
Q Consensus 328 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~ 407 (498)
.|++++.|+.|++||++..... ..+.+|...|.++.|+ |++++|++++.||.|++||+.....
T Consensus 168 ~l~s~~~d~~i~~wd~~~~~~~-------~~~~~h~~~v~~~~~s-----p~g~~l~s~~~dg~i~iwd~~~~~~----- 230 (319)
T 3frx_A 168 TIISAGNDKMVKAWNLNQFQIE-------ADFIGHNSNINTLTAS-----PDGTLIASAGKDGEIMLWNLAAKKA----- 230 (319)
T ss_dssp EEEEEETTSCEEEEETTTTEEE-------EEECCCCSCEEEEEEC-----TTSSEEEEEETTCEEEEEETTTTEE-----
T ss_pred EEEEEeCCCEEEEEECCcchhh-------eeecCCCCcEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCcE-----
Confidence 8999999999999998754321 1236788899988877 9999999999999999999986422
Q ss_pred eEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeee--------cCCCCCeEEEEEcCCCCE
Q 010871 408 RCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL--------QGHRFPVVAVAWNHGENL 479 (498)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~--------~~h~~~V~~l~~sp~~~~ 479 (498)
......... ...+.|+| ++.+|++++.++ +++|++.... .+..+ ..|...+.+++|+|+|++
T Consensus 231 ~~~~~~~~~--v~~~~~sp-----~~~~la~~~~~~-i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 300 (319)
T 3frx_A 231 MYTLSAQDE--VFSLAFSP-----NRYWLAAATATG-IKVFSLDPQY--LVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300 (319)
T ss_dssp EEEEECCSC--EEEEEECS-----SSSEEEEEETTE-EEEEEETTEE--EEEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred EEEecCCCc--EEEEEEcC-----CCCEEEEEcCCC-cEEEEeCcCe--eeeccCccccccccCcCcceeEEEECCCCCE
Confidence 111112222 23346665 999999888654 9999998732 33333 235678999999999999
Q ss_pred EEEEeCCCeEEEeecCCCC
Q 010871 480 LASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 480 l~s~~~Dg~i~iW~~~~~s 498 (498)
|++|+.||.|+||++.+++
T Consensus 301 l~sg~~Dg~i~vWd~~t~~ 319 (319)
T 3frx_A 301 LFAGYTDNVIRVWQVMTAN 319 (319)
T ss_dssp EEEEETTSCEEEEEEEEC-
T ss_pred EEEeecCceEEEEEEeecC
Confidence 9999999999999998753
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.6e-41 Score=327.13 Aligned_cols=287 Identities=14% Similarity=0.197 Sum_probs=241.2
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
...|.||.+.|++++|+| ++.+||+|+.||+|+|||..+ ......+..|...|.+++|+|++.+|++++.|+.+++|+
T Consensus 57 ~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFT-TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCC-CCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 457899999999999999 899999999999999999987 677788889999999999999999999999999999999
Q ss_pred CCCC------cEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcC--CCCEE
Q 010871 260 LTKG------DCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDH--TGQLL 329 (498)
Q Consensus 260 ~~~~------~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~--~~~~l 329 (498)
+... .....+..| ..+.++.|+|+ +..|++++.|++|++||+++++.+..+ .|...|.+++++| ++++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 8643 234555556 46789999995 578889999999999999999999888 4888999999987 46899
Q ss_pred EEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeE
Q 010871 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRC 409 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 409 (498)
++|+.||.|++||++..... ..+..|...|.++.|. |++.+|++++.|+.|++||++..... .
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~-------~~~~~h~~~v~~v~~~-----p~~~~l~s~s~D~~v~lwd~~~~~~~-----~ 276 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCV-------QAFETHESDVNSVRYY-----PSGDAFASGSDDATCRLYDLRADREV-----A 276 (354)
T ss_dssp EEEETTSCEEEEETTTCCEE-------EEECCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEE-----E
T ss_pred EEEeCCCeEEEEECCCCcEE-------EEecCCCCCeEEEEEe-----CCCCEEEEEeCCCeEEEEECCCCcEE-----E
Confidence 99999999999999764322 1236788899988887 99999999999999999999854211 1
Q ss_pred eeccCC-ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCe
Q 010871 410 SLKLAP-RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGI 488 (498)
Q Consensus 410 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~ 488 (498)
...... ......+.|+| ++.+|++|+.|+.|++||+.++. .+..+.+|...|++++|+|++++|++|+.||+
T Consensus 277 ~~~~~~~~~~~~~~~~s~-----~g~~l~~g~~d~~i~vwd~~~~~--~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 277 IYSKESIIFGASSVDFSL-----SGRLLFAGYNDYTINVWDVLKGS--RVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp EECCTTCCSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred EEcCCCcccceeEEEEeC-----CCCEEEEEECCCcEEEEECCCCc--eEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence 111111 11122335554 99999999999999999998854 57888999999999999999999999999999
Q ss_pred EEEee
Q 010871 489 VIVWK 493 (498)
Q Consensus 489 i~iW~ 493 (498)
|+||+
T Consensus 350 v~vW~ 354 (354)
T 2pbi_B 350 LRVWA 354 (354)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.4e-41 Score=317.88 Aligned_cols=292 Identities=14% Similarity=0.161 Sum_probs=239.1
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
....|.+|.+.|++++|+| ++++|++|+.||.|+|||+.+ +..+..+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eEEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCC-CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 3567899999999999999 999999999999999999998 78888999999999999999999999999999999999
Q ss_pred ECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEE-EEe-ecCCCeEEEEEcC-CCCEEEEEcC
Q 010871 259 ELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRII-KKL-VVDSEVTSMDHDH-TGQLLFCGDA 334 (498)
Q Consensus 259 d~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-~~~-~~~~~i~~l~~~~-~~~~l~~~~~ 334 (498)
|+.+++++..+.+|. .+.+++|+|+ +.+|++|+.|++|++||++++..+ ..+ .|...|.+++|+| ++..|++|+.
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 999999999999885 6889999995 578999999999999999987544 444 5889999999999 5789999999
Q ss_pred CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccC
Q 010871 335 QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLA 414 (498)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 414 (498)
||.|++||+......... ...+...+..+.+. ..+++.+|++++.|+.|++||++.... ......+.
T Consensus 162 D~~v~iwd~~~~~~~~~~------~~~~~~~v~~~~~~---~~~~~~~l~s~s~D~~i~iWd~~~~~~----~~~~~~h~ 228 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTL------TTGQERGVNYVDYY---PLPDKPYMITASDDLTIKIWDYQTKSC----VATLEGHM 228 (304)
T ss_dssp TSEEEEEETTCSSCSEEE------ECCCTTCEEEEEEC---CSTTCCEEEEEETTSEEEEEETTTTEE----EEEEECCS
T ss_pred CCeEEEEECCCCCcccee------ccCCcCcEEEEEEE---EcCCCCEEEEEcCCCeEEEEeCCCCcc----ceeeCCCC
Confidence 999999998654432211 13455667766664 225788999999999999999986421 11111122
Q ss_pred CceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEe
Q 010871 415 PRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGEN--LLASSDLYGIVIVW 492 (498)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~~~Dg~i~iW 492 (498)
..+. .+.|+| ++.+|++|+.||+|++||+.++ .++..+..|...+.+++|+|++. +|++|+. ..+.+|
T Consensus 229 ~~v~--~~~~~p-----~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~-~g~~~~ 298 (304)
T 2ynn_A 229 SNVS--FAVFHP-----TLPIIISGSEDGTLKIWNSSTY--KVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGFTVL 298 (304)
T ss_dssp SCEE--EEEECS-----SSSEEEEEETTSCEEEEETTTC--CEEEEECCSSSSEEEEEECTTCGGGCEEEEET-TEEEEE
T ss_pred CCEE--EEEECC-----CCCEEEEEcCCCeEEEEECCCC--ceeeeccCCCccEEEEEECCCCCceEEEEecC-CceEEE
Confidence 2222 235555 9999999999999999999984 46888999999999999999875 5777765 567888
Q ss_pred ecCC
Q 010871 493 KRAK 496 (498)
Q Consensus 493 ~~~~ 496 (498)
++.+
T Consensus 299 ~~~~ 302 (304)
T 2ynn_A 299 SLGN 302 (304)
T ss_dssp ECC-
T ss_pred Eecc
Confidence 8765
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-41 Score=323.05 Aligned_cols=301 Identities=19% Similarity=0.293 Sum_probs=235.9
Q ss_pred eeeeecccc-cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCce-e-EEeecCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 010871 180 HCIFDQCKA-AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV-I-KLLNGHSKDVTDFDFSSNNQYIASSSMDKTVR 256 (498)
Q Consensus 180 ~~~~~~h~~-~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~-~-~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~ 256 (498)
...+.+|.+ .|++++|+| ++++||+|+.|++|+|||+.+.... . ....+|...|.+++|+|++++|++|+.|++|+
T Consensus 8 ~~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp EEEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence 446789988 999999999 9999999999999999999873222 2 22368999999999999999999999999999
Q ss_pred EEECCCC--cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE---EEEe-ecCCCeEEEEEcCCCCEE
Q 010871 257 VWELTKG--DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI---IKKL-VVDSEVTSMDHDHTGQLL 329 (498)
Q Consensus 257 iwd~~~~--~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~-~~~~~i~~l~~~~~~~~l 329 (498)
+||+..+ +++..+.+|. .+.+++|+|+ +.+|++|+.|+.|++||+.++.. +..+ .|...|.+++|+|++.+|
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred EEEccCCCeEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence 9999876 4567788774 7889999994 57999999999999999987643 3444 478899999999999999
Q ss_pred EEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccccccee----
Q 010871 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYL---- 405 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~---- 405 (498)
++|+.|+.|++|+......... ....+|...|.++.|+ |++++|++++.|+.|++|+.........
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~-----~~~~~h~~~v~~l~~s-----p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~ 235 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCC-----ATLEGHESTVWSLAFD-----PSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEE-----EEECCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred EEEeCCCcEEEEEecCCCEEEE-----EEecCCCCceEEEEEC-----CCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence 9999999999999865432211 1236788899998887 9999999999999999999753221100
Q ss_pred ----eEeEeeccC--CceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCcc-------ceeeecCCCCCeEEEE
Q 010871 406 ----TFRCSLKLA--PRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHS-------CVNKLQGHRFPVVAVA 472 (498)
Q Consensus 406 ----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~-------~~~~~~~h~~~V~~l~ 472 (498)
...+..... .......+.|++ ++.+|++++.|+.|++|+....... ......+|...|++|+
T Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 310 (345)
T 3fm0_A 236 GSDPSWKCICTLSGFHSRTIYDIAWCQ-----LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310 (345)
T ss_dssp ---CEEEEEEEECSSCSSCEEEEEECT-----TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEE
T ss_pred ccCCccceeEEecCCCCCcEEEEEEec-----CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeE
Confidence 011111111 111122235554 9999999999999999998754211 1123468999999999
Q ss_pred EcCCC-CEEEEEeCCCeEEEeecCCC
Q 010871 473 WNHGE-NLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 473 ~sp~~-~~l~s~~~Dg~i~iW~~~~~ 497 (498)
|+|++ .+||+|+.||+|++|++.++
T Consensus 311 ~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 311 WNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp ECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred EeCCCceEEEEcCCCCcEEEEEecCC
Confidence 99998 49999999999999998764
No 10
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-40 Score=319.91 Aligned_cols=292 Identities=19% Similarity=0.258 Sum_probs=234.2
Q ss_pred eeeeecccccEEEEEE-----ecCCCCEEEEEeCCCcEEEEEcCCC------CceeEEeecCCCCeEEEEEccCCCEEEE
Q 010871 180 HCIFDQCKAAVTILKF-----GHMSSDLLAYGASDGTLTVCTVSDP------PKVIKLLNGHSKDVTDFDFSSNNQYIAS 248 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~-----sp~~~~~lasg~~dg~i~iwd~~~~------~~~~~~~~~h~~~V~~l~~s~~~~~l~s 248 (498)
...|.||.+.|++++| ++.++.+||+|+.|++|+|||+... +.....+.+|...|.+++|+|++.+|++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 4578999999999999 6558899999999999999999752 2456778999999999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe---ecCCCeEEEEEcC
Q 010871 249 SSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL---VVDSEVTSMDHDH 324 (498)
Q Consensus 249 ~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~i~~l~~~~ 324 (498)
|+.|++|++||+.+++.+..+.+|. .+.+++|+|+ +.+|++++.|++|++||+......... .|...|.+++|+|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD-NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP 172 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS-TTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC-CCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc
Confidence 9999999999999999999998885 7889999995 578899999999999999844333332 4678899999999
Q ss_pred CC----------CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEE
Q 010871 325 TG----------QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSF 394 (498)
Q Consensus 325 ~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~i 394 (498)
++ .+|++++.||.|++||.... .. .....|...|.++.|+ |++++|++++.||.|++
T Consensus 173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~-----~~~~~h~~~v~~~~~s-----~~g~~l~sgs~dg~v~i 239 (343)
T 2xzm_R 173 IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ---IR-----YTFKAHESNVNHLSIS-----PNGKYIATGGKDKKLLI 239 (343)
T ss_dssp CCCSCSCCCSSCCEEEEEETTSEEEEEETTTE---EE-----EEEECCSSCEEEEEEC-----TTSSEEEEEETTCEEEE
T ss_pred ccccccccCCCCCEEEEEcCCCEEEEEcCCCc---ee-----EEEcCccccceEEEEC-----CCCCEEEEEcCCCeEEE
Confidence 87 78999999999999994321 11 1235788889888877 99999999999999999
Q ss_pred EEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec-----------C
Q 010871 395 FSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ-----------G 463 (498)
Q Consensus 395 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~-----------~ 463 (498)
||+......... ......+ ..+.|+| ++.++++| .|+.|++||+.+.+...+..+. +
T Consensus 240 wd~~~~~~~~~~----~~~~~~v--~~v~~sp-----~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 240 WDILNLTYPQRE----FDAGSTI--NQIAFNP-----KLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp EESSCCSSCSEE----EECSSCE--EEEEECS-----SSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred EECCCCccccee----ecCCCcE--EEEEECC-----CCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 998532211111 1112222 2335555 88887755 5778999999875533322333 7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 464 HRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 464 h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
|...|.+++|+|++++|++|+.||.|++|+++++
T Consensus 308 ~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 308 KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 8889999999999999999999999999998754
No 11
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-40 Score=325.57 Aligned_cols=296 Identities=20% Similarity=0.352 Sum_probs=235.8
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCC------------------CeEEEEEccCCCEE
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSK------------------DVTDFDFSSNNQYI 246 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~------------------~V~~l~~s~~~~~l 246 (498)
+|.+.|+|++|+| ++++||+|+ ++.++||++.+ +..+..+..|.. .|.+++|+|++++|
T Consensus 62 ~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecC-CCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 6999999999999 999999987 78999999988 666767665542 49999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcC-
Q 010871 247 ASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDH- 324 (498)
Q Consensus 247 ~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~- 324 (498)
++|+.|++|++||+.+++.+..+.+|. .+.+++|+|+ +.+|++|+.|++|++||+++++....+.+...+.+++|+|
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 217 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 217 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC-CCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence 999999999999999999999998885 6889999995 4788999999999999999999998888889999999999
Q ss_pred CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccce
Q 010871 325 TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGY 404 (498)
Q Consensus 325 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~ 404 (498)
++++|++|+.||.|++||++................+|...|.++.|. |++.+|++++.|+.|++||+.......
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-----~~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-----RDGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEEC-------
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC-----CCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 899999999999999999875432221111112225688889988887 999999999999999999997532211
Q ss_pred e-----eEeEeeccCCc-eeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcC---
Q 010871 405 L-----TFRCSLKLAPR-VHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH--- 475 (498)
Q Consensus 405 ~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp--- 475 (498)
. ...+......+ .....+.|+ +++.+|++|+.|+.|++||+.+++ ++..+.+|...|.+++|++
T Consensus 293 ~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~sgs~D~~v~iwd~~~~~--~~~~l~~h~~~v~~v~~~~~~~ 365 (393)
T 1erj_A 293 DSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGN--PLLMLQGHRNSVISVAVANGSS 365 (393)
T ss_dssp --------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSCT
T ss_pred cccCCCCCcceEEEecccCcEEEEEEC-----CCCCEEEEEeCCCeEEEEECCCCe--EEEEECCCCCCEEEEEecCCcC
Confidence 0 00011111111 112223444 499999999999999999999854 6788999999999999986
Q ss_pred ---CCCEEEEEeCCCeEEEeecCC
Q 010871 476 ---GENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 476 ---~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
++.+|++|+.||+|+||++.+
T Consensus 366 ~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 366 LGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TCTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999864
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-40 Score=343.52 Aligned_cols=297 Identities=19% Similarity=0.265 Sum_probs=234.4
Q ss_pred eeeecccccEEEEEEecCCCC-EEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 181 CIFDQCKAAVTILKFGHMSSD-LLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~-~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
..+.+|.+.|++++|+| ++. +|++|+.|++|++||..+ .+....+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 141 ~~l~gh~~~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~-~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd 218 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218 (611)
T ss_dssp BCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceecCCCCCceEEEECC-CCCeEEEEEeCCCeEEEEECCC-CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence 35789999999999999 654 799999999999999887 788889999999999999999999999999999999999
Q ss_pred CCCCcEEEEEe-------cC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe--------------------
Q 010871 260 LTKGDCIRVIY-------GV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-------------------- 311 (498)
Q Consensus 260 ~~~~~~~~~~~-------~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-------------------- 311 (498)
+.+++++..+. +| ..+.+++|+|+ +.+|++++.|++|++||+.+++.+..+
T Consensus 219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (611)
T 1nr0_A 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297 (611)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred CCCCcEeeeeccccccccccCCCEEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence 99999988884 45 57889999995 578999999999999999987765433
Q ss_pred ------------------------ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccc--
Q 010871 312 ------------------------VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCP-- 365 (498)
Q Consensus 312 ------------------------~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-- 365 (498)
.|...|.+++|+|++++|++++.|+.|++||+.......... ..|...
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~------~~h~~~v~ 371 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP------DVHATMIT 371 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS------CSCSSCEE
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecc------cCCcceEE
Confidence 366789999999999999999999999999986533211100 000000
Q ss_pred ------------------------------------------eeeE--------------------------------EE
Q 010871 366 ------------------------------------------VTTV--------------------------------QY 371 (498)
Q Consensus 366 ------------------------------------------i~~~--------------------------------~~ 371 (498)
...+ ..
T Consensus 372 ~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v 451 (611)
T 1nr0_A 372 GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS 451 (611)
T ss_dssp EEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCE
T ss_pred EEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCc
Confidence 0000 01
Q ss_pred eEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 372 RSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 372 ~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
..++++|+|++|++|+.|+.|++||+...... .... ..+...+.. +.|+| +|++|++++.|++|++|++.
T Consensus 452 ~~va~spdg~~lasgs~D~~v~lwd~~~~~~~--~~~~-~~h~~~v~~--v~fsp-----dg~~las~s~d~~v~~w~~~ 521 (611)
T 1nr0_A 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVS--EVKT-IVHPAEITS--VAFSN-----NGAFLVATDQSRKVIPYSVA 521 (611)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEEEETTEEE--EEEE-EECSSCEEE--EEECT-----TSSEEEEEETTSCEEEEEGG
T ss_pred eEEEEeCCCCEEEEeCCCCeEEEEEccCCcee--eeec-cCCCCceEE--EEECC-----CCCEEEEEcCCCCEEEEEcC
Confidence 34566799999999999999999999753211 1111 223333332 35555 99999999999999999998
Q ss_pred CCCcccee--eecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 452 KPKHSCVN--KLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 452 ~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
+... ++. .+.+|...|++++|+|++++||+|+.|++|++|+++++
T Consensus 522 ~~~~-~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 522 NNFE-LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp GTTE-ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred CCCc-eeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 6221 222 24459999999999999999999999999999999764
No 13
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-40 Score=312.17 Aligned_cols=296 Identities=16% Similarity=0.227 Sum_probs=224.9
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC-ceeEEe-ec-CCCCeEEEEEccCCCEEEEEeCCCcEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP-KVIKLL-NG-HSKDVTDFDFSSNNQYIASSSMDKTVR 256 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~-~~~~~~-~~-h~~~V~~l~~s~~~~~l~s~s~dg~v~ 256 (498)
...|.+|.+.|++++|+| + +||+|+.|++|+|||+.... .....+ .+ |...|.+++|+|++++|++|+.|++|+
T Consensus 7 ~~~~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEEEECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ceeeccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 346889999999999998 4 99999999999999998632 445556 44 999999999999999999999999999
Q ss_pred EEECCC-------CcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC----cEEEEe-ecCCCeEEEEEc
Q 010871 257 VWELTK-------GDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTG----RIIKKL-VVDSEVTSMDHD 323 (498)
Q Consensus 257 iwd~~~-------~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~-~~~~~i~~l~~~ 323 (498)
+||+.. .+.+..+.+|. .+.+++|+|+ +.+|++|+.|++|++||+... +++..+ .|...|.+++|+
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 999853 35667777774 7889999995 579999999999999999432 455555 588899999999
Q ss_pred CCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCC--CcEEEEEEcCCcEEEEEccccc
Q 010871 324 HTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG--GPVLLTCTQDGNLSFFSVALEI 401 (498)
Q Consensus 324 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~--~~~l~t~s~dg~i~iwd~~~~~ 401 (498)
|++.+|++|+.|+.|++|+......... ..+.+|...|.++.|. |+ +.+|++++.|++|++||+....
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~-----~~~~~h~~~v~~~~~~-----~~~~~~~l~s~s~D~~v~iw~~~~~~ 232 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECV-----AVLNGHEGTVWSSDFD-----KTEGVFRLCSGSDDSTVRVWKYMGDD 232 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEE-----EEECCCSSCEEEEEEC-----CSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEE-----EEccCCCCcEEEEEec-----CCCCeeEEEEEeCCCeEEEEEecCCC
Confidence 9999999999999999999865321111 2246788999998887 77 6789999999999999997542
Q ss_pred cc-eeeEeEeec----cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCcccee-eecCCCC-CeEEEEEc
Q 010871 402 QG-YLTFRCSLK----LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVN-KLQGHRF-PVVAVAWN 474 (498)
Q Consensus 402 ~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~-~~~~h~~-~V~~l~~s 474 (498)
.. .....+... +...+. .+.|++ +.+|++|+.||.|++||..++....+. .+.+|.. .|.+++|+
T Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~--~v~~s~------~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~ 304 (330)
T 2hes_X 233 EDDQQEWVCEAILPDVHKRQVY--NVAWGF------NGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL 304 (330)
T ss_dssp TTSCEEEEEEEECCSCCSSCEE--EEEECT------TSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC
T ss_pred ccccceeEEeeecccccccceE--EEEEcC------CCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEe
Confidence 11 111111111 222222 234443 458999999999999999875423333 3467887 89999999
Q ss_pred C--CCCEEEEEeCCCeEEEeecCCC
Q 010871 475 H--GENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 475 p--~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
| ++++|++|+.||+|+||++++.
T Consensus 305 ~~~~~~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 305 ELNGKTILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp -----CCEEEEETTSEEEEEEC---
T ss_pred cCCCceEEEEecCCCcEEEEEeccC
Confidence 9 6899999999999999998763
No 14
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-39 Score=311.22 Aligned_cols=292 Identities=17% Similarity=0.225 Sum_probs=232.0
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC----ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCc
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP----KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKT 254 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~ 254 (498)
+...|.||++.|++|+|+|+++++||||+.||+|+|||+.... .....+.+|...|.+++|+|++++|++++.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 3457899999999999999567899999999999999997632 356778999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe--ecCCCeEEEEEcCCC--CEE
Q 010871 255 VRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL--VVDSEVTSMDHDHTG--QLL 329 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~~~~i~~l~~~~~~--~~l 329 (498)
|++|+............+. .+....+.+ .+.+|++|+.|+.+++||+......... .+...+..++|++++ .++
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred ceEEeecccceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 9999999998887777665 556677777 5578899999999999999876654443 477889999998765 578
Q ss_pred EEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeE
Q 010871 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRC 409 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 409 (498)
++++.|+.|++||+....... ...+|..+|.++.|+ |++++|++++.||.|++||+..... ..
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~-------~~~~h~~~v~~~~~s-----~~~~~l~s~s~Dg~i~iwd~~~~~~-----~~ 251 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKT-------NHIGHTGYLNTVTVS-----PDGSLCASGGKDGQAMLWDLNEGKH-----LY 251 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEE-------EECCCSSCEEEEEEC-----TTSSEEEEEETTCEEEEEETTTTEE-----EE
T ss_pred EEEcCCCEEEEEECCCCceee-------EecCCCCcEEEEEEC-----CCCCEEEEEeCCCeEEEEEeccCce-----ee
Confidence 899999999999987543221 236788899988876 9999999999999999999986422 11
Q ss_pred eeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCcccee---------eecCCCCCeEEEEEcCCCCEE
Q 010871 410 SLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVN---------KLQGHRFPVVAVAWNHGENLL 480 (498)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~---------~~~~h~~~V~~l~~sp~~~~l 480 (498)
.......+ ....|+| ++. +++++.|+.|++||+.+.. .+. ...+|...|++++|+|++++|
T Consensus 252 ~~~~~~~v--~~~~~~~-----~~~-~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 321 (340)
T 4aow_A 252 TLDGGDII--NALCFSP-----NRY-WLCAATGPSIKIWDLEGKI--IVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 321 (340)
T ss_dssp EEECSSCE--EEEEECS-----SSS-EEEEEETTEEEEEETTTTE--EEEEECCC-------CCCCCEEEEEECTTSSEE
T ss_pred eecCCceE--EeeecCC-----CCc-eeeccCCCEEEEEECCCCe--EEEeccccceeeeccCCCCCEEEEEECCCCCEE
Confidence 11222222 2234544 655 5566679999999998743 232 234788999999999999999
Q ss_pred EEEeCCCeEEEeecCCCC
Q 010871 481 ASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 481 ~s~~~Dg~i~iW~~~~~s 498 (498)
++|+.||.|+||++++|+
T Consensus 322 ~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 322 FAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEETTSCEEEEEEEC--
T ss_pred EEEeCCCEEEEEeCCCcC
Confidence 999999999999999874
No 15
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.2e-40 Score=314.49 Aligned_cols=285 Identities=14% Similarity=0.140 Sum_probs=218.8
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCC----------CCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCc
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD----------PPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKT 254 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~----------~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~ 254 (498)
.|...|.+++|+| +|.+|++++ |+++++||... ..........|...|.+++|+|++ .|++|+.||+
T Consensus 28 ~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred cccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 3466799999999 999999888 67788886321 011222233467889999999986 7889999999
Q ss_pred EEEEECCCCcEEEEE----ecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCC-
Q 010871 255 VRVWELTKGDCIRVI----YGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQ- 327 (498)
Q Consensus 255 v~iwd~~~~~~~~~~----~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~- 327 (498)
|+|||+.+++.+..+ .+| ..|.+++|+|+ +.+|++|+.|++|++||+++++++..+ .|...|.+++|++++.
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd-g~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSS-GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 999999998755443 355 47899999995 579999999999999999999999988 5899999999999985
Q ss_pred EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC-CCcEEEEEEcCCcEEEEEccccccceee
Q 010871 328 LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA-GGPVLLTCTQDGNLSFFSVALEIQGYLT 406 (498)
Q Consensus 328 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~-~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 406 (498)
+|++++.||.|++||++......... ...+...+.++.|. | ++.+|++|+.||.|++||++++...
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~-----p~~~~~l~sg~~dg~v~~wd~~~~~~~--- 250 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPASQIG-----CSAPGYLPTSLAWH-----PQQSEVFVFGDENGTVSLVDTKSTSCV--- 250 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCEEECC---------CCCEEEEEEC-----SSCTTEEEEEETTSEEEEEESCC--CC---
T ss_pred ceeeeccccccccccccccceeeeee-----cceeeccceeeeec-----CCCCcceEEeccCCcEEEEECCCCcEE---
Confidence 78999999999999997654332211 13344567777766 6 5678999999999999999865321
Q ss_pred EeEeeccCCceeeeEEEEeeeeeccCC-CEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCC-EEEEEe
Q 010871 407 FRCSLKLAPRVHSIRASFCPLLSLEKG-EYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGEN-LLASSD 484 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~ 484 (498)
.....+...+.. +.|+| ++ ++|++|+.|++|+|||+.+++ +..+.+|.+.|++|+|+|+++ +|+|||
T Consensus 251 -~~~~~h~~~v~~--v~fsp-----~g~~~lasgs~D~~i~vwd~~~~~---~~~~~~H~~~V~~v~~sp~~~~llas~s 319 (344)
T 4gqb_B 251 -LSSAVHSQCVTG--LVFSP-----HSVPFLASLSEDCSLAVLDSSLSE---LFRSQAHRDFVRDATWSPLNHSLLTTVG 319 (344)
T ss_dssp -EEEECCSSCEEE--EEECS-----SSSCCEEEEETTSCEEEECTTCCE---EEEECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred -EEEcCCCCCEEE--EEEcc-----CCCeEEEEEeCCCeEEEEECCCCc---EEEEcCCCCCEEEEEEeCCCCeEEEEEc
Confidence 111122233322 35665 77 689999999999999999854 456789999999999999986 678999
Q ss_pred CCCeEEEeecCCC
Q 010871 485 LYGIVIVWKRAKT 497 (498)
Q Consensus 485 ~Dg~i~iW~~~~~ 497 (498)
.||+|++|++.+.
T Consensus 320 ~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 320 WDHQVVHHVVPTE 332 (344)
T ss_dssp TTSCEEEEECCC-
T ss_pred CCCeEEEEECCCC
Confidence 9999999998753
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.8e-40 Score=315.97 Aligned_cols=286 Identities=15% Similarity=0.180 Sum_probs=219.7
Q ss_pred ecccccEEEEEEecCCCCEEEEEeC------CCcEEEEEcCCCC---ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCc
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGAS------DGTLTVCTVSDPP---KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKT 254 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~~------dg~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~ 254 (498)
.+|+..|++|+|+| +|++||+|+. |+.|++|+..+.. .......+|...|.+++|+|++. +++++.||+
T Consensus 39 ~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 39 ACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp -CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred ccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 46899999999999 9999999997 7789999887522 23344567999999999999985 567888999
Q ss_pred EEEEECCCCcEEE----EEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCC-
Q 010871 255 VRVWELTKGDCIR----VIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQ- 327 (498)
Q Consensus 255 v~iwd~~~~~~~~----~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~- 327 (498)
|+|||+.+++... ...+| ..|.+++|+|+ +.+|++|+.|+.|++||+++++.+..+ .|...|.+++|++++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 9999999886543 22344 57899999995 578999999999999999999999888 4889999999999885
Q ss_pred EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCC-CcEEEEEEcCCcEEEEEccccccceee
Q 010871 328 LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG-GPVLLTCTQDGNLSFFSVALEIQGYLT 406 (498)
Q Consensus 328 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~-~~~l~t~s~dg~i~iwd~~~~~~~~~~ 406 (498)
++++++.||.|++||++......... ...+...+.++.|+ |+ +.+|++|+.|+.|++||++......
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~-----~~~~~~~v~~v~~s-----p~~~~~la~g~~d~~i~~wd~~~~~~~~-- 263 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRID-----FCASDTIPTSVTWH-----PEKDDTFACGDETGNVSLVNIKNPDSAQ-- 263 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCC-----CTTCCSCEEEEEEC-----TTSTTEEEEEESSSCEEEEESSCGGGCE--
T ss_pred eeeeeccCCceEEEECCCCceeeeee-----eccccccccchhhh-----hcccceEEEeecccceeEEECCCCcEeE--
Confidence 78999999999999987654332211 24566678888776 76 5789999999999999998653221
Q ss_pred EeEeeccCCceeeeEEEEeeeeeccCC-CEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcC-CCCEEEEEe
Q 010871 407 FRCSLKLAPRVHSIRASFCPLLSLEKG-EYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH-GENLLASSD 484 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~ 484 (498)
....+...+. .+.|+| ++ ++|++|+.|++|+|||+.+++ ++ ...+|.+.|++|+|+| ++.+|+||+
T Consensus 264 --~~~~~~~~v~--~l~~sp-----~~~~~lasgs~D~~i~iwd~~~~~--~~-~~~~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 264 --TSAVHSQNIT--GLAYSY-----HSSPFLASISEDCTVAVLDADFSE--VF-RDLSHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp --EECCCSSCEE--EEEECS-----SSSCCEEEEETTSCEEEECTTSCE--EE-EECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred --EEeccceeEE--EEEEcC-----CCCCEEEEEeCCCEEEEEECCCCc--Ee-EECCCCCCEEEEEEeCCCCCEEEEEc
Confidence 1111222232 235665 65 689999999999999999854 34 4458999999999998 789999999
Q ss_pred CCCeEEEeecCC
Q 010871 485 LYGIVIVWKRAK 496 (498)
Q Consensus 485 ~Dg~i~iW~~~~ 496 (498)
.||+|++|++..
T Consensus 332 ~Dg~v~iW~~~~ 343 (357)
T 4g56_B 332 WDHKVLHHHLPS 343 (357)
T ss_dssp TTSCEEEEECC-
T ss_pred CCCeEEEEECCC
Confidence 999999999865
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.4e-39 Score=333.61 Aligned_cols=298 Identities=14% Similarity=0.159 Sum_probs=239.9
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC-CceeEEeecCCCCeEEEEEccCCCEEEEEeCC----Cc
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP-PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD----KT 254 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d----g~ 254 (498)
...|.+|.+.|++++|+| ++++||+|+.||+|+|||+.+. ......+.+|.+.|.+++|+|++++|++++.+ +.
T Consensus 52 ~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~ 130 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130 (611)
T ss_dssp CEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred CeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence 346789999999999999 9999999999999999999652 34456788999999999999999999998875 36
Q ss_pred EEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEE
Q 010871 255 VRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~ 332 (498)
|++|| .++.+..+.+|. .+.+++|+|++...|++|+.|++|++||..+++.+..+ .|...|.+++|+|++++|++|
T Consensus 131 v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 131 VFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 77776 566666777775 78899999987778999999999999999999888888 588999999999999999999
Q ss_pred cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeec
Q 010871 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLK 412 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 412 (498)
+.|+.|++||+.................+|...|.++.|+ |++++|++++.|++|++||+.++... ... .
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s-----pdg~~l~s~s~D~~v~lWd~~~~~~~---~~~--~ 278 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-----PDGTKIASASADKTIKIWNVATLKVE---KTI--P 278 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTTEEE---EEE--E
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC-----CCCCEEEEEeCCCeEEEEeCCCCcee---eee--c
Confidence 9999999999865433211100001113788999999887 99999999999999999999864221 111 1
Q ss_pred cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEe
Q 010871 413 LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVW 492 (498)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW 492 (498)
.............. ++..+++++.|+.|++|+...+. +...+.+|...|++++|+|++++|++++.||+|++|
T Consensus 279 ~~~~~~~~~~~~~~-----~~~~l~s~s~d~~i~~~~~~~~~--~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~W 351 (611)
T 1nr0_A 279 VGTRIEDQQLGIIW-----TKQALVSISANGFINFVNPELGS--IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 351 (611)
T ss_dssp CCSSGGGCEEEEEE-----CSSCEEEEETTCCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCccceeEEEEE-----cCCEEEEEeCCCcEEEEeCCCCC--cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 11111111111111 68899999999999999998743 577888999999999999999999999999999999
Q ss_pred ecCCC
Q 010871 493 KRAKT 497 (498)
Q Consensus 493 ~~~~~ 497 (498)
|+.++
T Consensus 352 d~~~~ 356 (611)
T 1nr0_A 352 DISTG 356 (611)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 98764
No 18
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.4e-39 Score=308.74 Aligned_cols=311 Identities=14% Similarity=0.208 Sum_probs=243.0
Q ss_pred CCcceeecceeeeecccccEEEEEEecC---CCCEEEEEeCCCcEEEEEcCCCCceeEEeec-----CCCCeEEEEEccC
Q 010871 171 EPAYSFVGMHCIFDQCKAAVTILKFGHM---SSDLLAYGASDGTLTVCTVSDPPKVIKLLNG-----HSKDVTDFDFSSN 242 (498)
Q Consensus 171 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~---~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~-----h~~~V~~l~~s~~ 242 (498)
.|+|++...+....+|.+.|++++|+|. ....+++++.++.|+|||+.+ ...+..+.. |...|.+++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~ 80 (366)
T 3k26_A 2 KCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS-QGEIRLLQSYVDADADENFYTCAWTYD 80 (366)
T ss_dssp ---CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG-GGCEEEEEEEECSCTTCCEEEEEEEEC
T ss_pred cceeEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC-CcEEEeeeeccccCCCCcEEEEEeccC
Confidence 3567776666788899999999999983 355677777778999999987 555555543 6688999999999
Q ss_pred ----CCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe----ec
Q 010871 243 ----NQYIASSSMDKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL----VV 313 (498)
Q Consensus 243 ----~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~ 313 (498)
+.+|++|+.||.|++||+.+++.+..+..| ..+.+++|+|.++.+|++|+.||.|++||+++++.+..+ .|
T Consensus 81 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 160 (366)
T 3k26_A 81 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 160 (366)
T ss_dssp TTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC
T ss_pred CCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc
Confidence 679999999999999999999999999976 478899999966789999999999999999999998887 48
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccccc---------------------ccccccCCCccceeeEEEe
Q 010871 314 DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRS---------------------HRHRTTGKRKCPVTTVQYR 372 (498)
Q Consensus 314 ~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------------~~~~~~~~~~~~i~~~~~~ 372 (498)
...|.+++|+|++++|++++.||.|++||++......... ........|...|.++.|.
T Consensus 161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (366)
T 3k26_A 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL 240 (366)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence 8999999999999999999999999999987543221100 0011123478888888875
Q ss_pred EeeEcCCCcEEEEEEcCCcEEEEEccccccce----------eeEeEeeccCCceeeeEEEEeeeeeccC--CCEEEEEe
Q 010871 373 SFSLLAGGPVLLTCTQDGNLSFFSVALEIQGY----------LTFRCSLKLAPRVHSIRASFCPLLSLEK--GEYIVAGS 440 (498)
Q Consensus 373 ~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~gs 440 (498)
+++|++++.|+.|++||+....... ........+...+..+ .|+| + +++|++|+
T Consensus 241 -------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~-----~~~~~~l~~~~ 306 (366)
T 3k26_A 241 -------GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM--RFSM-----DFWQKMLALGN 306 (366)
T ss_dssp -------TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCC--CCEE-----CTTSSEEEEEC
T ss_pred -------CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEE--EEcC-----CCCCcEEEEEe
Confidence 7799999999999999987643210 0111111122222222 4454 7 99999999
Q ss_pred CCCcEEEEECCCCCcc--ceeeecCC--CCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 441 EDSNVYFYDLAKPKHS--CVNKLQGH--RFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 441 ~dg~I~iwd~~~~~~~--~~~~~~~h--~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.||.|++||+.+++.. ....+.+| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 307 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 9999999999986421 34467777 79999999999999999999999999999864
No 19
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-38 Score=307.14 Aligned_cols=288 Identities=17% Similarity=0.282 Sum_probs=243.0
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
..|.+|.+.|++++|+| ++++|++|+.||.|+|||+.+ ++....+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 26 ~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCC-chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 46899999999999999 999999999999999999988 7888999999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCC-----CcEEEEEcCCCcEE-----------EEe-ecCC--CeEEEE
Q 010871 261 TKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNAN-----KEITVFNFSTGRII-----------KKL-VVDS--EVTSMD 321 (498)
Q Consensus 261 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~-----------~~~-~~~~--~i~~l~ 321 (498)
.+++.+..+.....+.++.|+|+ +.++++++.+ +.|.+||+..+... ..+ .+.. .+.+++
T Consensus 104 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 104 SNGQCVATWKSPVPVKRVEFSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECTT-SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred CCCcEEEEeecCCCeEEEEEccC-CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 99999999998789999999995 5688888888 99999999766421 122 2333 899999
Q ss_pred EcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccc
Q 010871 322 HDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEI 401 (498)
Q Consensus 322 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~ 401 (498)
|+|++++|++++.+|.|++||++...... .....|...|.++.|. |++.+|++++.|+.|++||+....
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~-----~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYV------DSIDLHEKSISDMQFS-----PDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTTTEEE------EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCC
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCcEeE------EEEecCCCceeEEEEC-----CCCCEEEEecCCceEEEEECCCCc
Confidence 99999999999999999999997532211 1235677888888877 999999999999999999998642
Q ss_pred cceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC--------------cEEEEECCCCCccceeeecCCCCC
Q 010871 402 QGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS--------------NVYFYDLAKPKHSCVNKLQGHRFP 467 (498)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg--------------~I~iwd~~~~~~~~~~~~~~h~~~ 467 (498)
. ......... ...+.|+| ++.++++++.++ .+++||+.+++ .+..+.+|...
T Consensus 252 ~-----~~~~~~~~~--~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~ 317 (369)
T 3zwl_B 252 V-----LKKYETDCP--LNTAVITP-----LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE--EIGRVQGHFGP 317 (369)
T ss_dssp E-----EEEEECSSC--EEEEEECS-----SSSEEEEEECCC-------------CEEEEEETTTCC--EEEEEECCSSC
T ss_pred e-----eeeecCCCC--ceeEEecC-----CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc--chhheecccCc
Confidence 2 111112222 22335555 999999999988 89999999854 68888999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 468 VVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 468 V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
|++++|+|++++|++++.||.|++|++++
T Consensus 318 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 318 LNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 99999999999999999999999999875
No 20
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.2e-39 Score=321.31 Aligned_cols=298 Identities=15% Similarity=0.172 Sum_probs=226.1
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC-ceeEEeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEE
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP-KVIKLLNGHSKDVTDFDFSS-NNQYIASSSMDKTVRVW 258 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iw 258 (498)
....+|...|+||+|+|.++.+||+|+.||.|+|||+.+.. .....+.+|.+.|++|+|+| ++.+|++|+.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 34577899999999999777899999999999999998633 23445678999999999998 68899999999999999
Q ss_pred ECCCCcEEEEEecCC---CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCC-EEEEEc
Q 010871 259 ELTKGDCIRVIYGVS---SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQ-LLFCGD 333 (498)
Q Consensus 259 d~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~-~l~~~~ 333 (498)
|++++........+. .+.+++|+|+ +.+|++|+.||.|++||++.. .+..+ .|...|.+++|+|++. +|++|+
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred eccCCceeEEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEEEec
Confidence 998765443333332 4568999994 579999999999999999754 44444 5889999999999986 788999
Q ss_pred CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeecc
Q 010871 334 AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKL 413 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 413 (498)
.|+.|++||++........ .....|...|.++.|+ |++.+|++++.||.|++||+................
T Consensus 271 ~d~~v~iwd~~~~~~~~~~----~~~~~h~~~v~~~~~s-----pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASF----LYSLPHRHPVNAACFS-----PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp TTSBCCEEETTTCCSSSCC----SBCCBCSSCEEECCBC-----TTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred CcceeeEEecccccccceE----EEeeeccccccceeEC-----CCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 9999999999765433221 1135688889988876 999999999999999999998653322221111122
Q ss_pred CCceeeeEEEEeeeeeccCCCEEEEEe------------CCCcEEEEECCCCCccceeee-cCCCCCeEEE-EEcCCCCE
Q 010871 414 APRVHSIRASFCPLLSLEKGEYIVAGS------------EDSNVYFYDLAKPKHSCVNKL-QGHRFPVVAV-AWNHGENL 479 (498)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~l~~gs------------~dg~I~iwd~~~~~~~~~~~~-~~h~~~V~~l-~~sp~~~~ 479 (498)
......+...|++ ++.++++++ .++.|++||..+++ .+..+ .+|...|.++ +|+|+|.+
T Consensus 342 ~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~--~~~~l~~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 342 FQHLTPIKAAWHP-----RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK--MMCQLYDPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp CSSSCCCBCEECS-----SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC--EEEEECCSSCCCCCCEEEECTTSSC
T ss_pred cccceeEEEEEcC-----CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc--EEEEEeCCCCCcEEEEEEECCCCCE
Confidence 2223334445554 555555543 34579999999865 45554 4688889887 69999999
Q ss_pred EEEEeCCCeEEEeecCCC
Q 010871 480 LASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 480 l~s~~~Dg~i~iW~~~~~ 497 (498)
|++|+ |+.|+||+++++
T Consensus 415 lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 415 LASAM-GYHILIWSQQEA 431 (435)
T ss_dssp EEEEC-SSEEEECCCC--
T ss_pred EEEEc-CCcEEEEECCcC
Confidence 99876 889999999875
No 21
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.3e-38 Score=308.63 Aligned_cols=298 Identities=15% Similarity=0.207 Sum_probs=233.9
Q ss_pred eeeeecccccEEEEEEecCCC-CEEEEEeCCCcEEEEEcCCCCceeEEee--cCCCCeEEEEEcc-CCCEEEEEeCCCcE
Q 010871 180 HCIFDQCKAAVTILKFGHMSS-DLLAYGASDGTLTVCTVSDPPKVIKLLN--GHSKDVTDFDFSS-NNQYIASSSMDKTV 255 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~-~~lasg~~dg~i~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~-~~~~l~s~s~dg~v 255 (498)
...+.+|.+.|++++|+| ++ .+||+|+.||.|+|||+.+ ......+. +|...|.+++|+| ++.+|++++.|+.|
T Consensus 66 ~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHP-THPTTVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEECCCSSCEEEEEECS-SCTTEEEEEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred EEeccCCCCCEEEEEECC-CCCCEEEEEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 446789999999999999 66 9999999999999999987 55555554 7999999999999 67899999999999
Q ss_pred EEEECCCCcEEEEEecC----CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCC-EE
Q 010871 256 RVWELTKGDCIRVIYGV----SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQ-LL 329 (498)
Q Consensus 256 ~iwd~~~~~~~~~~~~~----~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~-~l 329 (498)
++||+.+ ..+..+..+ ..+.+++|+|+ +.+|++|+.|+.|++||+ +++.+..+ .|...|.+++|+|+++ +|
T Consensus 144 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 144 TLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVS-RQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEEETTS-CEEEEEECCCCSSCCEEEEEEETT-TTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEE
T ss_pred EEEECCC-CceEEEeccCCCCCCeEEEEECCC-CCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEE
Confidence 9999996 555555543 45889999995 579999999999999999 46666666 5889999999999999 99
Q ss_pred EEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC-CCcEEEEEEcCCcEEEEEccccccceeeEe
Q 010871 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA-GGPVLLTCTQDGNLSFFSVALEIQGYLTFR 408 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~-~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~ 408 (498)
++++.|+.|++||++.......... ...|...|.++.|. | ++.+|++++.|+.|++||++..........
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~s-----~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIA----EMPHEKPVNAAYFN-----PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEE----EEECSSCEEEEEEC-----TTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred EEEeCCCEEEEEeCCCCCcccceEE----EecCCCceEEEEEc-----CCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence 9999999999999986432111111 12577888888887 8 999999999999999999987543222221
Q ss_pred EeeccCCceeeeEEEEee------eeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC--CCCCeEEEEEcCCCCEE
Q 010871 409 CSLKLAPRVHSIRASFCP------LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG--HRFPVVAVAWNHGENLL 480 (498)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l 480 (498)
...........+...|+| +.+++++++ +|+.||.|++||+.+++ ++..+.+ |...+..++|+|++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~--~~~~l~~~~~~~~~~~~~~s~~g~~l 367 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG--LVHQLRDPNAAGIISLNKFSPTGDVL 367 (383)
T ss_dssp CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC--EEEEECBTTBCSCCCEEEECTTSSEE
T ss_pred ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc--eeeeecCCCCCceEEEEEEecCccEE
Confidence 111111122223334443 334457766 77899999999999854 5777776 56778888999999999
Q ss_pred EEEeCCCeEEEeecCC
Q 010871 481 ASSDLYGIVIVWKRAK 496 (498)
Q Consensus 481 ~s~~~Dg~i~iW~~~~ 496 (498)
++|+ ||.|+||++++
T Consensus 368 ~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 368 ASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEE-TTEEEEEECC-
T ss_pred EEec-CCcEEEEecCC
Confidence 9997 99999999976
No 22
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.7e-38 Score=329.66 Aligned_cols=289 Identities=17% Similarity=0.239 Sum_probs=232.3
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC----ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP----KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTV 255 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v 255 (498)
...+.+|++.|++|+|+|+++++|++|+.||+|+||++.... .....+.+|...|.+++|+|++++|++|+.||+|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 446899999999999999667899999999999999997532 3456789999999999999999999999999999
Q ss_pred EEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe----ecCCCeEEEEEcCCC--CE
Q 010871 256 RVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL----VVDSEVTSMDHDHTG--QL 328 (498)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~~~~i~~l~~~~~~--~~ 328 (498)
+|||+.+++.+..+.+|. .|.+++|+|+ +.+|++|+.|++|++||+......... .|...|.+++|+|++ ..
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLD-NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 999999999999998885 7889999995 578899999999999998765444332 367789999999987 58
Q ss_pred EEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEe
Q 010871 329 LFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFR 408 (498)
Q Consensus 329 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~ 408 (498)
|++|+.|+.|++||++..... ....+|...|.++.|+ |++++|++++.||.|++||+..+.. .
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~-------~~~~~h~~~v~~v~~s-----pdg~~l~sg~~Dg~i~iwd~~~~~~-----~ 596 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLR-------STLAGHTGYVSTVAVS-----PDGSLCASGGKDGVVLLWDLAEGKK-----L 596 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEE-------EEECCCSSCEEEEEEC-----TTSSEEEEEETTSBCEEEETTTTEE-----E
T ss_pred EEEEeCCCeEEEEECCCCcEE-------EEEcCCCCCEEEEEEe-----CCCCEEEEEeCCCeEEEEECCCCce-----E
Confidence 999999999999998754322 1236788899988887 9999999999999999999986522 1
Q ss_pred EeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCC-------------------CCCeE
Q 010871 409 CSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGH-------------------RFPVV 469 (498)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h-------------------~~~V~ 469 (498)
. ..........++|+| ++.++++++ ++.|++||+.++. .+..+..+ ...++
T Consensus 597 ~--~~~~~~~v~~~~~sp-----~~~~l~~~~-~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (694)
T 3dm0_A 597 Y--SLEANSVIHALCFSP-----NRYWLCAAT-EHGIKIWDLESKS--IVEDLKVDLKAEAEKADNSGPAATKRKVIYCT 666 (694)
T ss_dssp E--CCBCSSCEEEEEECS-----SSSEEEEEE-TTEEEEEETTTTE--EEEEECCCCC----------------CCCCEE
T ss_pred E--EecCCCcEEEEEEcC-----CCcEEEEEc-CCCEEEEECCCCC--ChhhhccccccccccccccccccCCceeEEee
Confidence 1 111122222335555 888887776 4569999999854 34444322 12378
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 470 AVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 470 ~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+++|+|+|++|++|+.||.|+||++.+
T Consensus 667 ~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 667 SLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 999999999999999999999999864
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.3e-38 Score=295.50 Aligned_cols=254 Identities=18% Similarity=0.308 Sum_probs=214.0
Q ss_pred ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEE
Q 010871 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVF 300 (498)
Q Consensus 222 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iw 300 (498)
...+++.+|.+.|.+++|+|++++|++++.||+|++||+.+++.+..+..+. .+.++.|+|+ +++|++|+.|+.|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC-CCEEEEECCCCEEEEE
Confidence 4567899999999999999999999999999999999999999999998875 6889999994 5799999999999999
Q ss_pred EcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC-
Q 010871 301 NFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA- 378 (498)
Q Consensus 301 d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~- 378 (498)
|+.+++.+..+ .|...|.+++|+|++.+|++|+.||.|++||++...... ....+|...|.++.|. |
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~------~~~~~h~~~v~~v~~~-----p~ 151 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE------QTFEGHEHFVMCVAFN-----PK 151 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE------EEECCCCSCEEEEEEC-----TT
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh------hhhcccCCcEEEEEEC-----CC
Confidence 99999998888 488999999999999999999999999999987532211 1236788899999887 7
Q ss_pred CCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccce
Q 010871 379 GGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCV 458 (498)
Q Consensus 379 ~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~ 458 (498)
++..|++|+.|+.|++||+....... .........+..+ .|.| .+++.+|++|+.|+.|++||+.++ .++
T Consensus 152 ~~~~l~sgs~D~~v~iwd~~~~~~~~---~~~~~~~~~v~~~--~~~~---~~~~~~l~s~s~D~~i~iWd~~~~--~~~ 221 (304)
T 2ynn_A 152 DPSTFASGCLDRTVKVWSLGQSTPNF---TLTTGQERGVNYV--DYYP---LPDKPYMITASDDLTIKIWDYQTK--SCV 221 (304)
T ss_dssp CTTEEEEEETTSEEEEEETTCSSCSE---EEECCCTTCEEEE--EECC---STTCCEEEEEETTSEEEEEETTTT--EEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccc---eeccCCcCcEEEE--EEEE---cCCCCEEEEEcCCCeEEEEeCCCC--ccc
Confidence 67899999999999999997543221 1111122223332 3332 237889999999999999999984 478
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 459 NKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 459 ~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
..+.+|...|.+++|+|++++|++|+.||+|++||+.++
T Consensus 222 ~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred eeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 899999999999999999999999999999999998764
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.8e-38 Score=307.10 Aligned_cols=291 Identities=14% Similarity=0.163 Sum_probs=238.2
Q ss_pred cceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc------eeEEeecCCCCeEEEEEccC----C---C
Q 010871 178 GMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK------VIKLLNGHSKDVTDFDFSSN----N---Q 244 (498)
Q Consensus 178 ~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~s~~----~---~ 244 (498)
.....+.+|.+.|++++|+| ++|++|+.||.|+||++.+ .. ....+.+|...|.+++|+|+ + +
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKL-LDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBC-CTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCC-cccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence 34667899999999999987 7999999999999999998 44 68888899999999999999 9 9
Q ss_pred EEEEEeCCCcEEEEECCCCcE-----EEEEecC------CCeEEEEEE----cCCCcE-EEEEeCCCcEEEEEcCC----
Q 010871 245 YIASSSMDKTVRVWELTKGDC-----IRVIYGV------SSQLCIRFH----PVNNNF-LSVGNANKEITVFNFST---- 304 (498)
Q Consensus 245 ~l~s~s~dg~v~iwd~~~~~~-----~~~~~~~------~~v~~i~~~----~~~~~~-l~~g~~dg~i~iwd~~~---- 304 (498)
+|++++.||.|++||+.+++. +..+..+ ..+.+++|+ |++ .+ |++++.||.|++||+.+
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccc
Confidence 999999999999999998887 8888877 789999999 855 56 99999999999999998
Q ss_pred --CcEEE-----Eee--------cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCC---C---c
Q 010871 305 --GRIIK-----KLV--------VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGK---R---K 363 (498)
Q Consensus 305 --~~~~~-----~~~--------~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~---~ 363 (498)
++.+. .+. +...|.+++|+|++ +|++++.+|.|++||++....... ... | .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~h~~~~ 233 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN-------FESQHSMINNS 233 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE-------EECCC---CCC
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEE-------EeccccccccC
Confidence 65554 442 57889999999999 999999999999999975432211 133 6 7
Q ss_pred cceeeEEEeEeeEcCCCcEEEEEEcC---CcEEEEEccccccceeeEeEeec------------cCCceeeeEEEEeeee
Q 010871 364 CPVTTVQYRSFSLLAGGPVLLTCTQD---GNLSFFSVALEIQGYLTFRCSLK------------LAPRVHSIRASFCPLL 428 (498)
Q Consensus 364 ~~i~~~~~~~~~~s~~~~~l~t~s~d---g~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 428 (498)
..|.++.|. |++.+|++++.| |.|++||+..... ....... +...+ ..+.|+|
T Consensus 234 ~~i~~i~~~-----~~~~~l~~~~~d~~~g~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~-- 301 (397)
T 1sq9_A 234 NSIRSVKFS-----PQGSLLAIAHDSNSFGCITLYETEFGER---IGSLSVPTHSSQASLGEFAHSSWV--MSLSFND-- 301 (397)
T ss_dssp CCEEEEEEC-----SSTTEEEEEEEETTEEEEEEEETTTCCE---EEEECBC--------CCBSBSSCE--EEEEECS--
T ss_pred CccceEEEC-----CCCCEEEEEecCCCCceEEEEECCCCcc---cceeccCcccccccccccccCCcE--EEEEECC--
Confidence 788888877 999999999999 9999999985421 1111100 22222 2235555
Q ss_pred eccCCCEEEEEeCCCcEEEEECCCCCccceeeec------CC---------------CCCeEEEEEcCCC----------
Q 010871 429 SLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ------GH---------------RFPVVAVAWNHGE---------- 477 (498)
Q Consensus 429 ~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~------~h---------------~~~V~~l~~sp~~---------- 477 (498)
++++|++|+.||.|++||+.++ .++..+. +| ...|++++|+|++
T Consensus 302 ---~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 302 ---SGETLCSAGWDGKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp ---SSSEEEEEETTSEEEEEETTTT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred ---CCCEEEEEeCCCeEEEEEcCCC--ceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 9999999999999999999984 4677787 77 9999999999998
Q ss_pred CEEEEEeCCCeEEEeecCCCC
Q 010871 478 NLLASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 478 ~~l~s~~~Dg~i~iW~~~~~s 498 (498)
++|++++.||.|++|+++++.
T Consensus 377 ~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CEEEEEETTTEEEEEEEEC--
T ss_pred ceEEEecCCCcEEEEEcCCCC
Confidence 799999999999999998763
No 25
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=301.88 Aligned_cols=305 Identities=14% Similarity=0.192 Sum_probs=243.3
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEe-------------ecCCCCeEEEEEcc-CCC
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLL-------------NGHSKDVTDFDFSS-NNQ 244 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~-------------~~h~~~V~~l~~s~-~~~ 244 (498)
....+.+|.+.|++++|+|.++++||+|+.||.|+|||+.+. .....+ .+|...|.+++|+| ++.
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCC-SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCC-cccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 345678899999999999977899999999999999999873 322222 25999999999999 778
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCC--cEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEE
Q 010871 245 YIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNN--NFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMD 321 (498)
Q Consensus 245 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~ 321 (498)
+|++++.||.|++||+.+++.+..+.....+.++.+.+.+. .++++++.+|.|++||+++++.+..+. |...|.+++
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 99999999999999999999999999888999999998643 489999999999999999999888884 889999999
Q ss_pred EcCCCC-EEEEEcCCCeEEEEEccCCccccccc---------ccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCc
Q 010871 322 HDHTGQ-LLFCGDAQGCIYSISMESHSGALSRS---------HRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGN 391 (498)
Q Consensus 322 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~ 391 (498)
|+|++. +|++|+.||.|++||++......... ........|...|.++.|. |++++|++++.||.
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT-----SDGLHLLTVGTDNR 268 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC-----TTSSEEEEEETTSC
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc-----CCCCEEEEecCCCe
Confidence 999998 68999999999999997654322211 1111225678888888887 99999999999999
Q ss_pred EEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEE
Q 010871 392 LSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAV 471 (498)
Q Consensus 392 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l 471 (498)
|++||+............. ...........+.. ..+..+++++.++.|++||+.++ .++..+.+|...|+++
T Consensus 269 i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~v~~~ 340 (408)
T 4a11_B 269 MRLWNSSNGENTLVNYGKV--CNNSKKGLKFTVSC----GCSSEFVFVPYGSTIAVYTVYSG--EQITMLKGHYKTVDCC 340 (408)
T ss_dssp EEEEETTTCCBCCCCCCCC--CCCCSSCCCCEECC----SSSSCEEEEEETTEEEEEETTTC--CEEEEECCCSSCEEEE
T ss_pred EEEEECCCCccceeccccc--cccccccceeEEec----CCCceEEEEecCCEEEEEECcCC--cceeeeccCCCeEEEE
Confidence 9999998653321111000 01111111111111 24566777788999999999985 4688899999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 472 AWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 472 ~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
+|+|++++|++|+.||.|++|++++.
T Consensus 341 ~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 341 VFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEETTTTEEEEEETTSCEEEEEECC-
T ss_pred EEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 99999999999999999999999764
No 26
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.7e-37 Score=315.87 Aligned_cols=279 Identities=21% Similarity=0.338 Sum_probs=234.6
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
..+.+|.+.|++++|+| ++.+|++++.||.|++||... .....+.+|...|.+++|+|++++|++++.||.|++||.
T Consensus 297 ~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG--QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC--CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence 45789999999999999 999999999999999999864 566778899999999999999999999999999999995
Q ss_pred CCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 261 TKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 261 ~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
+++.+..+..|. .+.+++|+|+ +.+|++++.|+.|++||. +++.+..+ .|...|.+++|+|++++|++++.|+.|
T Consensus 374 -~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v 450 (577)
T 2ymu_A 374 -NGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450 (577)
T ss_dssp -TCCEEEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred -CCCEEEEecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence 567788888774 7889999995 578889999999999996 56666666 588999999999999999999999999
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCcee
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVH 418 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
++|+.... .. .....|...|.++.|+ |++++|++++.|+.|++||.... .......+...+.
T Consensus 451 ~~w~~~~~---~~-----~~~~~~~~~v~~~~~s-----pd~~~las~~~d~~i~iw~~~~~-----~~~~~~~h~~~v~ 512 (577)
T 2ymu_A 451 KLWNRNGQ---LL-----QTLTGHSSSVRGVAFS-----PDGQTIASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVR 512 (577)
T ss_dssp EEEETTSC---EE-----EEEECCSSCEEEEEEC-----TTSCEEEEEETTSEEEEEETTSC-----EEEEEECCSSCEE
T ss_pred EEEECCCC---EE-----EEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCEEEEEcCCCC-----EEEEEeCCCCCEE
Confidence 99996432 11 1235688888888876 99999999999999999996432 1111122233333
Q ss_pred eeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 419 SIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
. ++|+| +|++|++++.||.|++||.. ..++..+.+|.+.|++++|+||+++|+|++.||+|++||
T Consensus 513 ~--l~~s~-----dg~~l~s~~~dg~v~lwd~~---~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 513 G--VAFSP-----DGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp E--EEECT-----TSSCEEEEETTSEEEEECTT---SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred E--EEEcC-----CCCEEEEEECcCEEEEEeCC---CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 2 25555 99999999999999999964 346888999999999999999999999999999999997
No 27
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=297.52 Aligned_cols=296 Identities=12% Similarity=0.167 Sum_probs=232.0
Q ss_pred eeeeecccccEEEEEEecCCC-CEEEEEeC---CCcEEEEEcCCCCcee-EEeecCCCCeEEEEEccC---CCEEEEEeC
Q 010871 180 HCIFDQCKAAVTILKFGHMSS-DLLAYGAS---DGTLTVCTVSDPPKVI-KLLNGHSKDVTDFDFSSN---NQYIASSSM 251 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~-~~lasg~~---dg~i~iwd~~~~~~~~-~~~~~h~~~V~~l~~s~~---~~~l~s~s~ 251 (498)
..++.+|.+.|++++|+| ++ .++++|+. ||.|+|||+.+ ++.. ....+|...|.+++|+|+ +.+|++++.
T Consensus 11 ~~~~~~h~~~v~~~~~~p-~~~~l~~~~s~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVP-CSAKFVTMGNFARGTGVIQLYEIQH-GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp EEEEEECSSCEEEEEECT-TSSEEEEEEC--CCCEEEEEEEECS-SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred hhhccCCCCceEEEEEcC-CCceEEEecCccCCCcEEEEEeCCC-CcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 446788999999999999 66 56667776 99999999997 4443 334479999999999998 699999999
Q ss_pred CCcEEEEECCCCc-EEEEEecCC-CeEEEEEEc-----CCCcEEEEEeCCCcEEEEEcCCCc-EEEEee-c----CCCeE
Q 010871 252 DKTVRVWELTKGD-CIRVIYGVS-SQLCIRFHP-----VNNNFLSVGNANKEITVFNFSTGR-IIKKLV-V----DSEVT 318 (498)
Q Consensus 252 dg~v~iwd~~~~~-~~~~~~~~~-~v~~i~~~~-----~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~-~----~~~i~ 318 (498)
||.|++||+.+++ .+..+..|. .+.++.|.+ .++.+|++++.||.|++||+++++ .+..+. + ...+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999987 888888775 677886643 256789999999999999999886 566653 2 33788
Q ss_pred EEE----EcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC---CCcEEEEEEcCCc
Q 010871 319 SMD----HDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA---GGPVLLTCTQDGN 391 (498)
Q Consensus 319 ~l~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~---~~~~l~t~s~dg~ 391 (498)
+++ |++++++|++++.+|.|++||++...... ...|...|.++.|. | ++.+|++++.||.
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------~~~~~~~v~~~~~~-----~~~~~~~~l~~~~~dg~ 235 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW--------ETNIKNGVCSLEFD-----RKDISMNKLVATSLEGK 235 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE--------EEECSSCEEEEEES-----CSSSSCCEEEEEESTTE
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceee--------ecCCCCceEEEEcC-----CCCCCCCEEEEECCCCe
Confidence 888 78899999999999999999997654311 14566778888776 7 8999999999999
Q ss_pred EEEEEccccccceeeE-eEeeccCCceeeeEEEEeeeeeccCCC-EEEEEeCCCcEEEEECCCCCc--------------
Q 010871 392 LSFFSVALEIQGYLTF-RCSLKLAPRVHSIRASFCPLLSLEKGE-YIVAGSEDSNVYFYDLAKPKH-------------- 455 (498)
Q Consensus 392 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~dg~I~iwd~~~~~~-------------- 455 (498)
|++||++......... .....+...+. .+.|+| ++. +|++|+.||.|++||+..+..
T Consensus 236 i~i~d~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~ 308 (357)
T 3i2n_A 236 FHVFDMRTQHPTKGFASVSEKAHKSTVW--QVRHLP-----QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA 308 (357)
T ss_dssp EEEEEEEEEETTTEEEEEEEECCSSCEE--EEEEET-----TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCC
T ss_pred EEEEeCcCCCcccceeeeccCCCcCCEE--EEEECC-----CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccc
Confidence 9999998653321111 11112222222 235555 888 899999999999999986432
Q ss_pred ---cceeeecCCCCCeEEEEEcCCCCEEE-EEeCCCeEEEeecCCC
Q 010871 456 ---SCVNKLQGHRFPVVAVAWNHGENLLA-SSDLYGIVIVWKRAKT 497 (498)
Q Consensus 456 ---~~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~i~iW~~~~~ 497 (498)
..+..+.+|...|++++|+|++++|+ +++.||.|+||++.+.
T Consensus 309 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 309 GSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 35777889999999999999999888 8999999999999864
No 28
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.6e-36 Score=293.89 Aligned_cols=295 Identities=16% Similarity=0.222 Sum_probs=232.9
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc--eeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK--VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
++..|.++|++++|+| ++++||+|+.||.|+|||+.+ .+ ....+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 3 ~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EEESCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eecccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCC-CcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 4566899999999999 999999999999999999987 55 7888999999999999999999999999999999999
Q ss_pred CCCCcEEEEEe--cC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE---EEEe--ecCCCeEEEEEcCCCCEEEE
Q 010871 260 LTKGDCIRVIY--GV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI---IKKL--VVDSEVTSMDHDHTGQLLFC 331 (498)
Q Consensus 260 ~~~~~~~~~~~--~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~--~~~~~i~~l~~~~~~~~l~~ 331 (498)
+.+++....+. .+ ..+.+++|+|+ +.+|++++.|+.|++||+..++. ...+ .|...|.+++|+|++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 99887655543 33 57889999995 57899999999999999988763 2333 36789999999999999999
Q ss_pred EcCCCeEEEEEccCCccc-----------ccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 332 GDAQGCIYSISMESHSGA-----------LSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
++.||.|++||+...... ............|...|.++.|. |++.+|++++.|+.|++||+...
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-----ANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-----SSSSEEEEEETTTEEEEEEGGGT
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC-----CCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999997532110 00011112235677888888877 99999999999999999999865
Q ss_pred ccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC--CCccce--------------------
Q 010871 401 IQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK--PKHSCV-------------------- 458 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~--~~~~~~-------------------- 458 (498)
... .........+ ..+.|+| ++.+|++| .|+.|++|++.+ +...++
T Consensus 235 ~~~----~~~~~~~~~v--~~~~~~~-----~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (372)
T 1k8k_C 235 MAV----ATLASETLPL--LAVTFIT-----ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF 302 (372)
T ss_dssp TEE----EEEECSSCCE--EEEEEEE-----TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHH
T ss_pred cee----EEEccCCCCe--EEEEEec-----CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhh
Confidence 321 1111122222 2336666 89988887 899999999987 321110
Q ss_pred ----------------eee-cCCCCCeEEEEEc-CCC---CEEEEEeCCCeEEEeecCC
Q 010871 459 ----------------NKL-QGHRFPVVAVAWN-HGE---NLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 459 ----------------~~~-~~h~~~V~~l~~s-p~~---~~l~s~~~Dg~i~iW~~~~ 496 (498)
..+ .+|...|++++|+ ++| .+|+||+.||.|++|++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 303 QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp HHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred hhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 233 4899999999976 666 9999999999999999854
No 29
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.3e-36 Score=288.56 Aligned_cols=281 Identities=11% Similarity=0.170 Sum_probs=230.9
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC--ceeEEee--cCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP--KVIKLLN--GHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~--~~~~~~~--~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
..+|.+.|++++|+| ++++|++++ ||.|++|++.+.. .....+. +|...|.+++|+|++++|++++.||.|++|
T Consensus 47 ~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 47 TLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 457999999999999 999999999 9999999998632 2334444 799999999999999999999999999999
Q ss_pred ECCCCc--EEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcC
Q 010871 259 ELTKGD--CIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 259 d~~~~~--~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
|+.+++ ....+..+. .+.+++|+| ++.++++++.||.|++||+++++.+..+. |...+.+++|+|++++|++++.
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 999887 556666664 688999999 45788999999999999999999888884 7889999999999999999999
Q ss_pred CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccC
Q 010871 335 QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLA 414 (498)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 414 (498)
||.|++||++....... ..+...+.++.|+ |++++|++++.|+.|++||+..... .....+.
T Consensus 204 dg~i~~~d~~~~~~~~~--------~~~~~~v~~~~~s-----~~~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~ 265 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQ--------HDFTSQIFSLGYC-----PTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHE 265 (337)
T ss_dssp TSEEEEEETTTTEEEEE--------EECSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTSSCE-----EEECCCS
T ss_pred CCcEEEEECCCCceEee--------ecCCCceEEEEEC-----CCCCEEEEEcCCCcEEEEECCCCCe-----EEEcCCc
Confidence 99999999875432221 2345567777665 9999999999999999999986421 1111222
Q ss_pred CceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 415 PRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
..+ ..+.|+| ++++|++++.||.|++||+.+++ .+ ....|...|.+++|+|++++|++++.||.|++|++
T Consensus 266 ~~v--~~~~~~~-----~~~~l~~~~~dg~i~~~~~~~~~--~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 266 SCV--LSLKFAY-----CGKWFVSTGKDNLLNAWRTPYGA--SI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCE--EEEEECT-----TSSEEEEEETTSEEEEEETTTCC--EE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred cce--eEEEECC-----CCCEEEEecCCCcEEEEECCCCe--EE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 222 2235555 99999999999999999999865 23 33458899999999999999999999999999996
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-36 Score=297.11 Aligned_cols=284 Identities=14% Similarity=0.227 Sum_probs=236.2
Q ss_pred ecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG 263 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 263 (498)
.+|.+.|++++|+| ++++|++|+.||.|++||. + +.....+.+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 105 ~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 105 GKTTNQVTCLAWSH-DGNSIVTGVENGELRLWNK-T-GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181 (425)
T ss_dssp ---CBCEEEEEECT-TSSEEEEEETTSCEEEEET-T-SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred cCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeC-C-CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence 34788999999999 9999999999999999993 3 6788889999999999999999999999999999999999999
Q ss_pred cEEEEEecCCC----------------eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCC
Q 010871 264 DCIRVIYGVSS----------------QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTG 326 (498)
Q Consensus 264 ~~~~~~~~~~~----------------v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~ 326 (498)
+.+..+..+.. +.++.|+++ ..+++++.+|.|++||+.+++.+..+ .+...|.+++|+|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp EEEEEECCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred cEEEEeeccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 99988877653 778999984 46888999999999999999888777 578899999999999
Q ss_pred CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceee
Q 010871 327 QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLT 406 (498)
Q Consensus 327 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~ 406 (498)
++|++++.||.|++||++...... ....|...|.++.|. +++ ++++++.|+.|++||+.....
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~~~~~-------~~~~~~~~i~~~~~~-----~~~-~l~~~~~d~~i~i~d~~~~~~---- 322 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNGNSQN-------CFYGHSQSIVSASWV-----GDD-KVISCSMDGSVRLWSLKQNTL---- 322 (425)
T ss_dssp TEEEEEETTSCEEEECSSSBSCSE-------EECCCSSCEEEEEEE-----TTT-EEEEEETTSEEEEEETTTTEE----
T ss_pred CEEEEEcCCCEEEEEECCCCccce-------EecCCCccEEEEEEC-----CCC-EEEEEeCCCcEEEEECCCCcE----
Confidence 999999999999999987543222 125677888888887 888 999999999999999975421
Q ss_pred EeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC------------------ccceeeecCCCC--
Q 010871 407 FRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK------------------HSCVNKLQGHRF-- 466 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~------------------~~~~~~~~~h~~-- 466 (498)
......+...+. .+.|+| ++++|++++.||.|++||+.++. ..++..+.+|..
T Consensus 323 ~~~~~~~~~~i~--~~~~s~-----~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (425)
T 1r5m_A 323 LALSIVDGVPIF--AGRISQ-----DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND 395 (425)
T ss_dssp EEEEECTTCCEE--EEEECT-----TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred eEecccCCccEE--EEEEcC-----CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence 111111222222 235555 99999999999999999998732 016788889976
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 467 PVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 467 ~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.|++++|+|++++|++++.||.|++|+++.
T Consensus 396 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 396 YIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp CEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred ceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 999999999999999999999999999863
No 31
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.4e-36 Score=306.56 Aligned_cols=281 Identities=21% Similarity=0.335 Sum_probs=235.1
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
..+.+|...|++++|+| ++.+|++++.|+.|++|+.. .+....+.+|...|.+++|+|++++|++++.||+|++||+
T Consensus 256 ~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~ 332 (577)
T 2ymu_A 256 QTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 332 (577)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCC--CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 45788999999999999 99999999999999999975 5778889999999999999999999999999999999998
Q ss_pred CCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 261 TKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 261 ~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
... .+..+..+ ..+.+++|+|+ +.+|++|+.|+.|++||. +++.+..+ .|...|.+++|+|++++|++++.|+.|
T Consensus 333 ~~~-~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v 409 (577)
T 2ymu_A 333 NGQ-HLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 409 (577)
T ss_dssp TSC-EEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred CCC-eeEEEeCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEE
Confidence 654 45566665 57889999995 578999999999999996 56666666 588899999999999999999999999
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCcee
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVH 418 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
++|+.... .. .....|...|.++.|+ |++++|++++.|+.|++||.... .......+...+.
T Consensus 410 ~~~~~~~~---~~-----~~~~~~~~~v~~~~~s-----~d~~~l~~~~~d~~v~~w~~~~~-----~~~~~~~~~~~v~ 471 (577)
T 2ymu_A 410 KLWNRNGQ---LL-----QTLTGHSSSVWGVAFS-----PDDQTIASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVR 471 (577)
T ss_dssp EEECTTCC---EE-----EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTSC-----EEEEEECCSSCEE
T ss_pred EEEeCCCC---EE-----EEecCCCCCeEEEEEC-----CCCCEEEEEcCCCEEEEEECCCC-----EEEEEcCCCCCEE
Confidence 99985421 11 1235788888888776 99999999999999999997532 1122222233332
Q ss_pred eeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 419 SIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
. +.|+| ++++|++++.|+.|++||.. ..++..+.+|...|++++|+|++++|++++.||.|+|||+.
T Consensus 472 ~--~~~sp-----d~~~las~~~d~~i~iw~~~---~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 472 G--VAFSP-----DGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp E--EEECT-----TSCEEEEEETTSEEEEEETT---SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred E--EEEcC-----CCCEEEEEeCCCEEEEEcCC---CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 2 35555 99999999999999999964 34688899999999999999999999999999999999975
No 32
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1e-36 Score=294.59 Aligned_cols=287 Identities=16% Similarity=0.116 Sum_probs=212.4
Q ss_pred cccEEEEEEecCCCCEEEEEeCCC-------cEEEEEcCCCCc---------eeEEeecCCCCeEEEEEccCCCEEEEE-
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDG-------TLTVCTVSDPPK---------VIKLLNGHSKDVTDFDFSSNNQYIASS- 249 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg-------~i~iwd~~~~~~---------~~~~~~~h~~~V~~l~~s~~~~~l~s~- 249 (498)
.-+|+|++|+| ++.+||+||.|. .|++|++..... ....+.+|...|.+++++ +..+++|
T Consensus 14 g~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 35899999999 999999998654 599999875321 123467899999998875 4466665
Q ss_pred ----------eCCCcEEEEECCCCcEE-E---EEecC------CCeEEEEEEcCCCcEE-EEEeCCCcEEEEEcCCCcEE
Q 010871 250 ----------SMDKTVRVWELTKGDCI-R---VIYGV------SSQLCIRFHPVNNNFL-SVGNANKEITVFNFSTGRII 308 (498)
Q Consensus 250 ----------s~dg~v~iwd~~~~~~~-~---~~~~~------~~v~~i~~~~~~~~~l-~~g~~dg~i~iwd~~~~~~~ 308 (498)
+.|+.+++|++.+.... . ..... ..+.+++|+|++..++ ++++.|++|+|||+.+++.+
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 45788999998765322 2 11111 2367899999765443 34557899999999999999
Q ss_pred EEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc
Q 010871 309 KKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ 388 (498)
Q Consensus 309 ~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~ 388 (498)
..+.+...|.+++|+|+|+++++++.++ +.+|+.......... ....|...|.++.|. |++.++++++.
T Consensus 171 ~~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~-----~~~~~~~~v~~v~fs-----pdg~~l~~~s~ 239 (365)
T 4h5i_A 171 FEIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARK-----TDFDKNWSLSKINFI-----ADDTVLIAASL 239 (365)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEE-----CCCCTTEEEEEEEEE-----ETTEEEEEEEE
T ss_pred EEeCCCCceEEEEEccCCceEEecccee-EEEEEeccCcceeee-----ecCCCCCCEEEEEEc-----CCCCEEEEEec
Confidence 9999999999999999999999998665 555554433222111 125677778888777 99999999999
Q ss_pred CC----cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceee-ecC
Q 010871 389 DG----NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNK-LQG 463 (498)
Q Consensus 389 dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~-~~~ 463 (498)
|+ .+++|++...............+...+. .++|+| +|++||+|+.|++|+|||+.++ .++.. +.+
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~Sp-----dg~~lasgs~D~~V~iwd~~~~--~~~~~~~~g 310 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGIT--SMDVDM-----KGELAVLASNDNSIALVKLKDL--SMSKIFKQA 310 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEE--EEEECT-----TSCEEEEEETTSCEEEEETTTT--EEEEEETTS
T ss_pred CCcceeEEeecccccceecceeeeeecCCCCCeE--eEEECC-----CCCceEEEcCCCEEEEEECCCC--cEEEEecCc
Confidence 88 5788887654322211122222222222 235555 9999999999999999999984 45666 479
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 464 HRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 464 h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
|...|++|+|+|||++|||||.|++|+||++..
T Consensus 311 H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 311 HSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999999999999999999864
No 33
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.5e-35 Score=292.44 Aligned_cols=279 Identities=15% Similarity=0.267 Sum_probs=223.9
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee--cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN--GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
.+++|+||+ + ++||+|. |++|+|||+.+ ++....+. +|...|++|+|+|+|++|++|+.||+|+|||+.+++++
T Consensus 107 y~~~l~wS~-~-n~lAvgl-d~tV~lWd~~t-g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 107 YLNLVDWSS-G-NVLAVAL-DNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp TCBCEEECT-T-SEEEEEE-TTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred cceeEEECC-C-CEEEEEe-CCEEEEEECCC-CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence 367899997 4 5888776 89999999998 66666554 68889999999999999999999999999999999999
Q ss_pred EEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc-EEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEc
Q 010871 267 RVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR-IIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISM 343 (498)
Q Consensus 267 ~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~ 343 (498)
..+.+|. .+.++.+. +.++++|+.|+.+++||..... .+..+ .|...+..+.+++++.++++++.||.|++|+.
T Consensus 183 ~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 183 RNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp EEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred EEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence 9999885 56677775 4799999999999999998754 44444 58899999999999999999999999999998
Q ss_pred cCCcccccccccccccCCCccceeeEEEeEeeEcCCC-cEEEEE--EcCCcEEEEEccccccceeeEeEeeccCCceeee
Q 010871 344 ESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG-PVLLTC--TQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSI 420 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~-~~l~t~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
.......... .....|...|.++.|. |.+ ..++++ +.|+.|++||+.++.. ..... ......
T Consensus 260 ~~~~~~~~~~---~~~~~~~~~V~~~~~~-----p~~~~~la~~~gs~D~~I~iwd~~t~~~-----~~~~~--~~~~v~ 324 (420)
T 4gga_A 260 APGEGGWVPL---QTFTQHQGAVKAVAWC-----PWQSNVLATGGGTSDRHIRIWNVCSGAC-----LSAVD--AHSQVC 324 (420)
T ss_dssp SCCSSCSCCS---EEECCCSSCEEEEEEC-----TTCTTEEEEEECTTTCEEEEEETTTTEE-----EEEEE--CSSCEE
T ss_pred ccccccceee---eeecccCCceeeeeeC-----CCcccEEEEEeecCCCEEEEEeCCcccc-----ceeec--ccccee
Confidence 7654332211 2236778889888887 544 555554 4799999999986522 11111 222233
Q ss_pred EEEEeeeeeccCCCEEEEEe--CCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 421 RASFCPLLSLEKGEYIVAGS--EDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~gs--~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
...|++ +++.+++++ .|+.|+|||+.++ .++..+.+|.+.|++|+|+|+|++|+||+.||+|+|||+.+
T Consensus 325 ~~~~~~-----~~~~lv~~sg~~d~~I~iwd~~~~--~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 325 SILWSP-----HYKELISGHGFAQNQLVIWKYPTM--AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EEEEET-----TTTEEEEEECTTTCCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred eeeecC-----CCCeEEEEEecCCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 345555 888887765 6899999999984 47899999999999999999999999999999999999864
No 34
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-35 Score=279.57 Aligned_cols=282 Identities=13% Similarity=0.172 Sum_probs=229.8
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
....+.+|.+.|++++| | ++.+|++|+.||.|++||+.+ ......+..|...|.+++|+|++++|++++.||.|++|
T Consensus 10 ~~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDD-QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESS-SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCC-CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 34578999999999999 7 889999999999999999987 77888899999999999999999999999999999999
Q ss_pred ECCCC---cEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcC-CCCEEEEE
Q 010871 259 ELTKG---DCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDH-TGQLLFCG 332 (498)
Q Consensus 259 d~~~~---~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~-~~~~l~~~ 332 (498)
++... +.+..+..| ..+.++.|. +.++++++.||.|++|| .++.+..+ .+...+.++++.+ ++..++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 98754 556677766 477888883 46899999999999999 56666666 5888999999988 89999999
Q ss_pred cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeec
Q 010871 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLK 412 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 412 (498)
+.+|.|++||..... ... ...|...+.++.+. +++. +++++.||.|++||++.... ......
T Consensus 162 ~~d~~i~i~d~~~~~----~~~----~~~~~~~i~~~~~~-----~~~~-~~~~~~dg~i~i~d~~~~~~----~~~~~~ 223 (313)
T 3odt_A 162 SADKTIKLWQNDKVI----KTF----SGIHNDVVRHLAVV-----DDGH-FISCSNDGLIKLVDMHTGDV----LRTYEG 223 (313)
T ss_dssp ETTSCEEEEETTEEE----EEE----CSSCSSCEEEEEEE-----ETTE-EEEEETTSEEEEEETTTCCE----EEEEEC
T ss_pred ECCCCEEEEecCceE----EEE----eccCcccEEEEEEc-----CCCe-EEEccCCCeEEEEECCchhh----hhhhhc
Confidence 999999999843211 111 13377888888887 7777 99999999999999986421 111111
Q ss_pred cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEe
Q 010871 413 LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVW 492 (498)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW 492 (498)
+...+. .+.|+| ++ .|++++.||.|++||+.+++ ++..+..|...|.+++|+|+++ +++++.||.|++|
T Consensus 224 ~~~~i~--~~~~~~-----~~-~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw 292 (313)
T 3odt_A 224 HESFVY--CIKLLP-----NG-DIVSCGEDRTVRIWSKENGS--LKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIF 292 (313)
T ss_dssp CSSCEE--EEEECT-----TS-CEEEEETTSEEEEECTTTCC--EEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEE
T ss_pred CCceEE--EEEEec-----CC-CEEEEecCCEEEEEECCCCc--eeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEE
Confidence 222222 235554 77 68999999999999999854 6788899999999999999998 5678999999999
Q ss_pred ecCCC
Q 010871 493 KRAKT 497 (498)
Q Consensus 493 ~~~~~ 497 (498)
+++++
T Consensus 293 ~~~~~ 297 (313)
T 3odt_A 293 SQEKS 297 (313)
T ss_dssp ESCGG
T ss_pred eCCCC
Confidence 99864
No 35
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-37 Score=302.26 Aligned_cols=290 Identities=11% Similarity=0.201 Sum_probs=235.4
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCC---CCceeEEeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEC
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD---PPKVIKLLNGHSKDVTDFDFSSN-NQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~---~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~ 260 (498)
.|...|++++|+| ++.+|++|+.||.|+||++.. .......+.+|...|.+++|+|+ +.+|++++.||.|++||+
T Consensus 65 ~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 65 QVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred ecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 5788999999999 999999999999999999986 23578888999999999999998 899999999999999999
Q ss_pred CCCc------EEEEE---ecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec-------CCCeEEEEEc
Q 010871 261 TKGD------CIRVI---YGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV-------DSEVTSMDHD 323 (498)
Q Consensus 261 ~~~~------~~~~~---~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-------~~~i~~l~~~ 323 (498)
.+++ ....+ ..| ..+.+++|+|+++.+|++++.||.|++||+++++.+..+.. ...|.+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence 9886 33332 333 57889999998789999999999999999999999888853 6789999999
Q ss_pred CCC-CEEEEEcCCC---eEEEEEccCCcccccccccccccC-CCccceeeEEEeEeeEcC-CCcEEEEEEcCCcEEEEEc
Q 010871 324 HTG-QLLFCGDAQG---CIYSISMESHSGALSRSHRHRTTG-KRKCPVTTVQYRSFSLLA-GGPVLLTCTQDGNLSFFSV 397 (498)
Q Consensus 324 ~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~s~-~~~~l~t~s~dg~i~iwd~ 397 (498)
|++ .+|++++.++ .|++||++...... .... .|...|.++.|+ | ++.+|++++.||.|++||+
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~------~~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPL------QTLNQGHQKGILSLDWC-----HQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCS------BCCCSCCSSCEEEEEEC-----SSCSSCEEEEESSSEEEEECS
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCc------EEeecCccCceeEEEeC-----CCCCCeEEEEeCCCCEEEeeC
Confidence 997 6899999998 99999997643221 1124 688889988887 7 8999999999999999999
Q ss_pred cccccceeeEeEeeccCCceeeeEEEEeeeeeccCC-CEEEEEeCCCcEEEEECCCCCcccee-----------------
Q 010871 398 ALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKG-EYIVAGSEDSNVYFYDLAKPKHSCVN----------------- 459 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~dg~I~iwd~~~~~~~~~~----------------- 459 (498)
..... ......+...+.. +.|+| ++ .+|++++.||.|++||+.+.......
T Consensus 293 ~~~~~----~~~~~~~~~~v~~--~~~s~-----~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (416)
T 2pm9_A 293 ESAEQ----LSQFPARGNWCFK--TKFAP-----EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNN 361 (416)
T ss_dssp SSCCE----EEEEECSSSCCCC--EEECT-----TCTTEEEECCSSSEEEEEESCCCCCSSCC-----------------
T ss_pred CCCcc----ceeecCCCCceEE--EEECC-----CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccc
Confidence 86421 1111122222332 35665 88 89999999999999999875421110
Q ss_pred ----------------eecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 460 ----------------KLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 460 ----------------~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
....|..++.+++|+|+|++|++++.||.|+||++.+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 362 VSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -----CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 01116778889999999999999999999999999875
No 36
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8e-36 Score=280.13 Aligned_cols=253 Identities=19% Similarity=0.208 Sum_probs=195.4
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC-CceeEEeecCCCCeEEEEEcc--CCCEEEEEeCCCcEEE
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP-PKVIKLLNGHSKDVTDFDFSS--NNQYIASSSMDKTVRV 257 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~--~~~~l~s~s~dg~v~i 257 (498)
.++.+|.+.|++++|+| ++++||+|+.|++|+|||+... .+.+..+.+|.+.|.+++|++ ++++|++|+.||+|++
T Consensus 3 ~~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 46789999999999999 9999999999999999999752 467889999999999999986 3889999999999999
Q ss_pred EECCCCc--EEEEEecC-CCeEEEEEEcCC-CcEEEEEeCCCcEEEEEcCCCc---EEEEeecCCCeEEEEEcCC-----
Q 010871 258 WELTKGD--CIRVIYGV-SSQLCIRFHPVN-NNFLSVGNANKEITVFNFSTGR---IIKKLVVDSEVTSMDHDHT----- 325 (498)
Q Consensus 258 wd~~~~~--~~~~~~~~-~~v~~i~~~~~~-~~~l~~g~~dg~i~iwd~~~~~---~~~~~~~~~~i~~l~~~~~----- 325 (498)
||+.+++ .+..+..| ..+.+++|+|+. +.+|++|+.|+.|++||++++. ......|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 55666666 478899999963 5799999999999999998763 2222358889999999997
Q ss_pred --------CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC---cEEEEEEcCCcEEE
Q 010871 326 --------GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG---PVLLTCTQDGNLSF 394 (498)
Q Consensus 326 --------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~---~~l~t~s~dg~i~i 394 (498)
+++|++|+.|+.|++||++........ ...+.+|...|.++.|+ |++ .+|++++.|++|++
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~---~~~l~~H~~~V~~v~~s-----p~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL---ESTLEGHSDWVRDVAWS-----PTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEE---EEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEE
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE---EEEecCCCCceEEEEEC-----CCCCCceEEEEEECCCcEEE
Confidence 579999999999999998754321111 11234566666666665 542 45555555555555
Q ss_pred EEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccc-eeee--cCCCCCeEEE
Q 010871 395 FSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSC-VNKL--QGHRFPVVAV 471 (498)
Q Consensus 395 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~-~~~~--~~h~~~V~~l 471 (498)
||+ .+..... ...+ .+|...|.++
T Consensus 234 Wd~-----------------------------------------------------~~~~~~~~~~~~~~~~~~~~v~~~ 260 (297)
T 2pm7_B 234 WTQ-----------------------------------------------------DNEQGPWKKTLLKEEKFPDVLWRA 260 (297)
T ss_dssp EEE-----------------------------------------------------SSTTSCCEEEESSSSCCSSCEEEE
T ss_pred EEe-----------------------------------------------------CCCCCccceeeeecccCCCcEEEE
Confidence 554 3321100 1111 4577889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEeecC
Q 010871 472 AWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 472 ~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+|+|++++||+++.||.|+||+..
T Consensus 261 ~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 261 SWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EECSSSCCEEEEETTSCEEEEEEC
T ss_pred EECCCCCEEEEEcCCCcEEEEEEC
Confidence 999999999999999999999976
No 37
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-37 Score=301.83 Aligned_cols=297 Identities=16% Similarity=0.161 Sum_probs=217.1
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC-ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP-KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
.+..|.++|++++|+| ++++||+|+.||.|+|||+.+.. .....+.+|...|.+++|+|++++|++++.||+|++||+
T Consensus 6 ~~~~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eEecCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 4455778999999999 99999999999999999998732 677888999999999999999999999999999999999
Q ss_pred CCCc---EEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE---EEEe-e-cCCCeEEEEEcCCCCEEEE
Q 010871 261 TKGD---CIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI---IKKL-V-VDSEVTSMDHDHTGQLLFC 331 (498)
Q Consensus 261 ~~~~---~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~-~-~~~~i~~l~~~~~~~~l~~ 331 (498)
.+++ ....+..| ..+.+++|+|+ +.+|++|+.|+.|++||+++++. ...+ . |...|.+++|+|++++|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPN-EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTT-SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred CCCCceeeeeEecccCCceEEEEECCC-CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 9877 55555555 57889999994 57888999999999999998873 5555 3 8899999999999999999
Q ss_pred EcCCCeEEEEEccCCccccc-----------ccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 332 GDAQGCIYSISMESHSGALS-----------RSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
++.||.|++||+........ .......+ .|...|.++.|+ |++++|++++.||.|++||+...
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s-----p~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS-----PSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC-----TTSSCEEEEETTTEEC-CEECST
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC-----CCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999863321110 00111112 778888888877 99999999999999999999876
Q ss_pred ccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccce----------------------
Q 010871 401 IQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCV---------------------- 458 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~---------------------- 458 (498)
............+...+. .+.|+| ++++|++|+.++.+ +|+.........
T Consensus 238 ~~~~~~~~~~~~~~~~v~--~~~~s~-----~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (377)
T 3dwl_C 238 EQPPRALITVKLSQLPLR--SLLWAN-----ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGR 309 (377)
T ss_dssp TSCEEECCCEECSSSCEE--EEEEEE-----TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCC
T ss_pred CCcceeeEeecCCCCceE--EEEEcC-----CCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccc
Confidence 432111111112222222 336666 99999998876655 676652210000
Q ss_pred ------------e----------------eecCCCCCeEEEEEcCCC-C---EEEEEeCCCeEEEeec
Q 010871 459 ------------N----------------KLQGHRFPVVAVAWNHGE-N---LLASSDLYGIVIVWKR 494 (498)
Q Consensus 459 ------------~----------------~~~~h~~~V~~l~~sp~~-~---~l~s~~~Dg~i~iW~~ 494 (498)
. ....|...|+++++.+.. . .|+|||.||.|+|||+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 310 EEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 112399999999976543 3 6999999999999986
No 38
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.5e-35 Score=279.16 Aligned_cols=279 Identities=14% Similarity=0.253 Sum_probs=218.7
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee--cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN--GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIR 267 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 267 (498)
.++|+||+ ++ +||+|. |++|+|||+.+ ++.++.+. +|...|.+++|+|++++|++|+.||+|++||+++++++.
T Consensus 28 ~~~l~WS~-~~-~lAvg~-D~tV~iWd~~t-g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 28 LNLVDWSS-GN-VLAVAL-DNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp CBCEEECT-TS-EEEEEE-TTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ceEEEECC-CC-EEEEEe-CCEEEEEECCC-CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE
Confidence 46799998 54 777765 99999999998 67666654 688899999999999999999999999999999999999
Q ss_pred EEecCCC-eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE-EEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEcc
Q 010871 268 VIYGVSS-QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI-IKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISME 344 (498)
Q Consensus 268 ~~~~~~~-v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~ 344 (498)
.+.+|.. +.++.+. +.++++|+.++.+++|+...... +..+ .|...+..+.+.+++++|++++.||.|++||+.
T Consensus 104 ~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 104 NMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp EEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred EecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence 9998864 4455443 46899999999999999987643 3344 588899999999999999999999999999997
Q ss_pred CCcccccccccccccCCCccceeeEEEeEeeEcCCCc-E--EEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeE
Q 010871 345 SHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGP-V--LLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR 421 (498)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~-~--l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (498)
.......... ....+...|..+.+. +.+. . +++++.++.|++||...... ......... ...
T Consensus 181 ~~~~~~~~~~---~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----~~~~~~~~~--v~~ 245 (318)
T 4ggc_A 181 PGEGGWVPLQ---TFTQHQGAVKAVAWC-----PWQSNVLATGGGTSDRHIRIWNVCSGAC-----LSAVDAHSQ--VCS 245 (318)
T ss_dssp CBTTBSCCSE---EECCCCSCEEEEEEC-----TTSTTEEEEEECTTTCEEEEEETTTCCE-----EEEEECSSC--EEE
T ss_pred CCccccccee---eecccCCceEEEEec-----CCCCcEEEEEecCCCCEEEEEecccccc-----cccccceee--eee
Confidence 6543322211 125566778877766 5444 3 34566789999999875422 111112222 223
Q ss_pred EEEeeeeeccCCCEEEEEe--CCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 422 ASFCPLLSLEKGEYIVAGS--EDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 422 ~~~~~~~~~~~~~~l~~gs--~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
..|.+ ++..+++++ .|+.|++||+.++ .++..+.+|.+.|++|+|+|++++|+||+.||+|+|||+.+.
T Consensus 246 ~~~~~-----~~~~~~~~sg~~d~~i~iwd~~~~--~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 246 ILWSP-----HYKELISGHGFAQNQLVIWKYPTM--AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEET-----TTTEEEEEECTTTCCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eeecc-----cccceEEEEEcCCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 35555 777776654 7899999999984 478999999999999999999999999999999999998653
No 39
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=301.06 Aligned_cols=299 Identities=13% Similarity=0.153 Sum_probs=223.3
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCC---CC--ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSD---PP--KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRV 257 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~---~~--~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~i 257 (498)
..+|.+.|++++|+|.++.+||+|+.||+|+|||+.+ .. .....+ +|...|.+++|+|++++|++++.||+|++
T Consensus 59 ~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~v 137 (437)
T 3gre_A 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIV 137 (437)
T ss_dssp CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 3889999999999986788999999999999999865 22 122333 59999999999999999999999999999
Q ss_pred EECC---CCcEEEEEec-------------CCCeEEEEE--EcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee---cCCC
Q 010871 258 WELT---KGDCIRVIYG-------------VSSQLCIRF--HPVNNNFLSVGNANKEITVFNFSTGRIIKKLV---VDSE 316 (498)
Q Consensus 258 wd~~---~~~~~~~~~~-------------~~~v~~i~~--~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~ 316 (498)
||++ +++.+..+.. ...+.++.+ ++ ++.+|++|+.||.|++||+++++.+..+. |...
T Consensus 138 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~ 216 (437)
T 3gre_A 138 LKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA 216 (437)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC
T ss_pred EEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc
Confidence 9995 5655554432 234555553 34 46899999999999999999999998885 6789
Q ss_pred eEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEE
Q 010871 317 VTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFS 396 (498)
Q Consensus 317 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd 396 (498)
|.+++|+|++++|++|+.||.|++||++....... . ...|..+|.++.+.+ .+++++.+|++++.||.|++||
T Consensus 217 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~----~~~~~~~v~~~~~~~-~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 217 VSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRS--W----SFGDHAPITHVEVCQ-FYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE--E----BCTTCEEEEEEEECT-TTCTTEEEEEEESTTEEEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEE--E----ecCCCCceEEEEecc-ccCCCccEEEEEcCCCcEEEEE
Confidence 99999999999999999999999999975332211 1 125667888886652 2336788999999999999999
Q ss_pred ccccccceeeEeEe-----eccCCc--------eee--eEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeee
Q 010871 397 VALEIQGYLTFRCS-----LKLAPR--------VHS--IRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL 461 (498)
Q Consensus 397 ~~~~~~~~~~~~~~-----~~~~~~--------~~~--~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~ 461 (498)
+..+.......... ..+... ... ....+..+.++ ++++|++|+.||.|++||+.+++ +...+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~--~~~~~ 366 (437)
T 3gre_A 290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS--SSKAV 366 (437)
T ss_dssp TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG--GCEEE
T ss_pred cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc--cceEE
Confidence 98653211110000 000000 000 00012223333 67899999999999999999854 34444
Q ss_pred cC-------------------------------------CCCCeEEEEEcCC--CCEEEEEeCCCeEEEee
Q 010871 462 QG-------------------------------------HRFPVVAVAWNHG--ENLLASSDLYGIVIVWK 493 (498)
Q Consensus 462 ~~-------------------------------------h~~~V~~l~~sp~--~~~l~s~~~Dg~i~iW~ 493 (498)
.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 43 8999999999988 77999999999999995
No 40
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=281.36 Aligned_cols=245 Identities=16% Similarity=0.190 Sum_probs=198.8
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCce---eEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV---IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~---~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
...|..+|++++|+| + ..|++|+.||+|+|||+.++... ...+.+|.+.|.+++|+|++++|++|+.||+|++||
T Consensus 78 ~~~~~~~v~~~~~s~-d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 78 GVQTEAGVADLTWVG-E-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp EEEESSCEEEEEEET-T-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeccCCCEEEEEEeC-C-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 345678999999999 5 57889999999999999873322 233558999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee---cCCCeEEEEEcCC-CCEEEEEcC
Q 010871 260 LTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV---VDSEVTSMDHDHT-GQLLFCGDA 334 (498)
Q Consensus 260 ~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~i~~l~~~~~-~~~l~~~~~ 334 (498)
+.+++++..+.+|. .|.+++|++++..+|++|+.|++|++||+++++.+..+. +...+.+++|+|+ +++|++|+.
T Consensus 156 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~ 235 (344)
T 4gqb_B 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE 235 (344)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred CCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc
Confidence 99999999999885 788999999888899999999999999999999888773 4567999999985 568899999
Q ss_pred CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC-cEEEEEEcCCcEEEEEccccccceeeEeEeecc
Q 010871 335 QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG-PVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKL 413 (498)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~-~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 413 (498)
||.|++||++...... .+.+|...|+++.|+ |++ ++|++|+.|++|++||+..+.. .....+
T Consensus 236 dg~v~~wd~~~~~~~~-------~~~~h~~~v~~v~fs-----p~g~~~lasgs~D~~i~vwd~~~~~~-----~~~~~H 298 (344)
T 4gqb_B 236 NGTVSLVDTKSTSCVL-------SSAVHSQCVTGLVFS-----PHSVPFLASLSEDCSLAVLDSSLSEL-----FRSQAH 298 (344)
T ss_dssp TSEEEEEESCC--CCE-------EEECCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTCCEE-----EEECCC
T ss_pred CCcEEEEECCCCcEEE-------EEcCCCCCEEEEEEc-----cCCCeEEEEEeCCCeEEEEECCCCcE-----EEEcCC
Confidence 9999999997543321 236788999998887 887 5799999999999999976421 112223
Q ss_pred CCceeeeEEEEeeeeeccCCC-EEEEEeCCCcEEEEECCCC
Q 010871 414 APRVHSIRASFCPLLSLEKGE-YIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~-~l~~gs~dg~I~iwd~~~~ 453 (498)
...+. .++|+| ++. +|++|+.|++|++|++.+.
T Consensus 299 ~~~V~--~v~~sp-----~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 299 RDFVR--DATWSP-----LNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SSCEE--EEEECS-----SSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCEE--EEEEeC-----CCCeEEEEEcCCCeEEEEECCCC
Confidence 33333 336666 765 6789999999999999874
No 41
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.1e-36 Score=287.03 Aligned_cols=293 Identities=14% Similarity=0.180 Sum_probs=218.8
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC---ceeEEeecCCCCeEEEEEcc--CCCEEEEEeCCCc
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP---KVIKLLNGHSKDVTDFDFSS--NNQYIASSSMDKT 254 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~s~--~~~~l~s~s~dg~ 254 (498)
+..+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+.. .....+.+|...|.+++|+| ++++|++++.||.
T Consensus 4 ~~~~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CCEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cccCcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 457889999999999999 99999999999999999998632 46677889999999999999 6899999999999
Q ss_pred EEEEECCCC---------cEEEEEecC-CCeEEEEEEcCC-CcEEEEEeCCCcEEEEEcCCCcEEEEe------------
Q 010871 255 VRVWELTKG---------DCIRVIYGV-SSQLCIRFHPVN-NNFLSVGNANKEITVFNFSTGRIIKKL------------ 311 (498)
Q Consensus 255 v~iwd~~~~---------~~~~~~~~~-~~v~~i~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~------------ 311 (498)
|++||+.++ +.+..+..| ..+.+++|+|+. +.++++++.||.|++||+++++.+..+
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 999999987 557777766 578899999952 678999999999999999887644332
Q ss_pred --ecCCCeEEEEEcCC---CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC----cE
Q 010871 312 --VVDSEVTSMDHDHT---GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG----PV 382 (498)
Q Consensus 312 --~~~~~i~~l~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~----~~ 382 (498)
.+...+.+++|+|+ +..+++++.++.+.+|+......... .....|...|.++.|. |++ ++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~i~~~~~~-----p~~~~~~~~ 232 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA-----AKLPGHKSLIRSISWA-----PSIGRWYQL 232 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE-----EECCCCCSCEEEEEEC-----CCSSCSSEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee-----eecCCCCcceeEEEEC-----CCCCCcceE
Confidence 25678999999997 89999999999997777654332211 2236788899998887 887 89
Q ss_pred EEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeE-EEEeeeeeccCCCEEEEE----eCCCcEEEEECCCCCccc
Q 010871 383 LLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR-ASFCPLLSLEKGEYIVAG----SEDSNVYFYDLAKPKHSC 457 (498)
Q Consensus 383 l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~g----s~dg~I~iwd~~~~~~~~ 457 (498)
|++++.||.|++||++......... ....... ....+ ....++.+ .....+.+|+... ...
T Consensus 233 l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 298 (351)
T 3f3f_A 233 IATGCKDGRIRIFKITEKLSPLASE-------ESLTNSNMFDNSA-----DVDMDAQGRSDSNTEEKAELQSNLQ--VEL 298 (351)
T ss_dssp EEEEETTSCEEEEEEEECC---------------------------------------------------CCSEE--EEE
T ss_pred EEEEcCCCeEEEEeCCCCcCccccC-------CcccceeccCCCc-----ccccccccccccccceeeeeccccc--ccE
Confidence 9999999999999998542211110 0000000 01111 22333333 3334455565554 456
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 458 VNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 458 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
+..+.+|...|++++|+|++++|++|+.||.|+||+++++
T Consensus 299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 7888999999999999999999999999999999999865
No 42
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.7e-35 Score=291.83 Aligned_cols=286 Identities=13% Similarity=0.211 Sum_probs=229.5
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIR 267 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 267 (498)
..+....|+| ++++||+|+.||.|+|||+.+ ......+.+|...|.+++|+|++++|++++.||+|++||+.+++.+.
T Consensus 98 ~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 175 (420)
T 3vl1_A 98 DYTAVDTAKL-QMRRFILGTTEGDIKVLDSNF-NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR 175 (420)
T ss_dssp CEEEEEEECS-SSCEEEEEETTSCEEEECTTS-CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE
T ss_pred CceEEEEEec-CCCEEEEEECCCCEEEEeCCC-cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce
Confidence 3455556787 999999999999999999987 77778888999999999999999999999999999999999999999
Q ss_pred EEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee----cCCCeEEE---------------------E
Q 010871 268 VIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV----VDSEVTSM---------------------D 321 (498)
Q Consensus 268 ~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----~~~~i~~l---------------------~ 321 (498)
.+.+|. .+.+++|+|+ +.+|++++.||.|++||+++++.+..+. +...+.++ +
T Consensus 176 ~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 176 TLIGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp EEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred EEcCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 998774 7889999995 5788899999999999999999988874 33444444 4
Q ss_pred EcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCc-EEEEEEcCCcEEEEEcccc
Q 010871 322 HDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGP-VLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 322 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~-~l~t~s~dg~i~iwd~~~~ 400 (498)
|+|++++|++|+.||.|++||++........ ...|...|.++.|. |++. +|++++.||.|++||++..
T Consensus 255 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~~v~~~~~~-----~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSGVITVHNVFSKEQTIQL------PSKFTCSCNSLTVD-----GNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp SSCTTEEEEEEETTSCEEEEETTTCCEEEEE------CCTTSSCEEEEEEC-----SSCTTEEEEEETTSEEEEEETTCT
T ss_pred EcCCCCEEEEEcCCCeEEEEECCCCceeEEc------ccccCCCceeEEEe-----CCCCCEEEEEeCCCeEEEEEcCCC
Confidence 5788999999999999999999765432221 24577889888887 8888 9999999999999999865
Q ss_pred ccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCc-------cceeeecCCCCCeEEEEE
Q 010871 401 IQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKH-------SCVNKLQGHRFPVVAVAW 473 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~-------~~~~~~~~h~~~V~~l~~ 473 (498)
....... ....... +...+.+ ++.+|++++.||.|++|++..+.. .....+.+|.+.|.+++|
T Consensus 324 ~~~~~~~--~~~~~~~---v~~~~~~-----~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 393 (420)
T 3vl1_A 324 ECPVGEF--LINEGTP---INNVYFA-----AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCY 393 (420)
T ss_dssp TSCSEEE--EESTTSC---EEEEEEE-----TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEE
T ss_pred cCchhhh--hccCCCC---ceEEEeC-----CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEE
Confidence 3321111 1112222 2223444 789999999999999999987421 122345678899999999
Q ss_pred cCCCC---EEEEEeCCCeEEEeecCCC
Q 010871 474 NHGEN---LLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 474 sp~~~---~l~s~~~Dg~i~iW~~~~~ 497 (498)
+|++. .|++++.+|.+.+|+++.+
T Consensus 394 s~~~~~~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 394 VSDDESNGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp ECCSSSSCEEEEEETTTEEEEEESCC-
T ss_pred ccCCCCcceEEEEcCCceEEEEeccCC
Confidence 99999 7777888999999999753
No 43
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-35 Score=290.74 Aligned_cols=282 Identities=16% Similarity=0.219 Sum_probs=226.3
Q ss_pred ccccc--EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeec-CCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 010871 185 QCKAA--VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNG-HSKDVTDFDFSSNNQYIASSSMDKTVRVWELT 261 (498)
Q Consensus 185 ~h~~~--V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~ 261 (498)
+|... +.+++|++ ..+++++.||.|+|||+.+ +.....+.. |...|.+++|+|++++|++|+.||.|++||+.
T Consensus 89 ~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADS-GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTT-CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCC-CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 55555 44556653 5678888999999999998 666666554 89999999999999999999999999999999
Q ss_pred CCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcC-CCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 262 KGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFS-TGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 262 ~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
+++.+..+..|. .+.++.|.+ .++++|+.||.|++||++ .+..+..+ .|...|.+++|+|++.+|++|+.||.|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v 241 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence 999999998775 778999943 699999999999999998 45555555 588999999999999999999999999
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC-cEEEEEE--cCCcEEEEEccccccceeeEeEeeccCC
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG-PVLLTCT--QDGNLSFFSVALEIQGYLTFRCSLKLAP 415 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~-~~l~t~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 415 (498)
++||+....... ....|...|.++.|+ |++ .++++++ .|+.|++||+..+.. ........
T Consensus 242 ~iwd~~~~~~~~-------~~~~~~~~v~~~~~~-----p~~~~ll~~~~gs~d~~i~i~d~~~~~~-----~~~~~~~~ 304 (401)
T 4aez_A 242 QIWDARSSIPKF-------TKTNHNAAVKAVAWC-----PWQSNLLATGGGTMDKQIHFWNAATGAR-----VNTVDAGS 304 (401)
T ss_dssp EEEETTCSSEEE-------EECCCSSCCCEEEEC-----TTSTTEEEEECCTTTCEEEEEETTTCCE-----EEEEECSS
T ss_pred EEccCCCCCccE-------EecCCcceEEEEEEC-----CCCCCEEEEecCCCCCEEEEEECCCCCE-----EEEEeCCC
Confidence 999997533221 135678889988887 766 5566654 799999999986522 11112222
Q ss_pred ceeeeEEEEeeeeeccCCCEEEE--EeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 416 RVHSIRASFCPLLSLEKGEYIVA--GSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~--gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
.+ ..+.|+| ++.+|++ |+.||.|++||+.++.......+.+|...|.+++|+|++.+|++++.||.|++|+
T Consensus 305 ~v--~~~~~s~-----~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 305 QV--TSLIWSP-----HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp CE--EEEEECS-----SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred cE--EEEEECC-----CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 22 2335555 9999999 4489999999999866555666889999999999999999999999999999999
Q ss_pred cCCC
Q 010871 494 RAKT 497 (498)
Q Consensus 494 ~~~~ 497 (498)
+.++
T Consensus 378 ~~~~ 381 (401)
T 4aez_A 378 VYDG 381 (401)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 9764
No 44
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=285.29 Aligned_cols=299 Identities=14% Similarity=0.169 Sum_probs=229.7
Q ss_pred eeeecccccEEEEEEecCC--CCEEEEEeCCCcEEEEEcCCC-CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 010871 181 CIFDQCKAAVTILKFGHMS--SDLLAYGASDGTLTVCTVSDP-PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRV 257 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~--~~~lasg~~dg~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~i 257 (498)
..+.+|.+.|++++|+|+. +.+|++|+.||.|+|||+.+. ......+.+|...|.+++|+|++++|++++.||.|++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 4678999999999999933 699999999999999999873 3444788999999999999999999999999999999
Q ss_pred EECCCCcEEEEEecCCCeEEEEE--EcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCC
Q 010871 258 WELTKGDCIRVIYGVSSQLCIRF--HPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQ 335 (498)
Q Consensus 258 wd~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 335 (498)
||+.+++.+....+...+.++.| ++ ++.+|++++.||.|++||+++++.+..+.....+.++.+.+ ..+++++.+
T Consensus 113 wd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 189 (368)
T 3mmy_A 113 WDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PMAVVATAE 189 (368)
T ss_dssp EETTTTEEEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TEEEEEEGG
T ss_pred EEcCCCCceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--CeeEEEeCC
Confidence 99999998887776678999999 66 45789999999999999999999998888777888887764 578899999
Q ss_pred CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC----cEEEEEEcCCcEEEEEccccccceeeEeEee
Q 010871 336 GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG----PVLLTCTQDGNLSFFSVALEIQGYLTFRCSL 411 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~----~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~ 411 (498)
+.+.+|+++.......... ..+...+.++.+. ++. ..+++++.||.|++||+..............
T Consensus 190 ~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 190 RGLIVYQLENQPSEFRRIE-----SPLKHQHRCVAIF-----KDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp GCEEEEECSSSCEEEEECC-----CSCSSCEEEEEEE-----ECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred CcEEEEEeccccchhhhcc-----ccccCCCceEEEc-----ccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 9999999976543332211 2223334444433 233 3399999999999999986422111111110
Q ss_pred ccCC----ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 010871 412 KLAP----RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYG 487 (498)
Q Consensus 412 ~~~~----~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg 487 (498)
.... ...........+.+++++++|++|+.||.|++||+.++ .++..+.+|...|++++|+|++++|++++.|+
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR--TKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT--EEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC--cEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 0000 00000001233344459999999999999999999984 46888999999999999999999999999988
Q ss_pred eEEEeec
Q 010871 488 IVIVWKR 494 (498)
Q Consensus 488 ~i~iW~~ 494 (498)
..+.|++
T Consensus 338 ~~~~~~~ 344 (368)
T 3mmy_A 338 WSKGHEF 344 (368)
T ss_dssp STTCGGG
T ss_pred ccccccc
Confidence 6665553
No 45
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-35 Score=290.67 Aligned_cols=254 Identities=22% Similarity=0.314 Sum_probs=211.1
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEE
Q 010871 223 VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFN 301 (498)
Q Consensus 223 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd 301 (498)
....+.+|.++|++++|+|++.+|++|+.||+|++||+.+++....+.+|. .|.+++|+|+ +.+|++|+.|++|++||
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWD 178 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEE
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEe
Confidence 355688999999999999999999999999999999999999999999885 7889999995 57999999999999999
Q ss_pred cCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC
Q 010871 302 FSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG 380 (498)
Q Consensus 302 ~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~ 380 (498)
+.+++++..+ .|...|.+++|+|++++|++|+.|+.|++||+...... ..+.+|...|.++.+. +++
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~-------~~~~~h~~~v~~~~~~-----~~g 246 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-------KTFTGHREWVRMVRPN-----QDG 246 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-------EEEECCSSCEEEEEEC-----TTS
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-------EEEeCCCccEEEEEEC-----CCC
Confidence 9999998888 58889999999999999999999999999999754322 1235778888888776 999
Q ss_pred cEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeee---------------eccCCCEEEEEeCCCcE
Q 010871 381 PVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLL---------------SLEKGEYIVAGSEDSNV 445 (498)
Q Consensus 381 ~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~gs~dg~I 445 (498)
.+|++++.|+.|++||+...... .....+...+.. +.|+|-. ....|.+|++|+.|+.|
T Consensus 247 ~~l~s~s~D~~v~vwd~~~~~~~----~~~~~h~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i 320 (410)
T 1vyh_C 247 TLIASCSNDQTVRVWVVATKECK----AELREHRHVVEC--ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320 (410)
T ss_dssp SEEEEEETTSCEEEEETTTCCEE----EEECCCSSCEEE--EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred CEEEEEcCCCeEEEEECCCCcee----eEecCCCceEEE--EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence 99999999999999999754211 111112222222 2454410 00127899999999999
Q ss_pred EEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 446 YFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 446 ~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
++||+.++ .++..+.+|...|++++|+|++++|++|+.||.|++||+.++
T Consensus 321 ~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 321 KMWDVSTG--MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp EEEETTTT--EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred EEEECCCC--ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999984 478889999999999999999999999999999999998754
No 46
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.3e-35 Score=276.94 Aligned_cols=269 Identities=17% Similarity=0.272 Sum_probs=222.7
Q ss_pred eeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCC
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSK 232 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~ 232 (498)
..+....++.+++|....... .....+.+|...|.+++|++ ++.++++|+.|++|+|||+.+ ++.+..+..|..
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~----~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~-~~~~~~~~~~~~ 123 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERL----DLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLEN-GKQIKSIDAGPV 123 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEE----EEEEEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTT
T ss_pred EEEEEcCCCCEEEEECCCCCe----eeeeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCC-CCEEEEEeCCCc
Confidence 455566677777775533211 12345789999999999999 899999999999999999998 788888999999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe
Q 010871 233 DVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL 311 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 311 (498)
.+.+++|+|++++|++++.||.|++|++++++....+..+. .+.+++|+|+ +.+|++|+.||.|++||+++++.+..+
T Consensus 124 ~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~lasg~~dg~i~iwd~~~~~~~~~~ 202 (321)
T 3ow8_A 124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATGKLLHTL 202 (321)
T ss_dssp CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 99999999999999999999999999999999988888775 6889999995 579999999999999999999999888
Q ss_pred e-cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC
Q 010871 312 V-VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG 390 (498)
Q Consensus 312 ~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg 390 (498)
. |...|.+++|+|++++|++|+.||.|++||++..... ....+|...|.++.|. |++.+|++++.|+
T Consensus 203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~-------~~~~~h~~~v~~~~~s-----p~~~~l~s~s~D~ 270 (321)
T 3ow8_A 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA-------GTLSGHASWVLNVAFC-----PDDTHFVSSSSDK 270 (321)
T ss_dssp CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE-------EEECCCSSCEEEEEEC-----TTSSEEEEEETTS
T ss_pred cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee-------EEEcCCCCceEEEEEC-----CCCCEEEEEeCCC
Confidence 4 7889999999999999999999999999998754321 1236788889988887 9999999999999
Q ss_pred cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 391 NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 391 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
.|++||+.+... ......+...+. .+.|+| ++.+|++++.||.|++||..
T Consensus 271 ~v~iwd~~~~~~----~~~~~~h~~~v~--~v~~s~-----~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 271 SVKVWDVGTRTC----VHTFFDHQDQVW--GVKYNG-----NGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CEEEEETTTTEE----EEEECCCSSCEE--EEEECT-----TSSEEEEEETTCCEEEEECC
T ss_pred cEEEEeCCCCEE----EEEEcCCCCcEE--EEEECC-----CCCEEEEEeCCCeEEEEeCC
Confidence 999999985421 111112222222 235555 99999999999999999963
No 47
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.9e-35 Score=280.91 Aligned_cols=282 Identities=14% Similarity=0.113 Sum_probs=227.4
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC--ceeEEeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP--KVIKLLNGHSKDVTDFDFSSNNQ-YIASSSMDKTVRVW 258 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iw 258 (498)
+..+|.+.|++++|+| ++.+|++|+.||.|+||++.+.. .....+.+|...|.+++|+|+++ +|++++.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 4568999999999999 99999999999999999998733 13455668999999999999999 99999999999999
Q ss_pred EC-CCCcEEEEEec--C-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC---------CcEEEEeecCCCeEEEEEcCC
Q 010871 259 EL-TKGDCIRVIYG--V-SSQLCIRFHPVNNNFLSVGNANKEITVFNFST---------GRIIKKLVVDSEVTSMDHDHT 325 (498)
Q Consensus 259 d~-~~~~~~~~~~~--~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~---------~~~~~~~~~~~~i~~l~~~~~ 325 (498)
|+ .+++. ..+.. | ..+.+++|+| +.++++++.|+.|++||+++ ++.+..+.+...|.+++|+++
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence 99 87765 55555 5 5788999999 57899999999999999988 777777778899999999988
Q ss_pred CCEEEEEcCCCeEEEEEccC-CcccccccccccccCCCccceeeEEEeEeeEcC-CCcEEEEEEcCCcEEEEEcccc---
Q 010871 326 GQLLFCGDAQGCIYSISMES-HSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA-GGPVLLTCTQDGNLSFFSVALE--- 400 (498)
Q Consensus 326 ~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~-~~~~l~t~s~dg~i~iwd~~~~--- 400 (498)
+ +++++.+|.|++||++. ....... ....+...+.++.|. | ++.+|++++.||.|++|++...
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~i~~i~~~-----~~~~~~l~~~~~dg~i~i~~~~~~~~~ 229 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTI-----EESGLKYQIRDVALL-----PKEQEGYACSSIDGRVAVEFFDDQGDD 229 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEE-----EECSCSSCEEEEEEC-----SGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred c--EEEEeCCCeEEEEECCcccccccee-----eecCCCCceeEEEEC-----CCCCCEEEEEecCCcEEEEEEcCCCcc
Confidence 7 99999999999999976 3322111 124566778888776 8 9999999999999999999765
Q ss_pred --ccceeeEeEeeccC----CceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCC-CCCeEEEEE
Q 010871 401 --IQGYLTFRCSLKLA----PRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGH-RFPVVAVAW 473 (498)
Q Consensus 401 --~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h-~~~V~~l~~ 473 (498)
......+....... .......+.|+| ++++|++|+.||.|++||+.++ ..+..+.+| ...|++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~h~~~v~~~~- 301 (342)
T 1yfq_A 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-----RHKFLYTAGSDGIISCWNLQTR--KKIKNFAKFNEDSVVKIA- 301 (342)
T ss_dssp TTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-----TTCCEEEEETTSCEEEEETTTT--EEEEECCCCSSSEEEEEE-
T ss_pred cccccceeeecccccccccccceeEEEEEEcC-----CCCEEEEecCCceEEEEcCccH--hHhhhhhcccCCCceEec-
Confidence 12222221111100 001122235554 9999999999999999999984 467889998 99999999
Q ss_pred cCCCCEEEEEeCCCe
Q 010871 474 NHGENLLASSDLYGI 488 (498)
Q Consensus 474 sp~~~~l~s~~~Dg~ 488 (498)
|++++|++++.||.
T Consensus 302 -~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 302 -CSDNILCLATSDDT 315 (342)
T ss_dssp -ECSSEEEEEEECTH
T ss_pred -CCCCeEEEEecCCc
Confidence 99999999999999
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=284.86 Aligned_cols=282 Identities=13% Similarity=0.240 Sum_probs=227.9
Q ss_pred ecccccEEEEEEecCCCC-EEEEEeCCCcEEEEEc----CCCCc------eeEEeec----------CCCCeEEEEEccC
Q 010871 184 DQCKAAVTILKFGHMSSD-LLAYGASDGTLTVCTV----SDPPK------VIKLLNG----------HSKDVTDFDFSSN 242 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~-~lasg~~dg~i~iwd~----~~~~~------~~~~~~~----------h~~~V~~l~~s~~ 242 (498)
..|.+.|++++|+| ++. +||+|+.||.|+||++ .+ +. ....+.. |.+.|.+++|+|+
T Consensus 42 ~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 42 IVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQE-GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCC-ccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 44568999999999 788 9999999999999999 76 44 3444444 7889999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec-CCC----
Q 010871 243 NQYIASSSMDKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV-DSE---- 316 (498)
Q Consensus 243 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~---- 316 (498)
+++|++++.||.|++|| .+++.+..+..| ..+.+++|+|+ +.+|++++.||.|++||+.+++.+..+.. ...
T Consensus 120 ~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp SSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTT-SSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 99999999999999999 677888888877 47889999995 57888999999999999999998888753 333
Q ss_pred -----------eEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEE
Q 010871 317 -----------VTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT 385 (498)
Q Consensus 317 -----------i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t 385 (498)
+.+++|++++ .+++++.+|.|++||+....... ....|...|.++.|. +++++|++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~-------~~~~~~~~i~~~~~~-----~~~~~l~~ 264 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTG-------KLIGHHGPISVLEFN-----DTNKLLLS 264 (425)
T ss_dssp --------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSE-------EECCCSSCEEEEEEE-----TTTTEEEE
T ss_pred eeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceee-------eeccCCCceEEEEEC-----CCCCEEEE
Confidence 8899999874 58899999999999997643221 135678889888887 99999999
Q ss_pred EEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCC
Q 010871 386 CTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHR 465 (498)
Q Consensus 386 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~ 465 (498)
++.|+.|++||+........ ...+...+ ..+.|+| ++ ++++++.||.|++||+.++ ..+..+..|.
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~----~~~~~~~i--~~~~~~~-----~~-~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~ 330 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNC----FYGHSQSI--VSASWVG-----DD-KVISCSMDGSVRLWSLKQN--TLLALSIVDG 330 (425)
T ss_dssp EETTSCEEEECSSSBSCSEE----ECCCSSCE--EEEEEET-----TT-EEEEEETTSEEEEEETTTT--EEEEEEECTT
T ss_pred EcCCCEEEEEECCCCccceE----ecCCCccE--EEEEECC-----CC-EEEEEeCCCcEEEEECCCC--cEeEecccCC
Confidence 99999999999986432111 11122222 2335655 78 9999999999999999984 4678888999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 466 FPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 466 ~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
..|.+++|+|++++|++++.||.|++|++.+
T Consensus 331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred ccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 9999999999999999999999999999864
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.7e-35 Score=290.45 Aligned_cols=288 Identities=14% Similarity=0.105 Sum_probs=226.8
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
.+++++|+| ++++|++|+.||.|++||+.+ ......+..| ..+....|++++++|++|+.||.|++||+.+++....
T Consensus 58 ~~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 134 (420)
T 3vl1_A 58 AGKGNTFEK-VGSHLYKARLDGHDFLFNTII-RDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI 134 (420)
T ss_dssp CCTTCEEEE-EETTEEEEEETTEEEEEECCS-EETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE
T ss_pred cccceeeee-cCCeEEEEEcCCcEEEEEecc-cceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee
Confidence 456799999 899999999999999999987 5555555555 4455567899999999999999999999999998888
Q ss_pred EecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCC
Q 010871 269 IYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESH 346 (498)
Q Consensus 269 ~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~ 346 (498)
+..| ..+.+++|+|+ +.+|++|+.|+.|++||+.+++.+..+. |...|.+++|+|++++|++++.||.|++||++..
T Consensus 135 ~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 213 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213 (420)
T ss_dssp TTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred cccccCccEEEEECCC-CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence 7666 57889999995 5799999999999999999998888884 8899999999999999999999999999998755
Q ss_pred cccccccccccccCCCccceeeEEEe----------------EeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEe
Q 010871 347 SGALSRSHRHRTTGKRKCPVTTVQYR----------------SFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCS 410 (498)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~i~~~~~~----------------~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~ 410 (498)
....... ....+...+.++.+. .++++|++++|++++.||.|++||++.... .....
T Consensus 214 ~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~ 286 (420)
T 3vl1_A 214 TTIHTFN----RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ---TIQLP 286 (420)
T ss_dssp EEEEEEC----BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE---EEEEC
T ss_pred ceeEEee----cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce---eEEcc
Confidence 4322211 113455556666552 245569999999999999999999986422 11111
Q ss_pred eccCCceeeeEEEEeeeeeccCCC-EEEEEeCCCcEEEEECCCCCccceeeecC-CCCCeEEEEEcCCCCEEEEEeCCCe
Q 010871 411 LKLAPRVHSIRASFCPLLSLEKGE-YIVAGSEDSNVYFYDLAKPKHSCVNKLQG-HRFPVVAVAWNHGENLLASSDLYGI 488 (498)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~dg~I~iwd~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~Dg~ 488 (498)
..+...+ ..+.|+| ++. +|++|+.||.|++||+.+++. ++..+.+ |...|.++.| +++.+|++++.||.
T Consensus 287 ~~~~~~v--~~~~~~~-----~~~~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~ 357 (420)
T 3vl1_A 287 SKFTCSC--NSLTVDG-----NNANYIYAGYENGMLAQWDLRSPEC-PVGEFLINEGTPINNVYF-AAGALFVSSGFDTS 357 (420)
T ss_dssp CTTSSCE--EEEEECS-----SCTTEEEEEETTSEEEEEETTCTTS-CSEEEEESTTSCEEEEEE-ETTEEEEEETTTEE
T ss_pred cccCCCc--eeEEEeC-----CCCCEEEEEeCCCeEEEEEcCCCcC-chhhhhccCCCCceEEEe-CCCCEEEEecCCcc
Confidence 1122222 2335665 888 999999999999999998642 3566665 6777888865 47889999999999
Q ss_pred EEEeecCC
Q 010871 489 VIVWKRAK 496 (498)
Q Consensus 489 i~iW~~~~ 496 (498)
|++|++..
T Consensus 358 v~iw~~~~ 365 (420)
T 3vl1_A 358 IKLDIISD 365 (420)
T ss_dssp EEEEEECC
T ss_pred EEEEeccC
Confidence 99999875
No 50
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.8e-34 Score=321.05 Aligned_cols=295 Identities=17% Similarity=0.236 Sum_probs=243.9
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
..+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+ +..+..+.+|.+.|.+++|+|++++|++++.||+|++||+
T Consensus 609 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCC-CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 35789999999999999 999999999999999999998 7888899999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCC-CeEEEEEEcC-CCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCe
Q 010871 261 TKGDCIRVIYGVS-SQLCIRFHPV-NNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGC 337 (498)
Q Consensus 261 ~~~~~~~~~~~~~-~v~~i~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~ 337 (498)
.+++.+..+.+|. .+.+++|+|+ +..++++|+.||.|++||+.+++.+..+ .|...|.+++|+|++++|++++.||.
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 9999999998885 7889999996 3468899999999999999999998887 58899999999999999999999999
Q ss_pred EEEEEccCCcccccccccc------cccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEee
Q 010871 338 IYSISMESHSGALSRSHRH------RTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSL 411 (498)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~ 411 (498)
|++||+............. .........+.++.|+ |++..+++++ ++.+.+||+..+.. ......
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~dg~~l~~~~-~~~v~~~d~~~~~~---~~~~~~ 837 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS-----ADGDKIIVAA-KNKVLLFDIHTSGL---LAEIHT 837 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC-----TTSSEEEEEE-TTEEEEEETTTCCE---EEEEEC
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEEC-----CCCCEEEEEc-CCcEEEEEecCCCc---eeEEcC
Confidence 9999987543322111100 0011122345555554 9999999887 68999999986532 111111
Q ss_pred ccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 010871 412 KLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIV 491 (498)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~i 491 (498)
.+...+. .+.|+| ++.++++|+.||.|++||+.++ ..+..+.+|...|++++|+|++.+|++++.||.|++
T Consensus 838 ~~~~~v~--~~~~sp-----~~~~l~~~~~dg~v~vwd~~~~--~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~v 908 (1249)
T 3sfz_A 838 GHHSTIQ--YCDFSP-----YDHLAVIALSQYCVELWNIDSR--LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908 (1249)
T ss_dssp SSSSCCC--EEEECS-----STTEEEEECSSSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCCceE--EEEEcC-----CCCEEEEEeCCCeEEEEEcCCC--ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEE
Confidence 2222222 235555 9999999999999999999984 468889999999999999999999999999999999
Q ss_pred eecC
Q 010871 492 WKRA 495 (498)
Q Consensus 492 W~~~ 495 (498)
|++.
T Consensus 909 w~~~ 912 (1249)
T 3sfz_A 909 WETK 912 (1249)
T ss_dssp EEHH
T ss_pred EEcc
Confidence 9965
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.4e-35 Score=277.31 Aligned_cols=281 Identities=13% Similarity=0.193 Sum_probs=226.8
Q ss_pred ccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-
Q 010871 186 CKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD- 264 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~- 264 (498)
|.++|.+++|+| +|++++++..++.+.+|.... ........+|...|.+++|+|++++|++++ ||.|++||+.++.
T Consensus 8 ~~~~v~~~~~s~-dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPR-HARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECS-SSCEEECCCCTTSSSSTTCCS-EEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECC-CCCEEEeecCCCcEeccccCC-ccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 467899999999 999999998888887776655 333334457999999999999999999999 9999999998764
Q ss_pred --EEEEEe--cC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc--EEEEe-ecCCCeEEEEEcCCCCEEEEEcCCC
Q 010871 265 --CIRVIY--GV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR--IIKKL-VVDSEVTSMDHDHTGQLLFCGDAQG 336 (498)
Q Consensus 265 --~~~~~~--~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg 336 (498)
.+..+. .+ ..+.+++|+|+ +.+|++++.||.|++||+.+++ ....+ .+...|.+++|+|++++|++++.+|
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeecccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC
Confidence 333333 33 57889999994 5788999999999999999887 34444 4778899999999999999999999
Q ss_pred eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCc
Q 010871 337 CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPR 416 (498)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 416 (498)
.|++||++...... ....|...+.++.|. |++++|++++.||.|++||++.... .........
T Consensus 164 ~v~~~d~~~~~~~~-------~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~~~d~~~~~~-----~~~~~~~~~ 226 (337)
T 1gxr_A 164 NIAVWDLHNQTLVR-------QFQGHTDGASCIDIS-----NDGTKLWTGGLDNTVRSWDLREGRQ-----LQQHDFTSQ 226 (337)
T ss_dssp CEEEEETTTTEEEE-------EECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTTEE-----EEEEECSSC
T ss_pred cEEEEeCCCCceee-------eeecccCceEEEEEC-----CCCCEEEEEecCCcEEEEECCCCce-----EeeecCCCc
Confidence 99999987543221 135677888888877 9999999999999999999986522 111222232
Q ss_pred eeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 417 VHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+ ....|+| ++++|++++.++.|++||+.+++ ...+..|...|.+++|+|++++|++++.||.|++|++++
T Consensus 227 v--~~~~~s~-----~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 227 I--FSLGYCP-----TGEWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp E--EEEEECT-----TSSEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred e--EEEEECC-----CCCEEEEEcCCCcEEEEECCCCC---eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 2 2235555 99999999999999999999854 456788999999999999999999999999999999986
Q ss_pred C
Q 010871 497 T 497 (498)
Q Consensus 497 ~ 497 (498)
+
T Consensus 297 ~ 297 (337)
T 1gxr_A 297 G 297 (337)
T ss_dssp C
T ss_pred C
Confidence 5
No 52
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-36 Score=295.74 Aligned_cols=293 Identities=13% Similarity=0.213 Sum_probs=230.8
Q ss_pred cccEEEEEEecCCCC-EEEEE----------eCCCcEEEEEcCCCCc--eeEEeecCCCCeEEEEEccCCCEEEEEeCCC
Q 010871 187 KAAVTILKFGHMSSD-LLAYG----------ASDGTLTVCTVSDPPK--VIKLLNGHSKDVTDFDFSSNNQYIASSSMDK 253 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~-~lasg----------~~dg~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg 253 (498)
...|.+++|+| ++. +||+| +.||.|+|||+.+... ....+ .|...|.+++|+|++++|++++.||
T Consensus 12 ~~~v~~~~~sp-~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 12 FSRTATFAWSH-DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEESCBCCBCS-SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhcceEeeCC-CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 45789999999 665 99999 8999999999987321 33333 5899999999999999999999999
Q ss_pred cEEEEECCC----CcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc------EEEEe----ecCCCeE
Q 010871 254 TVRVWELTK----GDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR------IIKKL----VVDSEVT 318 (498)
Q Consensus 254 ~v~iwd~~~----~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~------~~~~~----~~~~~i~ 318 (498)
.|++||+.+ .+.+..+..|. .+.+++|+|+++.+|++++.||.|++||+.+++ ....+ .|...|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999987 45777777774 788999999767899999999999999999886 33332 4778999
Q ss_pred EEEEcCC-CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC-cEEEEEEcCC---cEE
Q 010871 319 SMDHDHT-GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG-PVLLTCTQDG---NLS 393 (498)
Q Consensus 319 ~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~-~~l~t~s~dg---~i~ 393 (498)
+++|+|+ +.+|++++.||.|++||++.......... .....+|...|.++.|+ |++ .+|++++.|+ .|+
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~d~~~~~i~ 243 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY-TSPNSGIKQQLSVVEWH-----PKNSTRVATATGSDNDPSIL 243 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC-CCCSSCCCCCEEEEEEC-----SSCTTEEEEEECCSSSCCCC
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec-cccccccCCceEEEEEC-----CCCCCEEEEEECCCCCceEE
Confidence 9999999 78999999999999999976543222111 01112336788888887 886 6899999999 999
Q ss_pred EEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEE
Q 010871 394 FFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAW 473 (498)
Q Consensus 394 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~ 473 (498)
+||++.......... ..+...+ ..+.|+| .++.+|++++.||.|++||+.++ .++..+.+|...|++++|
T Consensus 244 ~~d~~~~~~~~~~~~--~~~~~~v--~~~~~s~----~~~~~l~s~~~dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~ 313 (416)
T 2pm9_A 244 IWDLRNANTPLQTLN--QGHQKGI--LSLDWCH----QDEHLLLSSGRDNTVLLWNPESA--EQLSQFPARGNWCFKTKF 313 (416)
T ss_dssp EEETTSTTSCSBCCC--SCCSSCE--EEEEECS----SCSSCEEEEESSSEEEEECSSSC--CEEEEEECSSSCCCCEEE
T ss_pred EEeCCCCCCCcEEee--cCccCce--eEEEeCC----CCCCeEEEEeCCCCEEEeeCCCC--ccceeecCCCCceEEEEE
Confidence 999986422111110 0112222 2224443 28999999999999999999985 468889999999999999
Q ss_pred cCCC-CEEEEEeCCCeEEEeecCCC
Q 010871 474 NHGE-NLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 474 sp~~-~~l~s~~~Dg~i~iW~~~~~ 497 (498)
+|++ .+|++++.||.|++|++.+.
T Consensus 314 s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 314 APEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCCCCCEEEEEecCCcEEEEEccCC
Confidence 9999 89999999999999999764
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-33 Score=281.58 Aligned_cols=282 Identities=16% Similarity=0.264 Sum_probs=227.1
Q ss_pred eeeeeccccc-EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 180 HCIFDQCKAA-VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 180 ~~~~~~h~~~-V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
...+.+|.+. ++|+.+ ++++|++|+.||.|++||+.+ ++.+..+.+|.+.|.+++|++++ +|++|+.||+|++|
T Consensus 114 ~~~l~~h~~~v~~~~~~---~~~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEEECCSSSCEEEEEE---ETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred eEEEcCCCCCcEEEEEE---CCCEEEEEcCCCcEEEEECCC-CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3467899887 477777 457999999999999999988 78899999999999999999988 99999999999999
Q ss_pred ECCCCcEEEEEecC-CCeEEEEEEc-CCCcEEEEEeCCCcEEEEEcCCCcEE-----------------------EEe-e
Q 010871 259 ELTKGDCIRVIYGV-SSQLCIRFHP-VNNNFLSVGNANKEITVFNFSTGRII-----------------------KKL-V 312 (498)
Q Consensus 259 d~~~~~~~~~~~~~-~~v~~i~~~~-~~~~~l~~g~~dg~i~iwd~~~~~~~-----------------------~~~-~ 312 (498)
|+.+++++..+.+| ..+.++.|.+ .++.++++|+.||.|++||+.++... ..+ .
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 99999999999877 4788999986 35589999999999999999877532 222 4
Q ss_pred cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcE
Q 010871 313 VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNL 392 (498)
Q Consensus 313 ~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i 392 (498)
|...+.++ +++++++++|+.||.|++||+....... ....|...|.++.|. +++++|++++.||.|
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~-------~~~~~~~~v~~~~~~-----~~~~~l~sg~~dg~i 334 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY-------ILSGHTDRIYSTIYD-----HERKRCISASMDTTI 334 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE-------EECCCSSCEEEEEEE-----TTTTEEEEEETTSCE
T ss_pred ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE-------EecCCCCCEEEEEEc-----CCCCEEEEEeCCCcE
Confidence 66677766 5778999999999999999987543221 235788889988887 999999999999999
Q ss_pred EEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEE
Q 010871 393 SFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVA 472 (498)
Q Consensus 393 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~ 472 (498)
++||+.++.. ......+...+..+ .+ ++.+|++|+.||.|++||+.++. ..... .|...+..++
T Consensus 335 ~vwd~~~~~~----~~~~~~h~~~v~~~--~~-------~~~~l~s~s~dg~v~vwd~~~~~--~~~~~-~~~~~~~~~~ 398 (464)
T 3v7d_B 335 RIWDLENGEL----MYTLQGHTALVGLL--RL-------SDKFLVSAAADGSIRGWDANDYS--RKFSY-HHTNLSAITT 398 (464)
T ss_dssp EEEETTTTEE----EEEECCCSSCEEEE--EE-------CSSEEEEEETTSEEEEEETTTCC--EEEEE-ECTTCCCEEE
T ss_pred EEEECCCCcE----EEEEeCCCCcEEEE--EE-------cCCEEEEEeCCCcEEEEECCCCc--eeeee-cCCCCccEEE
Confidence 9999986421 11111122222222 22 57899999999999999999854 23333 3667788899
Q ss_pred EcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 473 WNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 473 ~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
|++++.+|++|+ ||.|++||++++
T Consensus 399 ~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 399 FYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEECSSEEEEEE-TTEEEEEETTTC
T ss_pred EEeCCCEEEEec-CCeEEEEECCCC
Confidence 999999999998 899999999875
No 54
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4e-34 Score=271.36 Aligned_cols=274 Identities=16% Similarity=0.242 Sum_probs=210.9
Q ss_pred eeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCC
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSK 232 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~ 232 (498)
..+....+..+++|....... .+......|.+|...|++++|+| ++.+|++|+.|++|+|||+.+ ++....+.+|..
T Consensus 32 ~l~s~s~D~~v~~W~~~~~~~-~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~-~~~~~~~~~h~~ 108 (319)
T 3frx_A 32 LLLSASRDKTLISWKLTGDDQ-KFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVAT-GETYQRFVGHKS 108 (319)
T ss_dssp EEEEEETTSEEEEEEEEEETT-EEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-TEEEEEEECCSS
T ss_pred EEEEecCCccEEEecCCCCCc-cccccceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCC-CCeeEEEccCCC
Confidence 344555556666665432111 11112346899999999999999 999999999999999999998 788899999999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCC-----CcEEEEEeCCCcEEEEEcCCCc
Q 010871 233 DVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVN-----NNFLSVGNANKEITVFNFSTGR 306 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~-----~~~l~~g~~dg~i~iwd~~~~~ 306 (498)
.|.+++|+|++.+|++|+.|++|++||+. ++++..+.+|. .+.++.|.|.. ...+++++.|+.|++||+++++
T Consensus 109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 187 (319)
T 3frx_A 109 DVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187 (319)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence 99999999999999999999999999996 56677777764 67899998853 3489999999999999999998
Q ss_pred EEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEE
Q 010871 307 IIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT 385 (498)
Q Consensus 307 ~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t 385 (498)
....+ .|...|.+++|+|++++|++|+.||.|++||+......... .+...|.++.|+ |++.+|++
T Consensus 188 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~v~~~~~s-----p~~~~la~ 254 (319)
T 3frx_A 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL--------SAQDEVFSLAFS-----PNRYWLAA 254 (319)
T ss_dssp EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE--------ECCSCEEEEEEC-----SSSSEEEE
T ss_pred hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------cCCCcEEEEEEc-----CCCCEEEE
Confidence 88777 58899999999999999999999999999998754332211 123467777666 99999988
Q ss_pred EEcCCcEEEEEccccccceeeEeEeeccCC-----ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 386 CTQDGNLSFFSVALEIQGYLTFRCSLKLAP-----RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 386 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
++.+ .+++|++..... .......... ......++|+| +|++|++|+.||.|++||+.+
T Consensus 255 ~~~~-~i~v~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~sp-----dg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 255 ATAT-GIKVFSLDPQYL---VDDLRPEFAGYSKAAEPHAVSLAWSA-----DGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EETT-EEEEEEETTEEE---EEEECCCCTTCCGGGCCCEEEEEECT-----TSSEEEEEETTSCEEEEEEEE
T ss_pred EcCC-CcEEEEeCcCee---eeccCccccccccCcCcceeEEEECC-----CCCEEEEeecCceEEEEEEee
Confidence 8755 599999874321 1111111110 11122345555 999999999999999999875
No 55
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.9e-34 Score=304.84 Aligned_cols=290 Identities=14% Similarity=0.169 Sum_probs=240.4
Q ss_pred ceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 179 MHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 179 ~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
....|.+|.+.|++++|+| ++.+||+|+.||.|+|||+.+ +.....+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cceeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCC-CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 4567899999999999999 999999999999999999988 78888999999999999999999999999999999999
Q ss_pred ECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-cEEEEe-ecCCCeEEEEEcC-CCCEEEEEcC
Q 010871 259 ELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-RIIKKL-VVDSEVTSMDHDH-TGQLLFCGDA 334 (498)
Q Consensus 259 d~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~-~~~~~i~~l~~~~-~~~~l~~~~~ 334 (498)
|+.+++.+..+..|. .+.+++|+|+ +.+|++++.||.|++||+.++ .....+ .|...|.+++|+| ++..|++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSS-SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCC-CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999998774 7889999995 468889999999999999987 555555 4788999999999 8889999999
Q ss_pred CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC--CCcEEEEEEcCCcEEEEEccccccceeeEeEeec
Q 010871 335 QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA--GGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLK 412 (498)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~--~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 412 (498)
||.|++||+......... ...+...+..+.|. | ++.+|++++.||.|++||+..+.. ......
T Consensus 162 dg~v~vwd~~~~~~~~~~------~~~~~~~v~~~~~~-----~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~ 226 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTL------TTGQERGVNYVDYY-----PLPDKPYMITASDDLTIKIWDYQTKSC----VATLEG 226 (814)
T ss_dssp TSEEEEEETTCSSCSEEE------ECCCTTCCCEEEEC-----CSTTCCEEEEECTTSEEEEEETTTTEE----EEEEEC
T ss_pred CCeEEEEECCCCcceeEE------ecCCCCCEEEEEEE-----ECCCCCEEEEEeCCCEEEEEECCCCcE----EEEEcC
Confidence 999999998654432221 13344677777776 6 899999999999999999975421 111111
Q ss_pred cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCC--EEEEEeCCCeEE
Q 010871 413 LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGEN--LLASSDLYGIVI 490 (498)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~~~Dg~i~ 490 (498)
+...+. ...|+| ++.+|++|+.||.|++||+.++ ..+..+..|...|.+++|+|++. +++++ .|+.+.
T Consensus 227 ~~~~v~--~~~~~~-----~~~~l~~~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~ 296 (814)
T 3mkq_A 227 HMSNVS--FAVFHP-----TLPIIISGSEDGTLKIWNSSTY--KVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFT 296 (814)
T ss_dssp CSSCEE--EEEECS-----SSSEEEEEETTSCEEEEETTTC--SEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEE
T ss_pred CCCCEE--EEEEcC-----CCCEEEEEeCCCeEEEEECCCC--cEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEE
Confidence 222222 235555 9999999999999999999984 46788889999999999999987 45544 577888
Q ss_pred EeecCC
Q 010871 491 VWKRAK 496 (498)
Q Consensus 491 iW~~~~ 496 (498)
+|++..
T Consensus 297 ~~~~~~ 302 (814)
T 3mkq_A 297 VLSLGN 302 (814)
T ss_dssp EEECSC
T ss_pred EEEcCC
Confidence 998764
No 56
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-34 Score=307.81 Aligned_cols=328 Identities=10% Similarity=0.095 Sum_probs=234.0
Q ss_pred eeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCcee--------
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVI-------- 224 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~-------- 224 (498)
..+....+..+++|........ ..+. |.+.|++++|+| ++++|++|+.||.|++||+.+ ....
T Consensus 71 ~L~S~s~D~~v~lWd~~~~~~~------~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~-~~~~~~~i~~~~ 141 (902)
T 2oaj_A 71 YLVVINAKDTVYVLSLYSQKVL------TTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDR-DQLSSFKLDNLQ 141 (902)
T ss_dssp EEEEEETTCEEEEEETTTCSEE------EEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTT-TEEEEEEECCHH
T ss_pred EEEEEECcCeEEEEECCCCcEE------EEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCC-Cccccceecccc
Confidence 3445556677777766543221 1222 668999999999 999999999999999999987 4432
Q ss_pred ---EEeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCcEEEEEecC-------------------CCeEEEEEE
Q 010871 225 ---KLLNGHSKDVTDFDFSSN-NQYIASSSMDKTVRVWELTKGDCIRVIYGV-------------------SSQLCIRFH 281 (498)
Q Consensus 225 ---~~~~~h~~~V~~l~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-------------------~~v~~i~~~ 281 (498)
..+.+|.+.|.+++|+|+ +..|++|+.||.| +||+.+++++..+..+ ..+.+++|+
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 234679999999999996 4789999999999 9999999999888766 568999999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCCCcEEEE--ee-----------------cCCCeEEEEEc----CCC-CEEEEEcCC--
Q 010871 282 PVNNNFLSVGNANKEITVFNFSTGRIIKK--LV-----------------VDSEVTSMDHD----HTG-QLLFCGDAQ-- 335 (498)
Q Consensus 282 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~-----------------~~~~i~~l~~~----~~~-~~l~~~~~d-- 335 (498)
|+ +.+|++|+.||.|++||+++++++.. +. +...|.+++|+ |++ .+|++|+.+
T Consensus 221 pd-g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~ 299 (902)
T 2oaj_A 221 PN-SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISR 299 (902)
T ss_dssp TT-SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred CC-CCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCC
Confidence 96 57999999999999999999988764 21 13469999995 443 456666554
Q ss_pred ---CeEEEEEccCC----------------------------cccc------------------------------cccc
Q 010871 336 ---GCIYSISMESH----------------------------SGAL------------------------------SRSH 354 (498)
Q Consensus 336 ---g~i~i~d~~~~----------------------------~~~~------------------------------~~~~ 354 (498)
..+.+|++... .... ....
T Consensus 300 ~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~ 379 (902)
T 2oaj_A 300 GDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETM 379 (902)
T ss_dssp SSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEE
T ss_pred CCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEE
Confidence 26777763100 0000 0000
Q ss_pred c-------------ccccCCCccceeeEEEeE-----------------------------eeEcCCCcEEEEEEcCCcE
Q 010871 355 R-------------HRTTGKRKCPVTTVQYRS-----------------------------FSLLAGGPVLLTCTQDGNL 392 (498)
Q Consensus 355 ~-------------~~~~~~~~~~i~~~~~~~-----------------------------~~~s~~~~~l~t~s~dg~i 392 (498)
. ......|...|+++.+.. ++++|++++|++|+.|++|
T Consensus 380 ~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtV 459 (902)
T 2oaj_A 380 LYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSV 459 (902)
T ss_dssp ETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEE
T ss_pred ECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcE
Confidence 0 001122335566665531 3456899999999999999
Q ss_pred EEEEccccccce-eeEeEeec----cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCc------------
Q 010871 393 SFFSVALEIQGY-LTFRCSLK----LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKH------------ 455 (498)
Q Consensus 393 ~iwd~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~------------ 455 (498)
++||+..+.... ..+..... .........++|+| +|++||+|+.||+|+|||+.+++.
T Consensus 460 rlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-----dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~ 534 (902)
T 2oaj_A 460 RIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-----ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDL 534 (902)
T ss_dssp EEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-----TTTEEEEEETTSCEEEEEEEECCC------------
T ss_pred EEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-----CCCeEEEEecCcEEEEEEecCccccCccccCCCccc
Confidence 999998653210 00110000 01111222335665 999999999999999999986521
Q ss_pred -------------------------------cceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 456 -------------------------------SCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 456 -------------------------------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
.++..+.+|.+.|++|+|+|+| +||+|+.||+|+|||++++
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 535 EMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp ---CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred ceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 2467788999999999999999 9999999999999998764
No 57
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=285.80 Aligned_cols=289 Identities=14% Similarity=0.280 Sum_probs=216.0
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc----------eeEEeecCC------------CCeEEEEEccC
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK----------VIKLLNGHS------------KDVTDFDFSSN 242 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~----------~~~~~~~h~------------~~V~~l~~s~~ 242 (498)
.|.+.|++|+|+| ++++||+|+.||.|+||++.+... ....+.+|. ..|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 4578999999999 999999999999999999987321 577889998 88999999999
Q ss_pred C--CEEEEEeCCCcEEEEECCCCcEE---------------------------------------EEE-ecC-CCeEEEE
Q 010871 243 N--QYIASSSMDKTVRVWELTKGDCI---------------------------------------RVI-YGV-SSQLCIR 279 (498)
Q Consensus 243 ~--~~l~s~s~dg~v~iwd~~~~~~~---------------------------------------~~~-~~~-~~v~~i~ 279 (498)
+ .+|++++.||+|++||+.++... ..+ .+| ..+.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 79999999999999998765432 122 334 4788999
Q ss_pred EEcCCCcEEEEEeCCCcEEEEEcCC-CcEEEEe--------ecCCCeEEEEEcCCC-CEEEEEcCCCeEEEEEccCCccc
Q 010871 280 FHPVNNNFLSVGNANKEITVFNFST-GRIIKKL--------VVDSEVTSMDHDHTG-QLLFCGDAQGCIYSISMESHSGA 349 (498)
Q Consensus 280 ~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~--------~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~ 349 (498)
|+|+ +.+|++| .|+.|++||+++ ++.+..+ .|...|.+++|+|++ .+|++|+.||.|++||++.....
T Consensus 185 ~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 185 INSD-YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp ECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EcCC-CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 9995 5788888 799999999984 4444432 477889999999998 99999999999999999765431
Q ss_pred ccccccccccCCCcc------------ceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCc-
Q 010871 350 LSRSHRHRTTGKRKC------------PVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPR- 416 (498)
Q Consensus 350 ~~~~~~~~~~~~~~~------------~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~- 416 (498)
... ...+..|.. .|.++.|+ |++++|++++. +.|++||++........+.........
T Consensus 263 ~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l 333 (447)
T 3dw8_B 263 DRH---SKLFEEPEDPSNRSFFSEIISSISDVKFS-----HSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKL 333 (447)
T ss_dssp CTT---CEEECCC-----CCHHHHHTTCEEEEEEC-----TTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTH
T ss_pred cce---eeEeccCCCccccccccccCceEEEEEEC-----CCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccc
Confidence 100 111233443 78888776 99999999999 999999998522211111111100000
Q ss_pred --------e-eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec-------------------------
Q 010871 417 --------V-HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ------------------------- 462 (498)
Q Consensus 417 --------~-~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~------------------------- 462 (498)
+ ....++|+| ++.+|++|+.||.|++||+.+++. + .+.
T Consensus 334 ~~~~~~~~i~~~~~~~~s~-----~~~~l~s~s~dg~v~iwd~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNG-----SDSVVMTGSYNNFFRMFDRNTKRD--I-TLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp HHHHHTSGGGCCCCEEECT-----TSSEEEEECSTTEEEEEETTTCCE--E-EEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred cccccccccccceEEEECC-----CCCEEEEeccCCEEEEEEcCCCcc--e-eeeecccccccccccCCccccccCCccc
Confidence 0 011245665 999999999999999999998652 1 222
Q ss_pred --------CCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 463 --------GHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 463 --------~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
.+...|.+++|+|++++||+++.++ +++|.-
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2345789999999999999998775 777764
No 58
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-33 Score=316.52 Aligned_cols=322 Identities=17% Similarity=0.232 Sum_probs=254.8
Q ss_pred eeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCC
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSK 232 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~ 232 (498)
..+....++.+++|...... ....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+ ++.+..+.+|..
T Consensus 629 ~l~s~~~d~~i~vw~~~~~~------~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~ 700 (1249)
T 3sfz_A 629 RIASCGADKTLQVFKAETGE------KLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSAT-GKLVHTYDEHSE 700 (1249)
T ss_dssp EEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-CCEEEEEECCSS
T ss_pred EEEEEeCCCeEEEEECCCCC------EEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCC-CceEEEEcCCCC
Confidence 34444556666666554432 2335679999999999999 999999999999999999998 788999999999
Q ss_pred CeEEEEEcc--CCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEE
Q 010871 233 DVTDFDFSS--NNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIK 309 (498)
Q Consensus 233 ~V~~l~~s~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 309 (498)
.|.+++|+| ++.++++|+.||.|++||+.+++++..+.+|. .+.+++|+|+ +.++++++.||.|++||+.+++...
T Consensus 701 ~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~v~vwd~~~~~~~~ 779 (1249)
T 3sfz_A 701 QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERK 779 (1249)
T ss_dssp CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS-TTEEEEEESSSEEEEEEGGGTEEEE
T ss_pred cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC-CCEEEEEECCCeEEEEeCCCCcccc
Confidence 999999999 45689999999999999999999999998875 7889999995 5799999999999999998775544
Q ss_pred Ee--------------------------------------------------------ecCCCeEEEEEcCCCCEEEEEc
Q 010871 310 KL--------------------------------------------------------VVDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 310 ~~--------------------------------------------------------~~~~~i~~l~~~~~~~~l~~~~ 333 (498)
.+ .+...|.+++|+|++.++++++
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 859 (1249)
T 3sfz_A 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859 (1249)
T ss_dssp EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC
T ss_pred eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe
Confidence 32 2456788999999999999999
Q ss_pred CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceee-----Ee
Q 010871 334 AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLT-----FR 408 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~-----~~ 408 (498)
.+|.|++|++...... ....+|...|.++.|+ |++.+|++++.||.|++|++......... ..
T Consensus 860 ~dg~v~vwd~~~~~~~-------~~~~~h~~~v~~v~~s-----pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~ 927 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLKV-------ADCRGHLSWVHGVMFS-----PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID 927 (1249)
T ss_dssp SSSCEEEEETTTTEEE-------EEECCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEE
T ss_pred CCCeEEEEEcCCCcee-------eecCCCccceEEEEEC-----CCCCEEEEEeCCCeEEEEEccccceeeeecccceee
Confidence 9999999998754322 2236788899988887 99999999999999999998642111000 00
Q ss_pred E--------------------eeccCCce-eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCC
Q 010871 409 C--------------------SLKLAPRV-HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFP 467 (498)
Q Consensus 409 ~--------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~ 467 (498)
. ........ .........+.++++++++++|+.+|.|++||+.++. .+..+.+|...
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~--~~~~~~~h~~~ 1005 (1249)
T 3sfz_A 928 VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR--VFSSGVGHKKA 1005 (1249)
T ss_dssp EEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS--CEEECCCCSSC
T ss_pred EEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc--eeeecccCCCc
Confidence 0 00000000 0000123334455699999999999999999999854 67788899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 468 VVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 468 V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
|++++|+|++++|++++.||.|++|++.++
T Consensus 1006 v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp CCCEEECSSSSCEEEECSSSBEEEEETTTT
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 999999999999999999999999998764
No 59
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.4e-33 Score=268.54 Aligned_cols=270 Identities=16% Similarity=0.232 Sum_probs=215.7
Q ss_pred CceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC---ceeEE
Q 010871 150 SHRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP---KVIKL 226 (498)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~---~~~~~ 226 (498)
.....+....++.+++|....... ...+..|...|.+++|+| ++.+|++|+.|+.|++|++.+.. .....
T Consensus 66 d~~~l~s~s~Dg~v~iWd~~~~~~------~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 138 (340)
T 1got_B 66 DSRLLLSASQDGKLIIWDSYTTNK------VHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCE------EEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCCc------ceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEECccCCCcceeEEE
Confidence 334555666677777776544332 234678899999999999 99999999999999999998632 45667
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC
Q 010871 227 LNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTG 305 (498)
Q Consensus 227 ~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~ 305 (498)
+.+|.+.|.++.|++++ .|++++.|++|++||+.+++.+..+.+|. .+.+++|+|+ +.++++|+.|+.|++||++++
T Consensus 139 ~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~ 216 (340)
T 1got_B 139 LAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREG 216 (340)
T ss_dssp EECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTC
T ss_pred ecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCC
Confidence 88999999999999887 58999999999999999999999998875 7889999994 579999999999999999999
Q ss_pred cEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEE
Q 010871 306 RIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLL 384 (498)
Q Consensus 306 ~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~ 384 (498)
+.+..+ .|...|.+++|+|++++|++|+.||.|++||++......... ...+...|.++.|+ |++++|+
T Consensus 217 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~s-----~~g~~l~ 286 (340)
T 1got_B 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-----HDNIICGITSVSFS-----KSGRLLL 286 (340)
T ss_dssp SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CTTCCSCEEEEEEC-----TTSSEEE
T ss_pred eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-----cCCcccceEEEEEC-----CCCCEEE
Confidence 998888 488899999999999999999999999999997543222111 12334467777666 9999999
Q ss_pred EEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEE
Q 010871 385 TCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYD 449 (498)
Q Consensus 385 t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd 449 (498)
+|+.|+.|++||+..... ......+...+.. +.|+| +|.+|++|+.||.|+|||
T Consensus 287 ~g~~d~~i~vwd~~~~~~----~~~~~~h~~~v~~--~~~s~-----dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 287 AGYDDFNCNVWDALKADR----AGVLAGHDNRVSC--LGVTD-----DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSEEEEEETTTCCE----EEEEECCSSCEEE--EEECT-----TSSCEEEEETTSCEEEEC
T ss_pred EECCCCeEEEEEcccCcE----eeEeecCCCcEEE--EEEcC-----CCCEEEEEcCCccEEecC
Confidence 999999999999875421 1111222333322 25554 999999999999999996
No 60
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-33 Score=280.41 Aligned_cols=274 Identities=19% Similarity=0.338 Sum_probs=222.4
Q ss_pred ecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG 263 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 263 (498)
.+|...|+|++| ++++|++|+.||.|++||+.+ ++....+.+|.+.|.+++| ++++|++|+.||+|++||+.++
T Consensus 130 ~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 130 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred cCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCC-CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 467788999987 679999999999999999988 7888999999999999999 7889999999999999999999
Q ss_pred cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEE---EEe-ecCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 264 DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRII---KKL-VVDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 264 ~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~---~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
+.+..+.+|. .+.++.|++ .++++|+.||.|++||+.+++.. ..+ .|...|.++++ +++++++|+.||.|
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i 278 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTI 278 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred cEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence 9999998875 677888864 58999999999999999987754 333 57889999999 77899999999999
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCcee
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVH 418 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
++||++...... ....|...|.++.+. +.++++|+.||.|++||++++.. ......+...+.
T Consensus 279 ~vwd~~~~~~~~-------~~~~~~~~v~~~~~~-------~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~ 340 (435)
T 1p22_A 279 KVWNTSTCEFVR-------TLNGHKRGIACLQYR-------DRLVVSGSSDNTIRLWDIECGAC----LRVLEGHEELVR 340 (435)
T ss_dssp EEEETTTCCEEE-------EEECCSSCEEEEEEE-------TTEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEE
T ss_pred EEEECCcCcEEE-------EEcCCCCcEEEEEeC-------CCEEEEEeCCCeEEEEECCCCCE----EEEEeCCcCcEE
Confidence 999987543221 135677888888763 78999999999999999986421 111111222222
Q ss_pred eeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCc-------cceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 010871 419 SIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKH-------SCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIV 491 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~-------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~i 491 (498)
.+ .+ ++.+|++|+.||.|++||+.++.. .++..+.+|.+.|++++| ++.+|++|+.||.|++
T Consensus 341 ~~-------~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 341 CI-------RF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp EE-------EC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred EE-------Ee--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 22 12 789999999999999999975321 157788999999999999 6788999999999999
Q ss_pred eecCCC
Q 010871 492 WKRAKT 497 (498)
Q Consensus 492 W~~~~~ 497 (498)
||+.+.
T Consensus 410 wd~~~~ 415 (435)
T 1p22_A 410 WDFLND 415 (435)
T ss_dssp EC----
T ss_pred EECCCC
Confidence 998753
No 61
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.4e-34 Score=274.03 Aligned_cols=255 Identities=15% Similarity=0.179 Sum_probs=193.5
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC-ceeEEeecCCCCeEEEEEcc--CCCEEEEEeCCCcEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP-KVIKLLNGHSKDVTDFDFSS--NNQYIASSSMDKTVR 256 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~--~~~~l~s~s~dg~v~ 256 (498)
+..+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++. ..+..+.+|.+.|.+++|++ ++++|++|+.|++|+
T Consensus 6 ~~~~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp --------CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred eeecccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence 446789999999999999 99999999999999999998732 35678999999999999986 488999999999999
Q ss_pred EEECCCC--cEEEEEecCC-CeEEEEEEcCC-CcEEEEEeCCCcEEEEEcCCCcEEE---Ee-ecCCCeEEEEEcCC---
Q 010871 257 VWELTKG--DCIRVIYGVS-SQLCIRFHPVN-NNFLSVGNANKEITVFNFSTGRIIK---KL-VVDSEVTSMDHDHT--- 325 (498)
Q Consensus 257 iwd~~~~--~~~~~~~~~~-~v~~i~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~---~~-~~~~~i~~l~~~~~--- 325 (498)
+||++++ +.+..+.+|. .+.+++|+|++ +.+|++|+.|+.|++||++.+.... .+ .|...|.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999987 4566677664 78899999963 6789999999999999998764321 22 47778999999997
Q ss_pred --------------CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC----cEEEEEE
Q 010871 326 --------------GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG----PVLLTCT 387 (498)
Q Consensus 326 --------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~----~~l~t~s 387 (498)
+.+|++|+.|+.|++||++...... ....+.+|...|.++.|+ |++ .+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~----~~~~l~~h~~~V~~v~~s-----p~~~~~~~~las~s 235 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK----EEQKLEAHSDWVRDVAWA-----PSIGLPTSTIASCS 235 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE----EEECCBCCSSCEEEEECC-----CCSSCSCCEEEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccc----eeeecccCCCceEEEEec-----CCCCCCCceEEEEc
Confidence 4689999999999999985331100 112246788999999887 775 8999999
Q ss_pred cCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 388 QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 388 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
.|++|++|++...............+...+. .++|+| ++++|++|+.|+.|++|+..
T Consensus 236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~--~v~~sp-----~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVW--HVSWSI-----TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCEEEEEECSSTTCCCCBCCEEEECSSCEE--EEEECT-----TTCCEEEEESSSCEEEEEEC
T ss_pred CCCeEEEEEccCccccchhhhhhhcCCCcEE--EEEEcC-----CCCEEEEEcCCCeEEEEEEC
Confidence 9999999998753211111111112222222 335555 99999999999999999986
No 62
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.3e-32 Score=273.66 Aligned_cols=299 Identities=17% Similarity=0.267 Sum_probs=240.5
Q ss_pred eeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCC
Q 010871 154 SFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKD 233 (498)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~ 233 (498)
.+....++.+++|...... ....+.+|.+.|++++|+ +++|++|+.||.|++||+.+ ++....+.+|...
T Consensus 132 l~sg~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~ 201 (445)
T 2ovr_B 132 IVSGSDDNTLKVWSAVTGK------CLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAET-GECIHTLYGHTST 201 (445)
T ss_dssp EEEEETTSCEEEEETTTCC------EEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTT-TEEEEEECCCSSC
T ss_pred EEEEECCCcEEEEECCCCc------EEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCc-CcEEEEECCCCCc
Confidence 3444556667777654332 234578999999999997 46999999999999999998 7888999999999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee
Q 010871 234 VTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV 312 (498)
Q Consensus 234 V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 312 (498)
|.++.|+ +..|++|+.||+|++||+.+++.+..+.+|. .+.++.| ++.++++|+.||.|++||+++++.+..+.
T Consensus 202 v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 276 (445)
T 2ovr_B 202 VRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQ 276 (445)
T ss_dssp EEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEEC
T ss_pred EEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEec
Confidence 9999996 5689999999999999999999999998875 6778888 45789999999999999999999998884
Q ss_pred -cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCc
Q 010871 313 -VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGN 391 (498)
Q Consensus 313 -~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~ 391 (498)
|...|.+++| ++.++++|+.||.|++||++...... ....|...+.++.+ ++++|++++.||.
T Consensus 277 ~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~-------~~~~~~~~v~~~~~-------~~~~l~~~~~dg~ 340 (445)
T 2ovr_B 277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH-------TLTGHQSLTSGMEL-------KDNILVSGNADST 340 (445)
T ss_dssp CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE-------EECCCCSCEEEEEE-------ETTEEEEEETTSC
T ss_pred CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE-------EEcCCcccEEEEEE-------eCCEEEEEeCCCe
Confidence 7889999999 78899999999999999997643221 13567777777664 4789999999999
Q ss_pred EEEEEccccccceeeEeEee--ccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeee-----cCC
Q 010871 392 LSFFSVALEIQGYLTFRCSL--KLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL-----QGH 464 (498)
Q Consensus 392 i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~-----~~h 464 (498)
|++||+..+.. ...... .+...+..+ .| ++++|++|+.||.|++||+.+++ .+..+ .+|
T Consensus 341 i~vwd~~~~~~---~~~~~~~~~~~~~v~~~--~~-------~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~ 406 (445)
T 2ovr_B 341 VKIWDIKTGQC---LQTLQGPNKHQSAVTCL--QF-------NKNFVITSSDDGTVKLWDLKTGE--FIRNLVTLESGGS 406 (445)
T ss_dssp EEEEETTTCCE---EEEECSTTSCSSCEEEE--EE-------CSSEEEEEETTSEEEEEETTTCC--EEEEEEECTTGGG
T ss_pred EEEEECCCCcE---EEEEccCCCCCCCEEEE--EE-------CCCEEEEEeCCCeEEEEECCCCc--eeeeeeccccCCC
Confidence 99999975421 111111 122222222 22 57899999999999999999865 45555 478
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCe----EEEeecCCC
Q 010871 465 RFPVVAVAWNHGENLLASSDLYGI----VIVWKRAKT 497 (498)
Q Consensus 465 ~~~V~~l~~sp~~~~l~s~~~Dg~----i~iW~~~~~ 497 (498)
.+.|++++|+|++.+|++|+.||+ |.|||++..
T Consensus 407 ~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 407 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 899999999999999999999998 999999753
No 63
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=268.01 Aligned_cols=287 Identities=16% Similarity=0.246 Sum_probs=211.1
Q ss_pred eeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC-ceeEEeecCC
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP-KVIKLLNGHS 231 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~-~~~~~~~~h~ 231 (498)
.......++.+++|...... .........+|.+.|++++|+| ++++||+|+.|++|+||++.... .....+.+|.
T Consensus 30 ~las~~~D~~i~iw~~~~~~---~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~ 105 (345)
T 3fm0_A 30 LLASCGGDRRIRIWGTEGDS---WICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHE 105 (345)
T ss_dssp CEEEEETTSCEEEEEEETTE---EEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS
T ss_pred EEEEEcCCCeEEEEEcCCCc---ceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC
Confidence 34445556666666543221 1111224578999999999999 99999999999999999998632 4577899999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc---EEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE
Q 010871 232 KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD---CIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI 307 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 307 (498)
..|.+++|+|++++|++|+.|++|++||+.++. ++..+..|. .+.+++|+|+ +.+|++|+.|+.|++||.++++.
T Consensus 106 ~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~ 184 (345)
T 3fm0_A 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDW 184 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEE
T ss_pred CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCE
Confidence 999999999999999999999999999998763 455666664 6889999995 57899999999999999988764
Q ss_pred E--EEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccc---------cccccCCCccceeeEEEeEee
Q 010871 308 I--KKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSH---------RHRTTGKRKCPVTTVQYRSFS 375 (498)
Q Consensus 308 ~--~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~ 375 (498)
. ..+ .|...|.+++|+|++++|++|+.||.|++|+............ .......|...|.++.|.
T Consensus 185 ~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--- 261 (345)
T 3fm0_A 185 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC--- 261 (345)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC---
T ss_pred EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe---
Confidence 3 444 5889999999999999999999999999999743321111000 000112367778887776
Q ss_pred EcCCCcEEEEEEcCCcEEEEEccccccce---eeEeEeeccCCceeeeEEEEeeeeeccCC-CEEEEEeCCCcEEEEECC
Q 010871 376 LLAGGPVLLTCTQDGNLSFFSVALEIQGY---LTFRCSLKLAPRVHSIRASFCPLLSLEKG-EYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 376 ~s~~~~~l~t~s~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~dg~I~iwd~~ 451 (498)
+++..|++++.|+.|++|+........ .................+.|+| ++ .+||+|+.||.|++|++.
T Consensus 262 --~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p-----~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 262 --QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP-----KEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp --TTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS-----SSTTEEEEEETTSCEEEEEEC
T ss_pred --cCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC-----CCceEEEEcCCCCcEEEEEec
Confidence 999999999999999999987542211 1111111111111222336666 76 599999999999999998
Q ss_pred CCC
Q 010871 452 KPK 454 (498)
Q Consensus 452 ~~~ 454 (498)
+.+
T Consensus 335 ~~~ 337 (345)
T 3fm0_A 335 RPE 337 (345)
T ss_dssp C--
T ss_pred CCC
Confidence 854
No 64
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-35 Score=293.28 Aligned_cols=314 Identities=14% Similarity=0.086 Sum_probs=216.7
Q ss_pred ecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecC-----CCCEEEEEeCCCcEEEEEcCCCCc---------
Q 010871 157 STASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHM-----SSDLLAYGASDGTLTVCTVSDPPK--------- 222 (498)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-----~~~~lasg~~dg~i~iwd~~~~~~--------- 222 (498)
...+..+++|.+...... . .....+.+|.+.|++|+|+|. ++.+||+|+.||+|+|||+.....
T Consensus 179 ~s~D~tI~iWd~~~~~~~-~-~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~ 256 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLH-C-VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE 256 (524)
T ss_dssp ---CEEEEEEEEETTTCC-E-EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC
T ss_pred CCCCceEEEEEccCCCCC-c-eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec
Confidence 334455566654332211 0 012346778999999999993 257999999999999999976321
Q ss_pred -eeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-EEEEEecCC-CeEEE--EEEcCCCcEEEEEeCCCcE
Q 010871 223 -VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD-CIRVIYGVS-SQLCI--RFHPVNNNFLSVGNANKEI 297 (498)
Q Consensus 223 -~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~-~v~~i--~~~~~~~~~l~~g~~dg~i 297 (498)
....+.+|...|++++|++++ .|++|+.||+|++||++++. ....+.+|. .|.++ .|.+++..+|++|+.|++|
T Consensus 257 ~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 257 KPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp SCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred CceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 234788999999999999864 89999999999999999764 445677774 67788 4555333899999999999
Q ss_pred EEEEcCCCcEEEEe-ecC--CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEe
Q 010871 298 TVFNFSTGRIIKKL-VVD--SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSF 374 (498)
Q Consensus 298 ~iwd~~~~~~~~~~-~~~--~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 374 (498)
+|||+++++++..+ .+. ..|.+++|+|+++.+++++.|+.|++||++...... .+.+|...|+++.|+
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~-------~l~gH~~~V~sva~S-- 406 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH-------PLVSRETTITAIGVS-- 406 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE-------EEEECSSCEEEEECC--
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce-------eeecCCCceEEEEeC--
Confidence 99999988766555 333 358899999999999999999999999987543211 135688899998886
Q ss_pred eEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC
Q 010871 375 SLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 375 ~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~ 454 (498)
|++++|++|+.||+|++||+....... .................|+ +++..+. ...+ +.+|+... .
T Consensus 407 ---p~g~~l~Sgs~Dgtv~lwd~~~~~~~~--~~~~~~~~~~~~v~~v~~s-----p~g~~~~-~~~~--~~~~~~~~-~ 472 (524)
T 2j04_B 407 ---RLHPMVLAGSADGSLIITNAARRLLHG--IKNSSATQKSLRLWKWDYS-----IKDDKYR-IDSS--YEVYPLTV-N 472 (524)
T ss_dssp ---SSCCBCEEEETTTEEECCBSCSSTTTC--C------CCCCEEEECBCC-----SSSCEEE-ECCC--CCCCC-----
T ss_pred ---CCCCeEEEEECCCEEEEEechHhhccc--cccCccceeeeEEEEeccC-----CCCCeEE-ccCC--ceeccccc-C
Confidence 999999999999999999986421100 0000000000111233444 4887552 2222 33333321 1
Q ss_pred ccceeeecCCCCCeEEEEEcCCCC---EEEEEeCCCeEEEeecCC
Q 010871 455 HSCVNKLQGHRFPVVAVAWNHGEN---LLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 455 ~~~~~~~~~h~~~V~~l~~sp~~~---~l~s~~~Dg~i~iW~~~~ 496 (498)
..++..+.+|...|.+|+|+|++. +||+|+.||.|+||++..
T Consensus 473 g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 473 DVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ---------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 335778899999999999999964 999999999999999875
No 65
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-32 Score=273.84 Aligned_cols=275 Identities=23% Similarity=0.389 Sum_probs=226.8
Q ss_pred eeeecccccE-EEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 181 CIFDQCKAAV-TILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 181 ~~~~~h~~~V-~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
..+.+|.+.| +|+.+ ++++|++|+.||.|++||+.+ ++....+.+|.+.|.+++|+ +.+|++|+.||+|++||
T Consensus 112 ~~l~~h~~~v~~~~~~---~g~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEEECSTTSCEEEEEE---ETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred EEecccCCCcEEEEEE---cCCEEEEEECCCcEEEEECCC-CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 4678999874 66555 578999999999999999998 78889999999999999997 56999999999999999
Q ss_pred CCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCe
Q 010871 260 LTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGC 337 (498)
Q Consensus 260 ~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~ 337 (498)
+.+++.+..+.+|. .+.++.|.+ ..+++|+.||.|++||+.+++.+..+ .|...|.++++ ++.++++|+.||.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred CCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence 99999999998875 677888863 57999999999999999999998888 57889999999 6789999999999
Q ss_pred EEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCce
Q 010871 338 IYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRV 417 (498)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 417 (498)
|++||++..... .....|...|.++.+ ++.++++++.||.|++||+.++... .....+...+
T Consensus 261 i~iwd~~~~~~~-------~~~~~~~~~v~~~~~-------~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~v 322 (445)
T 2ovr_B 261 VKVWDPETETCL-------HTLQGHTNRVYSLQF-------DGIHVVSGSLDTSIRVWDVETGNCI----HTLTGHQSLT 322 (445)
T ss_dssp EEEEEGGGTEEE-------EEECCCSSCEEEEEE-------CSSEEEEEETTSCEEEEETTTCCEE----EEECCCCSCE
T ss_pred EEEEECCCCcEe-------EEecCCCCceEEEEE-------CCCEEEEEeCCCeEEEEECCCCCEE----EEEcCCcccE
Confidence 999998754322 123567788888876 5899999999999999999865221 1111111111
Q ss_pred eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC---CCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 418 HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG---HRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
. .+.+ ++++|++|+.||.|++||+.+++ ++..+.+ |...|++++|+ +.+|++|+.||.|++|++
T Consensus 323 ~----~~~~-----~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 323 S----GMEL-----KDNILVSGNADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp E----EEEE-----ETTEEEEEETTSCEEEEETTTCC--EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred E----EEEE-----eCCEEEEEeCCCeEEEEECCCCc--EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 1 2222 68899999999999999998854 5677765 88999999996 579999999999999999
Q ss_pred CCC
Q 010871 495 AKT 497 (498)
Q Consensus 495 ~~~ 497 (498)
.++
T Consensus 390 ~~~ 392 (445)
T 2ovr_B 390 KTG 392 (445)
T ss_dssp TTC
T ss_pred CCC
Confidence 865
No 66
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-33 Score=273.98 Aligned_cols=254 Identities=18% Similarity=0.287 Sum_probs=205.2
Q ss_pred ccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcE
Q 010871 186 CKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDC 265 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 265 (498)
+...|++++|+| ++++||+|+.||.|+|||+.+ .+....+.+|...|.+++|+|++++|++++.|++|++||+.++++
T Consensus 122 ~~~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 122 SDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp CCCBEEEEEECT-TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CceeEEEEEECC-CCCEEEEEcCCCeEEEEECCC-CcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence 344699999999 999999999999999999988 788889999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe--------ecCCCeEEEEEcCCCCEEEEEcCCCe
Q 010871 266 IRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL--------VVDSEVTSMDHDHTGQLLFCGDAQGC 337 (498)
Q Consensus 266 ~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--------~~~~~i~~l~~~~~~~~l~~~~~dg~ 337 (498)
...+..+..+.+++|+|.++.+|++|+.|+.|++||+++++.+..+ .|...|.+++|+|++++|++|+.||.
T Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 200 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 9999888899999999977789999999999999999999887766 36788999999999999999999999
Q ss_pred EEEEEccCCcccccc-----cccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeec
Q 010871 338 IYSISMESHSGALSR-----SHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLK 412 (498)
Q Consensus 338 i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 412 (498)
|++||++........ ........+|...|.++.+. +++.+|++++.|+.|++||+..+.. ......
T Consensus 280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~sgs~D~~v~iwd~~~~~~----~~~l~~ 350 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGNP----LLMLQG 350 (393)
T ss_dssp EEEEEC---------------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCCE----EEEEEC
T ss_pred EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEEC-----CCCCEEEEEeCCCeEEEEECCCCeE----EEEECC
Confidence 999998754321110 00111235677888888776 8999999999999999999986532 111122
Q ss_pred cCCceeeeEEEEeee-eeccCCCEEEEEeCCCcEEEEECCC
Q 010871 413 LAPRVHSIRASFCPL-LSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 413 ~~~~~~~~~~~~~~~-~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
+...+..+ .|++- .+.+++.+|++|+.||+|+||++..
T Consensus 351 h~~~v~~v--~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 351 HRNSVISV--AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CSSCEEEE--EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCCCEEEE--EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 33333333 44331 1234789999999999999999864
No 67
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=273.43 Aligned_cols=267 Identities=18% Similarity=0.194 Sum_probs=203.4
Q ss_pred eeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC-CceeEEeecCCCCeEEEEEccC--CCEEEEEeCCCcEE
Q 010871 180 HCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP-PKVIKLLNGHSKDVTDFDFSSN--NQYIASSSMDKTVR 256 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~s~dg~v~ 256 (498)
..++.+|.+.|++++|+| ++++||+|+.||.|+||++... ......+.+|...|.+++|+++ +++|++++.||.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp -CCEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456899999999999999 9999999999999999999731 5667788999999999999977 89999999999999
Q ss_pred EEECCCCc--EEEEEecC-CCeEEEEEEcCC-CcEEEEEeCCCcEEEEEcCCCcEE---EEeecCCCeEEEEEcCCCCEE
Q 010871 257 VWELTKGD--CIRVIYGV-SSQLCIRFHPVN-NNFLSVGNANKEITVFNFSTGRII---KKLVVDSEVTSMDHDHTGQLL 329 (498)
Q Consensus 257 iwd~~~~~--~~~~~~~~-~~v~~i~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~---~~~~~~~~i~~l~~~~~~~~l 329 (498)
+||+.+++ .+..+..| ..+.+++|+|+. +.+|++++.|+.|++||+.++... ....+...|.+++|+|.....
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999987 66666655 578899999963 679999999999999999887322 222577889999998853211
Q ss_pred EEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeE
Q 010871 330 FCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRC 409 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 409 (498)
.... ...+++.+|++++.||.|++||++...........
T Consensus 163 ~~~~-----------------------------------------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 201 (379)
T 3jrp_A 163 DGEH-----------------------------------------NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 201 (379)
T ss_dssp ------------------------------------------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred cccc-----------------------------------------cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE
Confidence 0000 00156777777777777777777654322111111
Q ss_pred eeccCCceeeeEEEEeeeeeccC---CCEEEEEeCCCcEEEEECCCCCcc---ceeeecCCCCCeEEEEEcCCCCEEEEE
Q 010871 410 SLKLAPRVHSIRASFCPLLSLEK---GEYIVAGSEDSNVYFYDLAKPKHS---CVNKLQGHRFPVVAVAWNHGENLLASS 483 (498)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~gs~dg~I~iwd~~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~ 483 (498)
...+...+. .+.|+| + +.+|++++.||.|++||+.++... .+.....|...|++++|+|++++|+++
T Consensus 202 ~~~h~~~v~--~~~~sp-----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 202 LEGHSDWVR--DVAWSP-----TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274 (379)
T ss_dssp ECCCSSCEE--EEEECC-----CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred EecccCcEe--EEEECC-----CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence 111222222 235665 8 899999999999999999986422 223334588999999999999999999
Q ss_pred eCCCeEEEeecC
Q 010871 484 DLYGIVIVWKRA 495 (498)
Q Consensus 484 ~~Dg~i~iW~~~ 495 (498)
+.||.|++|++.
T Consensus 275 ~~dg~i~iw~~~ 286 (379)
T 3jrp_A 275 GGDNKVTLWKEN 286 (379)
T ss_dssp ESSSSEEEEEEE
T ss_pred cCCCcEEEEeCC
Confidence 999999999986
No 68
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=302.19 Aligned_cols=307 Identities=12% Similarity=0.120 Sum_probs=215.0
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD 264 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 264 (498)
.|...|++|+|+| +++|++++.|++|+|||+.+ ++.+..+. |...|++++|+|++++|++|+.||+|++||+.+++
T Consensus 56 ~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~-~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~ 131 (902)
T 2oaj_A 56 EDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYS-QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ 131 (902)
T ss_dssp SSCCCEEEEEEET--TTEEEEEETTCEEEEEETTT-CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE
T ss_pred CCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCC-CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 4788999999999 56999999999999999998 67777776 77899999999999999999999999999999887
Q ss_pred EEE-E----------EecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec-------------------
Q 010871 265 CIR-V----------IYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV------------------- 313 (498)
Q Consensus 265 ~~~-~----------~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~------------------- 313 (498)
+.. . +.+| ..|.+++|+|++...+++|+.||.| +||+++++.+..+..
T Consensus 132 ~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 132 LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccccccc
Confidence 641 1 1233 4788999999777899999999999 999999998887753
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccccccc----ccc-----c--CCCccceeeEEEeEeeEcCCC-c
Q 010871 314 DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHR----HRT-----T--GKRKCPVTTVQYRSFSLLAGG-P 381 (498)
Q Consensus 314 ~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~-----~--~~~~~~i~~~~~~~~~~s~~~-~ 381 (498)
...|.+++|+|+|.+|++|+.||.|++||++.......+... ... . ..+..+|.++.|.+- .+|++ .
T Consensus 211 ~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~-~~pd~~~ 289 (902)
T 2oaj_A 211 TPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCE-NNPEYTS 289 (902)
T ss_dssp CCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEEC-SSTTEEE
T ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEec-CCCCCCE
Confidence 367999999999999999999999999999764322111110 000 0 013445666666310 01222 2
Q ss_pred EEEEE---------------------------------------------------------------------------
Q 010871 382 VLLTC--------------------------------------------------------------------------- 386 (498)
Q Consensus 382 ~l~t~--------------------------------------------------------------------------- 386 (498)
+|++|
T Consensus 290 ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~ 369 (902)
T 2oaj_A 290 LLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL 369 (902)
T ss_dssp EEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE
T ss_pred EEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE
Confidence 33344
Q ss_pred -EcCCcEEEEEccccccceeeE--eE-eeccCCceeeeEE---------------------------EEeeeeeccCCCE
Q 010871 387 -TQDGNLSFFSVALEIQGYLTF--RC-SLKLAPRVHSIRA---------------------------SFCPLLSLEKGEY 435 (498)
Q Consensus 387 -s~dg~i~iwd~~~~~~~~~~~--~~-~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~ 435 (498)
+.||.|++||+..+....... .. ...+...+..+.. ....+.+++++++
T Consensus 370 ~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~ 449 (902)
T 2oaj_A 370 ILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTA 449 (902)
T ss_dssp EETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEE
T ss_pred EcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcE
Confidence 444444444442210000000 00 0000011111110 0112344569999
Q ss_pred EEEEeCCCcEEEEECCCCCccceeee----c-----CCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 436 IVAGSEDSNVYFYDLAKPKHSCVNKL----Q-----GHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 436 l~~gs~dg~I~iwd~~~~~~~~~~~~----~-----~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
|++|+.|++|++||+.++.......+ . +|...|++|+|+|++++||+|+.||+|+||++.++
T Consensus 450 laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 450 FITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp EEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred EEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 99999999999999988642211111 1 89999999999999999999999999999998754
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.5e-32 Score=271.91 Aligned_cols=300 Identities=18% Similarity=0.243 Sum_probs=234.3
Q ss_pred eeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCC
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSK 232 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~ 232 (498)
..+....++.+++|...... ....+.+|.+.|++++|+| ++ +|++|+.||+|++||+.+ ++....+.+|..
T Consensus 134 ~l~sgs~dg~i~vwd~~~~~------~~~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~-~~~~~~~~~h~~ 204 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSINKK------FLLQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKK-GCCTHVFEGHNS 204 (464)
T ss_dssp EEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTT-TEEEEEECCCSS
T ss_pred EEEEEcCCCcEEEEECCCCc------EEEEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCC-CcEEEEECCCCC
Confidence 34445556677777654332 2345679999999999998 55 999999999999999998 788899999999
Q ss_pred CeEEEEEc--cCCCEEEEEeCCCcEEEEECCCCcE-----------------------EEEEecCC-CeEEEEEEcCCCc
Q 010871 233 DVTDFDFS--SNNQYIASSSMDKTVRVWELTKGDC-----------------------IRVIYGVS-SQLCIRFHPVNNN 286 (498)
Q Consensus 233 ~V~~l~~s--~~~~~l~s~s~dg~v~iwd~~~~~~-----------------------~~~~~~~~-~v~~i~~~~~~~~ 286 (498)
.|.+++|+ +++.+|++|+.||+|++||+.++.. +..+.+|. .+.++ .+ ++.
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~~~ 281 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG-HGN 281 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE-ETT
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC-CCC
Confidence 99999998 4778999999999999999987753 44455554 45555 34 457
Q ss_pred EEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccc
Q 010871 287 FLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCP 365 (498)
Q Consensus 287 ~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 365 (498)
++++|+.||.|++||+.+++.+..+ .|...|.+++|+|+++++++|+.||.|++||++..... .....|...
T Consensus 282 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-------~~~~~h~~~ 354 (464)
T 3v7d_B 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM-------YTLQGHTAL 354 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE-------EEECCCSSC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-------EEEeCCCCc
Confidence 8999999999999999999999888 48899999999999999999999999999998754322 123678888
Q ss_pred eeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcE
Q 010871 366 VTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNV 445 (498)
Q Consensus 366 i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I 445 (498)
|.++.+. +.+|++++.||.|++||+..... ........... ...|++ ++.+|++|+ ||.|
T Consensus 355 v~~~~~~-------~~~l~s~s~dg~v~vwd~~~~~~-----~~~~~~~~~~~--~~~~~~-----~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 355 VGLLRLS-------DKFLVSAAADGSIRGWDANDYSR-----KFSYHHTNLSA--ITTFYV-----SDNILVSGS-ENQF 414 (464)
T ss_dssp EEEEEEC-------SSEEEEEETTSEEEEEETTTCCE-----EEEEECTTCCC--EEEEEE-----CSSEEEEEE-TTEE
T ss_pred EEEEEEc-------CCEEEEEeCCCcEEEEECCCCce-----eeeecCCCCcc--EEEEEe-----CCCEEEEec-CCeE
Confidence 9888864 68999999999999999986422 11111222222 235565 899999998 8999
Q ss_pred EEEECCCCCccceee-ecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 446 YFYDLAKPKHSCVNK-LQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 446 ~iwd~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
++||+.+++ .+.. +.+|...|.+++|+ ...++++++.||.+.+|-+
T Consensus 415 ~iwd~~~g~--~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 415 NIYNLRSGK--LVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEETTTCC--EEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEEECCCCc--EEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 999999965 4543 67789999999998 4456666677877766543
No 70
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-33 Score=271.64 Aligned_cols=247 Identities=15% Similarity=0.213 Sum_probs=195.1
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc---eeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK---VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
...+|.+.|++++|+| ++. +++++.||+|+|||+.++.. ......+|...|.+++|+|++++|++|+.||+|++|
T Consensus 89 ~~~~~~~~V~~~~~s~-d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVS-EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp EEEECSSCEEEEEEET-TTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred ccCCCCCCEEEEEEcC-CCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 4567899999999999 654 55678899999999987322 123455899999999999999999999999999999
Q ss_pred ECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee---cCCCeEEEEEcCCC-CEEEEEc
Q 010871 259 ELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV---VDSEVTSMDHDHTG-QLLFCGD 333 (498)
Q Consensus 259 d~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~i~~l~~~~~~-~~l~~~~ 333 (498)
|+.+++++..+..|. .+.+++|++++..++++++.||.|++||+++++.+..+. +...+.+++|+|++ .+|++|+
T Consensus 167 d~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 167 DLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee
Confidence 999999999999875 788999999888899999999999999999988776653 56779999999975 6889999
Q ss_pred CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC-cEEEEEEcCCcEEEEEccccccceeeEeEeec
Q 010871 334 AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG-PVLLTCTQDGNLSFFSVALEIQGYLTFRCSLK 412 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~-~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 412 (498)
.|+.|++||++..... ..+..|...|.++.|+ |++ ++|++++.|++|+|||++++.. .....
T Consensus 247 ~d~~i~~wd~~~~~~~-------~~~~~~~~~v~~l~~s-----p~~~~~lasgs~D~~i~iwd~~~~~~-----~~~~~ 309 (357)
T 4g56_B 247 ETGNVSLVNIKNPDSA-------QTSAVHSQNITGLAYS-----YHSSPFLASISEDCTVAVLDADFSEV-----FRDLS 309 (357)
T ss_dssp SSSCEEEEESSCGGGC-------EEECCCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTSCEE-----EEECC
T ss_pred cccceeEEECCCCcEe-------EEEeccceeEEEEEEc-----CCCCCEEEEEeCCCEEEEEECCCCcE-----eEECC
Confidence 9999999998754322 1236788889988886 776 6799999999999999986421 11222
Q ss_pred cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCC
Q 010871 413 LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
+...+.. ++|+| .++.+|++|+.||+|++|++.+.
T Consensus 310 H~~~V~~--vafsP----~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 310 HRDFVTG--VAWSP----LDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CSSCEEE--EEECS----SSTTEEEEEETTSCEEEEECC--
T ss_pred CCCCEEE--EEEeC----CCCCEEEEEcCCCeEEEEECCCC
Confidence 3333333 35665 37999999999999999999763
No 71
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-32 Score=260.51 Aligned_cols=252 Identities=21% Similarity=0.381 Sum_probs=206.2
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEE
Q 010871 221 PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITV 299 (498)
Q Consensus 221 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~i 299 (498)
......+.+|...|.+++|+|++++|++++.||.|++|++.+++....+.+|. .+.+++|+|+ +.+|++|+.|+.|++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKI 91 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC-CCEEEEECCCCEEEE
Confidence 45667788999999999999999999999999999999999999999998775 7889999995 579999999999999
Q ss_pred EEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC
Q 010871 300 FNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA 378 (498)
Q Consensus 300 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~ 378 (498)
||+.+++.+..+. |...|.+++|+|++++|++|+.||.|++||++..... .....|..+|.++.|. +
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~~~~~~v~~~~~~-----~ 159 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFN-----R 159 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE-------EEECCCSSCEEEEEEC-----T
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEE-------EEecCCCCcEEEEEEc-----C
Confidence 9999999988884 7889999999999999999999999999998754322 1235677888888876 9
Q ss_pred CCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccce
Q 010871 379 GGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCV 458 (498)
Q Consensus 379 ~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~ 458 (498)
++.+|++++.||.|++||++.... ...........+ ....|+| ++++|++++.||.|++||+.++ .++
T Consensus 160 ~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~--~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~--~~~ 227 (312)
T 4ery_A 160 DGSLIVSSSYDGLCRIWDTASGQC---LKTLIDDDNPPV--SFVKFSP-----NGKYILAATLDNTLKLWDYSKG--KCL 227 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCE---EEEECCSSCCCE--EEEEECT-----TSSEEEEEETTTEEEEEETTTT--EEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCce---eeEEeccCCCce--EEEEECC-----CCCEEEEEcCCCeEEEEECCCC--cEE
Confidence 999999999999999999985421 111111111112 2234554 9999999999999999999984 467
Q ss_pred eeecCCCCCeEE--EEE-cCCCCEEEEEeCCCeEEEeecCCC
Q 010871 459 NKLQGHRFPVVA--VAW-NHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 459 ~~~~~h~~~V~~--l~~-sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
..+.+|...+.+ ..+ .+++.+|++|+.||.|++||+.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 788888765433 233 467899999999999999999864
No 72
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.2e-33 Score=285.86 Aligned_cols=293 Identities=12% Similarity=0.189 Sum_probs=226.5
Q ss_pred eeeecccc---cEEEEEEecCC-CCEEEEEeCCCcEEEEEcCCCCceeEEe-e---cCCCCeEEEEEccCCCEEEEEeCC
Q 010871 181 CIFDQCKA---AVTILKFGHMS-SDLLAYGASDGTLTVCTVSDPPKVIKLL-N---GHSKDVTDFDFSSNNQYIASSSMD 252 (498)
Q Consensus 181 ~~~~~h~~---~V~~v~~sp~~-~~~lasg~~dg~i~iwd~~~~~~~~~~~-~---~h~~~V~~l~~s~~~~~l~s~s~d 252 (498)
..+.+|.+ .|++++|+| + +++|++|+.||.|++||+.+ ++.+..+ . +|...|.+++|+ ++++|++++.|
T Consensus 197 ~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 273 (615)
T 1pgu_A 197 ASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD 273 (615)
T ss_dssp EEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT
T ss_pred eeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC
Confidence 45778999 999999999 7 99999999999999999988 7777888 6 899999999999 99999999999
Q ss_pred CcEEEEECCCCcEEEEEecC-----CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcC--
Q 010871 253 KTVRVWELTKGDCIRVIYGV-----SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDH-- 324 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~-- 324 (498)
|.|++||+.+++.+..+..+ ..+.++.|. ++.++++++.+|.|++||+.+++.+..+ .|...|.+++| |
T Consensus 274 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l 350 (615)
T 1pgu_A 274 ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPL 350 (615)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTT
T ss_pred CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCc
Confidence 99999999999999999877 456677775 5678999999999999999988777666 34444444444 3
Q ss_pred -------------------------------CCCEEEEEcCCCeEEEEEccCCcc-------------------------
Q 010871 325 -------------------------------TGQLLFCGDAQGCIYSISMESHSG------------------------- 348 (498)
Q Consensus 325 -------------------------------~~~~l~~~~~dg~i~i~d~~~~~~------------------------- 348 (498)
++..|++++.||.|++|++.....
T Consensus 351 ~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 430 (615)
T 1pgu_A 351 ISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLL 430 (615)
T ss_dssp EEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEE
T ss_pred EEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceE
Confidence 355666666666666666542110
Q ss_pred -------cc-----------------------------ccc--c---cc--cccCCCccceeeEEEeEeeEcCCCcEEEE
Q 010871 349 -------AL-----------------------------SRS--H---RH--RTTGKRKCPVTTVQYRSFSLLAGGPVLLT 385 (498)
Q Consensus 349 -------~~-----------------------------~~~--~---~~--~~~~~~~~~i~~~~~~~~~~s~~~~~l~t 385 (498)
.. ... . .. .....|...|.++.|+ |++++|++
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~ 505 (615)
T 1pgu_A 431 ILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-----PSETYIAA 505 (615)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-----TTSSEEEE
T ss_pred EEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC-----CCCCEEEE
Confidence 00 000 0 00 2235567777777766 99999999
Q ss_pred EEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeecc----------CCCEEEEEeCCCcEEEEECCCCCc
Q 010871 386 CTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLE----------KGEYIVAGSEDSNVYFYDLAKPKH 455 (498)
Q Consensus 386 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~gs~dg~I~iwd~~~~~~ 455 (498)
++.||.|++||+..... .......+... ...+.+++ ++++|++|+.||.|++||+.++.
T Consensus 506 ~~~dg~i~iw~~~~~~~---~~~~~~~h~~~-------v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~- 574 (615)
T 1pgu_A 506 GDVMGKILLYDLQSREV---KTSRWAFRTSK-------INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM- 574 (615)
T ss_dssp EETTSCEEEEETTTTEE---EECCSCCCSSC-------EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-
T ss_pred cCCCCeEEEeeCCCCcc---eeEeecCCCCc-------eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc-
Confidence 99999999999985422 11100002222 23344446 89999999999999999999853
Q ss_pred cceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 456 SCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 456 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.++..+.+|...|++++|+|+++ |++++.||.|++|+++.
T Consensus 575 ~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 575 KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 46788999999999999999999 99999999999999975
No 73
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.5e-32 Score=284.36 Aligned_cols=299 Identities=14% Similarity=0.180 Sum_probs=227.2
Q ss_pred eeeeecccccEEEEEEecCCCC-EEEEEeCCCcEEEEEcCCCCceeEEeecCCC---CeEEEEEccC-CCEEEEEeCCCc
Q 010871 180 HCIFDQCKAAVTILKFGHMSSD-LLAYGASDGTLTVCTVSDPPKVIKLLNGHSK---DVTDFDFSSN-NQYIASSSMDKT 254 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~-~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~---~V~~l~~s~~-~~~l~s~s~dg~ 254 (498)
...+.+|.+.|++++|+| ++. +|++|+.||.|++||+.+ .+....+.+|.. .|.+++|+|+ +++|++++.||.
T Consensus 153 ~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 153 LGEVSGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 230 (615)
T ss_dssp EEECCSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred ceeeecCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCC-cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence 346788999999999999 665 899999999999999988 788889999999 9999999999 999999999999
Q ss_pred EEEEECCCCcEEEEE-e---cC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecC-----CCeEEEEEcC
Q 010871 255 VRVWELTKGDCIRVI-Y---GV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD-----SEVTSMDHDH 324 (498)
Q Consensus 255 v~iwd~~~~~~~~~~-~---~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-----~~i~~l~~~~ 324 (498)
|++||+.+++.+..+ . .| ..+.++.|+ ++.+|++++.|+.|++||+++++.+..+... ..+.++.|.
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 307 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT- 307 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-
Confidence 999999999999998 3 44 578899998 5688999999999999999999998888644 678888885
Q ss_pred CCCEEEEEcCCCeEEEEEccCCcccccccc-c--------------------------ccccCCCccceeeEEEeEeeEc
Q 010871 325 TGQLLFCGDAQGCIYSISMESHSGALSRSH-R--------------------------HRTTGKRKCPVTTVQYRSFSLL 377 (498)
Q Consensus 325 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~--------------------------~~~~~~~~~~i~~~~~~~~~~s 377 (498)
++.++++++.+|.|++||+........... . ... ..|...|.++.+
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~-~~~~~~v~~~~~------ 380 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMH-QDHSNLIVSLDN------ 380 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEE-CCCCSCEEEEEC------
T ss_pred CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhc-CcccCceEEEEE------
Confidence 889999999999999999865221111000 0 000 223344444443
Q ss_pred CCCcEEEEEEcCCcEEEEEcccccc-------------------------------ce----------------------
Q 010871 378 AGGPVLLTCTQDGNLSFFSVALEIQ-------------------------------GY---------------------- 404 (498)
Q Consensus 378 ~~~~~l~t~s~dg~i~iwd~~~~~~-------------------------------~~---------------------- 404 (498)
+++..|++++.|+.|++|++..... +.
T Consensus 381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 460 (615)
T 1pgu_A 381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVA 460 (615)
T ss_dssp CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEE
T ss_pred CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEE
Confidence 3345555566666666555543110 00
Q ss_pred ----------------eeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC-CCCC
Q 010871 405 ----------------LTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG-HRFP 467 (498)
Q Consensus 405 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~-h~~~ 467 (498)
..... .....+. .....+.+++++++|++|+.||.|++||+.++ ..+..+.+ |...
T Consensus 461 ~~~~~d~~i~~~~~~~~~~~~-~~~~~~~----~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~h~~~ 533 (615)
T 1pgu_A 461 VGLEEGNTIQVFKLSDLEVSF-DLKTPLR----AKPSYISISPSETYIAAGDVMGKILLYDLQSR--EVKTSRWAFRTSK 533 (615)
T ss_dssp EEETTTSCEEEEETTEEEEEE-ECSSCCS----SCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEECCSCCCSSC
T ss_pred EeecCCCeEEEEECCCccccc-cccCCcc----CceEEEEECCCCCEEEEcCCCCeEEEeeCCCC--cceeEeecCCCCc
Confidence 00000 1111111 12223444459999999999999999999984 46777887 9999
Q ss_pred eEEEEEcC----------CCCEEEEEeCCCeEEEeecCCC
Q 010871 468 VVAVAWNH----------GENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 468 V~~l~~sp----------~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
|++++|+| ++++|++++.||.|++|+++++
T Consensus 534 v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 534 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 99999999 9999999999999999999864
No 74
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-32 Score=263.81 Aligned_cols=280 Identities=13% Similarity=0.190 Sum_probs=207.3
Q ss_pred ceeeeeecCCCCCCCccCCCCCcce-eecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeec
Q 010871 151 HRTSFSSTASDSDQPRRQGPEPAYS-FVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNG 229 (498)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~ 229 (498)
....+....++.+++|......... .......+.+|...|++++|+| ++.+|++|+.|++|+|||+.+ ++....+.+
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~ 116 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRT-GTTYKRFVG 116 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTS-SCEEEEEEC
T ss_pred CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcC
Confidence 3445566667777777665432211 1123457899999999999999 999999999999999999998 788889999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEe---cC-CCeEEEEEEcCCC---------cEEEEEeCCCc
Q 010871 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIY---GV-SSQLCIRFHPVNN---------NFLSVGNANKE 296 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~-~~v~~i~~~~~~~---------~~l~~g~~dg~ 296 (498)
|...|.+++|+|++++|++++.|++|++||+... ...... .| ..+.+++|+|.+. .++++++.||.
T Consensus 117 h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 195 (343)
T 2xzm_R 117 HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195 (343)
T ss_dssp CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE
Confidence 9999999999999999999999999999999843 333333 33 4688999999652 68999999999
Q ss_pred EEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEee
Q 010871 297 ITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFS 375 (498)
Q Consensus 297 i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 375 (498)
|++||. ..+....+ .|...|.+++|+|++++|++|+.||.|++||+......... ..+...|.++.|+
T Consensus 196 i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~-------~~~~~~v~~v~~s--- 264 (343)
T 2xzm_R 196 LKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE-------FDAGSTINQIAFN--- 264 (343)
T ss_dssp EEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE-------EECSSCEEEEEEC---
T ss_pred EEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee-------ecCCCcEEEEEEC---
Confidence 999995 45555555 58899999999999999999999999999998533221111 1233457777665
Q ss_pred EcCCCcEEEEEEcCCcEEEEEcccccccee-eEeEee-----cc-CCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEE
Q 010871 376 LLAGGPVLLTCTQDGNLSFFSVALEIQGYL-TFRCSL-----KL-APRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFY 448 (498)
Q Consensus 376 ~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~-~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iw 448 (498)
|++.+++ ++.|+.|++|++.+...... .+.... .. ........++|+| +|++|++|+.||.|++|
T Consensus 265 --p~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 265 --PKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA-----LGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp --SSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS-----SSCCEEEEETTSEEEEE
T ss_pred --CCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC-----CCCeEEEecCCceEEEE
Confidence 8888776 55688899999976432110 000000 00 0111122335555 99999999999999999
Q ss_pred ECCC
Q 010871 449 DLAK 452 (498)
Q Consensus 449 d~~~ 452 (498)
++.+
T Consensus 337 ~~~~ 340 (343)
T 2xzm_R 337 SFET 340 (343)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9875
No 75
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-32 Score=264.60 Aligned_cols=271 Identities=17% Similarity=0.241 Sum_probs=215.3
Q ss_pred ceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC-----CceeE
Q 010871 151 HRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP-----PKVIK 225 (498)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~-----~~~~~ 225 (498)
....+....+..+++|....... ...+..|...|.+++|+| ++.+||+|+.|+.+++|++... .....
T Consensus 76 ~~~l~s~s~Dg~v~vWd~~~~~~------~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~ 148 (354)
T 2pbi_B 76 KRRIVSSSQDGKVIVWDSFTTNK------EHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNENMAAKKK 148 (354)
T ss_dssp SSEEEEEETTSEEEEEETTTCCE------EEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECCCCTTCCSGGGCE
T ss_pred CCEEEEEeCCCeEEEEECCCCCc------ceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEeccccccccccce
Confidence 34556666777777776543322 234567888999999999 9999999999999999998642 23566
Q ss_pred EeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcC-CCcEEEEEeCCCcEEEEEcC
Q 010871 226 LLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPV-NNNFLSVGNANKEITVFNFS 303 (498)
Q Consensus 226 ~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~-~~~~l~~g~~dg~i~iwd~~ 303 (498)
.+.+|...|.+++|+|++..|++++.|++|++||+++++++..+.+|. .+.++.|+|. ++.+|++|+.||.|++||++
T Consensus 149 ~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~ 228 (354)
T 2pbi_B 149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228 (354)
T ss_dssp EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 788999999999999999999999999999999999999999999885 6789999885 35799999999999999999
Q ss_pred CCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcE
Q 010871 304 TGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPV 382 (498)
Q Consensus 304 ~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~ 382 (498)
+++++..+ .|...|.+++|+|++.+|++|+.|+.|++||++......... ...+...+.++.|+ |++.+
T Consensus 229 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~-----~~~~~~~~~~~~~s-----~~g~~ 298 (354)
T 2pbi_B 229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS-----KESIIFGASSVDFS-----LSGRL 298 (354)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CTTCCSCEEEEEEC-----TTSSE
T ss_pred CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-----CCCcccceeEEEEe-----CCCCE
Confidence 99998888 488999999999999999999999999999997543221111 12233456666655 99999
Q ss_pred EEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEE
Q 010871 383 LLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYD 449 (498)
Q Consensus 383 l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd 449 (498)
|++++.|+.|++||+..+.. ......+...+. .+.|+| +|++|++|+.||.|++|+
T Consensus 299 l~~g~~d~~i~vwd~~~~~~----~~~l~~h~~~v~--~l~~sp-----dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 299 LFAGYNDYTINVWDVLKGSR----VSILFGHENRVS--TLRVSP-----DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEETTSCEEEEETTTCSE----EEEECCCSSCEE--EEEECT-----TSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCcEEEEECCCCce----EEEEECCCCcEE--EEEECC-----CCCEEEEEcCCCCEEecC
Confidence 99999999999999975421 111112223222 235555 999999999999999996
No 76
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-32 Score=260.69 Aligned_cols=281 Identities=17% Similarity=0.265 Sum_probs=197.8
Q ss_pred eeeecCCCCCCCccCCCCCcceeecceeee-ec-ccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC------CceeE
Q 010871 154 SFSSTASDSDQPRRQGPEPAYSFVGMHCIF-DQ-CKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP------PKVIK 225 (498)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~------~~~~~ 225 (498)
......+..+++|...... +.. ...+ .+ |.+.|++++|+| ++.+||+|+.|++|+||++... .....
T Consensus 27 las~~~D~~i~lw~~~~~~-~~~---~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~ 101 (330)
T 2hes_X 27 LATGSTDRKIKLVSVKYDD-FTL---IDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLA 101 (330)
T ss_dssp EEEEESSSCEEEEECSSSC-CEE---EEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEE
T ss_pred EEEEcCCCEEEEEEecCCC-eEE---EEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEE
Confidence 3444556666666554321 111 1223 34 999999999999 8999999999999999998531 34567
Q ss_pred EeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC----CcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEE
Q 010871 226 LLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK----GDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVF 300 (498)
Q Consensus 226 ~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~----~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iw 300 (498)
.+.+|...|.+++|+|++++|++|+.|++|++||+.. .+++..+.+|. .+.+++|+|+ +.+|++|+.|++|++|
T Consensus 102 ~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW 180 (330)
T 2hes_X 102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIW 180 (330)
T ss_dssp EEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEE
T ss_pred EEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEE
Confidence 8899999999999999999999999999999999943 25677787774 7889999995 5799999999999999
Q ss_pred EcCCC--cEEEEe-ecCCCeEEEEEcCC--CCEEEEEcCCCeEEEEEccCCccccccc-cccccc-CCCccceeeEEEeE
Q 010871 301 NFSTG--RIIKKL-VVDSEVTSMDHDHT--GQLLFCGDAQGCIYSISMESHSGALSRS-HRHRTT-GKRKCPVTTVQYRS 373 (498)
Q Consensus 301 d~~~~--~~~~~~-~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~ 373 (498)
|..++ +++..+ .|...|.+++|+|+ +..|++|+.|+.|++|++.......... ...... ..|...|.++.|.
T Consensus 181 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s- 259 (330)
T 2hes_X 181 KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG- 259 (330)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC-
T ss_pred ECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc-
Confidence 99876 566666 58899999999998 6789999999999999986532111000 001111 2378889988885
Q ss_pred eeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCC-ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 374 FSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAP-RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 374 ~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
++ .+|++++.||.|++|+...+.... .......+.. .+. .+.|+|. .++++|++|+.||.|+|||+..
T Consensus 260 ----~~-~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~h~~~~v~--~v~~~~~---~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 260 ----FN-GLIASVGADGVLAVYEEVDGEWKV-FAKRALCHGVYEIN--VVKWLEL---NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ----TT-SCEEEEETTSCEEEEEEETTEEEE-EEEESCTTTTSCEE--EEEEC--------CCEEEEETTSEEEEEEC--
T ss_pred ----CC-CEEEEEeCCCEEEEEEcCCCceEE-EeccccccccceEE--EEEEecC---CCceEEEEecCCCcEEEEEecc
Confidence 44 489999999999999987432100 0011111111 222 2345541 1588999999999999999865
No 77
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.3e-33 Score=264.71 Aligned_cols=259 Identities=16% Similarity=0.205 Sum_probs=191.8
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--EEEEEecCC-CeEEEEEEcC-CCcEEEEEeCCCcEEEE
Q 010871 225 KLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD--CIRVIYGVS-SQLCIRFHPV-NNNFLSVGNANKEITVF 300 (498)
Q Consensus 225 ~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~-~v~~i~~~~~-~~~~l~~g~~dg~i~iw 300 (498)
..+.+|.+.|.+++|+|+|++|++|+.|++|+|||+.++. .+..+.+|. .|.+++|++. ++.+|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3467899999999999999999999999999999998875 467788875 7889999763 46899999999999999
Q ss_pred EcCCCc--EEEEe-ecCCCeEEEEEcCC--CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEee
Q 010871 301 NFSTGR--IIKKL-VVDSEVTSMDHDHT--GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFS 375 (498)
Q Consensus 301 d~~~~~--~~~~~-~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 375 (498)
|+++++ .+..+ .|...|.+++|+|+ +.+|++|+.||.|++|+++....... ......|...+.++.|.+-.
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~----~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV----KKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE----CCBTTSSSSCBCCCEECCCC
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce----eeeeccccCCcceEEEcccc
Confidence 999874 44455 58889999999998 78999999999999999875421100 11235677888888876210
Q ss_pred E------------cCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCC----CEEEEE
Q 010871 376 L------------LAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKG----EYIVAG 439 (498)
Q Consensus 376 ~------------s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~g 439 (498)
. ...+.+|++++.|+.|++||+....... .......+...+. .+.|+| ++ .+|++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~-~~~~l~~h~~~V~--~v~~sp-----~~~~~~~~las~ 234 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK-EEQKLEAHSDWVR--DVAWAP-----SIGLPTSTIASC 234 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE-EEECCBCCSSCEE--EEECCC-----CSSCSCCEEEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc-eeeecccCCCceE--EEEecC-----CCCCCCceEEEE
Confidence 0 0014789999999999999986431101 1111111222222 336665 65 899999
Q ss_pred eCCCcEEEEECCCCC--ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 440 SEDSNVYFYDLAKPK--HSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 440 s~dg~I~iwd~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+.|++|++|++.+.. ......+..|...|.+++|+|++++|++++.||.|+||+..
T Consensus 235 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 235 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999999997631 11233456789999999999999999999999999999975
No 78
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-33 Score=275.20 Aligned_cols=284 Identities=15% Similarity=0.225 Sum_probs=215.4
Q ss_pred ceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC------Ccee
Q 010871 151 HRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP------PKVI 224 (498)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~------~~~~ 224 (498)
....++...+..+++|...... ....+.+|...|.+++|+| ++++||+|+.|+.|+||++.+. ....
T Consensus 78 ~~~l~s~s~D~~v~iWd~~~~~------~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~ 150 (380)
T 3iz6_a 78 KNWIVSASQDGRLIVWNALTSQ------KTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVS 150 (380)
T ss_dssp SSCEEEEETTSEEEEEETTTTE------EEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCSSCCCSSTTC
T ss_pred CCEEEEEeCCCeEEEEECCCCc------cceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCccccCCccce
Confidence 3445566667777777654332 2345688999999999999 9999999999999999998642 1245
Q ss_pred EEeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCcEEEEE-----ecC-CCeEEEEEEcCCCcEEEEEeCCCcE
Q 010871 225 KLLNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELTKGDCIRVI-----YGV-SSQLCIRFHPVNNNFLSVGNANKEI 297 (498)
Q Consensus 225 ~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~-----~~~-~~v~~i~~~~~~~~~l~~g~~dg~i 297 (498)
..+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..+ .+| ..+.++.|++.++.+|++|+.|+.|
T Consensus 151 ~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v 230 (380)
T 3iz6_a 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230 (380)
T ss_dssp CBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCE
T ss_pred eeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeE
Confidence 6688999999999999974 57999999999999999999998887 344 4688999998788999999999999
Q ss_pred EEEEcC-CCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEee
Q 010871 298 TVFNFS-TGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFS 375 (498)
Q Consensus 298 ~iwd~~-~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 375 (498)
++||++ .++.+..+ .|...|.+++|+|++++|++|+.||.|++||++.................+...|.++.|+
T Consensus 231 ~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--- 307 (380)
T 3iz6_a 231 RLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS--- 307 (380)
T ss_dssp EEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC---
T ss_pred EEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC---
Confidence 999998 44666666 5889999999999999999999999999999976543222211111112233346666665
Q ss_pred EcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCC
Q 010871 376 LLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 376 ~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
|+|++|++|+.||.|++||+...............+...+.. +.|+| +|.+|++|+.||+|++|++...
T Consensus 308 --~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~--l~~s~-----dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 308 --ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC--LGLSS-----DGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp --SSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE--EEECS-----SSSEEEEECTTSCEEEEECCSS
T ss_pred --CCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE--EEECC-----CCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999987542211000000112222222 25555 9999999999999999999864
No 79
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.5e-33 Score=273.92 Aligned_cols=285 Identities=17% Similarity=0.252 Sum_probs=221.0
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc---eeEEeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCC--
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK---VIKLLNGHSKDVTDFDFSS-NNQYIASSSMDKTVRVWELTKG-- 263 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~-- 263 (498)
...++++|....++++|+.||.|+||++...+. ....+.+|.+.|.+++|+| ++++|++|+.||+|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 346888883334555689999999999976332 3456789999999999999 8999999999999999999987
Q ss_pred -----cEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe---ecCCCeEEEEEcCCCCEEEEEcC
Q 010871 264 -----DCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL---VVDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 264 -----~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
+.+..+.+| ..+.+++|+|++.++|++++.||.|++||+++++.+..+ .|...|.+++|+|++++|++++.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 567788877 478899999987789999999999999999999998888 37889999999999999999999
Q ss_pred CCeEEEEEccCCcccccccccccccCCCccc-eeeEEEeEeeEcCCCcEEEEE---EcCCcEEEEEccccccceeeEeEe
Q 010871 335 QGCIYSISMESHSGALSRSHRHRTTGKRKCP-VTTVQYRSFSLLAGGPVLLTC---TQDGNLSFFSVALEIQGYLTFRCS 410 (498)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~s~~~~~l~t~---s~dg~i~iwd~~~~~~~~~~~~~~ 410 (498)
||.|++||++........ ...|... +.++.|. +++.+|+++ +.|+.|++||++......... .
T Consensus 197 d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~--~ 263 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEK------DRPHEGTRPVHAVFV-----SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ--E 263 (402)
T ss_dssp TSEEEEEETTTTEEEEEE------ECSSCSSSCCEEEEC-----STTEEEEEEECTTCCEEEEEEETTBCSSCSEEE--E
T ss_pred CCcEEEEeCCCCceeeee------ccCCCCCcceEEEEc-----CCCcEEEEeccCCCCceEEEEcCccccCCceEE--e
Confidence 999999998764322111 0344443 6667666 999999999 799999999998653311111 1
Q ss_pred eccCCceeeeEEEEeeeeeccCCCEEEE-EeCCCcEEEEECCCCCccceeeecC--CCCCeEEEEEcCCCCEEEEEeCCC
Q 010871 411 LKLAPRVHSIRASFCPLLSLEKGEYIVA-GSEDSNVYFYDLAKPKHSCVNKLQG--HRFPVVAVAWNHGENLLASSDLYG 487 (498)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-gs~dg~I~iwd~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~~~Dg 487 (498)
...........|+| ++++|++ |+.||.|++||+.+++. .+..+.. |...|.+++|+|++.++++ .++
T Consensus 264 --~~~~~~v~~~~~s~-----~~~~l~~~g~~dg~i~i~d~~~~~~-~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~ 333 (402)
T 2aq5_A 264 --LDTSSGVLLPFFDP-----DTNIVYLCGKGDSSIRYFEITSEAP-FLHYLSMFSSKESQRGMGYMPKRGLEVN--KCE 333 (402)
T ss_dssp --CCCCSSCEEEEEET-----TTTEEEEEETTCSCEEEEEECSSTT-CEEEEEEECCSSCCSEEEECCGGGSCGG--GTE
T ss_pred --ccCCCceeEEEEcC-----CCCEEEEEEcCCCeEEEEEecCCCc-ceEeecccccCCcccceEEeccccccee--cce
Confidence 11122233346665 9998864 55799999999998651 1333433 5689999999999988875 467
Q ss_pred eEEEeecCCC
Q 010871 488 IVIVWKRAKT 497 (498)
Q Consensus 488 ~i~iW~~~~~ 497 (498)
.+++|++.++
T Consensus 334 ~~~~~~l~~~ 343 (402)
T 2aq5_A 334 IARFYKLHER 343 (402)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEcCCC
Confidence 9999998653
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7e-31 Score=275.74 Aligned_cols=280 Identities=16% Similarity=0.192 Sum_probs=210.3
Q ss_pred eeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCC
Q 010871 152 RTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHS 231 (498)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~ 231 (498)
...+....+..+++|......... ......+.+|...|++++|+| ++++|++|+.||+|+|||+.+ +.....+.+|.
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~~~-~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~-~~~~~~~~~h~ 472 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDKAY-GVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAA-GVSTRRFVGHT 472 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTTCS-CEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-TEEEEEEECCS
T ss_pred CEEEEEeCCCcEEEEEccCCCccc-ccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCC-CcceeEEeCCC
Confidence 345566667788888765432211 112456899999999999999 999999999999999999998 78888999999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEe---cC-CCeEEEEEEcCC-CcEEEEEeCCCcEEEEEcCCCc
Q 010871 232 KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIY---GV-SSQLCIRFHPVN-NNFLSVGNANKEITVFNFSTGR 306 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~-~~v~~i~~~~~~-~~~l~~g~~dg~i~iwd~~~~~ 306 (498)
..|.+++|+|++++|++|+.|++|++||+.......... +| ..+.+++|+|++ ...+++|+.|++|++||+++++
T Consensus 473 ~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~ 552 (694)
T 3dm0_A 473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552 (694)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence 999999999999999999999999999987554333322 23 368899999965 3689999999999999999999
Q ss_pred EEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEE
Q 010871 307 IIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT 385 (498)
Q Consensus 307 ~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t 385 (498)
....+ .|...|.+++|+|++++|++|+.||.|++||+........ ..+...|.++.|+ |++.+|++
T Consensus 553 ~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~--------~~~~~~v~~~~~s-----p~~~~l~~ 619 (694)
T 3dm0_A 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS--------LEANSVIHALCFS-----PNRYWLCA 619 (694)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC--------CBCSSCEEEEEEC-----SSSSEEEE
T ss_pred EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE--------ecCCCcEEEEEEc-----CCCcEEEE
Confidence 88888 5889999999999999999999999999999976442211 1234457766665 88887776
Q ss_pred EEcCCcEEEEEccccccceeeEeEeeccCC---------c--eeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 386 CTQDGNLSFFSVALEIQGYLTFRCSLKLAP---------R--VHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 386 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
++ ++.|++||+....... ........ . ..........+.++++|++|++|+.||.|+||++.
T Consensus 620 ~~-~~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 620 AT-EHGIKIWDLESKSIVE---DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EE-TTEEEEEETTTTEEEE---EECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred Ec-CCCEEEEECCCCCChh---hhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 65 5679999998642211 00000000 0 00000012233444599999999999999999985
No 81
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-31 Score=257.97 Aligned_cols=252 Identities=13% Similarity=0.229 Sum_probs=198.7
Q ss_pred cccccEEEEEEecCC----CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 010871 185 QCKAAVTILKFGHMS----SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSS-NNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~----~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd 259 (498)
.|...|++++|+| + +.+|++|+.||.|+|||+.+ .+.+..+.+|...|.+++|+| ++.+|++++.||.|++||
T Consensus 67 ~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 67 DADENFYTCAWTY-DSNTSHPLLAVAGSRGIIRIINPIT-MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp CTTCCEEEEEEEE-CTTTCCEEEEEEETTCEEEEECTTT-CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred CCCCcEEEEEecc-CCCCCCCEEEEecCCCEEEEEEchh-ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 3778899999999 6 56999999999999999998 788889999999999999999 899999999999999999
Q ss_pred CCCCcEEEEE---ecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-----------------------
Q 010871 260 LTKGDCIRVI---YGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV----------------------- 312 (498)
Q Consensus 260 ~~~~~~~~~~---~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----------------------- 312 (498)
+.+++.+..+ ..| ..+.+++|+| ++.+|++++.||.|++||+++++.+..+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 145 IQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp TTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred eecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 9999999888 444 5789999999 45789999999999999999876543332
Q ss_pred ------cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccccc-------ccccccCCCccceeeEEEeEeeEcCC
Q 010871 313 ------VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRS-------HRHRTTGKRKCPVTTVQYRSFSLLAG 379 (498)
Q Consensus 313 ------~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~s~~ 379 (498)
|...|.+++|+ +++|++++.||.|++||+.......... ........|...|.++.|. ++
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~ 296 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS-----MD 296 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE-----EC
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc-----CC
Confidence 78899999998 7899999999999999987654322111 0112234566677777666 77
Q ss_pred --CcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 380 --GPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 380 --~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
+.+|++++.||.|++||+..+............+........+.|+| ++++|++|+.||.|++||+.
T Consensus 297 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 297 FWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-----DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT-----TSSEEEEEETTSEEEEEEC-
T ss_pred CCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC-----CCCeEEEEeCCCEEEEEEec
Confidence 99999999999999999986543221111111111112223335665 99999999999999999985
No 82
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-32 Score=285.31 Aligned_cols=257 Identities=19% Similarity=0.210 Sum_probs=194.7
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC-CceeEEeecCCCCeEEEEEccC--CCEEEEEeCCCcEEE
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP-PKVIKLLNGHSKDVTDFDFSSN--NQYIASSSMDKTVRV 257 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~~--~~~l~s~s~dg~v~i 257 (498)
.++.+|.+.|++++|+| ++++|++|+.||.|+|||+... ......+.+|.+.|.+++|+++ +++|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 46789999999999999 8999999999999999999742 4667788999999999999988 899999999999999
Q ss_pred EECCCCc--EEEEEecC-CCeEEEEEEcCC-CcEEEEEeCCCcEEEEEcCCCcE---EEEeecCCCeEEEEEcC------
Q 010871 258 WELTKGD--CIRVIYGV-SSQLCIRFHPVN-NNFLSVGNANKEITVFNFSTGRI---IKKLVVDSEVTSMDHDH------ 324 (498)
Q Consensus 258 wd~~~~~--~~~~~~~~-~~v~~i~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~i~~l~~~~------ 324 (498)
||+.+++ .+..+..| ..+.+++|+|+. +.++++|+.||.|++||++++.. .....|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999986 66666666 578899999963 68999999999999999988732 22335888999999999
Q ss_pred -------CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEc
Q 010871 325 -------TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSV 397 (498)
Q Consensus 325 -------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~ 397 (498)
++..|++|+.||.|++||++......... .....|..+|.++.|+ |++
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~~~~h~~~V~~l~~s-----p~~----------------- 216 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE---STLEGHSDWVRDVAWS-----PTV----------------- 216 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEE---EEECCCSSCEEEEEEC-----CCC-----------------
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceee---eeecCCCCcEEEEEec-----cCC-----------------
Confidence 58899999999999999987543211110 1123445555555444 440
Q ss_pred cccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCc---cceeeecCCCCCeEEEEEc
Q 010871 398 ALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKH---SCVNKLQGHRFPVVAVAWN 474 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~---~~~~~~~~h~~~V~~l~~s 474 (498)
..+.+|++|+.||.|++||+.++.. ..+....+|...|++++|+
T Consensus 217 ---------------------------------~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 263 (753)
T 3jro_A 217 ---------------------------------LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 263 (753)
T ss_dssp ---------------------------------SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC
T ss_pred ---------------------------------CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc
Confidence 0044555555555555555544321 1233345688899999999
Q ss_pred CCCCEEEEEeCCCeEEEeecCC
Q 010871 475 HGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 475 p~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
|++.+|++|+.||.|++|++..
T Consensus 264 pdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 264 LSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp TTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCEEEEEcCCCEEEEEecCC
Confidence 9999999999999999999874
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-30 Score=279.08 Aligned_cols=310 Identities=14% Similarity=0.190 Sum_probs=238.0
Q ss_pred eeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCC
Q 010871 154 SFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKD 233 (498)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~ 233 (498)
.......+.+.+|...... ....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+ ++....+.+|.+.
T Consensus 28 la~~~~~g~v~iwd~~~~~------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~ 99 (814)
T 3mkq_A 28 VLTTLYSGRVEIWNYETQV------EVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNT-GEKVVDFEAHPDY 99 (814)
T ss_dssp EEEEETTSEEEEEETTTTE------EEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTT-CCEEEEEECCSSC
T ss_pred EEEEeCCCEEEEEECCCCc------eEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCC-CcEEEEEecCCCC
Confidence 3334444555565443321 2346778999999999999 999999999999999999998 7888899999999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCC-cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe
Q 010871 234 VTDFDFSSNNQYIASSSMDKTVRVWELTKG-DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL 311 (498)
Q Consensus 234 V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 311 (498)
|.+++|+|++++|++++.||.|++||+.++ .....+..|. .+.+++|+|.++..+++++.||.|++||+.+++....+
T Consensus 100 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 179 (814)
T 3mkq_A 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE
T ss_pred EEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE
Confidence 999999999999999999999999999987 6677777764 78899999966789999999999999999888776666
Q ss_pred e--cCCCeEEEEEcC--CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE
Q 010871 312 V--VDSEVTSMDHDH--TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT 387 (498)
Q Consensus 312 ~--~~~~i~~l~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s 387 (498)
. +...+.+++|+| ++.+|++++.+|.|++||+...... .....|...|.++.|+ |++++|++++
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------~~~~~~~~~v~~~~~~-----~~~~~l~~~~ 247 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-------ATLEGHMSNVSFAVFH-----PTLPIIISGS 247 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE-------EEEECCSSCEEEEEEC-----SSSSEEEEEE
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE-------EEEcCCCCCEEEEEEc-----CCCCEEEEEe
Confidence 3 448899999999 9999999999999999998654321 1125677888888877 9999999999
Q ss_pred cCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCC--EEEEEeCCCcEEEEECCCCCcc--------c
Q 010871 388 QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGE--YIVAGSEDSNVYFYDLAKPKHS--------C 457 (498)
Q Consensus 388 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~gs~dg~I~iwd~~~~~~~--------~ 457 (498)
.||.|++||+.+... ..........+ ....|+| ++. ++++++ ++.+.+|++...... .
T Consensus 248 ~dg~v~vwd~~~~~~----~~~~~~~~~~v--~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~ 315 (814)
T 3mkq_A 248 EDGTLKIWNSSTYKV----EKTLNVGLERS--WCIATHP-----TGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKL 315 (814)
T ss_dssp TTSCEEEEETTTCSE----EEEECCSSSSE--EEEEECT-----TCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEE
T ss_pred CCCeEEEEECCCCcE----EEEeecCCCcE--EEEEEcc-----CCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCE
Confidence 999999999975421 11111112222 2235555 776 455554 566888887643110 0
Q ss_pred e---------------------------------eeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 458 V---------------------------------NKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 458 ~---------------------------------~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+ ..+..+...+.+++|+|+|++|++++ ||.+.+|++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 316 VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp EEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred EEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 0 11233555689999999999999988 89999999753
No 84
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=7.8e-31 Score=252.47 Aligned_cols=286 Identities=14% Similarity=0.183 Sum_probs=206.7
Q ss_pred eecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEE-EEEeCCCcEEEEECC
Q 010871 183 FDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYI-ASSSMDKTVRVWELT 261 (498)
Q Consensus 183 ~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~s~dg~v~iwd~~ 261 (498)
+.+|.+.|++++|+| ++.+||+|+.+| ++||++.. ........ ...+..+++.++++.+ ++++.|++|++||+.
T Consensus 15 ~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~ 89 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHP-VAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV 89 (355)
T ss_dssp ----CCCCCEEEECT-TSSEEEEECSSE-EEEEEETT-EEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred cccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCC-cceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence 478899999999999 999999998776 78999876 44443332 2358888999888877 567788999999999
Q ss_pred CCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-cEEEEeecCCCeEEEEEcCCCCEEEE--EcCCCeE
Q 010871 262 KGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-RIIKKLVVDSEVTSMDHDHTGQLLFC--GDAQGCI 338 (498)
Q Consensus 262 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~dg~i 338 (498)
+++++..+..+..+.++.++++ .++++ .++.|++||+.++ +.+..+.. ....+++++ .++++ |+.+|.|
T Consensus 90 ~~~~~~~~~~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v 161 (355)
T 3vu4_A 90 KKQDVSRIKVDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQI 161 (355)
T ss_dssp TTEEEEEEECSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCE
T ss_pred CCcEEEEEECCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEE
Confidence 9999999998889999999873 34444 4789999999988 66655544 444556666 56665 6899999
Q ss_pred EEEEccCCcccccc--------ccc-ccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCc-EEEEEccccccceeeEe
Q 010871 339 YSISMESHSGALSR--------SHR-HRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGN-LSFFSVALEIQGYLTFR 408 (498)
Q Consensus 339 ~i~d~~~~~~~~~~--------~~~-~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~-i~iwd~~~~~~~~~~~~ 408 (498)
++||+......... ..+ .....+|..+|.++.|+ |++.+|++++.|++ |++||+.++.. ...
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s-----~~g~~l~s~s~d~~~v~iwd~~~~~~---~~~ 233 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN-----RKSDMVATCSQDGTIIRVFKTEDGVL---VRE 233 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEEC-----TTSSEEEEEETTCSEEEEEETTTCCE---EEE
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC-----CCCCEEEEEeCCCCEEEEEECCCCcE---EEE
Confidence 99999764311000 001 23357899999999887 99999999999998 99999986522 111
Q ss_pred Eeec-cCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec---------------------CCCC
Q 010871 409 CSLK-LAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ---------------------GHRF 466 (498)
Q Consensus 409 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~---------------------~h~~ 466 (498)
.... +...+. .+.|+| ++++|++|+.|++|++||+..+.......+. .+..
T Consensus 234 ~~~g~h~~~v~--~~~~s~-----~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
T 3vu4_A 234 FRRGLDRADVV--DMKWST-----DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHV 306 (355)
T ss_dssp EECTTCCSCEE--EEEECT-----TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTC
T ss_pred EEcCCCCCcEE--EEEECC-----CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCC
Confidence 1101 222222 335665 9999999999999999999865322222211 1122
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 467 PVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 467 ~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
....++|++++++|++++.||.+++|++..
T Consensus 307 ~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 307 RGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred CceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 347799999999999999999999999754
No 85
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-30 Score=253.95 Aligned_cols=279 Identities=13% Similarity=0.128 Sum_probs=206.0
Q ss_pred eeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeec---
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNG--- 229 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~--- 229 (498)
..+....++.+++|........... .+.+|.+.|++++|+|.++.+|++|+.||.|++||+.. .....+..
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~ 161 (383)
T 3ei3_B 88 TVAVGSKGGDIILWDYDVQNKTSFI----QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG--SVIQVFAKTDS 161 (383)
T ss_dssp EEEEEEBTSCEEEEETTSTTCEEEE----CCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS--CEEEEEECCCC
T ss_pred EEEEEcCCCeEEEEeCCCcccceee----ecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC--CceEEEeccCC
Confidence 4445555666777766543322211 23479999999999996678999999999999999985 44555544
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC----
Q 010871 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFST---- 304 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~---- 304 (498)
|...|.+++|+|++++|++++.||.|++||+ +++.+..+..| ..+.+++|+|++..++++|+.|+.|++||+++
T Consensus 162 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 240 (383)
T 3ei3_B 162 WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240 (383)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST
T ss_pred CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc
Confidence 4588999999999999999999999999999 57788888877 47889999997766999999999999999998
Q ss_pred CcEEEEeecCCCeEEEEEcC-CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEe------EeeEc
Q 010871 305 GRIIKKLVVDSEVTSMDHDH-TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYR------SFSLL 377 (498)
Q Consensus 305 ~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~s 377 (498)
+..+..+.|...|.+++|+| ++.+|++++.||.|++||++.................|...+.. .|+ .+.++
T Consensus 241 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~s 319 (383)
T 3ei3_B 241 NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA-TWHPMYDLIVAGRY 319 (383)
T ss_dssp TCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCC-EECSSSSEEEEECB
T ss_pred cceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEE-eccCCCCceEEEec
Confidence 77888888999999999999 99999999999999999997654432221111111233334432 232 13444
Q ss_pred CCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEE-EEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 378 AGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRA-SFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 378 ~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
+++++ +++.|+.|++||+.++.. ............+.. .|+| ++.+|++|+ ||.|++||+.+
T Consensus 320 ~dg~~--s~s~d~~i~iwd~~~~~~-----~~~l~~~~~~~~~~~~~~s~-----~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 320 PDDQL--LLNDKRTIDIYDANSGGL-----VHQLRDPNAAGIISLNKFSP-----TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCTTT--CTTCCCCEEEEETTTCCE-----EEEECBTTBCSCCCEEEECT-----TSSEEEEEE-TTEEEEEECC-
T ss_pred CCccc--ccCCCCeEEEEecCCCce-----eeeecCCCCCceEEEEEEec-----CccEEEEec-CCcEEEEecCC
Confidence 77766 778999999999976532 111111111122222 5555 999999997 99999999875
No 86
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-32 Score=271.50 Aligned_cols=265 Identities=13% Similarity=0.110 Sum_probs=189.9
Q ss_pred ccccEEEEEEecCCC---------CEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 010871 186 CKAAVTILKFGHMSS---------DLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVR 256 (498)
Q Consensus 186 h~~~V~~v~~sp~~~---------~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~ 256 (498)
+.+.|.+|+|+| ++ ++||+|+.++.. -..+|+++.|++++.|++|+
T Consensus 132 ~~~~V~sv~w~p-~~~~~~~~~~~~~LAv~~~~~~~------------------------~~~~~~~~~laS~s~D~tI~ 186 (524)
T 2j04_B 132 VGGLVTDIAWLN-IEENTDIGKDIQYLAVAVSQYMD------------------------EPLNEHLEMFDKEKHSSCIQ 186 (524)
T ss_dssp CCC--CCCSCEE-ECCCCSSCSSEEEEEEEEEC------------------------------------------CEEEE
T ss_pred CCCceeEEEecc-cCCCCccCcCCeEEEEEEecccC------------------------CccchhhhhhccCCCCceEE
Confidence 578999999999 54 799999876420 01368999999999999999
Q ss_pred EEECCCCcEE----EEEecC-CCeEEEEEEcC-----CCcEEEEEeCCCcEEEEEcCCCcEE-----------EEe-ecC
Q 010871 257 VWELTKGDCI----RVIYGV-SSQLCIRFHPV-----NNNFLSVGNANKEITVFNFSTGRII-----------KKL-VVD 314 (498)
Q Consensus 257 iwd~~~~~~~----~~~~~~-~~v~~i~~~~~-----~~~~l~~g~~dg~i~iwd~~~~~~~-----------~~~-~~~ 314 (498)
|||+.+++.. ..+.++ ..+.+++|+|+ +..+|++++.||+|++||+.++... ..+ .|.
T Consensus 187 iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~ 266 (524)
T 2j04_B 187 IFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD 266 (524)
T ss_dssp EEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT
T ss_pred EEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC
Confidence 9999887642 345555 57899999996 2479999999999999999876421 233 477
Q ss_pred CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC-cEEEEEEcCCcEE
Q 010871 315 SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG-PVLLTCTQDGNLS 393 (498)
Q Consensus 315 ~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~-~~l~t~s~dg~i~ 393 (498)
..|++++|+++ ..|++|+.||.|++||++..... ......|...|.++.+ .+++++ .+|++++.|++|+
T Consensus 267 ~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~------~~~~~~H~~~V~sv~~---~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 267 SLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVP------SFYDQVHDSYILSVST---AYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp TCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSC------SEEEECSSSCEEEEEE---ECCTTSCCEEEEEETTSEEE
T ss_pred CCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCc------eEEeecccccEEEEEE---EcCCCCCeEEEEeccCCeEE
Confidence 89999999986 48999999999999999754211 1123678899998842 122777 8999999999999
Q ss_pred EEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEE
Q 010871 394 FFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAW 473 (498)
Q Consensus 394 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~ 473 (498)
+||++........ . . +........++|+| ++..+++++.|++|++||+.++. ++..+.+|.+.|++|+|
T Consensus 337 lWD~~~~~~~~~~-~--~-~~~~~~v~~v~fsp-----~~~~l~s~~~d~tv~lwd~~~~~--~~~~l~gH~~~V~sva~ 405 (524)
T 2j04_B 337 IFNPKDIATTKTT-V--S-RFRGSNLVPVVYCP-----QIYSYIYSDGASSLRAVPSRAAF--AVHPLVSRETTITAIGV 405 (524)
T ss_dssp EECGGGHHHHCEE-E--E-ECSCCSCCCEEEET-----TTTEEEEECSSSEEEEEETTCTT--CCEEEEECSSCEEEEEC
T ss_pred EEECCCCCccccc-c--c-ccccCcccceEeCC-----CcCeEEEeCCCCcEEEEECcccc--cceeeecCCCceEEEEe
Confidence 9999864321111 1 0 11101112346666 99999999999999999999844 56778899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEeecCC
Q 010871 474 NHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 474 sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+|++++|++|+.||+|++|++..
T Consensus 406 Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 406 SRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CSSCCBCEEEETTTEEECCBSCS
T ss_pred CCCCCeEEEEECCCEEEEEechH
Confidence 99999999999999999999754
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.7e-31 Score=260.97 Aligned_cols=263 Identities=15% Similarity=0.235 Sum_probs=209.6
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC---------CceeEEeecCCCCeEEEEEccCCC-EEEEEeC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP---------PKVIKLLNGHSKDVTDFDFSSNNQ-YIASSSM 251 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~---------~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~ 251 (498)
.+.+|.+.|++++|+|+++.+||+|+.||.|+||++... ......+.+|...|.+++|+|++. +|++|+.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 457899999999999944789999999999999999752 466778899999999999999988 9999999
Q ss_pred CCcEEEEECCCCcE-------EEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC---cEEEEe-ecCCCeEE
Q 010871 252 DKTVRVWELTKGDC-------IRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG---RIIKKL-VVDSEVTS 319 (498)
Q Consensus 252 dg~v~iwd~~~~~~-------~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~-~~~~~i~~ 319 (498)
||.|++|++.++.. ...+..| ..+.+++|+|.+..+|++++.||.|++||++++ +.+..+ .|...|++
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEE
Confidence 99999999987422 3445555 478899999988899999999999999999987 455555 58889999
Q ss_pred EEEcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC-cEEEEEEcCCcEEEEEc
Q 010871 320 MDHDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG-PVLLTCTQDGNLSFFSV 397 (498)
Q Consensus 320 l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~-~~l~t~s~dg~i~iwd~ 397 (498)
++|+|++. +|++|+.||.|++||++...... .....|...|.++.|+ |++ .+|++++.|+.|++||+
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~------~~~~~h~~~v~~i~~s-----p~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKL------HSFESHKDEIFQVQWS-----PHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCS------EEEECCSSCEEEEEEC-----SSCTTEEEEEETTSCCEEEEG
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCe------EEeecCCCCEEEEEEC-----CCCCCEEEEEeCCCcEEEEeC
Confidence 99999987 78899999999999997533211 1234677788888776 777 46888888888888888
Q ss_pred cccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCC
Q 010871 398 ALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE 477 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 477 (498)
........ + . +...+....+..+.+|...|++++|+|++
T Consensus 352 ~~~~~~~~--------------------~-----~----------------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 390 (430)
T 2xyi_A 352 SKIGEEQS--------------------T-----E----------------DAEDGPPELLFIHGGHTAKISDFSWNPNE 390 (430)
T ss_dssp GGTTCCCC--------------------H-----H----------------HHHHCCTTEEEECCCCSSCEEEEEECSSS
T ss_pred CCCccccC--------------------c-----c----------------ccccCCcceEEEcCCCCCCceEEEECCCC
Confidence 64211000 0 0 00011123566778899999999999999
Q ss_pred C-EEEEEeCCCeEEEeecCC
Q 010871 478 N-LLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 478 ~-~l~s~~~Dg~i~iW~~~~ 496 (498)
+ +|++++.||.|+||++.+
T Consensus 391 ~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 391 PWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp TTEEEEEETTSEEEEEEECH
T ss_pred CCEEEEEECCCCEEEeEccc
Confidence 9 999999999999999864
No 88
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.3e-31 Score=258.25 Aligned_cols=274 Identities=15% Similarity=0.187 Sum_probs=211.4
Q ss_pred eeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCC----C---CEEEEEeCCCcEEEEEcCCCCce---
Q 010871 154 SFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMS----S---DLLAYGASDGTLTVCTVSDPPKV--- 223 (498)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~----~---~~lasg~~dg~i~iwd~~~~~~~--- 223 (498)
.+....++.+++|................+.+|...|++++|+| + + .+|++|+.||.|++|++.+ ...
T Consensus 29 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~-~~~~~~ 106 (397)
T 1sq9_A 29 TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSFSGDLLFYRITR-EDETKK 106 (397)
T ss_dssp EEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEE-CTTTCC
T ss_pred EEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEEEcCCCCEEEEEccC-Cccccc
Confidence 33444455566665544432222223456679999999999999 7 8 9999999999999999987 554
Q ss_pred --eEEeecC-----CCCeEEEEEc----cCCCE-EEEEeCCCcEEEEECCC------CcEEE-----EEec--------C
Q 010871 224 --IKLLNGH-----SKDVTDFDFS----SNNQY-IASSSMDKTVRVWELTK------GDCIR-----VIYG--------V 272 (498)
Q Consensus 224 --~~~~~~h-----~~~V~~l~~s----~~~~~-l~s~s~dg~v~iwd~~~------~~~~~-----~~~~--------~ 272 (498)
...+..| ...|.+++|+ |++++ |++++.||.|++||+.+ ++.+. .+.+ .
T Consensus 107 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (397)
T 1sq9_A 107 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 186 (397)
T ss_dssp EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSC
T ss_pred ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCC
Confidence 7788888 5999999999 99999 99999999999999998 66555 6643 3
Q ss_pred CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee----c---CCCeEEEEEcCCCCEEEEEcCC---CeEEEEE
Q 010871 273 SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV----V---DSEVTSMDHDHTGQLLFCGDAQ---GCIYSIS 342 (498)
Q Consensus 273 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----~---~~~i~~l~~~~~~~~l~~~~~d---g~i~i~d 342 (498)
..+.+++|+|++ ++++++.||.|++||+++++.+..+. | ...|.+++|+|++++|++++.| |.|++||
T Consensus 187 ~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d 264 (397)
T 1sq9_A 187 QFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 264 (397)
T ss_dssp CCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred CCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEE
Confidence 578899999965 99999999999999999999998885 5 8899999999999999999999 9999999
Q ss_pred ccCCcccccccccccccCC-------------CccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeE
Q 010871 343 MESHSGALSRSHRHRTTGK-------------RKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRC 409 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 409 (498)
+........ ... |...|.++.|. |++++|++++.||.|++||+..... ....
T Consensus 265 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~ 329 (397)
T 1sq9_A 265 TEFGERIGS-------LSVPTHSSQASLGEFAHSSWVMSLSFN-----DSGETLCSAGWDGKLRFWDVKTKER---ITTL 329 (397)
T ss_dssp TTTCCEEEE-------ECBC--------CCBSBSSCEEEEEEC-----SSSSEEEEEETTSEEEEEETTTTEE---EEEE
T ss_pred CCCCcccce-------eccCcccccccccccccCCcEEEEEEC-----CCCCEEEEEeCCCeEEEEEcCCCce---eEEE
Confidence 975432221 133 77888888877 9999999999999999999986522 1111
Q ss_pred ee-----cc---------------CCceeeeEEEEeeeeeccCC----------CEEEEEeCCCcEEEEECCCC
Q 010871 410 SL-----KL---------------APRVHSIRASFCPLLSLEKG----------EYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 410 ~~-----~~---------------~~~~~~~~~~~~~~~~~~~~----------~~l~~gs~dg~I~iwd~~~~ 453 (498)
.. .+ ...+ ..+.|+| ++ ++|++|+.||.|++|++.++
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v--~~~~~~~-----~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 330 NMHCDDIEIEEDILAVDEHGDSLAEPGV--FDVKFLK-----KGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp ECCGGGCSSGGGCCCBCTTSCBCSSCCE--EEEEEEC-----TTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ecccCcccchhhhhccccccccccCCce--eEEEecc-----ccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 10 11 2222 2335665 87 79999999999999999874
No 89
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-30 Score=250.75 Aligned_cols=252 Identities=13% Similarity=0.143 Sum_probs=202.1
Q ss_pred EeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--EEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEc
Q 010871 226 LLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD--CIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNF 302 (498)
Q Consensus 226 ~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~ 302 (498)
.+..|.++|.+++|+|++++|++++.|+.|++||+.+++ .+..+..| ..+.+++|+| ++.+|++++.||.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEEC
Confidence 345699999999999999999999999999999999987 88888877 4788999999 5578999999999999999
Q ss_pred CCCcEEEEe---ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCC
Q 010871 303 STGRIIKKL---VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG 379 (498)
Q Consensus 303 ~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~ 379 (498)
.+++....+ .+...|.+++|+|++++|++++.+|.|++||++......... .....|...|.++.|. |+
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~---~~~~~~~~~i~~~~~~-----~~ 153 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK---HIKKPIRSTVLSLDWH-----PN 153 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE---EECTTCCSCEEEEEEC-----TT
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee---eeecccCCCeeEEEEc-----CC
Confidence 988755543 478899999999999999999999999999998654321111 1125677889888887 99
Q ss_pred CcEEEEEEcCCcEEEEEccccccc--------------eeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcE
Q 010871 380 GPVLLTCTQDGNLSFFSVALEIQG--------------YLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNV 445 (498)
Q Consensus 380 ~~~l~t~s~dg~i~iwd~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I 445 (498)
+++|++++.||.|++||+...... .........+...+ ..+.|+| ++.+|++++.||.|
T Consensus 154 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~-----~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 154 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV--HGVCFSA-----NGSRVAWVSHDSTV 226 (372)
T ss_dssp SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE--EEEEECS-----SSSEEEEEETTTEE
T ss_pred CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE--EEEEECC-----CCCEEEEEeCCCEE
Confidence 999999999999999997521100 00111111112222 2235554 99999999999999
Q ss_pred EEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 446 YFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 446 ~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
++||+.++ .++..+..|...|.+++|+|++.+|++| .||.|++|++..
T Consensus 227 ~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 227 CLADADKK--MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEGGGT--TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EEEECCCC--ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999985 4688889999999999999999988877 899999999875
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-30 Score=250.18 Aligned_cols=255 Identities=18% Similarity=0.233 Sum_probs=201.0
Q ss_pred ecccccEEEEEEecCC--CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEE------ccCCCEEEEEeCCCcE
Q 010871 184 DQCKAAVTILKFGHMS--SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDF------SSNNQYIASSSMDKTV 255 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~--~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~------s~~~~~l~s~s~dg~v 255 (498)
.+|.+.|++++|+|+. +.+|++|+.||.|++||+.+.......+.+|...|.+++| +|++++|++++.||.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 4789999999999932 7999999999999999999844488899999999999955 6789999999999999
Q ss_pred EEEECCCCc-EEEEEecCC-----CeEEEE----EEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcC-
Q 010871 256 RVWELTKGD-CIRVIYGVS-----SQLCIR----FHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDH- 324 (498)
Q Consensus 256 ~iwd~~~~~-~~~~~~~~~-----~v~~i~----~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~- 324 (498)
++||+.+++ .+..+..+. .+.++. |+| ++.++++++.||.|++||+++++......+...|.+++|+|
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~ 220 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRK 220 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCS
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCC
Confidence 999999886 677776542 577888 455 56899999999999999999999888888999999999999
Q ss_pred --CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCc-EEEEEEcCCcEEEEEccccc
Q 010871 325 --TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGP-VLLTCTQDGNLSFFSVALEI 401 (498)
Q Consensus 325 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~-~l~t~s~dg~i~iwd~~~~~ 401 (498)
++.+|++++.||.|++||++........ .......|...|.++.|+ |++. +|++++.||.|++||+....
T Consensus 221 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 221 DISMNKLVATSLEGKFHVFDMRTQHPTKGF--ASVSEKAHKSTVWQVRHL-----PQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp SSSCCEEEEEESTTEEEEEEEEEEETTTEE--EEEEEECCSSCEEEEEEE-----TTEEEEEEEEETTSEEEEEEEECCS
T ss_pred CCCCCEEEEECCCCeEEEEeCcCCCcccce--eeeccCCCcCCEEEEEEC-----CCCCcEEEEEeCCCcEEEeecCCCc
Confidence 8999999999999999999764332211 111124788889998887 8888 89999999999999998543
Q ss_pred cce---------------eeEeEeeccCCceeeeEEEEeeeeeccCCCEEE-EEeCCCcEEEEECCCC
Q 010871 402 QGY---------------LTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIV-AGSEDSNVYFYDLAKP 453 (498)
Q Consensus 402 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~gs~dg~I~iwd~~~~ 453 (498)
... ........+...+. .+.|+| ++++|+ +|+.||.|++||+.+.
T Consensus 294 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~-----~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 294 QRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS--SLDWSP-----DKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CC--CCTTSCCCCCCCEEEEEEEEECCSSCEE--EEEECS-----SSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccccCCCCccccccccceeeccccCCCCee--EEEEcC-----CCCeEEEEecCCCcEEEEECCCc
Confidence 221 01111111222222 235555 999888 8999999999999874
No 91
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.9e-31 Score=264.40 Aligned_cols=274 Identities=14% Similarity=0.237 Sum_probs=205.9
Q ss_pred EecCCCCEEEEEeCCCcEEEEEcCCCCceeEEe-ecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCC---Cc---EE
Q 010871 195 FGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLL-NGHSKDVTDFDFSS-NNQYIASSSMDKTVRVWELTK---GD---CI 266 (498)
Q Consensus 195 ~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~---~~---~~ 266 (498)
|+| ++..+++++ .|+.. ++.+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +. ..
T Consensus 35 f~~-~~~~~~~~~------~w~~~--g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 35 FGP-IQEIVRSPN------MGNLR--GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GCC-CCCCCCCCC------GGGCC--CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred cCC-ccccccccc------ccccc--ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee
Confidence 566 667776654 38754 5777788 89999999999999 999999999999999999876 32 34
Q ss_pred EEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC---CCcEEEEee-------------cCCCeEEEE--EcCCCCE
Q 010871 267 RVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS---TGRIIKKLV-------------VDSEVTSMD--HDHTGQL 328 (498)
Q Consensus 267 ~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~---~~~~~~~~~-------------~~~~i~~l~--~~~~~~~ 328 (498)
..+.+...+.+++|+| ++.+|++|+.||.|++||+. +++.+..+. +...+.++. +++++.+
T Consensus 106 ~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 106 LTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred eeccCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 4555567899999999 56799999999999999995 555444332 345566666 5678999
Q ss_pred EEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEe
Q 010871 329 LFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFR 408 (498)
Q Consensus 329 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~ 408 (498)
|++|+.||.|++||++......... ...|...|.++.|. |++.+|++++.||.|++||++.+.. .
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~h~~~v~~~~~s-----~~~~~l~s~~~dg~i~iwd~~~~~~-----~ 249 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIE-----NSPRHGAVSSICID-----EECCVLILGTTRGIIDIWDIRFNVL-----I 249 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-----CCGGGCCEEEEEEC-----TTSCEEEEEETTSCEEEEETTTTEE-----E
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEc-----cCCCCCceEEEEEC-----CCCCEEEEEcCCCeEEEEEcCCccE-----E
Confidence 9999999999999997644322111 01277889888886 9999999999999999999986421 1
Q ss_pred EeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC-------------------------
Q 010871 409 CSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG------------------------- 463 (498)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~------------------------- 463 (498)
.............+.++| .+++++.+|++|+.||.|++||+.+++ ++..+.+
T Consensus 250 ~~~~~~~~~~v~~~~~~~-~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (437)
T 3gre_A 250 RSWSFGDHAPITHVEVCQ-FYGKNSVIVVGGSSKTFLTIWNFVKGH--CQYAFINSDEQPSMEHFLPIEKGLEELNFCGI 326 (437)
T ss_dssp EEEBCTTCEEEEEEEECT-TTCTTEEEEEEESTTEEEEEEETTTTE--EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred EEEecCCCCceEEEEecc-ccCCCccEEEEEcCCCcEEEEEcCCCc--EEEEEEcCCCCCccceecccccccccceeccc
Confidence 111112222222233433 333588899999999999999998754 3433332
Q ss_pred -CCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 464 -HRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 464 -h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
|...|++++|+ ++++|++|+.||.|++||+.++
T Consensus 327 ~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 327 RSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp CSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred ccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence 66678999999 7789999999999999999764
No 92
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=1e-29 Score=242.81 Aligned_cols=278 Identities=16% Similarity=0.189 Sum_probs=209.6
Q ss_pred eeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCC
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSK 232 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~ 232 (498)
..++...++.+++|.+......... ....+.+|.+.|++++|+| ++.+|++|+.|+.|++|+... .........+..
T Consensus 53 ~l~S~s~D~~i~vWd~~~~~~~~~~-~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~-~~~~~~~~~~~~ 129 (340)
T 4aow_A 53 MILSASRDKTIIMWKLTRDETNYGI-PQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTT-GTTTRRFVGHTK 129 (340)
T ss_dssp EEEEEETTSCEEEEEECCSSSCSEE-EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-TEEEEEEECCSS
T ss_pred EEEEEcCCCeEEEEECCCCCcccce-eeEEEeCCCCCEEEEEECC-CCCEEEEEcccccceEEeecc-cceeeeecCCCC
Confidence 4455666777788876544322211 2446899999999999999 999999999999999999988 677777888999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE-EecC-CCeEEEEEEcCCC-cEEEEEeCCCcEEEEEcCCCcEEE
Q 010871 233 DVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV-IYGV-SSQLCIRFHPVNN-NFLSVGNANKEITVFNFSTGRIIK 309 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~-~~v~~i~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~ 309 (498)
.+..+.+++++.+|++++.|+.+++||+........ ...| ..+.+++|.++.. .++++++.|+.|++||+++++.+.
T Consensus 130 ~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~ 209 (340)
T 4aow_A 130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 209 (340)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred ceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee
Confidence 999999999999999999999999999886654333 2334 4677889988653 577889999999999999999988
Q ss_pred Ee-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc
Q 010871 310 KL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ 388 (498)
Q Consensus 310 ~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~ 388 (498)
.+ .|...|.+++|+|++++|++|+.||.|++||++....... ..+...+.++.+. |++. +++++.
T Consensus 210 ~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~--------~~~~~~v~~~~~~-----~~~~-~~~~~~ 275 (340)
T 4aow_A 210 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT--------LDGGDIINALCFS-----PNRY-WLCAAT 275 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE--------EECSSCEEEEEEC-----SSSS-EEEEEE
T ss_pred EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee--------ecCCceEEeeecC-----CCCc-eeeccC
Confidence 88 5889999999999999999999999999999875433221 1233467777665 6654 566778
Q ss_pred CCcEEEEEccccccceeeEe-----EeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC
Q 010871 389 DGNLSFFSVALEIQGYLTFR-----CSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 389 dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~ 454 (498)
|+.|++||++.......... ....+...+ ..++|+ ++|++|++|+.||.|+|||+.+|.
T Consensus 276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~s-----~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC--TSLAWS-----ADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTEEEEEETTTTEEEEEECCC-------CCCCCE--EEEEEC-----TTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEECCCCeEEEeccccceeeeccCCCCCE--EEEEEC-----CCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999975421110000 000111112 223455 499999999999999999999864
No 93
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.1e-29 Score=242.08 Aligned_cols=257 Identities=15% Similarity=0.247 Sum_probs=207.1
Q ss_pred ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEE
Q 010871 222 KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVF 300 (498)
Q Consensus 222 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iw 300 (498)
.....+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..|. .+.+++|+| ++.+|++++.||.|++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEE
Confidence 3455688999999999999999999999999999999999999999998774 788999999 45789999999999999
Q ss_pred EcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCC-----CeEEEEEccCCcccccccc----cccccCCCcc--ceeeE
Q 010871 301 NFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQ-----GCIYSISMESHSGALSRSH----RHRTTGKRKC--PVTTV 369 (498)
Q Consensus 301 d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~----~~~~~~~~~~--~i~~~ 369 (498)
|+.+++.+..+.+...+.+++|+|+++++++++.+ |.|++|++........... .......+.. .+.++
T Consensus 102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 102 DVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred ECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 99999999999999999999999999999999998 9999999976543221110 1111123333 66666
Q ss_pred EEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEE
Q 010871 370 QYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYD 449 (498)
Q Consensus 370 ~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd 449 (498)
.|. +++++|++++.||.|++||+..... .......+...+. .+.|+| ++.+|++++.||.|++||
T Consensus 182 ~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~--~~~~~~-----~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 182 GWS-----TKGKYIIAGHKDGKISKYDVSNNYE---YVDSIDLHEKSIS--DMQFSP-----DLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp EEC-----GGGCEEEEEETTSEEEEEETTTTTE---EEEEEECCSSCEE--EEEECT-----TSSEEEEEETTSEEEEEE
T ss_pred EEc-----CCCCEEEEEcCCCEEEEEECCCCcE---eEEEEecCCCcee--EEEECC-----CCCEEEEecCCceEEEEE
Confidence 665 9999999999999999999986311 1111111222222 235555 999999999999999999
Q ss_pred CCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC--------------eEEEeecCCC
Q 010871 450 LAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYG--------------IVIVWKRAKT 497 (498)
Q Consensus 450 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg--------------~i~iW~~~~~ 497 (498)
+.+++ .+..+. +...+.+++|+|++++|++++.++ .+++|++.++
T Consensus 247 ~~~~~--~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 247 VSTLQ--VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp TTTCC--EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred CCCCc--eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 99854 455555 778999999999999999999998 8999998754
No 94
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=2.7e-29 Score=245.10 Aligned_cols=267 Identities=10% Similarity=0.098 Sum_probs=211.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCcEEEEEecCCCeEEEE
Q 010871 201 DLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYI-ASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIR 279 (498)
Q Consensus 201 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~ 279 (498)
.++++++.|+.|++||+.+ ++....+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+..+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS-NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTT-TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred EEEEEcCCCCEEEEEECCC-CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceE
Confidence 4788899999999999988 78888888775 48999999999977 677799999999999999999999888999999
Q ss_pred EEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEE-EEEcCCCeEEEEEccCCcccccccccccc
Q 010871 280 FHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLL-FCGDAQGCIYSISMESHSGALSRSHRHRT 358 (498)
Q Consensus 280 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 358 (498)
|+|++..+++++..++.|++||+.+++.+..+.+...+.+++|+|+++.| ++++.++.|++||+........ .
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~---- 154 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT--V---- 154 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--E----
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE--E----
Confidence 99977666677778899999999999999888888899999999999977 6888899999999865432211 1
Q ss_pred cCCCccceeeEEEeEeeEcCCCcEE-EEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEE
Q 010871 359 TGKRKCPVTTVQYRSFSLLAGGPVL-LTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIV 437 (498)
Q Consensus 359 ~~~~~~~i~~~~~~~~~~s~~~~~l-~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 437 (498)
..+ ..+..+.|. |+++.| ++++.++.|++||+..... ........ ....+.|+| ++++|+
T Consensus 155 -~~~-~~~~~~~~~-----~dg~~l~~~~~~~~~v~~~d~~~~~~-----~~~~~~~~--~~~~~~~~~-----~g~~l~ 215 (391)
T 1l0q_A 155 -SVG-RSPKGIAVT-----PDGTKVYVANFDSMSISVIDTVTNSV-----IDTVKVEA--APSGIAVNP-----EGTKAY 215 (391)
T ss_dssp -ECC-SSEEEEEEC-----TTSSEEEEEETTTTEEEEEETTTTEE-----EEEEECSS--EEEEEEECT-----TSSEEE
T ss_pred -ecC-CCcceEEEC-----CCCCEEEEEeCCCCEEEEEECCCCeE-----EEEEecCC--CccceEECC-----CCCEEE
Confidence 112 234555554 999887 5677889999999986521 11111222 222234554 999998
Q ss_pred EEe---CCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEE-EEEeCCCeEEEeecCCC
Q 010871 438 AGS---EDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLL-ASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 438 ~gs---~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~~~Dg~i~iW~~~~~ 497 (498)
+++ .++.|++||+.+++ .+..+..|. .+.+++|+|++++| ++++.|+.|++||++++
T Consensus 216 ~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 216 VTNVDKYFNTVSMIDTGTNK--ITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEEECSSCCEEEEEETTTTE--EEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEecCcCCCcEEEEECCCCe--EEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 888 68999999999854 566776654 57899999999877 67788999999998764
No 95
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=2e-31 Score=260.31 Aligned_cols=261 Identities=17% Similarity=0.156 Sum_probs=176.5
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc----eeEEeecCCCCeEEEEEcc--------CCCEEEEEeCC
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK----VIKLLNGHSKDVTDFDFSS--------NNQYIASSSMD 252 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~----~~~~~~~h~~~V~~l~~s~--------~~~~l~s~s~d 252 (498)
.|...+....+++ ++.+||+|+.|++|+|||+..... ....+.+|.+.|.+++|+| ++++|+|||.|
T Consensus 87 ~~~~~~~~~~~~~-~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 87 LHDGDGNVNSSPV-YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp ----------CCE-EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred ccCCCcceeecCC-CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3444455555555 888999999999999999987322 1223678999999999998 78899999999
Q ss_pred CcEEEEECCCCcEEEEE-ecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe--------------------
Q 010871 253 KTVRVWELTKGDCIRVI-YGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-------------------- 311 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-------------------- 311 (498)
++|+|||+.++.++..+ .++..+.+++|+|++..+|++|+.|++|++||+++++.....
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 99999999887766555 455789999999988789999999999999999987654332
Q ss_pred ------ecCCCeEEEEEc-CCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEE
Q 010871 312 ------VVDSEVTSMDHD-HTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLL 384 (498)
Q Consensus 312 ------~~~~~i~~l~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~ 384 (498)
.+...+.++.|. +++..|++++.|+.+++||+........ +..+...+..+.+. ++...+.
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~-------l~~~~~~~~~~~~~-----~~~~~~~ 313 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE-------ISDSTMKLGPKNLL-----PNVQGIS 313 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------------CCS-----CSEEEEC
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce-------EeeecCccccEEEc-----ccccccc
Confidence 244567788886 7999999999999999999864321110 11222222222211 2111100
Q ss_pred EEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCC
Q 010871 385 TCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGH 464 (498)
Q Consensus 385 t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h 464 (498)
.....+...+.+ ..++.++++|+.||.|++||+.++. ++..+.+|
T Consensus 314 ------------------------------~~~~~~~~~~~~---~~~~~~~~sgs~Dg~V~lwd~~~~~--~~~~~~~~ 358 (393)
T 4gq1_A 314 ------------------------------LFPSLLGACPHP---RYMDYFATAHSQHGLIQLINTYEKD--SNSIPIQL 358 (393)
T ss_dssp ------------------------------SSCCSSCCEECS---SCTTEEEEEETTTTEEEEEETTCTT--CCEEEEEC
T ss_pred ------------------------------ccCcceeEEEcc---CCCCEEEEEECCCCEEEEEECCCCc--EEEEecCC
Confidence 000111112332 1256677888899999999999854 56667788
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 465 RFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 465 ~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
..+|++|+|+|||++||+++.|| +.+|.+
T Consensus 359 ~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 359 GMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 99999999999999999998765 555554
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=5.2e-31 Score=261.88 Aligned_cols=256 Identities=11% Similarity=0.172 Sum_probs=192.8
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-----------EEEEEecC-------------CCeEEEEEEcCC
Q 010871 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD-----------CIRVIYGV-------------SSQLCIRFHPVN 284 (498)
Q Consensus 229 ~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~-----------~~~~~~~~-------------~~v~~i~~~~~~ 284 (498)
.|.+.|.+++|+|++++|++|+.||.|+|||+.+++ ....+.+| ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999999877 57788877 568899999975
Q ss_pred C-cEEEEEeCCCcEEEEEcCCCcEE---------------------------------------EE--eecCCCeEEEEE
Q 010871 285 N-NFLSVGNANKEITVFNFSTGRII---------------------------------------KK--LVVDSEVTSMDH 322 (498)
Q Consensus 285 ~-~~l~~g~~dg~i~iwd~~~~~~~---------------------------------------~~--~~~~~~i~~l~~ 322 (498)
. .+|++++.|+.|++||+.+++.. .. ..|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 4 68889999999999999775442 12 247889999999
Q ss_pred cCCCCEEEEEcCCCeEEEEEccCCccccc-ccccccccCCCccceeeEEEeEeeEcCCC-cEEEEEEcCCcEEEEEcccc
Q 010871 323 DHTGQLLFCGDAQGCIYSISMESHSGALS-RSHRHRTTGKRKCPVTTVQYRSFSLLAGG-PVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 323 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~s~~~-~~l~t~s~dg~i~iwd~~~~ 400 (498)
+|++++|++| .||.|++||++....... ..........|...|.++.|+ |++ .+|++++.||.|++||++..
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-----PNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-----SSCTTEEEEEETTSCEEEEETTTC
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-----CCCCcEEEEEeCCCeEEEEECcCC
Confidence 9999999999 799999999974322111 101111245788889998887 888 99999999999999999865
Q ss_pred ccceeeEeEeeccCCc----------eeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCC---
Q 010871 401 IQGYLTFRCSLKLAPR----------VHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFP--- 467 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~--- 467 (498)
................ .....+.|+| +|++|++++. +.|++||+.+. ..++..+.+|...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~g~~l~~~~~-~~v~iwd~~~~-~~~~~~~~~~~~~~~~ 332 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-----SGRYMMTRDY-LSVKVWDLNME-NRPVETYQVHEYLRSK 332 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-----TSSEEEEEES-SEEEEEETTCC-SSCSCCEESCGGGTTT
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECC-----CCCEEEEeeC-CeEEEEeCCCC-ccccceeecccccccc
Confidence 3211000111111100 0122235554 9999999999 99999999862 2357777777542
Q ss_pred ------------eEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 468 ------------VVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 468 ------------V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
+..++|+|++++|++|+.||.|++||+.++
T Consensus 333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 334999999999999999999999999865
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.4e-29 Score=237.22 Aligned_cols=249 Identities=16% Similarity=0.163 Sum_probs=199.6
Q ss_pred EcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCC
Q 010871 216 TVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNAN 294 (498)
Q Consensus 216 d~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~d 294 (498)
|...+.+....+.+|.+.|.+++| +++++|++++.||.|++||+.+++....+..| ..+.+++|+| ++.++++|+.|
T Consensus 3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 80 (313)
T 3odt_A 3 DPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKD 80 (313)
T ss_dssp --CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEET-TTTEEEEEETT
T ss_pred CccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECC-CCCEEEEecCC
Confidence 344445778899999999999999 99999999999999999999999888888776 5788999999 55799999999
Q ss_pred CcEEEEEcCCC---cEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEE
Q 010871 295 KEITVFNFSTG---RIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQ 370 (498)
Q Consensus 295 g~i~iwd~~~~---~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 370 (498)
|.|++|++... +.+..+ .|...|.+++| +++++++++.||.|++||.. ... .....|...+.++.
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~----~~~-----~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG----SLV-----YNLQAHNASVWDAK 149 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT----EEE-----EEEECCSSCEEEEE
T ss_pred CeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC----cEE-----EecccCCCceeEEE
Confidence 99999998764 444445 58889999999 57899999999999999821 111 11356788898888
Q ss_pred EeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEEC
Q 010871 371 YRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDL 450 (498)
Q Consensus 371 ~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~ 450 (498)
+.+ +++.++++++.||.|++||.... ...........+ ..+.|+| ++. +++++.||.|++||+
T Consensus 150 ~~~----~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~i--~~~~~~~-----~~~-~~~~~~dg~i~i~d~ 212 (313)
T 3odt_A 150 VVS----FSENKFLTASADKTIKLWQNDKV-----IKTFSGIHNDVV--RHLAVVD-----DGH-FISCSNDGLIKLVDM 212 (313)
T ss_dssp EEE----TTTTEEEEEETTSCEEEEETTEE-----EEEECSSCSSCE--EEEEEEE-----TTE-EEEEETTSEEEEEET
T ss_pred Ecc----CCCCEEEEEECCCCEEEEecCce-----EEEEeccCcccE--EEEEEcC-----CCe-EEEccCCCeEEEEEC
Confidence 873 48999999999999999995421 111111122333 3336666 777 999999999999999
Q ss_pred CCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 451 AKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 451 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
.++ ..+..+.+|...|++++|+|++ .|++++.||.|++||+.++
T Consensus 213 ~~~--~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 213 HTG--DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp TTC--CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred Cch--hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence 985 4688899999999999999999 5889999999999998765
No 98
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-29 Score=251.47 Aligned_cols=291 Identities=9% Similarity=0.035 Sum_probs=214.6
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc---eeEEee-----------------------------------
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK---VIKLLN----------------------------------- 228 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~---~~~~~~----------------------------------- 228 (498)
..++.+++|+| +|++|+++ .++.|++||+.+ ++ .+..+.
T Consensus 4 ~~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 4 IHPLQNLLTSR-DGSLVFAI-IKNCILSFKYQS-PNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp ECCCCEEEECS-SSSEEEEE-ETTEEEEEEEET-TTEEEEEEEEECCC--------------------------------
T ss_pred cccEEEEEecC-CCCEEEEE-eCCeEEEEECCC-CCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 34789999999 88876666 478999999987 55 444444
Q ss_pred -------------------cCCCCeEEEEEccCCCEE-EEEeCCCcEEEEECC--CCcEEEEEec---CCCeEEEEEEcC
Q 010871 229 -------------------GHSKDVTDFDFSSNNQYI-ASSSMDKTVRVWELT--KGDCIRVIYG---VSSQLCIRFHPV 283 (498)
Q Consensus 229 -------------------~h~~~V~~l~~s~~~~~l-~s~s~dg~v~iwd~~--~~~~~~~~~~---~~~v~~i~~~~~ 283 (498)
+|.+.|.+++|+|++++| ++++.||.|++||+. +++.+..+.. ...+.+++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 244479999999999996 899999999999999 8888888753 357899999995
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCcEEE----Ee-ecCCCeEEEEEcCC---CCEEEEEcCCCeEEEEEccCCccccccccc
Q 010871 284 NNNFLSVGNANKEITVFNFSTGRIIK----KL-VVDSEVTSMDHDHT---GQLLFCGDAQGCIYSISMESHSGALSRSHR 355 (498)
Q Consensus 284 ~~~~l~~g~~dg~i~iwd~~~~~~~~----~~-~~~~~i~~l~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 355 (498)
+.+|++|+.+|.|++|++.+++... .+ .|...|.+++|+|+ +++|++|+.|+.|++||++.......
T Consensus 161 -~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---- 235 (450)
T 2vdu_B 161 -DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK---- 235 (450)
T ss_dssp -SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE----
T ss_pred -CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee----
Confidence 5788999999999999998877543 33 58889999999999 99999999999999999875432211
Q ss_pred ccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccC---------------Cceeee
Q 010871 356 HRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLA---------------PRVHSI 420 (498)
Q Consensus 356 ~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------~~~~~~ 420 (498)
...+|...|.++.| + ++.+|++++.|+.|++||+.++..... +....... ......
T Consensus 236 --~~~~h~~~v~~~~~-----s-d~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 236 --WLFGHKHFVSSICC-----G-KDYLLLSAGGDDKIFAWDWKTGKNLST-FDYNSLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp --ECCCCSSCEEEEEE-----C-STTEEEEEESSSEEEEEETTTCCEEEE-EECHHHHGGGCCTTSBC----------CB
T ss_pred --eecCCCCceEEEEE-----C-CCCEEEEEeCCCeEEEEECCCCcEeee-ecchhhhhhhhhhcccccccccccccccc
Confidence 12567888888766 3 799999999999999999986532111 11000000 000001
Q ss_pred EEEEeeeeeccCCCEEEEEe-CCCcEEEEEC--CCC-CccceeeecCCCCCeEEEEEcCCCCEEEEEeC-------CCeE
Q 010871 421 RASFCPLLSLEKGEYIVAGS-EDSNVYFYDL--AKP-KHSCVNKLQGHRFPVVAVAWNHGENLLASSDL-------YGIV 489 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~gs-~dg~I~iwd~--~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-------Dg~i 489 (498)
......+.+++++++|++++ .++.|++|++ ..+ ....+..+.+| +.|.+++|+|++ ++++.+. +..|
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i 384 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFA 384 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSE
T ss_pred eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcce
Confidence 11233344445999999999 8999999999 432 23567778888 889999999954 4554433 4568
Q ss_pred EEeecCC
Q 010871 490 IVWKRAK 496 (498)
Q Consensus 490 ~iW~~~~ 496 (498)
.+|.+..
T Consensus 385 ~v~~~~~ 391 (450)
T 2vdu_B 385 KFIEYNL 391 (450)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 8887653
No 99
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.1e-29 Score=251.32 Aligned_cols=279 Identities=12% Similarity=0.101 Sum_probs=220.0
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeE-----EeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIK-----LLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK 262 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~-----~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 262 (498)
..+.+++|+| ++.++++++.++.|++||+.+ ++... .+.+|...|.+++|+++++++++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFID-NTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESS-SSEEEEEBTTSSSEEEEETTT-CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeC-CCeEEEEeCCCCeEEEEECCC-CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 3466999999 888999999999999999987 55555 3457999999999999999999999999999999999
Q ss_pred CcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEc--------
Q 010871 263 GDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGD-------- 333 (498)
Q Consensus 263 ~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-------- 333 (498)
++.+..+..+. .+.+++|+|++..++++++.++.|++||+++++.+..+.....+.+++|+|+++.+++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 280 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQES 280 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCS
T ss_pred ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcccc
Confidence 99999888664 788999999776666777789999999999999998888778899999999999998887
Q ss_pred CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEE-EEEEcCCcEEEEEccccccceeeEeEeec
Q 010871 334 AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVL-LTCTQDGNLSFFSVALEIQGYLTFRCSLK 412 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l-~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 412 (498)
.||.|++||+........ ..+...+..+.| +|+++.+ ++++.|+.|++||+.+... .....
T Consensus 281 ~dg~i~~~d~~~~~~~~~--------~~~~~~~~~~~~-----~~~g~~l~~~~~~~~~v~v~d~~~~~~-----~~~~~ 342 (433)
T 3bws_A 281 GGGRLGIYSMDKEKLIDT--------IGPPGNKRHIVS-----GNTENKIYVSDMCCSKIEVYDLKEKKV-----QKSIP 342 (433)
T ss_dssp CCEEEEEEETTTTEEEEE--------EEEEECEEEEEE-----CSSTTEEEEEETTTTEEEEEETTTTEE-----EEEEE
T ss_pred CCCeEEEEECCCCcEEee--------ccCCCCcceEEE-----CCCCCEEEEEecCCCEEEEEECCCCcE-----EEEec
Confidence 588999999875422111 122334555554 4999755 6668999999999985421 11112
Q ss_pred cCCceeeeEEEEeeeeeccCCCEEEEEeC---------------CCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCC
Q 010871 413 LAPRVHSIRASFCPLLSLEKGEYIVAGSE---------------DSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE 477 (498)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs~---------------dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 477 (498)
....+ ..+.|+| +|+++++++. ||.|++||+.+++ .+..+.. ...+.+++|+|++
T Consensus 343 ~~~~~--~~~~~s~-----dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~--~~~~~~~-~~~~~~~~~s~dg 412 (433)
T 3bws_A 343 VFDKP--NTIALSP-----DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT--VKEFWEA-GNQPTGLDVSPDN 412 (433)
T ss_dssp CSSSE--EEEEECT-----TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE--EEEEEEC-SSSEEEEEECTTS
T ss_pred CCCCC--CeEEEcC-----CCCEEEEEecCCCccccccccccccceEEEEEECCCCc--EEEEecC-CCCCceEEEcCCC
Confidence 22222 2335555 9998888876 5799999998854 5566655 4579999999999
Q ss_pred CEEEEEeC-CCeEEEeecCC
Q 010871 478 NLLASSDL-YGIVIVWKRAK 496 (498)
Q Consensus 478 ~~l~s~~~-Dg~i~iW~~~~ 496 (498)
++|++++. |+.|++|+++.
T Consensus 413 ~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 413 RYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CEEEEEETTTTEEEEEEETT
T ss_pred CEEEEEECCCCeEEEEEecC
Confidence 99988875 99999999864
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.2e-29 Score=242.59 Aligned_cols=253 Identities=15% Similarity=0.178 Sum_probs=195.9
Q ss_pred EeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc----EEEEEecCCCeEEEEEEcCCCc-EEEEEeCCCcEEEE
Q 010871 226 LLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD----CIRVIYGVSSQLCIRFHPVNNN-FLSVGNANKEITVF 300 (498)
Q Consensus 226 ~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~v~~i~~~~~~~~-~l~~g~~dg~i~iw 300 (498)
...+|.+.|.+++|+|++++|++++.||.|++|++.++. ......+...+.+++|+|+ +. +|++|+.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC-CCcEEEEEcCCCeEEEE
Confidence 345899999999999999999999999999999999887 4444444468899999995 57 89999999999999
Q ss_pred Ec-CCCcEEEEee--cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccc--cccccccCCCccceeeEEEeEee
Q 010871 301 NF-STGRIIKKLV--VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSR--SHRHRTTGKRKCPVTTVQYRSFS 375 (498)
Q Consensus 301 d~-~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~ 375 (498)
|+ .+++...... |...|.+++|+| +..|++++.||.|++||++........ ..... ...+...+.++.+.
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~--- 159 (342)
T 1yfq_A 85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-NTKVKNKIFTMDTN--- 159 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS-SSSSCCCEEEEEEC---
T ss_pred EeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee-EEeeCCceEEEEec---
Confidence 99 8887755556 889999999999 999999999999999998741110000 00001 12367788888875
Q ss_pred EcCCCcEEEEEEcCCcEEEEEccc-cccceeeEeEeeccCCceeeeEEEEeeeeecc-CCCEEEEEeCCCcEEEEECCCC
Q 010871 376 LLAGGPVLLTCTQDGNLSFFSVAL-EIQGYLTFRCSLKLAPRVHSIRASFCPLLSLE-KGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 376 ~s~~~~~l~t~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
+++ +++++.|+.|++||++. ...... .....+... ...+.+++ ++++|++|+.||.|++|++...
T Consensus 160 --~~~--l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~-------i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 160 --SSR--LIVGMNNSQVQWFRLPLCEDDNGT--IEESGLKYQ-------IRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp --SSE--EEEEESTTEEEEEESSCCTTCCCE--EEECSCSSC-------EEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred --CCc--EEEEeCCCeEEEEECCccccccce--eeecCCCCc-------eeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 555 99999999999999986 322111 111112222 23344557 8999999999999999999875
Q ss_pred --C--ccceeeecCCCC---------CeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 454 --K--HSCVNKLQGHRF---------PVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 454 --~--~~~~~~~~~h~~---------~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
. ......+.+|.. .|.+++|+|++++|++++.||.|++||+.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 1 145677777765 9999999999999999999999999999864
No 101
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.8e-31 Score=256.16 Aligned_cols=254 Identities=12% Similarity=0.177 Sum_probs=189.1
Q ss_pred EeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEc
Q 010871 226 LLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG--DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNF 302 (498)
Q Consensus 226 ~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~ 302 (498)
.+..|.+.|.+++|+|++++|++|+.||.|++||+.++ +.+..+.+|. .+.+++|+|+ +.+|++++.|+.|++||+
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT-TCCEEEEETTSSEEEC--
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC-CCEEEEEeCCCeEEEEEc
Confidence 34557789999999999999999999999999999988 6777777774 7889999995 578999999999999999
Q ss_pred CCCc---EEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCC-CccceeeEEEeEeeEc
Q 010871 303 STGR---IIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGK-RKCPVTTVQYRSFSLL 377 (498)
Q Consensus 303 ~~~~---~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~s 377 (498)
.+++ ....+ .|...|.+++|+|++++|++++.|+.|++||++........ ..... |...|.++.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~h~~~v~~~~~~----- 155 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS----KHLKRPLRSTILSLDWH----- 155 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC----EEECSSCCSCEEEEEEC-----
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee----eEeecccCCCeEEEEEc-----
Confidence 9887 44444 68899999999999999999999999999998765421110 11233 88899998887
Q ss_pred CCCcEEEEEEcCCcEEEEEccccccce-----------eeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEE
Q 010871 378 AGGPVLLTCTQDGNLSFFSVALEIQGY-----------LTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVY 446 (498)
Q Consensus 378 ~~~~~l~t~s~dg~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~ 446 (498)
|++++|++++.|+.|++||+....... ........+........+.|+| ++++|++|+.||.|+
T Consensus 156 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~i~ 230 (377)
T 3dwl_C 156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP-----SGNALAYAGHDSSVT 230 (377)
T ss_dssp TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECT-----TSSCEEEEETTTEEC
T ss_pred CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECC-----CCCEEEEEeCCCcEE
Confidence 999999999999999999986321100 0111111111111122235555 999999999999999
Q ss_pred EEECCCCCcc--ceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 447 FYDLAKPKHS--CVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 447 iwd~~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+||+.+++.. .+..+.+|...|.+++|+|++++|++|+.|+.+ +|+..
T Consensus 231 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 231 IAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp -CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999986531 267888999999999999999999999877666 66554
No 102
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6.9e-29 Score=243.21 Aligned_cols=268 Identities=13% Similarity=0.174 Sum_probs=207.2
Q ss_pred eeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCe
Q 010871 155 FSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDV 234 (498)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V 234 (498)
+.....+.+.+|.......... ....|.+.|++++|+| ++.+|++|+.||.|++||+.+ .+.+..+.+|...|
T Consensus 107 ~~~~~d~~v~lw~~~~~~~~~~-----~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v 179 (401)
T 4aez_A 107 VAVALERNVYVWNADSGSVSAL-----AETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVES-QTKLRTMAGHQARV 179 (401)
T ss_dssp EEEEETTEEEEEETTTCCEEEE-----EECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCE
T ss_pred EEEECCCeEEEeeCCCCcEeEe-----eecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcC-CeEEEEecCCCCce
Confidence 3344556667776654433222 2233899999999999 999999999999999999988 78888999999999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECC-CCcEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-
Q 010871 235 TDFDFSSNNQYIASSSMDKTVRVWELT-KGDCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL- 311 (498)
Q Consensus 235 ~~l~~s~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~- 311 (498)
.+++|+ +.+|++++.||.|++||+. .+..+..+..|. .+.+++|+| ++.+|++|+.||.|++||+++++.+..+
T Consensus 180 ~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 256 (401)
T 4aez_A 180 GCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKT 256 (401)
T ss_dssp EEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEEC
T ss_pred EEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEec
Confidence 999994 5699999999999999999 566777787774 788999999 5689999999999999999999988887
Q ss_pred ecCCCeEEEEEcCCCC-EEEEEc--CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-
Q 010871 312 VVDSEVTSMDHDHTGQ-LLFCGD--AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT- 387 (498)
Q Consensus 312 ~~~~~i~~l~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s- 387 (498)
.+...|.+++|+|++. ++++++ .||.|++||+........ ..+...|.++.|+ +++++|++++
T Consensus 257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~--------~~~~~~v~~~~~s-----~~~~~l~~~~g 323 (401)
T 4aez_A 257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT--------VDAGSQVTSLIWS-----PHSKEIMSTHG 323 (401)
T ss_dssp CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE--------EECSSCEEEEEEC-----SSSSEEEEEEC
T ss_pred CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE--------EeCCCcEEEEEEC-----CCCCeEEEEee
Confidence 5888999999999775 666654 799999999875432221 1244567777776 9999999955
Q ss_pred -cCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC
Q 010871 388 -QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 388 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~ 454 (498)
.||.|++||+....... ......+...+. .+.|+| ++.+|++++.||.|++|++.+++
T Consensus 324 ~~dg~i~v~~~~~~~~~~--~~~~~~h~~~v~--~~~~s~-----dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 324 FPDNNLSIWSYSSSGLTK--QVDIPAHDTRVL--YSALSP-----DGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp TTTCEEEEEEEETTEEEE--EEEEECCSSCCC--EEEECT-----TSSEEEEECTTSEEEEEECCC--
T ss_pred cCCCcEEEEecCCcccee--EEEecCCCCCEE--EEEECC-----CCCEEEEEeCCCcEEEEECCCCc
Confidence 89999999998642111 111112222222 235655 99999999999999999999864
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-30 Score=255.13 Aligned_cols=244 Identities=10% Similarity=0.050 Sum_probs=198.6
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCC-----CeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSK-----DVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~-----~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
+|...|++++||| +|.+||+++.||.|+|||... ++..+. |.. .|.+++|+|||++|++|+.||+|+|||
T Consensus 83 ~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 83 QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 5578899999999 999999999999999999643 666667 665 599999999999999999999999999
Q ss_pred CCCCc-------EEEEEecC-----CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE---EEEe--ecCCCeEEEEE
Q 010871 260 LTKGD-------CIRVIYGV-----SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI---IKKL--VVDSEVTSMDH 322 (498)
Q Consensus 260 ~~~~~-------~~~~~~~~-----~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~--~~~~~i~~l~~ 322 (498)
+.++. .+.++..+ ..|.+++|+|++ +++++.|+.|++||+..+.. ...+ .|...|.+++|
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 99885 36777433 378999999965 77888999999999988773 3455 36688999999
Q ss_pred cCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEE--eEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 323 DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQY--RSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 323 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
+ |+.|++++ ++.|++||+........ ..+|...+..+.+ . +++..|++++.||+ ++|...
T Consensus 235 s--g~~LASa~-~~tIkLWd~~~~~~~~~-------~~gh~~~V~~va~~~s-----~d~~~La~a~edG~-klw~~d-- 296 (588)
T 2j04_A 235 V--DYKVVLTC-PGYVHKIDLKNYSISSL-------KTGSLENFHIIPLNHE-----KESTILLMSNKTSY-KVLLED-- 296 (588)
T ss_dssp E--TTEEEEEC-SSEEEEEETTTTEEEEE-------ECSCCSCCCEEEETTC-----SSCEEEEECSSCEE-EEEESS--
T ss_pred E--CCEEEEEe-CCeEEEEECCCCeEEEE-------EcCCCceEEEEEeeeC-----CCCCEEEEEcCCCC-EEEeec--
Confidence 9 68899887 69999999875443211 1368888988877 6 99999999999999 999875
Q ss_pred ccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEE
Q 010871 401 IQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLL 480 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 480 (498)
...++| ++..+++. |+++++|+..... +..+.+ ...|.+++|+|||+.+
T Consensus 297 --------------------~~~~sp-----d~~l~a~~--d~~v~lW~~~g~~---l~~~~~-~~~I~~va~SPdG~~l 345 (588)
T 2j04_A 297 --------------------ELHVTA-----DNIIAPYL--EKKFKKWSTIWNE---FNNYET-TLVIHGISLSPDGYSI 345 (588)
T ss_dssp --------------------SEEEEC-----CCSSHHHH--HHHHHHTTTTTTS---SSSSCC-EEEEEEEEECTTSSEE
T ss_pred --------------------cEEECC-----CceEEEEc--CCEEEEEECCCCc---eeeecc-ceEEEEEEECCCCCEE
Confidence 023555 88877775 9999999986543 445554 6779999999999999
Q ss_pred EEEeC
Q 010871 481 ASSDL 485 (498)
Q Consensus 481 ~s~~~ 485 (498)
|+++.
T Consensus 346 A~~~~ 350 (588)
T 2j04_A 346 AIVYD 350 (588)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98873
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.5e-29 Score=247.97 Aligned_cols=254 Identities=15% Similarity=0.222 Sum_probs=201.3
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC------ceeEEeecCCCCeEEEEEccCC-CEEEEEeCCC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP------KVIKLLNGHSKDVTDFDFSSNN-QYIASSSMDK 253 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~------~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg 253 (498)
..+.+|.+.|++++|+|.++.+||+|+.||.|+|||+.+.. .....+.+|...|.+++|+|++ .+|++++.||
T Consensus 75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence 35789999999999999778999999999999999998732 5678899999999999999998 6999999999
Q ss_pred cEEEEECCCCcEEEEE--ecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe--ecCCC-eEEEEEcCCCC
Q 010871 254 TVRVWELTKGDCIRVI--YGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL--VVDSE-VTSMDHDHTGQ 327 (498)
Q Consensus 254 ~v~iwd~~~~~~~~~~--~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~~~~-i~~l~~~~~~~ 327 (498)
.|++||+.+++.+..+ ..| ..+.+++|+| ++.+|++++.||.|++||+++++.+..+ .|... +.+++|+|++.
T Consensus 155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK 233 (402)
T ss_dssp CEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred EEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence 9999999999999998 555 4788999999 5578889999999999999999998887 35444 89999999999
Q ss_pred EEEEE---cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEE-EcCCcEEEEEccccccc
Q 010871 328 LLFCG---DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC-TQDGNLSFFSVALEIQG 403 (498)
Q Consensus 328 ~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~-s~dg~i~iwd~~~~~~~ 403 (498)
+|++| +.++.|++||++......... ...+...+.++.|. |++.+|+++ +.||.|++||+......
T Consensus 234 ~l~~g~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~s-----~~~~~l~~~g~~dg~i~i~d~~~~~~~ 303 (402)
T 2aq5_A 234 ILTTGFSRMSERQVALWDTKHLEEPLSLQ-----ELDTSSGVLLPFFD-----PDTNIVYLCGKGDSSIRYFEITSEAPF 303 (402)
T ss_dssp EEEEEECTTCCEEEEEEETTBCSSCSEEE-----ECCCCSSCEEEEEE-----TTTTEEEEEETTCSCEEEEEECSSTTC
T ss_pred EEEEeccCCCCceEEEEcCccccCCceEE-----eccCCCceeEEEEc-----CCCCEEEEEEcCCCeEEEEEecCCCcc
Confidence 99999 899999999997654322111 12455667777776 999999755 47999999999865421
Q ss_pred eeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCc
Q 010871 404 YLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKH 455 (498)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~ 455 (498)
... .........+. .+.|+| ++.++++ .++.+++|++.++..
T Consensus 304 ~~~-l~~~~~~~~v~--~~~~sp-----~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 304 LHY-LSMFSSKESQR--GMGYMP-----KRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEE-EEEECCSSCCS--EEEECC-----GGGSCGG--GTEEEEEEEEETTEE
T ss_pred eEe-ecccccCCccc--ceEEec-----cccccee--cceeEEEEEcCCCcE
Confidence 111 11111223333 336665 8888764 466999999987543
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.8e-29 Score=242.29 Aligned_cols=252 Identities=14% Similarity=0.186 Sum_probs=197.3
Q ss_pred CceeEEeecCCCCeEEEEEccC---CCEEEEEeCCCcEEEEECCC-CcEE-EEEecC-CCeEEEEEEcCCCcEEEEEeCC
Q 010871 221 PKVIKLLNGHSKDVTDFDFSSN---NQYIASSSMDKTVRVWELTK-GDCI-RVIYGV-SSQLCIRFHPVNNNFLSVGNAN 294 (498)
Q Consensus 221 ~~~~~~~~~h~~~V~~l~~s~~---~~~l~s~s~dg~v~iwd~~~-~~~~-~~~~~~-~~v~~i~~~~~~~~~l~~g~~d 294 (498)
...+..+.+|.+.|.+++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+| ..+.+++|+| ++.+|++++.|
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d 107 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCD 107 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETT
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCC
Confidence 5677788999999999999999 59999999999999999997 5554 666666 5788999999 55789999999
Q ss_pred CcEEEEEcCCCcEEEEeecCCCeEEEEE--cCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEe
Q 010871 295 KEITVFNFSTGRIIKKLVVDSEVTSMDH--DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYR 372 (498)
Q Consensus 295 g~i~iwd~~~~~~~~~~~~~~~i~~l~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 372 (498)
|.|++||+.+++.+....|...|.+++| ++++.+|++++.||.|++||++........ ..+ ..+.++.+
T Consensus 108 g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~-~~~~~~~~- 178 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL-------QLP-ERCYCADV- 178 (368)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE-------ECS-SCEEEEEE-
T ss_pred CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE-------ecC-CCceEEEe-
Confidence 9999999999999888889999999999 899999999999999999998765432211 111 23444443
Q ss_pred EeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCC----EEEEEeCCCcEEEE
Q 010871 373 SFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGE----YIVAGSEDSNVYFY 448 (498)
Q Consensus 373 ~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~gs~dg~I~iw 448 (498)
....+++++.++.+.+|++......... ...........+ .+.+ +.. .+++|+.||.|++|
T Consensus 179 ------~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 179 ------IYPMAVVATAERGLIVYQLENQPSEFRR--IESPLKHQHRCV--AIFK-----DKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp ------ETTEEEEEEGGGCEEEEECSSSCEEEEE--CCCSCSSCEEEE--EEEE-----CTTSCEEEEEEEETTSEEEEE
T ss_pred ------cCCeeEEEeCCCcEEEEEeccccchhhh--ccccccCCCceE--EEcc-----cCCCCCCeEEEecCCCcEEEE
Confidence 3568999999999999999854321111 111112222222 2222 232 39999999999999
Q ss_pred ECCCCCc-cceeeecCCCC------------CeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 449 DLAKPKH-SCVNKLQGHRF------------PVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 449 d~~~~~~-~~~~~~~~h~~------------~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
|+..... ..+..+.+|.. .|++++|+|++++|++|+.||.|++||+.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 9998643 45677778776 7999999999999999999999999999864
No 106
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=3.3e-30 Score=255.36 Aligned_cols=280 Identities=10% Similarity=0.091 Sum_probs=195.1
Q ss_pred eeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee--cC
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN--GH 230 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~--~h 230 (498)
+......++.+++|.........+ ..+.+|.+.|++|+|+|.++.+|++|+.||+|+|||+.+ ........ .+
T Consensus 134 ~lasGs~dg~i~lWd~~~~~~~~~----~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~ 208 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKDKPTF----IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NILRVFASSDTI 208 (435)
T ss_dssp CEEEEETTSCEEEECSSCCSCCEE----ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS-CEEEEEECCSSC
T ss_pred EEEEEeCCCEEEEEECCCCCceeE----EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC-CceeEEeccCCC
Confidence 344555677788887654433322 245789999999999997789999999999999999976 33333333 24
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEE
Q 010871 231 SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIK 309 (498)
Q Consensus 231 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 309 (498)
...+.+++|+|++.+|++|+.||.|++||++. +.+..+.+| ..|.+++|+|++..++++|+.|+.|++||+++.+...
T Consensus 209 ~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 209 NIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287 (435)
T ss_dssp SCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred CccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc
Confidence 45688999999999999999999999999874 555666666 4788999999888899999999999999998876443
Q ss_pred Ee----ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEE
Q 010871 310 KL----VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT 385 (498)
Q Consensus 310 ~~----~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t 385 (498)
.+ .|...|.+++|+|++.+|++++.||.|++||+..................+. .+....+ ++++..+++
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~ 361 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHL-TPIKAAW-----HPRYNLIVV 361 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSS-CCCBCEE-----CSSSSCEEE
T ss_pred eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccc-eeEEEEE-----cCCCCEEEE
Confidence 33 5788999999999999999999999999999876543322111100001111 1112222 255555555
Q ss_pred EE------------cCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCC
Q 010871 386 CT------------QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 386 ~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
++ .++.|++||..++.. .......+...+..+ ..|+| +|.+|++|+ |+.|+||++.++
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~---~~~l~~~~~~~v~s~-~~fsp-----dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKM---MCQLYDPESSGISSL-NEFNP-----MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCCE---EEEECCSSCCCCCCE-EEECT-----TSSCEEEEC-SSEEEECCCC--
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCcE---EEEEeCCCCCcEEEE-EEECC-----CCCEEEEEc-CCcEEEEECCcC
Confidence 53 345799999876522 111111122222221 13555 999999876 789999999986
Q ss_pred C
Q 010871 454 K 454 (498)
Q Consensus 454 ~ 454 (498)
+
T Consensus 432 k 432 (435)
T 4e54_B 432 R 432 (435)
T ss_dssp -
T ss_pred e
Confidence 4
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-30 Score=254.17 Aligned_cols=270 Identities=12% Similarity=0.094 Sum_probs=200.2
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
...|.+|+|+| ||+++|+++.|++|+ |... . ..+.+|...|.+++|+|+| .++.+.+|+.+... +
T Consensus 15 ~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~-~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~ 79 (588)
T 2j04_A 15 EDWKNNLTWAR-DGTLYLTTFPDISIG--QPKY-A---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-L 79 (588)
T ss_dssp SSSSCCEEECT-TSCEEEECSSSEEEE--EECC-C---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-S
T ss_pred hccEEEEEECC-CCCEEEEEcCCceee--cccc-c---ceecCCCccEEEEEECCCC-------CcceEEEEeCCCce-E
Confidence 57899999999 999999999999999 7554 3 3347999999999999998 56666666644222 2
Q ss_pred EEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCC-----CeEEEEEcCCCCEEEEEcCCCeEEEE
Q 010871 267 RVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDS-----EVTSMDHDHTGQLLFCGDAQGCIYSI 341 (498)
Q Consensus 267 ~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~i~~l~~~~~~~~l~~~~~dg~i~i~ 341 (498)
..+.+...|.+++|+|+ +..|++++.||.|++||... ++..+.|.. .+.+++|+|+|++|++|+.||.|++|
T Consensus 80 ~~~~~~~~V~~vawSPd-G~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPI-DDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp STTSCSCCEEEEEECSS-SSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred eecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 23334567999999995 57889999999999999644 555555433 49999999999999999999999999
Q ss_pred EccCCcccc-----cccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCc
Q 010871 342 SMESHSGAL-----SRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPR 416 (498)
Q Consensus 342 d~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 416 (498)
|+....... ..... ....+|...|.+++|+ |+| +++++.|+.|++||+..+............+...
T Consensus 157 d~~~~~l~~~~~i~l~ti~-~~~~gh~~~V~sVawS-----Pdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIR-LSDAGSKDWVTHIVWY-----EDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEE-CSCTTCCCCEEEEEEE-----TTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred ECCCCccccccceeeeeee-cccccccccEEEEEEc-----CCc--EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence 987643100 01110 1125678899999887 888 8899999999999997653210000010111222
Q ss_pred eeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEE--cCCCCEEEEEeCCCeEEEeec
Q 010871 417 VHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAW--NHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
+..+ .|+ |++||+++ ++.|++||+.++. ......+|...|.+++| +|++..|++++.||+ ++|.+
T Consensus 229 V~sv--aFs-------g~~LASa~-~~tIkLWd~~~~~--~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 229 ITDL--KIV-------DYKVVLTC-PGYVHKIDLKNYS--ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp CCCE--EEE-------TTEEEEEC-SSEEEEEETTTTE--EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred EEEE--EEE-------CCEEEEEe-CCeEEEEECCCCe--EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 3222 332 58888887 6999999999854 22223389999999999 999999999999999 99987
Q ss_pred C
Q 010871 495 A 495 (498)
Q Consensus 495 ~ 495 (498)
+
T Consensus 296 d 296 (588)
T 2j04_A 296 D 296 (588)
T ss_dssp S
T ss_pred c
Confidence 4
No 108
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=242.92 Aligned_cols=269 Identities=12% Similarity=0.059 Sum_probs=201.6
Q ss_pred EecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC---------CCcE
Q 010871 195 FGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT---------KGDC 265 (498)
Q Consensus 195 ~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~---------~~~~ 265 (498)
+.+ ++.+|++|+.||.|++||+.+ ++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.
T Consensus 44 ~~~-d~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 44 MYY-DKWVCMCRCEDGALHFTQLKD-SKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSE-EEEEEEEEEETTEEEEEEESS-SSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hcC-CCCEEEEECCCCcEEEEECCC-CcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 344 678999999999999999998 66666665 567888999988 9999999999999655 5555
Q ss_pred EEEEe-cC-CCeEEEEEEc--CCCcEEEEEeCCCcEEEEEcCCCcEEEEe--ecCCCeEEEEEcCCCCEEEEEcCCCeEE
Q 010871 266 IRVIY-GV-SSQLCIRFHP--VNNNFLSVGNANKEITVFNFSTGRIIKKL--VVDSEVTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 266 ~~~~~-~~-~~v~~i~~~~--~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
+..+. .| ..+.+++|+| ++ .++++|+.||.|++||+++++.+... .+...+.+++|+|++.+|++|+.||.|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 65555 23 4689999999 54 78999999999999999999987665 3456799999999999999999999999
Q ss_pred EEEccCCcccccccccccccCC-CccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCcee
Q 010871 340 SISMESHSGALSRSHRHRTTGK-RKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVH 418 (498)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
+||++....... .+.. |..+|.++.|+ |++.+|++++ |+.|++||++........ .........+.
T Consensus 196 iwd~~~~~~~~~------~~~~~h~~~v~~l~fs-----~~g~~l~s~~-~~~v~iwd~~~~~~~~~~-~~~~~~~~~~~ 262 (343)
T 3lrv_A 196 VYNLSSPDQASS------RFPVDEEAKIKEVKFA-----DNGYWMVVEC-DQTVVCFDLRKDVGTLAY-PTYTIPEFKTG 262 (343)
T ss_dssp EEESSCTTSCCE------ECCCCTTSCEEEEEEC-----TTSSEEEEEE-SSBEEEEETTSSTTCBSS-CCCBC-----C
T ss_pred EEECCCCCCCcc------EEeccCCCCEEEEEEe-----CCCCEEEEEe-CCeEEEEEcCCCCcceee-ccccccccccc
Confidence 999976543211 1234 88999999887 9999999999 559999999865321110 00000001111
Q ss_pred eeEEEEeeeeeccCCCEEEEEeC-CCcEEEEECCCCCccceeeecCCCCCeEEEEEcC---CCCEEEEEeCCCeEEEeec
Q 010871 419 SIRASFCPLLSLEKGEYIVAGSE-DSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH---GENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~gs~-dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp---~~~~l~s~~~Dg~i~iW~~ 494 (498)
...++|+| +|++|++++. |+.|++|++..... .... .++..++|.+ +...|++++.||.+.++-.
T Consensus 263 ~~~~~~~~-----~g~~l~~~s~~d~~i~v~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 263 TVTYDIDD-----SGKNMIAYSNESNSLTIYKFDKKTK--NWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp CEEEEECT-----TSSEEEEEETTTTEEEEEEECTTTC--SEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred ceEEEECC-----CCCEEEEecCCCCcEEEEEEccccc--ceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 12245555 9999999998 99999999976432 1121 5677888888 8889999999999988754
Q ss_pred C
Q 010871 495 A 495 (498)
Q Consensus 495 ~ 495 (498)
.
T Consensus 332 ~ 332 (343)
T 3lrv_A 332 T 332 (343)
T ss_dssp C
T ss_pred c
Confidence 3
No 109
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.5e-28 Score=239.18 Aligned_cols=287 Identities=14% Similarity=0.181 Sum_probs=191.0
Q ss_pred ecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCC---CEEEEEeCCCcEEEEEC
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN---QYIASSSMDKTVRVWEL 260 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~---~~l~s~s~dg~v~iwd~ 260 (498)
.+|.+.|++++|+|.++.+|++|+.||.|++||+.+ ......+. +...+.++.|++.+ .+|++++.||.|++||+
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT-LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC-Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 469999999999997788999999999999999998 66666665 78899999999854 59999999999999999
Q ss_pred CCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc-EEEEe----------------ecCCCeEEEEE
Q 010871 261 TKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR-IIKKL----------------VVDSEVTSMDH 322 (498)
Q Consensus 261 ~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~----------------~~~~~i~~l~~ 322 (498)
.+++.+..+..| ..+.+++|+|++..++++|+.||.|++||++++. .+..+ .+...|.+++|
T Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp SSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred CCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 999999999877 4788999999877789999999999999998765 33332 36788999999
Q ss_pred cCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccccc
Q 010871 323 DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQ 402 (498)
Q Consensus 323 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~ 402 (498)
+|++++|++++.||.|++||+............. .......+..... ...+..+++++.++.|++||+..+..
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~v~d~~~~~~ 326 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV--CNNSKKGLKFTVS-----CGCSSEFVFVPYGSTIAVYTVYSGEQ 326 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC--CCCCSSCCCCEEC-----CSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceeccccc--cccccccceeEEe-----cCCCceEEEEecCCEEEEEECcCCcc
Confidence 9999999999999999999997654332211110 0111111111111 14466788888999999999986422
Q ss_pred ceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcC-CCCEEE
Q 010871 403 GYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH-GENLLA 481 (498)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~ 481 (498)
......+...+.. +.|+| ++++|++|+.||.|++||+.+.+ .+.....+. ....+.+ ....+.
T Consensus 327 ----~~~~~~~~~~v~~--~~~s~-----~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~ 390 (408)
T 4a11_B 327 ----ITMLKGHYKTVDC--CVFQS-----NFQELYSGSRDCNILAWVPSLYE--PVPDDDETT---TKSQLNPAFEDAWS 390 (408)
T ss_dssp ----EEEECCCSSCEEE--EEEET-----TTTEEEEEETTSCEEEEEECC------------------------------
T ss_pred ----eeeeccCCCeEEE--EEEcC-----CCCEEEEECCCCeEEEEeCCCCC--ccCCCCceE---eccccccccceeec
Confidence 1111112223322 35665 99999999999999999999854 333332222 1223333 334556
Q ss_pred EEeCCCeEEEeecC
Q 010871 482 SSDLYGIVIVWKRA 495 (498)
Q Consensus 482 s~~~Dg~i~iW~~~ 495 (498)
+++.|+.+++|+..
T Consensus 391 ~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 391 SSDEEGGTSAWSHP 404 (408)
T ss_dssp --------------
T ss_pred ccCccCceeecCCc
Confidence 77789999999864
No 110
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.3e-28 Score=229.23 Aligned_cols=236 Identities=12% Similarity=0.142 Sum_probs=184.5
Q ss_pred eeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecC-CCCEEEEEeCCCcEEEEEcCCCC-ceeEEeec
Q 010871 152 RTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHM-SSDLLAYGASDGTLTVCTVSDPP-KVIKLLNG 229 (498)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~lasg~~dg~i~iwd~~~~~-~~~~~~~~ 229 (498)
...+....+..+++|....... .....|.+|.+.|++++|+|+ ++.+||+|+.||+|+|||+.++. .....+.+
T Consensus 22 ~~las~s~D~~v~iw~~~~~~~----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~ 97 (297)
T 2pm7_B 22 KRMATCSSDKTIKIFEVEGETH----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV 97 (297)
T ss_dssp SEEEEEETTSCEEEEEBCSSCB----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECC
T ss_pred CEEEEEeCCCEEEEEecCCCCc----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeec
Confidence 3445555666777775542211 123467899999999999863 48899999999999999998732 35677889
Q ss_pred CCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCc--EEEEEecC-CCeEEEEEEcCC------------CcEEEEEe
Q 010871 230 HSKDVTDFDFSSN--NQYIASSSMDKTVRVWELTKGD--CIRVIYGV-SSQLCIRFHPVN------------NNFLSVGN 292 (498)
Q Consensus 230 h~~~V~~l~~s~~--~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~-~~v~~i~~~~~~------------~~~l~~g~ 292 (498)
|...|.+++|+|+ +.+|++++.||+|++||+.++. ....+.+| ..+.+++|+|+. +.+|++|+
T Consensus 98 h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs 177 (297)
T 2pm7_B 98 HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177 (297)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE
T ss_pred CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc
Confidence 9999999999997 8899999999999999998763 23455666 478899999963 46899999
Q ss_pred CCCcEEEEEcCCCc----EEEEe-ecCCCeEEEEEcCCC---CEEEEEcCCCeEEEEEccCCcccccccccccccCCCcc
Q 010871 293 ANKEITVFNFSTGR----IIKKL-VVDSEVTSMDHDHTG---QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKC 364 (498)
Q Consensus 293 ~dg~i~iwd~~~~~----~~~~~-~~~~~i~~l~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 364 (498)
.|++|++||+++++ ....+ .|...|.+++|+|++ .+|++++.|+.|++||++.......... .....|..
T Consensus 178 ~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~--~~~~~~~~ 255 (297)
T 2pm7_B 178 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL--LKEEKFPD 255 (297)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE--SSSSCCSS
T ss_pred CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee--eecccCCC
Confidence 99999999998766 44455 488999999999985 7999999999999999876432211110 00135667
Q ss_pred ceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 365 PVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 365 ~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
.|.++.|+ |++++|++++.|+.|++|+..
T Consensus 256 ~v~~~~~s-----~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 256 VLWRASWS-----LSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEEEC-----SSSCCEEEEETTSCEEEEEEC
T ss_pred cEEEEEEC-----CCCCEEEEEcCCCcEEEEEEC
Confidence 78888776 999999999999999999976
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.7e-27 Score=232.30 Aligned_cols=285 Identities=13% Similarity=0.119 Sum_probs=213.7
Q ss_pred eeecccccEEEEEEecCCCCEE-EEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEE-EeCCCcEEEEE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLL-AYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIAS-SSMDKTVRVWE 259 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~l-asg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~s~dg~v~iwd 259 (498)
.+.+|. .+.+++|+| ++++| ++++.|+.|++||+.+ ++....+..|. .+.+++|+|++++|+. ++.++.|++||
T Consensus 27 ~~~~~~-~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d 102 (391)
T 1l0q_A 27 TIPVGS-NPMGAVISP-DGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID 102 (391)
T ss_dssp EEECSS-SEEEEEECT-TSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EeecCC-CcceEEECC-CCCEEEEECCCCCeEEEEECCC-CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEE
Confidence 345554 589999999 77765 6777999999999987 77777777655 8999999999998764 55679999999
Q ss_pred CCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEE-EEEcCCCeE
Q 010871 260 LTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLL-FCGDAQGCI 338 (498)
Q Consensus 260 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~dg~i 338 (498)
+.+++.+..+..+..+.+++|+|++..++++++.++.|++||+.+++.+..+.....+.+++|+|+++.+ ++++.++.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v 182 (391)
T 1l0q_A 103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI 182 (391)
T ss_dssp TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEE
Confidence 9999999999988899999999977666688888999999999999999988877889999999999877 677889999
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE---cCCcEEEEEccccccceeeEeEeeccCC
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT---QDGNLSFFSVALEIQGYLTFRCSLKLAP 415 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 415 (498)
++||+........ ..+...+.++.|. +++++|++++ .++.|++||+..... ........
T Consensus 183 ~~~d~~~~~~~~~--------~~~~~~~~~~~~~-----~~g~~l~~~~~~~~~~~v~~~d~~~~~~-----~~~~~~~~ 244 (391)
T 1l0q_A 183 SVIDTVTNSVIDT--------VKVEAAPSGIAVN-----PEGTKAYVTNVDKYFNTVSMIDTGTNKI-----TARIPVGP 244 (391)
T ss_dssp EEEETTTTEEEEE--------EECSSEEEEEEEC-----TTSSEEEEEEECSSCCEEEEEETTTTEE-----EEEEECCS
T ss_pred EEEECCCCeEEEE--------EecCCCccceEEC-----CCCCEEEEEecCcCCCcEEEEECCCCeE-----EEEEecCC
Confidence 9999875432211 1223445555554 9999999888 689999999975421 11111111
Q ss_pred ceeeeEEEEeeeeeccCCCEE-EEEeCCCcEEEEECCCCCccceeeecCCCCCeE---EEE------------EcCCC--
Q 010871 416 RVHSIRASFCPLLSLEKGEYI-VAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVV---AVA------------WNHGE-- 477 (498)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l-~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~---~l~------------~sp~~-- 477 (498)
......|+| ++++| ++++.|+.|++||+.+++ .+..+..|..+.. .+. |+.+.
T Consensus 245 --~~~~~~~s~-----dg~~l~~s~~~d~~v~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~ 315 (391)
T 1l0q_A 245 --DPAGIAVTP-----DGKKVYVALSFXNTVSVIDTATNT--ITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITS 315 (391)
T ss_dssp --SEEEEEECT-----TSSEEEEEETTTTEEEEEETTTTE--EEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCS
T ss_pred --CccEEEEcc-----CCCEEEEEcCCCCEEEEEECCCCc--EEEEEECCcCCCccceeeeccccccccccccccccccc
Confidence 223335555 89877 666889999999999854 4556655543321 122 22111
Q ss_pred --------CEEEEEeCCCeEEEeecCCC
Q 010871 478 --------NLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 478 --------~~l~s~~~Dg~i~iW~~~~~ 497 (498)
-.+...+.|..+++|++..+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~W~~~~g 343 (391)
T 1l0q_A 316 GYIFLSEPVQFTDLSKDATEWKWDFGDG 343 (391)
T ss_dssp SEEETTCCEEEEECCBSCSEEEEECSSS
T ss_pred ccccccceEEEEeCCCCceEEEEECCCC
Confidence 34666677899999999765
No 112
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=4.6e-28 Score=233.92 Aligned_cols=249 Identities=11% Similarity=0.128 Sum_probs=187.2
Q ss_pred eeecccccEEEEEEecCCCCEEEEEe-----------CCCcEEEEEcCCCCceeEEe--------ecCCCCeEEEEEccC
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGA-----------SDGTLTVCTVSDPPKVIKLL--------NGHSKDVTDFDFSSN 242 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~-----------~dg~i~iwd~~~~~~~~~~~--------~~h~~~V~~l~~s~~ 242 (498)
.|.+|...|.+++++. +.+++|+ .|+.+++|++.......... ..+...+.+++|+||
T Consensus 68 ~l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp ECCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 5788999999998854 5666654 57889999987643333222 124456899999999
Q ss_pred CCEEEEE--eCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe---ecCCCe
Q 010871 243 NQYIASS--SMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL---VVDSEV 317 (498)
Q Consensus 243 ~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~i 317 (498)
|++|+++ +.|++|+|||+.+++++..+.++..|.+++|+|++ .++++++ ++.+.+|+..+++.+... .+...|
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg-~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDG-KVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTS-SEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCC-ceEEecc-ceeEEEEEeccCcceeeeecCCCCCCE
Confidence 9988754 47899999999999999999988899999999954 7888876 556778888787766543 367789
Q ss_pred EEEEEcCCCCEEEEEcCCC----eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEE
Q 010871 318 TSMDHDHTGQLLFCGDAQG----CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLS 393 (498)
Q Consensus 318 ~~l~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~ 393 (498)
.+++|+|++..+++++.++ .++.|++.......... .....|...|+++.|+ |+|++|++|+.|+.|+
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~V~~~~~S-----pdg~~lasgs~D~~V~ 294 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS---KQVTNRFKGITSMDVD-----MKGELAVLASNDNSIA 294 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE---EEEESSCSCEEEEEEC-----TTSCEEEEEETTSCEE
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee---eeecCCCCCeEeEEEC-----CCCCceEEEcCCCEEE
Confidence 9999999999999998877 67888876544332221 2235778889888876 9999999999999999
Q ss_pred EEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCC
Q 010871 394 FFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 394 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
|||+.+... .......+...+. .++|+| ||++||+|+.|++|+|||+...
T Consensus 295 iwd~~~~~~---~~~~~~gH~~~V~--~v~fSp-----dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 295 LVKLKDLSM---SKIFKQAHSFAIT--EVTISP-----DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEETTTTEE---EEEETTSSSSCEE--EEEECT-----TSCEEEEEETTSEEEEEECCTT
T ss_pred EEECCCCcE---EEEecCcccCCEE--EEEECC-----CCCEEEEEeCCCeEEEEEcCCC
Confidence 999986421 1111111223333 236665 9999999999999999999653
No 113
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=8.8e-28 Score=236.79 Aligned_cols=279 Identities=12% Similarity=0.163 Sum_probs=200.3
Q ss_pred CCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEE
Q 010871 160 SDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDF 239 (498)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~ 239 (498)
.+.+++|.......... ..+.+|...|+||+|+| ++++||+|+.||.|+|||+.+ ++.+..+.+|...|.++++
T Consensus 124 d~tV~lWd~~tg~~~~~----~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~-~~~~~~~~~h~~~v~~~s~ 197 (420)
T 4gga_A 124 DNSVYLWSASSGDILQL----LQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQ-QKRLRNMTSHSARVGSLSW 197 (420)
T ss_dssp TTEEEEEETTTCCEEEE----EECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEE
T ss_pred CCEEEEEECCCCCEEEE----EEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCC-CcEEEEEeCCCCceEEEee
Confidence 56677776655443322 23567889999999999 999999999999999999998 8889999999999999888
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCC-cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE----E-EEee
Q 010871 240 SSNNQYIASSSMDKTVRVWELTKG-DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI----I-KKLV 312 (498)
Q Consensus 240 s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~----~-~~~~ 312 (498)
+ +.+|++|+.|+.+++||.... ..+..+.+|. .+..+.+.| .+.++++++.|+.|++|+..+++. + ....
T Consensus 198 ~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~ 274 (420)
T 4gga_A 198 N--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274 (420)
T ss_dssp E--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC
T ss_pred C--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecc
Confidence 5 669999999999999998864 5567777775 667888888 557899999999999999987653 2 2235
Q ss_pred cCCCeEEEEEcCCCC-EEEE--EcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE--
Q 010871 313 VDSEVTSMDHDHTGQ-LLFC--GDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-- 387 (498)
Q Consensus 313 ~~~~i~~l~~~~~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-- 387 (498)
+...|.+++|+|.+. ++++ |+.|+.|++||+........ ..+...+.++.|. ++++.+++++
T Consensus 275 ~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~--------~~~~~~v~~~~~~-----~~~~~lv~~sg~ 341 (420)
T 4gga_A 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA--------VDAHSQVCSILWS-----PHYKELISGHGF 341 (420)
T ss_dssp CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE--------EECSSCEEEEEEE-----TTTTEEEEEECT
T ss_pred cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee--------eccccceeeeeec-----CCCCeEEEEEec
Confidence 788999999999765 5544 46799999999875443221 1223456666665 8999988876
Q ss_pred cCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCC
Q 010871 388 QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFP 467 (498)
Q Consensus 388 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~ 467 (498)
.|+.|++||+.+... ......+...+. .++|+| +|.+|++|+.|++|+|||+.... +......+...
T Consensus 342 ~d~~I~iwd~~~~~~----v~~l~gH~~~V~--~l~~sp-----dg~~l~S~s~D~tvriWdv~~~~--~~~~~~~~~~~ 408 (420)
T 4gga_A 342 AQNQLVIWKYPTMAK----VAELKGHTSRVL--SLTMSP-----DGATVASAAADETLRLWRCFELD--PARRREREKAS 408 (420)
T ss_dssp TTCCEEEEETTTCCE----EEEECCCSSCEE--EEEECT-----TSSCEEEEETTTEEEEECCSCSS--CC---------
T ss_pred CCCEEEEEECCCCcE----EEEEcCCCCCEE--EEEEcC-----CCCEEEEEecCCeEEEEECCCCC--ccchhhhccCC
Confidence 789999999986422 111111222232 235555 99999999999999999998733 34444445444
Q ss_pred eEEEEE
Q 010871 468 VVAVAW 473 (498)
Q Consensus 468 V~~l~~ 473 (498)
+....|
T Consensus 409 ~~~~s~ 414 (420)
T 4gga_A 409 AAKSSL 414 (420)
T ss_dssp ------
T ss_pred cccccc
Confidence 443333
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=5.3e-28 Score=232.67 Aligned_cols=253 Identities=12% Similarity=0.102 Sum_probs=175.5
Q ss_pred EEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeC
Q 010871 214 VCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNA 293 (498)
Q Consensus 214 iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~ 293 (498)
||++.+ ...+..+.+|...|.+++|+|+|++|++|+.++ +++|++.+++.+.....+ .+..+.+.+.+..++++|+.
T Consensus 3 i~s~~~-~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMIT-RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSS
T ss_pred cccccc-cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECC
Confidence 455555 556667788999999999999999999998775 789999988776655433 46677888866666678888
Q ss_pred CCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeE
Q 010871 294 NKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRS 373 (498)
Q Consensus 294 dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 373 (498)
|++|++||+.+++.+..+.+...|.+++++++. ++++ .++.|++||+........ .. .. +...+.
T Consensus 80 d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~-~~-----~~---~~~~~~--- 144 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRIT-DD-----IR---FGGVCE--- 144 (355)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSS-CC-----EE---EEEEEE---
T ss_pred ccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeE-Ee-----cc---CCceEE---
Confidence 999999999999999999999999999998764 3333 478999999875411111 00 11 222222
Q ss_pred eeEcCCCcEEEE--EEcCCcEEEEEcccccccee-----------e-EeEeeccCCceeeeEEEEeeeeeccCCCEEEEE
Q 010871 374 FSLLAGGPVLLT--CTQDGNLSFFSVALEIQGYL-----------T-FRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAG 439 (498)
Q Consensus 374 ~~~s~~~~~l~t--~s~dg~i~iwd~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 439 (498)
+++ .++++ |+.||.|++||+........ . ......+...+.. +.|+| +|++|++|
T Consensus 145 --~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~--~~~s~-----~g~~l~s~ 213 (355)
T 3vu4_A 145 --FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKM--VRLNR-----KSDMVATC 213 (355)
T ss_dssp --EET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEE--EEECT-----TSSEEEEE
T ss_pred --EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEE--EEECC-----CCCEEEEE
Confidence 225 55665 57899999999986431000 0 1111112222222 24554 99999999
Q ss_pred eCCCc-EEEEECCCCCccceeeec-C-CCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 440 SEDSN-VYFYDLAKPKHSCVNKLQ-G-HRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 440 s~dg~-I~iwd~~~~~~~~~~~~~-~-h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
+.|++ |++||+.+++ ++..+. + |...|++++|+|++++|++++.||+|+||+++.+
T Consensus 214 s~d~~~v~iwd~~~~~--~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDGV--LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp ETTCSEEEEEETTTCC--EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred eCCCCEEEEEECCCCc--EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 99998 9999999854 677887 5 9999999999999999999999999999998753
No 115
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=1.6e-27 Score=236.18 Aligned_cols=261 Identities=18% Similarity=0.335 Sum_probs=200.4
Q ss_pred eeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCC
Q 010871 154 SFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKD 233 (498)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~ 233 (498)
.+....++.+++|...... ....+.+|.+.|++++| ++++|++|+.||.|++||+.+ ++....+.+|...
T Consensus 146 l~~g~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~ 215 (435)
T 1p22_A 146 IVSGLRDNTIKIWDKNTLE------CKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNT-GEMLNTLIHHCEA 215 (435)
T ss_dssp EEEEESSSCEEEEESSSCC------EEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSS-CCEEEEECCCCSC
T ss_pred EEEEeCCCeEEEEeCCCCe------EEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCc
Confidence 3444556666666543322 23457899999999999 568999999999999999998 7888999999999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE---EEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEE
Q 010871 234 VTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI---RVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIK 309 (498)
Q Consensus 234 V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~---~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 309 (498)
|.+++|++ .+|++|+.||.|++||+.++..+ ..+.+| ..+.++.| ++.++++|+.||.|++||+++++.+.
T Consensus 216 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~ 290 (435)
T 1p22_A 216 VLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVR 290 (435)
T ss_dssp EEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEE
Confidence 99999974 59999999999999999987654 555566 46778888 35789999999999999999999998
Q ss_pred Eee-cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc
Q 010871 310 KLV-VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ 388 (498)
Q Consensus 310 ~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~ 388 (498)
.+. |...|.++++ ++.++++|+.||.|++||++..... .....|...|.++.+ ++.+|++|+.
T Consensus 291 ~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~-------~~~~~h~~~v~~~~~-------~~~~l~sg~~ 354 (435)
T 1p22_A 291 TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL-------RVLEGHEELVRCIRF-------DNKRIVSGAY 354 (435)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE-------EEECCCSSCEEEEEC-------CSSEEEEEET
T ss_pred EEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEE-------EEEeCCcCcEEEEEe-------cCCEEEEEeC
Confidence 885 7889999998 4689999999999999999754322 123568888888875 5899999999
Q ss_pred CCcEEEEEcccccccee-----eEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC
Q 010871 389 DGNLSFFSVALEIQGYL-----TFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 389 dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~ 454 (498)
||.|++||+........ .......+...+..+ .| ++.+|++|+.||.|++||+.+..
T Consensus 355 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~-------~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 355 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--QF-------DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE--EE-------CSSCEEECCSSSEEEEEC-----
T ss_pred CCcEEEEECCCCCCccccccchheeeccCCCCCeEEE--Ee-------CCCEEEEEeCCCEEEEEECCCCC
Confidence 99999999976532110 111222223333332 22 68899999999999999998754
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3.8e-27 Score=217.51 Aligned_cols=256 Identities=14% Similarity=0.133 Sum_probs=173.1
Q ss_pred ccccEEEEEEecCCCC--EEEEEeCCCcEEEEEcCCCC---ceeEEeecCCC-------------------------CeE
Q 010871 186 CKAAVTILKFGHMSSD--LLAYGASDGTLTVCTVSDPP---KVIKLLNGHSK-------------------------DVT 235 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~--~lasg~~dg~i~iwd~~~~~---~~~~~~~~h~~-------------------------~V~ 235 (498)
+.-.|.++-|-..+.+ .+++++ ...|++|+..+ . +.++++++|.. .|.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 115 (356)
T 2w18_A 38 CSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALD-AWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIR 115 (356)
T ss_dssp CEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESS-SSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEE
T ss_pred eEEEEeeeeeccCCCCccEEEEec-cceEEEcccCC-CccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceE
Confidence 3345677777552332 566666 46799999998 5 67788888775 455
Q ss_pred EEEEccC----CCEEEEEeC--------------------CCcEEEEEC-CCCcEEEEEecCC-CeEEEEEEc--CCCcE
Q 010871 236 DFDFSSN----NQYIASSSM--------------------DKTVRVWEL-TKGDCIRVIYGVS-SQLCIRFHP--VNNNF 287 (498)
Q Consensus 236 ~l~~s~~----~~~l~s~s~--------------------dg~v~iwd~-~~~~~~~~~~~~~-~v~~i~~~~--~~~~~ 287 (498)
+|+|+|+ ++.+++++. |+.|++|++ .+|+.+..+..|. .+..++|++ .++.+
T Consensus 116 sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~ 195 (356)
T 2w18_A 116 ALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEA 195 (356)
T ss_dssp EECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTE
T ss_pred EEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCce
Confidence 6667777 777777553 888999998 4577777777775 455556665 45689
Q ss_pred EEEEeCCCcEEEEEcCCCcEEEEee-c---CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCc
Q 010871 288 LSVGNANKEITVFNFSTGRIIKKLV-V---DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRK 363 (498)
Q Consensus 288 l~~g~~dg~i~iwd~~~~~~~~~~~-~---~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 363 (498)
|++|+.|++|+|||+.+++++.++. + ...+.+++|+|+|.++++++.+.. +|
T Consensus 196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w---------------------- 251 (356)
T 2w18_A 196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KE---------------------- 251 (356)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------------------------
T ss_pred EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC--cc----------------------
Confidence 9999999999999999999999985 3 346788899999998887764321 11
Q ss_pred cceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC
Q 010871 364 CPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS 443 (498)
Q Consensus 364 ~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg 443 (498)
.+++|+.|++|++||..++..... .............+ ..+. ++.++++|+.|+
T Consensus 252 ------------------~laSGs~D~tIklWd~~tgk~l~v-~~~~~p~Gh~~~~l--sg~~-----sg~~lASgS~Dg 305 (356)
T 2w18_A 252 ------------------SESLRSPVFQLIVINPKTTLSVGV-MLYCLPPGQAGRFL--EGDV-----KDHCAAAILTSG 305 (356)
T ss_dssp ------------------------CCEEEEEEETTTTEEEEE-EEECCCTTCCCCEE--EEEE-----ETTEEEEEETTS
T ss_pred ------------------eeeccCCCcEEEEEECCCCEEEEE-EEeeccCCCcceeE--cccc-----CCCEEEEEcCCC
Confidence 367888999999999875532110 00000001111111 1111 477899999999
Q ss_pred cEEEEECCCCCccceeeecCCCCCeE-EEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 444 NVYFYDLAKPKHSCVNKLQGHRFPVV-AVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 444 ~I~iwd~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+|+|||+.+++ ++.++.+|...+. .++|+|||++|++|+.|++|+|||+.
T Consensus 306 TIkIWDl~tGk--~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 306 TIAIWDLLLGQ--CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp CEEEEETTTCS--EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred cEEEEECCCCc--EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 99999999954 7889999987655 58999999999999999999999963
No 117
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.8e-27 Score=225.76 Aligned_cols=235 Identities=14% Similarity=0.159 Sum_probs=186.2
Q ss_pred eeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCC--CCEEEEEeCCCcEEEEEcCCCCc--eeEEee
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMS--SDLLAYGASDGTLTVCTVSDPPK--VIKLLN 228 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~lasg~~dg~i~iwd~~~~~~--~~~~~~ 228 (498)
..+.....+.+++|....... .....+.+|.+.|++++|++ + +.+|++|+.||.|+|||+.+ +. ....+.
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~ 98 (379)
T 3jrp_A 25 RLATCSSDKTIKIFEVEGETH----KLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHA 98 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEE----EEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEEEET-TEEEEEEEEC
T ss_pred EEEEEECCCcEEEEecCCCcc----eeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEEcCC-CceeEeeeec
Confidence 334444555666665432111 12346789999999999997 5 89999999999999999987 44 677788
Q ss_pred cCCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCc--EEEEEecC-CCeEEEEEEcC------------CCcEEEEE
Q 010871 229 GHSKDVTDFDFSSN--NQYIASSSMDKTVRVWELTKGD--CIRVIYGV-SSQLCIRFHPV------------NNNFLSVG 291 (498)
Q Consensus 229 ~h~~~V~~l~~s~~--~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~-~~v~~i~~~~~------------~~~~l~~g 291 (498)
+|...|.+++|+|+ +.+|++++.||.|++||+.++. ....+..| ..+.+++|+|. ++.++++|
T Consensus 99 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (379)
T 3jrp_A 99 VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178 (379)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence 89999999999999 9999999999999999999873 33445555 57899999995 46899999
Q ss_pred eCCCcEEEEEcCCCcE----EEEe-ecCCCeEEEEEcCC---CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCc
Q 010871 292 NANKEITVFNFSTGRI----IKKL-VVDSEVTSMDHDHT---GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRK 363 (498)
Q Consensus 292 ~~dg~i~iwd~~~~~~----~~~~-~~~~~i~~l~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 363 (498)
+.||.|++||++++.. +..+ .|...|.+++|+|+ +.+|++++.||.|++||++.......... .....|.
T Consensus 179 ~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~ 256 (379)
T 3jrp_A 179 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL--LKEEKFP 256 (379)
T ss_dssp ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE--SSSSCCS
T ss_pred eCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeee--eccccCC
Confidence 9999999999987653 3333 47889999999999 89999999999999999986543222111 1124577
Q ss_pred cceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 364 CPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 364 ~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
..|.++.|+ |++++|++++.||.|++|++...
T Consensus 257 ~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 257 DVLWRASWS-----LSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SCEEEEEEC-----SSSCCEEEEESSSSEEEEEEEET
T ss_pred CcEEEEEEc-----CCCCEEEEecCCCcEEEEeCCCC
Confidence 788888877 99999999999999999999853
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-26 Score=229.30 Aligned_cols=241 Identities=10% Similarity=0.121 Sum_probs=188.2
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc---EEEEEecCC-----------------------------------
Q 010871 232 KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD---CIRVIYGVS----------------------------------- 273 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~----------------------------------- 273 (498)
.++.+++|+++|++|+++ .++.|++||+.+|+ .+..+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999966665 57899999999998 666655321
Q ss_pred --------------------CeEEEEEEcCCCcEEEEEeCCCcEEEEEcC--CCcEEEEe---ecCCCeEEEEEcCCCCE
Q 010871 274 --------------------SQLCIRFHPVNNNFLSVGNANKEITVFNFS--TGRIIKKL---VVDSEVTSMDHDHTGQL 328 (498)
Q Consensus 274 --------------------~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~---~~~~~i~~l~~~~~~~~ 328 (498)
.+.+++|+|++..++++|+.||.|++||+. +++.+..+ .+...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 488999999765556899999999999999 88887777 46788999999999999
Q ss_pred EEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCC---CcEEEEEEcCCcEEEEEcccccccee
Q 010871 329 LFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG---GPVLLTCTQDGNLSFFSVALEIQGYL 405 (498)
Q Consensus 329 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~---~~~l~t~s~dg~i~iwd~~~~~~~~~ 405 (498)
|++|+.+|.|++|++........ ......+|...|.++.|+ |+ +++|++++.|+.|++||+..+..
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~s-----p~~~~~~~l~s~~~d~~i~vwd~~~~~~--- 232 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKF---TQEPILGHVSMLTDVHLI-----KDSDGHQFIITSDRDEHIKISHYPQCFI--- 232 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSC---CCCCSEECSSCEEEEEEE-----ECTTSCEEEEEEETTSCEEEEEESCTTC---
T ss_pred EEEEeCCCcEEEEecCCcccccc---cceeeecccCceEEEEEc-----CCCCCCcEEEEEcCCCcEEEEECCCCce---
Confidence 99999999999999865443210 111235678889998887 88 99999999999999999975422
Q ss_pred eEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec-----------------------
Q 010871 406 TFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ----------------------- 462 (498)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~----------------------- 462 (498)
.......+.. ....+.++ ++++|++|+.|+.|++||+.+++ ++..+.
T Consensus 233 ~~~~~~~h~~-------~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (450)
T 2vdu_B 233 VDKWLFGHKH-------FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK--NLSTFDYNSLIKPYLNDQHLAPPRFQNEN 302 (450)
T ss_dssp EEEECCCCSS-------CEEEEEEC-STTEEEEEESSSEEEEEETTTCC--EEEEEECHHHHGGGCCTTSBC--------
T ss_pred eeeeecCCCC-------ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc--Eeeeecchhhhhhhhhhcccccccccccc
Confidence 1111111222 22334455 89999999999999999999865 444444
Q ss_pred --CCCCCeEEEEEcCCCCEEEEEe-CCCeEEEeec
Q 010871 463 --GHRFPVVAVAWNHGENLLASSD-LYGIVIVWKR 494 (498)
Q Consensus 463 --~h~~~V~~l~~sp~~~~l~s~~-~Dg~i~iW~~ 494 (498)
.+...|.+++|+|++++|++++ .|+.|+||++
T Consensus 303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 2345799999999999999998 8999999999
No 119
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=1.2e-25 Score=212.34 Aligned_cols=260 Identities=13% Similarity=0.162 Sum_probs=197.2
Q ss_pred CCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEE
Q 010871 160 SDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDF 239 (498)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~ 239 (498)
++.+++|........... .+.+|...|++|+|+| ++++||+|+.||+|+||++.+ ++.+..+.+|...+.++.+
T Consensus 44 D~tV~iWd~~tg~~~~~~----~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~-~~~~~~~~~h~~~~~~~~~ 117 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLL----QMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQ-QKRLRNMTSHSARVGSLSW 117 (318)
T ss_dssp TTEEEEEETTTCCEEEEE----ECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEE
T ss_pred CCEEEEEECCCCCEEEEE----EecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCC-ceeEEEecCccceEEEeec
Confidence 566777766554333221 3467899999999999 999999999999999999998 8889999999999887665
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCC-cEEEEEecCC-CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEE-----EEee
Q 010871 240 SSNNQYIASSSMDKTVRVWELTKG-DCIRVIYGVS-SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRII-----KKLV 312 (498)
Q Consensus 240 s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~-~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-----~~~~ 312 (498)
++..|++++.++.+++|+...+ ..+..+.+|. .+..+.+.+ .+.++++++.||.|++||+++++.. ....
T Consensus 118 --~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 194 (318)
T 4ggc_A 118 --NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194 (318)
T ss_dssp --ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred --CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence 4679999999999999999876 4556677764 667888888 4578999999999999999887532 2224
Q ss_pred cCCCeEEEEEcCCCCE---EEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE--
Q 010871 313 VDSEVTSMDHDHTGQL---LFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-- 387 (498)
Q Consensus 313 ~~~~i~~l~~~~~~~~---l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-- 387 (498)
+...|.++++++.+.. +++++.++.|++|+......... ..+...+..+.+. +.+..+++++
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~--------~~~~~~v~~~~~~-----~~~~~~~~~sg~ 261 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA--------VDAHSQVCSILWS-----PHYKELISGHGF 261 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE--------EECSSCEEEEEEE-----TTTTEEEEEECT
T ss_pred cCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc--------ccceeeeeeeeec-----ccccceEEEEEc
Confidence 6788999999998763 34677899999999865443221 3344556666665 8888888765
Q ss_pred cCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 388 QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 388 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
.|+.|++||+.++.. ......+...+.. ++|+| +|++|++|+.||+|+|||+.+
T Consensus 262 ~d~~i~iwd~~~~~~----~~~l~gH~~~V~~--l~~sp-----dg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAK----VAELKGHTSRVLS--LTMSP-----DGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TTCCEEEEETTTCCE----EEEECCCSSCEEE--EEECT-----TSSCEEEEETTTEEEEECCSC
T ss_pred CCCEEEEEECCCCcE----EEEEcCCCCCEEE--EEEcC-----CCCEEEEEecCCeEEEEECCC
Confidence 799999999986522 1111112233332 25555 999999999999999999976
No 120
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=3.8e-26 Score=218.25 Aligned_cols=277 Identities=12% Similarity=0.138 Sum_probs=183.0
Q ss_pred eeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecC-CCCEEEEEeCCCcEEEEEcCCCC--------ce
Q 010871 153 TSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHM-SSDLLAYGASDGTLTVCTVSDPP--------KV 223 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~lasg~~dg~i~iwd~~~~~--------~~ 223 (498)
..+....++.+++|........ ......+.+|.+.|++++|+|. ++.+|++|+.||.|+|||+.... ..
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 102 (351)
T 3f3f_A 25 HVATCSSDQHIKVFKLDKDTSN--WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNK 102 (351)
T ss_dssp EEEEEETTSEEEEEEECSSSCC--EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEE
T ss_pred EEEEeeCCCeEEEEECCCCCCc--ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcce
Confidence 3444455556666655432211 1124567899999999999984 48999999999999999998732 55
Q ss_pred eEEeecCCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCcEEEEEe--------------cCCCeEEEEEEcC--CC
Q 010871 224 IKLLNGHSKDVTDFDFSSN--NQYIASSSMDKTVRVWELTKGDCIRVIY--------------GVSSQLCIRFHPV--NN 285 (498)
Q Consensus 224 ~~~~~~h~~~V~~l~~s~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~--------------~~~~v~~i~~~~~--~~ 285 (498)
...+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+. ....+.++.|+|+ ++
T Consensus 103 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 182 (351)
T 3f3f_A 103 LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP 182 (351)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC
T ss_pred eeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCC
Confidence 7788899999999999999 9999999999999999999876443322 2246789999996 46
Q ss_pred cEEEEEeCCCcEEEEEcCCCcE--EEEe-ecCCCeEEEEEcCCC----CEEEEEcCCCeEEEEEccCCcccccccccccc
Q 010871 286 NFLSVGNANKEITVFNFSTGRI--IKKL-VVDSEVTSMDHDHTG----QLLFCGDAQGCIYSISMESHSGALSRSHRHRT 358 (498)
Q Consensus 286 ~~l~~g~~dg~i~iwd~~~~~~--~~~~-~~~~~i~~l~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 358 (498)
.++++++.++.+.+|+...++. +..+ .|...|.+++|+|++ ++|++|+.||.|++||++.........
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----- 257 (351)
T 3f3f_A 183 EKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE----- 257 (351)
T ss_dssp CEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------
T ss_pred cEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccC-----
Confidence 8999999999998888887765 4444 478899999999998 899999999999999997543322111
Q ss_pred cCCCccceeeEEEeEeeEcCCCcEEEEE----EcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCC
Q 010871 359 TGKRKCPVTTVQYRSFSLLAGGPVLLTC----TQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGE 434 (498)
Q Consensus 359 ~~~~~~~i~~~~~~~~~~s~~~~~l~t~----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (498)
.....+...... +....+..+ .....+.+|+.... ........+...+. .+.|+| +++
T Consensus 258 --~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~--~~~~s~-----~~~ 319 (351)
T 3f3f_A 258 --ESLTNSNMFDNS-----ADVDMDAQGRSDSNTEEKAELQSNLQV----ELLSEHDDHNGEVW--SVSWNL-----TGT 319 (351)
T ss_dssp ----------------------------------------CCSEEE----EEEEEECTTSSCEE--EEEECS-----SSC
T ss_pred --CcccceeccCCC-----cccccccccccccccceeeeecccccc----cEEEEEecccccEE--EEEEcC-----CCC
Confidence 111111111111 222222222 23334444443311 11111111222222 235665 999
Q ss_pred EEEEEeCCCcEEEEECCCCC
Q 010871 435 YIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 435 ~l~~gs~dg~I~iwd~~~~~ 454 (498)
+|++|+.||.|++|++.+++
T Consensus 320 ~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 320 ILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp CEEEEETTSCEEEEEECTTS
T ss_pred EEEEecCCCcEEEEecCcCc
Confidence 99999999999999999753
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.1e-27 Score=224.81 Aligned_cols=232 Identities=14% Similarity=0.179 Sum_probs=171.9
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC---------CCcEE
Q 010871 238 DFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS---------TGRII 308 (498)
Q Consensus 238 ~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~---------~~~~~ 308 (498)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...+.++.|+|. +++++.|++|++|+.. +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344678899999999999999999999888877 345667778874 8899999999999665 55545
Q ss_pred EEe--ecCCCeEEEEEcC--CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEE
Q 010871 309 KKL--VVDSEVTSMDHDH--TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLL 384 (498)
Q Consensus 309 ~~~--~~~~~i~~l~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~ 384 (498)
..+ .+...|.+++|+| ++++|++++.||.|++||++........ ...+...+.++.|+ |++.+|+
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~------~~~~~~~i~~~~~~-----pdg~~la 186 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH------SAKSDVEYSSGVLH-----KDSLLLA 186 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE------CCCSSCCCCEEEEC-----TTSCEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE------ecCCCCceEEEEEC-----CCCCEEE
Confidence 555 3557899999999 9999999999999999999765432111 13345567777776 9999999
Q ss_pred EEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec--
Q 010871 385 TCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ-- 462 (498)
Q Consensus 385 t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~-- 462 (498)
+|+.||.|++||++.+......+ ...+...+. .+.|+| ++.+|++++ |+.|++||+++.+ .+..+.
T Consensus 187 sg~~dg~i~iwd~~~~~~~~~~~--~~~h~~~v~--~l~fs~-----~g~~l~s~~-~~~v~iwd~~~~~--~~~~~~~~ 254 (343)
T 3lrv_A 187 LYSPDGILDVYNLSSPDQASSRF--PVDEEAKIK--EVKFAD-----NGYWMVVEC-DQTVVCFDLRKDV--GTLAYPTY 254 (343)
T ss_dssp EECTTSCEEEEESSCTTSCCEEC--CCCTTSCEE--EEEECT-----TSSEEEEEE-SSBEEEEETTSST--TCBSSCCC
T ss_pred EEcCCCEEEEEECCCCCCCccEE--eccCCCCEE--EEEEeC-----CCCEEEEEe-CCeEEEEEcCCCC--cceeeccc
Confidence 99999999999998764321111 111233333 235555 999999999 5599999999854 333333
Q ss_pred -CCCCCeE--EEEEcCCCCEEEEEeC-CCeEEEeecCCC
Q 010871 463 -GHRFPVV--AVAWNHGENLLASSDL-YGIVIVWKRAKT 497 (498)
Q Consensus 463 -~h~~~V~--~l~~sp~~~~l~s~~~-Dg~i~iW~~~~~ 497 (498)
.|...+. +++|+|++++|++++. |+.|+||++++.
T Consensus 255 ~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 255 TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 3444444 6999999999999998 999999998653
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-26 Score=244.85 Aligned_cols=234 Identities=14% Similarity=0.165 Sum_probs=186.4
Q ss_pred eeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCC--CCEEEEEeCCCcEEEEEcCCCCc--eeEEeec
Q 010871 154 SFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMS--SDLLAYGASDGTLTVCTVSDPPK--VIKLLNG 229 (498)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~lasg~~dg~i~iwd~~~~~~--~~~~~~~ 229 (498)
.+....++.+++|...... ......+.+|.++|++++|+| + +.+|++|+.||.|++||+.+ +. ....+.+
T Consensus 24 latg~~dg~I~vwd~~~~~----~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~~-~~~~~~~~~~~ 97 (753)
T 3jro_A 24 LATCSSDKTIKIFEVEGET----HKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAV 97 (753)
T ss_dssp EEEEETTTEEEEEEEETTE----EEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEET-TEEEEEEEECC
T ss_pred EEEEECCCcEEEEecCCCC----CccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECCC-CcccccccccC
Confidence 3344445555655433211 112346789999999999998 5 89999999999999999987 44 6777889
Q ss_pred CCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCc--EEEEEecC-CCeEEEEEEcC------------CCcEEEEEe
Q 010871 230 HSKDVTDFDFSSN--NQYIASSSMDKTVRVWELTKGD--CIRVIYGV-SSQLCIRFHPV------------NNNFLSVGN 292 (498)
Q Consensus 230 h~~~V~~l~~s~~--~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~-~~v~~i~~~~~------------~~~~l~~g~ 292 (498)
|...|.+++|+|+ +.+|++|+.||.|++||+.++. ....+..| ..+.++.|+|. ++.++++|+
T Consensus 98 h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs 177 (753)
T 3jro_A 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177 (753)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE
T ss_pred CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE
Confidence 9999999999999 9999999999999999998773 33344454 57889999995 467899999
Q ss_pred CCCcEEEEEcCCCc----EEEEe-ecCCCeEEEEEcCC---CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCcc
Q 010871 293 ANKEITVFNFSTGR----IIKKL-VVDSEVTSMDHDHT---GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKC 364 (498)
Q Consensus 293 ~dg~i~iwd~~~~~----~~~~~-~~~~~i~~l~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 364 (498)
.||.|++||++++. ....+ .|...|.+++|+|+ +.+|++|+.||.|++||+........... .....|..
T Consensus 178 ~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~--~~~~~~~~ 255 (753)
T 3jro_A 178 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL--LKEEKFPD 255 (753)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCB--SSSSCCSS
T ss_pred CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEE--eccCCCCC
Confidence 99999999998873 44444 47889999999999 89999999999999999987543322211 12356778
Q ss_pred ceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 365 PVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 365 ~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
.|.++.|+ |++.+|++++.||.|++|++...
T Consensus 256 ~v~~l~~s-----pdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 256 VLWRASWS-----LSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CCCCEEEC-----TTTCCEEEECSSSCEECCBCCSS
T ss_pred ceEEEEEc-----CCCCEEEEEcCCCEEEEEecCCC
Confidence 88888887 99999999999999999999853
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=1.8e-25 Score=220.90 Aligned_cols=215 Identities=13% Similarity=0.270 Sum_probs=177.2
Q ss_pred eeeeecccccEEEEEEecCCCC-EEEEEeCCCcEEEEEcCCCCc------eeEEeecCCCCeEEEEEcc-CCCEEEEEeC
Q 010871 180 HCIFDQCKAAVTILKFGHMSSD-LLAYGASDGTLTVCTVSDPPK------VIKLLNGHSKDVTDFDFSS-NNQYIASSSM 251 (498)
Q Consensus 180 ~~~~~~h~~~V~~v~~sp~~~~-~lasg~~dg~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~s~-~~~~l~s~s~ 251 (498)
...+.+|.+.|++++|+| ++. +|++|+.||.|+||++..... ....+.+|...|.+++|+| ++.+|++++.
T Consensus 174 ~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~ 252 (430)
T 2xyi_A 174 DLRLRGHQKEGYGLSWNP-NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 252 (430)
T ss_dssp SEEEECCSSCCCCEEECT-TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred cEEecCCCCCeEEEEeCC-CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC
Confidence 346789999999999999 666 999999999999999986321 1466778999999999999 6789999999
Q ss_pred CCcEEEEECCCC---cEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC-CcEEEEe-ecCCCeEEEEEcCC
Q 010871 252 DKTVRVWELTKG---DCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFST-GRIIKKL-VVDSEVTSMDHDHT 325 (498)
Q Consensus 252 dg~v~iwd~~~~---~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~-~~~~~i~~l~~~~~ 325 (498)
||.|++||++++ +.+..+..| ..+.+++|+|++..++++|+.||.|++||+++ ...+..+ .|...|.+++|+|+
T Consensus 253 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332 (430)
T ss_dssp TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSS
T ss_pred CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCC
Confidence 999999999987 566777666 57889999998878999999999999999998 4556666 48899999999999
Q ss_pred CC-EEEEEcCCCeEEEEEccCCcccccc-------cccccccCCCccceeeEEEeEeeEcCCCc-EEEEEEcCCcEEEEE
Q 010871 326 GQ-LLFCGDAQGCIYSISMESHSGALSR-------SHRHRTTGKRKCPVTTVQYRSFSLLAGGP-VLLTCTQDGNLSFFS 396 (498)
Q Consensus 326 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~s~~~~-~l~t~s~dg~i~iwd 396 (498)
+. +|++++.||.|++||+......... ........+|...|.++.|+ |+++ +|++++.||.|++|+
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-----PNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC-----CCCCCEEEEEECCCCEEEeE
Confidence 85 7999999999999999763221100 01112236788889888887 8998 999999999999999
Q ss_pred cccc
Q 010871 397 VALE 400 (498)
Q Consensus 397 ~~~~ 400 (498)
+...
T Consensus 408 ~~~~ 411 (430)
T 2xyi_A 408 MAEN 411 (430)
T ss_dssp ECHH
T ss_pred cccc
Confidence 9753
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=7.8e-25 Score=221.61 Aligned_cols=281 Identities=10% Similarity=0.064 Sum_probs=211.1
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC--CCCcEEEEEec
Q 010871 194 KFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL--TKGDCIRVIYG 271 (498)
Q Consensus 194 ~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~--~~~~~~~~~~~ 271 (498)
+|+| ++.++++++.|++|.+||..+ ++++..+..+.. +.+++|+|+|++|++++.|++|.+||+ .+++++.++..
T Consensus 144 ~~~p-~~~~~vs~~~d~~V~v~D~~t-~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 144 DLDL-PNLFSVTLRDAGQIALVDGDS-KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CCCG-GGEEEEEEGGGTEEEEEETTT-CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred ccCC-CCEEEEEEcCCCeEEEEECCC-ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence 3788 788999999999999999988 788888874333 899999999999999999999999999 89999999998
Q ss_pred CCCeEEEEEEc----CCCcEEEEEeCCCcEEEEEcCCCcEEEEeec------------CCCeEEEEEcCCCC-EEEEEcC
Q 010871 272 VSSQLCIRFHP----VNNNFLSVGNANKEITVFNFSTGRIIKKLVV------------DSEVTSMDHDHTGQ-LLFCGDA 334 (498)
Q Consensus 272 ~~~v~~i~~~~----~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~------------~~~i~~l~~~~~~~-~l~~~~~ 334 (498)
...+..++|+| ++..++++...+++|.+||..+++++..+.. ...+..+.+++++. ++++...
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 78889999999 7755544444689999999999999888743 22689999999776 5567778
Q ss_pred CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccceeeEeEeecc
Q 010871 335 QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYLTFRCSLKL 413 (498)
Q Consensus 335 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~~~ 413 (498)
++.|.+||+.......... ..+...+..+.| +|+|++|++++ .+++|.+||+.++.. ........
T Consensus 301 ~g~i~vvd~~~~~~l~~~~------i~~~~~~~~~~~-----spdg~~l~va~~~~~~v~v~D~~tg~l---~~~i~~g~ 366 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTS------IGAAPFLHDGGW-----DSSHRYFMTAANNSNKVAVIDSKDRRL---SALVDVGK 366 (543)
T ss_dssp TTEEEEEECTTSSSCEEEE------EECCSSCCCEEE-----CTTSCEEEEEEGGGTEEEEEETTTTEE---EEEEECSS
T ss_pred CCeEEEEEecCCCcceeEE------eccCcCccCceE-----CCCCCEEEEEecCCCeEEEEECCCCeE---EEeeccCC
Confidence 9999999987543221111 112233444444 49999877665 588999999986532 11111110
Q ss_pred CCce-eeeEEEEeeeeeccC-CCEEEEEe-CCCcEEEEECCCCC-----ccceeeecCCCCCeEEEEEcCCCCEEEEEe-
Q 010871 414 APRV-HSIRASFCPLLSLEK-GEYIVAGS-EDSNVYFYDLAKPK-----HSCVNKLQGHRFPVVAVAWNHGENLLASSD- 484 (498)
Q Consensus 414 ~~~~-~~~~~~~~~~~~~~~-~~~l~~gs-~dg~I~iwd~~~~~-----~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~- 484 (498)
.++. .... -+.| + +.+++++. .|++|.+||+.+.. .+++.++.+|...+..|+|+|++++|++++
T Consensus 367 ~ph~g~g~~-~~~p-----~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~ 440 (543)
T 1nir_A 367 TPHPGRGAN-FVHP-----KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 440 (543)
T ss_dssp SBCCTTCEE-EEET-----TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCT
T ss_pred CCCCCCCcc-cCCC-----CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecC
Confidence 0111 1111 1233 5 66677765 58999999998732 567899999999999999999999999987
Q ss_pred ------CCCeEEEeecCCC
Q 010871 485 ------LYGIVIVWKRAKT 497 (498)
Q Consensus 485 ------~Dg~i~iW~~~~~ 497 (498)
.+++|.|||+++.
T Consensus 441 ~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 441 FNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TCSSHHHHTCEEEEETTCT
T ss_pred CCCCcccCceEEEEECCCC
Confidence 2789999999864
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=1.2e-24 Score=215.04 Aligned_cols=273 Identities=8% Similarity=0.052 Sum_probs=204.7
Q ss_pred ceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecC
Q 010871 151 HRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGH 230 (498)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h 230 (498)
..+.+.......+.+|........... ....+.+|.+.|++++|++ ++.++++++.|+.|++||+.+ .+....+..|
T Consensus 134 ~~~~~~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~-~~~~~~~~~~ 210 (433)
T 3bws_A 134 TRLAIPLLEDEGMDVLDINSGQTVRLS-PPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKT-LAYKATVDLT 210 (433)
T ss_dssp SEEEEEBTTSSSEEEEETTTCCEEEEC-CCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTT-CCEEEEEECS
T ss_pred CeEEEEeCCCCeEEEEECCCCeEeeec-CcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCC-ceEEEEEcCC
Confidence 334444444455666654443332221 1114568999999999998 899999999999999999987 7788888899
Q ss_pred CCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEe--------CCCcEEEEE
Q 010871 231 SKDVTDFDFSSNNQYIA-SSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGN--------ANKEITVFN 301 (498)
Q Consensus 231 ~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~--------~dg~i~iwd 301 (498)
...+.+++|+|++++++ +++.|+.|++||+.+++.+..+..+..+.+++|+|++ ..+++++ .|+.|++||
T Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEE
T ss_pred CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEE
Confidence 99999999999999885 4557999999999999999888888889999999966 4555555 588999999
Q ss_pred cCCCcEEEEeecCCCeEEEEEcCCCCE-EEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC
Q 010871 302 FSTGRIIKKLVVDSEVTSMDHDHTGQL-LFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG 380 (498)
Q Consensus 302 ~~~~~~~~~~~~~~~i~~l~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~ 380 (498)
+.+++.+..+.+...+.+++|+|+++. +++++.++.|++||+....... . ..+...+.++.|. |++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~--~------~~~~~~~~~~~~s-----~dg 356 (433)
T 3bws_A 290 MDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK--S------IPVFDKPNTIALS-----PDG 356 (433)
T ss_dssp TTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE--E------EECSSSEEEEEEC-----TTS
T ss_pred CCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE--E------ecCCCCCCeEEEc-----CCC
Confidence 999998888877789999999999975 4666899999999987433211 1 1234456666555 999
Q ss_pred cEEEEEEc---------------CCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeC-CCc
Q 010871 381 PVLLTCTQ---------------DGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE-DSN 444 (498)
Q Consensus 381 ~~l~t~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-dg~ 444 (498)
++|++++. ||.|++||+.+... ........ ....+.|+| +|++|++++. |+.
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~-----~~~~~~~~--~~~~~~~s~-----dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV-----KEFWEAGN--QPTGLDVSP-----DNRYLVISDFLDHQ 424 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE-----EEEEECSS--SEEEEEECT-----TSCEEEEEETTTTE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcE-----EEEecCCC--CCceEEEcC-----CCCEEEEEECCCCe
Confidence 99988887 57999999975421 11111122 223335555 9999988875 999
Q ss_pred EEEEECCC
Q 010871 445 VYFYDLAK 452 (498)
Q Consensus 445 I~iwd~~~ 452 (498)
|++|++..
T Consensus 425 i~v~~~~~ 432 (433)
T 3bws_A 425 IRVYRRDG 432 (433)
T ss_dssp EEEEEETT
T ss_pred EEEEEecC
Confidence 99999863
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=7.4e-25 Score=215.09 Aligned_cols=278 Identities=12% Similarity=0.097 Sum_probs=202.1
Q ss_pred ccEEEEEEecCCCCEEEEEe----CCC----cEEEEEc--CCCCcee--EEeecCCCCeEEEEEcc--------------
Q 010871 188 AAVTILKFGHMSSDLLAYGA----SDG----TLTVCTV--SDPPKVI--KLLNGHSKDVTDFDFSS-------------- 241 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~----~dg----~i~iwd~--~~~~~~~--~~~~~h~~~V~~l~~s~-------------- 241 (498)
..|...+|.+.+.+++++|+ .|| .|+|||+ .+ ++.+ ..+.+|...+..+++++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP-GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST-TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC-CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 45677788885667888886 467 8999999 77 4555 55889999888888775
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCcEEEEEec-CCCeEEEEEEcCCCcEEEEEeCCC---cEEEEEcCCCcEEEEe
Q 010871 242 NNQYIASSSMD------KTVRVWELTKGDCIRVIYG-VSSQLCIRFHPVNNNFLSVGNANK---EITVFNFSTGRIIKKL 311 (498)
Q Consensus 242 ~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~ 311 (498)
.+..|+.++.+ +.|++||+..+. ...+.. ...+.+++|+|++ ..|++++.++ .|++||+.+++.....
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcEEEee
Confidence 15566666554 799999998554 445544 4588899999965 5666676664 9999999999887666
Q ss_pred ecCCCeEEEEEcCCCCEEE-EEcCCCe--EEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc
Q 010871 312 VVDSEVTSMDHDHTGQLLF-CGDAQGC--IYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ 388 (498)
Q Consensus 312 ~~~~~i~~l~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~ 388 (498)
.+...+.+++|+|+|+.|+ +++.++. |++||+...... ....+...+.++.|+ |+|++|++++.
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~--------~l~~~~~~~~~~~~s-----pdg~~l~~~s~ 286 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--------QVTDGRSNNTEPTWF-----PDSQNLAFTSD 286 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--------ECCCCSSCEEEEEEC-----TTSSEEEEEEC
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE--------eCcCCCCcccceEEC-----CCCCEEEEEEC
Confidence 6788999999999999877 6666554 899988654321 124455667777665 99999998886
Q ss_pred -CC--cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC---CcEEEEECCCCCccceeeec
Q 010871 389 -DG--NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED---SNVYFYDLAKPKHSCVNKLQ 462 (498)
Q Consensus 389 -dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d---g~I~iwd~~~~~~~~~~~~~ 462 (498)
++ .|.+||+..+.... . .. .........|+| +|++|++++.+ ..|++||+.+++ ...+.
T Consensus 287 ~~g~~~i~~~d~~~~~~~~-----l-~~-~~~~~~~~~~sp-----dG~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~ 351 (415)
T 2hqs_A 287 QAGRPQVYKVNINGGAPQR-----I-TW-EGSQNQDADVSS-----DGKFMVMVSSNGGQQHIAKQDLATGG---VQVLS 351 (415)
T ss_dssp TTSSCEEEEEETTSSCCEE-----C-CC-SSSEEEEEEECT-----TSSEEEEEEECSSCEEEEEEETTTCC---EEECC
T ss_pred CCCCcEEEEEECCCCCEEE-----E-ec-CCCcccCeEECC-----CCCEEEEEECcCCceEEEEEECCCCC---EEEec
Confidence 45 56777876542111 0 01 111222345555 99999988764 589999999865 34455
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC---eEEEeecCCC
Q 010871 463 GHRFPVVAVAWNHGENLLASSDLYG---IVIVWKRAKT 497 (498)
Q Consensus 463 ~h~~~V~~l~~sp~~~~l~s~~~Dg---~i~iW~~~~~ 497 (498)
.|. .+.+++|+|+|++|++++.++ .|++|+++++
T Consensus 352 ~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 352 STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 554 899999999999999988877 7999998753
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=2.9e-25 Score=204.92 Aligned_cols=176 Identities=14% Similarity=0.088 Sum_probs=135.9
Q ss_pred CCCcEEEEEcCCCCceeEEeecCCCCeEEEEEcc---CCCEEEEEeCCCcEEEEECCCCcEEEEEecCC----CeEEEEE
Q 010871 208 SDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSS---NNQYIASSSMDKTVRVWELTKGDCIRVIYGVS----SQLCIRF 280 (498)
Q Consensus 208 ~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~----~v~~i~~ 280 (498)
.|+.|++|++...++.+..+.+|...+..++|++ ++.+|++++.|++|+|||+.+|++++++.++. .+.+++|
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 4999999999665788888889999999999999 77999999999999999999999999998643 4667899
Q ss_pred EcCCCcE-----------EEEEeCCCcEEEEEcCCCcEEEEee------cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEc
Q 010871 281 HPVNNNF-----------LSVGNANKEITVFNFSTGRIIKKLV------VDSEVTSMDHDHTGQLLFCGDAQGCIYSISM 343 (498)
Q Consensus 281 ~~~~~~~-----------l~~g~~dg~i~iwd~~~~~~~~~~~------~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~ 343 (498)
+|++..+ +++|+.|++|++||..+++.+..+. |...+.+..+ ++.++++|+.|++|++||+
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl 312 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDL 312 (356)
T ss_dssp EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEEC
Confidence 9965332 3678899999999999999877652 3333444444 3778999999999999999
Q ss_pred cCCcccccccccccccCCCcccee-eEEEeEeeEcCCCcEEEEEEcCCcEEEEEc
Q 010871 344 ESHSGALSRSHRHRTTGKRKCPVT-TVQYRSFSLLAGGPVLLTCTQDGNLSFFSV 397 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~ 397 (498)
........ +.+|...+. .+.|+ |+|++|++|+.|++|+|||+
T Consensus 313 ~tGk~l~t-------L~gH~~~vvs~vafS-----PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 313 LLGQCTAL-------LPPVSDQHWSFVKWS-----GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTCSEEEE-------ECCC--CCCCEEEEC-----SSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEE-------ecCCCCCeEEEEEEC-----CCCCEEEEEECCCcEEEecC
Confidence 75443221 245655444 46665 99999999999999999985
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=3.8e-24 Score=216.60 Aligned_cols=290 Identities=11% Similarity=0.102 Sum_probs=210.6
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEc--CCCCceeEEeecCCCCeEEEEEcc----CCCEEEEEeC-CCcEEEEECCC
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTV--SDPPKVIKLLNGHSKDVTDFDFSS----NNQYIASSSM-DKTVRVWELTK 262 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~--~~~~~~~~~~~~h~~~V~~l~~s~----~~~~l~s~s~-dg~v~iwd~~~ 262 (498)
+.+++|+| ++++|++++.|+.|.+||+ .+ .+.+..+. +...+..++|+| +|++|++++. +++|.+||..+
T Consensus 181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKE-PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSS-CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred cceEEECC-CCCEEEEECCCCeEEEEECcCCC-CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence 89999999 9999999999999999999 66 67777777 455689999999 9999998884 89999999999
Q ss_pred CcEEEEEecC------------CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEE--EeecCCCeEEEEEcCCCCE
Q 010871 263 GDCIRVIYGV------------SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIK--KLVVDSEVTSMDHDHTGQL 328 (498)
Q Consensus 263 ~~~~~~~~~~------------~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~i~~l~~~~~~~~ 328 (498)
++++.++..+ ..+..+.++|++..++++...++.|.+||+.+.+.+. .+.+...+..+.|+|+|++
T Consensus 258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~ 337 (543)
T 1nir_A 258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY 337 (543)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE
T ss_pred cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE
Confidence 9999888752 2577899999888889999999999999998866444 5566777889999999997
Q ss_pred EEEE-cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCC-CcEEEEEE-cCCcEEEEEcccccccee
Q 010871 329 LFCG-DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAG-GPVLLTCT-QDGNLSFFSVALEIQGYL 405 (498)
Q Consensus 329 l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~-~~~l~t~s-~dg~i~iwd~~~~~~~~~ 405 (498)
|+++ ..++.|.+||..+.+.. ...... ...|......+ + +|+ +..++++. .|++|.+||+........
T Consensus 338 l~va~~~~~~v~v~D~~tg~l~--~~i~~g-~~ph~g~g~~~-~-----~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~ 408 (543)
T 1nir_A 338 FMTAANNSNKVAVIDSKDRRLS--ALVDVG-KTPHPGRGANF-V-----HPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 408 (543)
T ss_dssp EEEEEGGGTEEEEEETTTTEEE--EEEECS-SSBCCTTCEEE-E-----ETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred EEEEecCCCeEEEEECCCCeEE--EeeccC-CCCCCCCCccc-C-----CCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence 7655 56889999998754322 211110 11233222222 1 276 56666665 589999999986211100
Q ss_pred eEeEeeccCCc-eeeeEEEEeeeeeccCCCEEEEEe-------CCCcEEEEECCCCCccceeee--------cCCCCCeE
Q 010871 406 TFRCSLKLAPR-VHSIRASFCPLLSLEKGEYIVAGS-------EDSNVYFYDLAKPKHSCVNKL--------QGHRFPVV 469 (498)
Q Consensus 406 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~gs-------~dg~I~iwd~~~~~~~~~~~~--------~~h~~~V~ 469 (498)
..++...+..+ .....+.++| ++++|++++ .+++|.+||+.+.+.. ...+ ..+...+.
T Consensus 409 ~~~~v~~l~~~g~~~~~v~~~p-----dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~-~~~~~v~~~~~~~~~~~~~~ 482 (543)
T 1nir_A 409 AWKKVAELQGQGGGSLFIKTHP-----KSSHLYVDTTFNPDARISQSVAVFDLKNLDAK-YQVLPIAEWADLGEGAKRVV 482 (543)
T ss_dssp BTSEEEEEECSCSCCCCEECCT-----TCCEEEECCTTCSSHHHHTCEEEEETTCTTSC-CEEECHHHHHCCCSSCCEEE
T ss_pred cCeEEEEEEcCCCCceEEEcCC-----CCCcEEEecCCCCCcccCceEEEEECCCCCCC-eEEeechhhcccCCCCCceE
Confidence 01111111111 1122234555 999999987 2679999999986532 1232 35677899
Q ss_pred EEEEcCCCCEEEEEe-----CCCeEEEeecCCC
Q 010871 470 AVAWNHGENLLASSD-----LYGIVIVWKRAKT 497 (498)
Q Consensus 470 ~l~~sp~~~~l~s~~-----~Dg~i~iW~~~~~ 497 (498)
.+.|+|+|+.|+++. .|+.|.|||.+++
T Consensus 483 ~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 483 QPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp EEEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred eccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 999999999888663 4799999998875
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.7e-24 Score=211.05 Aligned_cols=266 Identities=12% Similarity=0.101 Sum_probs=198.7
Q ss_pred eeecccccEEEEEEecC-------------CCCEEEEEeCC------CcEEEEEcCCCCceeEEeecCCCCeEEEEEccC
Q 010871 182 IFDQCKAAVTILKFGHM-------------SSDLLAYGASD------GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSN 242 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~-------------~~~~lasg~~d------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~ 242 (498)
.+.+|...+..+++++. .+..++.++.+ +.|++||+.. ...+.+.+|...|.+++|+|+
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS--CSCEEEEEESSCEEEEEECTT
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC--CCCEEEeCCCCcceeeEEcCC
Confidence 46788888887777641 15667766654 7999999974 456778889999999999999
Q ss_pred CCEEEEEeCCC---cEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCc--EEEEEcCCCcEEEEeecCCCe
Q 010871 243 NQYIASSSMDK---TVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKE--ITVFNFSTGRIIKKLVVDSEV 317 (498)
Q Consensus 243 ~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~i 317 (498)
|++|++++.++ .|++||+.+++..........+.+++|+|++..++++++.++. |++||+.+++......+...+
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~ 269 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNN 269 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCE
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcc
Confidence 99999999885 9999999999876544444678899999977666667776665 999999998875555677889
Q ss_pred EEEEEcCCCCEEEEEcC-CC--eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC---Cc
Q 010871 318 TSMDHDHTGQLLFCGDA-QG--CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD---GN 391 (498)
Q Consensus 318 ~~l~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d---g~ 391 (498)
.+++|+|+|+.|++++. ++ .|++||+....... ...+...+..+.|+ |+|++|++++.+ ..
T Consensus 270 ~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~--------l~~~~~~~~~~~~s-----pdG~~l~~~~~~~g~~~ 336 (415)
T 2hqs_A 270 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR--------ITWEGSQNQDADVS-----SDGKFMVMVSSNGGQQH 336 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE--------CCCSSSEEEEEEEC-----TTSSEEEEEEECSSCEE
T ss_pred cceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE--------EecCCCcccCeEEC-----CCCCEEEEEECcCCceE
Confidence 99999999998887775 45 67777775433111 12334455555554 999999988875 58
Q ss_pred EEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC---cEEEEECCCCCccceeeecCCCCCe
Q 010871 392 LSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS---NVYFYDLAKPKHSCVNKLQGHRFPV 468 (498)
Q Consensus 392 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg---~I~iwd~~~~~~~~~~~~~~h~~~V 468 (498)
|.+||+.++.. .. ...........|+| +|++|++++.++ .|++||+... ....+.+|.+.|
T Consensus 337 i~~~d~~~~~~-----~~---l~~~~~~~~~~~sp-----dg~~l~~~s~~~~~~~l~~~d~~g~---~~~~l~~~~~~v 400 (415)
T 2hqs_A 337 IAKQDLATGGV-----QV---LSSTFLDETPSLAP-----NGTMVIYSSSQGMGSVLNLVSTDGR---FKARLPATDGQV 400 (415)
T ss_dssp EEEEETTTCCE-----EE---CCCSSSCEEEEECT-----TSSEEEEEEEETTEEEEEEEETTSC---CEEECCCSSSEE
T ss_pred EEEEECCCCCE-----EE---ecCCCCcCCeEEcC-----CCCEEEEEEcCCCccEEEEEECCCC---cEEEeeCCCCCC
Confidence 99999986522 11 11111233346665 999999988877 7999999853 367888999999
Q ss_pred EEEEEcCCCC
Q 010871 469 VAVAWNHGEN 478 (498)
Q Consensus 469 ~~l~~sp~~~ 478 (498)
.+++|+|...
T Consensus 401 ~~~~~~~~~~ 410 (415)
T 2hqs_A 401 KFPAWSPYLH 410 (415)
T ss_dssp EEEEECCCCC
T ss_pred cCCccccccc
Confidence 9999999643
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.9e-23 Score=199.44 Aligned_cols=282 Identities=8% Similarity=0.037 Sum_probs=190.5
Q ss_pred EEEEEeCCCcEEEEEcCCCCce-eEEeecCCCCeEEEEEccCCCEEEEEeCC-CcEEEEECC--CCc--EEEEEecCCCe
Q 010871 202 LLAYGASDGTLTVCTVSDPPKV-IKLLNGHSKDVTDFDFSSNNQYIASSSMD-KTVRVWELT--KGD--CIRVIYGVSSQ 275 (498)
Q Consensus 202 ~lasg~~dg~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~s~d-g~v~iwd~~--~~~--~~~~~~~~~~v 275 (498)
++++++.|+.|++|++...+.. ......|...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 86 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 86 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence 4555578999999999642322 22223577889999999999999988887 899999998 554 44556655678
Q ss_pred EEEEEEcCCCcEEEEEeCCCcEEEEEc---CCCcEEEEeecCCCeEEEEEcCCCCEEEEEc-CCCeEEEEEccCCccccc
Q 010871 276 LCIRFHPVNNNFLSVGNANKEITVFNF---STGRIIKKLVVDSEVTSMDHDHTGQLLFCGD-AQGCIYSISMESHSGALS 351 (498)
Q Consensus 276 ~~i~~~~~~~~~l~~g~~dg~i~iwd~---~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~ 351 (498)
..++|+|++..+++++..++.|.+||+ ...+.+..+.....+.+++|+|+++.+++++ .++.|++|++..... ..
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~ 165 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH-LV 165 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC-EE
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc-ee
Confidence 899999977555566656899999999 4445555555666799999999999887776 899999999975221 11
Q ss_pred ccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccceeeEeEeeccCC----ceeeeEEEEee
Q 010871 352 RSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYLTFRCSLKLAP----RVHSIRASFCP 426 (498)
Q Consensus 352 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 426 (498)
..............+..+.|. |+++++++++ .++.|.+|++.................. ......+.|+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~-----pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFH-----PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP 240 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEEC-----TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred eecccccccCCCCCcceEEEC-----CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence 100000001122344445554 9999776655 7899999999642111111111111111 11222345555
Q ss_pred eeeccCCCEEEEE-eCCCcEEEEECC--CCCccceeeecCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEeecC
Q 010871 427 LLSLEKGEYIVAG-SEDSNVYFYDLA--KPKHSCVNKLQGHRFPVVAVAWNHGENLLASSD-LYGIVIVWKRA 495 (498)
Q Consensus 427 ~~~~~~~~~l~~g-s~dg~I~iwd~~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~i~iW~~~ 495 (498)
+|++|+++ ..++.|.+||+. ++....+..+..+.. +.+++|+|++++|++++ .++.|.+|+++
T Consensus 241 -----dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 241 -----DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp -----TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred -----CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 99887754 478999999998 333445555555544 89999999999888887 68999999654
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=4.3e-23 Score=196.25 Aligned_cols=284 Identities=10% Similarity=0.074 Sum_probs=194.6
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCcE-EEEEec
Q 010871 194 KFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM-DKTVRVWELTKGDC-IRVIYG 271 (498)
Q Consensus 194 ~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~~~~~-~~~~~~ 271 (498)
.|.+..+..+++++.++.|.+||..+ ++....+..+...+ +++|+|++++|++++. ++.|.+||+.+++. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT-LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT-CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc-cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 45553555688888999999999988 67777777666677 9999999997776665 88999999999987 777777
Q ss_pred CCCeEE-EEEEcCCCcEEEEEeCC-C--cEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEE-EEcCCCe-EEEEEccC
Q 010871 272 VSSQLC-IRFHPVNNNFLSVGNAN-K--EITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLF-CGDAQGC-IYSISMES 345 (498)
Q Consensus 272 ~~~v~~-i~~~~~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~dg~-i~i~d~~~ 345 (498)
+..... ++|+|++ .+++++..+ + .|.+||+.+++.+..+.....+.+++|+|+|++++ +...++. |.+|+++.
T Consensus 82 ~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 766666 9999966 455555554 3 89999999999998888778889999999998555 4455577 99999874
Q ss_pred CcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccceeeEeEeeccCCceeeeEEEE
Q 010871 346 HSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASF 424 (498)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (498)
........ ... .........+. ++|+|+++++++ .++.|.+||+.++...... ...... .....+.|
T Consensus 161 ~g~~~~~~--~~~-~~~~~~~~~~~-----~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~--~~~~~~--~~~~~~~~ 228 (331)
T 3u4y_A 161 DGVLFDTG--QEF-ISGGTRPFNIT-----FTPDGNFAFVANLIGNSIGILETQNPENITLL--NAVGTN--NLPGTIVV 228 (331)
T ss_dssp TCCEEEEE--EEE-ECSSSSEEEEE-----ECTTSSEEEEEETTTTEEEEEECSSTTSCEEE--EEEECS--SCCCCEEE
T ss_pred CCcEeecC--Ccc-ccCCCCccceE-----ECCCCCEEEEEeCCCCeEEEEECCCCccccee--eeccCC--CCCceEEE
Confidence 32211111 000 11122344444 449999665555 6889999999765331101 111111 12222355
Q ss_pred eeeeeccCCCEEEEEe-CCCcEEEEECCCCCccceeeecCC----CC---CeEEEEEcCCCCEEEEEe-CCCeEEEeecC
Q 010871 425 CPLLSLEKGEYIVAGS-EDSNVYFYDLAKPKHSCVNKLQGH----RF---PVVAVAWNHGENLLASSD-LYGIVIVWKRA 495 (498)
Q Consensus 425 ~~~~~~~~~~~l~~gs-~dg~I~iwd~~~~~~~~~~~~~~h----~~---~V~~l~~sp~~~~l~s~~-~Dg~i~iW~~~ 495 (498)
+| +|++++++. .++.|.+||+.+++...+..+..+ .. .+..++|+|++++|++++ .++.|.+|+++
T Consensus 229 sp-----dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 229 SR-----DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp CT-----TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CC-----CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 55 999776655 478899999998654334433322 22 235689999999886555 56799999997
Q ss_pred CC
Q 010871 496 KT 497 (498)
Q Consensus 496 ~~ 497 (498)
+.
T Consensus 304 ~~ 305 (331)
T 3u4y_A 304 GK 305 (331)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 132
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=1e-24 Score=212.76 Aligned_cols=233 Identities=11% Similarity=0.048 Sum_probs=160.8
Q ss_pred ceeeeeecCCCCCCCccCCCCCcceeecceeeeecccccEEEEEEec-------CCCCEEEEEeCCCcEEEEEcCCCCce
Q 010871 151 HRTSFSSTASDSDQPRRQGPEPAYSFVGMHCIFDQCKAAVTILKFGH-------MSSDLLAYGASDGTLTVCTVSDPPKV 223 (498)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-------~~~~~lasg~~dg~i~iwd~~~~~~~ 223 (498)
.........+..+++|........... ....+.||.+.|++|+|+| .++++||+|+.|++|+|||+.+ ...
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~-~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~-~~~ 178 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQH-VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD-EGP 178 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEE-EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET-TEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceee-eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC-Cce
Confidence 334455666777788765544322211 2235789999999999987 2678999999999999999987 666
Q ss_pred eEEeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCcEEEEEe-------------------------cC-CCeE
Q 010871 224 IKLLNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELTKGDCIRVIY-------------------------GV-SSQL 276 (498)
Q Consensus 224 ~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~-------------------------~~-~~v~ 276 (498)
...+.+|...|.+++|+|++ .+|++++.||+|++||+.+++...... ++ ..+.
T Consensus 179 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~ 258 (393)
T 4gq1_A 179 ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA 258 (393)
T ss_dssp EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence 77777899999999999987 489999999999999999876543321 22 3466
Q ss_pred EEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeE------------------EEEEcC--CCCEEEEEcCC
Q 010871 277 CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVT------------------SMDHDH--TGQLLFCGDAQ 335 (498)
Q Consensus 277 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~------------------~l~~~~--~~~~l~~~~~d 335 (498)
++.|.+.++..+++++.|+++++||+..++....+. +...+. ...+++ ++.++++|+.|
T Consensus 259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D 338 (393)
T 4gq1_A 259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH 338 (393)
T ss_dssp EEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence 888886677899999999999999998876655442 222222 223333 23366788899
Q ss_pred CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 336 GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
|.|++||+........ ...|..+|.++.|+ |+|++|++++.+| +.+|.+.
T Consensus 339 g~V~lwd~~~~~~~~~-------~~~~~~~V~svafs-----pdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 339 GLIQLINTYEKDSNSI-------PIQLGMPIVDFCWH-----QDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TEEEEEETTCTTCCEE-------EEECSSCEEEEEEC-----TTSSEEEEEESSE-EEEEEEG
T ss_pred CEEEEEECCCCcEEEE-------ecCCCCcEEEEEEc-----CCCCEEEEEeCCC-eEEEEEe
Confidence 9999999875433221 24566788888887 9999999998776 5566553
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.8e-22 Score=188.11 Aligned_cols=257 Identities=13% Similarity=0.136 Sum_probs=184.4
Q ss_pred EEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-CcEEEEEecC--CCeEEEEEE
Q 010871 205 YGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK-GDCIRVIYGV--SSQLCIRFH 281 (498)
Q Consensus 205 sg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~--~~v~~i~~~ 281 (498)
.++.|+.|++||+.+ ++.. .+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ..+.+++|+
T Consensus 17 ~~~~~~~i~~~d~~~-~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRT-RKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTT-TEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCC-Ccee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 346789999999987 4443 5566899999999999999999987 78999999999 8877666555 456789999
Q ss_pred cCCCcEEEEEe--CCCc--EEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEE-EEcCCCeEEEEEccCCcccccccccc
Q 010871 282 PVNNNFLSVGN--ANKE--ITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLF-CGDAQGCIYSISMESHSGALSRSHRH 356 (498)
Q Consensus 282 ~~~~~~l~~g~--~dg~--i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~ 356 (498)
|++ .+|++++ .++. |.+|++.+++ ...+.....+..++|+|+++.|+ ++..++.+.+|+++........
T Consensus 94 pdg-~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~---- 167 (297)
T 2ojh_A 94 PDG-ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR---- 167 (297)
T ss_dssp TTS-SEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE----
T ss_pred CCC-CEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE----
Confidence 965 5666666 3344 4445555555 34455555689999999999877 7788999999987654433221
Q ss_pred cccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCE
Q 010871 357 RTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEY 435 (498)
Q Consensus 357 ~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (498)
...+...+.++.|+ |++++|++++ .++.+++|++........ .. ...........|+ ++|++
T Consensus 168 --~~~~~~~~~~~~~s-----~dg~~l~~~~~~~~~~~i~~~~~~~~~~~---~~--~~~~~~~~~~~~s-----~dg~~ 230 (297)
T 2ojh_A 168 --LTHGEGRNDGPDYS-----PDGRWIYFNSSRTGQMQIWRVRVDGSSVE---RI--TDSAYGDWFPHPS-----PSGDK 230 (297)
T ss_dssp --CCCSSSCEEEEEEC-----TTSSEEEEEECTTSSCEEEEEETTSSCEE---EC--CCCSEEEEEEEEC-----TTSSE
T ss_pred --cccCCCccccceEC-----CCCCEEEEEecCCCCccEEEECCCCCCcE---EE--ecCCcccCCeEEC-----CCCCE
Confidence 23455566666665 9999888776 589999999863322111 11 1111122223444 59999
Q ss_pred EEEEeCC-----------CcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 010871 436 IVAGSED-----------SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYG 487 (498)
Q Consensus 436 l~~gs~d-----------g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg 487 (498)
|++++.+ +.|++||+.+++...+..+.+|...+.+++|+|++++|++++.|.
T Consensus 231 l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 231 VVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9988876 569999999876555666668888999999999999998887653
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=4.1e-21 Score=184.08 Aligned_cols=273 Identities=10% Similarity=0.068 Sum_probs=198.6
Q ss_pred cccEEEEEEecCCCCEEEEEeC-------CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEE-EEeCCCcEEEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGAS-------DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA-SSSMDKTVRVW 258 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~-------dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iw 258 (498)
...+..++|+| ++++|++++. ++.|.+||..+ ++....+.. ...+..++|+|++++++ +...++.|.+|
T Consensus 40 ~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 40 GKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVT-LEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp ESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTT-CCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCC-CeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 45688999999 8888777774 56899999988 666666654 34578899999998655 45557999999
Q ss_pred ECCCCcEEEEEecCC----------CeEEEEEEcCCCcEEEEE-eCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCC
Q 010871 259 ELTKGDCIRVIYGVS----------SQLCIRFHPVNNNFLSVG-NANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTG 326 (498)
Q Consensus 259 d~~~~~~~~~~~~~~----------~v~~i~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~ 326 (498)
|..+++.+..+..+. .+..++|+|++..+++++ +.++.|.+||+.+++.+..+. +...+.+++|+|++
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 999999988887653 157899999776555555 357899999999999998887 66668999999999
Q ss_pred CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC-CcEEEEEcccccccee
Q 010871 327 QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD-GNLSFFSVALEIQGYL 405 (498)
Q Consensus 327 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d-g~i~iwd~~~~~~~~~ 405 (498)
+.+++++.++.|.+||+............ ...+...+..+.+. |+++++++++.+ +.|.+||..++..
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~s-----~dg~~l~~~~~~~~~v~~~d~~~~~~--- 265 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLL---DDGKEHFFINISLD-----TARQRAFITDSKAAEVLVVDTRNGNI--- 265 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECC---CSSSCCCEEEEEEE-----TTTTEEEEEESSSSEEEEEETTTCCE---
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcC---CCCCCcccceEEEC-----CCCCEEEEEeCCCCEEEEEECCCCcE---
Confidence 99999999999999998654322211110 11233345555555 999987777654 8999999975422
Q ss_pred eEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEe-CCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEe
Q 010871 406 TFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGS-EDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSD 484 (498)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~ 484 (498)
... ...... ....|+| +|++++++. .++.|.+||+.+++ .+..+.. ...+.+++|+|++++|+.+.
T Consensus 266 ~~~--~~~~~~---~~~~~s~-----dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~-~~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 266 LAK--VAAPES---LAVLFNP-----ARNEAYVTHRQAGKVSVIDAKSYK--VVKTFDT-PTHPNSLALSADGKTLYVSV 332 (353)
T ss_dssp EEE--EECSSC---CCEEEET-----TTTEEEEEETTTTEEEEEETTTTE--EEEEEEC-CSEEEEEEECTTSCEEEEEE
T ss_pred EEE--EEcCCC---ceEEECC-----CCCEEEEEECCCCeEEEEECCCCe--EEEEEec-CCCCCeEEEcCCCCEEEEEE
Confidence 111 111111 2345665 898666555 68999999998854 4555554 34689999999999777666
Q ss_pred CC
Q 010871 485 LY 486 (498)
Q Consensus 485 ~D 486 (498)
.+
T Consensus 333 ~~ 334 (353)
T 3vgz_A 333 KQ 334 (353)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=2.1e-22 Score=213.12 Aligned_cols=282 Identities=11% Similarity=0.085 Sum_probs=197.8
Q ss_pred cccEEEEEEecCCCCEEEEEeC-CC-----cEEEEEcCCCCceeEEeecCCC------------------------CeEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGAS-DG-----TLTVCTVSDPPKVIKLLNGHSK------------------------DVTD 236 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~-dg-----~i~iwd~~~~~~~~~~~~~h~~------------------------~V~~ 236 (498)
...|.+++|+| +|++|++++. |+ .|++||+.+ ++....+..|.. .|.+
T Consensus 36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGS-GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTT-CCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCC-CceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 34689999999 9999999998 88 899999988 666666655433 3889
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCC---cEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee
Q 010871 237 FDFSSNNQYIASSSMDKTVRVWELTKG---DCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV 312 (498)
Q Consensus 237 l~~s~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 312 (498)
++|+|||++|++++. +.|.+||+.++ +.. .+..+ ..+..++|+|++ +.|+.++ ++.|++||+.+++......
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-QLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC-BCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE-EcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEEEecc
Confidence 999999999999886 89999999988 443 34444 578899999966 5566654 5699999999887765543
Q ss_pred cCCC-----------------eEEEEEcCCCCEEEEEcCCC---------------------------------eEEEEE
Q 010871 313 VDSE-----------------VTSMDHDHTGQLLFCGDAQG---------------------------------CIYSIS 342 (498)
Q Consensus 313 ~~~~-----------------i~~l~~~~~~~~l~~~~~dg---------------------------------~i~i~d 342 (498)
.... +.+++|+|+|+.|++++.++ .|++||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 2221 47899999999998887655 777887
Q ss_pred ccC-CcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-----CCcEEEEEccccccceeeEeEeeccCCc
Q 010871 343 MES-HSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-----DGNLSFFSVALEIQGYLTFRCSLKLAPR 416 (498)
Q Consensus 343 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 416 (498)
+.. ........ ...+...+. .+++ |+|++|++++. +..|.+||+.++...... .......
T Consensus 270 ~~~~~~~~~~~~-----~~~~~~~~~-----~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~---~~~~~~~ 335 (741)
T 2ecf_A 270 PAEQAQTQWIDL-----GKEQDIYLA-----RVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA---HETSPTW 335 (741)
T ss_dssp SSTTCCCEEECC-----CSCSSEEEE-----EEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE---EEECSSC
T ss_pred CCCCCceEEecC-----CCCcceEEE-----EEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE---EcCCCCc
Confidence 764 33211110 012333343 4556 78999987765 567999998865321111 1111111
Q ss_pred e-eeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEE-EEcCCCCEEE-EEeCCC--eEEE
Q 010871 417 V-HSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAV-AWNHGENLLA-SSDLYG--IVIV 491 (498)
Q Consensus 417 ~-~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l-~~sp~~~~l~-s~~~Dg--~i~i 491 (498)
+ ......|+| ||+++++++.||.++||.+..... ...+..|...|..+ .|+|+++.|+ +++.++ .++|
T Consensus 336 ~~~~~~~~~sp-----dg~~~~~~~~~g~~~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l 408 (741)
T 2ecf_A 336 VPLHNSLRFLD-----DGSILWSSERTGFQHLYRIDSKGK--AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQI 408 (741)
T ss_dssp CCCCSCCEECT-----TSCEEEEECTTSSCEEEEECSSSC--EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEE
T ss_pred CCcCCceEECC-----CCeEEEEecCCCccEEEEEcCCCC--eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEE
Confidence 1 011225554 999999999999888887763222 66777888889887 5999998775 455555 8999
Q ss_pred eecC
Q 010871 492 WKRA 495 (498)
Q Consensus 492 W~~~ 495 (498)
|++.
T Consensus 409 ~~~~ 412 (741)
T 2ecf_A 409 YAVP 412 (741)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=1.6e-21 Score=186.05 Aligned_cols=278 Identities=13% Similarity=0.148 Sum_probs=184.1
Q ss_pred cccccEEEEEEecCCCCEEEEEeCC-CcEEEEEcC--CC-CceeEEeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEEE
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASD-GTLTVCTVS--DP-PKVIKLLNGHSKDVTDFDFSSNNQYIASSSM-DKTVRVWE 259 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~d-g~i~iwd~~--~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd 259 (498)
.|...+.+++|+| ++++|++++.+ +.|.+|++. ++ ...+..+..+. .+.+++|+|++++|++++. ++.|.+||
T Consensus 35 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 35 DVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp ECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 4667889999999 89988888876 999999997 31 12334455444 7899999999998877665 88899999
Q ss_pred C---CCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC-CcEEE----Ee--ecCCCeEEEEEcCCCCEE
Q 010871 260 L---TKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST-GRIIK----KL--VVDSEVTSMDHDHTGQLL 329 (498)
Q Consensus 260 ~---~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~----~~--~~~~~i~~l~~~~~~~~l 329 (498)
+ ..++.+..+..+..+.+++|+|++..+++++..++.|.+||+.+ ++... .+ .....+..++|+|+++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred CCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence 9 44456666666777889999997655555444899999999987 65432 22 234578899999999976
Q ss_pred EEE-cCCCeEEEEEccCCcccccccccccccC-C--CccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccce
Q 010871 330 FCG-DAQGCIYSISMESHSGALSRSHRHRTTG-K--RKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGY 404 (498)
Q Consensus 330 ~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~--~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~ 404 (498)
+++ ..++.|.+|+++...+............ . ....+..+.| +|++++|+++. .++.|.+||+.......
T Consensus 193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~-----s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI-----TPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE-----CTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE-----CCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 554 5889999999965443322111111001 1 1223334444 49998887554 78999999997321111
Q ss_pred eeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEe-CCCcEEEEEC--CCCCccceeeecCCCCCeEEEEEcCCCC
Q 010871 405 LTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGS-EDSNVYFYDL--AKPKHSCVNKLQGHRFPVVAVAWNHGEN 478 (498)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~dg~I~iwd~--~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 478 (498)
........... ...+.|+| +|++|++++ .++.|.+|++ .+++...+..+.. .....+++|.++.+
T Consensus 268 -~~~~~~~~~~~--~~~~~~s~-----dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 268 -SKEGFQPTETQ--PRGFNVDH-----SGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp -EEEEEEECSSS--CCCEEECT-----TSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred -EEeeeecCCCc--cceEEECC-----CCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 11111111111 22335555 999888887 5799999955 4554444555544 24567788877543
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.3e-21 Score=186.25 Aligned_cols=265 Identities=9% Similarity=0.032 Sum_probs=187.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceeEEeec-CCC-CeEEEEEccCCCEEE-EEeCCCcEEEEECCCCcEEEEEecCC----
Q 010871 201 DLLAYGASDGTLTVCTVSDPPKVIKLLNG-HSK-DVTDFDFSSNNQYIA-SSSMDKTVRVWELTKGDCIRVIYGVS---- 273 (498)
Q Consensus 201 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~-h~~-~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~---- 273 (498)
++|++++.++.|.+||+.+ ++....+.. +.. .+.+++|+|++++++ +++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCC-CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 4789999999999999988 666666653 322 488999999997664 55667899999999999888777543
Q ss_pred --CeEEEEEEcCCCcEEEEEe------------CCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEE
Q 010871 274 --SQLCIRFHPVNNNFLSVGN------------ANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 274 --~v~~i~~~~~~~~~l~~g~------------~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
.+..++|+|++. .++++. .++.|.+||+.+++.+..+.....+.+++|+|++++|+++ ++.|+
T Consensus 81 ~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 81 VKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp EECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred cccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEE
Confidence 566899999664 555554 5799999999999988888777788899999999988887 68899
Q ss_pred EEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC------------------------cEEEE
Q 010871 340 SISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG------------------------NLSFF 395 (498)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg------------------------~i~iw 395 (498)
+||+........ ... .....++ .++|++..++..+..+ .|.+|
T Consensus 158 ~~d~~~~~~~~~--~~~---~~~~~~~--------~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 224 (337)
T 1pby_B 158 VMDPEAGTLVED--KPI---QSWEAET--------YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp EEETTTTEEEEE--ECS---TTTTTTT--------BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred EEECCCCcEeee--eec---cccCCCc--------eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEE
Confidence 999875432211 110 1101111 2237776555443322 46788
Q ss_pred EccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcC
Q 010871 396 SVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH 475 (498)
Q Consensus 396 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp 475 (498)
|+.++... .. ...... .....+.|+ ++|++++++ ++.|++||+.+++ .+..+.. ...+.+++|+|
T Consensus 225 d~~~~~~~--~~-~~~~~~--~~~~~~~~s-----~dg~~l~~~--~~~v~~~d~~~~~--~~~~~~~-~~~~~~~~~s~ 289 (337)
T 1pby_B 225 DLETGEMA--MR-EVRIMD--VFYFSTAVN-----PAKTRAFGA--YNVLESFDLEKNA--SIKRVPL-PHSYYSVNVST 289 (337)
T ss_dssp ETTTCCEE--EE-EEEECS--SCEEEEEEC-----TTSSEEEEE--ESEEEEEETTTTE--EEEEEEC-SSCCCEEEECT
T ss_pred eCCCCCce--Ee-ecCCCC--CceeeEEEC-----CCCCEEEEe--CCeEEEEECCCCc--CcceecC-CCceeeEEECC
Confidence 88754321 11 111111 112223455 499999988 7899999998854 4455543 34678999999
Q ss_pred CCCEEEEEeCCCeEEEeecCCC
Q 010871 476 GENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 476 ~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
++++|++++.++.|++||++++
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTC
T ss_pred CCCEEEEEcCCCcEEEEECcCC
Confidence 9999999999999999999865
No 138
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=4.3e-20 Score=176.82 Aligned_cols=273 Identities=8% Similarity=0.115 Sum_probs=174.2
Q ss_pred CCcEEEEEcCCC-CceeE-EeecCCCCeEEEEEccCCCEEEEEeC---CCcEEEEECCCCc--EEEEEe-cCCCeEEEEE
Q 010871 209 DGTLTVCTVSDP-PKVIK-LLNGHSKDVTDFDFSSNNQYIASSSM---DKTVRVWELTKGD--CIRVIY-GVSSQLCIRF 280 (498)
Q Consensus 209 dg~i~iwd~~~~-~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~s~---dg~v~iwd~~~~~--~~~~~~-~~~~v~~i~~ 280 (498)
++.|.+|.++.. +.... ....+...+..++|+|+|+ |++++. ++.|.+|++.+++ .+..+. ....+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 556888877642 33322 3344667788999999998 665554 6899999998775 333333 3356778999
Q ss_pred EcCCCcEEEEEeCCCcEEEEEcCC-C--cEEEEeecC----------CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCc
Q 010871 281 HPVNNNFLSVGNANKEITVFNFST-G--RIIKKLVVD----------SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 281 ~~~~~~~l~~g~~dg~i~iwd~~~-~--~~~~~~~~~----------~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~ 347 (498)
+|++..+++++..++.|.+|++.. + +.+..+... ..+.+++|+|+|+++++...++.|++|++...
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~- 172 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA- 172 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT-
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC-
Confidence 997654444444789999999963 3 333333221 24889999999997777777899999999732
Q ss_pred ccccccccccccCCCccceeeEEEeEeeEcCCCcEEEE-EEcCCcEEEEEccccccceeeEeEeeccCCc----eeeeEE
Q 010871 348 GALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT-CTQDGNLSFFSVALEIQGYLTFRCSLKLAPR----VHSIRA 422 (498)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~ 422 (498)
+........ ..........+ +++|+|+++++ +..++.|.+|++................... .....+
T Consensus 173 g~~~~~~~~--~~~~g~~p~~~-----~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 245 (347)
T 3hfq_A 173 GQLSEQSVL--TMEAGFGPRHL-----VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAI 245 (347)
T ss_dssp SCEEEEEEE--ECCTTCCEEEE-----EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEE
T ss_pred CcEEEeeeE--EcCCCCCCceE-----EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeE
Confidence 211111000 01111223344 44599996666 4568899999987421111111111111111 122223
Q ss_pred EEeeeeeccCCCEE-EEEeCCCcEEEEECCC-CCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC-CeEEEeecC
Q 010871 423 SFCPLLSLEKGEYI-VAGSEDSNVYFYDLAK-PKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY-GIVIVWKRA 495 (498)
Q Consensus 423 ~~~~~~~~~~~~~l-~~gs~dg~I~iwd~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-g~i~iW~~~ 495 (498)
.|+ ++|++| +++..++.|.+|++.. +....+..+..+...+.+++|+|+|++|++++.+ +.|.+|+++
T Consensus 246 ~~s-----pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 246 RLS-----HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEC-----TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEC-----CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 455 499977 5556689999999973 2344566666777778999999999988888754 899999654
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=4.8e-21 Score=201.50 Aligned_cols=280 Identities=14% Similarity=0.134 Sum_probs=191.2
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-----
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK----- 262 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~----- 262 (498)
..|.+++|+| + ..++.+. ++.|++||+.+ ++. ..+..+...+.+++|+|||++|+++ .|+.|.+||+.+
T Consensus 82 ~~v~~~~~sp-d-~~~~~~~-~~~i~~~d~~~-~~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 82 FPSFRTLDAG-R-GLVVLFT-QGGLVGFDMLA-RKV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CCCEEEEETT-T-TEEEEEE-TTEEEEEETTT-TEE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred cCceeEEECC-C-CeEEEEE-CCEEEEEECCC-Cce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 5699999999 6 5555554 59999999987 443 4455677889999999999999985 679999999998
Q ss_pred CcEEEEEecCCC---------------eEEEEEEcCCCcEEEEEe---------------------------------CC
Q 010871 263 GDCIRVIYGVSS---------------QLCIRFHPVNNNFLSVGN---------------------------------AN 294 (498)
Q Consensus 263 ~~~~~~~~~~~~---------------v~~i~~~~~~~~~l~~g~---------------------------------~d 294 (498)
++.......+.. +.++.|+|++ +.|++++ .+
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 876654443332 4689999966 5555554 34
Q ss_pred CcEEEEEcCCCcEEEEe---ecCCCeEEEEEcCCCCEEEEEcCCC-----eEEEEEccCC-cccccccccccccCCCccc
Q 010871 295 KEITVFNFSTGRIIKKL---VVDSEVTSMDHDHTGQLLFCGDAQG-----CIYSISMESH-SGALSRSHRHRTTGKRKCP 365 (498)
Q Consensus 295 g~i~iwd~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~dg-----~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~ 365 (498)
..|.+||+.+++..... .+...+.+++|+|+|+.|++++.++ .|++||+... ......... .......
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~---~~~~~~~ 311 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET---DKHYVEP 311 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE---CSSCCCC
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc---CCCeECc
Confidence 67999999988865544 3456799999999999998877665 8999998754 111111000 0111112
Q ss_pred eeeEEEeEeeEcC--CCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeee-E-EEEeeeeeccCCCEEEEEeC
Q 010871 366 VTTVQYRSFSLLA--GGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSI-R-ASFCPLLSLEKGEYIVAGSE 441 (498)
Q Consensus 366 i~~~~~~~~~~s~--~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~gs~ 441 (498)
+..+. ++| +|+++++++.|+.+++|++..... .... +......+ . ..|+| +|+.|+.++.
T Consensus 312 ~~~~~-----~sp~~dg~~l~~~~~~g~~~l~~~~~~~~---~~~~---l~~~~~~v~~~~~~sp-----dg~~l~~~~~ 375 (706)
T 2z3z_A 312 LHPLT-----FLPGSNNQFIWQSRRDGWNHLYLYDTTGR---LIRQ---VTKGEWEVTNFAGFDP-----KGTRLYFEST 375 (706)
T ss_dssp CSCCE-----ECTTCSSEEEEEECTTSSCEEEEEETTSC---EEEE---CCCSSSCEEEEEEECT-----TSSEEEEEES
T ss_pred cCCce-----eecCCCCEEEEEEccCCccEEEEEECCCC---EEEe---cCCCCeEEEeeeEEcC-----CCCEEEEEec
Confidence 23344 449 999999999999999998862211 1111 11111111 1 24554 9987766555
Q ss_pred C-C----cEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC----CeEEEeecCCC
Q 010871 442 D-S----NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY----GIVIVWKRAKT 497 (498)
Q Consensus 442 d-g----~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D----g~i~iW~~~~~ 497 (498)
+ + .|+.||+.++. ...+. |...+.+++|+|+|++|+.++.+ +.|++|+++++
T Consensus 376 ~~~~~~~~l~~~d~~~~~---~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 376 EASPLERHFYCIDIKGGK---TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp SSCTTCBEEEEEETTCCC---CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred CCCCceEEEEEEEcCCCC---ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 4 4 67777777654 23333 66779999999999988876443 56999998764
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=2.5e-21 Score=198.92 Aligned_cols=276 Identities=11% Similarity=0.051 Sum_probs=192.7
Q ss_pred cccEEEEEEecCCCCEEEEEeC-CCcEEEEEcCCCCceeEEeecCC-CCeEEEEEccCCCEEEEEeC---CCcEEEEECC
Q 010871 187 KAAVTILKFGHMSSDLLAYGAS-DGTLTVCTVSDPPKVIKLLNGHS-KDVTDFDFSSNNQYIASSSM---DKTVRVWELT 261 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~-dg~i~iwd~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~s~---dg~v~iwd~~ 261 (498)
..+|++++|+| +|+.||+++. ||++.||++.+ +. ...+..|. ..|..++|+|| +.+++++. +...++|.+.
T Consensus 21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~-g~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDG-GE-TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEET-TE-EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCC-CCCeEEEEEccCCceeEEEEcC-CC-cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 55799999999 9999999887 99999999854 44 44555555 68999999999 78887775 4556676554
Q ss_pred C---CcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCC---
Q 010871 262 K---GDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQ--- 335 (498)
Q Consensus 262 ~---~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d--- 335 (498)
. +... .+.........+|+|++..++++...++.+.+||+.+++......+.. .+++|+|+|+.|+.++.+
T Consensus 97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp TTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETT
T ss_pred ccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCC
Confidence 3 2222 444444566779999887766666666667799999988766655544 889999999999987776
Q ss_pred -CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC--cEEEEEccccccceeeEeEeec
Q 010871 336 -GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG--NLSFFSVALEIQGYLTFRCSLK 412 (498)
Q Consensus 336 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg--~i~iwd~~~~~~~~~~~~~~~~ 412 (498)
+.|++||+....... ...+...+..+.|+ |||+.|+++..++ .|++||+.++... ....
T Consensus 174 ~~~i~~~d~~~g~~~~--------l~~~~~~~~~~~~S-----pDG~~l~~~~~~~~~~i~~~d~~~~~~~-----~~~~ 235 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLRV--------FDSGEGSFSSASIS-----PGMKVTAGLETAREARLVTVDPRDGSVE-----DLEL 235 (582)
T ss_dssp EEEEEEEETTTCCCEE--------ECCSSCEEEEEEEC-----TTSCEEEEEECSSCEEEEEECTTTCCEE-----ECCC
T ss_pred CeEEEEEcCCCCCceE--------eecCCCccccceEC-----CCCCEEEEccCCCeeEEEEEcCCCCcEE-----EccC
Confidence 789999986543221 23455556555554 9999999888888 8999998765321 1111
Q ss_pred cCCceeeeE-EEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCe---
Q 010871 413 LAPRVHSIR-ASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGI--- 488 (498)
Q Consensus 413 ~~~~~~~~~-~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~--- 488 (498)
....+.... .......+++||.++++++.++.+++|++ ++ ... .+.+.|.+++|+ +++++++++.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~--~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~ 307 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GE--RVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPR 307 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TE--EEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CC--eec---cCCCceEEEEec-CCEEEEEEcCCCCCCe
Confidence 111111110 00001113349999999999999999999 33 222 344678999999 9999998887744
Q ss_pred EEEeecC
Q 010871 489 VIVWKRA 495 (498)
Q Consensus 489 i~iW~~~ 495 (498)
|.+|+..
T Consensus 308 l~~~d~~ 314 (582)
T 3o4h_A 308 IVSLPSG 314 (582)
T ss_dssp EEEETTC
T ss_pred EEEEcCC
Confidence 6666654
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=3.9e-21 Score=202.78 Aligned_cols=288 Identities=11% Similarity=0.096 Sum_probs=189.1
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCC---CeEEEEEccCCCEEEEEeCC---------CcEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSK---DVTDFDFSSNNQYIASSSMD---------KTVR 256 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~s~d---------g~v~ 256 (498)
.+.+++|+| +|+++++ +.||.|++||+.+ ++....+.+|.. .|.+++|+|||++|++++.+ +.|.
T Consensus 18 ~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~-g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWIS-DTEFIYR-EQKGTVRLWNVET-NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSS-SSCBCCC-CSSSCEEEBCGGG-CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cccccEEcC-CCcEEEE-eCCCCEEEEECCC-CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 357789999 8887776 7899999999988 666777777765 49999999999999999875 6788
Q ss_pred EEECCCCcEEEEEecCC----CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec-CC----------------
Q 010871 257 VWELTKGDCIRVIYGVS----SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV-DS---------------- 315 (498)
Q Consensus 257 iwd~~~~~~~~~~~~~~----~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~---------------- 315 (498)
+||+.+++. ..+.... .+..++|+|++. .|+.++. +.|++||+.+++....... ..
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EEECCCCce-EeccCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence 999999876 3343222 267899999764 5555544 7999999998877655532 22
Q ss_pred --CeEEEEEcCCCCEEEEEcCCC----------------------------------eEEEEEccCCccccccccccccc
Q 010871 316 --EVTSMDHDHTGQLLFCGDAQG----------------------------------CIYSISMESHSGALSRSHRHRTT 359 (498)
Q Consensus 316 --~i~~l~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~~~~~ 359 (498)
.+.+++|+|+|+.|++++.++ .|++||+........... ....
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~-~~~~ 250 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP-PDDP 250 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC-CCCG
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC-CccC
Confidence 237899999999998886543 788888765442111100 0001
Q ss_pred CCCccceeeEEEeEeeEcCCCcEEEEEEcC----CcEEEEEccccccceeeEeEeeccCCceee--eEEEEeeeeeccCC
Q 010871 360 GKRKCPVTTVQYRSFSLLAGGPVLLTCTQD----GNLSFFSVALEIQGYLTFRCSLKLAPRVHS--IRASFCPLLSLEKG 433 (498)
Q Consensus 360 ~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 433 (498)
..+...+..+.| +|+|++|++.+.. ..|.+||+.++...... .......+.. ....|+| ||
T Consensus 251 ~~~~~~~~~~~~-----SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~---~~~~~~~~~~~~~~~~~sp-----dg 317 (723)
T 1xfd_A 251 RMREYYITMVKW-----ATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH---EDESEAWLHRQNEEPVFSK-----DG 317 (723)
T ss_dssp GGSSEEEEEEEE-----SSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE---EEECSSCCCCCCCCCEECT-----TS
T ss_pred CCccceeEEEEE-----eCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE---EeccCCEEeccCCCceEcC-----CC
Confidence 112344555555 4999988777543 57999998765321111 1111111110 1235555 99
Q ss_pred CEEEE--EeCCC------cEEEEE-CCCCCccceeeecCCCCCeEE-EEEcCCCCEEEEEeCC---CeEEEeecCC
Q 010871 434 EYIVA--GSEDS------NVYFYD-LAKPKHSCVNKLQGHRFPVVA-VAWNHGENLLASSDLY---GIVIVWKRAK 496 (498)
Q Consensus 434 ~~l~~--gs~dg------~I~iwd-~~~~~~~~~~~~~~h~~~V~~-l~~sp~~~~l~s~~~D---g~i~iW~~~~ 496 (498)
+.|+. +..++ .|++|| ...+...+...+..+...+.. ++|+|+|+.|+..+.+ +.++||+++.
T Consensus 318 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 318 RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred CeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 97665 45666 577777 343220013444444445554 6999999999766655 7899999753
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=2.1e-19 Score=170.68 Aligned_cols=251 Identities=9% Similarity=0.113 Sum_probs=172.7
Q ss_pred cccccEEEEEEecCCCCEEEEEeC-CCcEEEEEcCCCCce-eEEeecCCCCeEEEEEccCCCEEEEEeCCC---cEEEEE
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGAS-DGTLTVCTVSDPPKV-IKLLNGHSKDVTDFDFSSNNQYIASSSMDK---TVRVWE 259 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~-dg~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg---~v~iwd 259 (498)
.+...+ +++|+| ++++|++++. ++.|.+||+.+ ++. ...+..+..+..+++|+|++++|+++..++ .|.+||
T Consensus 38 ~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d 114 (331)
T 3u4y_A 38 LGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQL-EPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYS 114 (331)
T ss_dssp CCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSS-SSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEE
T ss_pred ccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCC-CceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEE
Confidence 345556 999999 7876665555 89999999988 555 777777777776699999999999555553 899999
Q ss_pred CCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCc-EEEEEcCCCcEE-----EEeecCCCeEEEEEcCCCCEEE-EE
Q 010871 260 LTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKE-ITVFNFSTGRII-----KKLVVDSEVTSMDHDHTGQLLF-CG 332 (498)
Q Consensus 260 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~-i~iwd~~~~~~~-----~~~~~~~~i~~l~~~~~~~~l~-~~ 332 (498)
+.+++.+..+..+..+..++|+|++..+++++..++. |.+|++.....+ ..+.....+..++|+|+|++++ ++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 194 (331)
T 3u4y_A 115 FLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN 194 (331)
T ss_dssp TTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred CCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe
Confidence 9999999998888888999999987777777777788 999998754332 2234456789999999999654 55
Q ss_pred cCCCeEEEEEccCCcccc-cccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccceeeEeEe
Q 010871 333 DAQGCIYSISMESHSGAL-SRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYLTFRCS 410 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~ 410 (498)
..++.|++||+....... .... . ....+..+.|+ |+|+++++++ .++.|.+||+.++..........
T Consensus 195 ~~~~~v~v~d~~~~~~~~~~~~~-----~-~~~~~~~~~~s-----pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~ 263 (331)
T 3u4y_A 195 LIGNSIGILETQNPENITLLNAV-----G-TNNLPGTIVVS-----RDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH 263 (331)
T ss_dssp TTTTEEEEEECSSTTSCEEEEEE-----E-CSSCCCCEEEC-----TTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCCeEEEEECCCCcccceeeec-----c-CCCCCceEEEC-----CCCCEEEEEEcCCCEEEEEECCCCceeeeccccc
Confidence 578999999987543200 1111 1 12334445544 9999776655 57789999997653211110000
Q ss_pred e-ccCCc-ee-eeEEEEeeeeeccCCCEEEEEeC-CCcEEEEECCCCC
Q 010871 411 L-KLAPR-VH-SIRASFCPLLSLEKGEYIVAGSE-DSNVYFYDLAKPK 454 (498)
Q Consensus 411 ~-~~~~~-~~-~~~~~~~~~~~~~~~~~l~~gs~-dg~I~iwd~~~~~ 454 (498)
. ..... .. .....|+ ++|++|++++. ++.|.+||+....
T Consensus 264 ~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 264 GLLIDPRPLFGANQMALN-----KTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CCCCCCGGGTTCCCEEEC-----TTSSEEEEEETTTTEEEEEETTSCE
T ss_pred ccccCCCCcccccceEEC-----CCCCEEEEecCCCCcEEEEEecCCc
Confidence 0 00010 00 0112455 49998866655 5699999998743
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=3e-20 Score=203.54 Aligned_cols=280 Identities=10% Similarity=0.035 Sum_probs=209.9
Q ss_pred eeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 181 CIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 181 ~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
..+.+|.+.+.++.|++ + .++++++.||.+.||.+...+.....+..|. .+..++|+|+|++|+++. ++.|.+||+
T Consensus 197 ~~l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~ 272 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNP 272 (1045)
T ss_dssp EEEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECT
T ss_pred EECcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecC
Confidence 34588999999999998 5 6777888899999998765445566676665 467789999999988874 889999999
Q ss_pred CCCcEEEEEecCC------------CeEEEEEE-cCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCC-CeEEEEEcCCC
Q 010871 261 TKGDCIRVIYGVS------------SQLCIRFH-PVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDS-EVTSMDHDHTG 326 (498)
Q Consensus 261 ~~~~~~~~~~~~~------------~v~~i~~~-~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~i~~l~~~~~~ 326 (498)
...+ +..+..+. .+..++|+ |++ ..|++++ ++.|.+|++.+++......+.. .+..++|+ +|
T Consensus 273 ~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 273 DTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp TTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SE
T ss_pred CceE-eeeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CC
Confidence 5444 33544422 47799999 965 4555554 7899999998887665445666 89999999 99
Q ss_pred CEEEEEcCCCeEE-EEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccccccee
Q 010871 327 QLLFCGDAQGCIY-SISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYL 405 (498)
Q Consensus 327 ~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~ 405 (498)
+.|+.++.++.++ +|++....... ...+...+..+.|+ |+|++|++++.++.|++||+.++.....
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~~~~~--------l~~~~~~~~~~~~S-----pDG~~la~~~~~~~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTGKAEK--------FEENLGNVFAMGVD-----RNGKFAVVANDRFEIMTVDLETGKPTVI 415 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEE--------CCCCCCSEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CeEEEEECCCceEEEEECCCCCceE--------ecCCccceeeeEEC-----CCCCEEEEECCCCeEEEEECCCCceEEe
Confidence 9999888888888 88876432111 12444556666655 9999999999999999999986532111
Q ss_pred eEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC----------cEEEEECCCCCccceeeecCCCCCeEEEEEcC
Q 010871 406 TFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS----------NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH 475 (498)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg----------~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp 475 (498)
.......+. ...|+| ||++|++++.++ .|++||+.+++ +..+..|...+..++|+|
T Consensus 416 ----~~~~~~~v~--~~~~Sp-----DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 416 ----ERSREAMIT--DFTISD-----NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDA 481 (1045)
T ss_dssp ----EECSSSCCC--CEEECT-----TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBEEEEEECT
T ss_pred ----ccCCCCCcc--ceEECC-----CCCeEEEEecCccccccCCCCCeEEEEECCCCc---EEEeeCCCcccCCceEcC
Confidence 111222222 235665 999999887654 89999999854 567778888899999999
Q ss_pred CCCEEEEEeCCCeEEEeecC
Q 010871 476 GENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 476 ~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+|++|++++.++...+|+..
T Consensus 482 dG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 482 DSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp TSCEEEEEESCCCCCEECSS
T ss_pred CCCEEEEEecccCCcCcchh
Confidence 99999999998888888753
No 144
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=9.1e-20 Score=179.52 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=149.9
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCC-------C--ceeE-----EeecCCCCeEEEEEccCCCEEE----EE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDP-------P--KVIK-----LLNGHSKDVTDFDFSSNNQYIA----SS 249 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~-------~--~~~~-----~~~~h~~~V~~l~~s~~~~~l~----s~ 249 (498)
..++++++++ .+.+|++|+.|+ ++||+...- . .... ....|...|.+++|+|++++|+ ++
T Consensus 37 ~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 4578999999 888999999988 899875420 0 0111 1123667899999999999999 78
Q ss_pred eCCCcEEEEECCCC--------cE---EEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCC
Q 010871 250 SMDKTVRVWELTKG--------DC---IRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSE 316 (498)
Q Consensus 250 s~dg~v~iwd~~~~--------~~---~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~ 316 (498)
+.|++|+|||+.++ +. +..+.+| ..+.+++|+|+++.+|++++.||+|++||++++..+... .|...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 89999999998754 22 3444445 578999999987889999999999999999998665444 57889
Q ss_pred eEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCC-----
Q 010871 317 VTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDG----- 390 (498)
Q Consensus 317 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg----- 390 (498)
|.+++|+|+|++|++|+.||.|++||++. ...............|...+.++.|. +++.++++.+ .||
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~v~w~-----~~~~~l~~~~~~dg~~~~~ 268 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEKKVIPCPPFYESDHPVRVLDVLWI-----GTYVFAIVYAAADGTLETS 268 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTC-CEEEEECCCTTCCTTSCEEEEEEEEE-----ETTEEEEEEEETTCCSSSC
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccCC-cccccccCCcccCCCCceeEEEEEEe-----cCceEEEEEccCCCccCCC
Confidence 99999999999999999999999999872 11111111100011234467777776 6777665533 443
Q ss_pred -cEEEEEcccc
Q 010871 391 -NLSFFSVALE 400 (498)
Q Consensus 391 -~i~iwd~~~~ 400 (498)
.+++|++...
T Consensus 269 ~~v~i~~l~~~ 279 (434)
T 2oit_A 269 PDVVMALLPKK 279 (434)
T ss_dssp CEEEEEECCCT
T ss_pred CceEEEEeccC
Confidence 3899999854
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=2.8e-20 Score=196.73 Aligned_cols=282 Identities=9% Similarity=0.097 Sum_probs=192.1
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc--eeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK--VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDC 265 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 265 (498)
..|.+++||| +|++|++++. +.|++||+.+ +. ....+..|...+.+++|+|||++|++++ ++.|.+||+.+++.
T Consensus 109 ~~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~-~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 109 TGIVDYQWSP-DAQRLLFPLG-GELYLYDLKQ-EGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ 184 (741)
T ss_dssp EESCCCEECT-TSSEEEEEET-TEEEEEESSS-CSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred cCcceeEECC-CCCEEEEEeC-CcEEEEECCC-CCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence 3478999999 9999999987 9999999987 31 3455777888999999999999999987 46899999998877
Q ss_pred EEEEecCCC-----------------eEEEEEEcCCCcEEEEEeCCC---------------------------------
Q 010871 266 IRVIYGVSS-----------------QLCIRFHPVNNNFLSVGNANK--------------------------------- 295 (498)
Q Consensus 266 ~~~~~~~~~-----------------v~~i~~~~~~~~~l~~g~~dg--------------------------------- 295 (498)
......+.. +..+.|+|++.. |++++.|+
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 655444332 367999997654 44444443
Q ss_pred cEEEEEcCC-CcEEEEe---ecCCCeEEEEEcCCCCEEEEEcC-----CCeEEEEEccCCcccccccccccccCCCccce
Q 010871 296 EITVFNFST-GRIIKKL---VVDSEVTSMDHDHTGQLLFCGDA-----QGCIYSISMESHSGALSRSHRHRTTGKRKCPV 366 (498)
Q Consensus 296 ~i~iwd~~~-~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i 366 (498)
.|.+||+.+ ++..... .+...+..++| |+|+.|+++.. +..|++||+............ .......+
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---~~~~~~~~ 339 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET---SPTWVPLH 339 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE---CSSCCCCC
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC---CCCcCCcC
Confidence 788999988 8765544 35677999999 99999887653 567999988754322211100 00000122
Q ss_pred eeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEE-EEeeeeeccCCCEEEE-EeCCC-
Q 010871 367 TTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRA-SFCPLLSLEKGEYIVA-GSEDS- 443 (498)
Q Consensus 367 ~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~-gs~dg- 443 (498)
..+. ++|+|+++++++.||.+++|.+..... .......... .... .|+| +|+.|+. ++.++
T Consensus 340 ~~~~-----~spdg~~~~~~~~~g~~~l~~~~~~~~----~~~l~~~~~~--v~~~~~~s~-----dg~~l~~~~~~~~~ 403 (741)
T 2ecf_A 340 NSLR-----FLDDGSILWSSERTGFQHLYRIDSKGK----AAALTHGNWS--VDELLAVDE-----KAGLAYFRAGIESA 403 (741)
T ss_dssp SCCE-----ECTTSCEEEEECTTSSCEEEEECSSSC----EEESCCSSSC--EEEEEEEET-----TTTEEEEEECSSCT
T ss_pred CceE-----ECCCCeEEEEecCCCccEEEEEcCCCC----eeeeeecceE--EEeEeEEeC-----CCCEEEEEEeCCCC
Confidence 3444 449999999999999888888763211 1111111111 1122 3555 9987755 44455
Q ss_pred -cEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC----CeEEEeecCC
Q 010871 444 -NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY----GIVIVWKRAK 496 (498)
Q Consensus 444 -~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D----g~i~iW~~~~ 496 (498)
.++||++.... .....+.. ...+..++|+||+++|+....+ +.+.+|+..+
T Consensus 404 ~~~~l~~~~~~g-~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 404 RESQIYAVPLQG-GQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp TCBEEEEEETTC-CCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred ceEEEEEEEcCC-CCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 89999986421 23445554 6678899999999988766443 5688888653
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=1.2e-18 Score=167.79 Aligned_cols=280 Identities=10% Similarity=0.102 Sum_probs=176.0
Q ss_pred CEEEEEe----CCCcEEEEEcCCC-CceeEEeecCCCCeEEEEEccCCCEEEEEeCC----CcEEEEECCC--CcE--EE
Q 010871 201 DLLAYGA----SDGTLTVCTVSDP-PKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD----KTVRVWELTK--GDC--IR 267 (498)
Q Consensus 201 ~~lasg~----~dg~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d----g~v~iwd~~~--~~~--~~ 267 (498)
.+++.|+ .++.|.+|.++.. ++.......+...+..++|+|++++|++++.+ +.|.+|++.. ++. +.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 3455553 3578999987532 33222221277788899999999999999886 7999998875 432 33
Q ss_pred EEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe----ec-----------CCCeEEEEEcCCCCEEEE
Q 010871 268 VIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL----VV-----------DSEVTSMDHDHTGQLLFC 331 (498)
Q Consensus 268 ~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~-----------~~~i~~l~~~~~~~~l~~ 331 (498)
....+ ..+..+++ ++..++++...++.|.+|++.....+..+ .+ ...+.+++|+|+|+++++
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~ 171 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA 171 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence 33323 35666777 45545555557899999999754332211 11 223588999999996655
Q ss_pred E-cCCCeEEEEEccCCcc----c-cccc-ccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccc
Q 010871 332 G-DAQGCIYSISMESHSG----A-LSRS-HRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQG 403 (498)
Q Consensus 332 ~-~~dg~i~i~d~~~~~~----~-~~~~-~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~ 403 (498)
+ ..++.|.+|+++.... . +... ...............+.| +|+|+++++++ .++.|.+|++..+...
T Consensus 172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----spdg~~l~v~~~~~~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIF-----NSDGKFAYLINEIGGTVIAFRYADGMLD 246 (361)
T ss_dssp EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEE-----CTTSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEE-----cCCCCEEEEEcCCCCeEEEEEecCCceE
Confidence 4 4588999999876553 1 1110 000001122233444444 49999888777 6899999999743211
Q ss_pred eeeEeEeeccCC-ceeeeEEEEeeeeeccCCCEEEEEeCC--CcEEEEECC--CCCccceeeecCCCCCeEEEEEcCCCC
Q 010871 404 YLTFRCSLKLAP-RVHSIRASFCPLLSLEKGEYIVAGSED--SNVYFYDLA--KPKHSCVNKLQGHRFPVVAVAWNHGEN 478 (498)
Q Consensus 404 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~gs~d--g~I~iwd~~--~~~~~~~~~~~~h~~~V~~l~~sp~~~ 478 (498)
. ......... ......+.|+| +|++|+++..+ +.|.+|++. ++....+..+.. ...+.+++|+|+|+
T Consensus 247 ~--~~~~~~~~~~~~~~~~i~~sp-----dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~ 318 (361)
T 3scy_A 247 E--IQTVAADTVNAQGSGDIHLSP-----DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGK 318 (361)
T ss_dssp E--EEEEESCSSCCCCEEEEEECT-----TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSC
T ss_pred E--eEEEecCCCCCCCcccEEECC-----CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCC
Confidence 1 111111111 11122334554 99998776664 899999996 444444555554 56788999999999
Q ss_pred EEEEEe-CCCeEEEeecC
Q 010871 479 LLASSD-LYGIVIVWKRA 495 (498)
Q Consensus 479 ~l~s~~-~Dg~i~iW~~~ 495 (498)
+|++++ .++.|.+|+++
T Consensus 319 ~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 319 YLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEE
Confidence 888887 67999997665
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=1.1e-19 Score=173.61 Aligned_cols=274 Identities=12% Similarity=0.065 Sum_probs=178.1
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCC-CCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCcEEEEE
Q 010871 192 ILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHS-KDVTDFDFSSNNQYIA-SSSMDKTVRVWELTKGDCIRVI 269 (498)
Q Consensus 192 ~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~ 269 (498)
.+++++ ++.++++++.++.|.+||+.+ ++....+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.+..+
T Consensus 4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKA-GHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCT-TCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccC-CCEEEEEeCCCCeEEEEECCC-CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 356676 888999999999999999988 67777776443 2578999999998665 5557899999999999988877
Q ss_pred ecCC-------CeEEEEEEcCCCcEEEEEeC------------CCcEEEEEcCCCc---EEEEeecCCCeEEEEEcCCCC
Q 010871 270 YGVS-------SQLCIRFHPVNNNFLSVGNA------------NKEITVFNFSTGR---IIKKLVVDSEVTSMDHDHTGQ 327 (498)
Q Consensus 270 ~~~~-------~v~~i~~~~~~~~~l~~g~~------------dg~i~iwd~~~~~---~~~~~~~~~~i~~l~~~~~~~ 327 (498)
.... .+..++|+|++ +++++++. ++.|.+||+.+++ .+..+.+...+.+++|+|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred EcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 7533 26688999966 45555554 4899999998854 334455666789999999999
Q ss_pred EEEEEcCCCeEEEEEccCCcccccccccccccC-------------CCccceeeEEEeEeeEcCCCc-----------EE
Q 010871 328 LLFCGDAQGCIYSISMESHSGALSRSHRHRTTG-------------KRKCPVTTVQYRSFSLLAGGP-----------VL 383 (498)
Q Consensus 328 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~s~~~~-----------~l 383 (498)
+++++. .|++||+................. ....... .....+.+++++. ++
T Consensus 161 -l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 161 -LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF-SMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp -EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE-EEEEEEEEC-------CCCEEEEEEE
T ss_pred -EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE-EeeeeeeecCCCcCCccccccceeEE
Confidence 555543 499998865432211110000000 0000000 0001112222221 11
Q ss_pred EEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeecc-CCCEEEEEeCCCcEEEEECCCCCccceeeec
Q 010871 384 LTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLE-KGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ 462 (498)
Q Consensus 384 ~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~ 462 (498)
.....++.+++|++.. ... ....+.+++ ++++++++ ++.|++||+.+++ .+..+.
T Consensus 237 ~~~~~~~~~~~~~~~~-------------~~~-------~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~--~~~~~~ 292 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFAD-------------LTE-------LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK--LIKAAN 292 (349)
T ss_dssp EEETTTCCEEEEEEEE-------------CSS-------CEEEEEECSSCTTEEEEE--ESEEEEEETTTTE--EEEEEE
T ss_pred EEeccCCcEEeccccc-------------CCC-------cceeeEecCCCCCEEEEE--cCeEEEEECccCe--EEEEEc
Confidence 1223344455554421 111 122344457 89999888 8899999999854 444444
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 463 GHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 463 ~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
. ...+.+++|+|++++|++++.++.|.+||++++
T Consensus 293 ~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 293 L-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp C-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred C-CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 3 345789999999998888888999999998764
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=7.9e-20 Score=192.23 Aligned_cols=281 Identities=10% Similarity=0.047 Sum_probs=188.0
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCcee-EEeecCC-----------------CCeEEEEEccCCCEEEEEeC
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVI-KLLNGHS-----------------KDVTDFDFSSNNQYIASSSM 251 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~-~~~~~h~-----------------~~V~~l~~s~~~~~l~s~s~ 251 (498)
+..+.|. ++.+++++.|+ | +||+.+ ++.+ ..+..|. ..|.+++|+|| +.++.+.
T Consensus 28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~t-g~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~- 99 (706)
T 2z3z_A 28 VVGLQWM---GDNYVFIEGDD-L-VFNKAN-GKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT- 99 (706)
T ss_dssp CTTCEEE---TTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-
T ss_pred CCCCcCc---CCeEEEEeCCc-E-EEECCC-CcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-
Confidence 4456776 56777777888 8 999988 4442 3333332 56999999999 6666554
Q ss_pred CCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC-----CcEEEEeecCCC----------
Q 010871 252 DKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST-----GRIIKKLVVDSE---------- 316 (498)
Q Consensus 252 dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~-----~~~~~~~~~~~~---------- 316 (498)
++.|++||+.+++..........+..++|+|++. .|+.+ .++.|++||+.+ ++..........
T Consensus 100 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGD-RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ 177 (706)
T ss_dssp TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSS-EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred CCEEEEEECCCCceEEccCCcccccCCcCCCCCC-EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence 5999999999987766655556777899999764 55554 679999999998 776654432222
Q ss_pred -----eEEEEEcCCCCEEEEEc---------------------------------CCCeEEEEEccCCcccccccccccc
Q 010871 317 -----VTSMDHDHTGQLLFCGD---------------------------------AQGCIYSISMESHSGALSRSHRHRT 358 (498)
Q Consensus 317 -----i~~l~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~ 358 (498)
+.+++|+|+|++|++++ .+..|++||+..........
T Consensus 178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~----- 252 (706)
T 2z3z_A 178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT----- 252 (706)
T ss_dssp GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC-----
T ss_pred hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc-----
Confidence 48899999999999887 45679999986543221110
Q ss_pred cCCCccceeeEEEeEeeEcCCCcEEEEEEcCC-----cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeecc--
Q 010871 359 TGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG-----NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLE-- 431 (498)
Q Consensus 359 ~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 431 (498)
...+...+..+.|+ |+|+.|++++.++ .|.+||+.++........ ........ ....+.+++
T Consensus 253 ~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~--~~~~~~~~----~~~~~~~sp~~ 321 (706)
T 2z3z_A 253 GEPKEKFLTNLSWS-----PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV--ETDKHYVE----PLHPLTFLPGS 321 (706)
T ss_dssp CSCTTCEEEEEEEC-----TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE--EECSSCCC----CCSCCEECTTC
T ss_pred CCCCceeEeeEEEE-----CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE--ccCCCeEC----ccCCceeecCC
Confidence 12345566666665 9999999988876 899999876521111111 01111000 012344557
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEE-EEEcCCCCEEEEEeC-CC----eEEEeecCCC
Q 010871 432 KGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVA-VAWNHGENLLASSDL-YG----IVIVWKRAKT 497 (498)
Q Consensus 432 ~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~-l~~sp~~~~l~s~~~-Dg----~i~iW~~~~~ 497 (498)
+|+++++++.|+.++||.+... ...+..+..|...+.. ++|+|+++.|+.++. ++ .|..|+++++
T Consensus 322 dg~~l~~~~~~g~~~l~~~~~~-~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 322 NNQFIWQSRRDGWNHLYLYDTT-GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp SSEEEEEECTTSSCEEEEEETT-SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred CCEEEEEEccCCccEEEEEECC-CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 8999999999999999987621 2346677778888887 799999987766554 44 5666676543
No 149
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=3.8e-19 Score=172.88 Aligned_cols=285 Identities=9% Similarity=0.045 Sum_probs=189.8
Q ss_pred eeecccccEEE-----EEEecCCCCEEEEEeC-CCc--EEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCC
Q 010871 182 IFDQCKAAVTI-----LKFGHMSSDLLAYGAS-DGT--LTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDK 253 (498)
Q Consensus 182 ~~~~h~~~V~~-----v~~sp~~~~~lasg~~-dg~--i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg 253 (498)
.+..|...+.. .+|+| +|++|+.++. +|. |.+||+.+ ++......+|...+..+.|+|||+.|+.++.++
T Consensus 25 ~lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~-g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNT-QVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTT-CEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred EecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCC-CceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 34455555555 88999 8999988887 674 88888877 666666666766666788999999999999999
Q ss_pred cEEEEECCCCcEEEEEecCCCeE-EE--EEEcCCCcEEEEE----------------------eCCCcEEEEEcCCCcEE
Q 010871 254 TVRVWELTKGDCIRVIYGVSSQL-CI--RFHPVNNNFLSVG----------------------NANKEITVFNFSTGRII 308 (498)
Q Consensus 254 ~v~iwd~~~~~~~~~~~~~~~v~-~i--~~~~~~~~~l~~g----------------------~~dg~i~iwd~~~~~~~ 308 (498)
.|.+||+.+++....+..+.... .. .+++++ .+++.. ..+..|.+||+.+++..
T Consensus 103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred eEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 99999999998877776665432 23 346754 455422 23468999999999877
Q ss_pred EEeecCCCeEEEEEcC-CCCEEEEEcCC------CeEEEEEccCCcccccccccccccCCCc--cceeeEEEeEeeEcCC
Q 010871 309 KKLVVDSEVTSMDHDH-TGQLLFCGDAQ------GCIYSISMESHSGALSRSHRHRTTGKRK--CPVTTVQYRSFSLLAG 379 (498)
Q Consensus 309 ~~~~~~~~i~~l~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~s~~ 379 (498)
....+...+..++|+| +|+.|+....+ ..|++++......... ..+. ..+.... ++|+
T Consensus 182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l--------~~~~~~~~~~~~~-----~spd 248 (388)
T 3pe7_A 182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV--------KTHAEGESCTHEF-----WVPD 248 (388)
T ss_dssp EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES--------CCCCTTEEEEEEE-----ECTT
T ss_pred EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe--------eeCCCCcccccce-----ECCC
Confidence 6667778899999999 99988776653 3677777654322111 1111 2344444 4599
Q ss_pred CcEEEEEEc-CC----cEEEEEccccccceeeEeEeeccCCceeee----EEEEeeeeeccCCCEEEEE---------eC
Q 010871 380 GPVLLTCTQ-DG----NLSFFSVALEIQGYLTFRCSLKLAPRVHSI----RASFCPLLSLEKGEYIVAG---------SE 441 (498)
Q Consensus 380 ~~~l~t~s~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~g---------s~ 441 (498)
|+.|+..+. ++ .|.+||+.++....+. ......... ...|+| ||+.|+.. ..
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-----~~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~~~~~~ 318 (388)
T 3pe7_A 249 GSALVYVSYLKGSPDRFIYSADPETLENRQLT-----SMPACSHLMSNYDGSLMVG-----DGSDAPVDVQDDSGYKIEN 318 (388)
T ss_dssp SSCEEEEEEETTCCCEEEEEECTTTCCEEEEE-----EECCEEEEEECTTSSEEEE-----EECCC------------CC
T ss_pred CCEEEEEecCCCCCcceEEEEecCCCceEEEE-----cCCCceeeeecCCCCeEcc-----CCCcceeEeeeccccccCC
Confidence 997765543 22 3999999865321111 111100000 013555 88887754 44
Q ss_pred CCcEEEEECCCCCccceeeecCCCC-----------CeEEEEEcCCCCEEEEEe-CCCeEEEeecC
Q 010871 442 DSNVYFYDLAKPKHSCVNKLQGHRF-----------PVVAVAWNHGENLLASSD-LYGIVIVWKRA 495 (498)
Q Consensus 442 dg~I~iwd~~~~~~~~~~~~~~h~~-----------~V~~l~~sp~~~~l~s~~-~Dg~i~iW~~~ 495 (498)
+..|++||+.+++ +..+..|.. .+.+++|+|||+.|+.++ .+|...||.++
T Consensus 319 ~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 319 DPFLYVFNMKNGT---QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCEEEEEETTTTE---EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCEEEEEeccCCc---eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 6689999999854 344555554 578899999999887665 56777777643
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=2.1e-19 Score=167.20 Aligned_cols=239 Identities=12% Similarity=0.116 Sum_probs=167.0
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecC-CCCeEEEEEccCCCEEEEEe--CCCcEEEE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGH-SKDVTDFDFSSNNQYIASSS--MDKTVRVW 258 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~s--~dg~v~iw 258 (498)
.+..|.+.|.+++|+| ++++|++++ ++.|.+||+.+.++....+.+| ...|.+++|+|++++|++++ .++.+.||
T Consensus 36 ~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred eeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence 4566788999999999 999999987 7899999998623444555555 47889999999999999998 33455565
Q ss_pred EC--CCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEc--CCCcEEEEeecCCCeEEEEEcCCCCEEEEEc-
Q 010871 259 EL--TKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNF--STGRIIKKLVVDSEVTSMDHDHTGQLLFCGD- 333 (498)
Q Consensus 259 d~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~--~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~- 333 (498)
.+ .+++ ...+..+..+..++|+|++..+++++..++.+.+|++ .+++......+...+.+++|+|+++.|++++
T Consensus 114 ~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 192 (297)
T 2ojh_A 114 LLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS 192 (297)
T ss_dssp EEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC
T ss_pred EEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec
Confidence 54 4444 4555566678899999987666768889999999985 4455544446778899999999999877665
Q ss_pred CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC-----------CcEEEEEcccccc
Q 010871 334 AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD-----------GNLSFFSVALEIQ 402 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d-----------g~i~iwd~~~~~~ 402 (498)
.++.+.+|+++........ ...+...+..+.|+ |++++|++++.+ +.|.+||+..+..
T Consensus 193 ~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~s-----~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 193 RTGQMQIWRVRVDGSSVER------ITDSAYGDWFPHPS-----PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp TTSSCEEEEEETTSSCEEE------CCCCSEEEEEEEEC-----TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CCCCccEEEECCCCCCcEE------EecCCcccCCeEEC-----CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 5889999988643332211 23344455555554 999999988876 5699999876432
Q ss_pred ceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC
Q 010871 403 GYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS 443 (498)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg 443 (498)
... .........+.. ..|+| ++++|++++.+.
T Consensus 262 ~~~--~~~~~~~~~~~~--~~~sp-----dg~~l~~~~~~~ 293 (297)
T 2ojh_A 262 ETL--FDLFGGQGTMNS--PNWSP-----DGDEFAYVRYFP 293 (297)
T ss_dssp EEE--EEEEESTTTSCS--CCBCT-----TSSEEEEEEECC
T ss_pred eee--eccCCCCccccc--ceECC-----CCCEEEEEEecc
Confidence 111 111111222222 24554 999988887653
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=7.8e-20 Score=200.26 Aligned_cols=285 Identities=12% Similarity=0.080 Sum_probs=204.9
Q ss_pred ccccEEEEEEe-cCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCC-CeEEEEEccCCCEEEEEeCCCcEE-EEECCC
Q 010871 186 CKAAVTILKFG-HMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSK-DVTDFDFSSNNQYIASSSMDKTVR-VWELTK 262 (498)
Q Consensus 186 h~~~V~~v~~s-p~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~s~s~dg~v~-iwd~~~ 262 (498)
|...|.+++|+ | +|++||+++ ++.|.+|++.. +. ...+..|.. .+.+++|+ +|+.|++++.++.+. +|++.+
T Consensus 294 ~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~-~~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 294 SIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSG-TY-VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT 368 (1045)
T ss_dssp ECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTS-SB-EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred cccccceeeecCC-CCCEEEEEE-cCEEEEEcCCC-Cc-eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence 55679999999 9 899888888 78999999986 43 344677877 89999999 999999999888888 899988
Q ss_pred CcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCC----
Q 010871 263 GDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQG---- 336 (498)
Q Consensus 263 ~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg---- 336 (498)
++..... .+ ..+..++|+|++ ..|++++.++.|++||+.+++..... .+...+.+++|+|+|++|++++.++
T Consensus 369 ~~~~~l~-~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~ 446 (1045)
T 1k32_A 369 GKAEKFE-ENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET 446 (1045)
T ss_dssp CCEEECC-CCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred CCceEec-CCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccc
Confidence 7655443 44 578899999954 67888889999999999999888777 5778889999999999998877644
Q ss_pred ------eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccc----eee
Q 010871 337 ------CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQG----YLT 406 (498)
Q Consensus 337 ------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~----~~~ 406 (498)
.|++||+.... .. ....+...+..+.|+ |+|++|++++.++...+|+....... ...
T Consensus 447 ~~~~~~~i~l~d~~~g~--~~------~l~~~~~~~~~~~~s-----pdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~ 513 (1045)
T 1k32_A 447 DGYVMQAIHVYDMEGRK--IF------AATTENSHDYAPAFD-----ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP 513 (1045)
T ss_dssp CSCCEEEEEEEETTTTE--EE------ECSCSSSBEEEEEEC-----TTSCEEEEEESCCCCCEECSSSSCEECCSCBEE
T ss_pred cCCCCCeEEEEECCCCc--EE------EeeCCCcccCCceEc-----CCCCEEEEEecccCCcCcchhccccccccCcee
Confidence 89999987533 11 123444555555554 99999999999888888875421100 000
Q ss_pred EeEe----------------------eccCC---ceee---eEEEEeeeeeccCCCEEEE-------------EeCCCcE
Q 010871 407 FRCS----------------------LKLAP---RVHS---IRASFCPLLSLEKGEYIVA-------------GSEDSNV 445 (498)
Q Consensus 407 ~~~~----------------------~~~~~---~~~~---~~~~~~~~~~~~~~~~l~~-------------gs~dg~I 445 (498)
.... ..... .... ....+..+.++++|.++++ ......|
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l 593 (1045)
T 1k32_A 514 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 593 (1045)
T ss_dssp EEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEE
T ss_pred EEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceE
Confidence 0000 00000 0001 0112334445568987775 1224578
Q ss_pred EEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 446 YFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 446 ~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
++||+.+++. ..+. ..+.+++|+|||+.|++++.+ .|++|+++++
T Consensus 594 ~~~d~~~~~~---~~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~ 638 (1045)
T 1k32_A 594 LKYDVKTRKV---TEVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEK 638 (1045)
T ss_dssp EEEETTTCCE---EEEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSC
T ss_pred EEEECCCCcE---EEee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccC
Confidence 8999988653 2332 568899999999999999866 8999999764
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=2e-18 Score=165.24 Aligned_cols=244 Identities=14% Similarity=0.111 Sum_probs=177.2
Q ss_pred CCCCeEEEEEccCCCEEEEEeC-------CCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEc
Q 010871 230 HSKDVTDFDFSSNNQYIASSSM-------DKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNF 302 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~-------dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~ 302 (498)
....+..++|+|++++|++++. ++.|.+||..+++.+..+.....+..++|+|++..+++++..++.|.+||.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3456889999999998888774 468999999999999998877778899999987767777777899999999
Q ss_pred CCCcEEEEeecCC----------CeEEEEEcCCCCEEEEEc--CCCeEEEEEccCCcccccccccccccCCCccceeeEE
Q 010871 303 STGRIIKKLVVDS----------EVTSMDHDHTGQLLFCGD--AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQ 370 (498)
Q Consensus 303 ~~~~~~~~~~~~~----------~i~~l~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 370 (498)
.+++.+..+.... .+.+++|+|+++.+++++ .++.|++||......... . ..+...+..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~--~-----~~~~~~~~~~~ 191 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA--I-----QNTGKMSTGLA 191 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE--E-----CCCCTTCCCCE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE--e-----cCCCCccceEE
Confidence 9999888875422 278899999999877765 478899999865432211 1 11223345555
Q ss_pred EeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccC-CceeeeEEEEeeeeeccCCCEEEEEeC-CCcEEEE
Q 010871 371 YRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLA-PRVHSIRASFCPLLSLEKGEYIVAGSE-DSNVYFY 448 (498)
Q Consensus 371 ~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~gs~-dg~I~iw 448 (498)
+. |+++++++++.++.|.+||..+... ......... .........|+| +|+++++++. ++.|.+|
T Consensus 192 ~s-----~dg~~l~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~s~-----dg~~l~~~~~~~~~v~~~ 258 (353)
T 3vgz_A 192 LD-----SEGKRLYTTNADGELITIDTADNKI---LSRKKLLDDGKEHFFINISLDT-----ARQRAFITDSKAAEVLVV 258 (353)
T ss_dssp EE-----TTTTEEEEECTTSEEEEEETTTTEE---EEEEECCCSSSCCCEEEEEEET-----TTTEEEEEESSSSEEEEE
T ss_pred EC-----CCCCEEEEEcCCCeEEEEECCCCeE---EEEEEcCCCCCCcccceEEECC-----CCCEEEEEeCCCCEEEEE
Confidence 54 9999999999999999999876522 111111111 111222335555 8987777665 4899999
Q ss_pred ECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEeecCCC
Q 010871 449 DLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSD-LYGIVIVWKRAKT 497 (498)
Q Consensus 449 d~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~i~iW~~~~~ 497 (498)
|+.+++ .+..+..+. ..+++|+|++++|+.++ .++.|.+||+.++
T Consensus 259 d~~~~~--~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 259 DTRNGN--ILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp ETTTCC--EEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred ECCCCc--EEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 998855 445554433 25799999999665554 7899999998764
No 153
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=8.7e-19 Score=168.99 Aligned_cols=281 Identities=12% Similarity=0.105 Sum_probs=176.9
Q ss_pred EEEEEeCC--CcEEEEEcCCC-CceeE--Eee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-CCcEEEEEe--cC
Q 010871 202 LLAYGASD--GTLTVCTVSDP-PKVIK--LLN-GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT-KGDCIRVIY--GV 272 (498)
Q Consensus 202 ~lasg~~d--g~i~iwd~~~~-~~~~~--~~~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~--~~ 272 (498)
+|+.|+.. +.|.+|+++.. +.... ... ++...+..++|+|++++|++++.+ .|.+|++. +++...... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35555543 46888776421 33221 111 244578899999999999999888 89999997 777654433 22
Q ss_pred CCeEEEEEEcCCCc-EEEEEe-------------CCCcEEEEEcC-CCcEEEEee-----cCCCeEEEEEcCCCCEEEEE
Q 010871 273 SSQLCIRFHPVNNN-FLSVGN-------------ANKEITVFNFS-TGRIIKKLV-----VDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 273 ~~v~~i~~~~~~~~-~l~~g~-------------~dg~i~iwd~~-~~~~~~~~~-----~~~~i~~l~~~~~~~~l~~~ 332 (498)
..+..++|+|++.. +++++. .+|.+.+|++. .++....+. +...+.+++|+|+|++|+++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 33556888996654 344553 68999999997 466554443 45679999999999988776
Q ss_pred c-CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-CCcEEEEEccccccceeeE--e
Q 010871 333 D-AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-DGNLSFFSVALEIQGYLTF--R 408 (498)
Q Consensus 333 ~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-dg~i~iwd~~~~~~~~~~~--~ 408 (498)
+ .++.|++|+++. .+........ ....+...+..+.|+ |+|+++++++. ++.|.+|++.... +.... .
T Consensus 163 ~~~~~~v~~~~~~~-~g~~~~~~~~-~~~~~g~~p~~~~~s-----pdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~ 234 (365)
T 1jof_A 163 DLTANKLWTHRKLA-SGEVELVGSV-DAPDPGDHPRWVAMH-----PTGNYLYALMEAGNRICEYVIDPAT-HMPVYTHH 234 (365)
T ss_dssp ETTTTEEEEEEECT-TSCEEEEEEE-ECSSTTCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTT-CCEEEEEE
T ss_pred cCCCCEEEEEEECC-CCCEEEeeeE-ecCCCCCCCCEeEEC-----CCCCEEEEEECCCCeEEEEEEeCCC-CcEEEccc
Confidence 5 467999999973 2222111000 001123345555554 99999988775 6899999876321 11110 1
Q ss_pred EeeccCCc----e-------eeeEEE-EeeeeeccCCCEEEEEeCCC------cEEEEECC-CCCcccee-eecCCCCCe
Q 010871 409 CSLKLAPR----V-------HSIRAS-FCPLLSLEKGEYIVAGSEDS------NVYFYDLA-KPKHSCVN-KLQGHRFPV 468 (498)
Q Consensus 409 ~~~~~~~~----~-------~~~~~~-~~~~~~~~~~~~l~~gs~dg------~I~iwd~~-~~~~~~~~-~~~~h~~~V 468 (498)
........ . ...... |+ +||++|+++..+. .|.+|++. +++...+. ....+...+
T Consensus 235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~s-----pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~ 309 (365)
T 1jof_A 235 SFPLIPPGIPDRDPETGKGLYRADVCALT-----FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG 309 (365)
T ss_dssp EEESSCTTCCCBCTTTSSBSEEEEEEEEC-----TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT
T ss_pred eEEcCCCCcCCcccccccccccccEEEEC-----CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc
Confidence 11111111 1 122334 55 4999988776432 89999996 44322111 233455567
Q ss_pred EEEEEcC---CCCEEEEEeCC-CeEEEeecCC
Q 010871 469 VAVAWNH---GENLLASSDLY-GIVIVWKRAK 496 (498)
Q Consensus 469 ~~l~~sp---~~~~l~s~~~D-g~i~iW~~~~ 496 (498)
..++|+| +|++|++++.+ +.|.+|+++.
T Consensus 310 ~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 310 HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 7899999 89999999864 9999998764
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=4.1e-18 Score=163.00 Aligned_cols=251 Identities=15% Similarity=0.213 Sum_probs=163.5
Q ss_pred cccccEEEEEEecCCCCEEEEEeC--CCcEEEEEcCCCCc--eeEEeecCCCCeEEEEEccCCCEEEEEe-CCCcEEEEE
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGAS--DGTLTVCTVSDPPK--VIKLLNGHSKDVTDFDFSSNNQYIASSS-MDKTVRVWE 259 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~--dg~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~s-~dg~v~iwd 259 (498)
.+...+..++|+| ++++++++.. ++.|.+|++.+ +. .+..+..+...+..++|+|+|++|++++ .++.|.+|+
T Consensus 37 ~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 37 AATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDG-QTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEET-TEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecC-CcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 3456778899999 7774444432 68999999975 33 3445556788899999999999888887 678999999
Q ss_pred CC-CC--cEEEEEecC----------CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC-CCcEEEE--e--ecCCCeEEEE
Q 010871 260 LT-KG--DCIRVIYGV----------SSQLCIRFHPVNNNFLSVGNANKEITVFNFS-TGRIIKK--L--VVDSEVTSMD 321 (498)
Q Consensus 260 ~~-~~--~~~~~~~~~----------~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~--~--~~~~~i~~l~ 321 (498)
+. .+ ..+..+... ..+.+++|+|++. ++++...++.|.+|++. +++.... + .....+..++
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 96 33 333333322 1367899999776 77777778999999998 5544322 2 2334688999
Q ss_pred EcCCCCEEEE-EcCCCeEEEEEccCCcccccccccccccCC---CccceeeEEEeEeeEcCCCcEEE-EEEcCCcEEEEE
Q 010871 322 HDHTGQLLFC-GDAQGCIYSISMESHSGALSRSHRHRTTGK---RKCPVTTVQYRSFSLLAGGPVLL-TCTQDGNLSFFS 396 (498)
Q Consensus 322 ~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~s~~~~~l~-t~s~dg~i~iwd 396 (498)
|+|+|+++++ +..++.|.+|+++...+............. ....+..+ +++|+|++|+ +...++.|.+|+
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i-----~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAI-----RLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEE-----EECTTSCEEEEEEETTTEEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeE-----EECCCCCEEEEEeCCCCEEEEEE
Confidence 9999996555 567889999998864433221111100010 01224444 4459999875 555689999999
Q ss_pred ccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC-CcEEEEECC
Q 010871 397 VALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED-SNVYFYDLA 451 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-g~I~iwd~~ 451 (498)
+.... ........... ......+.|+| +|++|++++.+ +.|.+|++.
T Consensus 269 ~~~~g--~~~~~~~~~~~-~~~~~~~~~sp-----dg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 269 VTADG--HLTLIQQISTE-GDFPRDFDLDP-----TEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ECGGG--CEEEEEEEECS-SSCCCEEEECT-----TSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCC--cEEEeEEEecC-CCCcCeEEECC-----CCCEEEEEEcCCCcEEEEEEe
Confidence 87321 11111111110 11122335555 99988888765 899999554
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=7e-18 Score=162.34 Aligned_cols=271 Identities=12% Similarity=0.130 Sum_probs=172.6
Q ss_pred ccccEEEEEEecCCCCEEEEEeCC----CcEEEEEcCCC-Cc--eeEEeecCCCCeEEEEEccCCCEEEEEe-CCCcEEE
Q 010871 186 CKAAVTILKFGHMSSDLLAYGASD----GTLTVCTVSDP-PK--VIKLLNGHSKDVTDFDFSSNNQYIASSS-MDKTVRV 257 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~~lasg~~d----g~i~iwd~~~~-~~--~~~~~~~h~~~V~~l~~s~~~~~l~s~s-~dg~v~i 257 (498)
|...+..++|+| ++++|++++.+ +.|.+|++... +. .+.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 567788899999 89999998886 79999998763 22 23334446667788888 788777776 5789999
Q ss_pred EECCCCcEEE----EEe--cC---------CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc-------E-------E
Q 010871 258 WELTKGDCIR----VIY--GV---------SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR-------I-------I 308 (498)
Q Consensus 258 wd~~~~~~~~----~~~--~~---------~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~-------~-------~ 308 (498)
|++.....+. .+. +. ..+.+++|+|++..+++++..++.|.+|++.... . .
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 9997543221 111 11 1246799999776666666678999999987543 1 2
Q ss_pred EEeecCCCeEEEEEcCCCCEEEEEc-CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE
Q 010871 309 KKLVVDSEVTSMDHDHTGQLLFCGD-AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT 387 (498)
Q Consensus 309 ~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s 387 (498)
........+..++|+|+|+++++++ .++.|.+|++......... .......+......+. ++|+|++|+++.
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~--~~~~~~~~~~~~~~i~-----~spdg~~l~v~~ 277 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ--TVAADTVNAQGSGDIH-----LSPDGKYLYASN 277 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE--EEESCSSCCCCEEEEE-----ECTTSSEEEEEE
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE--EEecCCCCCCCcccEE-----ECCCCCEEEEEC
Confidence 2234556788999999999877766 6899999998743211111 1111122223334444 459999997777
Q ss_pred cC--CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEe-CCCcEEEEECCCCCccceeee-cC
Q 010871 388 QD--GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGS-EDSNVYFYDLAKPKHSCVNKL-QG 463 (498)
Q Consensus 388 ~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~dg~I~iwd~~~~~~~~~~~~-~~ 463 (498)
.+ +.|.+|++...... ........... ....+.|+| +|++|++++ .++.|.+|++........... ..
T Consensus 278 ~~~~~~i~v~~~~~~~g~-~~~~~~~~~g~--~~~~~~~sp-----dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~ 349 (361)
T 3scy_A 278 RLKADGVAIFKVDETNGT-LTKVGYQLTGI--HPRNFIITP-----NGKYLLVACRDTNVIQIFERDQATGLLTDIKKDI 349 (361)
T ss_dssp CSSSCEEEEEEECTTTCC-EEEEEEEECSS--CCCEEEECT-----TSCEEEEEETTTTEEEEEEECTTTCCEEECSCCE
T ss_pred CCCCCEEEEEEEcCCCCc-EEEeeEecCCC--CCceEEECC-----CCCEEEEEECCCCCEEEEEEECCCCcEeecceee
Confidence 65 89999998632111 11111111111 222335665 999888887 568999976553222222222 22
Q ss_pred CCCCeEEEEEc
Q 010871 464 HRFPVVAVAWN 474 (498)
Q Consensus 464 h~~~V~~l~~s 474 (498)
+...+.||.|.
T Consensus 350 ~~~~p~~v~~~ 360 (361)
T 3scy_A 350 KVDKPVCLKFV 360 (361)
T ss_dssp ECSSEEEEEEE
T ss_pred eCCCCeEEEEc
Confidence 45678999886
No 156
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=4e-19 Score=187.39 Aligned_cols=281 Identities=8% Similarity=0.050 Sum_probs=182.0
Q ss_pred eeecccc---cEEEEEEecCCCCEEEEEeCC---------CcEEEEEcCCCCceeEEee---cCCCCeEEEEEccCCCEE
Q 010871 182 IFDQCKA---AVTILKFGHMSSDLLAYGASD---------GTLTVCTVSDPPKVIKLLN---GHSKDVTDFDFSSNNQYI 246 (498)
Q Consensus 182 ~~~~h~~---~V~~v~~sp~~~~~lasg~~d---------g~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l 246 (498)
.+.+|.. .|.+++||| +|++||+++.+ +.|.+||+.+ ++. ..+. +|...+..++|+|||++|
T Consensus 52 ~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~~~~~~~SPdG~~l 128 (723)
T 1xfd_A 52 LIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPH-GDP-QSLDPPEVSNAKLQYAGWGPKGQQL 128 (723)
T ss_dssp EECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSS-CCC-EECCCTTCCSCCCSBCCBCSSTTCE
T ss_pred EeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCC-Cce-EeccCCccccccccccEECCCCCEE
Confidence 3455554 499999999 99999999874 7788999987 443 3333 455568999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEecC-CCe------------------EEEEEEcCCCcEEEEEeCCC------------
Q 010871 247 ASSSMDKTVRVWELTKGDCIRVIYGV-SSQ------------------LCIRFHPVNNNFLSVGNANK------------ 295 (498)
Q Consensus 247 ~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v------------------~~i~~~~~~~~~l~~g~~dg------------ 295 (498)
++++. +.|.+||+.+++.......+ ..+ .++.|+|++. .|++++.++
T Consensus 129 a~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~ 206 (723)
T 1xfd_A 129 IFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYT 206 (723)
T ss_dssp EEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCS
T ss_pred EEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccC
Confidence 99886 78999999998877666543 233 6899999764 555544332
Q ss_pred ----------------------cEEEEEcCCCcEEEEeec-------CCCeEEEEEcCCCCEEEEEcC----CCeEEEEE
Q 010871 296 ----------------------EITVFNFSTGRIIKKLVV-------DSEVTSMDHDHTGQLLFCGDA----QGCIYSIS 342 (498)
Q Consensus 296 ----------------------~i~iwd~~~~~~~~~~~~-------~~~i~~l~~~~~~~~l~~~~~----dg~i~i~d 342 (498)
.|++||+.+++....+.. ...+..++|+|+|++|++... +..|++||
T Consensus 207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 286 (723)
T 1xfd_A 207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD 286 (723)
T ss_dssp SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred CcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence 799999998886555532 467899999999998876643 35799998
Q ss_pred ccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEE--EEcCC------cEEEEE-ccccccceeeEeEeecc
Q 010871 343 MESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT--CTQDG------NLSFFS-VALEIQGYLTFRCSLKL 413 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t--~s~dg------~i~iwd-~~~~~~~~~~~~~~~~~ 413 (498)
+.......... ..+...+... ...+.++|+|+.|+. +..++ .|.+|| ...+... +...+
T Consensus 287 ~~~g~~~~~~~------~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-----~~~~l 354 (723)
T 1xfd_A 287 ATTGVCTKKHE------DESEAWLHRQ-NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND-----NIQSI 354 (723)
T ss_dssp TTTCCEEEEEE------EECSSCCCCC-CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC-----CCCBS
T ss_pred CCCCcceEEEE------eccCCEEecc-CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc-----ceeEe
Confidence 86543221110 1111112100 012344599997775 44566 466666 2322100 00011
Q ss_pred C-CceeeeE-EEEeeeeeccCCCEEEEEeCC---CcEEEEECCCCCccceeeecC---CCCCeEEEEEcCCCCEEEEEe
Q 010871 414 A-PRVHSIR-ASFCPLLSLEKGEYIVAGSED---SNVYFYDLAKPKHSCVNKLQG---HRFPVVAVAWNHGENLLASSD 484 (498)
Q Consensus 414 ~-~~~~~~~-~~~~~~~~~~~~~~l~~gs~d---g~I~iwd~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~l~s~~ 484 (498)
. ....... ..|+| +|+.|+..+.+ +.+++|++..........+.. |...+..++|+|+|++|+...
T Consensus 355 ~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 355 TSGDWDVTKILAYDE-----KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CCSSSCEEEEEEEET-----TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred ecCCeEEEeeeEEcC-----CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 1 1111111 25555 99998766655 789999987533212333443 677799999999999887653
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=7.2e-19 Score=167.07 Aligned_cols=244 Identities=8% Similarity=0.042 Sum_probs=169.1
Q ss_pred cEEEEEEecCCCCEE-EEEeCCCcEEEEEcCCCCceeEEeec-C----CCCeEEEEEccCCCEEEEEe------------
Q 010871 189 AVTILKFGHMSSDLL-AYGASDGTLTVCTVSDPPKVIKLLNG-H----SKDVTDFDFSSNNQYIASSS------------ 250 (498)
Q Consensus 189 ~V~~v~~sp~~~~~l-asg~~dg~i~iwd~~~~~~~~~~~~~-h----~~~V~~l~~s~~~~~l~s~s------------ 250 (498)
.+.+++|+| +++++ +++..++.|.+||+.+ ++....+.. + ...+.+++|+|+|++|++++
T Consensus 35 ~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 35 TPMVPMVAP-GGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCCCEEECT-TSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CccceEEcC-CCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccc
Confidence 478899999 77654 5666789999999987 666655542 2 22678899999999998886
Q ss_pred CCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEE
Q 010871 251 MDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLF 330 (498)
Q Consensus 251 ~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 330 (498)
.++.|.+||+.+++.+..+.....+..++|+|++..+ +++ ++.|.+||+.+++.+..+........+.|+|++..++
T Consensus 113 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l-~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 189 (337)
T 1pby_B 113 QPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKL-YGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW 189 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCE-EEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred cCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEE-EEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEe
Confidence 5799999999999988888877778889999976544 444 6899999999999887775332112337889988665
Q ss_pred EEcCCC------------------------eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEE
Q 010871 331 CGDAQG------------------------CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC 386 (498)
Q Consensus 331 ~~~~dg------------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~ 386 (498)
+.+..+ .|.+||+...... .. . ...+...+.++.| +|++++++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~--~---~~~~~~~~~~~~~-----s~dg~~l~~~ 258 (337)
T 1pby_B 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MR--E---VRIMDVFYFSTAV-----NPAKTRAFGA 258 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EE--E---EEECSSCEEEEEE-----CTTSSEEEEE
T ss_pred eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Ee--e---cCCCCCceeeEEE-----CCCCCEEEEe
Confidence 544332 3577877654322 10 0 1222233444444 4999999988
Q ss_pred EcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCC
Q 010871 387 TQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGH 464 (498)
Q Consensus 387 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h 464 (498)
++.|.+||+.+... . ........ ...+.|+| +|++|++++.++.|++||+.+++ .+..+..+
T Consensus 259 --~~~v~~~d~~~~~~---~--~~~~~~~~--~~~~~~s~-----dg~~l~~~~~~~~i~v~d~~~~~--~~~~~~~~ 320 (337)
T 1pby_B 259 --YNVLESFDLEKNAS---I--KRVPLPHS--YYSVNVST-----DGSTVWLGGALGDLAAYDAETLE--KKGQVDLP 320 (337)
T ss_dssp --ESEEEEEETTTTEE---E--EEEECSSC--CCEEEECT-----TSCEEEEESBSSEEEEEETTTCC--EEEEEECG
T ss_pred --CCeEEEEECCCCcC---c--ceecCCCc--eeeEEECC-----CCCEEEEEcCCCcEEEEECcCCc--EEEEEEcC
Confidence 78999999875421 1 11111222 22335555 99999999899999999999854 45555443
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=8.7e-19 Score=184.65 Aligned_cols=285 Identities=9% Similarity=0.086 Sum_probs=182.7
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCC---CeEEEEEccCCCEEEEEeC---------CCcEEEEE
Q 010871 192 ILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSK---DVTDFDFSSNNQYIASSSM---------DKTVRVWE 259 (498)
Q Consensus 192 ~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~s~---------dg~v~iwd 259 (498)
.++|+| ++.+++ .+.|+.|++||+.+ ++....+.+|.. .|.+++|+|||++|++++. ++.|++||
T Consensus 20 ~~~~s~-dg~~~~-~~~d~~i~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWIS-GQEYLH-QSADNNIVLYNIET-GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESS-SSEEEE-ECTTSCEEEEESSS-CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECC-CCeEEE-EcCCCCEEEEEcCC-CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 679999 776555 45699999999988 666666666544 4899999999999998876 78999999
Q ss_pred CCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee--cCCCe-----------------EEE
Q 010871 260 LTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV--VDSEV-----------------TSM 320 (498)
Q Consensus 260 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~i-----------------~~l 320 (498)
+.+++.+........+..++|+|++.. |+.+ .++.|++||+.+++...... +...+ .++
T Consensus 97 ~~~g~~~~~~~l~~~~~~~~~SPDG~~-la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 97 LSNGEFVRGNELPRPIQYLCWSPVGSK-LAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTTTEECCSSCCCSSBCCEEECSSTTC-EEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCCCccccceecCcccccceECCCCCE-EEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 999876311112346778999997654 5544 37899999999887754332 22222 489
Q ss_pred EEcCCCCEEEEEcCCC----------------------------------eEEEEEccCCccc-ccccccccccCCCccc
Q 010871 321 DHDHTGQLLFCGDAQG----------------------------------CIYSISMESHSGA-LSRSHRHRTTGKRKCP 365 (498)
Q Consensus 321 ~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~ 365 (498)
+|+|+|+.|++++.+. .|++||+...... ............+...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 9999999999887542 7888888654321 0000000112345556
Q ss_pred eeeEEEeEeeEcCCCcEEEEEEcCC----cEEEEE----ccccccceeeEeEeeccCCcee---eeEEEEeeeeeccCCC
Q 010871 366 VTTVQYRSFSLLAGGPVLLTCTQDG----NLSFFS----VALEIQGYLTFRCSLKLAPRVH---SIRASFCPLLSLEKGE 434 (498)
Q Consensus 366 i~~~~~~~~~~s~~~~~l~t~s~dg----~i~iwd----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 434 (498)
+..+.|+ |+++++++....+ .|.+|| +.++................+. .....|+| ||+
T Consensus 255 ~~~~~~S-----pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-----dg~ 324 (719)
T 1z68_A 255 FSWLTWV-----TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY-----DAI 324 (719)
T ss_dssp EEEEEES-----SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT-----TSS
T ss_pred EEEeEEe-----CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC-----CCC
Confidence 6666665 9988777754432 388888 5543221111000001111111 00224555 998
Q ss_pred EEEE--EeCCC--cEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEeecC
Q 010871 435 YIVA--GSEDS--NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY-----GIVIVWKRA 495 (498)
Q Consensus 435 ~l~~--gs~dg--~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-----g~i~iW~~~ 495 (498)
.|+. +..+| .|++||+.+++ ...+..+...|..+.+. +++.|+..+.+ +.+++|.++
T Consensus 325 ~l~~~~~~~~g~~~l~~~~~~~~~---~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 325 SYYKIFSDKDGYKHIHYIKDTVEN---AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp CEEEEEECTTSCEEEEEESSCSTT---CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred eEEEEEEccCCceEEEEEECCCCc---eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 6554 44555 57777776644 44566666678888777 77777666654 889999865
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=1.3e-17 Score=164.01 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=128.3
Q ss_pred cccccEEEEEEecCCCCEEE----EEeCCCcEEEEEcCCC-----C--c---eeEEeecCCCCeEEEEEccC-CCEEEEE
Q 010871 185 QCKAAVTILKFGHMSSDLLA----YGASDGTLTVCTVSDP-----P--K---VIKLLNGHSKDVTDFDFSSN-NQYIASS 249 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~la----sg~~dg~i~iwd~~~~-----~--~---~~~~~~~h~~~V~~l~~s~~-~~~l~s~ 249 (498)
.|.+.|++++|+| ++++|| +|+.|+.|+|||+.+. . + ....+.+|...|.+++|+|+ +.+|+++
T Consensus 90 ~~~~~v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred cCCCcccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 4577899999999 899999 7889999999998652 0 1 24566789999999999998 7899999
Q ss_pred eCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-c-------CCCeEEE
Q 010871 250 SMDKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-V-------DSEVTSM 320 (498)
Q Consensus 250 s~dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~-------~~~i~~l 320 (498)
+.||+|++||+.++..+....+| ..+.+++|+|+ +.+|++|+.||.|++||++ ++....+. + ...|.++
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV 246 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence 99999999999998776666655 57899999996 5788899999999999998 55555542 1 2379999
Q ss_pred EEcCCCCEEEEE-cCCC------eEEEEEccCCc
Q 010871 321 DHDHTGQLLFCG-DAQG------CIYSISMESHS 347 (498)
Q Consensus 321 ~~~~~~~~l~~~-~~dg------~i~i~d~~~~~ 347 (498)
+|++++.++++. ..+| .+++|+++...
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 999988776543 3343 38999987653
No 160
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=1e-16 Score=153.96 Aligned_cols=271 Identities=12% Similarity=0.129 Sum_probs=180.0
Q ss_pred CCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC----------CCcEEEEECCCCcEEEEEecC-----
Q 010871 208 SDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM----------DKTVRVWELTKGDCIRVIYGV----- 272 (498)
Q Consensus 208 ~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~----- 272 (498)
.|+.|.+||..+ ++.+..+..+..+ .++|+|++++|+++.. +++|.+||..+++.+..+...
T Consensus 29 ~d~~v~v~D~~t-~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 29 TESRVHVYDYTN-GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GGCEEEEEETTT-CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred ccCeEEEEECCC-CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 378999999987 6777777776655 8999999999998863 677999999999998888643
Q ss_pred --CCeEEEEEEcCCCcEEEEEe-C-CCcEEEEEcCCCcEEEE-eecCCCeEEEEEcCCC-CEEEEEcCCCeEEEEEccCC
Q 010871 273 --SSQLCIRFHPVNNNFLSVGN-A-NKEITVFNFSTGRIIKK-LVVDSEVTSMDHDHTG-QLLFCGDAQGCIYSISMESH 346 (498)
Q Consensus 273 --~~v~~i~~~~~~~~~l~~g~-~-dg~i~iwd~~~~~~~~~-~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~ 346 (498)
..+..++++|++. +|+++. . ++.|.+||+.+++.+.. +..... ..+.+.|++ ..+++.+.||.+.+|++...
T Consensus 106 ~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp BCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred cCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 3456789999764 555554 3 68999999999998888 655432 335667766 57788889999999987542
Q ss_pred cccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCC----ceeeeEE
Q 010871 347 SGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAP----RVHSIRA 422 (498)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~ 422 (498)
..................++. +.+ ++++..++..+.++.+.++|+........ ....... .......
T Consensus 184 g~~~~~~~~~~~~~~~~~~~~-~~~-----~~~g~~~~~~~~~~~v~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPIF-IAP-----ALDKDKAHFVSYYGNVYSADFSGDEVKVD---GPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCBC-SCC-----EECSSEEEEEBTTSEEEEEECSSSSCEEE---EEEESCCHHHHHTTCEEC
T ss_pred CcEeeeccccceEcCCCCceE-EEe-----cccCCEEEEEeCCCeEEEEEecCCCceec---ccccccCccccccccccC
Confidence 211100000000111122221 111 25677777778899999999864321111 1100000 0000000
Q ss_pred EEeeeeeccCCCEEEEEeC-----------CCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 010871 423 SFCPLLSLEKGEYIVAGSE-----------DSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIV 491 (498)
Q Consensus 423 ~~~~~~~~~~~~~l~~gs~-----------dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~i 491 (498)
.+..+.++++++.++++.. .+.|.+||+.+. +.+..+..+. +.+|+|+|+|++|++++. +.|.+
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEE
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEE
Confidence 0111233348777776543 347999999984 4678888776 999999999999998887 99999
Q ss_pred eecCCC
Q 010871 492 WKRAKT 497 (498)
Q Consensus 492 W~~~~~ 497 (498)
||.+++
T Consensus 330 ~D~~t~ 335 (361)
T 2oiz_A 330 YDISQP 335 (361)
T ss_dssp EECSSS
T ss_pred EECCCC
Confidence 998875
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=1.6e-16 Score=153.00 Aligned_cols=254 Identities=11% Similarity=0.111 Sum_probs=161.8
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcC-CCCceeEEeec-CCCCeEEEEEccCCCE--EEEEe------------
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVS-DPPKVIKLLNG-HSKDVTDFDFSSNNQY--IASSS------------ 250 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~-~~~~~~~~~~~-h~~~V~~l~~s~~~~~--l~s~s------------ 250 (498)
...+..++|+| ++++|++++.+ .|.+|++. + ++....... ..+.+.+++|+|+|++ ++++.
T Consensus 39 ~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~-g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSP-TEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEET-TEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECC-CCCEEEEEccc-eEEEEEECCC-CCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 34678899999 89999998888 89999997 5 554433221 1133667999999984 45553
Q ss_pred -CCCcEEEEECC-CCcEEEEEe-----cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC-CCcEE--EEee---cCCCe
Q 010871 251 -MDKTVRVWELT-KGDCIRVIY-----GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS-TGRII--KKLV---VDSEV 317 (498)
Q Consensus 251 -~dg~v~iwd~~-~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~--~~~~---~~~~i 317 (498)
.+|++.+|++. .++....+. ....+.+++|+|++..++++...++.|.+||+. +++.. ..+. +...+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 68999999997 466554443 235688999999765444333346899999998 77653 2333 25679
Q ss_pred EEEEEcCCCCEEEEEcC-CCeEEEEEccCCccccccc-cccccc----CCCcc------ceeeEEEeEeeEcCCCcEEEE
Q 010871 318 TSMDHDHTGQLLFCGDA-QGCIYSISMESHSGALSRS-HRHRTT----GKRKC------PVTTVQYRSFSLLAGGPVLLT 385 (498)
Q Consensus 318 ~~l~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-~~~~~~----~~~~~------~i~~~~~~~~~~s~~~~~l~t 385 (498)
..++|+|+|+++++++. ++.|.+|+++..++..... ...... .++.. .+..+.| ++|+|++|++
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~----~spdG~~l~v 271 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA----LTFSGKYMFA 271 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE----ECTTSSEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE----ECCCCCEEEE
Confidence 99999999998887764 7899999886544332110 000000 11121 3444440 4499999887
Q ss_pred EEcCC------cEEEEEccccccceeeEeE-eec-cCCceeeeEEEEeeeeeccCCCEEEEEeCC-CcEEEEECCCC
Q 010871 386 CTQDG------NLSFFSVALEIQGYLTFRC-SLK-LAPRVHSIRASFCPLLSLEKGEYIVAGSED-SNVYFYDLAKP 453 (498)
Q Consensus 386 ~s~dg------~i~iwd~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-g~I~iwd~~~~ 453 (498)
+..+. .|.+|++... +...... ... ...... ...|+|..+ +|++|++++.+ +.|.+|++...
T Consensus 272 ~~~~~~~~~~~~i~v~~~~~~--g~~~~~~~~~~~~~~~~~--~~a~sp~~~--dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 272 SSRANKFELQGYIAGFKLRDC--GSIEKQLFLSPTPTSGGH--SNAVSPCPW--SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTT--SCEEEEEEEEECSSCCTT--CCCEEECTT--CTTEEEEECSSSCEEEEEEEETT
T ss_pred ECCCCCCCCCCeEEEEEECCC--CCEEEeeeeeecCCCCcc--cceecCCCc--CCCEEEEEEcCCCeEEEEEEchh
Confidence 76533 8999998631 1111100 011 111111 224454111 79999998865 89999998764
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.78 E-value=1.4e-17 Score=161.99 Aligned_cols=275 Identities=8% Similarity=0.015 Sum_probs=175.3
Q ss_pred cEEEEEEecCCCCEEEEEeCC---CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcE
Q 010871 189 AVTILKFGHMSSDLLAYGASD---GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDC 265 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~d---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 265 (498)
.+.+++|+| +|++|+.+... ..|.+||+.+ ++......++......+.|+|||++|+.++.++.|.+||+.+++.
T Consensus 37 ~~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 37 YFYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLET-QQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp CTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTT-TEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eeecCcCCC-CCCEEEEEEecCCCceEEEEECCC-CcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 366789999 88888877543 3688888876 444333333333334488999999999999999999999999887
Q ss_pred EEEEecCCCeE-E-------------------EEEEcCCCcEEEEE----eCCCcEEEEEcCCCcEEEEeecCCCeEEEE
Q 010871 266 IRVIYGVSSQL-C-------------------IRFHPVNNNFLSVG----NANKEITVFNFSTGRIIKKLVVDSEVTSMD 321 (498)
Q Consensus 266 ~~~~~~~~~v~-~-------------------i~~~~~~~~~l~~g----~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~ 321 (498)
......+.... . ..|+|++..+++.. ..+..|.+||+.+++......+...+..+.
T Consensus 115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~ 194 (396)
T 3c5m_A 115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPI 194 (396)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccce
Confidence 66665443311 1 23455443222221 356689999999988777667778899999
Q ss_pred EcC-CCCEEEEEcCC------CeEEEEEccCCcccccccccccccCCC-ccceeeEEEeEeeEcCCCcEEEEEEcC----
Q 010871 322 HDH-TGQLLFCGDAQ------GCIYSISMESHSGALSRSHRHRTTGKR-KCPVTTVQYRSFSLLAGGPVLLTCTQD---- 389 (498)
Q Consensus 322 ~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~s~~~~~l~t~s~d---- 389 (498)
|+| ++..|+..+.+ ..|++|++......... ... ...+..+ .++|+|++|+.++.+
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~~~~~~~~~~-----~~spdg~~l~~~~~~~~~~ 262 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK-------EHAEGESCTHE-----FWIPDGSAMAYVSYFKGQT 262 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS-------CCCTTEEEEEE-----EECTTSSCEEEEEEETTTC
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee-------ccCCCccccce-----EECCCCCEEEEEecCCCCc
Confidence 999 78766665443 35788877543211110 111 1223334 445999988777654
Q ss_pred -CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeecc-CCCEEEEEe----------------CCCcEEEEECC
Q 010871 390 -GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLE-KGEYIVAGS----------------EDSNVYFYDLA 451 (498)
Q Consensus 390 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gs----------------~dg~I~iwd~~ 451 (498)
+.|.+||+.++..... ..... . ...| ++ +|+++++++ .++.|++||+.
T Consensus 263 ~~~l~~~d~~~g~~~~l-----~~~~~-~---~~~~-----s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 263 DRVIYKANPETLENEEV-----MVMPP-C---SHLM-----SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp CEEEEEECTTTCCEEEE-----EECCS-E---EEEE-----ECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred cceEEEEECCCCCeEEe-----eeCCC-C---CCCc-----cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 4499999875422111 11111 1 1233 35 899888765 34789999998
Q ss_pred CCCccceeeecCCCC-----------CeEEEEEcCCCCEEEEEeC-CCeEEEeec
Q 010871 452 KPKHSCVNKLQGHRF-----------PVVAVAWNHGENLLASSDL-YGIVIVWKR 494 (498)
Q Consensus 452 ~~~~~~~~~~~~h~~-----------~V~~l~~sp~~~~l~s~~~-Dg~i~iW~~ 494 (498)
+++. ..+..+.. .+..++|+|+|+.|+.++. ++...||.+
T Consensus 329 ~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 329 AKSA---QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTBC---CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cCce---EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 7653 33444443 2567899999998877664 566556544
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.77 E-value=4.7e-18 Score=174.51 Aligned_cols=232 Identities=10% Similarity=0.022 Sum_probs=159.6
Q ss_pred CCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeC---CCcEEEEEcCC
Q 010871 230 HSKDVTDFDFSSNNQYIASSSM-DKTVRVWELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNA---NKEITVFNFST 304 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~---dg~i~iwd~~~ 304 (498)
+..+|.+++|+|||++|++++. ||+++||++.+++..+...++ ..+..+.|+|+ .++++++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEec
Confidence 3567999999999999999887 999999999776655444444 36778999985 67777765 45556655433
Q ss_pred ---CcEEEEeecCCCeEEEEEcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC
Q 010871 305 ---GRIIKKLVVDSEVTSMDHDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG 380 (498)
Q Consensus 305 ---~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~ 380 (498)
+... .+.....+...+|+|+++ .+++...++.+.+||+......... .+.. .+ +.++|+|
T Consensus 98 ~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~--------~~~~--~~-----~~~spDG 161 (582)
T 3o4h_A 98 SRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA--------RLPG--FG-----FVSDIRG 161 (582)
T ss_dssp TSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE--------EESS--CE-----EEEEEET
T ss_pred cCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee--------cCCC--ce-----EEECCCC
Confidence 3222 443333455668888876 3334444455559998654322111 0111 33 3445999
Q ss_pred cEEEEEEcC----CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC--cEEEEECCCCC
Q 010871 381 PVLLTCTQD----GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS--NVYFYDLAKPK 454 (498)
Q Consensus 381 ~~l~t~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg--~I~iwd~~~~~ 454 (498)
++|++++.+ +.|++||+.++... ....... ......|+| ||++|+++..++ .|++||+.+++
T Consensus 162 ~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~~~~--~~~~~~~Sp-----DG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 162 DLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDSGEG--SFSSASISP-----GMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp TEEEEEEEEETTEEEEEEEETTTCCCE-----EECCSSC--EEEEEEECT-----TSCEEEEEECSSCEEEEEECTTTCC
T ss_pred CEEEEEEEcCCCCeEEEEEcCCCCCce-----EeecCCC--ccccceECC-----CCCEEEEccCCCeeEEEEEcCCCCc
Confidence 999988877 78999998765321 1111111 123335555 999999888888 89999999865
Q ss_pred ccceeeecCCCCCeEEEE--------EcCCCCEEEEEeCCCeEEEeec
Q 010871 455 HSCVNKLQGHRFPVVAVA--------WNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 455 ~~~~~~~~~h~~~V~~l~--------~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
. . .+.+|...+..++ |+|||.++++++.||.+++|++
T Consensus 230 ~--~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 230 V--E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp E--E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred E--E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 3 3 6677777777777 9999999999999999999997
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=3.6e-16 Score=150.05 Aligned_cols=273 Identities=9% Similarity=0.117 Sum_probs=181.1
Q ss_pred ecccccEEEEEEecCCCCEEEEEe----------CCCcEEEEEcCCCCceeEEeecC------CCCeEEEEEccCCCEEE
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGA----------SDGTLTVCTVSDPPKVIKLLNGH------SKDVTDFDFSSNNQYIA 247 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~----------~dg~i~iwd~~~~~~~~~~~~~h------~~~V~~l~~s~~~~~l~ 247 (498)
..+..+ .++|+| ++++|+++. .++.|.+||..+ .+.+..+... ......++|+|+|++|+
T Consensus 48 ~~g~~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t-~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 48 PTAFNG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADK-LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp ECCEEE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTT-CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred cCCCCC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcC-CcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 334444 899999 899888886 367899999987 6666666532 34567899999999999
Q ss_pred EEeC--CCcEEEEECCCCcEEEE-EecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC-CcEEEEe------ecCCCe
Q 010871 248 SSSM--DKTVRVWELTKGDCIRV-IYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST-GRIIKKL------VVDSEV 317 (498)
Q Consensus 248 s~s~--dg~v~iwd~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~------~~~~~i 317 (498)
++.. +++|.+||+.+++.+.. +... ....+.+.|.+...+++.+.||.+.+|++.. ++..... ......
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~ 202 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP 202 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC
T ss_pred EECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc
Confidence 8864 57899999999988877 5433 3333567787777888888999999999865 5554221 111111
Q ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccc---cCCCccceeeEEEeEeeEcCCCcEEEEEEc------
Q 010871 318 TSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRT---TGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ------ 388 (498)
Q Consensus 318 ~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~------ 388 (498)
..+.+.+++..++..+.++.|+++|+............... ......+ .. ...++++++++.++++..
T Consensus 203 ~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~g--~~~~a~~~dg~~lyv~~~~~~~~~ 279 (361)
T 2oiz_A 203 IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP-GG--YNLVGLHRASGRMYVFMHPDGKEG 279 (361)
T ss_dssp BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE-CC--SSCEEEETTTTEEEEEEESSCCTT
T ss_pred eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc-CC--eeEEEEecCCCeEEEEEccCCCcc
Confidence 22334566777777788899999998644322211100000 0000000 00 001334499888877654
Q ss_pred -----CCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC
Q 010871 389 -----DGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG 463 (498)
Q Consensus 389 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~ 463 (498)
.+.|.+||+.+... ........ ...+.|+| +|++|++++. +.|.+||..++..+.+..+..
T Consensus 280 ~~~~~~~~v~viD~~t~~~-----v~~i~~~~---p~~ia~sp-----dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~ 345 (361)
T 2oiz_A 280 THKFPAAEIWVMDTKTKQR-----VARIPGRD---ALSMTIDQ-----QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG 345 (361)
T ss_dssp CTTCCCSEEEEEETTTTEE-----EEEEECTT---CCEEEEET-----TTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred cccCCCceEEEEECCCCcE-----EEEEecCC---eeEEEECC-----CCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence 34799999876521 11122222 34446676 9999998887 999999999963356777767
Q ss_pred CCCCeEEEEEcCCCC
Q 010871 464 HRFPVVAVAWNHGEN 478 (498)
Q Consensus 464 h~~~V~~l~~sp~~~ 478 (498)
+......++++|+|.
T Consensus 346 ~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 346 AAEASLQVQFHPVGG 360 (361)
T ss_dssp SCSSEEEEEECCCSC
T ss_pred CCCCcEEEEecCCCC
Confidence 778889999999985
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=4.2e-16 Score=148.74 Aligned_cols=232 Identities=10% Similarity=0.057 Sum_probs=154.4
Q ss_pred cEEEEEEecCCCCEE-EEEeCCCcEEEEEcCCCCceeEEeec-C-----CCCeEEEEEccCCCEEEEEeCC---------
Q 010871 189 AVTILKFGHMSSDLL-AYGASDGTLTVCTVSDPPKVIKLLNG-H-----SKDVTDFDFSSNNQYIASSSMD--------- 252 (498)
Q Consensus 189 ~V~~v~~sp~~~~~l-asg~~dg~i~iwd~~~~~~~~~~~~~-h-----~~~V~~l~~s~~~~~l~s~s~d--------- 252 (498)
.+..++|+| +++++ +++..++.|.+||+.+ ++....+.. + ...+.+++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 44 GPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDT-CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp SSCEEEECT-TSSEEEEEETTTTEEEEEETTT-TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCceeEECC-CCCEEEEEeCCCCcEEEEeCCC-CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc
Confidence 577899999 77754 5556789999999987 666666553 2 2347899999999999998865
Q ss_pred ---CcEEEEECCCC---cEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCC-----------
Q 010871 253 ---KTVRVWELTKG---DCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDS----------- 315 (498)
Q Consensus 253 ---g~v~iwd~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~----------- 315 (498)
+.|.+||+.++ +.+..+..+..+.+++|+|++. +++ ++ +.|.+||+.+++.+..+....
T Consensus 122 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDV 197 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBC
T ss_pred cCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccc
Confidence 89999999884 3445566666788899999775 444 43 349999999999887764332
Q ss_pred --------------CeEEEEEcCCCC-----------EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEE
Q 010871 316 --------------EVTSMDHDHTGQ-----------LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQ 370 (498)
Q Consensus 316 --------------~i~~l~~~~~~~-----------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 370 (498)
....+++++++. ++.....++.+.++++.. +...+..+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~ 261 (349)
T 1jmx_B 198 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----------------LTELYFTGL 261 (349)
T ss_dssp CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----------------CSSCEEEEE
T ss_pred eeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc----------------CCCcceeeE
Confidence 344566665442 122333444555554421 122334444
Q ss_pred EeEeeEcC-CCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEE
Q 010871 371 YRSFSLLA-GGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYD 449 (498)
Q Consensus 371 ~~~~~~s~-~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd 449 (498)
++| ++++++++ ++.|.+||+.+... . ......... ..+.|+| +|++|++++.++.|++||
T Consensus 262 -----~sp~dg~~l~~~--~~~v~~~d~~~~~~---~--~~~~~~~~~--~~~~~s~-----dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 262 -----RSPKDPNQIYGV--LNRLAKYDLKQRKL---I--KAANLDHTY--YCVAFDK-----KGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp -----ECSSCTTEEEEE--ESEEEEEETTTTEE---E--EEEECSSCC--CEEEECS-----SSSCEEEESBSSEEEEEE
T ss_pred -----ecCCCCCEEEEE--cCeEEEEECccCeE---E--EEEcCCCCc--cceEECC-----CCCEEEEecCCCeEEEEe
Confidence 449 99999988 88999999976421 1 111112222 2335555 999888888899999999
Q ss_pred CCCCCccceeeecC
Q 010871 450 LAKPKHSCVNKLQG 463 (498)
Q Consensus 450 ~~~~~~~~~~~~~~ 463 (498)
+.+++ .+..+..
T Consensus 323 ~~~~~--~~~~~~~ 334 (349)
T 1jmx_B 323 PDTLE--KVKNIKL 334 (349)
T ss_dssp TTTTE--EEEEEEC
T ss_pred ccccc--eeeeeec
Confidence 98854 4555543
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=1.9e-16 Score=167.09 Aligned_cols=286 Identities=11% Similarity=0.105 Sum_probs=173.8
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCC-----eEEEEEccCCCEEEEEeCC---------Cc
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKD-----VTDFDFSSNNQYIASSSMD---------KT 254 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~-----V~~l~~s~~~~~l~s~s~d---------g~ 254 (498)
...+++|+| ++.+|+++ ||.|++||+.+ ++....+.+|... ...+.|||||++|+.++.+ +.
T Consensus 18 ~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWIS-DHEYLYKQ--ENNILVFNAEY-GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECS-SSEEEEEE--TTEEEEEETTT-CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECC-CCcEEEEc--CCcEEEEECCC-CceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 356899999 88888886 99999999998 6666777777643 2347899999999998876 56
Q ss_pred EEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee--cCCCe---------------
Q 010871 255 VRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV--VDSEV--------------- 317 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~i--------------- 317 (498)
+.+||+.+++..........+...+|+|++..++. + .++.|++||+.+++..+... ....+
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~-~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAY-V-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEE-E-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEE-E-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 67999999986543333457889999997755544 4 47899999998887554321 22222
Q ss_pred --EEEEEcCCCCEEEEEcCCC------------------------------------eEEEEEccC---Ccc-ccccccc
Q 010871 318 --TSMDHDHTGQLLFCGDAQG------------------------------------CIYSISMES---HSG-ALSRSHR 355 (498)
Q Consensus 318 --~~l~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~~-~~~~~~~ 355 (498)
..+.|+|||+.|+.+..|. .|++||+.. ... .......
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 3589999999988774322 356666654 211 0000000
Q ss_pred ccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC----CcEEEEEcccccc----ceeeEeEeeccCCcee---eeEEEE
Q 010871 356 HRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD----GNLSFFSVALEIQ----GYLTFRCSLKLAPRVH---SIRASF 424 (498)
Q Consensus 356 ~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d----g~i~iwd~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~ 424 (498)
......+...+..+.|+ |+|+.++..... ..|.+||+.++.. ..............+. .....|
T Consensus 252 ~~~~~~~~~~~~~~~ws-----pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWA-----TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF 326 (740)
T ss_dssp CHHHHTSCEEEEEEEEE-----ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred CccCCCCCeEEEEEEEe-----CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence 00001244455555554 999977665443 3699999887641 0000000011111111 112345
Q ss_pred eeeeeccCCCEEE-EEeC-CC--cEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEE-EEeC----CCeEEEeec
Q 010871 425 CPLLSLEKGEYIV-AGSE-DS--NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLA-SSDL----YGIVIVWKR 494 (498)
Q Consensus 425 ~~~~~~~~~~~l~-~gs~-dg--~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~----Dg~i~iW~~ 494 (498)
+| ||+.|+ ..+. +| .|++||+.++. ...+......|..+.+ ++++.|+ ++.. .+...||.+
T Consensus 327 sp-----DG~~l~~~~s~~~G~~~l~~~~~~~~~---~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 327 TL-----DGNSFYKIISNEEGYRHICYFQIDKKD---CTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp CT-----TSSEEEEEEECTTSCEEEEEEETTCSS---CEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred cC-----CCCEEEEEEEcCCCceEEEEEECCCCc---eEecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence 55 999877 6654 33 68888988754 3344444556666542 3355544 4443 244555543
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=3.4e-15 Score=141.50 Aligned_cols=248 Identities=11% Similarity=0.151 Sum_probs=175.7
Q ss_pred cccEEEEEEecCCCCEEEEEeCC------------------------CcEEEEEcCCCCceeEEee-cCCCCeEEEEEcc
Q 010871 187 KAAVTILKFGHMSSDLLAYGASD------------------------GTLTVCTVSDPPKVIKLLN-GHSKDVTDFDFSS 241 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~d------------------------g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~ 241 (498)
-+.|.+|+++| +|+++++...+ +.|.+||..+ ++....+. ++-.....+++++
T Consensus 23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-AEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-CCEEEEECTTTCSSEEEEEECT
T ss_pred cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-CeEEeccCCCccCCceEEEECC
Confidence 35799999999 89999888877 4799999987 56655554 4556889999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-EEEEEec---------C-CCeEEEEEEcCCCcEEEEEe-CCCcEEEEEcCCCcEEE
Q 010871 242 NNQYIASSSMDKTVRVWELTKGD-CIRVIYG---------V-SSQLCIRFHPVNNNFLSVGN-ANKEITVFNFSTGRIIK 309 (498)
Q Consensus 242 ~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~---------~-~~v~~i~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~ 309 (498)
+|+++++...++.|++||..... .+..+.. + ..+..+++.|+++.++++.+ .++.|++|| .+++.+.
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 99988888889999999986542 4555531 1 25789999996667888776 689999999 5677777
Q ss_pred Eeec-C----------CCeEEEEEcCC-CCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEc
Q 010871 310 KLVV-D----------SEVTSMDHDHT-GQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLL 377 (498)
Q Consensus 310 ~~~~-~----------~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s 377 (498)
.+.. . .....++++|+ +.++++...++.|++|+.+.. ........ ..+...+..+.+.
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G--~~~~~~~~---~~~~~~~~~~~~~----- 249 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK--EFVREIKH---ASFGRNVFAISYI----- 249 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC--CEEEEECC---TTTTTCEEEEEEE-----
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC--cEEEEEec---cccCCCcceeeec-----
Confidence 7632 1 23889999998 777788888999999987522 11111100 1122223333322
Q ss_pred CCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccc
Q 010871 378 AGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSC 457 (498)
Q Consensus 378 ~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~ 457 (498)
| +..+ .. +|+.+++...+..|++|+..+++ .
T Consensus 250 p-g~~~-----------------------------------------~~-----~g~~~v~~~~~~~v~~~~~~~g~--~ 280 (329)
T 3fvz_A 250 P-GFLF-----------------------------------------AV-----NGKPYFGDQEPVQGFVMNFSSGE--I 280 (329)
T ss_dssp T-TEEE-----------------------------------------EE-----ECCCCTTCSCCCCEEEEETTTCC--E
T ss_pred C-CEEE-----------------------------------------Ee-----CCCEEeccCCCcEEEEEEcCCCe--E
Confidence 2 1111 11 34444445556789999988754 4
Q ss_pred eeee---cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 458 VNKL---QGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 458 ~~~~---~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+..+ .++...+.+|+++|+|.++++...++.|++|+++.
T Consensus 281 ~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 281 IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 5555 35677799999999998888888999999999764
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=8e-15 Score=135.96 Aligned_cols=240 Identities=9% Similarity=0.136 Sum_probs=165.8
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-------CCeEEEEEEcCCCcEEEEEeC-CCcEEEE
Q 010871 229 GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV-------SSQLCIRFHPVNNNFLSVGNA-NKEITVF 300 (498)
Q Consensus 229 ~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-------~~v~~i~~~~~~~~~l~~g~~-dg~i~iw 300 (498)
+|-..+.+++++++++++++...++.|.+||.. ++.+..+... ..+..+++.+.++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 6666666431 356788886445566666543 8899999
Q ss_pred EcCCCcEEEEee--cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC
Q 010871 301 NFSTGRIIKKLV--VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA 378 (498)
Q Consensus 301 d~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~ 378 (498)
| .+++.+..+. ....+.+++++++|+++++...++.|++|+.... ...... ...+...+..+.+. +
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~---~~~~~~~p~~i~~~-----~ 173 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN---VLHKFG---CSKHLEFPNGVVVN-----D 173 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC---EEEEEE---CTTTCSSEEEEEEC-----S
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC---EEEEeC---CCCccCCcEEEEEC-----C
Confidence 9 5677777664 3357899999999998888888899999986422 111110 01222345555554 8
Q ss_pred CCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCc-eeeeEEEEeeeeeccCCCEEEEEeCCC-cEEEEECCCCCcc
Q 010871 379 GGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPR-VHSIRASFCPLLSLEKGEYIVAGSEDS-NVYFYDLAKPKHS 456 (498)
Q Consensus 379 ~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~gs~dg-~I~iwd~~~~~~~ 456 (498)
+++++++...++.|++||.... ... ....... .....+++. ++|+++++...++ .|.+||... .
T Consensus 174 ~g~l~v~~~~~~~i~~~~~~g~----~~~--~~~~~g~~~~p~~i~~d-----~~G~l~v~~~~~~~~i~~~~~~g---~ 239 (286)
T 1q7f_A 174 KQEIFISDNRAHCVKVFNYEGQ----YLR--QIGGEGITNYPIGVGIN-----SNGEILIADNHNNFNLTIFTQDG---Q 239 (286)
T ss_dssp SSEEEEEEGGGTEEEEEETTCC----EEE--EESCTTTSCSEEEEEEC-----TTCCEEEEECSSSCEEEEECTTS---C
T ss_pred CCCEEEEECCCCEEEEEcCCCC----EEE--EEccCCccCCCcEEEEC-----CCCCEEEEeCCCCEEEEEECCCC---C
Confidence 8998888788999999997532 111 1111111 112222444 4899888888776 999999653 2
Q ss_pred ceeeecCCC--CCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 457 CVNKLQGHR--FPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 457 ~~~~~~~h~--~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.+..+..+. ..+.+++++|+|+++++ +.|++|++|++..
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 240 LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 345554443 34789999999987777 5799999999864
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=8.4e-16 Score=160.26 Aligned_cols=291 Identities=8% Similarity=-0.034 Sum_probs=182.0
Q ss_pred eeecccccEEEEEEecCCCCEEEEE--eCCCcEEEEEcCCCCceeEEeecCCCCeE---------EEEEc--cCCCE-EE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYG--ASDGTLTVCTVSDPPKVIKLLNGHSKDVT---------DFDFS--SNNQY-IA 247 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg--~~dg~i~iwd~~~~~~~~~~~~~h~~~V~---------~l~~s--~~~~~-l~ 247 (498)
.+.+|...|..++|++ +.-++++. +.++...||.... ......+..|...+. ...|+ |||+. |+
T Consensus 18 ~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRA-DGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECT-TSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECC-CCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 3567888999999998 66566666 5588999999754 445667777776666 66676 99988 77
Q ss_pred EEeC-CCcEEEEECC--C-CcEEEEEec-----C-CCeEEEEEEcCCCcEEEEEeCC----------CcEEEEEcCC---
Q 010871 248 SSSM-DKTVRVWELT--K-GDCIRVIYG-----V-SSQLCIRFHPVNNNFLSVGNAN----------KEITVFNFST--- 304 (498)
Q Consensus 248 s~s~-dg~v~iwd~~--~-~~~~~~~~~-----~-~~v~~i~~~~~~~~~l~~g~~d----------g~i~iwd~~~--- 304 (498)
.++. +..|.+|++. . +. ...+.. + ..+..++|+|++. .|+.++.+ ..|++||+.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 6554 4566666665 2 43 344443 2 3567899999765 55555554 5899999988
Q ss_pred ---CcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCC--------CeEEEEEccC-Ccc-cccccccccccCCCccceeeEE
Q 010871 305 ---GRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQ--------GCIYSISMES-HSG-ALSRSHRHRTTGKRKCPVTTVQ 370 (498)
Q Consensus 305 ---~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d--------g~i~i~d~~~-~~~-~~~~~~~~~~~~~~~~~i~~~~ 370 (498)
++..... .+...+..++|+|+|+.|+.++.+ ..|++||+.. ... ..... ...+...+..+.
T Consensus 174 ~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l-----~~~~~~~~~~~~ 248 (662)
T 3azo_A 174 ADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL-----LGGPEEAIAQAE 248 (662)
T ss_dssp TCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE-----EEETTBCEEEEE
T ss_pred ccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe-----CCCCCceEcceE
Confidence 6665544 455678889999999999877644 4799999873 210 11110 122344555555
Q ss_pred EeEeeEcCCCcEEEEEEcCCc--EEEEEccccccceeeEeEeeccCCceeeeEEEE----eeeeeccCCCEEEEEeCCCc
Q 010871 371 YRSFSLLAGGPVLLTCTQDGN--LSFFSVALEIQGYLTFRCSLKLAPRVHSIRASF----CPLLSLEKGEYIVAGSEDSN 444 (498)
Q Consensus 371 ~~~~~~s~~~~~l~t~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~gs~dg~ 444 (498)
|+ |+|++++++..++. |.+||+..+.. ........... ...| ..+.++++++++++++. +.
T Consensus 249 ~s-----pdg~l~~~~~~~~~~~l~~~~~~~~~~-----~~l~~~~~~~~--~p~w~~~~~~~~~~~~~~~~~~~~~-~~ 315 (662)
T 3azo_A 249 WA-----PDGSLIVATDRTGWWNLHRVDPATGAA-----TQLCRREEEFA--GPLWTPGMRWFAPLANGLIAVVHGK-GA 315 (662)
T ss_dssp EC-----TTSCEEEEECTTSSCEEEEECTTTCCE-----EESSCCSSBSS--CCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred EC-----CCCeEEEEECCCCCeEEEEEECCCCce-----eeccccccccc--CccccccCceEeEeCCCEEEEEEEc-Cc
Confidence 54 99998888888884 55555433211 11111111110 0001 11223348999999998 99
Q ss_pred EEEE--ECCCCCccceeeecCCCCCeEEE-EEcCCCCEEEEEeCCCe--EEEeecCCC
Q 010871 445 VYFY--DLAKPKHSCVNKLQGHRFPVVAV-AWNHGENLLASSDLYGI--VIVWKRAKT 497 (498)
Q Consensus 445 I~iw--d~~~~~~~~~~~~~~h~~~V~~l-~~sp~~~~l~s~~~Dg~--i~iW~~~~~ 497 (498)
++|| |+.++. +..+..|...+..+ +++.+.-++++++.+.. |.+|+++++
T Consensus 316 ~~l~~~d~~~~~---~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 316 AVLGILDPESGE---LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp CEEEEEETTTTE---EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred cEEEEEECCCCc---EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 9999 554432 56777787778877 55544334555566654 444555443
No 170
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.71 E-value=1.9e-16 Score=166.83 Aligned_cols=246 Identities=10% Similarity=0.065 Sum_probs=156.3
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC----eEEEEEEcCCCcEEEEEeC---------CCcEEEEE
Q 010871 235 TDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSS----QLCIRFHPVNNNFLSVGNA---------NKEITVFN 301 (498)
Q Consensus 235 ~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~----v~~i~~~~~~~~~l~~g~~---------dg~i~iwd 301 (498)
.+++|+|+|++++ .+.|++|++||+.+++....+.++.. +.+++|+|++ ++|+.++. ++.|++||
T Consensus 19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEE
Confidence 3689999996554 45699999999999998877776543 7899999966 55555544 68999999
Q ss_pred cCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceee------------E
Q 010871 302 FSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTT------------V 369 (498)
Q Consensus 302 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~------------~ 369 (498)
+.+++.+........+..++|+|+|+.|+.+. ++.|++|++.......... .++...+.. .
T Consensus 97 ~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~------~~~~~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 97 LSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITF------NGRENKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp TTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCC------CCBTTTEEESSCCHHHHHHTTC
T ss_pred CCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEec------CCCcCCeEcccccceeeeeccc
Confidence 99987632222345688999999999998885 7899999986543321110 111111110 0
Q ss_pred EEeEeeEcCCCcEEEEEEcCC----------------------------------cEEEEEccccccc-eeeEeEeecc-
Q 010871 370 QYRSFSLLAGGPVLLTCTQDG----------------------------------NLSFFSVALEIQG-YLTFRCSLKL- 413 (498)
Q Consensus 370 ~~~~~~~s~~~~~l~t~s~dg----------------------------------~i~iwd~~~~~~~-~~~~~~~~~~- 413 (498)
....+.|+|+|++|++++.|. .|++||+.++... .........+
T Consensus 170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence 001344559999999988663 6778888754321 0000000000
Q ss_pred CCceeeeEEEEeeeeeccCCCEEEEEeCC----CcEEEEE----CCCCCccceeee----cCCCCCeE-----EEEEcCC
Q 010871 414 APRVHSIRASFCPLLSLEKGEYIVAGSED----SNVYFYD----LAKPKHSCVNKL----QGHRFPVV-----AVAWNHG 476 (498)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d----g~I~iwd----~~~~~~~~~~~~----~~h~~~V~-----~l~~sp~ 476 (498)
..........|+| |++++++.... ..|++|| +.+++ +...+ .+|...+. .++|+||
T Consensus 250 ~~~~~~~~~~~Sp-----D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 250 SSDYYFSWLTWVT-----DERVCLQWLKRVQNVSVLSICDFREDWQTWD--CPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp TSCEEEEEEEESS-----SSEEEEEEEESSTTEEEEEEEEECSSSSSEE--CCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred CCcceEEEeEEeC-----CCeEEEEEeccccCeEEEEEEcccCCCCCCc--eEEEEecccccCCceEccccCCccEECCC
Confidence 1111222335555 88877775433 2488899 76643 33333 46777776 8899999
Q ss_pred CCEEE--EEeCCC--eEEEeecCC
Q 010871 477 ENLLA--SSDLYG--IVIVWKRAK 496 (498)
Q Consensus 477 ~~~l~--s~~~Dg--~i~iW~~~~ 496 (498)
|+.|+ ++..+| .|.+|++.+
T Consensus 323 g~~l~~~~~~~~g~~~l~~~~~~~ 346 (719)
T 1z68_A 323 AISYYKIFSDKDGYKHIHYIKDTV 346 (719)
T ss_dssp SSCEEEEEECTTSCEEEEEESSCS
T ss_pred CCeEEEEEEccCCceEEEEEECCC
Confidence 99554 355566 466666654
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=5.9e-15 Score=140.08 Aligned_cols=272 Identities=11% Similarity=0.051 Sum_probs=178.7
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIR 267 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 267 (498)
..|.+++|++ ++..++..+.++.++.|. ......+..+...+.+++|++++++++++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSG-KSNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCG-GGGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cccceeeecC-CccceeEEeecccCcccc----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 3467788888 666677777889999992 45566777787888999999999988888889999999999887665
Q ss_pred EEe-cCCCeEEEEEEcCCCcEEEEEeCC----CcEEEEEcCCCcEEEEee---cCCCeEEEEEcCCCCEEEEEcC-----
Q 010871 268 VIY-GVSSQLCIRFHPVNNNFLSVGNAN----KEITVFNFSTGRIIKKLV---VDSEVTSMDHDHTGQLLFCGDA----- 334 (498)
Q Consensus 268 ~~~-~~~~v~~i~~~~~~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~~~~----- 334 (498)
... ....+.++++.+++ .++++...+ +.|.+||..+++....+. ....+.+++++|+|+++++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~ 159 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN 159 (333)
T ss_dssp EEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred EeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccC
Confidence 543 34578899999865 566666555 689999998877653332 3457899999999987776654
Q ss_pred -CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEE-EcCCcEEEEEccccccceeeE--eEe
Q 010871 335 -QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC-TQDGNLSFFSVALEIQGYLTF--RCS 410 (498)
Q Consensus 335 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~--~~~ 410 (498)
.+.|+.++.... ..... ......+..+ +++++++.|+.+ +.++.|.+||+.......... ...
T Consensus 160 ~~~~l~~~~~~~~--~~~~~------~~~~~~~~~i-----~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~ 226 (333)
T 2dg1_A 160 PLGGVYYVSPDFR--TVTPI------IQNISVANGI-----ALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP 226 (333)
T ss_dssp CCEEEEEECTTSC--CEEEE------EEEESSEEEE-----EECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE
T ss_pred CCceEEEEeCCCC--EEEEe------ecCCCcccce-----EECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEE
Confidence 355666654321 11110 0011123334 445999866554 567899999986321111111 111
Q ss_pred eccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCC------CeEEEEEcCCCCEEEEEe
Q 010871 411 LKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRF------PVVAVAWNHGENLLASSD 484 (498)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~------~V~~l~~sp~~~~l~s~~ 484 (498)
........ ...+++.++|+++++...++.|.+||... + .+..+..+.. .+.+++|+|++..|+.++
T Consensus 227 ~~~~~~~~-----~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-~--~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 227 YYFTGHEG-----PDSCCIDSDDNLYVAMYGQGRVLVFNKRG-Y--PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp EECCSSSE-----EEEEEEBTTCCEEEEEETTTEEEEECTTS-C--EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred EecCCCCC-----CCceEECCCCCEEEEEcCCCEEEEECCCC-C--EEEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence 11111111 11233445899888888889999999853 2 3444443332 689999999987776655
Q ss_pred CC
Q 010871 485 LY 486 (498)
Q Consensus 485 ~D 486 (498)
.+
T Consensus 299 ~~ 300 (333)
T 2dg1_A 299 ND 300 (333)
T ss_dssp EC
T ss_pred Cc
Confidence 54
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.69 E-value=2.5e-15 Score=158.52 Aligned_cols=251 Identities=8% Similarity=0.053 Sum_probs=157.1
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC----e--EEEEEEcCCCcEEEEEeCC---------Cc
Q 010871 232 KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSS----Q--LCIRFHPVNNNFLSVGNAN---------KE 296 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~----v--~~i~~~~~~~~~l~~g~~d---------g~ 296 (498)
....++.|+|+|++|+++ ||+|++||+.++++...+.++.. + ..+.|+|++ +.|+.++.+ +.
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC-CEEEEEECCeeeEEEccceE
Confidence 346689999999888886 99999999999998887777641 1 247899966 555555554 56
Q ss_pred EEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCcccee-eE------
Q 010871 297 ITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVT-TV------ 369 (498)
Q Consensus 297 i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~-~~------ 369 (498)
+.+||+.+++......+...+...+|+|+|+.|+.+. ++.|++|++.......... .++...+. ..
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~------~g~~~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW------TGKEDIIYNGITDWVYE 166 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS------CCBTTTEEESBCCHHHH
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcC------CCCccceecCccccccc
Confidence 7899999998765445677899999999999998874 6899999886544221111 11111111 00
Q ss_pred -----EEeEeeEcCCCcEEEEEEcCCc------------------------------------EEEEEccc---ccc-ce
Q 010871 370 -----QYRSFSLLAGGPVLLTCTQDGN------------------------------------LSFFSVAL---EIQ-GY 404 (498)
Q Consensus 370 -----~~~~~~~s~~~~~l~t~s~dg~------------------------------------i~iwd~~~---~~~-~~ 404 (498)
....+.|||||+.|+.++.|.. |.+||+.+ +.. ..
T Consensus 167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~ 246 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS 246 (740)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence 0012445599999998875433 44455443 210 00
Q ss_pred eeEeEeecc-CCceeeeEEEEeeeeeccCCCEEEEEeC----CCcEEEEECCCCC----ccceeee--cCCCCCeE----
Q 010871 405 LTFRCSLKL-APRVHSIRASFCPLLSLEKGEYIVAGSE----DSNVYFYDLAKPK----HSCVNKL--QGHRFPVV---- 469 (498)
Q Consensus 405 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~gs~----dg~I~iwd~~~~~----~~~~~~~--~~h~~~V~---- 469 (498)
..+...... ..........|+| ||+.++.... +..|++||+.+++ ...+..+ .+|...|.
T Consensus 247 ~~l~~~~~~~~~~~~~~~~~wsp-----dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~ 321 (740)
T 4a5s_A 247 IQITAPASMLIGDHYLCDVTWAT-----QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321 (740)
T ss_dssp EEECCCHHHHTSCEEEEEEEEEE-----TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred EEecCCccCCCCCeEEEEEEEeC-----CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence 000000000 0111223345666 9997666543 3379999998865 1112222 45665554
Q ss_pred -EEEEcCCCCEEE-EEe-CCC--eEEEeecCCC
Q 010871 470 -AVAWNHGENLLA-SSD-LYG--IVIVWKRAKT 497 (498)
Q Consensus 470 -~l~~sp~~~~l~-s~~-~Dg--~i~iW~~~~~ 497 (498)
.++|+|||+.|+ ..+ .+| .|++|+++++
T Consensus 322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp CCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 789999999877 665 344 5777777653
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.69 E-value=1.7e-14 Score=137.74 Aligned_cols=258 Identities=10% Similarity=0.096 Sum_probs=165.3
Q ss_pred cEEEEEEecCCCCEEEEEe---------CCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCC---C--c
Q 010871 189 AVTILKFGHMSSDLLAYGA---------SDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD---K--T 254 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~---------~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d---g--~ 254 (498)
.+..+++ +|+.||... .++.|.+|++.+ ++. ..+ ..+..+.|+|||++|+.++.+ + .
T Consensus 16 ~~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~-~~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKN-NAR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTT-CCE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE---CCcEEEEEEeecCcccCCccceEEEEeCCC-Cce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 4566666 566665542 257799999987 443 333 568899999999999887754 2 3
Q ss_pred EEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeC--------------------------CCcEEEEEcCCCcEE
Q 010871 255 VRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNA--------------------------NKEITVFNFSTGRII 308 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~--------------------------dg~i~iwd~~~~~~~ 308 (498)
|.+|++.+++......... +..+.|+|++..+++++.. ...|.+||+.+++.+
T Consensus 87 l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 87 IWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 8888998887766665555 8899999977555555432 257999999988874
Q ss_pred EEeecCCCeEEEEEcCCCCEEEEEcCCC-------eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCc
Q 010871 309 KKLVVDSEVTSMDHDHTGQLLFCGDAQG-------CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGP 381 (498)
Q Consensus 309 ~~~~~~~~i~~l~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~ 381 (498)
..+... .+..++|+|+| +++++..++ ...+|.++ .+..... ..+ ..+.. ++|+|+
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l------~~~-~~~~~-------~spdg~ 227 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKM------FEK-VSFYA-------VDSDGE 227 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEE------EEE-ESEEE-------EEECSS
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEe------ccC-cceee-------ECCCCC
Confidence 445334 88899999999 777775442 34455444 2221111 111 12221 149999
Q ss_pred EEEEEEcCC--------cEEEEEccccccceeeEeEeeccCCceeeeEEEEe-eeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 382 VLLTCTQDG--------NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFC-PLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 382 ~l~t~s~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
.|+.++.++ .|.+|| .+. .... ...... .+. .+.++ ++ ++++++.++.++|| +.+
T Consensus 228 ~l~~~~~~~~~~~~~~~~l~~~d--~~~-----~~~l--~~~~~~----~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 228 RILLYGKPEKKYMSEHNKLYIYD--GKE-----VMGI--LDEVDR----GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp CEEEEECCSSSCCCSSCEEEEEC--SSC-----EEES--STTCCS----EEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred EEEEEEccccCCccccceEEEEC--CCc-----eEec--cccCCc----ccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 988877543 577777 221 0111 111111 112 13445 77 88999999999999 874
Q ss_pred CCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeE-EEeecC
Q 010871 453 PKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIV-IVWKRA 495 (498)
Q Consensus 453 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i-~iW~~~ 495 (498)
++ . ..+..+...|.+++|+| .++++++.++.. .||.++
T Consensus 292 g~--~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 292 GE--I-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp SS--E-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred Cc--e-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 33 2 34444577899999999 677777777665 777653
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=6.7e-14 Score=129.71 Aligned_cols=241 Identities=10% Similarity=0.173 Sum_probs=165.9
Q ss_pred ecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee------cCCCCeEEEEE-ccCCCEEEEEeC-CCcE
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN------GHSKDVTDFDF-SSNNQYIASSSM-DKTV 255 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~------~h~~~V~~l~~-s~~~~~l~s~s~-dg~v 255 (498)
.+|-..+.++++++ ++.++++...++.|.+||.. +.....+. +|...+.++++ .+++.++++... ++.|
T Consensus 26 ~g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 26 EGQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TTCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CCccCCCceEEECC-CCCEEEEECCCCEEEEECCC--CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 34556789999999 88888888889999999986 34455553 34567899999 467766666533 7899
Q ss_pred EEEECCCCcEEEEEecC--CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee---cCCCeEEEEEcCCCCEEE
Q 010871 256 RVWELTKGDCIRVIYGV--SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV---VDSEVTSMDHDHTGQLLF 330 (498)
Q Consensus 256 ~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~ 330 (498)
.+|| .+++.+..+... ..+..+++.+++ +++++...++.|.+||. .++.+..+. ....+..++++++|++++
T Consensus 103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 9999 667777766533 467899999965 67777777899999996 466666664 335689999999999888
Q ss_pred EEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC-cEEEEEccccccceeeEeE
Q 010871 331 CGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG-NLSFFSVALEIQGYLTFRC 409 (498)
Q Consensus 331 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg-~i~iwd~~~~~~~~~~~~~ 409 (498)
+...++.|++|+.... ...... ..++...+..+.+. ++|+++++...++ .|.+||.... .....
T Consensus 180 ~~~~~~~i~~~~~~g~---~~~~~~---~~g~~~~p~~i~~d-----~~G~l~v~~~~~~~~i~~~~~~g~----~~~~~ 244 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQ---YLRQIG---GEGITNYPIGVGIN-----SNGEILIADNHNNFNLTIFTQDGQ----LISAL 244 (286)
T ss_dssp EEGGGTEEEEEETTCC---EEEEES---CTTTSCSEEEEEEC-----TTCCEEEEECSSSCEEEEECTTSC----EEEEE
T ss_pred EECCCCEEEEEcCCCC---EEEEEc---cCCccCCCcEEEEC-----CCCCEEEEeCCCCEEEEEECCCCC----EEEEE
Confidence 8888999999987432 111110 01122344555554 8999888887776 9999996432 11111
Q ss_pred eeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 410 SLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
.. .........+.+.+ +|+++++ +.++.|++|++..
T Consensus 245 ~~-~~~~~~~~~i~~~~-----~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 245 ES-KVKHAQCFDVALMD-----DGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EE-SSCCSCEEEEEEET-----TTEEEEE-ETTTEEEEEECSC
T ss_pred cc-cCCCCcceeEEECC-----CCcEEEE-CCCCeEEEEEccc
Confidence 11 11111222335554 8887777 6799999999865
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=1.4e-13 Score=138.90 Aligned_cols=276 Identities=10% Similarity=-0.001 Sum_probs=190.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC--CCcEEEEEecCCCeE
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELT--KGDCIRVIYGVSSQL 276 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~v~ 276 (498)
.+.++++...++.|.++|..+ .+.+..+.. ...+..+.|+|||++|++++.|+.|.+||+. +++.+..+.......
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t-~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~ 243 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGST-YEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 243 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTT-CCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CceEEEEeCCCCeEEEEECCC-CeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence 445777778899999999998 677777763 3356799999999999999999999999996 888888888777788
Q ss_pred EEEEE----cCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec------------CCCeEEEEEcCCCCE-EEEEcCCCeEE
Q 010871 277 CIRFH----PVNNNFLSVGNANKEITVFNFSTGRIIKKLVV------------DSEVTSMDHDHTGQL-LFCGDAQGCIY 339 (498)
Q Consensus 277 ~i~~~----~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~------------~~~i~~l~~~~~~~~-l~~~~~dg~i~ 339 (498)
.++|+ |++..++++...+++|.++|..+.+.+..+.. ...+..+..++++.. ++....+|.|.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 99999 57766666667779999999999999887742 126788888888764 44556779999
Q ss_pred EEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccceeeEeEee--ccCCc
Q 010871 340 SISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYLTFRCSL--KLAPR 416 (498)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~ 416 (498)
++|............ ....... .+.+++++++|+++. .++.|.++|+.++.. ...... .....
T Consensus 324 ~vd~~~~~~~~v~~i------~~~~~~~-----d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl---~~~i~vgg~~Php 389 (567)
T 1qks_A 324 LVDYTDLNNLKTTEI------SAERFLH-----DGGLDGSHRYFITAANARNKLVVIDTKEGKL---VAIEDTGGQTPHP 389 (567)
T ss_dssp EEETTCSSEEEEEEE------ECCSSEE-----EEEECTTSCEEEEEEGGGTEEEEEETTTTEE---EEEEECSSSSBCC
T ss_pred EEecCCCccceeeee------ecccccc-----CceECCCCCEEEEEeCCCCeEEEEECCCCcE---EEEEeccCcCCCC
Confidence 998764321111100 0111122 344559999987766 578999999986532 111111 11111
Q ss_pred eeeeEEEEeeeeeccCCC-EEEEEe-CCCcEEEEECCCCC-----ccceeeecCCCCCeEEEEEcCCCCEEEEEeC----
Q 010871 417 VHSIRASFCPLLSLEKGE-YIVAGS-EDSNVYFYDLAKPK-----HSCVNKLQGHRFPVVAVAWNHGENLLASSDL---- 485 (498)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~-~l~~gs-~dg~I~iwd~~~~~-----~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---- 485 (498)
..... -+.| ++. .++++. .++.|.++|..+.+ .+.+..+......-..|..+|++++|.+...
T Consensus 390 g~g~~-~~~p-----~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~ 463 (567)
T 1qks_A 390 GRGAN-FVHP-----TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE 463 (567)
T ss_dssp TTCEE-EEET-----TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS
T ss_pred cccee-eECC-----CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCC
Confidence 11111 1333 644 444443 46899999998743 3456666654444455788999999988663
Q ss_pred ---CCeEEEeecCC
Q 010871 486 ---YGIVIVWKRAK 496 (498)
Q Consensus 486 ---Dg~i~iW~~~~ 496 (498)
.+.|.|+|+++
T Consensus 464 ~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 464 AEISGSVAVFDIKA 477 (567)
T ss_dssp HHHHTCEEEEEGGG
T ss_pred cccCceEEEEECCc
Confidence 35999999864
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.67 E-value=4.3e-15 Score=144.10 Aligned_cols=258 Identities=10% Similarity=0.020 Sum_probs=163.7
Q ss_pred EEcCCCCceeEEeecCCCCeEE-----EEEccCCCEEEEEeC-CCc--EEEEECCCCcEEEEEecCCCe-EEEEEEcCCC
Q 010871 215 CTVSDPPKVIKLLNGHSKDVTD-----FDFSSNNQYIASSSM-DKT--VRVWELTKGDCIRVIYGVSSQ-LCIRFHPVNN 285 (498)
Q Consensus 215 wd~~~~~~~~~~~~~h~~~V~~-----l~~s~~~~~l~s~s~-dg~--v~iwd~~~~~~~~~~~~~~~v-~~i~~~~~~~ 285 (498)
++..+ +.....+..|...... .+|+|||++|+.++. +|. |.+||+.+++......++... ....|+|++
T Consensus 15 ~~~~~-g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg- 92 (388)
T 3pe7_A 15 QDAST-GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD- 92 (388)
T ss_dssp ECTTT-CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS-
T ss_pred ecCCC-CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC-
Confidence 34444 6677778878776666 889999999998887 664 888899998877766665543 367899965
Q ss_pred cEEEEEeCCCcEEEEEcCCCcEEEEeecCCC-eEEE--EEcCCCCEEEEE----------------------cCCCeEEE
Q 010871 286 NFLSVGNANKEITVFNFSTGRIIKKLVVDSE-VTSM--DHDHTGQLLFCG----------------------DAQGCIYS 340 (498)
Q Consensus 286 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-i~~l--~~~~~~~~l~~~----------------------~~dg~i~i 340 (498)
..|+.+..++.|++||+.+++.......... +... .+++++..++.. ..++.|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 5677777888999999999987766654333 3333 348999988743 23467888
Q ss_pred EEccCCcccccccccccccCCCccceeeEEEeEeeEcC-CCcEEEEEEcCC------cEEEEEccccccceeeEeEeecc
Q 010871 341 ISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA-GGPVLLTCTQDG------NLSFFSVALEIQGYLTFRCSLKL 413 (498)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~-~~~~l~t~s~dg------~i~iwd~~~~~~~~~~~~~~~~~ 413 (498)
||+........ ..+...+..+.|+ | +|+.|+.++.++ .|.++|...... ......
T Consensus 173 ~d~~~g~~~~l--------~~~~~~~~~~~~s-----p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~ 234 (388)
T 3pe7_A 173 VDLKTGESTVI--------LQENQWLGHPIYR-----PYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-----RKVKTH 234 (388)
T ss_dssp EETTTCCEEEE--------EEESSCEEEEEEE-----TTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-----EESCCC
T ss_pred EECCCCceEEe--------ecCCccccccEEC-----CCCCCEEEEEEecCCCCCcceEEEEeCCCCce-----EEeeeC
Confidence 88865432211 1222334445444 9 999988877643 677777654321 111111
Q ss_pred CCceeeeEEEEeeeeeccCCCEEEEEeC-CC----cEEEEECCCCCccceeeecCCCCC---eEEEEEcCCCCEEEEE--
Q 010871 414 APRVHSIRASFCPLLSLEKGEYIVAGSE-DS----NVYFYDLAKPKHSCVNKLQGHRFP---VVAVAWNHGENLLASS-- 483 (498)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~-dg----~I~iwd~~~~~~~~~~~~~~h~~~---V~~l~~sp~~~~l~s~-- 483 (498)
..........|+| ||+.|+..+. ++ .|++||+.+++...+..+.++... ...++|+|||+.|+..
T Consensus 235 ~~~~~~~~~~~sp-----dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 235 AEGESCTHEFWVP-----DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp CTTEEEEEEEECT-----TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred CCCcccccceECC-----CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 1111222335555 9997765443 22 399999998765445444442111 1223799999987754
Q ss_pred -------eCCCeEEEeecCCC
Q 010871 484 -------DLYGIVIVWKRAKT 497 (498)
Q Consensus 484 -------~~Dg~i~iW~~~~~ 497 (498)
..+..|++|+++++
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp -------CCCCEEEEEETTTT
T ss_pred eccccccCCCCEEEEEeccCC
Confidence 45678999998764
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=1.5e-13 Score=129.94 Aligned_cols=258 Identities=10% Similarity=0.014 Sum_probs=170.5
Q ss_pred CCCcEEEEEcCCCCceeEEee------cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEE
Q 010871 208 SDGTLTVCTVSDPPKVIKLLN------GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFH 281 (498)
Q Consensus 208 ~dg~i~iwd~~~~~~~~~~~~------~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~ 281 (498)
.++.|.+||..+ ++....+. ........+.+. +++.+++...++.|.+||..+++.+.++.....+..++++
T Consensus 15 ~~~~l~~~d~~t-~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPAT-CEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTT-TEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEE
T ss_pred CCceEEEEECCC-CEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEe
Confidence 378999999987 55443321 122346778774 4555666666799999999999999999777788899998
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCC------CeEEEEEcCCCCEEEEEc--CCCeEEEEEccCCccccccc
Q 010871 282 PVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDS------EVTSMDHDHTGQLLFCGD--AQGCIYSISMESHSGALSRS 353 (498)
Q Consensus 282 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~------~i~~l~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~ 353 (498)
+++ .++++...++.|.+||..+++....+.... ....+++ . +..++++. .++.|.++|+.+.+... .
T Consensus 93 ~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~--~ 167 (328)
T 3dsm_A 93 SDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVD--E 167 (328)
T ss_dssp ETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEE--E
T ss_pred CCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEE--E
Confidence 865 555555488999999999999888776544 6667777 3 44444444 48899999987543221 1
Q ss_pred ccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC----------CcEEEEEccccccceeeEeEeeccCCceeeeEEE
Q 010871 354 HRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD----------GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRAS 423 (498)
Q Consensus 354 ~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (498)
.. . ......+. ++++|++++++..+ +.|.++|..+... ..............++
T Consensus 168 i~-----~-g~~p~~i~-----~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-----~~~~~~~~g~~p~~la 231 (328)
T 3dsm_A 168 LT-----I-GIQPTSLV-----MDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV-----EKQFKFKLGDWPSEVQ 231 (328)
T ss_dssp EE-----C-SSCBCCCE-----ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE-----EEEEECCTTCCCEEEE
T ss_pred EE-----c-CCCccceE-----EcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE-----EEEEecCCCCCceeEE
Confidence 11 0 11123333 34889877776654 7899999875421 1111121111223335
Q ss_pred EeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcC-CCCEEEEE----eCCCeEEEeecC
Q 010871 424 FCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH-GENLLASS----DLYGIVIVWKRA 495 (498)
Q Consensus 424 ~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~----~~Dg~i~iW~~~ 495 (498)
++| ++++|+++.. .|.+||..+++......+..+.....+++++| ++.++++. ..++.|.+|+.+
T Consensus 232 ~~~-----d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 232 LNG-----TRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp ECT-----TSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred Eec-----CCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 554 8888887765 89999998865321112222246789999999 56666666 568999999987
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.65 E-value=2.7e-12 Score=119.34 Aligned_cols=281 Identities=8% Similarity=-0.015 Sum_probs=183.4
Q ss_pred ecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 010871 184 DQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG 263 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 263 (498)
..+...+.++++++ ++.++++...++.|.+||.. .......+..+...+.++++.++|.++++...++.|..||.. +
T Consensus 11 ~~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 11 TNQDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CSSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 34456799999999 88887777668899999987 232222223456789999999999888877778889999986 4
Q ss_pred cEEEEEe---cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe--ecCCCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 264 DCIRVIY---GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL--VVDSEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 264 ~~~~~~~---~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
+. ..+. ....+..+++.++ +.++++...++.|.+||. +++..... .....+..+++++++.++++...++.|
T Consensus 88 ~~-~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 88 II-KEYTLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp CE-EEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred cE-EEEeCCCcCCCceeeEECCC-CCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 33 3333 2346778999885 467776667889999998 55544332 234578999999999888887778899
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCcee
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVH 418 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
..|+. .. ..... . .......+..+.+. +++.++++...++.|.+||. .+.. .. .... .....
T Consensus 165 ~~~~~-~g--~~~~~-~---~~~~~~~~~~i~~~-----~~g~l~v~~~~~~~i~~~~~-~g~~---~~-~~~~-~~~~~ 226 (299)
T 2z2n_A 165 GRITE-SG--DITEF-K---IPTPASGPVGITKG-----NDDALWFVEIIGNKIGRITT-SGEI---TE-FKIP-TPNAR 226 (299)
T ss_dssp EEECT-TC--CEEEE-E---CSSTTCCEEEEEEC-----TTSSEEEEETTTTEEEEECT-TCCE---EE-EECS-STTCC
T ss_pred EEEcC-CC--cEEEe-e---CCCCCCcceeEEEC-----CCCCEEEEccCCceEEEECC-CCcE---EE-EECC-CCCCC
Confidence 99987 22 21111 0 11222334455444 88887777667889999998 3321 11 1111 11111
Q ss_pred eeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 419 SIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
...+.+. ++|+++++...++.|.+||.. +.. ....+..+...+.++++ +++.+.++.. .+.|..++.++.
T Consensus 227 ~~~i~~~-----~~g~l~v~~~~~~~i~~~d~~-g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 227 PHAITAG-----AGIDLWFTEWGANKIGRLTSN-NII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEEEEC-----STTCEEEEETTTTEEEEEETT-TEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred ceeEEEC-----CCCCEEEeccCCceEEEECCC-Cce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 2222333 488877766678899999984 321 12223445577999999 8888777665 567777776653
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=7e-13 Score=133.84 Aligned_cols=292 Identities=11% Similarity=0.067 Sum_probs=193.3
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcC--CCCceeEEeecCCCCeEEEEEc----cCCCEEEEEeC-CCcEEEEECC
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVS--DPPKVIKLLNGHSKDVTDFDFS----SNNQYIASSSM-DKTVRVWELT 261 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~--~~~~~~~~~~~h~~~V~~l~~s----~~~~~l~s~s~-dg~v~iwd~~ 261 (498)
.+..++|+| ++++|++++.|+.|.+||+. + .+.+..+.... ....++|+ |||++++++.. +++|.++|..
T Consensus 198 ~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 198 AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp CEEEEEECT-TSCEEEEEETTSEEEEEETTSSS-CCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CccceEECC-CCCEEEEEcCCCeEEEEECCCCC-CcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 567899999 99999999999999999995 5 56666666433 45789999 69998887665 5899999999
Q ss_pred CCcEEEEEecC------------CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE--EEEeecCCCeEEEEEcCCCC
Q 010871 262 KGDCIRVIYGV------------SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI--IKKLVVDSEVTSMDHDHTGQ 327 (498)
Q Consensus 262 ~~~~~~~~~~~------------~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~i~~l~~~~~~~ 327 (498)
+.+.+..+... ..+..+..++++..+++....+|.|.++|....+. +..+........+.|+|+++
T Consensus 275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr 354 (567)
T 1qks_A 275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR 354 (567)
T ss_dssp TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence 99998887632 14567888887777777777889999999987643 33344566778899999999
Q ss_pred EEEEEc-CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEE-EEEE-cCCcEEEEEccccccce
Q 010871 328 LLFCGD-AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVL-LTCT-QDGNLSFFSVALEIQGY 404 (498)
Q Consensus 328 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l-~t~s-~dg~i~iwd~~~~~~~~ 404 (498)
+++++. .++.|.++|+.+... ...........|.+. ...| +.|++..+ +++. .++.|.++|........
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl--~~~i~vgg~~Phpg~--g~~~----~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~ 426 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKL--VAIEDTGGQTPHPGR--GANF----VHPTFGPVWATSHMGDDSVALIGTDPEGHPD 426 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEE--EEEEECSSSSBCCTT--CEEE----EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred EEEEEeCCCCeEEEEECCCCcE--EEEEeccCcCCCCcc--ceee----ECCCCCcEEEeCCCCCCeEEEecCCCCCCcc
Confidence 876654 678999999875432 211111001222211 1112 12764444 4443 46899999987532110
Q ss_pred --eeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeC-------CCcEEEEECCCCC----ccceeeec--------C
Q 010871 405 --LTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE-------DSNVYFYDLAKPK----HSCVNKLQ--------G 463 (498)
Q Consensus 405 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-------dg~I~iwd~~~~~----~~~~~~~~--------~ 463 (498)
..........+ ...+....+ ++++++.+... .+.|.+||+.+.+ ...+..+. .
T Consensus 427 ~~~kvv~~i~~~g-~g~~~i~~~-----p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~ 500 (567)
T 1qks_A 427 NAWKILDSFPALG-GGSLFIKTH-----PNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE 500 (567)
T ss_dssp TBTSEEEEEECSC-SCCCCEECC-----TTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCS
T ss_pred ccCEEEEEEecCC-CCCEEEEeC-----CCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCC
Confidence 11111111111 112222344 49999988763 3589999998751 11112221 1
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-----CCCeEEEeecCCC
Q 010871 464 HRFPVVAVAWNHGENLLASSD-----LYGIVIVWKRAKT 497 (498)
Q Consensus 464 h~~~V~~l~~sp~~~~l~s~~-----~Dg~i~iW~~~~~ 497 (498)
-...+..+.|+|+|+.+..+. .++.|.|+|.++.
T Consensus 501 ~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 501 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 234689999999999877663 3799999998764
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.62 E-value=2.9e-14 Score=148.54 Aligned_cols=201 Identities=14% Similarity=0.102 Sum_probs=128.0
Q ss_pred EEEEe--cCCCCE-EEEEeC-CCcEEEEEcCCCC-ceeEEeec-----CCCCeEEEEEccCCCEEEEEeCC---------
Q 010871 192 ILKFG--HMSSDL-LAYGAS-DGTLTVCTVSDPP-KVIKLLNG-----HSKDVTDFDFSSNNQYIASSSMD--------- 252 (498)
Q Consensus 192 ~v~~s--p~~~~~-lasg~~-dg~i~iwd~~~~~-~~~~~~~~-----h~~~V~~l~~s~~~~~l~s~s~d--------- 252 (498)
...|+ | +++. |+.++. +..|.+|++...+ .....+.. |...+.+++|+|||+.|++++.+
T Consensus 81 ~~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 55565 8 7777 776654 5566666664001 33455555 67789999999999999998877
Q ss_pred -CcEEEEECCC------CcEEEEE-ecCCCeEEEEEEcCCCcEEEEEeCC-------CcEEEEEcC-CC---cEEEEee-
Q 010871 253 -KTVRVWELTK------GDCIRVI-YGVSSQLCIRFHPVNNNFLSVGNAN-------KEITVFNFS-TG---RIIKKLV- 312 (498)
Q Consensus 253 -g~v~iwd~~~------~~~~~~~-~~~~~v~~i~~~~~~~~~l~~g~~d-------g~i~iwd~~-~~---~~~~~~~- 312 (498)
..|.+||+.+ ++..... .++..+..+.|+|++..++++.... ..|++||+. ++ +......
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 5899999988 6554333 3345566789999765444444332 479999998 56 4433333
Q ss_pred cCCCeEEEEEcCCCCEEEEEcCCC--eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC
Q 010871 313 VDSEVTSMDHDHTGQLLFCGDAQG--CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG 390 (498)
Q Consensus 313 ~~~~i~~l~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg 390 (498)
+...+..++|+|+|+++++++.++ .|++|++.. +......... .....+........+++++++.++++++. +
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~--~~~~~l~~~~--~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~ 314 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT--GAATQLCRRE--EEFAGPLWTPGMRWFAPLANGLIAVVHGK-G 314 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT--CCEEESSCCS--SBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCC--Cceeeccccc--ccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence 468899999999999888888888 555555432 2221111100 00001111100112344489999999998 9
Q ss_pred cEEEEEcc
Q 010871 391 NLSFFSVA 398 (498)
Q Consensus 391 ~i~iwd~~ 398 (498)
.+++|.+.
T Consensus 315 ~~~l~~~d 322 (662)
T 3azo_A 315 AAVLGILD 322 (662)
T ss_dssp SCEEEEEE
T ss_pred ccEEEEEE
Confidence 99999554
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=8.8e-13 Score=122.80 Aligned_cols=238 Identities=8% Similarity=0.010 Sum_probs=160.0
Q ss_pred ecccccEEEEEEecCCCC-EEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 010871 184 DQCKAAVTILKFGHMSSD-LLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK 262 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~-~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 262 (498)
..+.....+++|+| +++ +++++..++.|.+|+..+ . ...+..+...+.+++++++|+++++...++.|.+||..+
T Consensus 24 ~~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~-~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 24 ADGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDG-Q--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp ECCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTS-C--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred ecCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCC-C--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 34455678999999 777 888888999999999987 3 566777888899999999999888777778999999988
Q ss_pred CcEEEEEecC-----CCeEEEEEEcCCCcEEEE----Ee-------------CCCcEEEEEcCCCcEEEEeecCCCeEEE
Q 010871 263 GDCIRVIYGV-----SSQLCIRFHPVNNNFLSV----GN-------------ANKEITVFNFSTGRIIKKLVVDSEVTSM 320 (498)
Q Consensus 263 ~~~~~~~~~~-----~~v~~i~~~~~~~~~l~~----g~-------------~dg~i~iwd~~~~~~~~~~~~~~~i~~l 320 (498)
++........ ..+..+++.|++ +++++ |+ ..+.|..++.. ++.............+
T Consensus 100 g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi 177 (296)
T 3e5z_A 100 GEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGL 177 (296)
T ss_dssp CCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEE
T ss_pred CcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccE
Confidence 8765443321 234578899855 66665 32 13456666655 5554444556678999
Q ss_pred EEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 321 DHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 321 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
+|+|+++.+++.+.++.|++|++... +... . ..+++...
T Consensus 178 ~~s~dg~~lv~~~~~~~i~~~~~~~~-g~~~---------------~-----------------------~~~~~~~~-- 216 (296)
T 3e5z_A 178 AFLPSGNLLVSDTGDNATHRYCLNAR-GETE---------------Y-----------------------QGVHFTVE-- 216 (296)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECSS-SCEE---------------E-----------------------EEEEECCS--
T ss_pred EECCCCCEEEEeCCCCeEEEEEECCC-CcCc---------------C-----------------------CCeEeeCC--
Confidence 99999998877778899999987511 1000 0 00011000
Q ss_pred ccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEE-cCCCCE
Q 010871 401 IQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAW-NHGENL 479 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~-sp~~~~ 479 (498)
...... +.+. ++|+++++. ++.|.+|+... ..+..+..+.. +++++| .|+++.
T Consensus 217 -------------~~~p~~--i~~d-----~~G~l~v~~--~~~v~~~~~~g---~~~~~~~~~~~-~~~~~f~~~d~~~ 270 (296)
T 3e5z_A 217 -------------PGKTDG--LRVD-----AGGLIWASA--GDGVHVLTPDG---DELGRVLTPQT-TSNLCFGGPEGRT 270 (296)
T ss_dssp -------------SSCCCS--EEEB-----TTSCEEEEE--TTEEEEECTTS---CEEEEEECSSC-CCEEEEESTTSCE
T ss_pred -------------CCCCCe--EEEC-----CCCCEEEEc--CCeEEEECCCC---CEEEEEECCCC-ceeEEEECCCCCE
Confidence 000011 1333 378766655 77899998862 24566666666 889999 588888
Q ss_pred EEEEeCCCeEEEeecC
Q 010871 480 LASSDLYGIVIVWKRA 495 (498)
Q Consensus 480 l~s~~~Dg~i~iW~~~ 495 (498)
|++++.++ +.-++.+
T Consensus 271 L~v~t~~~-l~~~~~~ 285 (296)
T 3e5z_A 271 LYMTVSTE-FWSIETN 285 (296)
T ss_dssp EEEEETTE-EEEEECS
T ss_pred EEEEcCCe-EEEEEcc
Confidence 88887764 3333443
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=5.7e-13 Score=139.87 Aligned_cols=246 Identities=9% Similarity=0.022 Sum_probs=156.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCC-----cEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCc--------
Q 010871 230 HSKDVTDFDFSSNNQYIASSSMDK-----TVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKE-------- 296 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~-------- 296 (498)
|...+..++|||||++|+.++.++ .|++||+.+++.+.....+..+..++|+|++. .|+.+..++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGK-GMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSS-EEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCC-EEEEEEECCccccccccc
Confidence 445688999999999998765543 89999999998776443333456799999765 4544545544
Q ss_pred --------EEEEEcCCCcE--EEEee---cCCCeEEEEEcCCCCEEEEEcC-----CCeEEEEEccC------Ccccccc
Q 010871 297 --------ITVFNFSTGRI--IKKLV---VDSEVTSMDHDHTGQLLFCGDA-----QGCIYSISMES------HSGALSR 352 (498)
Q Consensus 297 --------i~iwd~~~~~~--~~~~~---~~~~i~~l~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~~~~~~ 352 (498)
|++|++.+++. ...+. +...+..+.|+|+|++|+.++. +..|++||+.. .......
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 99999988762 22222 3455789999999998887764 56899999875 2111111
Q ss_pred cccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC----cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeee
Q 010871 353 SHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG----NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLL 428 (498)
Q Consensus 353 ~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (498)
...+...+.. .+ +++|..|+..+..+ .|.+||+....... .................|+
T Consensus 282 ------l~~~~~~~~~-~~-----s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~--- 344 (710)
T 2xdw_A 282 ------LIDNFEGEYD-YV-----TNEGTVFTFKTNRHSPNYRLINIDFTDPEESK--WKVLVPEHEKDVLEWVACV--- 344 (710)
T ss_dssp ------EECSSSSCEE-EE-----EEETTEEEEEECTTCTTCEEEEEETTSCCGGG--CEEEECCCSSCEEEEEEEE---
T ss_pred ------eeCCCCcEEE-EE-----eccCCEEEEEECCCCCCCEEEEEeCCCCCccc--ceeccCCCCCCeEEEEEEE---
Confidence 1122222222 12 37788777766543 58899987542111 1111111111111112333
Q ss_pred eccCCCEEEEEeCCCc--EEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEE-e---CCCeEEEeecCCC
Q 010871 429 SLEKGEYIVAGSEDSN--VYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASS-D---LYGIVIVWKRAKT 497 (498)
Q Consensus 429 ~~~~~~~l~~gs~dg~--I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~---~Dg~i~iW~~~~~ 497 (498)
+++.++++...++. |++|++.+++ .+..+..+.+.|..++++|++..|+.. + ..+.|++||+.++
T Consensus 345 --~~~~lv~~~~~~g~~~l~~~~~~~g~--~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 345 --RSNFLVLCYLHDVKNTLQLHDLATGA--LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp --TTTEEEEEEEETTEEEEEEEETTTCC--EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred --cCCEEEEEEEECCEEEEEEEECCCCC--EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 36778888888884 6667775543 456677777789999999998766533 2 3478999998764
No 183
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.60 E-value=1e-11 Score=119.17 Aligned_cols=278 Identities=9% Similarity=-0.047 Sum_probs=172.8
Q ss_pred CCCEEEEEeC--CC---cEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEECCCC
Q 010871 199 SSDLLAYGAS--DG---TLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS----------MDKTVRVWELTKG 263 (498)
Q Consensus 199 ~~~~lasg~~--dg---~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s----------~dg~v~iwd~~~~ 263 (498)
+++++.+... .. .|.++|..+ .+.+..+.....+ .++++|||++|+.+. .++.|.+||..+.
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t-~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGS-GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCC-CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 5565555542 22 789999988 6777777654444 999999999998875 3678999999999
Q ss_pred cEEEEEecC--------CCeEEEEEEcCCCcEEEEEeC-CCcEEEEEcCCCcEEEE-eecCCCeEEEEEcCCC-CEEEEE
Q 010871 264 DCIRVIYGV--------SSQLCIRFHPVNNNFLSVGNA-NKEITVFNFSTGRIIKK-LVVDSEVTSMDHDHTG-QLLFCG 332 (498)
Q Consensus 264 ~~~~~~~~~--------~~v~~i~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~-~~~~~~i~~l~~~~~~-~~l~~~ 332 (498)
+.+..+... .....+.++|++..++++... ++.|.++| .+++.+.. +..... +.+.+.+ +.+++.
T Consensus 108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~ 183 (373)
T 2mad_H 108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLL 183 (373)
T ss_pred cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEE
Confidence 888877643 234578999976544444433 57899999 99999888 654433 3444554 456677
Q ss_pred cCCCeEEEEEccCCcccccccccccccCCCcccee-eEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEee
Q 010871 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVT-TVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSL 411 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~ 411 (498)
+.||.+.+++. ....... ....... ....++. ...+. +++..++..+.++.+.+.|+......... ..
T Consensus 184 ~~dg~~~~vd~-~g~~~~~-~~~~~~~-~~~~p~~~~~~~~-----~~~~~~~~~~~~~~v~vid~~~~~~~v~~---~~ 252 (373)
T 2mad_H 184 CAQGGLAKTDH-AGGAAGA-GLVGAML-TAAQNLLTQPAQA-----NKSGRIVWPVYSGKILQADISAAGATNKA---PI 252 (373)
T ss_pred cCCCCEEEEEC-CCcEEEE-Eeccccc-cCCcceeecceeE-----ecCCEEEEEcCCceEEEEeccCCcceEee---ee
Confidence 78999999988 3322211 0000000 1111111 11122 44544444457889999998643211111 11
Q ss_pred ccCC----ceeeeEEEEeeeeeccCCCEEEEEeC----------CCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCC
Q 010871 412 KLAP----RVHSIRASFCPLLSLEKGEYIVAGSE----------DSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE 477 (498)
Q Consensus 412 ~~~~----~~~~~~~~~~~~~~~~~~~~l~~gs~----------dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 477 (498)
.... ........+.++.++++++.++++.. .+.|.++|+.+.+ .+..+.. .....+++|+|||
T Consensus 253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~--vv~~i~~-g~~p~~i~~s~Dg 329 (373)
T 2mad_H 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ--TSSQISL-GHDVDAISVAQDG 329 (373)
T ss_pred eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE--EEEEEEC-CCCcCeEEECCCC
Confidence 1000 00000001222344458887777653 3579999999844 5666643 3358999999999
Q ss_pred C-EEEEEe-CCCeEEEeecCCC
Q 010871 478 N-LLASSD-LYGIVIVWKRAKT 497 (498)
Q Consensus 478 ~-~l~s~~-~Dg~i~iW~~~~~ 497 (498)
+ +|+++. .++.|.+||+++.
T Consensus 330 ~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 330 GPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CeEEEEEcCCCCeEEEEECCCC
Confidence 9 788877 5899999998865
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.60 E-value=1.8e-14 Score=139.94 Aligned_cols=253 Identities=9% Similarity=0.001 Sum_probs=154.7
Q ss_pred EEcCCCCceeEEeecCCCC-----eEEEEEccCCCEEEEEeCC---CcEEEEECCCCcEEEEEecCCCeE-EEEEEcCCC
Q 010871 215 CTVSDPPKVIKLLNGHSKD-----VTDFDFSSNNQYIASSSMD---KTVRVWELTKGDCIRVIYGVSSQL-CIRFHPVNN 285 (498)
Q Consensus 215 wd~~~~~~~~~~~~~h~~~-----V~~l~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~-~i~~~~~~~ 285 (498)
.|..+ +.....+..+... +.+++|+|||++|+.+... ..|.+||+.+++......+..... .+.|+|++
T Consensus 15 ~d~~~-g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg- 92 (396)
T 3c5m_A 15 VDSDT-QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE- 92 (396)
T ss_dssp ECTTT-CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS-
T ss_pred ecCCC-CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC-
Confidence 35555 5555666555433 7788999999998876543 368888998887655444433333 37899965
Q ss_pred cEEEEEeCCCcEEEEEcCCCcEEEEeecCCC-eEE-------------------EEEcCCCCEEEEE-----cCCCeEEE
Q 010871 286 NFLSVGNANKEITVFNFSTGRIIKKLVVDSE-VTS-------------------MDHDHTGQLLFCG-----DAQGCIYS 340 (498)
Q Consensus 286 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-i~~-------------------l~~~~~~~~l~~~-----~~dg~i~i 340 (498)
+.|+.++.++.|++||+.+++.......... ... +.|+|+++.++.+ ..+..|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 5666667788999999998876655542222 112 3456777765544 35668888
Q ss_pred EEccCCcccccccccccccCCCccceeeEEEeEeeEcC-CCcEEEEEEcC------CcEEEEEccccccceeeEeEeecc
Q 010871 341 ISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA-GGPVLLTCTQD------GNLSFFSVALEIQGYLTFRCSLKL 413 (498)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~-~~~~l~t~s~d------g~i~iwd~~~~~~~~~~~~~~~~~ 413 (498)
||+........ ..+...+..+.|+ | ++..|+..+.+ ..|.+||+..... ......
T Consensus 173 ~d~~~g~~~~~--------~~~~~~~~~~~~s-----p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~ 234 (396)
T 3c5m_A 173 VDIETGELEVI--------HQDTAWLGHPIYR-----PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-----RKIKEH 234 (396)
T ss_dssp EETTTCCEEEE--------EEESSCEEEEEEE-----TTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-----EESSCC
T ss_pred EECCCCcEEee--------ccCCcccccceEC-----CCCCCEEEEEecCCCCCCCceEEEEECCCCce-----eEeecc
Confidence 98865332211 1122334445444 8 78877776654 3577787754311 111111
Q ss_pred CCceeeeEEEEeeeeeccCCCEEEEEeCC-----CcEEEEECCCCCccceeeecCCCCCeEEEEEcC-CCCEEEEEe---
Q 010871 414 APRVHSIRASFCPLLSLEKGEYIVAGSED-----SNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH-GENLLASSD--- 484 (498)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----g~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~--- 484 (498)
..........|+| +|++|+.++.+ +.|++||+.+++...+..+.+ .. +.|+| +|++|++++
T Consensus 235 ~~~~~~~~~~~sp-----dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 235 AEGESCTHEFWIP-----DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp CTTEEEEEEEECT-----TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC
T ss_pred CCCccccceEECC-----CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCc
Confidence 0111222234554 99987776554 449999998865433333322 23 89999 999888765
Q ss_pred -------------CCCeEEEeecCCC
Q 010871 485 -------------LYGIVIVWKRAKT 497 (498)
Q Consensus 485 -------------~Dg~i~iW~~~~~ 497 (498)
.++.|++|+++++
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp ----------CCCCCCEEEEEETTTT
T ss_pred ceeeccccccccCCCCcEEEEecccC
Confidence 3478999998754
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=9.1e-14 Score=145.53 Aligned_cols=274 Identities=9% Similarity=-0.015 Sum_probs=161.8
Q ss_pred cCCCCEEEEEeCCC---cEEEEE--cCCCCceeEEee------cCCCCeEEEEEccCCCEEE-----EEeCCCcEEEEEC
Q 010871 197 HMSSDLLAYGASDG---TLTVCT--VSDPPKVIKLLN------GHSKDVTDFDFSSNNQYIA-----SSSMDKTVRVWEL 260 (498)
Q Consensus 197 p~~~~~lasg~~dg---~i~iwd--~~~~~~~~~~~~------~h~~~V~~l~~s~~~~~l~-----s~s~dg~v~iwd~ 260 (498)
| +|++++....++ .-.||- ... +.....+. +|...+.+++|||||++|+ .|+.+.+|++||+
T Consensus 77 ~-dG~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 77 R-RNGRFFYVRTHKDKEKAILYWRQGES-GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp E-ETTEEEEEEECTTCSSCEEEEEESTT-SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred E-ECCEEEEEEEcCCCeEEEEEEEcCCC-CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 5 677777665543 344444 333 33333332 4556799999999999988 3444568999999
Q ss_pred CCCcEE-EEEecCCCeEEEEEEcCCCcEEEEEeCCCc-------------EEEEEcCCCc----EEEEee-cCCCeEEEE
Q 010871 261 TKGDCI-RVIYGVSSQLCIRFHPVNNNFLSVGNANKE-------------ITVFNFSTGR----IIKKLV-VDSEVTSMD 321 (498)
Q Consensus 261 ~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~-------------i~iwd~~~~~----~~~~~~-~~~~i~~l~ 321 (498)
.+++.+ ...........++|+|++. .|+.++.+.. |++|++.+++ .+.... +...+..+.
T Consensus 155 ~tg~~~~~~~~~~~~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 155 DSGEWSKVDVIEGGKYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp TTCCBCSSCCBSCCTTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred CCCCCcCCcccCcccccceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence 999864 2111111225789999764 5555556555 9999998876 222222 345788999
Q ss_pred EcCCCCEEEEEcCCC----eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc----CCcEE
Q 010871 322 HDHTGQLLFCGDAQG----CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ----DGNLS 393 (498)
Q Consensus 322 ~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~----dg~i~ 393 (498)
|+|+|++|+.++.++ .|++++... +..... ..+...+....+ ++|. |+..+. ++.|.
T Consensus 234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~--~~~~~l------~~~~~~~~~~~~------~~g~-l~~~s~~~~~~~~l~ 298 (695)
T 2bkl_A 234 LSRDGKYLFVYILRGWSENDVYWKRPGE--KDFRLL------VKGVGAKYEVHA------WKDR-FYVLTDEGAPRQRVF 298 (695)
T ss_dssp ECTTSCCEEEEEEETTTEEEEEEECTTC--SSCEEE------EECSSCCEEEEE------ETTE-EEEEECTTCTTCEEE
T ss_pred ECCCCCEEEEEEeCCCCceEEEEEcCCC--CceEEe------ecCCCceEEEEe------cCCc-EEEEECCCCCCCEEE
Confidence 999999888776555 566664322 221111 112222222222 4566 444443 57899
Q ss_pred EEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCC-CCCeEEEE
Q 010871 394 FFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGH-RFPVVAVA 472 (498)
Q Consensus 394 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h-~~~V~~l~ 472 (498)
+||+........ ................++ ++.++++...|+..+||.+... ......+..+ .+.|..++
T Consensus 299 ~~d~~~~~~~~~--~~l~~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~ 369 (695)
T 2bkl_A 299 EVDPAKPARASW--KEIVPEDSSASLLSVSIV------GGHLSLEYLKDATSEVRVATLK-GKPVRTVQLPGVGAASNLM 369 (695)
T ss_dssp EEBTTBCSGGGC--EEEECCCSSCEEEEEEEE------TTEEEEEEEETTEEEEEEEETT-CCEEEECCCSSSSEECCCB
T ss_pred EEeCCCCCccCC--eEEecCCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEeCC-CCeeEEecCCCCeEEEEee
Confidence 999875421111 111111111111111222 6788889999998887765521 1234455544 56788889
Q ss_pred EcCCCCEEEEE----eCCCeEEEeecCCC
Q 010871 473 WNHGENLLASS----DLYGIVIVWKRAKT 497 (498)
Q Consensus 473 ~sp~~~~l~s~----~~Dg~i~iW~~~~~ 497 (498)
++|++..|+.. ...++|++||+.++
T Consensus 370 ~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 370 GLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp SCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred cCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 99998876632 23578999998765
No 186
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.58 E-value=1.2e-12 Score=124.21 Aligned_cols=284 Identities=11% Similarity=0.045 Sum_probs=178.6
Q ss_pred EecCCCCEEEEEeC-----CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEE
Q 010871 195 FGHMSSDLLAYGAS-----DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS----------MDKTVRVWE 259 (498)
Q Consensus 195 ~sp~~~~~lasg~~-----dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s----------~dg~v~iwd 259 (498)
..| ++..+++... ++.|.+.|..+ .+.+..+.....+ . +.++|||++|+.+. .++.|.+||
T Consensus 40 ~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t-~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 40 PAP-DARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCC-CTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred cCC-CCCEEEEEcCcccCCCCEEEEEECCC-CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 345 6776666654 67999999998 7778777755555 4 99999999887765 367899999
Q ss_pred CCCCcEEEEEecCC--------CeEEEEEEcCCCcEEEEEe-CCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEE
Q 010871 260 LTKGDCIRVIYGVS--------SQLCIRFHPVNNNFLSVGN-ANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLF 330 (498)
Q Consensus 260 ~~~~~~~~~~~~~~--------~v~~i~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 330 (498)
..+++.+..+.... ....+.++|++..++++.. .++.|.++|+.+++.+.++..... ...+....+.++
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~ 193 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFF 193 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeE
Confidence 99999998886432 4557999997755454443 368999999999999999865442 222333345677
Q ss_pred EEcCCCeEEEEEccCCcccccccccccccCCCccceee-EEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeE
Q 010871 331 CGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTT-VQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRC 409 (498)
Q Consensus 331 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~ 409 (498)
+.+.||.+.+.++........ ... ..+.....++.. ..|. .++|++++ .+.+|.|.++|+........ ...
T Consensus 194 ~~~~DG~~~~v~~~~~g~v~~-~~~-~~~~~~~~~~~~~~~~~----~~dG~~~~-vs~~g~V~v~d~~~~~~~v~-~~~ 265 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTPEI-THT-EVFHPEDEFLINHPAYS----QKAGRLVW-PTYTGKIHQIDLSSGDAKFL-PAV 265 (386)
T ss_dssp EEETTSCEEEEECCSSSCCEE-EEC-CCCSCTTSCBCSCCEEE----TTTTEEEE-EBTTSEEEEEECTTSSCEEC-CCE
T ss_pred EECCCCCEEEEECCCCCeEEE-eec-ceeccccccccccceeE----cCCCcEEE-EeCCCEEEEEECCCCcceee-cce
Confidence 778888888888765222111 000 011111122211 1221 15675555 56689999999875421110 001
Q ss_pred e-ec---cCCceeeeEEEEeeeeeccCCCEEEEEeC----------CCcEEEEECCCCCccceeeecCCCCCeEEEEEcC
Q 010871 410 S-LK---LAPRVHSIRASFCPLLSLEKGEYIVAGSE----------DSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH 475 (498)
Q Consensus 410 ~-~~---~~~~~~~~~~~~~~~~~~~~~~~l~~gs~----------dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp 475 (498)
. .. ...... ...+.++.++++++.++.... .+.|.++|+.+.+ .+..+.. ...+.+|++++
T Consensus 266 ~~~~~~~~~~g~~--p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k--v~~~i~v-g~~~~~lavs~ 340 (386)
T 3sjl_D 266 EALTEAERADGWR--PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--RLAKFEM-GHEIDSINVSQ 340 (386)
T ss_dssp ESSCHHHHHTTEE--ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEE-EEEECEEEECS
T ss_pred ecccccccccccc--CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe--EEEEEEC-CCCcceEEECC
Confidence 0 00 000000 001122333347777777542 2479999999954 4555543 23688999999
Q ss_pred CCC-EEEEE-eCCCeEEEeecCCC
Q 010871 476 GEN-LLASS-DLYGIVIVWKRAKT 497 (498)
Q Consensus 476 ~~~-~l~s~-~~Dg~i~iW~~~~~ 497 (498)
|++ +|+++ ..++.|.++|..++
T Consensus 341 D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 341 DEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCCeEEEEEcCCCCeEEEEECCCC
Confidence 996 66664 45899999998875
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.58 E-value=7.1e-12 Score=118.68 Aligned_cols=208 Identities=7% Similarity=0.033 Sum_probs=142.1
Q ss_pred eeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCC----CcEEE
Q 010871 182 IFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD----KTVRV 257 (498)
Q Consensus 182 ~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d----g~v~i 257 (498)
.+.++...+.+++|++ ++++++++..++.|.+||..+ ++.......+...+.+++|+++|+++++...+ +.|.+
T Consensus 39 ~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPET-KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTT-CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred EEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCC-CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 3455666789999999 888888888899999999986 55444444567889999999999888877666 68999
Q ss_pred EECCCCcEEEEEec---CCCeEEEEEEcCCCcEEEEEeC------CCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCE
Q 010871 258 WELTKGDCIRVIYG---VSSQLCIRFHPVNNNFLSVGNA------NKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQL 328 (498)
Q Consensus 258 wd~~~~~~~~~~~~---~~~v~~i~~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~ 328 (498)
||..++.....+.. ...+..+++.|++ .++++... .+.|..+|..+++..........+..++|+|+++.
T Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~ 195 (333)
T 2dg1_A 117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKV 195 (333)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSE
T ss_pred EeCCCCEEEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCE
Confidence 99988776544431 2357889999965 56655543 35667777665555443344456889999999985
Q ss_pred EE-EEcCCCeEEEEEccCCccccccc--ccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 329 LF-CGDAQGCIYSISMESHSGALSRS--HRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 329 l~-~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
|+ +...++.|++|+++......... ........+ ..+.. ++++++|+++++...++.|.+||..
T Consensus 196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~-----i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 196 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDS-----CCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEE-----EEEBTTCCEEEEEETTTEEEEECTT
T ss_pred EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCc-----eEECCCCCEEEEEcCCCEEEEECCC
Confidence 54 55567899999985322111100 000000111 23333 4445899988888888999999974
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=1.5e-12 Score=119.64 Aligned_cols=216 Identities=12% Similarity=0.109 Sum_probs=152.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCC--CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecC--CCe
Q 010871 242 NNQYIASSSMDKTVRVWELTKGDCIRVIYGVS--SQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD--SEV 317 (498)
Q Consensus 242 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~i 317 (498)
.++.|++++.|+.|.+||.++|+.+..+..+. .+.++.+.|++ ++++ +.++.|..||. +++.+..+... ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 35689999999999999999999999998775 57788999955 6666 35788999999 89999998653 578
Q ss_pred EEEEEcCCCCEEEEEcC-CCeEEEEEccCCcccccccccccc-cCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEE
Q 010871 318 TSMDHDHTGQLLFCGDA-QGCIYSISMESHSGALSRSHRHRT-TGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFF 395 (498)
Q Consensus 318 ~~l~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iw 395 (498)
.++.+.++|+++++.+. ++.|..++.+ +.......... ...+......+. ..++|+++++...++.|..|
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~---Gk~l~~~~~~~~~~~~~~~~~~v~-----~~~~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK---GEVLSKTEFETGIERPHAQFRQIN-----KNKKGNYLVPLFATSEVREI 151 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT---SCEEEEEEECCSCSSGGGSCSCCE-----ECTTSCEEEEETTTTEEEEE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC---CCEEEEEeccCCCCcccccccCce-----ECCCCCEEEEecCCCEEEEE
Confidence 89999999999998877 7778777643 22222111100 011111222233 33899999999999999999
Q ss_pred EccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCC------CCeE
Q 010871 396 SVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHR------FPVV 469 (498)
Q Consensus 396 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~------~~V~ 469 (498)
|.. +. ...... ..... ...... ++|++++++..++.|..+|..+++ .+.++..+. ..+.
T Consensus 152 d~~-G~---~~w~~~--~~~~~--~~~~~~-----~~g~~~v~~~~~~~v~~~d~~tG~--~~w~~~~~~~~~~~l~~~~ 216 (276)
T 3no2_A 152 APN-GQ---LLNSVK--LSGTP--FSSAFL-----DNGDCLVACGDAHCFVQLNLESNR--IVRRVNANDIEGVQLFFVA 216 (276)
T ss_dssp CTT-SC---EEEEEE--CSSCC--CEEEEC-----TTSCEEEECBTTSEEEEECTTTCC--EEEEEEGGGSBSCCCSEEE
T ss_pred CCC-CC---EEEEEE--CCCCc--cceeEc-----CCCCEEEEeCCCCeEEEEeCcCCc--EEEEecCCCCCCccccccc
Confidence 986 32 222222 11111 112222 489999999988899999999865 456664332 2378
Q ss_pred EEEEcCCCCEEEEEe
Q 010871 470 AVAWNHGENLLASSD 484 (498)
Q Consensus 470 ~l~~sp~~~~l~s~~ 484 (498)
.++..++|.++++..
T Consensus 217 ~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 217 QLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred cceEcCCCCEEEEec
Confidence 888899999888773
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=4.5e-12 Score=119.83 Aligned_cols=254 Identities=13% Similarity=0.078 Sum_probs=167.5
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
....+++. ++.++++...++.|.+||..+ .+.+..+. .......++++++++.+++...++.|.+||..+++....
T Consensus 45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t-~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINT-FKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp CEEEEEEE--TTEEEEEEGGGTEEEEEETTT-CCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred cceEEEEE--CCEEEEEEcCCCEEEEEECcc-cEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 45667774 456666677789999999998 77777775 346789999999985555554889999999999998888
Q ss_pred EecCC------CeEEEEEEcCCCcEEEEEe-CCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCC------
Q 010871 269 IYGVS------SQLCIRFHPVNNNFLSVGN-ANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQ------ 335 (498)
Q Consensus 269 ~~~~~------~v~~i~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d------ 335 (498)
+.... .+..+++ +++.++++.. .++.|.++|+.+++.+..+........++++++|++++++..+
T Consensus 121 i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp EECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred EEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCcc
Confidence 87555 5556676 3555555544 4889999999999998888766677889999999977776654
Q ss_pred ----CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEee
Q 010871 336 ----GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSL 411 (498)
Q Consensus 336 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~ 411 (498)
+.|.++|....+.. .... .........+.+ +|+++.|+++.. .|.+||..++...... ..
T Consensus 199 ~~~~~~v~~id~~t~~v~--~~~~----~~~g~~p~~la~-----~~d~~~lyv~~~--~v~~~d~~t~~~~~~~---~~ 262 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVE--KQFK----FKLGDWPSEVQL-----NGTRDTLYWINN--DIWRMPVEADRVPVRP---FL 262 (328)
T ss_dssp CBCCCEEEEEETTTTEEE--EEEE----CCTTCCCEEEEE-----CTTSCEEEEESS--SEEEEETTCSSCCSSC---SB
T ss_pred ccCCceEEEEECCCCeEE--EEEe----cCCCCCceeEEE-----ecCCCEEEEEcc--EEEEEECCCCceeeee---ee
Confidence 78999987643321 1110 000113444444 499998888755 8999998754321000 00
Q ss_pred ccCCceeeeEEEEeeeeeccCCCEEEEE----eCCCcEEEEECCCCCccceeeecCCCCCeEEEEE
Q 010871 412 KLAPRVHSIRASFCPLLSLEKGEYIVAG----SEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAW 473 (498)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g----s~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~ 473 (498)
.. .......+.+.| .++.++++. ..++.|.+||.. ++ .+..+.. ......++|
T Consensus 263 ~~-~~~~p~gi~vdp----~~g~lyva~~~~y~~~~~V~v~d~~-g~--~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 263 EF-RDTKYYGLTVNP----NNGEVYVADAIDYQQQGIVYRYSPQ-GK--LIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp CC-CSSCEEEEEECT----TTCCEEEEECTTSSSEEEEEEECTT-CC--EEEEEEE-EESEEEEEE
T ss_pred cC-CCCceEEEEEcC----CCCeEEEEcccccccCCEEEEECCC-CC--EEEEEEe-ccCcceEEE
Confidence 00 011112223333 256666666 568899999998 44 3555543 233455555
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.53 E-value=1e-10 Score=108.52 Aligned_cols=276 Identities=8% Similarity=-0.024 Sum_probs=179.4
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
...+.++++.+ ++.+.++...++.|.+||... ......+..+...+.++++.+++.++++...++.|..+|.. ++..
T Consensus 19 ~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 19 DSGPYGITSSE-DGKVWFTQHKANKISSLDQSG-RIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCcceeeECC-CCCEEEEcCCCCeEEEECCCC-ceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 45788999999 888888777789999999872 22222233445679999999999887777667889999988 6543
Q ss_pred EEEec---CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE-ee-cCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q 010871 267 RVIYG---VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK-LV-VDSEVTSMDHDHTGQLLFCGDAQGCIYSI 341 (498)
Q Consensus 267 ~~~~~---~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~ 341 (498)
.+.. ...+..+++.++ +.++++...++.|..+|.. ++.... +. ....+.+++++++++++++...++.|..+
T Consensus 96 -~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 96 -EYPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp -EEECSSTTCCEEEEEECST-TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred -EecCCCCCCCCccceECCC-CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 3332 246778888874 4666666667899999987 655432 22 34678999999999977777778889999
Q ss_pred EccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeE
Q 010871 342 SMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR 421 (498)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (498)
+... .... .. .......+..+.+. +++.++++....+.|.+|+.... ... .... ........
T Consensus 173 ~~~g---~~~~-~~---~~~~~~~~~~i~~d-----~~g~l~v~~~~~~~i~~~~~~g~----~~~-~~~~-~~~~~~~~ 234 (300)
T 2qc5_A 173 TNTG---KLEE-YP---LPTNAAAPVGITSG-----NDGALWFVEIMGNKIGRITTTGE----ISE-YDIP-TPNARPHA 234 (300)
T ss_dssp CTTC---CEEE-EE---CSSTTCCEEEEEEC-----TTSSEEEEETTTTEEEEECTTCC----EEE-EECS-STTCCEEE
T ss_pred CCCC---cEEE-ee---CCCCCCCcceEEEC-----CCCCEEEEccCCCEEEEEcCCCc----EEE-EECC-CCCCCceE
Confidence 8732 1111 00 11222334555444 88887777666778999987321 111 1111 11111222
Q ss_pred EEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 422 ASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 422 ~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+.+. ++|+++++...++.|..|+.. +... ...+......+.++++.++|.+.++.. . .|..++.+
T Consensus 235 i~~d-----~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 235 ITAG-----KNSEIWFTEWGANQIGRITND-NTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEC-----STTCEEEEETTTTEEEEECTT-SCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EEEC-----CCCCEEEeccCCCeEEEECCC-CcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 2333 488877776667899999984 3321 222333456689999999998666554 4 67766654
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.52 E-value=7.8e-12 Score=119.06 Aligned_cols=236 Identities=9% Similarity=0.104 Sum_probs=144.9
Q ss_pred ccEEEEEEecCCCCEEEEEeCC---C--cEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCC----------
Q 010871 188 AAVTILKFGHMSSDLLAYGASD---G--TLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD---------- 252 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~d---g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d---------- 252 (498)
..+..++|+| +|++||.++.+ + .|.+|++.+ ++.......+ . +..++|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~-g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 59 ENATMPRISP-DGKKIAFMRANEEKKVSEIWVADLET-LSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp ESCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTT-TEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred ccCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCC-CceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence 3578899999 89988887754 3 377778876 5544444433 3 9999999999988887642
Q ss_pred -----------------CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCC-------cEEEEEcCCCcEE
Q 010871 253 -----------------KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANK-------EITVFNFSTGRII 308 (498)
Q Consensus 253 -----------------g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg-------~i~iwd~~~~~~~ 308 (498)
..|.+||+.+++.+..+... .+..+.|+|++ +++++..++ ...||.+.+++..
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 211 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEE 211 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEE
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceE
Confidence 56899999988774444443 77789999966 777665542 3344444455544
Q ss_pred EEeecCCCeEEEEEcCCCCEEEEEcCC--------CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC
Q 010871 309 KKLVVDSEVTSMDHDHTGQLLFCGDAQ--------GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG 380 (498)
Q Consensus 309 ~~~~~~~~i~~l~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~ 380 (498)
....+ ..+..+ +|+|+.|+.++.+ ..|++|| . +..... ...+...+.. .+.++ ++
T Consensus 212 ~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~---~~~~~l-----~~~~~~~~~~----~~~~s-dg 274 (347)
T 2gop_A 212 KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-G---KEVMGI-----LDEVDRGVGQ----AKIKD-GK 274 (347)
T ss_dssp EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-S---SCEEES-----STTCCSEEEE----EEEET-TE
T ss_pred EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-C---CceEec-----cccCCcccCC----ccEEc-Cc
Confidence 33344 455544 8999988776643 3677776 2 111111 1233344443 13445 67
Q ss_pred cEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcE-EEEECCCCCcccee
Q 010871 381 PVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNV-YFYDLAKPKHSCVN 459 (498)
Q Consensus 381 ~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I-~iwd~~~~~~~~~~ 459 (498)
++++++.++.+++| +..+ .. .........+ ..+.+++ .++++++.++.. .+|.+. ++ ..
T Consensus 275 -~~~~~~~~~~~~l~-~~~g---~~--~~~~~~~~~v-------~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~---~~ 334 (347)
T 2gop_A 275 -VYFTLFEEGSVNLY-IWDG---EI--KPIAKGRHWI-------MGFDVDE--IVVYLKETATRLRELFTWD-GE---EK 334 (347)
T ss_dssp -EEEEEEETTEEEEE-EESS---SE--EEEECSSSEE-------EEEEESS--SEEEEEECSSSCCEEEEES-SS---EE
T ss_pred -EEEEEecCCcEEEE-EcCC---ce--EEEecCCCeE-------EeeeeeC--cEEEEEcCCCChHHheEeC-Cc---EE
Confidence 88999999999999 8722 11 1111111111 2222334 677777777654 677665 33 44
Q ss_pred eecCCCCC
Q 010871 460 KLQGHRFP 467 (498)
Q Consensus 460 ~~~~h~~~ 467 (498)
.+..|...
T Consensus 335 ~lt~~n~~ 342 (347)
T 2gop_A 335 QLTDYNDP 342 (347)
T ss_dssp ECCCTTST
T ss_pred EeccccHh
Confidence 45555543
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.51 E-value=6.6e-13 Score=138.98 Aligned_cols=248 Identities=9% Similarity=0.024 Sum_probs=151.5
Q ss_pred ecccccEEEEEEecCCCCEEEE-----EeCCCcEEEEEcCCCCceeEEeecCCCCe--EEEEEccCCCEEEEEeCCCc--
Q 010871 184 DQCKAAVTILKFGHMSSDLLAY-----GASDGTLTVCTVSDPPKVIKLLNGHSKDV--TDFDFSSNNQYIASSSMDKT-- 254 (498)
Q Consensus 184 ~~h~~~V~~v~~sp~~~~~las-----g~~dg~i~iwd~~~~~~~~~~~~~h~~~V--~~l~~s~~~~~l~s~s~dg~-- 254 (498)
.+|...+..++||| +|++||. |+.+..|++||+.+ ++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~t-g~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 117 KDGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDS-GEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPS 192 (695)
T ss_dssp SSSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTT-CCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred cCCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCC-CCCcC--CcccCcccccceEEecCCCEEEEEEecCCCC
Confidence 45667899999999 9998884 44457899999998 44320 1122223 68999999999999998876
Q ss_pred -----------EEEEECCCCcE--EEEEe--cC-CCeEEEEEEcCCCcEEEEEeCC-C--cEEEEEcCCCcEEEEeecCC
Q 010871 255 -----------VRVWELTKGDC--IRVIY--GV-SSQLCIRFHPVNNNFLSVGNAN-K--EITVFNFSTGRIIKKLVVDS 315 (498)
Q Consensus 255 -----------v~iwd~~~~~~--~~~~~--~~-~~v~~i~~~~~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~~~ 315 (498)
|++|++.++.. ...+. .+ ..+..+.|+|++..++++...+ + .|.+|+..+++......+..
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 272 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG 272 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS
T ss_pred CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC
Confidence 99999998762 22332 23 3577899999876555555433 2 67777766665544445555
Q ss_pred CeEEEEEcCCCCEEEEEc---CCCeEEEEEccCCcccccccccccccCCC-ccceeeEEEeEeeEcCCCcEEEEEEcCCc
Q 010871 316 EVTSMDHDHTGQLLFCGD---AQGCIYSISMESHSGALSRSHRHRTTGKR-KCPVTTVQYRSFSLLAGGPVLLTCTQDGN 391 (498)
Q Consensus 316 ~i~~l~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~s~~~~~l~t~s~dg~ 391 (498)
.+....+ ++|.+++.+. .++.|++|++........... ...+ ...+..+.+ + ++.++++...|+.
T Consensus 273 ~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l----~~~~~~~~l~~~~~-----~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 273 AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEI----VPEDSSASLLSVSI-----V-GGHLSLEYLKDAT 341 (695)
T ss_dssp CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEE----ECCCSSCEEEEEEE-----E-TTEEEEEEEETTE
T ss_pred ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEE----ecCCCCCeEEEEEE-----E-CCEEEEEEEECCE
Confidence 6666666 5666444444 257899998865421100000 1111 334444444 2 6778889999999
Q ss_pred EEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeC----CCcEEEEECCCCCc
Q 010871 392 LSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE----DSNVYFYDLAKPKH 455 (498)
Q Consensus 392 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~----dg~I~iwd~~~~~~ 455 (498)
.++|.+..... .. ...............++ +++..++.... .++|++||+.+++.
T Consensus 342 ~~l~~~~~~g~--~~--~~l~~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 342 SEVRVATLKGK--PV--RTVQLPGVGAASNLMGL-----EDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTCC--EE--EECCCSSSSEECCCBSC-----TTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEeCCCC--ee--EEecCCCCeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 99887653211 11 11111111111112333 47776663332 46899999988653
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.51 E-value=7.8e-12 Score=131.22 Aligned_cols=246 Identities=12% Similarity=0.032 Sum_probs=151.4
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCC-----cEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCc-----
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDG-----TLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKT----- 254 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg-----~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~----- 254 (498)
+|...+..++||| +|++||.+..++ .|++||+.+ ++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~t-g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 122 DGTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDG-AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (710)
T ss_dssp TSCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTT-TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred CCCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCC-CCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccc
Confidence 4555789999999 999998876543 899999988 5554432222 23678999999999999988776
Q ss_pred -----------EEEEECCCCcE--EEEEec--CC-CeEEEEEEcCCCcEEEEEeC----CCcEEEEEcCC------Cc-E
Q 010871 255 -----------VRVWELTKGDC--IRVIYG--VS-SQLCIRFHPVNNNFLSVGNA----NKEITVFNFST------GR-I 307 (498)
Q Consensus 255 -----------v~iwd~~~~~~--~~~~~~--~~-~v~~i~~~~~~~~~l~~g~~----dg~i~iwd~~~------~~-~ 307 (498)
|.+|++.+++. ...+.. +. ....+.|+|++..++++... +..|++||+.+ +. .
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence 99999998762 222332 22 36789999977655555431 56899999986 52 2
Q ss_pred EEEe-ecCCCeEEEEEcCCCCEEEEEcCC----CeEEEEEccCCcccccccccccccCCCc-cceeeEEEeEeeEcCCCc
Q 010871 308 IKKL-VVDSEVTSMDHDHTGQLLFCGDAQ----GCIYSISMESHSGALSRSHRHRTTGKRK-CPVTTVQYRSFSLLAGGP 381 (498)
Q Consensus 308 ~~~~-~~~~~i~~l~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~s~~~~ 381 (498)
...+ .+...+.. .|+++|+.|+..+.. +.|++|++........... ..... ..+..+.+. +++.
T Consensus 279 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l----~~~~~~~~~~~~~~~-----~~~~ 348 (710)
T 2xdw_A 279 WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL----VPEHEKDVLEWVACV-----RSNF 348 (710)
T ss_dssp CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE----ECCCSSCEEEEEEEE-----TTTE
T ss_pred eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec----cCCCCCCeEEEEEEE-----cCCE
Confidence 3333 34444444 478888877765543 3699998865421100100 01111 245555443 7788
Q ss_pred EEEEEEcCCcEEE--EEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEE-eC---CCcEEEEECCCCC
Q 010871 382 VLLTCTQDGNLSF--FSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAG-SE---DSNVYFYDLAKPK 454 (498)
Q Consensus 382 ~l~t~s~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-s~---dg~I~iwd~~~~~ 454 (498)
++++...++..+| |++..+.. ... .... ........++ +++..++.. +. .+.|++||+.+++
T Consensus 349 lv~~~~~~g~~~l~~~~~~~g~~---~~~--l~~~-~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 349 LVLCYLHDVKNTLQLHDLATGAL---LKI--FPLE-VGSVVGYSGQ-----KKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEETTEEEEEEEETTTCCE---EEE--ECCC-SSEEEEEECC-----TTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEECCEEEEEEEECCCCCE---EEe--cCCC-CceEEEEecC-----CCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888989986555 55533211 111 1111 1111222333 477655533 32 4789999998765
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=5.7e-12 Score=115.42 Aligned_cols=237 Identities=10% Similarity=0.011 Sum_probs=153.7
Q ss_pred CeEEEEEccCCCEEE-EEeCCCcEEEEECCCCcEEEEEe-cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE
Q 010871 233 DVTDFDFSSNNQYIA-SSSMDKTVRVWELTKGDCIRVIY-GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK 310 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 310 (498)
...+++++++|++++ +.+.++.|.+||..++....... ....+..+++.+++ .++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999998776 44678899999976554322211 22456789998855 4555554 88999999876544322
Q ss_pred e-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC
Q 010871 311 L-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD 389 (498)
Q Consensus 311 ~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d 389 (498)
. .....+..++++++|+++++...++.|.+|+......... .......+..+.+. ++|+++++...+
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~p~~i~~~-----~~g~l~v~~~~~ 170 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-------PFTGLNDPDGVAVD-----NSGNVYVTDTDN 170 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-------CCCSCCSCCCEEEC-----TTCCEEEEEGGG
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-------ccccCCCceeEEEe-----CCCCEEEEECCC
Confidence 2 2336789999999999888877888999996433221110 01112234455544 889877777778
Q ss_pred CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeE
Q 010871 390 GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVV 469 (498)
Q Consensus 390 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~ 469 (498)
+.|.+||........ ...........+.+ .++|.++++...++.|.+|+..... .......+...+.
T Consensus 171 ~~i~~~~~~~~~~~~------~~~~~~~~p~~i~~-----d~~g~l~v~~~~~~~v~~~~~~~~~--~~~~~~~~~~~p~ 237 (270)
T 1rwi_B 171 NRVVKLEAESNNQVV------LPFTDITAPWGIAV-----DEAGTVYVTEHNTNQVVKLLAGSTT--STVLPFTGLNTPL 237 (270)
T ss_dssp TEEEEECTTTCCEEE------CCCSSCCSEEEEEE-----CTTCCEEEEETTTSCEEEECTTCSC--CEECCCCSCSCEE
T ss_pred CEEEEEecCCCceEe------ecccCCCCceEEEE-----CCCCCEEEEECCCCcEEEEcCCCCc--ceeeccCCCCCce
Confidence 899999986432110 00111111122233 3488877777778899999987633 1222223346789
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 470 AVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 470 ~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+++++++|+++++...++.|+++++..
T Consensus 238 ~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 238 AVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred eEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 999999999888888999999999864
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=7.3e-12 Score=115.03 Aligned_cols=182 Identities=14% Similarity=0.160 Sum_probs=138.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecC--CCe
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHS-KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGV--SSQ 275 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~v 275 (498)
.+++|++++.|+.|.+||.++ ++.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +++.+..+..+ ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT-KEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT-TEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCC-CeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 468999999999999999988 88888888776 5789999999999888 45778999998 89999999875 356
Q ss_pred EEEEEEcCCCcEEEEEeC-CCcEEEEEcCCCcEEEEeecC-------CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCc
Q 010871 276 LCIRFHPVNNNFLSVGNA-NKEITVFNFSTGRIIKKLVVD-------SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 276 ~~i~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~-------~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~ 347 (498)
.++.+.+++ +++++.+. ++.|..+|. +|+.+..+... .....+++.++|+++++...++.|..||.+ .
T Consensus 80 ~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G- 155 (276)
T 3no2_A 80 QTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G- 155 (276)
T ss_dssp EEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-
T ss_pred cccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-
Confidence 688888854 66766666 778888886 78888777422 234556789999999999999999999875 2
Q ss_pred ccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 348 GALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
........ . ....++.. .++++.+++++.++.|..+|..++
T Consensus 156 -~~~w~~~~-----~-~~~~~~~~-----~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 156 -QLLNSVKL-----S-GTPFSSAF-----LDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp -CEEEEEEC-----S-SCCCEEEE-----CTTSCEEEECBTTSEEEEECTTTC
T ss_pred -CEEEEEEC-----C-CCccceeE-----cCCCCEEEEeCCCCeEEEEeCcCC
Confidence 22222211 1 12233333 389999999988889999998754
No 196
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.50 E-value=1.2e-11 Score=119.42 Aligned_cols=282 Identities=10% Similarity=0.030 Sum_probs=175.4
Q ss_pred CCCEEEEEeC-C----CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEECCCC
Q 010871 199 SSDLLAYGAS-D----GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS----------MDKTVRVWELTKG 263 (498)
Q Consensus 199 ~~~~lasg~~-d----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s----------~dg~v~iwd~~~~ 263 (498)
+++.+++... + +.|.++|..+ .+.+..+..-..+ .+.++||+++|+.+. .++.|.++|..++
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t-~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGST-GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCC-CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 4554444443 2 6899999998 7888877755555 899999999888775 3678999999999
Q ss_pred cEEEEEecC--------CCeEEEEEEcCCCcEEEEEeC-CCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCC-CEEEEEc
Q 010871 264 DCIRVIYGV--------SSQLCIRFHPVNNNFLSVGNA-NKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTG-QLLFCGD 333 (498)
Q Consensus 264 ~~~~~~~~~--------~~v~~i~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~ 333 (498)
+.+..+... .....+.++|++..++++... ++.|.++|+.+++.+..+..... ....|++ ..+++.+
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~ 236 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNC 236 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEc
Confidence 999888643 234578999976544444333 68899999999999988865442 2233333 4556666
Q ss_pred CCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeecc
Q 010871 334 AQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKL 413 (498)
Q Consensus 334 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 413 (498)
.||.+.+.++.......... ..+.....++.. .+.+.+++..++..+..+.+.+.|+......... ......
T Consensus 237 ~dG~~~~V~~~~~~v~~~~~---~~~~v~~~p~~~----~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~-~~~~~~ 308 (426)
T 3c75_H 237 RDGSLARVDFADGETKVTNT---EVFHTEDELLIN----HPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRA-PIEALT 308 (426)
T ss_dssp TTSSEEEEECCTTCCEEEEC---CCCSCTTSCBCS----CCEECTTTCEEEEEBTTSEEEEEEECSSCEEECC-CEESSC
T ss_pred CCCCEEEEECCCCcEEEEee---eeeccCCCceee----EeeecCCCCEEEEEeCCCcEEEEeccCCceEEee-eeeecc
Confidence 77777777763221110000 000111111110 1223378888777788899999998643211100 000000
Q ss_pred CC--ceeeeEEEEeeeeeccCCCEEEEEeC----------CCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCC-EE
Q 010871 414 AP--RVHSIRASFCPLLSLEKGEYIVAGSE----------DSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGEN-LL 480 (498)
Q Consensus 414 ~~--~~~~~~~~~~~~~~~~~~~~l~~gs~----------dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l 480 (498)
.. ........+.++.++++++.+++... ++.|.++|+.+.+ .+..+... ....+|+|+||++ +|
T Consensus 309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--vv~~I~vg-~~P~gia~spDg~~~l 385 (426)
T 3c75_H 309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--RINKIELG-HEIDSINVSQDAEPLL 385 (426)
T ss_dssp TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEEE-EEECEEEECCSSSCEE
T ss_pred ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe--EEEEEECC-CCcCeEEEccCCCEEE
Confidence 00 00000001112333348777666542 3579999999854 56666532 2588999999999 88
Q ss_pred EEEe-CCCeEEEeecCCC
Q 010871 481 ASSD-LYGIVIVWKRAKT 497 (498)
Q Consensus 481 ~s~~-~Dg~i~iW~~~~~ 497 (498)
+++. .++.|.|+|+.+.
T Consensus 386 yv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 386 YALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEEETTTTEEEEEETTTC
T ss_pred EEEcCCCCeEEEEECCCC
Confidence 8888 5899999998865
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=5.2e-12 Score=133.12 Aligned_cols=275 Identities=9% Similarity=0.026 Sum_probs=161.4
Q ss_pred cCCCCEEEEEeCCCc---EEEEEcCC----CCceeEEe------ecCCCCeEEEEEccCCCEEEEEeCC-----CcEEEE
Q 010871 197 HMSSDLLAYGASDGT---LTVCTVSD----PPKVIKLL------NGHSKDVTDFDFSSNNQYIASSSMD-----KTVRVW 258 (498)
Q Consensus 197 p~~~~~lasg~~dg~---i~iwd~~~----~~~~~~~~------~~h~~~V~~l~~s~~~~~l~s~s~d-----g~v~iw 258 (498)
| +|++++....++. -.||-... .+.....+ .+|...+..++|+|||++|+.++.+ ..|++|
T Consensus 116 p-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 116 R-RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp E-ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred E-ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 6 7777776654432 45555432 12322222 2344478899999999999877544 359999
Q ss_pred ECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCC--------------cEEEEEcCCCcE--EEEee---cCCCeEE
Q 010871 259 ELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANK--------------EITVFNFSTGRI--IKKLV---VDSEVTS 319 (498)
Q Consensus 259 d~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg--------------~i~iwd~~~~~~--~~~~~---~~~~i~~ 319 (498)
|+.+++.+........+..++|+|+ ..+++ +..++ .|++|++.++.. ...+. +...+..
T Consensus 195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~-~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 195 GVADGKPLADELKWVKFSGLAWLGN-DALLY-SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp ETTTCCEEEEEEEEEESCCCEESTT-SEEEE-EECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred ECCCCCCCCccCCCceeccEEEECC-CEEEE-EEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 9999987654222122346889997 54444 44443 389999987752 22232 2235889
Q ss_pred EEEcCCCCEEEEEcCCC-----eEEEEEccCCccc-ccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC----
Q 010871 320 MDHDHTGQLLFCGDAQG-----CIYSISMESHSGA-LSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD---- 389 (498)
Q Consensus 320 l~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d---- 389 (498)
+.|+|+|++|+....++ .|++||+...... .... ..+...+... + +++|+.|+..+.+
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l------~~~~~~~~~~-~-----~~dg~~l~~~s~~~~~~ 340 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL------IPDLKAQWDF-V-----DGVGDQLWFVSGDGAPL 340 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE------ECSSSSCEEE-E-----EEETTEEEEEECTTCTT
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe------cCCCCceEEE-E-----eccCCEEEEEECCCCCC
Confidence 99999999888776543 8999998754212 1111 1112222222 1 1678888887764
Q ss_pred CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC-CCCCe
Q 010871 390 GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG-HRFPV 468 (498)
Q Consensus 390 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~-h~~~V 468 (498)
+.|.+||+.... . ........... .+. .+.. . ++.++++...|+..+||.+... ......+.. +.+.|
T Consensus 341 ~~l~~~d~~~~~-~--~~~~l~~~~~~--~l~-~~~~---~-~~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v 409 (741)
T 1yr2_A 341 KKIVRVDLSGST-P--RFDTVVPESKD--NLE-SVGI---A-GNRLFASYIHDAKSQVLAFDLD-GKPAGAVSLPGIGSA 409 (741)
T ss_dssp CEEEEEECSSSS-C--EEEEEECCCSS--EEE-EEEE---E-BTEEEEEEEETTEEEEEEEETT-SCEEEECBCSSSCEE
T ss_pred CEEEEEeCCCCc-c--ccEEEecCCCC--eEE-EEEE---E-CCEEEEEEEECCEEEEEEEeCC-CCceeeccCCCCeEE
Confidence 448899986532 1 11111111111 121 1111 1 5678888888988777655421 123444544 35678
Q ss_pred EEEEEcCCCCEEE-EE---eCCCeEEEeecCCC
Q 010871 469 VAVAWNHGENLLA-SS---DLYGIVIVWKRAKT 497 (498)
Q Consensus 469 ~~l~~sp~~~~l~-s~---~~Dg~i~iW~~~~~ 497 (498)
..+.++|++..|+ +. ...++|++||+.++
T Consensus 410 ~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 410 SGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 8999999987555 22 23488999998764
No 198
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.49 E-value=5.4e-12 Score=119.42 Aligned_cols=204 Identities=10% Similarity=0.076 Sum_probs=148.9
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEe---------ecCCCCeEEEEEcc-CCCEEEEEe-CCC
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLL---------NGHSKDVTDFDFSS-NNQYIASSS-MDK 253 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~---------~~h~~~V~~l~~s~-~~~~l~s~s-~dg 253 (498)
++-.....|+++| +++++++...++.|++|+.......+..+ .++......|+++| ++.++++.+ .++
T Consensus 88 ~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred CccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 3445789999999 88899998889999999987522255555 34556789999999 788888886 689
Q ss_pred cEEEEECCCCcEEEEEecC-----------CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee---cCCCeEE
Q 010871 254 TVRVWELTKGDCIRVIYGV-----------SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV---VDSEVTS 319 (498)
Q Consensus 254 ~v~iwd~~~~~~~~~~~~~-----------~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~i~~ 319 (498)
.|++|+ .+++.+..+... ..+..+++.|+++.++++...++.|++||..+++.+..+. +...+..
T Consensus 167 ~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~ 245 (329)
T 3fvz_A 167 RIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA 245 (329)
T ss_dssp EEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred eEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence 999999 567777766432 2377999999767888888889999999999899888873 4567889
Q ss_pred EEEcC------CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEE
Q 010871 320 MDHDH------TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLS 393 (498)
Q Consensus 320 l~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~ 393 (498)
++++| +++.+++...+..|++|+...... ..... ....+......+.+. ++|.++++...++.|+
T Consensus 246 ~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~--~~~~~~~~p~~ia~~-----~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 246 ISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFK--PVRKHFDMPHDIVAS-----EDGTVYIGDAHTNTVW 316 (329)
T ss_dssp EEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEEC--CSSSCCSSEEEEEEC-----TTSEEEEEESSSCCEE
T ss_pred eeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEc--CCCCccCCeeEEEEC-----CCCCEEEEECCCCEEE
Confidence 99999 333222333455899998764332 11110 012344445556554 9998888888999999
Q ss_pred EEEccc
Q 010871 394 FFSVAL 399 (498)
Q Consensus 394 iwd~~~ 399 (498)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999863
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=6.7e-12 Score=114.96 Aligned_cols=238 Identities=7% Similarity=0.010 Sum_probs=155.5
Q ss_pred cEEEEEEecCCCCEEE-EEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEE
Q 010871 189 AVTILKFGHMSSDLLA-YGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIR 267 (498)
Q Consensus 189 ~V~~v~~sp~~~~~la-sg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 267 (498)
...++++++ ++.+++ +...++.|.+|+..+ .........+...+.++++.++++++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGS-TGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCC-cccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 578899999 788777 547789999999765 222222223445788999999998666655 8899999987654432
Q ss_pred EE-ecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 268 VI-YGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 268 ~~-~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
.. .....+..+++.+++ .++++...++.|.+|+..+....... .....+.+++++++|+++++...++.|.+|+...
T Consensus 102 ~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 21 122567899999855 57776667889999987655443322 2234678899999999777777788999998764
Q ss_pred CcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEe
Q 010871 346 HSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFC 425 (498)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (498)
....... ......+..+.+. ++|.++++...++.|.+|+........ ...........+.+.
T Consensus 181 ~~~~~~~-------~~~~~~p~~i~~d-----~~g~l~v~~~~~~~v~~~~~~~~~~~~------~~~~~~~~p~~i~~~ 242 (270)
T 1rwi_B 181 NNQVVLP-------FTDITAPWGIAVD-----EAGTVYVTEHNTNQVVKLLAGSTTSTV------LPFTGLNTPLAVAVD 242 (270)
T ss_dssp CCEEECC-------CSSCCSEEEEEEC-----TTCCEEEEETTTSCEEEECTTCSCCEE------CCCCSCSCEEEEEEC
T ss_pred CceEeec-------ccCCCCceEEEEC-----CCCCEEEEECCCCcEEEEcCCCCccee------eccCCCCCceeEEEC
Confidence 3321110 1111334455544 888777777778899999986432111 111111112222344
Q ss_pred eeeeccCCCEEEEEeCCCcEEEEECCCC
Q 010871 426 PLLSLEKGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 426 ~~~~~~~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
++|+++++...++.|++|++...
T Consensus 243 -----~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 243 -----SDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp -----TTCCEEEEEGGGTEEEEECCCGG
T ss_pred -----CCCCEEEEECCCCEEEEEcCCCc
Confidence 48998888888999999998864
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.47 E-value=6.5e-11 Score=110.87 Aligned_cols=243 Identities=11% Similarity=0.075 Sum_probs=155.0
Q ss_pred cccEEEEEEecCCCCEEEE-------EeCCCcEEEEEcCCCCceeEEee----cCCCCeEEEEEccC-CCEEEEEeCCCc
Q 010871 187 KAAVTILKFGHMSSDLLAY-------GASDGTLTVCTVSDPPKVIKLLN----GHSKDVTDFDFSSN-NQYIASSSMDKT 254 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~las-------g~~dg~i~iwd~~~~~~~~~~~~----~h~~~V~~l~~s~~-~~~l~s~s~dg~ 254 (498)
-....+++|++ ++.++++ +..++.|.+||..+ ++...... ++...+.+++++++ ++++++. ..+.
T Consensus 17 ~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKT-GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLG 93 (314)
T ss_dssp CTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTT-CCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTE
T ss_pred CCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCC-CcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCC
Confidence 34568899998 8888887 57788999999876 44332221 25567999999999 6555544 4447
Q ss_pred EEEEECCCCcEEEE-EecC-----CCeEEEEEEcCCCcEEEEEeCC---------------CcEEEEEcCCCcEEEEeec
Q 010871 255 VRVWELTKGDCIRV-IYGV-----SSQLCIRFHPVNNNFLSVGNAN---------------KEITVFNFSTGRIIKKLVV 313 (498)
Q Consensus 255 v~iwd~~~~~~~~~-~~~~-----~~v~~i~~~~~~~~~l~~g~~d---------------g~i~iwd~~~~~~~~~~~~ 313 (498)
|.+||.. ++.... .... ..+..+++.+++ +++++...+ +.|..||.. ++.......
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~ 170 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA 170 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC
Confidence 9999988 765433 2211 236789999865 566655444 567777765 655444444
Q ss_pred CCCeEEEEEc----CCCCEEEEE-cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc
Q 010871 314 DSEVTSMDHD----HTGQLLFCG-DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ 388 (498)
Q Consensus 314 ~~~i~~l~~~----~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~ 388 (498)
......++++ ++++.++++ ..++.|++|+++.. +. +...
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~-g~----------------~~~~------------------- 214 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP-AK----------------IENK------------------- 214 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET-TE----------------EEEE-------------------
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC-Cc----------------cccc-------------------
Confidence 4567889999 998765544 56788999876410 00 0000
Q ss_pred CCcEEEE-EccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCC
Q 010871 389 DGNLSFF-SVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFP 467 (498)
Q Consensus 389 dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~ 467 (498)
.++ .+.. .. ......+.+. ++|+++++...++.|.+||..+++ .+..+..+...
T Consensus 215 ----~~~~~~~~-------------~~-~~~p~~i~~d-----~~G~l~v~~~~~~~i~~~d~~~g~--~~~~~~~~~~~ 269 (314)
T 1pjx_A 215 ----KVWGHIPG-------------TH-EGGADGMDFD-----EDNNLLVANWGSSHIEVFGPDGGQ--PKMRIRCPFEK 269 (314)
T ss_dssp ----EEEEECCC-------------CS-SCEEEEEEEB-----TTCCEEEEEETTTEEEEECTTCBS--CSEEEECSSSC
T ss_pred ----eEEEECCC-------------CC-CCCCCceEEC-----CCCCEEEEEcCCCEEEEEcCCCCc--EeEEEeCCCCC
Confidence 000 0000 00 0001112333 488888887788899999987643 34455566678
Q ss_pred eEEEEEcCCCCEE-EEEeCCCeEEEeecCC
Q 010871 468 VVAVAWNHGENLL-ASSDLYGIVIVWKRAK 496 (498)
Q Consensus 468 V~~l~~sp~~~~l-~s~~~Dg~i~iW~~~~ 496 (498)
+.+++|+++++.| ++...++.|..|+++.
T Consensus 270 ~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 270 PSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999999999944 5555678999999764
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.45 E-value=2.4e-10 Score=109.66 Aligned_cols=248 Identities=11% Similarity=0.033 Sum_probs=155.5
Q ss_pred EEEEecCCCCEEEEEe----------CCCcEEEEEcCCCCceeEEeecC-------CCCeEEEEEccCCCEEEEEeC--C
Q 010871 192 ILKFGHMSSDLLAYGA----------SDGTLTVCTVSDPPKVIKLLNGH-------SKDVTDFDFSSNNQYIASSSM--D 252 (498)
Q Consensus 192 ~v~~sp~~~~~lasg~----------~dg~i~iwd~~~~~~~~~~~~~h-------~~~V~~l~~s~~~~~l~s~s~--d 252 (498)
.++++| ++++|+++. .++.|.+||..+ .+.+..+.-. ...-..+.|+|||++|+.+.. +
T Consensus 70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t-~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCC-CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence 899999 888888875 367899999987 5555554321 123458999999999998874 4
Q ss_pred CcEEEEECCCCcEEEE-EecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee------cCCC-eEEEEEcC
Q 010871 253 KTVRVWELTKGDCIRV-IYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV------VDSE-VTSMDHDH 324 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------~~~~-i~~l~~~~ 324 (498)
+.|.++| .+++.+.. +.... ++.+.|.+...+++.+.||.+.++|. +++.+.... ...+ .....+.+
T Consensus 148 ~~v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred CeEEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence 7899999 99998877 65433 35566777777778889999999999 887764322 1111 12345566
Q ss_pred CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc----------CCcEEE
Q 010871 325 TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ----------DGNLSF 394 (498)
Q Consensus 325 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~----------dg~i~i 394 (498)
++..++..+..+.+.+.|+...........................+..+.++++++.++++.. .+.|.+
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 6665555557889999988644322211110000000000000001112445589888887654 357999
Q ss_pred EEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCC-EEEEEe-CCCcEEEEECCCCCccceee
Q 010871 395 FSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGE-YIVAGS-EDSNVYFYDLAKPKHSCVNK 460 (498)
Q Consensus 395 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs-~dg~I~iwd~~~~~~~~~~~ 460 (498)
+|+.+... ........ ......|+| ||+ +++++. .++.|.+||+.+.+ .+..
T Consensus 303 ID~~t~~v-----v~~i~~g~--~p~~i~~s~-----Dg~~~l~v~~~~~~~V~ViD~~t~~--vv~~ 356 (373)
T 2mad_H 303 VTGLVGQT-----SSQISLGH--DVDAISVAQ-----DGGPDLYALSAGTEVLHIYDAGAGD--QDQS 356 (373)
T ss_pred EECCCCEE-----EEEEECCC--CcCeEEECC-----CCCeEEEEEcCCCCeEEEEECCCCC--EEee
Confidence 99875421 11112222 223335665 999 777776 48999999999854 4544
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.45 E-value=2.4e-12 Score=122.56 Aligned_cols=179 Identities=12% Similarity=0.062 Sum_probs=129.7
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCC----------ceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPP----------KVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVW 258 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~----------~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw 258 (498)
.++.+++++ ...++++|+.++ +.||++.... +.. ....+.. |+.|+| ++.+|+++ .++.|++|
T Consensus 39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 689999999 888999999986 6669876411 111 2234666 999999 88899998 88999999
Q ss_pred ECCCCcEEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCe
Q 010871 259 ELTKGDCIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGC 337 (498)
Q Consensus 259 d~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~ 337 (498)
|+.+.........+ ..+..+.+.+. + +++++.||.|.+||+.++.... +...|++++|+|+| +++|..||.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred EchhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence 99877655555444 35666666653 3 7778899999999999887654 44689999999999 788999999
Q ss_pred EEEEEccCCcc--cccccccccc--cCCCccceeeEEEeEeeEcCCCcEEEEEE
Q 010871 338 IYSISMESHSG--ALSRSHRHRT--TGKRKCPVTTVQYRSFSLLAGGPVLLTCT 387 (498)
Q Consensus 338 i~i~d~~~~~~--~~~~~~~~~~--~~~~~~~i~~~~~~~~~~s~~~~~l~t~s 387 (498)
+++|+.+.... ......+... ..+|...|.++.|. +++.++++-+
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl-----~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTIL-----SPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEES-----SSSEEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEe-----cCCeEEEEEc
Confidence 99998765442 1111110000 01366778888886 7888887644
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.41 E-value=9e-10 Score=102.10 Aligned_cols=239 Identities=10% Similarity=0.046 Sum_probs=157.4
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEe--cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC
Q 010871 228 NGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIY--GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG 305 (498)
Q Consensus 228 ~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~ 305 (498)
..+...+.++++.++|+++++...++.|.+||.. ++...... ....+..+++.+++ .++++...++.|..||.. +
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-S
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCC-C
Confidence 3455789999999999877776668899999988 55433221 23467889998854 566666667889999986 4
Q ss_pred cEEEEee---cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcE
Q 010871 306 RIIKKLV---VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPV 382 (498)
Q Consensus 306 ~~~~~~~---~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~ 382 (498)
+. ..+. ....+.++++++++.++++...++.|..|+.. .. ..... .......+..+.+. +++.+
T Consensus 88 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~--~~~~~----~~~~~~~~~~i~~~-----~~g~l 154 (299)
T 2z2n_A 88 II-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GK--IREYE----LPNKGSYPSFITLG-----SDNAL 154 (299)
T ss_dssp CE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC--EEEEE----CSSTTCCEEEEEEC-----TTSCE
T ss_pred cE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CC--EEEec----CCCCCCCCceEEEc-----CCCCE
Confidence 43 2332 34578999999999988888788899999872 21 11100 01122334555444 88887
Q ss_pred EEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec
Q 010871 383 LLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ 462 (498)
Q Consensus 383 l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~ 462 (498)
+++...++.|..||. .+.. .. .... ..........+. ++|.++++...++.|.+||. ++... ...+.
T Consensus 155 ~v~~~~~~~i~~~~~-~g~~---~~-~~~~-~~~~~~~~i~~~-----~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~ 221 (299)
T 2z2n_A 155 WFTENQNNAIGRITE-SGDI---TE-FKIP-TPASGPVGITKG-----NDDALWFVEIIGNKIGRITT-SGEIT-EFKIP 221 (299)
T ss_dssp EEEETTTTEEEEECT-TCCE---EE-EECS-STTCCEEEEEEC-----TTSSEEEEETTTTEEEEECT-TCCEE-EEECS
T ss_pred EEEeCCCCEEEEEcC-CCcE---EE-eeCC-CCCCcceeEEEC-----CCCCEEEEccCCceEEEECC-CCcEE-EEECC
Confidence 777767789999988 3211 11 1011 111112222333 48887777767889999999 54422 12233
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 463 GHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 463 ~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.+...+.+++++++|.++++...++.|.+|+..
T Consensus 222 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 222 TPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred CCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 455679999999999977776677899999863
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.40 E-value=2.9e-10 Score=110.57 Aligned_cols=247 Identities=11% Similarity=0.048 Sum_probs=157.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCC--cEEEEEcCCCcEEE
Q 010871 232 KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANK--EITVFNFSTGRIIK 309 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~ 309 (498)
.....|+|+++++++++...++.|++||..++............. ++|.+++ ..|+++..++ .|.+++...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCceeE
Confidence 467899999999877777778999999999887766655544444 8999965 4566665654 79999987766544
Q ss_pred Ee----e-cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCcc--ceeeEEEeEeeEcCC-Cc
Q 010871 310 KL----V-VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKC--PVTTVQYRSFSLLAG-GP 381 (498)
Q Consensus 310 ~~----~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~s~~-~~ 381 (498)
.+ . ....+.+++++|++..|+++..++.|+.|+.............. ..... |...+.+. |+ +.
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~---~g~~~~~P~~~ia~~-----p~~g~ 280 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLEL---SGSLGTNPGPYLIYY-----FVDSN 280 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCC---CSCCCCSSCCEEEEE-----TTTTE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccc---cCCCCCCccccEEEe-----CCCCE
Confidence 44 2 44667899999965556667778999999987543222110000 11111 11245554 84 66
Q ss_pred EEEEEEcCCcEEEEEccccccceeeEeEeeccCCceee------eEEEEeeeeeccCCCEEEEEe-CCCcEEEEECCCCC
Q 010871 382 VLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHS------IRASFCPLLSLEKGEYIVAGS-EDSNVYFYDLAKPK 454 (498)
Q Consensus 382 ~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~gs-~dg~I~iwd~~~~~ 454 (498)
++++-...+.|+.|+..... ....-.......... +. .-..+++.++|+++++-. .++.|+.|++.++.
T Consensus 281 lyv~d~~~~~I~~~~~~g~~---~~~~g~~~~~g~~dg~~~~~~~~-~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGEC---EWFCGSATQKTVQDGLREEALFA-QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEEETTTTEEEEECTTCCE---EEEEECTTCCSCBCEEGGGCBCS-SEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEecCCCE---EEEEeCCCCCCcCCCcccccEeC-CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 66666678889999876321 111000000000000 00 011233345899888877 88999999977654
Q ss_pred ccceeeecCC---------------CCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 455 HSCVNKLQGH---------------RFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 455 ~~~~~~~~~h---------------~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+..+.++ -.....|++++++.++++-..++.|+.++++
T Consensus 357 ---v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 357 ---VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp ---EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred ---EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 3344333 2458999999998888888888999988764
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.40 E-value=7.4e-11 Score=111.87 Aligned_cols=258 Identities=10% Similarity=0.035 Sum_probs=159.1
Q ss_pred EEEecCCCCEEEEEe----------CCCcEEEEEcCCCCceeEEeecC-------CCCeEEEEEccCCCEEEEEeC--CC
Q 010871 193 LKFGHMSSDLLAYGA----------SDGTLTVCTVSDPPKVIKLLNGH-------SKDVTDFDFSSNNQYIASSSM--DK 253 (498)
Q Consensus 193 v~~sp~~~~~lasg~----------~dg~i~iwd~~~~~~~~~~~~~h-------~~~V~~l~~s~~~~~l~s~s~--dg 253 (498)
++++| ++++|+++. .++.|.+||..+ .+.+..+.-. ...-..+.|+|||++|+.+.. ++
T Consensus 83 va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t-~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 83 PVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred EEECC-CCCEEEEEcccccccccCCCCCEEEEEECCC-CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 99999 787776654 367899999998 6777666421 124567999999999988864 68
Q ss_pred cEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC-CcEEEEee-c----CCCeE-EEEEc-CC
Q 010871 254 TVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST-GRIIKKLV-V----DSEVT-SMDHD-HT 325 (498)
Q Consensus 254 ~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~-~----~~~i~-~l~~~-~~ 325 (498)
.|.++|+.+++.+.++..... ....|.+...+++.+.||.+.+.++.+ ++...... . ...+. ...|. ++
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~d 237 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA 237 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred eEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCC
Confidence 999999999999999875442 233465667777888999999999976 56533221 1 11121 23553 56
Q ss_pred CCEEEEEcCCCeEEEEEccCCcccccccccccc-----cCCCccceeeEEEeEeeEcCCCcEEEEEEc----------CC
Q 010871 326 GQLLFCGDAQGCIYSISMESHSGALSRSHRHRT-----TGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ----------DG 390 (498)
Q Consensus 326 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~----------dg 390 (498)
|++++ .+.+|.|+++|+............... ..-...... .+.++++++.+++... ..
T Consensus 238 G~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q-----~~a~~~~~~~lyV~~~~~~~~~hk~~~~ 311 (386)
T 3sjl_D 238 GRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ-----QVAYHRALDRIYLLVDQRDEWRHKTASR 311 (386)
T ss_dssp TEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS-----CEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred CcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcc-----eeeECCCCCeEEEEeccccccccCCCCC
Confidence 65555 555899999998655433322111000 000011111 2333488888888653 24
Q ss_pred cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCC-EEEEE-eCCCcEEEEECCCCCccceeeecCCCCCe
Q 010871 391 NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGE-YIVAG-SEDSNVYFYDLAKPKHSCVNKLQGHRFPV 468 (498)
Q Consensus 391 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g-s~dg~I~iwd~~~~~~~~~~~~~~h~~~V 468 (498)
.|.++|+.+.... ....... ....+.++ +|++ +|++. ..++.|.++|..+++ .+.++..- +..
T Consensus 312 ~V~viD~~t~kv~-----~~i~vg~--~~~~lavs-----~D~~~~ly~tn~~~~~VsViD~~t~k--~~~~i~~~-~~p 376 (386)
T 3sjl_D 312 FVVVLDAKTGERL-----AKFEMGH--EIDSINVS-----QDEKPLLYALSTGDKTLYIHDAESGE--ELRSVNQL-GHG 376 (386)
T ss_dssp EEEEEETTTCCEE-----EEEEEEE--EECEEEEC-----SSSSCEEEEEETTTTEEEEEETTTCC--EEEEECCC-CSS
T ss_pred EEEEEECCCCeEE-----EEEECCC--CcceEEEC-----CCCCeEEEEEcCCCCeEEEEECCCCc--EEEEecCC-CCC
Confidence 6888898765221 1111111 12223444 4886 66665 458999999999865 45555432 233
Q ss_pred EEEEEcCC
Q 010871 469 VAVAWNHG 476 (498)
Q Consensus 469 ~~l~~sp~ 476 (498)
+.|.+++|
T Consensus 377 ~~l~~s~d 384 (386)
T 3sjl_D 377 PQVITTAD 384 (386)
T ss_dssp CCEEEECC
T ss_pred ceeEECCc
Confidence 44555554
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.37 E-value=2.8e-09 Score=98.98 Aligned_cols=232 Identities=8% Similarity=0.058 Sum_probs=145.9
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
..---+..|+++++.++++...++.|..||..+ ... ..+. ....+.+++++++|+++++ . ++.|.+||..+++..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~-~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFT-KQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTT-CCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCC-CcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence 344568899996666777777889999999986 333 2332 4578999999999995554 4 567999999888754
Q ss_pred EEEecC-----CCeEEEEEEcCCCcEEEEEeC---------CCcEEEEEcCC-CcEEEEeecCCCeEEEEEcCCCCEEE-
Q 010871 267 RVIYGV-----SSQLCIRFHPVNNNFLSVGNA---------NKEITVFNFST-GRIIKKLVVDSEVTSMDHDHTGQLLF- 330 (498)
Q Consensus 267 ~~~~~~-----~~v~~i~~~~~~~~~l~~g~~---------dg~i~iwd~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~- 330 (498)
...... ..+..+++.|++ +++++... ...-.+|.+.. ++.............++|+|+++.|+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence 433321 236688999965 45554322 12344555442 44443344445678999999998664
Q ss_pred EEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEe
Q 010871 331 CGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCS 410 (498)
Q Consensus 331 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~ 410 (498)
+.+.++.|.+|+++...+.... .+. +.++..
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~---------------------------~~~-----------~~~~~~----------- 196 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISN---------------------------RRS-----------VYKLEK----------- 196 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEE---------------------------EEE-----------EEECCG-----------
T ss_pred ecCCCCcEEEEeccCCCCcccC---------------------------cEE-----------EEECCC-----------
Confidence 5566788999987422211100 000 001100
Q ss_pred eccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEc-CCCCEEEEEe
Q 010871 411 LKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWN-HGENLLASSD 484 (498)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~l~s~~ 484 (498)
...... .+.+. ++|++.++....+.|.+||..+++ .+..+..+...+++++|. |+++.|+.++
T Consensus 197 --~~~~p~--g~~~d-----~~G~lwva~~~~~~v~~~d~~tG~--~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 197 --EEQIPD--GMCID-----AEGKLWVACYNGGRVIRLDPVTGK--RLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp --GGCEEE--EEEEB-----TTSCEEEEEETTTEEEEECTTTCC--EEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred --CCCCCC--eeEEC-----CCCCEEEEEcCCCEEEEEcCCCce--EEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 000001 11233 488888887778889999998754 466666666789999998 8877665444
No 207
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.36 E-value=2.7e-11 Score=115.28 Aligned_cols=263 Identities=11% Similarity=-0.003 Sum_probs=162.7
Q ss_pred ccEEEEEEecCCCCEEEEEe--CCCcEEEEEcCCCCceeEEe-------ecCCCCeEEEEEccCCCEEEEEeC-----CC
Q 010871 188 AAVTILKFGHMSSDLLAYGA--SDGTLTVCTVSDPPKVIKLL-------NGHSKDVTDFDFSSNNQYIASSSM-----DK 253 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~--~dg~i~iwd~~~~~~~~~~~-------~~h~~~V~~l~~s~~~~~l~s~s~-----dg 253 (498)
..+..|++++ +++++++.. .++.++||.+.+ ++. ..+ .+|...+.+++++++++++++-.. ++
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~-g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQ-DGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEET-TEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEECC-CCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 6789999999 889888864 234356666553 432 222 235578999999999876665433 57
Q ss_pred cEEEEECCCCcEEEEEecC-------CCeEEEEEEcCCCcEEEEEe---CCCcEEEEEcCCCcEEEEeec-CCC-eEEEE
Q 010871 254 TVRVWELTKGDCIRVIYGV-------SSQLCIRFHPVNNNFLSVGN---ANKEITVFNFSTGRIIKKLVV-DSE-VTSMD 321 (498)
Q Consensus 254 ~v~iwd~~~~~~~~~~~~~-------~~v~~i~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~-~~~-i~~l~ 321 (498)
.|.+||+.+++.+..+... ..+..+++.++++.++++.. .++.|.+||+.+++....+.. ... .....
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 8999999999988777643 23468899986666666665 678999999998887666532 111 00123
Q ss_pred EcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC-cEEEEEcccc
Q 010871 322 HDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG-NLSFFSVALE 400 (498)
Q Consensus 322 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg-~i~iwd~~~~ 400 (498)
+..+|..+.+.+.+|.+..|.. .+..+. ++++++.|+.+..++ .|..++....
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~---------------------~~~gia-----~s~dg~~ly~~~~~~~~l~~~~~~~~ 227 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHL---------------------GVNGIV-----LDAENEWLYLSPMHSTSMYRIKSADL 227 (343)
T ss_dssp CEETTEECBEECTTSCEECCCC---------------------CEEEEE-----ECTTSCEEEEEESSCSEEEEEEHHHH
T ss_pred eeECCEEEEeccCCCceeceec---------------------ccceeE-----eccCCCEEEEEeCCCCeEEEEEHHHh
Confidence 3445666666666666644421 133444 449999898888776 4444443211
Q ss_pred cccee-------eEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEE
Q 010871 401 IQGYL-------TFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAW 473 (498)
Q Consensus 401 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~ 473 (498)
..... .+.... ..... ..+++.++|.++++...++.|.+||..+++...+... .+...+.+++|
T Consensus 228 ~~~~~~~~~~~~~~~~~g-~~g~p-------dgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~ 298 (343)
T 2qe8_A 228 SNLQLTDAELGSKIERYS-EKPIC-------DGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNF 298 (343)
T ss_dssp TCTTCCHHHHHTTCEEEE-ECCSC-------SCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEE
T ss_pred cCCCCChhhhhcceEecc-cCCCC-------ceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEE
Confidence 10000 000000 00111 1133334899999998899999999855442222211 13456899999
Q ss_pred cCCCCEEEEEeCCCe
Q 010871 474 NHGENLLASSDLYGI 488 (498)
Q Consensus 474 sp~~~~l~s~~~Dg~ 488 (498)
.+++.++++.+..+.
T Consensus 299 ~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 299 GSDGYLYFDCNQLHH 313 (343)
T ss_dssp CTTSCEEEEECCGGG
T ss_pred CCCCcEEEEeCcccc
Confidence 999998888764433
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.33 E-value=1.9e-10 Score=111.06 Aligned_cols=251 Identities=10% Similarity=0.053 Sum_probs=159.1
Q ss_pred EEEEecCCCCEEEEEe----------CCCcEEEEEcCCCCceeEEeecC-------CCCeEEEEEccCCCEEEEEeC--C
Q 010871 192 ILKFGHMSSDLLAYGA----------SDGTLTVCTVSDPPKVIKLLNGH-------SKDVTDFDFSSNNQYIASSSM--D 252 (498)
Q Consensus 192 ~v~~sp~~~~~lasg~----------~dg~i~iwd~~~~~~~~~~~~~h-------~~~V~~l~~s~~~~~l~s~s~--d 252 (498)
.++++| ++++|+++. .++.|.++|..+ .+.+..+.-. ......+.|+|||++|+.+.. +
T Consensus 122 gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t-~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVT-FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTT-CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCC-CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence 799999 777666664 467899999998 6666665421 233567899999999998874 5
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE----eec-CCC-eEEEEEcCCC
Q 010871 253 KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK----LVV-DSE-VTSMDHDHTG 326 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~----~~~-~~~-i~~l~~~~~~ 326 (498)
+.|.+.|+.+++.+.++..... ....|.+...+++.+.||.+.+.+..+++.... +.. ..+ ...+.+.+++
T Consensus 200 ~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg 276 (426)
T 3c75_H 200 PAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS 276 (426)
T ss_dssp CEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred CeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence 7899999999999988876442 344555567777778899999999866665532 111 111 1235678888
Q ss_pred CEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc----------CCcEEEEE
Q 010871 327 QLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ----------DGNLSFFS 396 (498)
Q Consensus 327 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~----------dg~i~iwd 396 (498)
..++.....+.|++.|+..............................+.++++++.+++... ++.|.++|
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 88777778899999998654322211111000000000000000011334488887777653 34799999
Q ss_pred ccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCC-EEEEEe-CCCcEEEEECCCCCccceeee
Q 010871 397 VALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGE-YIVAGS-EDSNVYFYDLAKPKHSCVNKL 461 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs-~dg~I~iwd~~~~~~~~~~~~ 461 (498)
+.+.... ....... ....+.|+| ||+ ++++.. .++.|.++|+.+.+ .+..+
T Consensus 357 ~~T~kvv-----~~I~vg~--~P~gia~sp-----Dg~~~lyv~n~~s~~VsVID~~t~k--vv~tI 409 (426)
T 3c75_H 357 AETGERI-----NKIELGH--EIDSINVSQ-----DAEPLLYALSAGTQTLHIYDAATGE--ELRSV 409 (426)
T ss_dssp TTTCCEE-----EEEEEEE--EECEEEECC-----SSSCEEEEEETTTTEEEEEETTTCC--EEEEE
T ss_pred CCCCeEE-----EEEECCC--CcCeEEEcc-----CCCEEEEEEcCCCCeEEEEECCCCC--EEEEe
Confidence 8864221 1111111 233335555 998 888887 58999999999954 56665
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.33 E-value=1.7e-10 Score=121.59 Aligned_cols=245 Identities=14% Similarity=0.105 Sum_probs=146.2
Q ss_pred cccccEEEEEEecCCCCEEEEEeCC-----CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCc-----
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASD-----GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKT----- 254 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~d-----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~----- 254 (498)
+|...+..++||| +|++||.++.+ ..|++||+.+ ++.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~t-g~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 160 DGATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVAD-GKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp ---EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTT-CCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCC-CCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence 3445788999999 89988887654 4599999998 544332 112222457899999 99988887654
Q ss_pred ---------EEEEECCCCcE--EEEEecCC---CeEEEEEEcCCCcEEEEEeC----CCcEEEEEcCCC--c-EEEEeec
Q 010871 255 ---------VRVWELTKGDC--IRVIYGVS---SQLCIRFHPVNNNFLSVGNA----NKEITVFNFSTG--R-IIKKLVV 313 (498)
Q Consensus 255 ---------v~iwd~~~~~~--~~~~~~~~---~v~~i~~~~~~~~~l~~g~~----dg~i~iwd~~~~--~-~~~~~~~ 313 (498)
|.+|++.++.. ...+.... .+..+.|+|++..+++++.. ...|++||+.++ + ......+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence 88999987752 23333322 37789999977555555432 348999999877 4 3333334
Q ss_pred CCCeEEEEEcCCCCEEEEEcC----CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC
Q 010871 314 DSEVTSMDHDHTGQLLFCGDA----QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD 389 (498)
Q Consensus 314 ~~~i~~l~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d 389 (498)
...+.... +++|+.|+..+. ++.|++|++.......... ...+...+..+.+ + ++.++++...|
T Consensus 316 ~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l-----~~~~~~~l~~~~~-----~-~~~lv~~~~~d 383 (741)
T 1yr2_A 316 LKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV-----VPESKDNLESVGI-----A-GNRLFASYIHD 383 (741)
T ss_dssp SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE-----ECCCSSEEEEEEE-----E-BTEEEEEEEET
T ss_pred CCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE-----ecCCCCeEEEEEE-----E-CCEEEEEEEEC
Confidence 44444443 488888877765 3459999876532111111 1223333444433 2 56788888899
Q ss_pred CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEE-e---CCCcEEEEECCCCC
Q 010871 390 GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAG-S---EDSNVYFYDLAKPK 454 (498)
Q Consensus 390 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-s---~dg~I~iwd~~~~~ 454 (498)
+..++|.+..... .. ...............+++ ++..|+.. + ..++|++||+.+++
T Consensus 384 g~~~l~~~~~~g~--~~--~~l~~~~~~~v~~~~~s~-----d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 384 AKSQVLAFDLDGK--PA--GAVSLPGIGSASGLSGRP-----GDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TEEEEEEEETTSC--EE--EECBCSSSCEEEEEECCB-----TCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CEEEEEEEeCCCC--ce--eeccCCCCeEEEEeecCC-----CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9888887652111 11 111111111222234444 77655533 2 24789999998765
No 210
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.32 E-value=1.6e-10 Score=109.76 Aligned_cols=260 Identities=8% Similarity=-0.079 Sum_probs=160.1
Q ss_pred cEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEECCCCcEEEEEecC--------
Q 010871 211 TLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS----------MDKTVRVWELTKGDCIRVIYGV-------- 272 (498)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~-------- 272 (498)
.|.+.|..+ .+.+..+.....+ .+.++||+++|+.+. .++.|.+||+.+++.+.++...
T Consensus 47 ~vsvID~~t-~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGC-GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTT-TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCC-CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 788999998 7888887655555 799999999888876 3688999999999999998754
Q ss_pred CCeEEEEEEcCCCcEEEEEeC-CCcEEE--EEcCCCcEEEEeecCCCeEEEEEcCCC-CEEEEEcCCCeEEEEEccC---
Q 010871 273 SSQLCIRFHPVNNNFLSVGNA-NKEITV--FNFSTGRIIKKLVVDSEVTSMDHDHTG-QLLFCGDAQGCIYSISMES--- 345 (498)
Q Consensus 273 ~~v~~i~~~~~~~~~l~~g~~-dg~i~i--wd~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~--- 345 (498)
.....+.++|++..++++... +..|.+ +|+.+ +..+..... ..+.|++ ..+++.+.||.+.+.++..
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 245689999977555554433 467888 89877 445543222 1223444 3555667788888887764
Q ss_pred -CcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCC----ceeee
Q 010871 346 -HSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAP----RVHSI 420 (498)
Q Consensus 346 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~ 420 (498)
.. ....... ........+. . .+++..++..+. +.+.+.|+...... ......... .....
T Consensus 198 ~~~-~v~~~~t-~~i~vg~~P~---~------~~~~~~~~~vs~-~~V~viD~~~~~~~---v~~~~~~~~~~~~~~~~~ 262 (368)
T 1mda_H 198 AAG-IVGAQCT-GAQNCSSQAA---Q------ANYPGMLVWAVA-SSILQGDIPAAGAT---MKAAIDGNESGRKADNFR 262 (368)
T ss_dssp CCE-ECCCCSC-TTSCBCSCCE---E------ETTTTEEEECBS-SCCEEEECCSSCCE---EECCCCSSCTHHHHTTEE
T ss_pred cCC-eEEEEee-eeeeCCCCcc---c------cccCCEEEEEcC-CEEEEEECCCCcce---EEEEEEeccccccccccc
Confidence 11 1110000 0011112222 1 166666666666 89999998642111 111111100 00000
Q ss_pred EEEEeeeeeccCCCEEEEEeC---------CCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCC-EEEEEe-CCCeE
Q 010871 421 RASFCPLLSLEKGEYIVAGSE---------DSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGEN-LLASSD-LYGIV 489 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~gs~---------dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~-~Dg~i 489 (498)
...+.++.+.++++.++.+.. ++.+.++|+.+.+ .+..+.... ...+|+|+|||+ ++++.. .++.|
T Consensus 263 p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~--vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--TSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--EEECCEEEE-EECEEEECCSSSCEEEEEETTTTEE
T ss_pred cCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe--EEEEEECCC-CcceEEECCCCCEEEEEccCCCCeE
Confidence 001111233348888776543 2356799999854 566665433 588999999997 566666 59999
Q ss_pred EEeecCCC
Q 010871 490 IVWKRAKT 497 (498)
Q Consensus 490 ~iW~~~~~ 497 (498)
.++|+.+.
T Consensus 340 sVID~~t~ 347 (368)
T 1mda_H 340 DIYDAASD 347 (368)
T ss_dssp EEEESSSC
T ss_pred EEEECCCC
Confidence 99998864
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.29 E-value=1.9e-08 Score=94.79 Aligned_cols=148 Identities=11% Similarity=0.008 Sum_probs=100.7
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
-..+.+|+|+++.+++++..++.|.+||..+ +.. ..+. ....+.++.|+++|+++++. .++ |.+||..+++....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~-~~~-~~~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLAS-GRK-TVHA-LPFMGSALAKISDSKQLIAS-DDG-LFLRDTATGVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTT-TEE-EEEE-CSSCEEEEEEEETTEEEEEE-TTE-EEEEETTTCCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCC-CcE-EEEE-CCCcceEEEEeCCCeEEEEE-CCC-EEEEECCCCcEEEE
Confidence 3567899995566777777889999999986 333 2333 35679999999999877654 444 99999988875443
Q ss_pred EecC-----CCeEEEEEEcCCCcEEEEEeC------CCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEE-cCCC
Q 010871 269 IYGV-----SSQLCIRFHPVNNNFLSVGNA------NKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCG-DAQG 336 (498)
Q Consensus 269 ~~~~-----~~v~~i~~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg 336 (498)
.... ..+..+++.|++ +++++... .+.|..++ +++.............++|+++++.++++ +.++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 3221 246789999966 45544332 24566666 55544333334567899999999866544 5678
Q ss_pred eEEEEEcc
Q 010871 337 CIYSISME 344 (498)
Q Consensus 337 ~i~i~d~~ 344 (498)
.|++|+++
T Consensus 202 ~I~~~d~~ 209 (326)
T 2ghs_A 202 RLMRVPLD 209 (326)
T ss_dssp EEEEEEBC
T ss_pred EEEEEEcc
Confidence 89999875
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=1.4e-09 Score=105.77 Aligned_cols=245 Identities=14% Similarity=0.093 Sum_probs=151.3
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCC--cEEEEECCCCcE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDK--TVRVWELTKGDC 265 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg--~v~iwd~~~~~~ 265 (498)
.....|+|++ ++.++++...++.|++||..+ +......... .... ++|+++++.|+++..++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~-g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDD-NKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECS-TTEEEEEETTTTEEEEEETTT-TEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeC-CCCEEEEecCCCcEEEEECCC-CEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 3578999998 888888888889999999986 4554444432 3334 99999999999988866 788888877655
Q ss_pred EEEE----e-cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEE----ee-cCCC--eEEEEEcCC-CCEEEEE
Q 010871 266 IRVI----Y-GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKK----LV-VDSE--VTSMDHDHT-GQLLFCG 332 (498)
Q Consensus 266 ~~~~----~-~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~----~~-~~~~--i~~l~~~~~-~~~l~~~ 332 (498)
...+ . ....+.+++++|+++.+++ +..++.|+.||..++..... .. .... ...++|+|+ +.++++-
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 4444 2 2245678999996655555 66788999999987764332 11 1111 129999995 5566666
Q ss_pred cCCCeEEEEEccCCccccccccccccc------CCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEcccccccee
Q 010871 333 DAQGCIYSISMESHSGALSRSHRHRTT------GKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYL 405 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~ 405 (498)
..++.|+.|+.+............... ...-..... ++++++|+++++-+ .++.|+.|++..+..
T Consensus 286 ~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~g-----ia~d~dG~lyvad~~~~~~I~~~~~~~G~v--- 357 (409)
T 3hrp_A 286 QNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNG-----MTVDEDGNFYIVDGFKGYCLRKLDILDGYV--- 357 (409)
T ss_dssp TTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEE-----EEECTTCCEEEEETTTTCEEEEEETTTTEE---
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeE-----EEEeCCCCEEEEeCCCCCEEEEEECCCCEE---
Confidence 778899999876431111000000000 000112333 44459999777777 789999999654321
Q ss_pred eEeEee-ccCC----------ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEEC
Q 010871 406 TFRCSL-KLAP----------RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDL 450 (498)
Q Consensus 406 ~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~ 450 (498)
...... .... -.....+++. ++|.++++-..++.|+.+++
T Consensus 358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd-----~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 STVAGQVDVASQIDGTPLEATFNYPYDICYD-----GEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEECTTCBSCCCBSTTTCCBSSEEEEEEC-----SSSEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCCCcCCCChhceEeCCceEEEEc-----CCCCEEEEECCCCeEEEEEe
Confidence 111100 0000 0111222333 47777777777788877765
No 213
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.27 E-value=4.3e-09 Score=101.28 Aligned_cols=269 Identities=11% Similarity=0.050 Sum_probs=162.4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecC---------CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGH---------SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIY 270 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h---------~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 270 (498)
+..|++++.++.|..+|..+ ++.+..+... ...+.+.-. .++..|+.++.++.|..+|..+|+.+....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADD-GKEIWSVSLAEKDGWFSKEPALLSGGVT-VSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEEEECCC---CCSCCCCCEEEEEE-EETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccC-CceeeeecCccccccccccCcccccCce-EeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 46777788889999999987 5665554432 222322222 235578888899999999999999988887
Q ss_pred cCCCeEE-EEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeE------EEEEcCCCCEEEEEcCCCeEEEEEc
Q 010871 271 GVSSQLC-IRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVT------SMDHDHTGQLLFCGDAQGCIYSISM 343 (498)
Q Consensus 271 ~~~~v~~-i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~------~l~~~~~~~~l~~~~~dg~i~i~d~ 343 (498)
....+.. .... +..+++++.++.|..+|..+|+.+........+. ..... +..+++++.+|.|..+|.
T Consensus 131 ~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 131 VAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp CSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred CCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence 6543321 1222 2467778889999999999999998886543332 12222 456888888999999988
Q ss_pred cCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEE
Q 010871 344 ESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRAS 423 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (498)
......................+..+...++ ..+..++.++.++.+..+|..++.. . ....... ..
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~v~~~~~~g~l~~~d~~tG~~---~--w~~~~~~-~~----- 271 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPV---VVNGVVFALAYNGNLTALDLRSGQI---M--WKRELGS-VN----- 271 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCE---EETTEEEEECTTSCEEEEETTTCCE---E--EEECCCC-EE-----
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcE---EECCEEEEEecCcEEEEEECCCCcE---E--eeccCCC-CC-----
Confidence 6543322211100000000000000000100 1256788888899999999876532 1 1111111 11
Q ss_pred EeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC-CCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 424 FCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG-HRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 424 ~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
.+. .++..|++++.++.|+.+|..+++ .+..... ....+...... +..|+.++.+|.|.++|.+++
T Consensus 272 -~~~---~~~~~l~~~~~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 272 -DFI---VDGNRIYLVDQNDRVMALTIDGGV--TLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp -EEE---EETTEEEEEETTCCEEEEETTTCC--EEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTC
T ss_pred -Cce---EECCEEEEEcCCCeEEEEECCCCc--EEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCC
Confidence 111 146778888889999999999865 3333331 12222233332 567888999999999998765
No 214
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.26 E-value=1.4e-09 Score=101.02 Aligned_cols=199 Identities=10% Similarity=0.024 Sum_probs=127.2
Q ss_pred CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccc
Q 010871 273 SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALS 351 (498)
Q Consensus 273 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 351 (498)
....+++|.|++..+++++..++.|..||..++ ...+ .....+.+++++++|+++++...++.|.+||.........
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI 105 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence 456789999977668888989999999999887 4444 4566799999999999888887788999998754332111
Q ss_pred ccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-----------------CCcEEEEEccccccceeeEeEeeccC
Q 010871 352 RSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-----------------DGNLSFFSVALEIQGYLTFRCSLKLA 414 (498)
Q Consensus 352 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 414 (498)
.... .......+..+.+ +++|+++++.+. .+.|..++.. + ... ......
T Consensus 106 ~~~~---~~~~~~~~~~i~~-----d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g---~~~--~~~~~~ 171 (296)
T 3e5z_A 106 ADSF---EGKKLNSPNDVCL-----APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G---TLS--APIRDR 171 (296)
T ss_dssp ECEE---TTEECCCCCCEEE-----CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S---CEE--EEECCC
T ss_pred eecc---CCCCCCCCCCEEE-----CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C---CEE--EeecCC
Confidence 1000 0011112333444 499998887321 2344444433 1 111 111111
Q ss_pred CceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECC-CCCc-cceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEe
Q 010871 415 PRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLA-KPKH-SCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVW 492 (498)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~-~~~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW 492 (498)
. ......|+ ++|+.+++.+.++.|++|++. ++.. .....+..+...+.+++++++|+++++. ++.|.+|
T Consensus 172 ~--~~~gi~~s-----~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 V--KPNGLAFL-----PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp S--SEEEEEEC-----TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred C--CCccEEEC-----CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 1 11223444 499988777788999999997 3332 1122333455667899999999977766 7899999
Q ss_pred ecCC
Q 010871 493 KRAK 496 (498)
Q Consensus 493 ~~~~ 496 (498)
+.+.
T Consensus 243 ~~~g 246 (296)
T 3e5z_A 243 TPDG 246 (296)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 9763
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=6.3e-09 Score=97.00 Aligned_cols=236 Identities=9% Similarity=0.049 Sum_probs=142.6
Q ss_pred eeEEeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEE
Q 010871 223 VIKLLNGHSKDVTDFDFSSNNQ-YIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFN 301 (498)
Q Consensus 223 ~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd 301 (498)
.+..+..+........|+++++ ++++...++.|..|+. +++..........+..+++.+++ +++++...++.|.+|+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEEC
Confidence 3444555556678899999998 6677777899999998 45533222334567889999865 5666555567899999
Q ss_pred cCCCcEEEEee-----cCCCeEEEEEcCCCCEEEE----EcC-------------CCeEEEEEccCCccccccccccccc
Q 010871 302 FSTGRIIKKLV-----VDSEVTSMDHDHTGQLLFC----GDA-------------QGCIYSISMESHSGALSRSHRHRTT 359 (498)
Q Consensus 302 ~~~~~~~~~~~-----~~~~i~~l~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~ 359 (498)
.. ++...... ....+..++++++|+++++ |.. .+.|+.++..... ....
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--~~~~------ 184 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--LQRM------ 184 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC--CEEE------
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc--EEEE------
Confidence 86 55433221 1234678999999998876 332 2456666553222 1110
Q ss_pred CCCccceeeEEEeEeeEcCCCcEEEEEEcC------CcEEEEEccccccceeeEeEeecc-CCceeeeEEEEeeeeeccC
Q 010871 360 GKRKCPVTTVQYRSFSLLAGGPVLLTCTQD------GNLSFFSVALEIQGYLTFRCSLKL-APRVHSIRASFCPLLSLEK 432 (498)
Q Consensus 360 ~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d------g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 432 (498)
. ....... ++++++++.|+.+... +.|.+|++.... .......... .... ..+...++
T Consensus 185 ~-~~~~p~g-----l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~p-------dgi~~d~~ 249 (305)
T 3dr2_A 185 A-DLDHPNG-----LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLP-------DGFCVDRG 249 (305)
T ss_dssp E-EESSEEE-----EEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCC-------CSEEECTT
T ss_pred e-cCCCCcc-----eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCC-------CeEEECCC
Confidence 0 1112233 4455999988887765 689999987432 1011111111 1111 11233348
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 010871 433 GEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVI 490 (498)
Q Consensus 433 ~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~ 490 (498)
|++.++ ..+ .|.+|+... ..+..+..+. .+.+++|.++++.|+.++.++..+
T Consensus 250 G~lwv~-~~~-gv~~~~~~g---~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 250 GWLWSS-SGT-GVCVFDSDG---QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp SCEEEC-CSS-EEEEECTTS---CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCEEEe-cCC-cEEEECCCC---CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 885444 444 499999853 2355555444 588999999998888877664433
No 216
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.25 E-value=3.8e-08 Score=91.07 Aligned_cols=236 Identities=8% Similarity=0.037 Sum_probs=154.8
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEec---CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCc
Q 010871 230 HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYG---VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGR 306 (498)
Q Consensus 230 h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 306 (498)
....+.++++.++|+..++...++.|.+||.. ++... +.. ...+..+++.+++ .++++...++.|..||.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC-CC
Confidence 45678999999999888877778999999988 65443 322 2467788888754 566666567889999987 65
Q ss_pred EEEEee---cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEE
Q 010871 307 IIKKLV---VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVL 383 (498)
Q Consensus 307 ~~~~~~---~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l 383 (498)
.. .+. ....+.+++++++++++++...++.|..++.. .. .... . .......+..+.+. ++++++
T Consensus 94 ~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~--~~~~-~---~~~~~~~~~~i~~d-----~~g~l~ 160 (300)
T 2qc5_A 94 FT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT--IYEY-D---LPNKGSYPAFITLG-----SDNALW 160 (300)
T ss_dssp EE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC--EEEE-E---CSSTTCCEEEEEEC-----TTSSEE
T ss_pred eE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC--EEEc-c---CCCCCCCceeEEEC-----CCCCEE
Confidence 43 332 34678999999999988887778899999865 21 1110 0 11122334455444 888866
Q ss_pred EEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecC
Q 010871 384 LTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQG 463 (498)
Q Consensus 384 ~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~ 463 (498)
++...++.|..|+.. +. .. ..... ..........+. ++|.++++....+.|.+|+. ++... ...+..
T Consensus 161 v~~~~~~~i~~~~~~-g~---~~-~~~~~-~~~~~~~~i~~d-----~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~ 227 (300)
T 2qc5_A 161 FTENQNNSIGRITNT-GK---LE-EYPLP-TNAAAPVGITSG-----NDGALWFVEIMGNKIGRITT-TGEIS-EYDIPT 227 (300)
T ss_dssp EEETTTTEEEEECTT-CC---EE-EEECS-STTCCEEEEEEC-----TTSSEEEEETTTTEEEEECT-TCCEE-EEECSS
T ss_pred EEecCCCeEEEECCC-Cc---EE-EeeCC-CCCCCcceEEEC-----CCCCEEEEccCCCEEEEEcC-CCcEE-EEECCC
Confidence 666667889999873 21 11 11110 111112222333 48887777767788999998 43321 222334
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 464 HRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 464 h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+...+.+++++++|.+.++...++.|..|+..
T Consensus 228 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 228 PNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 45678999999999977777667899999863
No 217
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=2.4e-09 Score=111.22 Aligned_cols=282 Identities=12% Similarity=0.100 Sum_probs=170.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCC----------e-EEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKD----------V-TDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~----------V-~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
+..|++++.++.|..+|..+ ++.+..+..+... + ..+.. .+..|+.++.|+.|..+|..+|+.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARD-GRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTT-CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCC-CceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 45677777889999999988 6776666533211 0 11222 355888899999999999999999988
Q ss_pred EecC-C-----CeE-EEEEEcCCCcEEEEEe------CCCcEEEEEcCCCcEEEEeecC--C------------------
Q 010871 269 IYGV-S-----SQL-CIRFHPVNNNFLSVGN------ANKEITVFNFSTGRIIKKLVVD--S------------------ 315 (498)
Q Consensus 269 ~~~~-~-----~v~-~i~~~~~~~~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~--~------------------ 315 (498)
+... . .+. ..... ++ .++++. .+|.|+.||..+|+.+..+... .
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVV--NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred ecCcCCCCCCccccCCcEEE--CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 8753 1 111 11111 33 444443 3689999999999999887421 0
Q ss_pred ------------CeEEEEEcCCCCEEEEEcCCCe-------------------EEEEEccCCcccccccccccccCC--C
Q 010871 316 ------------EVTSMDHDHTGQLLFCGDAQGC-------------------IYSISMESHSGALSRSHRHRTTGK--R 362 (498)
Q Consensus 316 ------------~i~~l~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~~~~--~ 362 (498)
....+++++++.+++++..++. |..+|.++.+.............. .
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTA 303 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCC
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccC
Confidence 0125788898899999988764 888887755433322111000000 1
Q ss_pred ccceeeEEEeEeeEcCCCc---EEEEEEcCCcEEEEEccccccceeeEeEeecc------------------------CC
Q 010871 363 KCPVTTVQYRSFSLLAGGP---VLLTCTQDGNLSFFSVALEIQGYLTFRCSLKL------------------------AP 415 (498)
Q Consensus 363 ~~~i~~~~~~~~~~s~~~~---~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~------------------------~~ 415 (498)
..+...... . .+|. .++.++.+|.++++|..++... ....... ..
T Consensus 304 ~~~~~l~d~---~--~~G~~~~~v~~~~~~G~l~~lD~~tG~~l---~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~ 375 (689)
T 1yiq_A 304 TQHMILAEL---P--IDGKPRKVLMQAPKNGFFYVIDRATGELL---SAKGIVPQSWTKGMDMKTGRPILDEENAAYWKN 375 (689)
T ss_dssp CSCEEEEEE---E--ETTEEEEEEEECCTTSEEEEEETTTCCEE---EEEESSCCSSEEEEETTTTEEEECHHHHCTTTS
T ss_pred CCCcEEEee---c--cCCcEEEEEEEECCCCeEEEEECCCCCEe---ccccccccccccccCccCCCcccchhhccccCC
Confidence 111111111 1 2454 7889999999999999876331 1100000 00
Q ss_pred ceeee-------EEEEeeeeeccCCCEEEEEeC---------------------------------------------CC
Q 010871 416 RVHSI-------RASFCPLLSLEKGEYIVAGSE---------------------------------------------DS 443 (498)
Q Consensus 416 ~~~~~-------~~~~~~~~~~~~~~~l~~gs~---------------------------------------------dg 443 (498)
....+ ...|.+++++++..++++... +|
T Consensus 376 ~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g 455 (689)
T 1yiq_A 376 GKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSG 455 (689)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEE
T ss_pred CCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcce
Confidence 00000 002334555557777766532 37
Q ss_pred cEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCCC
Q 010871 444 NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 444 ~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~s 498 (498)
.|+.||+.+++ .+..+..+. ++..-.+...+.+++.|+.||.|+.||.+++.
T Consensus 456 ~l~A~D~~tG~--~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 456 KLIAWDPVKQQ--AAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp EEEEEETTTTE--EEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred eEEEEECCCCC--eEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 79999999965 455554433 33333555678899999999999999998763
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.20 E-value=2e-09 Score=112.36 Aligned_cols=241 Identities=11% Similarity=0.072 Sum_probs=143.7
Q ss_pred cCCCCeEEEEEccCCCEEEEE-----eCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCC---------
Q 010871 229 GHSKDVTDFDFSSNNQYIASS-----SMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNAN--------- 294 (498)
Q Consensus 229 ~h~~~V~~l~~s~~~~~l~s~-----s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d--------- 294 (498)
+|...+..++|||||++|+-+ +....|++||+.+++.+...........++|+ ++..++++. .+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~-~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSS-YDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEE-SSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEE-ecCcccccccc
Confidence 355678899999999988843 22357999999999865542111112467899 775555544 44
Q ss_pred ----CcEEEEEcCCCcE--EEEee----cCCCeEEEEEcCCCCEEEEEcC----CCeEEEEEccCCcccccccccccccC
Q 010871 295 ----KEITVFNFSTGRI--IKKLV----VDSEVTSMDHDHTGQLLFCGDA----QGCIYSISMESHSGALSRSHRHRTTG 360 (498)
Q Consensus 295 ----g~i~iwd~~~~~~--~~~~~----~~~~i~~l~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~ 360 (498)
..|++|++.++.. ...+. +...+..+.|+|+|++|+.... ...|+++++.......... .
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l------~ 277 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV------Q 277 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE------E
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE------e
Confidence 3499999987642 22232 2345788999999998765432 3489999987553322211 1
Q ss_pred CCccceeeEEEeEeeEcCCCcEEEEEE-cC---CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEE
Q 010871 361 KRKCPVTTVQYRSFSLLAGGPVLLTCT-QD---GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYI 436 (498)
Q Consensus 361 ~~~~~i~~~~~~~~~~s~~~~~l~t~s-~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 436 (498)
.+....... +. ++|..|+..+ .+ +.|..+|+......... ....... ..+ .|++ ++++|
T Consensus 278 ~~~~~~~~~-~~-----~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~--~l~~~~~--~~~--~~s~-----~g~~l 340 (693)
T 3iuj_A 278 GDLDADVSL-VD-----NKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR--DLIPERQ--QVL--TVHS-----GSGYL 340 (693)
T ss_dssp CSSSSCEEE-EE-----EETTEEEEEECTTCTTCEEEEEETTSCCGGGCE--EEECCCS--SCE--EEEE-----ETTEE
T ss_pred CCCCceEEE-Ee-----ccCCEEEEEECCCCCCCEEEEEeCCCCCccccE--EEecCCC--CEE--EEEE-----ECCEE
Confidence 122222222 22 4555555444 33 56888888754321111 1111111 122 5666 77777
Q ss_pred EEEeCC-C--cEEEEECCCCCccceeeec-CCCCCeEEEEEcCCCCEEEEEeCC----CeEEEeecCCC
Q 010871 437 VAGSED-S--NVYFYDLAKPKHSCVNKLQ-GHRFPVVAVAWNHGENLLASSDLY----GIVIVWKRAKT 497 (498)
Q Consensus 437 ~~gs~d-g--~I~iwd~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~D----g~i~iW~~~~~ 497 (498)
+....+ + .|++|++..+. ...+. .+.+.+..+.+++++..|+....+ +.|..||+.++
T Consensus 341 v~~~~~~g~~~l~~~d~~g~~---~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 341 FAEYMVDATARVEQFDYEGKR---VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEEEETTEEEEEEECTTSCE---EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEEECCeeEEEEEECCCCe---eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 766554 3 68899987532 33332 234567788888888766555444 88999998754
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.19 E-value=3.2e-09 Score=109.98 Aligned_cols=284 Identities=11% Similarity=0.070 Sum_probs=171.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCC-----------CeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSK-----------DVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~-----------~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
+..|++++.++.|.-+|..+ ++.+..+..... ....+.+ ++..|+.++.|+.|..+|..+|+.+..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRT-GNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTT-TEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCC-CcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 45666777788899999988 677666653321 0112333 356888889999999999999999999
Q ss_pred EecC-C-----CeEEEEEEcCCCcEEEEEeC------CCcEEEEEcCCCcEEEEeecCCC--------------------
Q 010871 269 IYGV-S-----SQLCIRFHPVNNNFLSVGNA------NKEITVFNFSTGRIIKKLVVDSE-------------------- 316 (498)
Q Consensus 269 ~~~~-~-----~v~~i~~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~-------------------- 316 (498)
+... . .+...-... ++ .+++++. ++.|+.+|..+|+.+..+.....
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~-~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF-KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEE-CC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 8765 1 121111111 33 4444443 68999999999999988753211
Q ss_pred -------------eEEEEEcCCCCEEEEEcCCC-------------------eEEEEEccCCcccccccccccccCCC-c
Q 010871 317 -------------VTSMDHDHTGQLLFCGDAQG-------------------CIYSISMESHSGALSRSHRHRTTGKR-K 363 (498)
Q Consensus 317 -------------i~~l~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~~~~-~ 363 (498)
...+++++++..++++..++ .|..+|.++.+.......... ... .
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~--d~wd~ 309 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG--DNWDY 309 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT--CCSCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC--ccccc
Confidence 12578889999998887765 477777654433322211000 000 0
Q ss_pred cceeeEEEeEeeEcCCC---cEEEEEEcCCcEEEEEccccccceeeEeEeeccCCce-------eee-------------
Q 010871 364 CPVTTVQYRSFSLLAGG---PVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRV-------HSI------------- 420 (498)
Q Consensus 364 ~~i~~~~~~~~~~s~~~---~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~~~------------- 420 (498)
.......+.... .+| ..++.++.+|.|.++|..++... ........... ..+
T Consensus 310 ~~~~~p~l~~~~--~dG~~~~~l~~~~~~G~l~~lD~~tG~~l---~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 384 (677)
T 1kb0_A 310 TSTQPMILADIK--IAGKPRKVILHAPKNGFFFVLDRTNGKFI---SAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD 384 (677)
T ss_dssp CCCSCCEEEEEE--ETTEEEEEEEECCTTSEEEEEETTTCCEE---EEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred ccCCCcEEEecc--cCCcEeeEEEEECCCCEEEEEECCCCCEe---ccccccccCcccccCCCCceeeccccCcCCCccE
Confidence 001111111111 356 68899999999999999876321 11110000000 000
Q ss_pred -------EEEEeeeeeccCCCEEEEEeC-------------------------------------------CCcEEEEEC
Q 010871 421 -------RASFCPLLSLEKGEYIVAGSE-------------------------------------------DSNVYFYDL 450 (498)
Q Consensus 421 -------~~~~~~~~~~~~~~~l~~gs~-------------------------------------------dg~I~iwd~ 450 (498)
...|.++++++++.++++... .|.|..||+
T Consensus 385 ~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~ 464 (677)
T 1kb0_A 385 AVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP 464 (677)
T ss_dssp CSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET
T ss_pred ECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC
Confidence 012334455557777776543 278999999
Q ss_pred CCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCCC
Q 010871 451 AKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 451 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~s 498 (498)
.+++ .+..+. +..++.+..+...+.+++.++.||.+++||.+++.
T Consensus 465 ~tG~--~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 465 VAQK--AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp TTTE--EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCc--EEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 9865 344443 33345555566678889999999999999998763
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.19 E-value=6.8e-10 Score=105.68 Aligned_cols=133 Identities=11% Similarity=0.105 Sum_probs=108.7
Q ss_pred cccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD 264 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~ 264 (498)
.+.+ |+.|+| ++.+|+++ .++.|++||+.+ ......+..|...|.++.+.+. .+++++.||.|.+||+.++.
T Consensus 86 ~lp~-V~~l~f---d~~~L~v~-~~~~l~v~dv~s-l~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~ 157 (388)
T 1xip_A 86 EIPD-VIFVCF---HGDQVLVS-TRNALYSLDLEE-LSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS 157 (388)
T ss_dssp ECTT-EEEEEE---ETTEEEEE-ESSEEEEEESSS-TTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred eCCC-eeEEEE---CCCEEEEE-cCCcEEEEEchh-hhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc
Confidence 3566 999999 67899988 889999999987 4455567778888999888765 38889999999999999887
Q ss_pred EEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE--EEEe------e----cCCCeEEEEEcCCCCEEEE
Q 010871 265 CIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI--IKKL------V----VDSEVTSMDHDHTGQLLFC 331 (498)
Q Consensus 265 ~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~------~----~~~~i~~l~~~~~~~~l~~ 331 (498)
... ....+.|++|+|.+ ++.|..||.+++|+...++. ..++ . +...|.+++|.+++.++++
T Consensus 158 ~~~---~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 158 TKQ---LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEE---EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ccc---ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 654 23589999999966 67788999999999987775 5555 2 5678999999999888775
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.18 E-value=2.9e-09 Score=111.20 Aligned_cols=242 Identities=14% Similarity=0.093 Sum_probs=142.1
Q ss_pred cccccEEEEEEecCCCCEEEEEe-----CCCcEEEEEcCCCCceeE-EeecCCCCeEEEEEccCCCEEEEEeCCCc----
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGA-----SDGTLTVCTVSDPPKVIK-LLNGHSKDVTDFDFSSNNQYIASSSMDKT---- 254 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~-----~dg~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~s~dg~---- 254 (498)
+|...+..++||| +|++||.+. ....|++||+.+ ++.+. .+.+. ....++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~t-g~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVES-KQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTT-CSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCC-CCCCccccCCc--eeccEEEe-CCCEEEEEEecCccccc
Confidence 4556788999999 899888543 335799999998 44333 22221 13568899 9999998887743
Q ss_pred ---------EEEEECCCCcE--EEEEec---CC-CeEEEEEEcCCCcEEEEEeC---CCcEEEEEcCCCc-EEEEe-ecC
Q 010871 255 ---------VRVWELTKGDC--IRVIYG---VS-SQLCIRFHPVNNNFLSVGNA---NKEITVFNFSTGR-IIKKL-VVD 314 (498)
Q Consensus 255 ---------v~iwd~~~~~~--~~~~~~---~~-~v~~i~~~~~~~~~l~~g~~---dg~i~iwd~~~~~-~~~~~-~~~ 314 (498)
|.+|++.++.. ...+.. +. ....+.|+|++..++++... ...|+++|+.++. ....+ .+.
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence 99999987642 223322 22 36788999987766666543 3589999998763 23333 344
Q ss_pred CCeEEEEEcCCCCEEE-EEcCC---CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC
Q 010871 315 SEVTSMDHDHTGQLLF-CGDAQ---GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG 390 (498)
Q Consensus 315 ~~i~~l~~~~~~~~l~-~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg 390 (498)
...... ++++|..|+ ....+ +.|..+++.......... +..+...+. .+. ++++.|+....++
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~-----l~~~~~~~~--~~s-----~~g~~lv~~~~~~ 347 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD-----LIPERQQVL--TVH-----SGSGYLFAEYMVD 347 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE-----EECCCSSCE--EEE-----EETTEEEEEEEET
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE-----EecCCCCEE--EEE-----EECCEEEEEEEEC
Confidence 444444 566666554 44333 578888887543211111 112222222 333 6777777666544
Q ss_pred ---cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC----CcEEEEECCCCCc
Q 010871 391 ---NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED----SNVYFYDLAKPKH 455 (498)
Q Consensus 391 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d----g~I~iwd~~~~~~ 455 (498)
.|++|++..... ...............+ ++++..|+....+ +.|+.||+.+++.
T Consensus 348 g~~~l~~~d~~g~~~------~~l~~p~~~~~~~~~~-----~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 348 ATARVEQFDYEGKRV------REVALPGLGSVSGFNG-----KHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TEEEEEEECTTSCEE------EEECCSSSSEEEECCC-----CTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CeeEEEEEECCCCee------EEeecCCCceEEeeec-----CCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 578888763311 1111111111111122 2366665555444 7899999987653
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.17 E-value=2.2e-08 Score=96.33 Aligned_cols=258 Identities=13% Similarity=0.124 Sum_probs=159.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeE--
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-- 276 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~-- 276 (498)
.+..|+.++.++.|..+|..+ ++.................. +..++.++.++.|..+|..+|+.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSD-GTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTT-CCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence 356788888999999999988 66665555433222222222 3478888899999999999999998887654332
Q ss_pred ----EEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCe-----EE---EEEcC--CCCEEEEEcCCCeEEEEE
Q 010871 277 ----CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEV-----TS---MDHDH--TGQLLFCGDAQGCIYSIS 342 (498)
Q Consensus 277 ----~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i-----~~---l~~~~--~~~~l~~~~~dg~i~i~d 342 (498)
..... +..++++..++.|..+|..+++.+......... .. +...| .+..+++++.++.+..+|
T Consensus 179 ~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 179 RGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred cCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 12222 246777888999999999999998877533210 00 10111 246778888899999998
Q ss_pred ccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEE
Q 010871 343 MESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRA 422 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (498)
........... ......+. .++..+++++.++.|..+|..++.. ...... ......
T Consensus 256 ~~tG~~~w~~~---------~~~~~~~~-------~~~~~l~~~~~~g~l~~~d~~tG~~---~w~~~~-~~~~~~---- 311 (376)
T 3q7m_A 256 LRSGQIMWKRE---------LGSVNDFI-------VDGNRIYLVDQNDRVMALTIDGGVT---LWTQSD-LLHRLL---- 311 (376)
T ss_dssp TTTCCEEEEEC---------CCCEEEEE-------EETTEEEEEETTCCEEEEETTTCCE---EEEECT-TTTSCC----
T ss_pred CCCCcEEeecc---------CCCCCCce-------EECCEEEEEcCCCeEEEEECCCCcE---EEeecc-cCCCcc----
Confidence 86543222111 01122221 3467888888999999999886532 221110 111100
Q ss_pred EEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEE-EEEcCCCCEEEEEeCCCeEEEeec
Q 010871 423 SFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVA-VAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 423 ~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~-l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
..|+. .+..|++++.+|.|+++|..+++ .+.........+.. ... .+..|+.++.+|.|+.|+.
T Consensus 312 -~~~~~---~~~~l~v~~~~g~l~~~d~~tG~--~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 312 -TSPVL---YNGNLVVGDSEGYLHWINVEDGR--FVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp -CCCEE---ETTEEEEECTTSEEEEEETTTCC--EEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEEC
T ss_pred -cCCEE---ECCEEEEEeCCCeEEEEECCCCc--EEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEeC
Confidence 01111 35678888999999999999865 34444432233322 222 2457888999999999873
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.16 E-value=2.1e-08 Score=93.51 Aligned_cols=231 Identities=6% Similarity=-0.009 Sum_probs=142.1
Q ss_pred cccEEEEEEecCCCC-EEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcE
Q 010871 187 KAAVTILKFGHMSSD-LLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDC 265 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~-~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 265 (498)
........|+| +++ +++++..++.|..|+.. +. ...+..+...+..++++++|+++++...++.|.+|+.. ++.
T Consensus 44 ~~~~egp~~~~-~g~~l~~~d~~~~~i~~~~~~--g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 44 ATWSEGPAWWE-AQRTLVWSDLVGRRVLGWRED--GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp CSSEEEEEEEG-GGTEEEEEETTTTEEEEEETT--SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CcCccCCeEeC-CCCEEEEEECCCCEEEEEeCC--CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence 34567899999 666 77778888999999884 33 34555567789999999999876666566789999986 553
Q ss_pred EEEEecC-----CCeEEEEEEcCCCcEEEE----EeC-------------CCcEEEEEcCCCcEEEEeecCCCeEEEEEc
Q 010871 266 IRVIYGV-----SSQLCIRFHPVNNNFLSV----GNA-------------NKEITVFNFSTGRIIKKLVVDSEVTSMDHD 323 (498)
Q Consensus 266 ~~~~~~~-----~~v~~i~~~~~~~~~l~~----g~~-------------dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~ 323 (498)
....... ..+..+++.+++ .++++ |.. .+.|..+|..+++..... .......++|+
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~s 196 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFS 196 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEEC
T ss_pred EEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEc
Confidence 3222111 235578899855 56665 321 256788887777655444 44567889999
Q ss_pred CCCCEEEEEcCC------CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEc
Q 010871 324 HTGQLLFCGDAQ------GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSV 397 (498)
Q Consensus 324 ~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~ 397 (498)
|+++.|+++... +.|++|++.... +...... ..........+. ++++|++.+ ++.+ .|.+|+.
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~--~~~~~~~pdgi~-----~d~~G~lwv-~~~~-gv~~~~~ 265 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHF--ASVPDGLPDGFC-----VDRGGWLWS-SSGT-GVCVFDS 265 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEE--ECCSSSCCCSEE-----ECTTSCEEE-CCSS-EEEEECT
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEE--EECCCCCCCeEE-----ECCCCCEEE-ecCC-cEEEECC
Confidence 999988777665 789999886432 1100000 001112223343 348888544 4444 4889987
Q ss_pred cccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEE
Q 010871 398 ALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYD 449 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd 449 (498)
... ..... ..... ...+.|.+ +++.|+.++.++ ++.++
T Consensus 266 ~g~----~~~~~--~~~~~--~~~~~f~~-----d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 266 DGQ----LLGHI--PTPGT--ASNCTFDQ-----AQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp TSC----EEEEE--ECSSC--CCEEEECT-----TSCEEEEEETTE-EEEEE
T ss_pred CCC----EEEEE--ECCCc--eeEEEEeC-----CCCEEEEEcCCe-EEEEE
Confidence 532 11111 11111 22334544 888888877764 44433
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.13 E-value=1.7e-08 Score=104.63 Aligned_cols=266 Identities=12% Similarity=0.143 Sum_probs=160.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecC-C----CCeEEEEEccCCCEEEEEeC------CCcEEEEECCCCcEEEE
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGH-S----KDVTDFDFSSNNQYIASSSM------DKTVRVWELTKGDCIRV 268 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h-~----~~V~~l~~s~~~~~l~s~s~------dg~v~iwd~~~~~~~~~ 268 (498)
+..|++++.|+.|..+|..+ ++.+..+..+ . ..+.+--...++ .++.++. +|.|..+|..+|+.+..
T Consensus 128 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAAT-GKEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCC-CCEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 46788889999999999998 7777776654 1 122211111134 5555443 78999999999999988
Q ss_pred EecCCCe---------------------------------EEEEEEcCCCcEEEEEeCCC-------------------c
Q 010871 269 IYGVSSQ---------------------------------LCIRFHPVNNNFLSVGNANK-------------------E 296 (498)
Q Consensus 269 ~~~~~~v---------------------------------~~i~~~~~~~~~l~~g~~dg-------------------~ 296 (498)
+...... ..+++.+++ .+++.+..++ .
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 8653211 246778854 5666665553 5
Q ss_pred EEEEEcCCCcEEEEeecC----------CCeEEEEEcCCC---CEEEEEcCCCeEEEEEccCCcccccccccccc----c
Q 010871 297 ITVFNFSTGRIIKKLVVD----------SEVTSMDHDHTG---QLLFCGDAQGCIYSISMESHSGALSRSHRHRT----T 359 (498)
Q Consensus 297 i~iwd~~~~~~~~~~~~~----------~~i~~l~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~ 359 (498)
|..+|..+|+.+..++.. ....-+....+| ..+++++.+|.|+++|..+.+........... .
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence 999999999999887521 122333333467 68899999999999998654432211110000 0
Q ss_pred CCCcccee-------------------eEEEeEeeEcCCCcEEEEEEcC-------------------------------
Q 010871 360 GKRKCPVT-------------------TVQYRSFSLLAGGPVLLTCTQD------------------------------- 389 (498)
Q Consensus 360 ~~~~~~i~-------------------~~~~~~~~~s~~~~~l~t~s~d------------------------------- 389 (498)
.....++. ...|..++++|+..++++...+
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 444 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence 00000010 0122345556888888876542
Q ss_pred ------------CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccc
Q 010871 390 ------------GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSC 457 (498)
Q Consensus 390 ------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~ 457 (498)
|.|..||+.++.. .... ....... ...+.. .+.++++++.||.+++||..+++ .
T Consensus 445 ~~~~~~~~~~~~g~l~A~D~~tG~~---~W~~--~~~~~~~--~g~~~~-----~g~~v~~g~~dg~l~a~D~~tG~--~ 510 (677)
T 1kb0_A 445 FFNAEPPKSKPFGRLLAWDPVAQKA---AWSV--EHVSPWN--GGTLTT-----AGNVVFQGTADGRLVAYHAATGE--K 510 (677)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEE---EEEE--EESSSCC--CCEEEE-----TTTEEEEECTTSEEEEEETTTCC--E
T ss_pred ccccccCCCCCccEEEEEeCCCCcE---Eeec--CCCCCCc--CcceEe-----CCCEEEEECCCCcEEEEECCCCc--e
Confidence 6788888876522 2222 2221111 112333 67888889999999999999965 5
Q ss_pred eeeecCCC-CCeEEEEEcCCCCEEEE
Q 010871 458 VNKLQGHR-FPVVAVAWNHGENLLAS 482 (498)
Q Consensus 458 ~~~~~~h~-~~V~~l~~sp~~~~l~s 482 (498)
+..+.... ....-+.|..+|++++.
T Consensus 511 lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 511 LWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred eeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 66665332 22334566678875443
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.13 E-value=8.2e-10 Score=104.85 Aligned_cols=256 Identities=11% Similarity=0.066 Sum_probs=153.0
Q ss_pred EEEEecCCCCEEEEEe----------CCCcEEEEEcCCCCceeEEeecC-------CCCeEEEEEccCCCEEEEEeC--C
Q 010871 192 ILKFGHMSSDLLAYGA----------SDGTLTVCTVSDPPKVIKLLNGH-------SKDVTDFDFSSNNQYIASSSM--D 252 (498)
Q Consensus 192 ~v~~sp~~~~~lasg~----------~dg~i~iwd~~~~~~~~~~~~~h-------~~~V~~l~~s~~~~~l~s~s~--d 252 (498)
.++++| ++++|+++. .++.|.+||+.+ .+.+..+..+ ......+.++|||++|+.+.. +
T Consensus 69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~ 146 (368)
T 1mda_H 69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146 (368)
T ss_dssp EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence 799999 777777765 378899999998 7777777533 123568999999999998875 3
Q ss_pred CcEEE--EECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC-----CcEEEE----ee-cCCCeEEE
Q 010871 253 KTVRV--WELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST-----GRIIKK----LV-VDSEVTSM 320 (498)
Q Consensus 253 g~v~i--wd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~-----~~~~~~----~~-~~~~i~~l 320 (498)
..|.+ +|..+ +..+..... ....|++...+++.+.||.+.+.|+.+ ++.... +. ...+.
T Consensus 147 ~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--- 217 (368)
T 1mda_H 147 AAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--- 217 (368)
T ss_dssp CEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---
T ss_pred CeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---
Confidence 56888 89877 455543322 223455667777778899999999987 443211 11 12222
Q ss_pred EEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-C--------Cc
Q 010871 321 DHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-D--------GN 391 (498)
Q Consensus 321 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-d--------g~ 391 (498)
. .+++..++..+. +.|.+.|+...........................+..+.++++++.++++.. . +.
T Consensus 218 ~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~ 295 (368)
T 1mda_H 218 Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295 (368)
T ss_dssp E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCC
Confidence 3 566666666666 99999998643322221111000000000000000011234499988887644 2 35
Q ss_pred EEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCC-EEEEEe-CCCcEEEEECCCCCccceeeecCCCCCeE
Q 010871 392 LSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGE-YIVAGS-EDSNVYFYDLAKPKHSCVNKLQGHRFPVV 469 (498)
Q Consensus 392 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs-~dg~I~iwd~~~~~~~~~~~~~~h~~~V~ 469 (498)
+.++|+.+... ... .........+.|++ ||+ ++++.. .++.|.++|+.+. +.+..+.... ...
T Consensus 296 ~~ViD~~t~~v-----v~~--i~vg~~p~gi~~s~-----Dg~~l~va~~~~~~~VsVID~~t~--kvv~~I~vg~-~P~ 360 (368)
T 1mda_H 296 TSSVTASVGQT-----SGP--ISNGHDSDAIIAAQ-----DGASDNYANSAGTEVLDIYDAASD--QDQSSVELDK-GPE 360 (368)
T ss_dssp EEEEESSSCCE-----EEC--CEEEEEECEEEECC-----SSSCEEEEEETTTTEEEEEESSSC--EEEEECCCCS-CCC
T ss_pred EEEEECCCCeE-----EEE--EECCCCcceEEECC-----CCCEEEEEccCCCCeEEEEECCCC--cEEEEEECCC-CCC
Confidence 66999886421 111 11111233345555 887 566666 5899999999994 4677776543 345
Q ss_pred EEEEcC
Q 010871 470 AVAWNH 475 (498)
Q Consensus 470 ~l~~sp 475 (498)
.+++.+
T Consensus 361 ~i~~~~ 366 (368)
T 1mda_H 361 SLSVQN 366 (368)
T ss_dssp EEECCC
T ss_pred EEEeec
Confidence 666553
No 226
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.10 E-value=2.6e-08 Score=93.03 Aligned_cols=197 Identities=9% Similarity=0.093 Sum_probs=128.2
Q ss_pred ccccEEEEEEecCC-CCEEEEEeCCCcEEEEEcCCCCceeEE-eec----CCCCeEEEEEccCCCEEEEEeCC-------
Q 010871 186 CKAAVTILKFGHMS-SDLLAYGASDGTLTVCTVSDPPKVIKL-LNG----HSKDVTDFDFSSNNQYIASSSMD------- 252 (498)
Q Consensus 186 h~~~V~~v~~sp~~-~~~lasg~~dg~i~iwd~~~~~~~~~~-~~~----h~~~V~~l~~s~~~~~l~s~s~d------- 252 (498)
+...+.++++++ + +.++++.. .+.|.+||.. ++.... ... +...+.++++.++|+++++...+
T Consensus 69 ~~~~~~~i~~~~-~~g~l~v~~~-~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 69 YGGIPAGCQCDR-DANQLFVADM-RLGLLVVQTD--GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY 144 (314)
T ss_dssp EECCEEEEEECS-SSSEEEEEET-TTEEEEEETT--SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC
T ss_pred CCCCCceEEEec-CCCcEEEEEC-CCCEEEEeCC--CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccc
Confidence 456789999998 6 65555444 4478899986 333322 211 12458899999999887776654
Q ss_pred --------CcEEEEECCCCcEEEEEecCCCeEEEEEE----cCCCcEEEEEeCCCcEEEEEcC-CCcE-----EEEee-c
Q 010871 253 --------KTVRVWELTKGDCIRVIYGVSSQLCIRFH----PVNNNFLSVGNANKEITVFNFS-TGRI-----IKKLV-V 313 (498)
Q Consensus 253 --------g~v~iwd~~~~~~~~~~~~~~~v~~i~~~----~~~~~~l~~g~~dg~i~iwd~~-~~~~-----~~~~~-~ 313 (498)
+.|..|+.. ++.............++++ +++..++++...++.|.+||+. +++. ...+. +
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp CBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred cccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence 467777765 5554444444556788999 8654555665678899999986 4442 12222 1
Q ss_pred C-CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEE-EcCCc
Q 010871 314 D-SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC-TQDGN 391 (498)
Q Consensus 314 ~-~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~-s~dg~ 391 (498)
. ..+..++++++|+++++...++.|.+|+.+.... .... ..+...+.++.+. ++++.|+++ ..++.
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~--~~~~-----~~~~~~~~~i~~~-----~dg~~l~v~~~~~~~ 291 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP--KMRI-----RCPFEKPSNLHFK-----PQTKTIFVTEHENNA 291 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC--SEEE-----ECSSSCEEEEEEC-----TTSSEEEEEETTTTE
T ss_pred CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE--eEEE-----eCCCCCceeEEEC-----CCCCEEEEEeCCCCe
Confidence 1 5688999999999888887888999998753221 1111 1222445556554 899855544 45678
Q ss_pred EEEEEccc
Q 010871 392 LSFFSVAL 399 (498)
Q Consensus 392 i~iwd~~~ 399 (498)
|..|++..
T Consensus 292 l~~~~~~~ 299 (314)
T 1pjx_A 292 VWKFEWQR 299 (314)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 99998763
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.08 E-value=6.1e-08 Score=100.63 Aligned_cols=266 Identities=13% Similarity=0.164 Sum_probs=157.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeec--CCCCeEEEEEcc---CCCEEEEEe-----CCCcEEEEECCCCcEEEEE
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNG--HSKDVTDFDFSS---NNQYIASSS-----MDKTVRVWELTKGDCIRVI 269 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~s~---~~~~l~s~s-----~dg~v~iwd~~~~~~~~~~ 269 (498)
+..|++++.|+.|..+|..+ ++.+..+.. +......+..+| ++..++..+ .+|.|..||..+|+.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~T-G~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKT-GQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCC-CCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 46788889999999999998 666665543 211111111122 454444332 3789999999999999887
Q ss_pred ecCC-------------------------------Ce-EEEEEEcCCCcEEEEEeCCC-------------------cEE
Q 010871 270 YGVS-------------------------------SQ-LCIRFHPVNNNFLSVGNANK-------------------EIT 298 (498)
Q Consensus 270 ~~~~-------------------------------~v-~~i~~~~~~~~~l~~g~~dg-------------------~i~ 298 (498)
.... .+ ..+++.|+. .+++.+..++ .|.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 6310 00 146788754 5777777665 399
Q ss_pred EEEcCCCcEEEEeecC----------CCeEEEEEcCCCC---EEEEEcCCCeEEEEEccCCcccccccccccc-------
Q 010871 299 VFNFSTGRIIKKLVVD----------SEVTSMDHDHTGQ---LLFCGDAQGCIYSISMESHSGALSRSHRHRT------- 358 (498)
Q Consensus 299 iwd~~~~~~~~~~~~~----------~~i~~l~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------- 358 (498)
.+|..+|+.+..++.. ..+.......+|+ .++.++.+|.++++|..+.+...........
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 9999999999888521 1222222223554 7889999999999998654432111000000
Q ss_pred --------------cCCCccc------eeeEEEeEeeEcCCCcEEEEEEc------------------------------
Q 010871 359 --------------TGKRKCP------VTTVQYRSFSLLAGGPVLLTCTQ------------------------------ 388 (498)
Q Consensus 359 --------------~~~~~~~------i~~~~~~~~~~s~~~~~l~t~s~------------------------------ 388 (498)
....... .-...|..++++|+..++++...
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 0000000 00112334556688887777643
Q ss_pred ---------------CCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCC
Q 010871 389 ---------------DGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 389 ---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
+|.|..||+.++.. .... ....... ...+.. .+.++++|+.||.|+.||..++
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG~~---~W~~--~~~~~~~--~g~~~t-----agglvf~gt~dg~l~a~D~~tG 506 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQQA---AWEV--PYVTIFN--GGTLST-----AGNLVFEGSADGRVIAYAADTG 506 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTTEE---EEEE--EESSSCC--CCEEEE-----TTTEEEEECTTSEEEEEETTTC
T ss_pred cCcccccCCCCCCCcceeEEEEECCCCCe---EeEc--cCCCCcc--CccceE-----CCCEEEEECCCCcEEEEECCCC
Confidence 36688888876532 2222 2211111 112232 6889999999999999999996
Q ss_pred CccceeeecCCCCC-eEEEEEcCCCCEEE
Q 010871 454 KHSCVNKLQGHRFP-VVAVAWNHGENLLA 481 (498)
Q Consensus 454 ~~~~~~~~~~h~~~-V~~l~~sp~~~~l~ 481 (498)
+ .+.+++...+. ..-+.|..+|++.+
T Consensus 507 ~--~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 507 E--KLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp C--EEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred c--cceeeeCCCCcccCceEEEECCEEEE
Confidence 5 46666543222 23466777887443
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=1.1e-07 Score=90.70 Aligned_cols=196 Identities=11% Similarity=0.071 Sum_probs=126.8
Q ss_pred cCCCC-EEEEEeCCCcEEEEEcCCC---CceeEEee------c-CCCCeEEEEEccCCCEEEEEeCC------CcEEEEE
Q 010871 197 HMSSD-LLAYGASDGTLTVCTVSDP---PKVIKLLN------G-HSKDVTDFDFSSNNQYIASSSMD------KTVRVWE 259 (498)
Q Consensus 197 p~~~~-~lasg~~dg~i~iwd~~~~---~~~~~~~~------~-h~~~V~~l~~s~~~~~l~s~s~d------g~v~iwd 259 (498)
+ +++ +++.|..++.|.|+|+.+. .+..+++. . ....-..+...|+| .++++..+ |.|.+.|
T Consensus 93 ~-~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 I-ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp C-CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred c-cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 5 555 4555667899999999753 24555552 1 11234567788999 77776555 7899999
Q ss_pred CCCCcEEEEEecCC-C---eEEEEEEcCCCcEEEEEe-------------------CCCcEEEEEcCCCcEEEEeecC--
Q 010871 260 LTKGDCIRVIYGVS-S---QLCIRFHPVNNNFLSVGN-------------------ANKEITVFNFSTGRIIKKLVVD-- 314 (498)
Q Consensus 260 ~~~~~~~~~~~~~~-~---v~~i~~~~~~~~~l~~g~-------------------~dg~i~iwd~~~~~~~~~~~~~-- 314 (498)
..+++.+.++.... . ...+.|+|++ +.+++.. .+.+|.+||+.+++.+.++...
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 99999999887432 1 2357889965 4666653 3689999999999888888654
Q ss_pred -CCeEEEEE--cCCCCEEEEEc------CCCeEEEEEccCCcccccccc--cccccCC-----------CccceeeEEEe
Q 010871 315 -SEVTSMDH--DHTGQLLFCGD------AQGCIYSISMESHSGALSRSH--RHRTTGK-----------RKCPVTTVQYR 372 (498)
Q Consensus 315 -~~i~~l~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~--~~~~~~~-----------~~~~i~~~~~~ 372 (498)
.....+.| +|+++++++++ .++.|.+|..+...-...... ....... .......
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~---- 325 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD---- 325 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC----
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE----
Confidence 34556656 99999887776 466888776653111110100 0000000 0112333
Q ss_pred EeeEcCCCcEEEEEEc-CCcEEEEEcccc
Q 010871 373 SFSLLAGGPVLLTCTQ-DGNLSFFSVALE 400 (498)
Q Consensus 373 ~~~~s~~~~~l~t~s~-dg~i~iwd~~~~ 400 (498)
+.++++|++|+++.. .+.|.+||+...
T Consensus 326 -I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 326 -IDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp -EEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred -EEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 445599999988775 678999998643
No 229
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.99 E-value=3e-07 Score=85.23 Aligned_cols=201 Identities=12% Similarity=0.094 Sum_probs=124.9
Q ss_pred eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccc
Q 010871 275 QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSH 354 (498)
Q Consensus 275 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 354 (498)
.-+..|+++++.++++...++.|..||..+++. ..+.....+.+++++++|+++++. ++.|.+||.+..........
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~ 91 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATV 91 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEEC
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEec
Confidence 347899998788888888899999999988765 455667889999999999955543 56788998764332211110
Q ss_pred cccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC---------CcEEEEEccccccceeeEeEeeccCCceeeeEEEEe
Q 010871 355 RHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD---------GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFC 425 (498)
Q Consensus 355 ~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (498)
. .......+.. +.++++|+++++.... ....+|.+..... ... . ..... ......|+
T Consensus 92 ~---~~~~~~~~~d-----i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~-~-~~~~~--~pngi~~s 157 (297)
T 3g4e_A 92 D---NDKKNNRFND-----GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH--VKK-Y-FDQVD--ISNGLDWS 157 (297)
T ss_dssp C---TTCSSEEEEE-----EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC--EEE-E-EEEES--BEEEEEEC
T ss_pred C---CCCCCCCCCC-----EEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC--EEE-E-eeccc--cccceEEc
Confidence 0 0111122334 4445999977655432 2345665543211 111 0 00000 11122444
Q ss_pred eeeeccCCCEE-EEEeCCCcEEEEECC--CCCc---cceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 426 PLLSLEKGEYI-VAGSEDSNVYFYDLA--KPKH---SCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 426 ~~~~~~~~~~l-~~gs~dg~I~iwd~~--~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
++++.| ++.+.++.|.+|++. ++.. ..+..+..+.+.+..+++.++|++.++....+.|.+|+.+++
T Consensus 158 -----pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 158 -----LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp -----TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred -----CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 489866 455567899999974 4332 122333344567889999999998888777889999998754
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.98 E-value=1.2e-10 Score=111.67 Aligned_cols=180 Identities=12% Similarity=0.052 Sum_probs=101.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC--eE
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSS--QL 276 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--v~ 276 (498)
++..|++++.||.|+.||..+ ++.+..+.. +.+.+..+..++..+++++.||.|..||..+|+.+..+..+.. +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT-CCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 567899999999999999998 777777765 5566666667787888888999999999999987766543311 00
Q ss_pred -EEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccccccc
Q 010871 277 -CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHR 355 (498)
Q Consensus 277 -~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 355 (498)
...+. .+..+++|+.++.|+.||..+|+.+..+..... ..++|++..+++++.++.|+.||..+.........
T Consensus 85 ~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~- 158 (369)
T 2hz6_A 85 ASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY- 158 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEE-
T ss_pred cCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEec-
Confidence 00111 234677788899999999999999888754332 34556888899999999999998865432221110
Q ss_pred ccccCCCccceeeEEEeEeeEcCCC---cEEEEEEcCCcEEEEEcccc
Q 010871 356 HRTTGKRKCPVTTVQYRSFSLLAGG---PVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 356 ~~~~~~~~~~i~~~~~~~~~~s~~~---~~l~t~s~dg~i~iwd~~~~ 400 (498)
. .+....+..+. ..+++++.||.|..||..++
T Consensus 159 -----------~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 159 -----------F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp -----------E--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred -----------c--cccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 0 01112222221 56778899999999999865
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.97 E-value=2.7e-06 Score=77.35 Aligned_cols=249 Identities=11% Similarity=0.049 Sum_probs=144.7
Q ss_pred EEEEEeCCCcEEEEEcCCCCce----eEEeecCCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCcEEEEEecC-CCe
Q 010871 202 LLAYGASDGTLTVCTVSDPPKV----IKLLNGHSKDVTDFDFSSNNQYIA-SSSMDKTVRVWELTKGDCIRVIYGV-SSQ 275 (498)
Q Consensus 202 ~lasg~~dg~i~iwd~~~~~~~----~~~~~~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~-~~v 275 (498)
+|+.+.. +.|+.+++...... ...+......+.+++|++++..|+ +-...+.|..++...+.....+... ..+
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4444443 46888887752210 112222234578999999765555 4455788999999866544333332 567
Q ss_pred EEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec-CCCeEEEEEcCCCCEEEEEcC---CCeEEEEEccCCccccc
Q 010871 276 LCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCGDA---QGCIYSISMESHSGALS 351 (498)
Q Consensus 276 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~ 351 (498)
..+++.++++.++++....+.|.++++........... ......++++|++..|+.+.. .+.|..++++.......
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~ 161 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL 161 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE
Confidence 89999997777777777788999999865433222222 256789999997666555543 46888888764322111
Q ss_pred ccccccccCCCccceeeEEEeEeeEcCCCcEEEEE-EcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeec
Q 010871 352 RSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC-TQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSL 430 (498)
Q Consensus 352 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (498)
. .........+.+ ++++..|+.+ ...+.|.++|....... . ......... ....
T Consensus 162 ~-------~~~~~~P~gia~-----d~~~~~lyv~d~~~~~I~~~~~~g~~~~--~---~~~~~~~P~----gi~~---- 216 (267)
T 1npe_A 162 A-------QDNLGLPNGLTF-----DAFSSQLCWVDAGTHRAECLNPAQPGRR--K---VLEGLQYPF----AVTS---- 216 (267)
T ss_dssp E-------CTTCSCEEEEEE-----ETTTTEEEEEETTTTEEEEEETTEEEEE--E---EEECCCSEE----EEEE----
T ss_pred E-------ECCCCCCcEEEE-----cCCCCEEEEEECCCCEEEEEecCCCceE--E---EecCCCCce----EEEE----
Confidence 0 011122344444 4876665544 45678999998743111 1 111111111 1111
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCCccceeeecCCC-CCeEEEEEcCCCC
Q 010871 431 EKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHR-FPVVAVAWNHGEN 478 (498)
Q Consensus 431 ~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~ 478 (498)
.++.++++....+.|.++|..+++ .+..+.... .....|++.|++.
T Consensus 217 d~~~lyva~~~~~~v~~~d~~~g~--~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 217 YGKNLYYTDWKTNSVIAMDLAISK--EMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTEEEEEETTTTEEEEEETTTTE--EEEEECCSSCCCCCCEEEECSCC
T ss_pred eCCEEEEEECCCCeEEEEeCCCCC--ceEEEccccccccceeeecCccC
Confidence 134444444456899999998854 455554332 2467888888764
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.95 E-value=2.2e-06 Score=81.99 Aligned_cols=231 Identities=9% Similarity=0.032 Sum_probs=140.0
Q ss_pred cCCCEEEE-EeCCCcEEEEECCCC----cEEEEEe--------cCCCeEEEEEEcCCCcEEEEEeCC------CcEEEEE
Q 010871 241 SNNQYIAS-SSMDKTVRVWELTKG----DCIRVIY--------GVSSQLCIRFHPVNNNFLSVGNAN------KEITVFN 301 (498)
Q Consensus 241 ~~~~~l~s-~s~dg~v~iwd~~~~----~~~~~~~--------~~~~v~~i~~~~~~~~~l~~g~~d------g~i~iwd 301 (498)
.++++|+. +..++.|.++|+.+. +..+++. +......+...|++ +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 77777665 556788999999755 6666663 11244567778865 65555444 7899999
Q ss_pred cCCCcEEEEeecC----CCeEEEEEcCCCCEEEEEc-------------------CCCeEEEEEccCCcccccccccccc
Q 010871 302 FSTGRIIKKLVVD----SEVTSMDHDHTGQLLFCGD-------------------AQGCIYSISMESHSGALSRSHRHRT 358 (498)
Q Consensus 302 ~~~~~~~~~~~~~----~~i~~l~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~ 358 (498)
..+++.+.++... .--..+-|+|+++.+++.. ....|.+||+...+ .......
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~v-- 246 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTL-- 246 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEES--
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEec--
Confidence 9999999988532 1233577899999888874 36899999997532 2111111
Q ss_pred cCCCccceeeEEEeEeeEcCCCcEEEEEEc------CCcEEEEEccccccceeeEeEeeccCC-----cee-------ee
Q 010871 359 TGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ------DGNLSFFSVALEIQGYLTFRCSLKLAP-----RVH-------SI 420 (498)
Q Consensus 359 ~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~-------~~ 420 (498)
.........+. +.++|+++++++++. +++|.+|....+ ............ .+. ..
T Consensus 247 -g~~g~~P~~i~---f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g---~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 247 -GEENRMALELR---PLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG---KWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp -CTTEEEEEEEE---ECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT---EEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred -CCCCCccceeE---eeECCCCCEEEEEEeeeccCCCceEEEEEecCC---ceeEEEEEeCCCccccccccccccccccC
Confidence 10111112222 334699998888774 568887776532 111111110100 000 00
Q ss_pred EEEEeeeeeccCCCEEEEEeC-CCcEEEEECCCC-CccceeeecCCC--------------CCeEEEEEcCCCCEEEEEe
Q 010871 421 RASFCPLLSLEKGEYIVAGSE-DSNVYFYDLAKP-KHSCVNKLQGHR--------------FPVVAVAWNHGENLLASSD 484 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~gs~-dg~I~iwd~~~~-~~~~~~~~~~h~--------------~~V~~l~~sp~~~~l~s~~ 484 (498)
...-..+.+++||++|+++.. .+.|.+||+... ....+..+.... +....++++|||++|+++.
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 011122334459999988776 579999998632 233444443220 1368899999999999887
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.90 E-value=2.3e-09 Score=102.81 Aligned_cols=202 Identities=12% Similarity=0.110 Sum_probs=112.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecC--CCeE-
Q 010871 242 NNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD--SEVT- 318 (498)
Q Consensus 242 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~i~- 318 (498)
++..|++++.||.|..||..+|+.+..+.. ..+.+..+.. ++.++++++.||.|+.||..+|+.+..+... ..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 467899999999999999999999999887 5555444444 3456777789999999999999877665422 1110
Q ss_pred EEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 319 SMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 319 ~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
+..+. .+..+++++.++.|+.||..+.+...... .+. ...+ +|++..+++++.|+.|+.||..
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~-------~~~----~~~~-----~p~~~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS-------SAF----ADSL-----SPSTSLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------------------EEEEEEEEEEECCCSS
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec-------CCC----cccc-----cccCCEEEEEecCCEEEEEECC
Confidence 00111 34567888889999999886544322111 111 1111 2578899999999999999998
Q ss_pred ccccceeeEeEeeccCCceeeeEEEEeeeeeccCC---CEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEE-EEEc
Q 010871 399 LEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKG---EYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVA-VAWN 474 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~-l~~s 474 (498)
++.... ..... .+.+.....+. ..+++++.||.|+.||..+++ .+..+.. ..++.. ..++
T Consensus 149 tG~~~W---~~~~~----------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~--~~W~~~~-~~pv~~~~~~~ 212 (369)
T 2hz6_A 149 TRELRW---NATYF----------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD--VLWIQNY-ASPVVAFYVWQ 212 (369)
T ss_dssp SSSCCC---EEEEE----------EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC--EEEEEEC-SSCEEEEEECT
T ss_pred CCCEEE---eEecc----------cccCccccCCccccceEEEECCCCEEEEEECCCCc--EEEEecC-CCceEEEEEec
Confidence 653211 11100 11222222221 557778899999999999865 3455443 344443 4455
Q ss_pred CCCC
Q 010871 475 HGEN 478 (498)
Q Consensus 475 p~~~ 478 (498)
+++.
T Consensus 213 ~dg~ 216 (369)
T 2hz6_A 213 REGL 216 (369)
T ss_dssp TSSC
T ss_pred CCce
Confidence 5664
No 234
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.87 E-value=3.4e-07 Score=94.74 Aligned_cols=284 Identities=13% Similarity=0.107 Sum_probs=162.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCC----------e-EEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKD----------V-TDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~----------V-~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
+..|++++.++.|.-+|..+ ++.+..+...... + ..+.+ .+..|+.++.|+.|..+|..+|+.+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAAS-GKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTT-CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCC-ChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 45666777788899999887 6666665432211 0 11222 245788888999999999999999988
Q ss_pred EecCC-----CeE-EEEEEcCCCcEEEEEeC------CCcEEEEEcCCCcEEEEeecC--C-------------------
Q 010871 269 IYGVS-----SQL-CIRFHPVNNNFLSVGNA------NKEITVFNFSTGRIIKKLVVD--S------------------- 315 (498)
Q Consensus 269 ~~~~~-----~v~-~i~~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~--~------------------- 315 (498)
+.... .+. ..... ++ .++++.. +|.|..+|..+|+.+..+... .
T Consensus 143 ~~~~~~~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp EECSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred eccCCCCCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 87531 111 11111 33 4455533 589999999999999887521 0
Q ss_pred -----------CeEEEEEcCCCCEEEEEcCCCe-------------------EEEEEccCCcccccccccccccCC--Cc
Q 010871 316 -----------EVTSMDHDHTGQLLFCGDAQGC-------------------IYSISMESHSGALSRSHRHRTTGK--RK 363 (498)
Q Consensus 316 -----------~i~~l~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~~~~--~~ 363 (498)
....++++++...++++..++. |..+|.++................ ..
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 0124678888888888887764 777776554433222111000000 00
Q ss_pred cceeeEEEeEeeEcCCCc---EEEEEEcCCcEEEEEccccccceee------EeEeec--cCCce-------e--e-e--
Q 010871 364 CPVTTVQYRSFSLLAGGP---VLLTCTQDGNLSFFSVALEIQGYLT------FRCSLK--LAPRV-------H--S-I-- 420 (498)
Q Consensus 364 ~~i~~~~~~~~~~s~~~~---~l~t~s~dg~i~iwd~~~~~~~~~~------~~~~~~--~~~~~-------~--~-~-- 420 (498)
.+.....+. .+|+ .++.++.+|.+.++|..++...... ...... ....+ . . +
T Consensus 300 ~~~~~~d~~-----~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 374 (668)
T 1kv9_A 300 QQITLAELN-----IDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW 374 (668)
T ss_dssp SCEEEEEEE-----ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred CCcEEEEec-----cCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEEC
Confidence 122111111 3554 6888999999999998876321000 000000 00000 0 0 0
Q ss_pred -----EEEEeeeeeccCCCEEEEE------------------------------------eCCCcEEEEECCCCCcccee
Q 010871 421 -----RASFCPLLSLEKGEYIVAG------------------------------------SEDSNVYFYDLAKPKHSCVN 459 (498)
Q Consensus 421 -----~~~~~~~~~~~~~~~l~~g------------------------------------s~dg~I~iwd~~~~~~~~~~ 459 (498)
...|.+++++++..+++.. ..+|.|+.||+.+++ .+.
T Consensus 375 p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~--~~W 452 (668)
T 1kv9_A 375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK--AAW 452 (668)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE--EEE
T ss_pred CCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc--EEE
Confidence 0012334444455554431 134789999999865 344
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 460 KLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 460 ~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
....+ .++....+...+.+|+.++.||.|++||.+++
T Consensus 453 ~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 453 KVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp EEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred EccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 44332 23333334446788999999999999998875
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.84 E-value=4.8e-07 Score=89.55 Aligned_cols=255 Identities=8% Similarity=0.037 Sum_probs=155.2
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCCCceeEEeec-CCCCeEEEEE-c-cCCCEEEEEe------------------CCCcEE
Q 010871 199 SSDLLAYGA-SDGTLTVCTVSDPPKVIKLLNG-HSKDVTDFDF-S-SNNQYIASSS------------------MDKTVR 256 (498)
Q Consensus 199 ~~~~lasg~-~dg~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~-s-~~~~~l~s~s------------------~dg~v~ 256 (498)
+|++|.... .++.|.+.|+.+ .+....+.- ....+..+++ + |+++++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t-~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDV-MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTT-TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCC-ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 455555554 466799999998 776665542 2346788998 5 8999999885 245799
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCC--------------------------------------CcEE
Q 010871 257 VWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNAN--------------------------------------KEIT 298 (498)
Q Consensus 257 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d--------------------------------------g~i~ 298 (498)
+.|.++.+.+.++.-....-.++++|++. ++++.+.+ +.|.
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999999999888655566777888654 44444432 2478
Q ss_pred EEEcCC--CcE-EEEeecCCCeEEEEEcCCCCEEEEEc-CCCeEEEEEccCCcc----cccccccccccCCCccceeeEE
Q 010871 299 VFNFST--GRI-IKKLVVDSEVTSMDHDHTGQLLFCGD-AQGCIYSISMESHSG----ALSRSHRHRTTGKRKCPVTTVQ 370 (498)
Q Consensus 299 iwd~~~--~~~-~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~i~~~~ 370 (498)
|.|.++ ++. +..+.......++.++|||+++++++ .+..|.++|+..... .+...........-......+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~- 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT- 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEE-
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceE-
Confidence 888887 555 56666667788999999999776655 678999999975421 110000000001111122333
Q ss_pred EeEeeEcCCCcEEEEEEcCCcEEEEEccccccce-----eeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeC---C
Q 010871 371 YRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGY-----LTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE---D 442 (498)
Q Consensus 371 ~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~---d 442 (498)
+++++|...++...|++|.+||+......+ ................ ..-......+||++|++... |
T Consensus 337 ----aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~-~~~~g~t~~~DGk~l~~~Nk~skd 411 (595)
T 1fwx_A 337 ----AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHL-KTVMGETLDATNDWLVCLSKFSKD 411 (595)
T ss_dssp ----EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEE-EETTTTSTTCCSSEEEEEESCCTT
T ss_pred ----EECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccc-eeccceEeCCCCCEEEEcCCCCcc
Confidence 444999555667789999999997621100 1111111111110000 01011233469999998765 3
Q ss_pred Cc----------EEEEECCCCCccceeee
Q 010871 443 SN----------VYFYDLAKPKHSCVNKL 461 (498)
Q Consensus 443 g~----------I~iwd~~~~~~~~~~~~ 461 (498)
+. -.++|+..++..++...
T Consensus 412 r~~~~gp~~~~~~ql~dis~~~m~lv~d~ 440 (595)
T 1fwx_A 412 RFLNVGPLKPENDQLIDISGDKMVLVHDG 440 (595)
T ss_dssp SSCCCCSSCCEEEEEEECSSSSCEEEEEE
T ss_pred ccccCCCCCCCcceEEEcCCCcEEEEEEE
Confidence 32 28899977665555443
No 236
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.84 E-value=1.7e-06 Score=81.32 Aligned_cols=198 Identities=10% Similarity=0.027 Sum_probs=119.3
Q ss_pred eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccc
Q 010871 275 QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSH 354 (498)
Q Consensus 275 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 354 (498)
.....|+|+++.++++...++.|..||..+++. ..+.....+.+++++++|+++++. .+ .|++||............
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeC
Confidence 346789998778888888889999999987764 344556789999999999877654 44 488888754332111100
Q ss_pred cccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC----CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeec
Q 010871 355 RHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD----GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSL 430 (498)
Q Consensus 355 ~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (498)
. .......+..+. ++++|+++++...+ +...||.+..+ ..... ...... .....|+
T Consensus 128 ~---~~~~~~~~~~i~-----~d~~G~l~v~~~~~~~~~~~~~l~~~~~g---~~~~~--~~~~~~--~~~i~~s----- 187 (326)
T 2ghs_A 128 E---SDLPGNRSNDGR-----MHPSGALWIGTMGRKAETGAGSIYHVAKG---KVTKL--FADISI--PNSICFS----- 187 (326)
T ss_dssp S---TTCTTEEEEEEE-----ECTTSCEEEEEEETTCCTTCEEEEEEETT---EEEEE--EEEESS--EEEEEEC-----
T ss_pred C---CCCCCCCCCCEE-----ECCCCCEEEEeCCCcCCCCceEEEEEeCC---cEEEe--eCCCcc--cCCeEEc-----
Confidence 0 001112344444 44999877655432 23344444321 11110 000001 1122444
Q ss_pred cCCCEEEEE-eCCCcEEEEECC--CC-Ccc---ceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 431 EKGEYIVAG-SEDSNVYFYDLA--KP-KHS---CVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 431 ~~~~~l~~g-s~dg~I~iwd~~--~~-~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
++++.++.+ +.++.|.+|++. ++ ... .+..+......+.++++.++|.+.++...++.|.+|+.+
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 489876554 456899999986 44 211 122333344567899999999988777667899999874
No 237
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.79 E-value=1.6e-06 Score=87.85 Aligned_cols=281 Identities=10% Similarity=0.060 Sum_probs=157.0
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCCceeEEeecCCC-C---------e-EEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 200 SDLLAYGAS-DGTLTVCTV-SDPPKVIKLLNGHSK-D---------V-TDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 200 ~~~lasg~~-dg~i~iwd~-~~~~~~~~~~~~h~~-~---------V-~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
+..|+.++. ++.|.-+|. .+ ++.+..+..... . + ..+.. .+..|+.++.|+.|..+|..+|+.+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDP-GKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCT-TSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCC-ccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 345556666 788888998 77 666655542211 0 0 11222 2557888889999999999999999
Q ss_pred EEEecCC-----CeEE-EEEEcCCCcEEEEEeC------CCcEEEEEcCCCcEEEEeecCCCe-----------------
Q 010871 267 RVIYGVS-----SQLC-IRFHPVNNNFLSVGNA------NKEITVFNFSTGRIIKKLVVDSEV----------------- 317 (498)
Q Consensus 267 ~~~~~~~-----~v~~-i~~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~i----------------- 317 (498)
....... .+.+ .... ++ .+++++. ++.|..+|..+|+.+.++......
T Consensus 139 W~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 8876432 1211 1111 33 4555544 789999999999999887532211
Q ss_pred ----------------------EEEEEcCCCCEEEEEcCC----------------CeEEEEEccCCcccccccccccc-
Q 010871 318 ----------------------TSMDHDHTGQLLFCGDAQ----------------GCIYSISMESHSGALSRSHRHRT- 358 (498)
Q Consensus 318 ----------------------~~l~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~~- 358 (498)
..+++++....++.+..+ +.|..+|.++.............
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~ 295 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE 295 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc
Confidence 135666766777766542 25777777654332221110000
Q ss_pred --cCCCccceeeEEEeEeeEcCCCc---EEEEEEcCCcEEEEEccccccceeeEeEeecc-C-----------Cce----
Q 010871 359 --TGKRKCPVTTVQYRSFSLLAGGP---VLLTCTQDGNLSFFSVALEIQGYLTFRCSLKL-A-----------PRV---- 417 (498)
Q Consensus 359 --~~~~~~~i~~~~~~~~~~s~~~~---~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~-----------~~~---- 417 (498)
......++. +.. ..+|+ .++.++.+|.+.++|..++.. ........ . ..+
T Consensus 296 ~d~~~~~~p~l-~~~-----~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---~w~~~~~~~~~w~~~~d~~~g~p~~~~~ 366 (571)
T 2ad6_A 296 WDFAGVNQMVL-TDQ-----PVNGKMTPLLSHIDRNGILYTLNRENGNL---IVAEKVDPAVNVFKKVDLKTGTPVRDPE 366 (571)
T ss_dssp SCCCCCCCCEE-EEE-----EETTEEEEEEEEECTTSEEEEEETTTCCE---EEEEESSTTCCSEEEECTTTCSEEECGG
T ss_pred cccccCCCCEE-Eec-----ccCCcEEEEEEEeCCCcEEEEEECCCCCE---EeeecccCCccccccccccCCceecccc
Confidence 001112221 111 13563 577888899999999876532 11111100 0 000
Q ss_pred --------eeeE-------EEEeeeeeccCCCEEEEEe-------------------------------------CCCcE
Q 010871 418 --------HSIR-------ASFCPLLSLEKGEYIVAGS-------------------------------------EDSNV 445 (498)
Q Consensus 418 --------~~~~-------~~~~~~~~~~~~~~l~~gs-------------------------------------~dg~I 445 (498)
..+. ..|.+++++++..+|++.. .+|.|
T Consensus 367 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l 446 (571)
T 2ad6_A 367 FATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQI 446 (571)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEE
T ss_pred cCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeE
Confidence 0000 0123344445666665543 34789
Q ss_pred EEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCCCC
Q 010871 446 YFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 446 ~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~s 498 (498)
+.||+.+++ .+.++... ..+.+..+...+.+++.++.||.|+.||.+++.
T Consensus 447 ~a~D~~tG~--~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 447 RAFDLTTGK--AKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEECTTTCC--EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred EEEECCCCC--EEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 999999865 34444321 222222223346677889999999999988763
No 238
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.78 E-value=1.9e-06 Score=87.32 Aligned_cols=193 Identities=8% Similarity=0.088 Sum_probs=114.4
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCCceeEEeecCCC-----------CeEEEEEccCCCE----EEEEeCCCcEEEEECCC
Q 010871 200 SDLLAYGAS-DGTLTVCTV-SDPPKVIKLLNGHSK-----------DVTDFDFSSNNQY----IASSSMDKTVRVWELTK 262 (498)
Q Consensus 200 ~~~lasg~~-dg~i~iwd~-~~~~~~~~~~~~h~~-----------~V~~l~~s~~~~~----l~s~s~dg~v~iwd~~~ 262 (498)
+..|++++. ++.|.-+|. .+ ++.+..+..... ....+++.|.+.. |+.++.|+.|..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~t-G~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDP-GTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCT-TSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCC-CcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 345666666 788888898 77 666655543221 0123455443334 88888999999999999
Q ss_pred CcEEEEEecCC-----CeEE-EEEEcCCCcEEEEEe------CCCcEEEEEcCCCcEEEEeecCCCe-------------
Q 010871 263 GDCIRVIYGVS-----SQLC-IRFHPVNNNFLSVGN------ANKEITVFNFSTGRIIKKLVVDSEV------------- 317 (498)
Q Consensus 263 ~~~~~~~~~~~-----~v~~-i~~~~~~~~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~i------------- 317 (498)
|+.+....... .+.+ -... ++ .+++++ .+|.|+.+|.++|+.+..+......
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 99998876432 2211 1111 33 455554 3799999999999999887533221
Q ss_pred --------------------------EEEEEcCCCCEEEEEcCCC----------------eEEEEEccCCccccccccc
Q 010871 318 --------------------------TSMDHDHTGQLLFCGDAQG----------------CIYSISMESHSGALSRSHR 355 (498)
Q Consensus 318 --------------------------~~l~~~~~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~~~~ 355 (498)
..+++.+...+++.+..++ .|..+|.++.+........
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 1345667777888777653 6777777654333222111
Q ss_pred ccc---cCCCccceeeEEEeEeeEcCCC---cEEEEEEcCCcEEEEEccccc
Q 010871 356 HRT---TGKRKCPVTTVQYRSFSLLAGG---PVLLTCTQDGNLSFFSVALEI 401 (498)
Q Consensus 356 ~~~---~~~~~~~i~~~~~~~~~~s~~~---~~l~t~s~dg~i~iwd~~~~~ 401 (498)
... ......++. +... ..+| ..++.++.+|.+.++|..++.
T Consensus 298 ~~d~wd~d~~~~p~l-~d~~----~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 298 PHDEWDYAGVNVMML-SEQK----DKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp TTCSSCCCCCCCCEE-EEEE----CTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred CCccccccCCCccEE-Eecc----ccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence 000 000111121 1110 0356 567778899999999987653
No 239
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.78 E-value=3.8e-07 Score=86.42 Aligned_cols=193 Identities=12% Similarity=0.094 Sum_probs=119.7
Q ss_pred cccccEEEEEEecCCCCEEEEEeC-----CCcEEEEEcCCCCceeEEeec------CCCCeEEEEEccCCCEE-EEEe--
Q 010871 185 QCKAAVTILKFGHMSSDLLAYGAS-----DGTLTVCTVSDPPKVIKLLNG------HSKDVTDFDFSSNNQYI-ASSS-- 250 (498)
Q Consensus 185 ~h~~~V~~v~~sp~~~~~lasg~~-----dg~i~iwd~~~~~~~~~~~~~------h~~~V~~l~~s~~~~~l-~s~s-- 250 (498)
+|...+..|++++ +++++++-.. ++.|.+||+.+ ++.+..+.. +...+..+++++++..+ ++..
T Consensus 64 ~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 64 ITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCCSCEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred cceeEeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence 4556899999999 7776665443 57899999987 565555542 22456899999865444 5554
Q ss_pred -CCCcEEEEECCCCcEEEEEecCCCeE--EEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCC
Q 010871 251 -MDKTVRVWELTKGDCIRVIYGVSSQL--CIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQ 327 (498)
Q Consensus 251 -~dg~v~iwd~~~~~~~~~~~~~~~v~--~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~ 327 (498)
.++.|.+||+.+++..+.+..+.... ...+.++ +..+.+...++.+..|. ..+..++++|+++
T Consensus 142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~-g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~ 207 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVID-GVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENE 207 (343)
T ss_dssp GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEET-TEECBEECTTSCEECCC-------------CCEEEEEECTTSC
T ss_pred CCCCeEEEEECCCCCEEEEecCCCcccccccceeEC-CEEEEeccCCCceecee-------------cccceeEeccCCC
Confidence 57899999999888777665432110 1233342 34555566777765553 2467899999999
Q ss_pred EEEEEcCCC-eEEEEEccCCcc-ccccc--ccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 328 LLFCGDAQG-CIYSISMESHSG-ALSRS--HRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 328 ~l~~~~~dg-~i~i~d~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
.|+++...+ .|+.++...... ..... .......++......+ +++++|.++++...++.|.+||..
T Consensus 208 ~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi-----a~d~~G~l~va~~~~~~V~~~d~~ 277 (343)
T 2qe8_A 208 WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI-----SIDKDHNIYVGDLAHSAIGVITSA 277 (343)
T ss_dssp EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE-----EECTTCCEEEEEGGGTEEEEEETT
T ss_pred EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE-----EECCCCCEEEEccCCCeEEEEECC
Confidence 888776655 666665431110 00000 0000000111122334 444899999998899999999983
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.77 E-value=3e-06 Score=75.10 Aligned_cols=119 Identities=16% Similarity=0.219 Sum_probs=86.4
Q ss_pred eeEEeecCCCC--eEEEEEccCCCEEEEEeCCC--cEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEE
Q 010871 223 VIKLLNGHSKD--VTDFDFSSNNQYIASSSMDK--TVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEIT 298 (498)
Q Consensus 223 ~~~~~~~h~~~--V~~l~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~ 298 (498)
.+..+ .|... ...|.|+ ++.++.+.+.+| .|+++|+.+++.+..+............+.++.+.++.-.++.+.
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence 34455 35544 4789998 677777777766 899999999999999887665544333333556666666789999
Q ss_pred EEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 299 VFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 299 iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
+||..+.+.+.++.....-..++ +++..|+.+..++.|+++|..+
T Consensus 111 v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T 155 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPES 155 (262)
T ss_dssp EEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTT
T ss_pred EEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCC
Confidence 99999999999997655444454 4677777777778898887653
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=1.7e-06 Score=77.52 Aligned_cols=206 Identities=15% Similarity=0.113 Sum_probs=126.9
Q ss_pred eeEEeecCCC--CeEEEEEccCCCEEEEEeC--CCcEEEEECCCCcEEEEEecCCC--eEEEEEEcCCCcEEEEEeCCCc
Q 010871 223 VIKLLNGHSK--DVTDFDFSSNNQYIASSSM--DKTVRVWELTKGDCIRVIYGVSS--QLCIRFHPVNNNFLSVGNANKE 296 (498)
Q Consensus 223 ~~~~~~~h~~--~V~~l~~s~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~--v~~i~~~~~~~~~l~~g~~dg~ 296 (498)
.+..+. |.. ....|.|++++.+.++.+. ++.|++.|+.+++.+..+..... ...+++. ++.+.++.-.++.
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence 344443 543 3579999998755555443 57899999999999998875443 2345554 4566666667899
Q ss_pred EEEEEcCCCcEEEEeecC-CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccc---eeeEEEe
Q 010871 297 ITVFNFSTGRIIKKLVVD-SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCP---VTTVQYR 372 (498)
Q Consensus 297 i~iwd~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~ 372 (498)
+.++|..+.+.+..+... ..-.. ++++|+.++++..++.|.++|..+..... .... .....+ .+.+.+
T Consensus 88 v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~--~I~V---g~~~~p~~~~nele~- 159 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIK--KHNV---KYNGHRVIRLNELEY- 159 (266)
T ss_dssp EEEEETTTTEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEE--EEEC---EETTEECCCEEEEEE-
T ss_pred EEEEECCCCcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEE--EEEE---CCCCcccccceeEEE-
Confidence 999999999999998654 33333 45577777777788999999876533221 1111 111111 333333
Q ss_pred EeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeec-c---------CCceeeeEEEEeeeeeccCCC-EEEEEeC
Q 010871 373 SFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLK-L---------APRVHSIRASFCPLLSLEKGE-YIVAGSE 441 (498)
Q Consensus 373 ~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~-~l~~gs~ 441 (498)
. ++..++....++.|.+.|..++... ...... . .........+|.| +++ +++++..
T Consensus 160 ----~-dg~lyvn~~~~~~V~vID~~tg~V~---~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~-----~~~~lfVTgk~ 226 (266)
T 2iwa_A 160 ----I-NGEVWANIWQTDCIARISAKDGTLL---GWILLPNLRKKLIDEGFRDIDVLNGIAWDQ-----ENKRIFVTGKL 226 (266)
T ss_dssp ----E-TTEEEEEETTSSEEEEEETTTCCEE---EEEECHHHHHHHHHTTCTTCCCEEEEEEET-----TTTEEEEEETT
T ss_pred ----E-CCEEEEecCCCCeEEEEECCCCcEE---EEEECCCcccccccccccccCceEEEEEcC-----CCCEEEEECCC
Confidence 2 5655555556789999999865321 111110 0 0011223335665 665 5566667
Q ss_pred CCcEEEEECCC
Q 010871 442 DSNVYFYDLAK 452 (498)
Q Consensus 442 dg~I~iwd~~~ 452 (498)
.+.|.+.++..
T Consensus 227 ~~~v~~i~l~~ 237 (266)
T 2iwa_A 227 WPKLFEIKLHL 237 (266)
T ss_dssp CSEEEEEEEEE
T ss_pred CCeEEEEEEec
Confidence 78899888865
No 242
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.70 E-value=6.3e-07 Score=92.79 Aligned_cols=277 Identities=10% Similarity=-0.011 Sum_probs=147.8
Q ss_pred EEEEecCCCCEEEEEeCCC-----------cEEEEEcCCCC-ceeEEee-cCCCCeEEEEEccCCCEEEEEeC-CCcEEE
Q 010871 192 ILKFGHMSSDLLAYGASDG-----------TLTVCTVSDPP-KVIKLLN-GHSKDVTDFDFSSNNQYIASSSM-DKTVRV 257 (498)
Q Consensus 192 ~v~~sp~~~~~lasg~~dg-----------~i~iwd~~~~~-~~~~~~~-~h~~~V~~l~~s~~~~~l~s~s~-dg~v~i 257 (498)
.+++.+.++++++.|+.+. .+.+||..+.. ..+..+. .+.....++++..++++++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 4455554678888887643 58889988632 1222232 23334446778889999999884 457999
Q ss_pred EECCCCcEEEEEecC--CCeEEEEEEcCCCcEEEEEe-CC-----CcEEEEEcCCCcEEEEe-----ecCCCeEEEEEcC
Q 010871 258 WELTKGDCIRVIYGV--SSQLCIRFHPVNNNFLSVGN-AN-----KEITVFNFSTGRIIKKL-----VVDSEVTSMDHDH 324 (498)
Q Consensus 258 wd~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~g~-~d-----g~i~iwd~~~~~~~~~~-----~~~~~i~~l~~~~ 324 (498)
||..+++....-... ..-.+++..+ ++++++.|+ .+ ..+.+||..+++-...- .....-....+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999877544332111 1223455555 446777777 34 56999999887644321 0000000012234
Q ss_pred CCCEEEEEcCCC---------eEEEEEccCCccccccccccccc----CCCccceeeEEEeEeeEcCCCcEEEEEEcCC-
Q 010871 325 TGQLLFCGDAQG---------CIYSISMESHSGALSRSHRHRTT----GKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG- 390 (498)
Q Consensus 325 ~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg- 390 (498)
++..++.|+.+| .+..||........... .... ......-.++.+. ..++++++.|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~--~~~~~~~~~~~~~~~~av~~~----~~~~~i~v~GG~~~~ 422 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG--KRQSNRGVAPDAMCGNAVMYD----AVKGKILTFGGSPDY 422 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE--ECEETTEECCCCBTCEEEEEE----TTTTEEEEECCBSSS
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCC--ccccccccCCCCCCCceEecc----CCCCeEEEEeCCCCC
Confidence 555666665554 45666665432111000 0000 0000011112111 13677888887543
Q ss_pred ----------cEEEEEccccccceeeEeEee--ccCCceeeeEEEEeeeeeccCCCEEEEEeCC-----------CcEEE
Q 010871 391 ----------NLSFFSVALEIQGYLTFRCSL--KLAPRVHSIRASFCPLLSLEKGEYIVAGSED-----------SNVYF 447 (498)
Q Consensus 391 ----------~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----------g~I~i 447 (498)
.|.+||..... ..... .......... +...+++++++.|+.+ ..+.+
T Consensus 423 ~~~~~~~~~~~v~~yd~~~~~-----W~~~~~~~mp~~R~~~~-----~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ 492 (656)
T 1k3i_A 423 QDSDATTNAHIITLGEPGTSP-----NTVFASNGLYFARTFHT-----SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEI 492 (656)
T ss_dssp SSSBCCCCEEEEECCSTTSCC-----EEEECTTCCSSCCBSCE-----EEECTTSCEEEECCBSBCCTTCCCSBCCCCEE
T ss_pred CCCCcCCcceEEEcCCCCCCC-----eeEEccCCCCCCcccCC-----eEECCCCCEEEECCcccCcCcCCCCcccceEE
Confidence 56677765431 11111 1111111111 2222489999999854 46899
Q ss_pred EECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 010871 448 YDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDL 485 (498)
Q Consensus 448 wd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~ 485 (498)
||..+.+...+..+........+..+.|++++++.||.
T Consensus 493 ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 493 YVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred EcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 99987654444333333333345566799999999985
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.69 E-value=2.5e-05 Score=69.96 Aligned_cols=198 Identities=10% Similarity=-0.001 Sum_probs=127.7
Q ss_pred cEEEEEEecCCCCEEEEEeC--CCcEEEEEcCCCCceeEEeec-CCCCeEEEEEccCCCEEEE-EeCCCcEEEEECCCCc
Q 010871 189 AVTILKFGHMSSDLLAYGAS--DGTLTVCTVSDPPKVIKLLNG-HSKDVTDFDFSSNNQYIAS-SSMDKTVRVWELTKGD 264 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~--dg~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s-~s~dg~v~iwd~~~~~ 264 (498)
....++|++ ++.+.++.+. ++.|.++|+.+ ++.+..+.- .......+++. +..|+. .-.++.+.++|..+++
T Consensus 22 f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 22 FTQGLVYAE-NDTLFESTGLYGRSSVRQVALQT-GKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CEEEEEECS-TTEEEEEECSTTTCEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred CcccEEEeC-CCeEEEECCCCCCCEEEEEECCC-CCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence 467899998 6655555443 58999999998 777776542 21222345554 445554 4457899999999999
Q ss_pred EEEEEecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecC------CCeEEEEEcCCCCEEEEEcCCCe
Q 010871 265 CIRVIYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD------SEVTSMDHDHTGQLLFCGDAQGC 337 (498)
Q Consensus 265 ~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~------~~i~~l~~~~~~~~l~~~~~dg~ 337 (498)
.+.++... .. ...+.++++.++++- .++.|.++|..+.+.+..+... ..++.+.|. ++..++....++.
T Consensus 98 v~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 98 NIKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence 99998754 22 233555666666554 6889999999999988887532 246788887 6766666667889
Q ss_pred EEEEEccCCccccccccccc------ccCCCccceeeEEEeEeeEcCCCcEE-EEEEcCCcEEEEEccc
Q 010871 338 IYSISMESHSGALSRSHRHR------TTGKRKCPVTTVQYRSFSLLAGGPVL-LTCTQDGNLSFFSVAL 399 (498)
Q Consensus 338 i~i~d~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~s~~~~~l-~t~s~dg~i~iwd~~~ 399 (498)
|.+.|..+.+.......... .........+.+.+. ++++.| +++...+.|.+.++..
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~-----~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD-----QENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE-----TTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc-----CCCCEEEEECCCCCeEEEEEEec
Confidence 99999876543221111100 000111234556655 887655 5555778888888764
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.69 E-value=6.6e-06 Score=85.10 Aligned_cols=145 Identities=18% Similarity=0.234 Sum_probs=95.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCC----CCeEEEEEccCCCEEEEEeC------CCcEEEEECCCCcEEEEE
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHS----KDVTDFDFSSNNQYIASSSM------DKTVRVWELTKGDCIRVI 269 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~----~~V~~l~~s~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~ 269 (498)
+..|+.++.|+.|..+|..+ ++.+..+.... ..+.+--...++ .++.+.. +|.|..+|..+|+.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKT-GKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTT-CCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCC-CCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 45788888999999999998 66666655321 111110001144 4554432 589999999999999988
Q ss_pred ecC--CC------------------------------eEEEEEEcCCCcEEEEEeCCC-------------------cEE
Q 010871 270 YGV--SS------------------------------QLCIRFHPVNNNFLSVGNANK-------------------EIT 298 (498)
Q Consensus 270 ~~~--~~------------------------------v~~i~~~~~~~~~l~~g~~dg-------------------~i~ 298 (498)
... .. ...+++.+.. .+++.+..++ .|.
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 632 10 0135777744 5666776655 499
Q ss_pred EEEcCCCcEEEEeecC----------CCeEEEEEcCCCC---EEEEEcCCCeEEEEEccCCc
Q 010871 299 VFNFSTGRIIKKLVVD----------SEVTSMDHDHTGQ---LLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 299 iwd~~~~~~~~~~~~~----------~~i~~l~~~~~~~---~l~~~~~dg~i~i~d~~~~~ 347 (498)
.+|..+|+.+..++.. .++....+..+|+ .+++++.+|.++++|..+.+
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 9999999999888532 2333333334564 68899999999999876544
No 245
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.68 E-value=1.3e-05 Score=70.33 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=87.2
Q ss_pred ceeEEeecCCC--CeEEEEEccCCCEEEEEeCCC--cEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcE
Q 010871 222 KVIKLLNGHSK--DVTDFDFSSNNQYIASSSMDK--TVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEI 297 (498)
Q Consensus 222 ~~~~~~~~h~~--~V~~l~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i 297 (498)
+.+..+ .|.. -...|.|+. +.++.+.+.+| .|+.+|+.+++.+..+..............++.+....-.++.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence 344555 4653 466899986 55666766654 89999999999999988766554333333355666666788999
Q ss_pred EEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 298 TVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 298 ~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
.+||..+.+.+.++.....-..++ +++..|+++..++.|+++|..+
T Consensus 88 ~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t 133 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDT 133 (243)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTT
T ss_pred EEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCC
Confidence 999999999999997665555555 4567777777788999988654
No 246
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.67 E-value=8.2e-07 Score=83.32 Aligned_cols=262 Identities=13% Similarity=0.122 Sum_probs=150.7
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIR 267 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 267 (498)
..+.++...+ ++ .|..++.+ |..+|. + ++....+..+........+. +..|+.++.++.|..+|.. ++...
T Consensus 60 ~~~~~~~~~~-~g-~l~v~t~~--l~~~d~-~-g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~ 130 (330)
T 3hxj_A 60 IIECRPSIGK-DG-TIYFGSDK--VYAINP-D-GTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW 130 (330)
T ss_dssp EEEECCEETT-TT-EECCSSCE--EEEECC-C-GGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE
T ss_pred CcccceEEec-CC-cEEEecCc--EEEECC-C-CcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE
Confidence 3456666655 44 45555555 888886 3 33333332222222233333 4477888889999999988 87777
Q ss_pred EEecCCC-eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec-CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 268 VIYGVSS-QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 268 ~~~~~~~-v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
....... +.++...+++ .+.+++.++.|..+|.. ++.+..+.. ...+.++...+++.+++ ++ +.|+.+| ..
T Consensus 131 ~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~ 203 (330)
T 3hxj_A 131 RFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PD 203 (330)
T ss_dssp EEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TT
T ss_pred EEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CC
Confidence 7665543 3344454433 36667788999999998 887776653 34566777777777544 44 7788887 32
Q ss_pred CcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEe
Q 010871 346 HSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFC 425 (498)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (498)
.. ..... ......+.++... +++ .|..++.++.|..+|.... ...... ...... .
T Consensus 204 g~--~~~~~-----~~~~~~~~~~~~~-----~~g-~l~v~t~~~gl~~~~~~g~----~~~~~~--~~~~~~------~ 258 (330)
T 3hxj_A 204 GT--EKWNF-----YAGYWTVTRPAIS-----EDG-TIYVTSLDGHLYAINPDGT----EKWRFK--TGKRIE------S 258 (330)
T ss_dssp SC--EEEEE-----CCSSCCCSCCEEC-----TTS-CEEEEETTTEEEEECTTSC----EEEEEE--CSSCCC------S
T ss_pred Cc--EEEEE-----ccCCcceeceEEC-----CCC-eEEEEcCCCeEEEECCCCC----EeEEee--CCCCcc------c
Confidence 22 11111 1112234444432 555 4666777888888874321 111111 111110 0
Q ss_pred eeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 426 PLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 426 ~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.+.. ..+..|..++.+|.|..+|. +++ .+..+......+.++...+++.+ ..++.+|.+++...+
T Consensus 259 ~~~~-~~~g~l~v~t~~ggl~~~d~-~g~--~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 259 SPVI-GNTDTIYFGSYDGHLYAINP-DGT--EKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYALFNL 323 (330)
T ss_dssp CCEE-CTTSCEEEECTTCEEEEECT-TSC--EEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEEEC-
T ss_pred cceE-cCCCeEEEecCCCCEEEECC-CCc--EEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEEecc
Confidence 1111 12456777888888999996 433 34444444556777888777764 558889999987755
No 247
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.67 E-value=0.0001 Score=68.26 Aligned_cols=242 Identities=11% Similarity=0.018 Sum_probs=137.5
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCC--CcEEEE
Q 010871 223 VIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNAN--KEITVF 300 (498)
Q Consensus 223 ~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d--g~i~iw 300 (498)
.+..+... .....++|+++++++++-..++.|..||... .....+.....+..+++.+++. ++++.... ..|..+
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCc-EEEEeccCCcceEEEE
Confidence 34444322 4567899999998777776788999999775 4444455555678899998654 55544332 247777
Q ss_pred EcCCCcEEEEeec--CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccc-c--ccCCCccceeeEEEeEee
Q 010871 301 NFSTGRIIKKLVV--DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRH-R--TTGKRKCPVTTVQYRSFS 375 (498)
Q Consensus 301 d~~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~--~~~~~~~~i~~~~~~~~~ 375 (498)
|..+++....... ......++..+.+..+++-..++.|+++|.............. . ...........+
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi------ 174 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL------ 174 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE------
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc------
Confidence 8778776443332 2334556666655555555568899999875422111100000 0 000111112222
Q ss_pred EcCCCcEEEEE-EcCCcEEEEEcccc-ccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCC
Q 010871 376 LLAGGPVLLTC-TQDGNLSFFSVALE-IQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 376 ~s~~~~~l~t~-s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
++++..|+.+ +..+.|..|++... ...... ..... ... ..+++.++|+++++....+.|.+++.. +
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~--~~~~~-~~P-------~gi~vd~dG~l~va~~~~~~V~~~~~~-G 242 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPE--IFVEQ-TNI-------DDFAFDVEGNLYGATHIYNSVVRIAPD-R 242 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCBCCCE--EEEES-CCC-------SSEEEBTTCCEEEECBTTCCEEEECTT-C
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccE--EEecc-CCC-------CCeEECCCCCEEEEeCCCCeEEEECCC-C
Confidence 2677665554 45678999998641 110000 00000 111 112333489888887778899999975 3
Q ss_pred CccceeeecCCCCCeEEEEEc---CCCCEEEEEeC
Q 010871 454 KHSCVNKLQGHRFPVVAVAWN---HGENLLASSDL 485 (498)
Q Consensus 454 ~~~~~~~~~~h~~~V~~l~~s---p~~~~l~s~~~ 485 (498)
+...+..+......+++++|. |++..|+.++.
T Consensus 243 ~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 243 STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 322222333334568999998 88777766554
No 248
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.66 E-value=6.9e-05 Score=79.42 Aligned_cols=286 Identities=9% Similarity=0.093 Sum_probs=161.4
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeec-------CCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNG-------HSKDVTDFDFSSNNQYIASSSMDKTVRVWE 259 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~-------h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd 259 (498)
...|.++...+ ++.+ ..|+.++-|.+||..+ .+....... ....|.++...++|.+. .|+.+ -|.+||
T Consensus 214 ~~~i~~i~~d~-~g~l-wigt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~ 288 (795)
T 4a2l_A 214 TKQIQAILQQS-PTRI-WVATEGAGLFLINPKT-KEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYH 288 (795)
T ss_dssp CCCEEEEEEEE-TTEE-EEEEBSSCEEEEETTT-TEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEE
T ss_pred CCeeEEEEEcC-CCCE-EEEECCCCeEEEeCCC-CeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEc
Confidence 45688888877 5554 4455444488999876 333322221 13569999998888644 45555 489999
Q ss_pred CCCCcEEEEEec--------CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-------cCCCeEEEEEcC
Q 010871 260 LTKGDCIRVIYG--------VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-------VDSEVTSMDHDH 324 (498)
Q Consensus 260 ~~~~~~~~~~~~--------~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------~~~~i~~l~~~~ 324 (498)
..+++....... ...|.++...+++ .|.+|+.++-|..|+..++....... ....|.++..++
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~ 366 (795)
T 4a2l_A 289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK 366 (795)
T ss_dssp TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence 887765433211 1346677776643 45567788889999987655332211 235699999988
Q ss_pred CCCEEEEEcCCCeEEEEEccCCccccccccccccc-CCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccc
Q 010871 325 TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTT-GKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQG 403 (498)
Q Consensus 325 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~ 403 (498)
+|. |.+|+.++-|..|+.....-........... ......|.++... .++..|..|+.++-|.+||..++...
T Consensus 367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d-----~~g~~lWigt~~~Gl~~~d~~~~~~~ 440 (795)
T 4a2l_A 367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD-----EKKSLVYIGTHAGGLSILHRNSGQVE 440 (795)
T ss_dssp TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE-----TTTTEEEEEETTTEEEEEETTTCCEE
T ss_pred CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc-----CCCCEEEEEeCcCceeEEeCCCCcEE
Confidence 887 4457777678888765332111100000000 0112446665543 67775777888778999997654211
Q ss_pred eeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeee----cCCCCCeEEEEEcCCCCE
Q 010871 404 YLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL----QGHRFPVVAVAWNHGENL 479 (498)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~ 479 (498)
........... ..+..+...++|.+.+. +.+ -|.+||..+++....... .-....|.++...++|.+
T Consensus 441 -----~~~~~~~~l~~--~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l 511 (795)
T 4a2l_A 441 -----NFNQRNSQLVN--ENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL 511 (795)
T ss_dssp -----EECTTTSCCSC--SCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred -----EeecCCCCcCC--CeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence 11000000000 01111222235665544 444 489999887542221111 112357999999998887
Q ss_pred EEEEeCCCeEEEeecCC
Q 010871 480 LASSDLYGIVIVWKRAK 496 (498)
Q Consensus 480 l~s~~~Dg~i~iW~~~~ 496 (498)
.+... +-|..|+..+
T Consensus 512 Wigt~--~Gl~~~~~~~ 526 (795)
T 4a2l_A 512 WIGGE--EGLSVFKQEG 526 (795)
T ss_dssp EEEES--SCEEEEEEET
T ss_pred EEEeC--CceEEEeCCC
Confidence 66544 4577777543
No 249
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.65 E-value=5.7e-06 Score=73.27 Aligned_cols=118 Identities=8% Similarity=0.059 Sum_probs=86.2
Q ss_pred eeEEeecCCCC--eEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEE
Q 010871 223 VIKLLNGHSKD--VTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVF 300 (498)
Q Consensus 223 ~~~~~~~h~~~--V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iw 300 (498)
.+..+ .|... ...|.|+ ++.+.++.+.+|.|+++|+.+++.+..+ ...........+.++.+.++.-.++.+.+|
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTW 121 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEE
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEE
Confidence 34444 35433 4788887 4667778888899999999999988887 544443322333456677777789999999
Q ss_pred EcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 301 NFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 301 d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
|..+.+.+.++.....-..++ ++++.|+++..++.|+++|..+
T Consensus 122 D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T 164 (268)
T 3nok_A 122 SGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDG 164 (268)
T ss_dssp ETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTT
T ss_pred ECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCC
Confidence 999999999997655445555 4678888887788999988653
No 250
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.64 E-value=0.00018 Score=76.24 Aligned_cols=286 Identities=12% Similarity=0.090 Sum_probs=160.5
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEe-ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLL-NGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
|.++...+ ++.+ ..|..++.|..|+..+ ....... ..+...|.++...+++.+ ..++.++-|.+||..+++....
T Consensus 175 i~~i~~d~-~g~l-wigt~~~Gl~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~l-wigt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQ-GDQI-YIGTSTDGLYTYSITQ-KTFEKVIPILGTKQIQAILQQSPTRI-WVATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEE-TTEE-EEEESSSCEEEEETTT-CCEEECC----CCCEEEEEEEETTEE-EEEEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECC-CCCE-EEEECCCCEEEEeCCC-CeEEEecCCCCCCeeEEEEEcCCCCE-EEEECCCCeEEEeCCCCeEEEe
Confidence 88888877 5554 4466655588999876 3332211 123567899988887754 4455444489999887665433
Q ss_pred Eec--------CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee--------cCCCeEEEEEcCCCCEEEEE
Q 010871 269 IYG--------VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV--------VDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 269 ~~~--------~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------~~~~i~~l~~~~~~~~l~~~ 332 (498)
... ...+.++...+++ . |..|+.+ -|.+||..+++...... ....|.++..+++|. |.+|
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWig 326 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLG 326 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEE
T ss_pred ecCCCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEE
Confidence 221 1346677776643 3 4445555 58999988776544321 235699999999887 4556
Q ss_pred cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeec
Q 010871 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLK 412 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~ 412 (498)
+.++-|..|+.....-........ ........|.++... .+|. |..|+.++-|..|+..+..-..........
T Consensus 327 t~~~Gl~~~~~~~~~~~~~~~~~~-~~~l~~~~V~~i~~d-----~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~ 399 (795)
T 4a2l_A 327 TYFGGLNYYHPIRNRFKNIRNIPY-KNSLSDNVVSCIVED-----KDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDES 399 (795)
T ss_dssp ESSSCEEEECGGGGSSEEECCCTT-SSSCSCSSEEEEEEC-----TTSC-EEEEESSSCEEEECTTTCCEEEECCC----
T ss_pred ECCCCeEEeCCCcccceEEcCCCC-CCCCCCCeeEEEEEC-----CCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCc
Confidence 666778888754322111110000 001123346665543 5555 566788878999987643111100000000
Q ss_pred c-CCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec--CCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 010871 413 L-APRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ--GHRFPVVAVAWNHGENLLASSDLYGIV 489 (498)
Q Consensus 413 ~-~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~s~~~Dg~i 489 (498)
. .-.... +..++..++|++|.+|+.++-|.+||..+++........ .+...|.++...++|.+.+.. .+ .|
T Consensus 400 ~~~l~~~~----v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl 473 (795)
T 4a2l_A 400 ARGIGSNN----IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-AL 473 (795)
T ss_dssp --CCSCSC----EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CE
T ss_pred ccCCCCcc----EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ce
Confidence 0 000011 111222236775777787777999999875522111100 134579999998888866654 34 47
Q ss_pred EEeecCC
Q 010871 490 IVWKRAK 496 (498)
Q Consensus 490 ~iW~~~~ 496 (498)
.+|+.++
T Consensus 474 ~~~~~~~ 480 (795)
T 4a2l_A 474 VRFNPEQ 480 (795)
T ss_dssp EEEETTT
T ss_pred eEEeCCC
Confidence 7787654
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.63 E-value=3.7e-05 Score=71.83 Aligned_cols=237 Identities=10% Similarity=-0.020 Sum_probs=134.9
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeec--------------------CCCCeEEEEEcc-CCCEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNG--------------------HSKDVTDFDFSS-NNQYIA 247 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~--------------------h~~~V~~l~~s~-~~~~l~ 247 (498)
...+++|++ ++.++.++..++.|..|+..+ ... ..+.. ....+.++++.+ ++ .|+
T Consensus 20 ~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~-~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~ 95 (322)
T 2fp8_A 20 APNSFTFDS-TNKGFYTSVQDGRVIKYEGPN-SGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLY 95 (322)
T ss_dssp CCCCEECCT-TCSSEEEECTTSEEEEECCTT-TCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEE
T ss_pred CceEEEEcC-CCCEEEEEcCCCeEEEECCCC-Cce-EEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEE
Confidence 346788888 788788888899999998875 322 22221 113578999997 56 455
Q ss_pred EEeCCCcEEEEECCCCcEEEEEec------CCCeEEEEEEc-CCCcEEEEEeC-----------------CCcEEEEEcC
Q 010871 248 SSSMDKTVRVWELTKGDCIRVIYG------VSSQLCIRFHP-VNNNFLSVGNA-----------------NKEITVFNFS 303 (498)
Q Consensus 248 s~s~dg~v~iwd~~~~~~~~~~~~------~~~v~~i~~~~-~~~~~l~~g~~-----------------dg~i~iwd~~ 303 (498)
.+...+.|..+|..++.. ..+.. ......+++.+ ++ ++.++... ++.|..||..
T Consensus 96 v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 555555588888775542 22211 12456788888 55 45544322 3678889987
Q ss_pred CCcEEEEeecCCCeEEEEEcCCCCEEEEE-cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcE
Q 010871 304 TGRIIKKLVVDSEVTSMDHDHTGQLLFCG-DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPV 382 (498)
Q Consensus 304 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~ 382 (498)
+++.......-.....++++++++.|+++ ...+.|+.|++........... ..... ... ++++++|++
T Consensus 174 ~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~-----~~~~g-P~g-----i~~d~~G~l 242 (322)
T 2fp8_A 174 TKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL-----VKIPN-PGN-----IKRNADGHF 242 (322)
T ss_dssp TTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE-----EECSS-EEE-----EEECTTSCE
T ss_pred CCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE-----EeCCC-CCC-----eEECCCCCE
Confidence 77654333333456679999999866555 5668999998864211000000 00011 233 344588987
Q ss_pred EEEEEc----------CCcEEEEEccccccceeeEeEeeccCCceeeeE-EEEeeeeeccCCCEEEEEeCCCcEEEEECC
Q 010871 383 LLTCTQ----------DGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR-ASFCPLLSLEKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 383 l~t~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~ 451 (498)
+++... .+.|..+|.... ................. +.+ .++.++++...++.|.++++.
T Consensus 243 ~va~~~~~~~~~~~~~~~~v~~~d~~G~----~~~~~~~~~g~~~~~~~~~~~------~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 243 WVSSSEELDGNMHGRVDPKGIKFDEFGN----ILEVIPLPPPFAGEHFEQIQE------HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEEEEETTSSTTSCEEEEEEEECTTSC----EEEEEECCTTTTTSCCCEEEE------ETTEEEEECSSCSEEEEEEC-
T ss_pred EEEecCcccccccCCCccEEEEECCCCC----EEEEEECCCCCccccceEEEE------eCCEEEEeecCCCceEEEecc
Confidence 766654 356777775421 11111111100011111 111 266666666677889999886
Q ss_pred C
Q 010871 452 K 452 (498)
Q Consensus 452 ~ 452 (498)
.
T Consensus 313 ~ 313 (322)
T 2fp8_A 313 K 313 (322)
T ss_dssp -
T ss_pred c
Confidence 4
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.63 E-value=2.9e-05 Score=78.68 Aligned_cols=109 Identities=13% Similarity=0.011 Sum_probs=68.0
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceeEEeecCCCC---------eEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Q 010871 201 DLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKD---------VTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYG 271 (498)
Q Consensus 201 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~---------V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 271 (498)
..|+.++.++.|.-+|..+ ++.+..+...... -..+++ .+..|+.++.|+.|..+|..+|+.+.....
T Consensus 69 g~vyv~~~~~~v~AlD~~t-G~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKT-GKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TEEEEEETTTEEEEEESSS-CCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEECCC-CcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 3455555534488888887 6666555433211 011222 245788888999999999999999988765
Q ss_pred CC-----CeE-EEEEEcC---CCcEEEEEe------CCCcEEEEEcCCCcEEEEee
Q 010871 272 VS-----SQL-CIRFHPV---NNNFLSVGN------ANKEITVFNFSTGRIIKKLV 312 (498)
Q Consensus 272 ~~-----~v~-~i~~~~~---~~~~l~~g~------~dg~i~iwd~~~~~~~~~~~ 312 (498)
.. .+. ....... +...+++++ .++.|..+|..+|+.+....
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence 42 111 1111111 122566664 37899999999999988764
No 253
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.62 E-value=5.5e-07 Score=89.09 Aligned_cols=155 Identities=12% Similarity=0.087 Sum_probs=120.9
Q ss_pred ccEEEEEE-e-cCCCCEEEEEe------------------CCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEE
Q 010871 188 AAVTILKF-G-HMSSDLLAYGA------------------SDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA 247 (498)
Q Consensus 188 ~~V~~v~~-s-p~~~~~lasg~------------------~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~ 247 (498)
..+..+++ + | ++.++++++ .++.+.+.|..+ .+...++.--. .-..++++|+|++++
T Consensus 134 ~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t-~~v~~qI~Vgg-~pd~~~~spdGk~~~ 210 (595)
T 1fwx_A 134 KGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK-WEVAWQVLVSG-NLDNCDADYEGKWAF 210 (595)
T ss_dssp CSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT-TEEEEEEEESS-CCCCEEECSSSSEEE
T ss_pred CCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEEEECCC-CeEEEEEEeCC-CccceEECCCCCEEE
Confidence 35778887 4 7 788888774 346799999998 66666665322 346688999999999
Q ss_pred EEeCCC--------------------------------------cEEEEECCC--CcE-EEEEecCCCeEEEEEEcCCCc
Q 010871 248 SSSMDK--------------------------------------TVRVWELTK--GDC-IRVIYGVSSQLCIRFHPVNNN 286 (498)
Q Consensus 248 s~s~dg--------------------------------------~v~iwd~~~--~~~-~~~~~~~~~v~~i~~~~~~~~ 286 (498)
+.+.+. .|.+.|..+ ++. +..+.......++.++|++..
T Consensus 211 vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~ 290 (595)
T 1fwx_A 211 STSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKH 290 (595)
T ss_dssp EEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSE
T ss_pred EEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCE
Confidence 888553 477888887 555 677776677789999998888
Q ss_pred EEEEEeCCCcEEEEEcCCCc------------EEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 287 FLSVGNANKEITVFNFSTGR------------IIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 287 ~l~~g~~dg~i~iwd~~~~~------------~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
+++++..+.+|.++|+.+.+ .+...........++|+++|..+++...++.|..|+++.
T Consensus 291 v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 291 LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 88888889999999998763 556666778899999999996566778899999999875
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.62 E-value=1.3e-05 Score=81.06 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=91.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCC--C--CeEE-EEEccCCCEEEEEeC------CCcEEEEECCCCcEEEE
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHS--K--DVTD-FDFSSNNQYIASSSM------DKTVRVWELTKGDCIRV 268 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~--~--~V~~-l~~s~~~~~l~s~s~------dg~v~iwd~~~~~~~~~ 268 (498)
+..|+.++.|+.|..+|..+ ++.+....... . .+.+ ... .++ .++.++. ++.|..+|..+|+.+..
T Consensus 115 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKT-GKINWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEEEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 45788888899999999988 66655543211 0 1211 111 144 5555554 78999999999999988
Q ss_pred EecCCCe---------------------------------------EEEEEEcCCCcEEEEEeCC---------------
Q 010871 269 IYGVSSQ---------------------------------------LCIRFHPVNNNFLSVGNAN--------------- 294 (498)
Q Consensus 269 ~~~~~~v---------------------------------------~~i~~~~~~~~~l~~g~~d--------------- 294 (498)
+...... ..+++.+.. ..++.+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCCCcee
Confidence 8754321 124566644 345445422
Q ss_pred -CcEEEEEcCCCcEEEEeecC----------CCeEEEEEcCCCC---EEEEEcCCCeEEEEEccCCc
Q 010871 295 -KEITVFNFSTGRIIKKLVVD----------SEVTSMDHDHTGQ---LLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 295 -g~i~iwd~~~~~~~~~~~~~----------~~i~~l~~~~~~~---~l~~~~~dg~i~i~d~~~~~ 347 (498)
+.|..+|..+|+.+..++.. ....-+....+|+ .++.++.+|.++++|..+.+
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 35999999999999888522 1111222224663 57788999999999876543
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.59 E-value=6.4e-05 Score=76.14 Aligned_cols=141 Identities=13% Similarity=0.198 Sum_probs=91.2
Q ss_pred EEEEeCCCcEEEEEcCCCCceeEEeecCC----CCeEE-EEEccCCCEEEEEe------CCCcEEEEECCCCcEEEEEec
Q 010871 203 LAYGASDGTLTVCTVSDPPKVIKLLNGHS----KDVTD-FDFSSNNQYIASSS------MDKTVRVWELTKGDCIRVIYG 271 (498)
Q Consensus 203 lasg~~dg~i~iwd~~~~~~~~~~~~~h~----~~V~~-l~~s~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~ 271 (498)
|+.++.|+.|..+|..+ ++.+....... ..+.+ ... .++ .++.++ .+|.|..+|..+|+.+..+..
T Consensus 124 V~v~t~dg~l~AlDa~T-G~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAET-GETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCC-CCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 77888899999999988 66655543211 01221 111 144 455544 489999999999999988875
Q ss_pred CCCe---------------------------------------EEEEEEcCCCcEEEEEeCC----------------Cc
Q 010871 272 VSSQ---------------------------------------LCIRFHPVNNNFLSVGNAN----------------KE 296 (498)
Q Consensus 272 ~~~v---------------------------------------~~i~~~~~~~~~l~~g~~d----------------g~ 296 (498)
.... ...++.+.. .+++.+..+ +.
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~s 279 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMT 279 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccce
Confidence 4321 134555544 456656544 47
Q ss_pred EEEEEcCCCcEEEEeecCC----------CeEEEEEc-CCC---CEEEEEcCCCeEEEEEccCCc
Q 010871 297 ITVFNFSTGRIIKKLVVDS----------EVTSMDHD-HTG---QLLFCGDAQGCIYSISMESHS 347 (498)
Q Consensus 297 i~iwd~~~~~~~~~~~~~~----------~i~~l~~~-~~~---~~l~~~~~dg~i~i~d~~~~~ 347 (498)
|..+|..+|+.+..++... ...-+... .+| ..++.++.+|.++++|..+.+
T Consensus 280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred EEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence 9999999999998885321 11112222 467 467788999999999876543
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.56 E-value=4.2e-05 Score=71.49 Aligned_cols=236 Identities=15% Similarity=0.095 Sum_probs=136.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEec---------------------CCCeEEEEEEcCCCcEEEE
Q 010871 232 KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYG---------------------VSSQLCIRFHPVNNNFLSV 290 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~---------------------~~~v~~i~~~~~~~~~l~~ 290 (498)
....+++|.+++++++++..++.|..|+..+++.. .+.. ...+..+++.++++++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v- 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI- 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-
Confidence 34577889999987888888999999998765533 2221 124678888874444444
Q ss_pred EeCCCcEEEEEcCCCcEEEEee-----cCCCeEEEEEcC-CCCEEEEEcC-----------------CCeEEEEEccCCc
Q 010871 291 GNANKEITVFNFSTGRIIKKLV-----VDSEVTSMDHDH-TGQLLFCGDA-----------------QGCIYSISMESHS 347 (498)
Q Consensus 291 g~~dg~i~iwd~~~~~~~~~~~-----~~~~i~~l~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~~ 347 (498)
+...+.|..+|..+++...... .......+++.+ +|+++++-.. +|.|+.||.....
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 4445558888877654322111 123578899999 8886665432 3667777754322
Q ss_pred ccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEE-EcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEee
Q 010871 348 GALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC-TQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426 (498)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (498)
..... ....... .++++++++.|+++ +..+.|.+|++.....+...... .... .-.
T Consensus 177 ~~~~~--------~~~~~p~-----gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~--~~~g---P~g----- 233 (322)
T 2fp8_A 177 TTLLL--------KELHVPG-----GAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV--KIPN---PGN----- 233 (322)
T ss_dssp EEEEE--------EEESCCC-----EEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE--ECSS---EEE-----
T ss_pred EEEec--------cCCccCc-----ceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE--eCCC---CCC-----
Confidence 11100 0001112 24455999866655 55688999998743211111111 1111 111
Q ss_pred eeeccCCCEEEEEeC----------CCcEEEEECCCCCccceeeecCC----CCCeEEEEEcCCCCEEEEEeCCCeEEEe
Q 010871 427 LLSLEKGEYIVAGSE----------DSNVYFYDLAKPKHSCVNKLQGH----RFPVVAVAWNHGENLLASSDLYGIVIVW 492 (498)
Q Consensus 427 ~~~~~~~~~l~~gs~----------dg~I~iwd~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~l~s~~~Dg~i~iW 492 (498)
++..++|++.++... .+.|..+|.. ++ .+..+... -..++++++ .++.+.++....+.|.++
T Consensus 234 i~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~--~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 234 IKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GN--ILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp EEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SC--EEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred eEECCCCCEEEEecCcccccccCCCccEEEEECCC-CC--EEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEE
Confidence 233348887776654 4668888865 22 34444332 234677777 356666666677899999
Q ss_pred ecCC
Q 010871 493 KRAK 496 (498)
Q Consensus 493 ~~~~ 496 (498)
++..
T Consensus 310 ~~~~ 313 (322)
T 2fp8_A 310 VYDK 313 (322)
T ss_dssp EC--
T ss_pred eccc
Confidence 8764
No 257
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.55 E-value=7.5e-07 Score=83.58 Aligned_cols=251 Identities=10% Similarity=0.054 Sum_probs=141.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeE-EE
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQL-CI 278 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~-~i 278 (498)
+..|..++.++.|..|| .+ ++....+..+...+.++...+++ .|+.++.+ |..+|. +++.+..+....... ..
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~-g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~ 103 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TD-GSVKWFFKSGEIIECRPSIGKDG-TIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF 103 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TT-SCEEESSCGGGEEEECCEETTTT-EECCSSCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred CCeEEEEcCCCEEEEEC-CC-CcEEEEEecCCCcccceEEecCC-cEEEecCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence 34566777888899999 65 55555544444556777777677 45555554 888885 555433332222211 22
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec-CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccccccccc
Q 010871 279 RFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV-DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHR 357 (498)
Q Consensus 279 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 357 (498)
... ...+.+++.++.|..+|.. ++....... ...+.++...+++. +++++.++.|+.+|.. ...... ..
T Consensus 104 ~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~--~~-- 173 (330)
T 3hxj_A 104 TIF---EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR--FK-- 173 (330)
T ss_dssp EEE---TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE--EE--
T ss_pred eEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE--Ee--
Confidence 222 3456778788999999998 777766643 33456667777776 6667788999999875 221111 11
Q ss_pred ccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEE
Q 010871 358 TTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIV 437 (498)
Q Consensus 358 ~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 437 (498)
.....+.++.. ..++.++ .++ +.|..+| ..+. ........ ... ...+...++| .|.
T Consensus 174 ---~~~~~~~~~~~-----d~~g~l~-v~t--~~l~~~d-~~g~---~~~~~~~~-~~~-------~~~~~~~~~g-~l~ 229 (330)
T 3hxj_A 174 ---TNDAITSAASI-----GKDGTIY-FGS--DKVYAIN-PDGT---EKWNFYAG-YWT-------VTRPAISEDG-TIY 229 (330)
T ss_dssp ---CSSCCCSCCEE-----CTTCCEE-EES--SSEEEEC-TTSC---EEEEECCS-SCC-------CSCCEECTTS-CEE
T ss_pred ---cCCCceeeeEE-----cCCCEEE-EEe--CEEEEEC-CCCc---EEEEEccC-Ccc-------eeceEECCCC-eEE
Confidence 11122333332 2566644 444 7888888 4321 11111110 111 1112222344 566
Q ss_pred EEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 438 AGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 438 ~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
+++.++.|..+|... . .+..+......+.++.+.+++. |..++.+|.|..++.
T Consensus 230 v~t~~~gl~~~~~~g-~--~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 230 VTSLDGHLYAINPDG-T--EKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp EEETTTEEEEECTTS-C--EEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred EEcCCCeEEEECCCC-C--EeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 677788888887532 2 3444444444445566665564 556777888888885
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.53 E-value=0.00012 Score=74.26 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=91.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeecCCC----CeE-EEEEcc---CCC-EEEEEe------CCCcEEEEECCCCc
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSK----DVT-DFDFSS---NNQ-YIASSS------MDKTVRVWELTKGD 264 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~----~V~-~l~~s~---~~~-~l~s~s------~dg~v~iwd~~~~~ 264 (498)
+..|+.++.|+.|.-+|..+ ++.+........ .+. ...... +++ .++.++ .+|.|..+|..+|+
T Consensus 117 ~~~v~~~t~dg~l~AlD~~T-G~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNT-GKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TTEEEEEETTTEEEEEESSS-CCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 45777888899999999988 666655443210 111 111111 233 555554 37899999999999
Q ss_pred EEEEEecCCCe------------------------------------------EEEEEEcCCCcEEEEEeC---------
Q 010871 265 CIRVIYGVSSQ------------------------------------------LCIRFHPVNNNFLSVGNA--------- 293 (498)
Q Consensus 265 ~~~~~~~~~~v------------------------------------------~~i~~~~~~~~~l~~g~~--------- 293 (498)
.+......... ...++.|.. .+++.+..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBSSSCGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCCcccCcc
Confidence 98876542110 123555543 45554442
Q ss_pred -----------C----CcEEEEEcCCCcEEEEeecC----------CCeEEEEEc-CCCC---EEEEEcCCCeEEEEEcc
Q 010871 294 -----------N----KEITVFNFSTGRIIKKLVVD----------SEVTSMDHD-HTGQ---LLFCGDAQGCIYSISME 344 (498)
Q Consensus 294 -----------d----g~i~iwd~~~~~~~~~~~~~----------~~i~~l~~~-~~~~---~l~~~~~dg~i~i~d~~ 344 (498)
| +.|..+|..+|+.+..++.. ....-+... .+|+ .++.++.+|.++++|..
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 58999999999999888531 111112222 4664 78889999999999876
Q ss_pred CCc
Q 010871 345 SHS 347 (498)
Q Consensus 345 ~~~ 347 (498)
+.+
T Consensus 355 tG~ 357 (582)
T 1flg_A 355 NGK 357 (582)
T ss_dssp TCC
T ss_pred CCC
Confidence 543
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.51 E-value=9.4e-05 Score=65.50 Aligned_cols=188 Identities=8% Similarity=0.031 Sum_probs=119.9
Q ss_pred cEEEEEEecCCCCEEEEEeCCC--cEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCcE
Q 010871 189 AVTILKFGHMSSDLLAYGASDG--TLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS-MDKTVRVWELTKGDC 265 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s-~dg~v~iwd~~~~~~ 265 (498)
-...+.|+ ++.+..+.+.+| .|+++|+.+ ++.+..+.-. .........+++..|+... .++.+.++|..+.+.
T Consensus 44 ftqGL~~~--~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 44 FTEGFFYR--NGYFYESTGLNGRSSIRKVDIES-GKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEEE--TTEEEEEEEETTEEEEEEECTTT-CCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred ccceEEEE--CCEEEEECCCCCCceEEEEECCC-CcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence 35788887 456777777766 899999998 7777766543 2333333333455555554 578999999999999
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeec---C---CCeEEEEEcCCCCEEEEEcCCCeEE
Q 010871 266 IRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVV---D---SEVTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 266 ~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~---~~i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
+.++.....-..++ +++..++++ ..++.|.++|..+.+.+..+.. . ..++.+.|. +|..++..-.+..|.
T Consensus 120 ~~ti~~~~eG~glt--~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 120 VRSFNYDGEGWGLT--HNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp EEEEECSSCCCCEE--ECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEECCCCceEEe--cCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEE
Confidence 99998654333344 445555544 4578899999999999888753 2 334567776 677666666788899
Q ss_pred EEEccCCcccccccccccc-----cCCCccceeeEEEeEeeEcCCCcEEEEEEcC
Q 010871 340 SISMESHSGALSRSHRHRT-----TGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD 389 (498)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d 389 (498)
+.|..+............. ........+.+++. |+++.|++.+..
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~d-----p~~~~lfVTGK~ 245 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWD-----KEHHRLFVTGKL 245 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEE-----TTTTEEEEEETT
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEc-----CCCCEEEEECCC
Confidence 9887654432221111000 01112234555555 888877777653
No 260
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.51 E-value=0.00014 Score=65.75 Aligned_cols=196 Identities=10% Similarity=0.020 Sum_probs=120.6
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCcEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA-SSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~ 266 (498)
..+..++|++.++.++++-..++.|.+++... ......+.........+++.+++..|+ +-...+.|.++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 35789999984455555556678999999875 333333333335678999999765555 4455678999998754332
Q ss_pred EEEecC-CCeEEEEEEcCCCcEEEEEeC--CCcEEEEEcCCCcEEEEe--ecCCCeEEEEEcCCCCEEE-EEcCCCeEEE
Q 010871 267 RVIYGV-SSQLCIRFHPVNNNFLSVGNA--NKEITVFNFSTGRIIKKL--VVDSEVTSMDHDHTGQLLF-CGDAQGCIYS 340 (498)
Q Consensus 267 ~~~~~~-~~v~~i~~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~-~~~~dg~i~i 340 (498)
...... .....+++.|+++.++++... .+.|..+++.... ...+ ..-.....+++++++..|+ +-...+.|.+
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~ 193 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence 223222 467899999976666665543 4688888875432 2222 2234688999999876554 4556678999
Q ss_pred EEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEcccc
Q 010871 341 ISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALE 400 (498)
Q Consensus 341 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~ 400 (498)
++++....... . ..... ...+. .++..|+.+. ..+.|.++|..++
T Consensus 194 ~~~~g~~~~~~--~-----~~~~~-P~gi~-------~d~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 194 LNPAQPGRRKV--L-----EGLQY-PFAVT-------SYGKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp EETTEEEEEEE--E-----ECCCS-EEEEE-------EETTEEEEEETTTTEEEEEETTTT
T ss_pred EecCCCceEEE--e-----cCCCC-ceEEE-------EeCCEEEEEECCCCeEEEEeCCCC
Confidence 98864221111 0 11111 12232 2344455444 5678999988654
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.50 E-value=1.7e-05 Score=70.32 Aligned_cols=149 Identities=9% Similarity=0.059 Sum_probs=103.8
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEE--EEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTD--FDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~--l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
-...+.|+ ++.+.++.+.+|.|+++|+.+ ++.+..+- ...... +++.. ++..+..-.++.+.++|..+.+.+
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~T-gkv~~~~l--~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSLES-AQPVWMER--LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCSSC-SSCSEEEE--CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEE
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEECCC-CcEEeEEC--CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEE
Confidence 35678886 467888888889999999998 66665552 223333 55432 234444456889999999999999
Q ss_pred EEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecC------CCeEEEEEcCCCCEEEEEcCCCeEEE
Q 010871 267 RVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD------SEVTSMDHDHTGQLLFCGDAQGCIYS 340 (498)
Q Consensus 267 ~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~------~~i~~l~~~~~~~~l~~~~~dg~i~i 340 (498)
.++.....-..+++ ++. .|+.+..++.|.++|..+.+.+..+... ..++.+.|. +|.+++....+..|.+
T Consensus 130 ~ti~~~~eGwGLt~--Dg~-~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 130 RTTRYSGEGWGLCY--WNG-KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLE 205 (268)
T ss_dssp EEEECSSCCCCEEE--ETT-EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred EEEeCCCceeEEec--CCC-EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEE
Confidence 99986544344443 344 4555556889999999999998887522 245677776 6766666667888999
Q ss_pred EEccCCc
Q 010871 341 ISMESHS 347 (498)
Q Consensus 341 ~d~~~~~ 347 (498)
.|..+..
T Consensus 206 IDp~TG~ 212 (268)
T 3nok_A 206 IDPATGT 212 (268)
T ss_dssp ECTTTCB
T ss_pred EeCCCCc
Confidence 8876544
No 262
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.41 E-value=0.00046 Score=61.34 Aligned_cols=211 Identities=14% Similarity=0.165 Sum_probs=129.2
Q ss_pred CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecC--CCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccc
Q 010871 273 SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD--SEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGAL 350 (498)
Q Consensus 273 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 350 (498)
..+..++|.|+++.++++...++.|...|.. ++.+..+... .....+++.+++.++++.-.++.+.++++.......
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 4678999999877788888889999999997 8888887543 578899999988877776677899999887654311
Q ss_pred -cccccccc-cCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccc-eeeEeEe--eccCCce-eeeEEEE
Q 010871 351 -SRSHRHRT-TGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQG-YLTFRCS--LKLAPRV-HSIRASF 424 (498)
Q Consensus 351 -~~~~~~~~-~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~-~~~~~~~--~~~~~~~-~~~~~~~ 424 (498)
........ ..........+++. +.++.|+++.......+|.+...... ....... ....... ..-..++
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d-----~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYS-----RQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEE-----TTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred eeeeeccccccccccCCcceEEEe-----CCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 11111000 01223334555554 88888888887777777776521000 0111100 0000011 1122355
Q ss_pred eeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec-CC------CCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 425 CPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ-GH------RFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 425 ~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~-~h------~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.| ..+.+++.......+.++|.... ......+. +. -...-.|+|.++|++.++ +.-..++++.-.
T Consensus 181 dp----~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 181 NQ----QKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp ET----TTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred cC----CCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence 55 45677777777888999997743 22223333 21 125689999999986655 666666666543
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.38 E-value=0.00073 Score=59.24 Aligned_cols=188 Identities=9% Similarity=0.009 Sum_probs=118.2
Q ss_pred ccEEEEEEecCCCCEEEEEeCC--CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCc
Q 010871 188 AAVTILKFGHMSSDLLAYGASD--GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA-SSSMDKTVRVWELTKGD 264 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~d--g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~ 264 (498)
.-...+.|+. +.+..+.+.+ ..|+++|+.+ ++....+.-.. ..........+..|+ ..-.++.+.++|..+.+
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~t-gkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLET-GRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTT-CCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCC-CCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc
Confidence 3467889975 5566666665 4899999998 77777665322 222222222344444 44568899999999999
Q ss_pred EEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecC------CCeEEEEEcCCCCEEEEEcCCCeE
Q 010871 265 CIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVD------SEVTSMDHDHTGQLLFCGDAQGCI 338 (498)
Q Consensus 265 ~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~------~~i~~l~~~~~~~~l~~~~~dg~i 338 (498)
.+.++.....-..++ +++..++++ ..++.|.++|..+.+.+..+... ..++.+.+. +|+.++..-.+..|
T Consensus 97 ~~~ti~~~~~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I 172 (243)
T 3mbr_X 97 PRARFRYPGEGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRI 172 (243)
T ss_dssp EEEEEECSSCCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEE
T ss_pred EEEEEeCCCCceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeE
Confidence 999998765444444 445555555 45889999999999998888532 345667765 66666666567788
Q ss_pred EEEEccCCcccccccccccc--c----CCCccceeeEEEeEeeEcCCCcEEEEEEc
Q 010871 339 YSISMESHSGALSRSHRHRT--T----GKRKCPVTTVQYRSFSLLAGGPVLLTCTQ 388 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~--~----~~~~~~i~~~~~~~~~~s~~~~~l~t~s~ 388 (498)
.+.|..+............. . .....-.+.+++. |+++.|++.+.
T Consensus 173 ~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d-----~~~~~lfVTGK 223 (243)
T 3mbr_X 173 ARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFD-----AEHDRLFVTGK 223 (243)
T ss_dssp EEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEE-----TTTTEEEEEET
T ss_pred EEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEc-----CCCCEEEEECC
Confidence 88887654432211111000 0 0112344556665 87777776664
No 264
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=0.00016 Score=70.45 Aligned_cols=248 Identities=8% Similarity=0.075 Sum_probs=135.4
Q ss_pred CeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCC----cEEEEEcCCCcE
Q 010871 233 DVTDFDFSS-NNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANK----EITVFNFSTGRI 307 (498)
Q Consensus 233 ~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg----~i~iwd~~~~~~ 307 (498)
....|+++| ++..|+.+...+.|+.+|+..+..............+++.+++..++++...++ .+.+++. .+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence 457899998 455666665558899999987765555555556889999996654555554322 2333443 3322
Q ss_pred E--EEeecCCCeEEEEEcC-CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEE
Q 010871 308 I--KKLVVDSEVTSMDHDH-TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLL 384 (498)
Q Consensus 308 ~--~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~ 384 (498)
. ..+........++++| ++.++++-..++.|+.++.+......... .........+ ++++++++|+
T Consensus 217 ~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~------~~~~~~P~gi-----a~~pdG~~ly 285 (430)
T 3tc9_A 217 KVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT------IQDSGWEFHI-----QFHPSGNYAY 285 (430)
T ss_dssp CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE------CSSSSCCEEE-----EECTTSSEEE
T ss_pred eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE------cCCCCcceeE-----EEcCCCCEEE
Confidence 2 2333344567888999 67777777778899999886432211100 0111122334 4449999555
Q ss_pred E-EEcCCcEEEEEccccccce---eeEeEeeccCCcee------eeEEEEeeeee--------ccCCCEEEEEeCCCcEE
Q 010871 385 T-CTQDGNLSFFSVALEIQGY---LTFRCSLKLAPRVH------SIRASFCPLLS--------LEKGEYIVAGSEDSNVY 446 (498)
Q Consensus 385 t-~s~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~~~~~~--------~~~~~~l~~gs~dg~I~ 446 (498)
. -...+.|..++........ ..+........... .+.....-++. .++|.++++-..++.|+
T Consensus 286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 4 4567789988876321110 00000000000000 00000001111 12356666656667888
Q ss_pred EEECCCCCccceeeecCC------------------CCCeEEEEEcCC-CCEEEEEeCCCeEEEeecCC
Q 010871 447 FYDLAKPKHSCVNKLQGH------------------RFPVVAVAWNHG-ENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 447 iwd~~~~~~~~~~~~~~h------------------~~~V~~l~~sp~-~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.++. ++. +..+.+. -.....|+++|+ +.++++-...+.|+..++++
T Consensus 366 ~i~~-~G~---v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e~ 430 (430)
T 3tc9_A 366 ILTP-QGR---VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYEE 430 (430)
T ss_dssp EECT-TSE---EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEECC
T ss_pred EECC-CCc---EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccCC
Confidence 8884 332 2222111 125789999995 66666655678899888753
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.34 E-value=0.0014 Score=60.91 Aligned_cols=227 Identities=6% Similarity=-0.024 Sum_probs=130.0
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC----CcEEEEee-cCCCeEE
Q 010871 245 YIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST----GRIIKKLV-VDSEVTS 319 (498)
Q Consensus 245 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~----~~~~~~~~-~~~~i~~ 319 (498)
+|+.+. ...|+..|+.+.+....+.....+..++|.+.++.++++-...+.|..+++.. ......+. .-.....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 344433 35699999998877776766678889999997777777777789999999876 22222222 2245678
Q ss_pred EEEcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC--CcEEEEE
Q 010871 320 MDHDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD--GNLSFFS 396 (498)
Q Consensus 320 l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d--g~i~iwd 396 (498)
+++++.+. ++++-...+.|.+++++........ .........+.+ +|.+..|+.+... +.|..++
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-------~~~~~~P~~iav-----dp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-------RENGSKPRAIVV-----DPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-------ECTTCCEEEEEE-----ETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEE-------ECCCCCcceEEe-----CCCCCEEEEEccCCCCeEEEEc
Confidence 99987555 4455567789999987643221111 111122344444 3766665555543 6777777
Q ss_pred ccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEE-EEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcC
Q 010871 397 VALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYI-VAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH 475 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp 475 (498)
+..... ..+ .. .........++.+ ++..| ++-...+.|..+|+.......+...........+|++.
T Consensus 150 ~dG~~~--~~~---~~-~~~~~P~gla~d~-----~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~- 217 (316)
T 1ijq_A 150 LNGVDI--YSL---VT-ENIQWPNGITLDL-----LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF- 217 (316)
T ss_dssp TTSCCE--EEE---EC-SSCSCEEEEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-
T ss_pred CCCCCe--EEE---EE-CCCCCceEEEEec-----cCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-
Confidence 653211 000 00 1111122234443 55554 44455679999999754332222221223456788885
Q ss_pred CCCEEEEEeCCCeEEEeecCC
Q 010871 476 GENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 476 ~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.+.++++-...+.|..++..+
T Consensus 218 ~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 218 EDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTT
T ss_pred CCEEEEEECCCCeEEEEeCCC
Confidence 355555665678888887643
No 266
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=0.00041 Score=67.82 Aligned_cols=156 Identities=12% Similarity=0.126 Sum_probs=101.6
Q ss_pred cEEEEEEecC-CCCEEEEEeCCCcEEEEEcCCCCceeEEeecC---CCCeEEEEE-------ccCCCEEEEEeCCC-c--
Q 010871 189 AVTILKFGHM-SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGH---SKDVTDFDF-------SSNNQYIASSSMDK-T-- 254 (498)
Q Consensus 189 ~V~~v~~sp~-~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h---~~~V~~l~~-------s~~~~~l~s~s~dg-~-- 254 (498)
....|+|+|. .+.++++-...+.|++.|+.. ..+...+..- ......|+| ++++++|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT-TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC-CEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 4678999983 455566555557788888876 4444333321 235799999 99998676665554 2
Q ss_pred ----EEEEECCC-CcEE-----EEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC-------CCcE----------
Q 010871 255 ----VRVWELTK-GDCI-----RVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS-------TGRI---------- 307 (498)
Q Consensus 255 ----v~iwd~~~-~~~~-----~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~-------~~~~---------- 307 (498)
|.+.+... +... ..+........++.+|+++.++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 55665443 2221 2232223455778899777888888888999999997 4543
Q ss_pred ----EEEeecCCCeEEEEEcCCCCEE-EEEcCCCeEEEEEccC
Q 010871 308 ----IKKLVVDSEVTSMDHDHTGQLL-FCGDAQGCIYSISMES 345 (498)
Q Consensus 308 ----~~~~~~~~~i~~l~~~~~~~~l-~~~~~dg~i~i~d~~~ 345 (498)
+...........++|+|+|+.| ++-.....|+.++.+.
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 1222233456899999999954 4445677888877654
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.34 E-value=0.00035 Score=68.03 Aligned_cols=156 Identities=13% Similarity=0.194 Sum_probs=96.3
Q ss_pred cEEEEEEecC-CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCC---Cc-EEEEECCCC
Q 010871 189 AVTILKFGHM-SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD---KT-VRVWELTKG 263 (498)
Q Consensus 189 ~V~~v~~sp~-~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d---g~-v~iwd~~~~ 263 (498)
....|+|+|+ +...|..+...+.|+.++..+ +... .+........+|+|+++|+++++.... .. +...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~-g~v~-~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN-QYVD-IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTT-TEEE-EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCC-CEEE-EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568899983 234455554448899999875 4443 344455568999999999944444321 11 323332222
Q ss_pred cE-EEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-e--cCCCeEEEEEcCCCCEE-EEEcCCCeE
Q 010871 264 DC-IRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-V--VDSEVTSMDHDHTGQLL-FCGDAQGCI 338 (498)
Q Consensus 264 ~~-~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~--~~~~i~~l~~~~~~~~l-~~~~~dg~i 338 (498)
.. ...+........+++.|.++.++++-..++.|+.+|..++.....+ . .......++++|+++.| ++-...+.|
T Consensus 218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 11 1222233455678888866667766667788999999877763333 2 22234579999999955 455567889
Q ss_pred EEEEccCC
Q 010871 339 YSISMESH 346 (498)
Q Consensus 339 ~i~d~~~~ 346 (498)
+.++++..
T Consensus 298 ~~~~~d~~ 305 (433)
T 4hw6_A 298 YRVDYNRE 305 (433)
T ss_dssp EEEEBCTT
T ss_pred EEEeCCCC
Confidence 99887643
No 268
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=0.0019 Score=68.23 Aligned_cols=281 Identities=14% Similarity=0.119 Sum_probs=154.0
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee-------cCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN-------GHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~-------~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
..|.++...+ ++ .|..|..++-|..||..+ .+...... -....|.++...+++.+.+ |+.+ -+.+||.
T Consensus 163 ~~i~~i~~d~-~g-~lwigt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~ 237 (781)
T 3v9f_A 163 EQTWTATEAE-DG-KLYIGHVEGGLSILSLND-KSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNA 237 (781)
T ss_dssp CCEEEEEEEE-TT-EEEEEETTTEEEEEETTT-TEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEET
T ss_pred cceEEEEECC-CC-CEEEEecCCCeEEEcCCC-CceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECC
Confidence 4588888876 55 455566665588899876 33222111 1135689999888886554 4455 5889998
Q ss_pred CCCcEEEEEe--------cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee---------------cCCCe
Q 010871 261 TKGDCIRVIY--------GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV---------------VDSEV 317 (498)
Q Consensus 261 ~~~~~~~~~~--------~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---------------~~~~i 317 (498)
.+++...... ....+.++...++ ..|..|+..+-|.++|..+++...... ....|
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~--g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v 315 (781)
T 3v9f_A 238 NTETFTNFHNNPGNIHGALSSYIFSIKQLKD--NKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASA 315 (781)
T ss_dssp TTTEEEC-----------CCCCEEEEEECTT--SEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCE
T ss_pred CCCcEEEEEcCCCccccccCceEEEEEECCC--CCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeE
Confidence 7765433221 1234667766553 356667775678999987765432111 23568
Q ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccc--cccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEE
Q 010871 318 TSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRH--RTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFF 395 (498)
Q Consensus 318 ~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iw 395 (498)
.++..+++|. |.+|+.++-|..++.....-........ .........|.++... .+|. |..|+.++-|..|
T Consensus 316 ~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d-----~~g~-lWigt~~~Gl~~~ 388 (781)
T 3v9f_A 316 RYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDD-----GQGK-LWIGTDGGGINVF 388 (781)
T ss_dssp EEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEEC-----TTSC-EEEEEBSSCEEEE
T ss_pred EEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEc-----CCCC-EEEEeCCCcEEEE
Confidence 9999998887 5556666667777764322111110000 0001123346555543 5554 5667767778888
Q ss_pred EccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec---CCCCCeEEEE
Q 010871 396 SVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ---GHRFPVVAVA 472 (498)
Q Consensus 396 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~---~h~~~V~~l~ 472 (498)
+......... ...... ... .+..+...++|. |.+|+.++-|..++..+++. ..+. .....|.++.
T Consensus 389 ~~~~~~~~~~--~~~~~~--~~~----~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~---~~~~~~~~~~~~v~~i~ 456 (781)
T 3v9f_A 389 ENGKRVAIYN--KENREL--LSN----SVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKF---QIIELEKNELLDVRVFY 456 (781)
T ss_dssp ETTEEEEECC-------C--CCS----BEEEEEECTTSC-EEEEETTEEEEEECSSSCEE---EECCSTTTCCCCEEEEE
T ss_pred ECCCCeEEEc--cCCCCC--CCc----ceEEEEECCCCC-EEEEeccCCEEEEcCCCCcE---EEeccCCCCCCeEEEEE
Confidence 8764311110 000000 001 111122223455 55577766799999876542 2222 2346799999
Q ss_pred EcCCCCEEEEEeCCCeEEEeecCC
Q 010871 473 WNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 473 ~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
..+++.+.+ |+. +-|..|+..+
T Consensus 457 ~d~~g~lwi-gt~-~Gl~~~~~~~ 478 (781)
T 3v9f_A 457 EDKNKKIWI-GTH-AGVFVIDLAS 478 (781)
T ss_dssp ECTTSEEEE-EET-TEEEEEESSS
T ss_pred ECCCCCEEE-EEC-CceEEEeCCC
Confidence 888876555 444 5688887654
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.26 E-value=0.0025 Score=60.00 Aligned_cols=234 Identities=5% Similarity=-0.056 Sum_probs=134.7
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-
Q 010871 234 VTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV- 312 (498)
Q Consensus 234 V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~- 312 (498)
.+|.+..++. +|+.+. ...|+..++........+.....+..++|.+.++.++++-...+.|..+++........+.
T Consensus 36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 3455555543 444333 3458888887766666666667788999998777777777778899999998765444332
Q ss_pred cCCCeEEEEEcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cC-
Q 010871 313 VDSEVTSMDHDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QD- 389 (498)
Q Consensus 313 ~~~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~d- 389 (498)
.......+++++.+. ++++-...+.|.+++++........ .........+.+. |.+..|+... ..
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-------~~~l~~P~~iavd-----p~~g~ly~td~~~~ 181 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-------WQSLEKPRAIALH-----PMEGTIYWTDWGNT 181 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-------CTTCSCEEEEEEE-----TTTTEEEEEECSSS
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-------eCCCCCcceEEEe-----cCcCeEEEeccCCC
Confidence 234567899987555 4455566788999988654322111 1111223444444 7555555444 34
Q ss_pred CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeE
Q 010871 390 GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVV 469 (498)
Q Consensus 390 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~ 469 (498)
+.|..+++........ . ..........++.+ .++.+.++-...+.|..+++..... ...+........
T Consensus 182 ~~I~r~~~dG~~~~~~-----~-~~~~~~PnGla~d~----~~~~lY~aD~~~~~I~~~~~dG~~~--~~~~~~~~~~P~ 249 (349)
T 3v64_C 182 PRIEASSMDGSGRRII-----A-DTHLFWPNGLTIDY----AGRRMYWVDAKHHVIERANLDGSHR--KAVISQGLPHPF 249 (349)
T ss_dssp CEEEEEETTSCSCEES-----C-CSSCSCEEEEEEET----TTTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSSEE
T ss_pred CEEEEEeCCCCCcEEE-----E-ECCCCCcceEEEeC----CCCEEEEEECCCCEEEEEeCCCCce--EEEEeCCCCCce
Confidence 6787777763211110 0 01111122234443 2344445545567899999875332 222233345677
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEeec
Q 010871 470 AVAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 470 ~l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
+|++. .+.+.++-...+.|...+.
T Consensus 250 giav~-~~~ly~td~~~~~V~~~~~ 273 (349)
T 3v64_C 250 AITVF-EDSLYWTDWHTKSINSANK 273 (349)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EEEEE-CCEEEEecCCCCeEEEEEc
Confidence 88883 4555555556677777763
No 270
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.26 E-value=0.0025 Score=57.84 Aligned_cols=262 Identities=10% Similarity=0.149 Sum_probs=154.8
Q ss_pred CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEE
Q 010871 209 DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFL 288 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 288 (498)
+..|.|.|+.++....+.-..-. +.-.+|..+.|+--. ..++.|+|+++.+.++.+.-...+.--.|... +.|
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~--~~L 120 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--NTV 120 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSS--SEE
T ss_pred CCEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCC--CeE
Confidence 34789999988555544332222 334578877776655 67899999999999999999899998888863 344
Q ss_pred EEEeCCCcEEEEEcCC-CcEEEEee-----cCCCeEEEEEcCCCCEEEEEcC-------CCeEEEEEccCCccccccccc
Q 010871 289 SVGNANKEITVFNFST-GRIIKKLV-----VDSEVTSMDHDHTGQLLFCGDA-------QGCIYSISMESHSGALSRSHR 355 (498)
Q Consensus 289 ~~g~~dg~i~iwd~~~-~~~~~~~~-----~~~~i~~l~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~ 355 (498)
+.. .+..|+-|++.. ..+++.+. ....|..-..+++.++++..+- .|.+.+|+.+.......
T Consensus 121 ~lV-T~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i---- 195 (365)
T 2xzh_A 121 ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---- 195 (365)
T ss_dssp EEE-ESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEE----
T ss_pred EEE-cCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccccee----
Confidence 433 256899999974 35555553 2456888888999997765432 36677887764433222
Q ss_pred ccccCCCccceeeEEEeEeeEcCC-CcEEEEEEc---CCcEEEEEccccc--c-ceeeEeEeeccCC---ceeeeEEEEe
Q 010871 356 HRTTGKRKCPVTTVQYRSFSLLAG-GPVLLTCTQ---DGNLSFFSVALEI--Q-GYLTFRCSLKLAP---RVHSIRASFC 425 (498)
Q Consensus 356 ~~~~~~~~~~i~~~~~~~~~~s~~-~~~l~t~s~---dg~i~iwd~~~~~--~-~~~~~~~~~~~~~---~~~~~~~~~~ 425 (498)
.+|-.....+.... .+. ...++.+.. .+.+.+.++.... . .+........+++ .-..+....+
T Consensus 196 ----eGhaa~F~~~~~~g---~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs 268 (365)
T 2xzh_A 196 ----EGHAASFAQFKMEG---NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 268 (365)
T ss_dssp ----CCSEEEEEEECCTT---CSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEE
T ss_pred ----eeeeeeeEEEecCC---CCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEec
Confidence 33333322222110 011 112333322 2578888885431 1 1111111111111 1222223333
Q ss_pred eeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 426 PLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 426 ~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+.-..++.-+.-|.|++||+.++. ++..-+-....|-.-+-+....-++.....|.|.--.+++
T Consensus 269 -----~kygviyviTK~G~ihlyDleTgt--~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 269 -----EKHDVVFLITKYGYIHLYDLETGT--CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp -----TTTTEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred -----ccCCEEEEEeCCcEEEEEEcccCc--EEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 366778888899999999999965 5555555556665555544444455555777776655544
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.0083 Score=63.25 Aligned_cols=289 Identities=9% Similarity=0.046 Sum_probs=155.5
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee-c-------CCCCeEEEEEcc--CCCEEEEEeCCCcEEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN-G-------HSKDVTDFDFSS--NNQYIASSSMDKTVRV 257 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~-~-------h~~~V~~l~~s~--~~~~l~s~s~dg~v~i 257 (498)
..|.+|...+ ++..|..|+.++-+..||..+ .... .+. . ....|.++.... ++ .|..++.++.|..
T Consensus 66 n~I~~i~~d~-~g~~lWigt~~~Gl~~~d~~~-~~f~-~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~ 141 (781)
T 3v9f_A 66 NELNEVYTDP-VQPVIWIATQRAGLNAYNYET-QSFS-VYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEY 141 (781)
T ss_dssp SCEEEEEECS-SSSEEEEEESSSCEEEEETTT-TEEE-EECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEE
T ss_pred cccceEEEcC-CCCEEEEEeCCCCcceECCCC-CeEE-eeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeE
Confidence 4588998876 666366677775699999876 3332 221 0 123688888877 66 4556664555889
Q ss_pred EECCCCcEEEEEec-------CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee--------cCCCeEEEEE
Q 010871 258 WELTKGDCIRVIYG-------VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV--------VDSEVTSMDH 322 (498)
Q Consensus 258 wd~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------~~~~i~~l~~ 322 (498)
+|..+++... +.. ...+.++...++ ..|..|+.++-|..||..+++...... ....|.++..
T Consensus 142 ~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~--g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 218 (781)
T 3v9f_A 142 LDIATGKFTH-YNKSTVPALPSEQTWTATEAED--GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYK 218 (781)
T ss_dssp EETTTTEEEE-ESTTTCTTCSCCCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEE
T ss_pred EECCCCeEEe-eccCcccCCCccceEEEEECCC--CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEE
Confidence 9987765433 321 234566666553 345556667679999988765443211 1356899999
Q ss_pred cCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccccc
Q 010871 323 DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQ 402 (498)
Q Consensus 323 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~ 402 (498)
.+++.+.+. +.+ -|.+||.....-.................|.++... .+|. |..|+..+-|.++|......
T Consensus 219 d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d-----~~g~-lWigt~~~Gl~~~~~~~~~~ 290 (781)
T 3v9f_A 219 DTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQL-----KDNK-LWIATELNGIMILDLQQNQF 290 (781)
T ss_dssp CTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEEC-----TTSE-EEEEESSSCEEEEETTCC--
T ss_pred cCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEEC-----CCCC-EEEEeCCCCeEEECCCCCee
Confidence 888876554 444 578887653321111000000001123345555442 5554 66677656688888764321
Q ss_pred ceeeE---eE--eeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeee-------cCCCCCeEE
Q 010871 403 GYLTF---RC--SLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKL-------QGHRFPVVA 470 (498)
Q Consensus 403 ~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~-------~~h~~~V~~ 470 (498)
..... .. .......... ..+..+....+|. |..|+.++-|..|+............ .-....|.+
T Consensus 291 ~~~~~~~f~~~~~~~~~~~l~~--~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 367 (781)
T 3v9f_A 291 LLPEQIRFEFIREGDNNYSLSN--ASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSS 367 (781)
T ss_dssp -------CEEECBCSSTTSBSS--SCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEE
T ss_pred eeeeccccccccCCCCCCCCCC--CeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEE
Confidence 11000 00 0000000000 0112222223554 56677667789998876442221110 012356999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 471 VAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 471 l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+...++|.+. .|+.++-|..|+..
T Consensus 368 i~~d~~g~lW-igt~~~Gl~~~~~~ 391 (781)
T 3v9f_A 368 VCDDGQGKLW-IGTDGGGINVFENG 391 (781)
T ss_dssp EEECTTSCEE-EEEBSSCEEEEETT
T ss_pred EEEcCCCCEE-EEeCCCcEEEEECC
Confidence 9988887755 45655667777754
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.00044 Score=67.26 Aligned_cols=154 Identities=8% Similarity=0.048 Sum_probs=100.7
Q ss_pred cEEEEEEec-CCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC-CC----cEEEEECCC
Q 010871 189 AVTILKFGH-MSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM-DK----TVRVWELTK 262 (498)
Q Consensus 189 ~V~~v~~sp-~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~-dg----~v~iwd~~~ 262 (498)
....|+++| .++. |..+...+.|+.+|+.. .. +..+.........|+|++++++|+.+.. ++ .+.+.+. .
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~-~~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEK-EY-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTT-TE-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCC-CE-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence 457889997 2344 44444448899999875 33 3344445566889999999996666554 22 2333343 3
Q ss_pred CcEE--EEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee--cCCCeEEEEEcCCCCE-EEEEcCCCe
Q 010871 263 GDCI--RVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV--VDSEVTSMDHDHTGQL-LFCGDAQGC 337 (498)
Q Consensus 263 ~~~~--~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~-l~~~~~dg~ 337 (498)
+... ..+........+++.|+++.++++-..++.|..++...+....... .......++|+|++++ +++-...+.
T Consensus 214 g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 214 SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 3221 3333344566788999666777777678899999998766533332 2345789999999994 455566789
Q ss_pred EEEEEccCC
Q 010871 338 IYSISMESH 346 (498)
Q Consensus 338 i~i~d~~~~ 346 (498)
|+.++.+..
T Consensus 294 I~~~~~d~~ 302 (430)
T 3tc9_A 294 ILRSDYDWK 302 (430)
T ss_dssp EEEEEEETT
T ss_pred EEEEeCCcc
Confidence 999887654
No 273
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.21 E-value=0.00038 Score=64.32 Aligned_cols=192 Identities=13% Similarity=0.254 Sum_probs=121.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccC----CC---EEEEEe-C--CCcEEEEECC--CCcEE
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSN----NQ---YIASSS-M--DKTVRVWELT--KGDCI 266 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~----~~---~l~s~s-~--dg~v~iwd~~--~~~~~ 266 (498)
...+++.....+-+.+||+ + ++.++.+.. +.+..+..-|+ |+ ++++.. . +++|++|++. ++. +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~-G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-D-GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-T-SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CccEEEEEcCCCCEEEEcC-C-CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 3456666667788999999 4 677777754 56777776663 22 233333 3 5789999774 333 4
Q ss_pred EEEec-------C-CCeEEEEE--EcCCC-cEEEEEeCCCcEEEEEc-------CCCcEEEEeecCCCeEEEEEcCCCCE
Q 010871 267 RVIYG-------V-SSQLCIRF--HPVNN-NFLSVGNANKEITVFNF-------STGRIIKKLVVDSEVTSMDHDHTGQL 328 (498)
Q Consensus 267 ~~~~~-------~-~~v~~i~~--~~~~~-~~l~~g~~dg~i~iwd~-------~~~~~~~~~~~~~~i~~l~~~~~~~~ 328 (498)
..+.. . ..+..+++ .+..+ .++++...+|.+..|++ .+.+.++++.....+..+...+....
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR 193 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence 44421 1 34455565 56444 47888889999999988 34567888888889999999999999
Q ss_pred EEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCc-EEEEEE-cCCcEEEEEcc
Q 010871 329 LFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGP-VLLTCT-QDGNLSFFSVA 398 (498)
Q Consensus 329 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~-~l~t~s-~dg~i~iwd~~ 398 (498)
|+++-++.-|..|+.+.....................+..+.+.. .++++ +|++++ .+..+.+||..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~---~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY---AADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE---CGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe---cCCCCEEEEEEcCCCCEEEEEECC
Confidence 999999877777775533311101000000112223456665421 14444 666666 56789999986
No 274
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.20 E-value=0.0029 Score=58.33 Aligned_cols=194 Identities=11% Similarity=0.074 Sum_probs=115.9
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCC--cEEEEECCCCcE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDK--TVRVWELTKGDC 265 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg--~v~iwd~~~~~~ 265 (498)
.....++|++ ++.++++-..++.|..||... .....+. -......+++.++|+++++..... .|..+|..+++.
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g--~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDG--NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTC--CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCCC--ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 3567899999 888777777889999999865 3333332 235688999999998666554332 466677777775
Q ss_pred EEEEecC--CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE-EEEe----------ecCCCeEEEEEcCCCCEEE-E
Q 010871 266 IRVIYGV--SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI-IKKL----------VVDSEVTSMDHDHTGQLLF-C 331 (498)
Q Consensus 266 ~~~~~~~--~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~----------~~~~~i~~l~~~~~~~~l~-~ 331 (498)
....... .....++..+ +...+++...++.|.++|..+++. +... ..-.....+ +++++.|+ +
T Consensus 108 ~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS 184 (306)
T ss_dssp EEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE
T ss_pred EEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE
Confidence 4333321 2223444444 444455544688999999876532 2111 011234555 77877555 4
Q ss_pred EcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 332 GDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 332 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
-...+.|+.|+++.. +........ . ..... ..++++++|+++++....+.|.+++..
T Consensus 185 d~~~~~I~~~~~~~~-g~~~~~~~~---~-~~~~P-----~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 185 NTEKMLLLRIPVDST-DKPGEPEIF---V-EQTNI-----DDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp ETTTTEEEEEEBCTT-SCBCCCEEE---E-ESCCC-----SSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred eCCCCEEEEEEeCCC-CCCCccEEE---e-ccCCC-----CCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 456789999998642 111000000 0 00112 234445899887777778899999864
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.19 E-value=0.003 Score=60.46 Aligned_cols=233 Identities=5% Similarity=-0.053 Sum_probs=135.4
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-c
Q 010871 235 TDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-V 313 (498)
Q Consensus 235 ~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~ 313 (498)
.|.+..+.. +|+.+. ...|+..++........+.....+..++|.+.++.++++-...+.|..+++........+. .
T Consensus 80 ~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 80 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp CEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred eECCccccc-eeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 455544433 444443 4568889988777666666667888999998777777777778899999998765444332 2
Q ss_pred CCCeEEEEEcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-C-C
Q 010871 314 DSEVTSMDHDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-D-G 390 (498)
Q Consensus 314 ~~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-d-g 390 (498)
......+++++.+. ++++-...+.|.+++++........ .........+.+. |.+..|+.+.. . +
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-------~~~l~~P~giavd-----p~~g~ly~td~~~~~ 225 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-------WQSLEKPRAIALH-----PMEGTIYWTDWGNTP 225 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-------CSSCSCEEEEEEE-----TTTTEEEEEECSSSC
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-------cCCCCCCcEEEEE-----cCCCeEEEeccCCCC
Confidence 24567788887655 4455556778888877643221111 1111223444443 76665555543 3 5
Q ss_pred cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEE
Q 010871 391 NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVA 470 (498)
Q Consensus 391 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~ 470 (498)
.|..+++........ . .........+++.+ .++.+.++-+..+.|..+|+..... ...+........+
T Consensus 226 ~I~r~~~dG~~~~~~----~--~~~~~~PnGlavd~----~~~~lY~aD~~~~~I~~~d~dG~~~--~~~~~~~~~~P~g 293 (386)
T 3v65_B 226 RIEASSMDGSGRRII----A--DTHLFWPNGLTIDY----AGRRMYWVDAKHHVIERANLDGSHR--KAVISQGLPHPFA 293 (386)
T ss_dssp EEEEEETTSCSCEEE----E--CSSCSCEEEEEEEG----GGTEEEEEETTTTEEEEECTTSCSC--EEEECSSCSSEEE
T ss_pred EEEEEeCCCCCcEEE----E--ECCCCCeeeEEEeC----CCCEEEEEECCCCEEEEEeCCCCee--EEEEECCCCCceE
Confidence 677777653211110 0 01111122234544 2444555555667899999875332 2223333456778
Q ss_pred EEEcCCCCEEEEEeCCCeEEEeec
Q 010871 471 VAWNHGENLLASSDLYGIVIVWKR 494 (498)
Q Consensus 471 l~~sp~~~~l~s~~~Dg~i~iW~~ 494 (498)
|++. .+.++++-...+.|..++.
T Consensus 294 iav~-~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 294 ITVF-EDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EEEE-TTEEEEEETTTTEEEEEET
T ss_pred EEEE-CCEEEEeeCCCCeEEEEEC
Confidence 8883 4555566656788888774
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.16 E-value=0.0053 Score=57.74 Aligned_cols=237 Identities=10% Similarity=0.027 Sum_probs=137.5
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCcEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA-SSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~ 266 (498)
+..+|.+..+ .+ +|+.+. ...|+..++.. ......+. ....+..++|.+.+..|+ +-...+.|..+++..+...
T Consensus 34 d~~~C~~~~~-~~-~ll~~~-~~~I~~i~~~g-~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 108 (349)
T 3v64_C 34 DRRSCKALGP-EP-VLLFAN-RIDIRQVLPHR-SEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 108 (349)
T ss_dssp TSSCEEESSS-CC-EEEEEC-BSCEEEECTTS-CCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCCccccccc-Cc-eeEeec-ccceEEEeCCC-CeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce
Confidence 3445666555 33 444433 34588888765 33333333 345588999997655555 5456788999998876544
Q ss_pred EEEec-CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEE-cCC-CeEEEEE
Q 010871 267 RVIYG-VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCG-DAQ-GCIYSIS 342 (498)
Q Consensus 267 ~~~~~-~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~-~~d-g~i~i~d 342 (498)
..+.. ...+..+++.+.+++++++-...+.|.+.++........+. .-.....++++|.+..|+.. ... +.|..++
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 43332 24566888888777777777778899999987554333332 33568899999876655544 444 7888888
Q ss_pred ccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEE-EcCCcEEEEEccccccceeeEeEeeccCCceeeeE
Q 010871 343 MESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC-TQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIR 421 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (498)
++........ .........+.+ ++++..|+.+ +..+.|..+++........ . .. .......+
T Consensus 189 ~dG~~~~~~~-------~~~~~~PnGla~-----d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~-~--~~-~~~~P~gi- 251 (349)
T 3v64_C 189 MDGSGRRIIA-------DTHLFWPNGLTI-----DYAGRRMYWVDAKHHVIERANLDGSHRKAV-I--SQ-GLPHPFAI- 251 (349)
T ss_dssp TTSCSCEESC-------CSSCSCEEEEEE-----ETTTTEEEEEETTTTEEEEEETTSCSCEEE-E--CS-SCSSEEEE-
T ss_pred CCCCCcEEEE-------ECCCCCcceEEE-----eCCCCEEEEEECCCCEEEEEeCCCCceEEE-E--eC-CCCCceEE-
Confidence 7653322111 111122344444 4766655554 4567788888764321111 0 00 11111222
Q ss_pred EEEeeeeeccCCCEEEEEeCCCcEEEEECCCC
Q 010871 422 ASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP 453 (498)
Q Consensus 422 ~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~ 453 (498)
++ ..+.++++-...+.|..++..++
T Consensus 252 -av------~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 252 -TV------FEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp -EE------ETTEEEEEETTTTEEEEEETTTC
T ss_pred -EE------ECCEEEEecCCCCeEEEEEccCC
Confidence 22 15666666666788888885554
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.13 E-value=0.0039 Score=55.33 Aligned_cols=216 Identities=13% Similarity=0.168 Sum_probs=126.7
Q ss_pred CcceeecceeeeecccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee-cCCCCeEEEEEccCCCEEEEEe
Q 010871 172 PAYSFVGMHCIFDQCKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN-GHSKDVTDFDFSSNNQYIASSS 250 (498)
Q Consensus 172 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~s 250 (498)
|.|++.-.-..+.|-.+.+..++|+|+++.+.++...++.|...|.. ++..+.+. +-....-.|++.+++.++++.-
T Consensus 11 ~~y~~~~~~~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E 88 (255)
T 3qqz_A 11 QNYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPLDFVKDLETIEYIGDNQFVISDE 88 (255)
T ss_dssp TTCEEEEEEEECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEECSSCSSEEEEEECSTTEEEEEET
T ss_pred cceEEEEeceECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEecCCCCChHHeEEeCCCEEEEEEC
Confidence 44555433235556667899999999555566668888888888886 56666653 2235678899998887777766
Q ss_pred CCCcEEEEECCCCcE---EEEEec-------CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC---CCcEEEEee-----
Q 010871 251 MDKTVRVWELTKGDC---IRVIYG-------VSSQLCIRFHPVNNNFLSVGNANKEITVFNFS---TGRIIKKLV----- 312 (498)
Q Consensus 251 ~dg~v~iwd~~~~~~---~~~~~~-------~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~---~~~~~~~~~----- 312 (498)
.++.+.++++..... +..... ....-.++|.|.+..++++.-.+ ...+|.+. ....+..+.
T Consensus 89 ~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~~ 167 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKALQ 167 (255)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHHH
T ss_pred CCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchhhc
Confidence 677888988765442 233321 12347999999776666655444 44444443 111122221
Q ss_pred ---cCCCeEEEEEcCCCC-EEEEEcCCCeEEEEEccCCcccccccccc-cccCCCccceeeEEEeEeeEcCCCcEEEEEE
Q 010871 313 ---VDSEVTSMDHDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRH-RTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT 387 (498)
Q Consensus 313 ---~~~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s 387 (498)
.-..+.+++++|... +++....+..|..+|.............. .........-..|.+ .++|+.+++ +
T Consensus 168 ~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~-----d~~G~lyIv-s 241 (255)
T 3qqz_A 168 RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAM-----DASGNIYIV-S 241 (255)
T ss_dssp HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEE-----CTTCCEEEE-E
T ss_pred cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEE-----CCCCCEEEE-c
Confidence 224578999998755 56667777888888876442111111100 000011123344444 489975544 6
Q ss_pred cCCcEEEEE
Q 010871 388 QDGNLSFFS 396 (498)
Q Consensus 388 ~dg~i~iwd 396 (498)
....+..|.
T Consensus 242 E~n~~y~f~ 250 (255)
T 3qqz_A 242 EPNRFYRFT 250 (255)
T ss_dssp TTTEEEEEE
T ss_pred CCceEEEEE
Confidence 666555553
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.13 E-value=0.0034 Score=60.00 Aligned_cols=236 Identities=10% Similarity=0.035 Sum_probs=136.3
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCcEEEE
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYI-ASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
-+|.+..+ . .+|+.+. ...|+..++.. ......+. ....+..++|.+.+..| ++-...+.|..+++..+.....
T Consensus 79 ~~C~~~~~-~-~~l~~~~-~~~I~~i~~~~-~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 153 (386)
T 3v65_B 79 RSCKALGP-E-PVLLFAN-RIDIRQVLPHR-SEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 153 (386)
T ss_dssp SCEEECSS-C-CEEEEEC-BSCEEEECTTS-CCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE
T ss_pred CeECCccc-c-ceeEeec-CccceeeccCC-CcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE
Confidence 34555544 3 3444443 35688888875 33333333 34568899999755554 4555678899999887654443
Q ss_pred EecC-CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEc-CC-CeEEEEEcc
Q 010871 269 IYGV-SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGD-AQ-GCIYSISME 344 (498)
Q Consensus 269 ~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~-~d-g~i~i~d~~ 344 (498)
+... .....+++.+.++.++++-...+.|.+.++........+. .-.....++++|.+..|+... .. +.|+.++++
T Consensus 154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 3322 3556788888777777777777889998886544333332 335688999998777665554 34 678888876
Q ss_pred CCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEE-EcCCcEEEEEccccccceeeEeEeeccCCceeeeEEE
Q 010871 345 SHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC-TQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRAS 423 (498)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (498)
........ .........+.+ ++++..|+.+ +..+.|..+++........ . .........+ .
T Consensus 234 G~~~~~~~-------~~~~~~PnGlav-----d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~-~---~~~~~~P~gi--a 295 (386)
T 3v65_B 234 GSGRRIIA-------DTHLFWPNGLTI-----DYAGRRMYWVDAKHHVIERANLDGSHRKAV-I---SQGLPHPFAI--T 295 (386)
T ss_dssp SCSCEEEE-------CSSCSCEEEEEE-----EGGGTEEEEEETTTTEEEEECTTSCSCEEE-E---CSSCSSEEEE--E
T ss_pred CCCcEEEE-------ECCCCCeeeEEE-----eCCCCEEEEEECCCCEEEEEeCCCCeeEEE-E---ECCCCCceEE--E
Confidence 43222111 111112334444 4655555544 4567788888764221111 0 0011111222 2
Q ss_pred EeeeeeccCCCEEEEEeCCCcEEEEECCCCC
Q 010871 424 FCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 424 ~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~ 454 (498)
+ ..+.++++....+.|..++..+++
T Consensus 296 v------~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 296 V------FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp E------ETTEEEEEETTTTEEEEEETTTCC
T ss_pred E------ECCEEEEeeCCCCeEEEEECCCCc
Confidence 2 156666666677889999865543
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.12 E-value=0.0056 Score=58.79 Aligned_cols=227 Identities=6% Similarity=-0.031 Sum_probs=129.8
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC----cEEEEee-cCCCeEE
Q 010871 245 YIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG----RIIKKLV-VDSEVTS 319 (498)
Q Consensus 245 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~-~~~~i~~ 319 (498)
+|+.+. ...|+..++........+.....+..++|.+.++.++++-...+.|+.+++... .....+. .......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 444443 367888898877766666666788999999977777777767888999998652 2222232 3456789
Q ss_pred EEEcCCCC-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc--CCcEEEEE
Q 010871 320 MDHDHTGQ-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ--DGNLSFFS 396 (498)
Q Consensus 320 l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~--dg~i~iwd 396 (498)
+++++.+. ++++-...+.|.+.+++........ .........+.+. |.+..|+.... .+.|...+
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~-------~~~~~~P~~iavd-----p~~g~ly~td~~~~~~I~~~~ 231 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-------RENGSKPRAIVVD-----PVHGFMYWTDWGTPAKIKKGG 231 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE-------ECSSCCEEEEEEE-----TTTTEEEEEECSSSCCEEEEE
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCceEEEE-------eCCCCCcceEEEe-----cccCeEEEEeCCCCCEEEEEe
Confidence 99998544 5555566788998887643322111 1111223344443 76666655543 36788777
Q ss_pred ccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEE-EEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcC
Q 010871 397 VALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIV-AGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNH 475 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp 475 (498)
+........ . .........+++.+ ++..|+ +-...+.|..+|+.......+....+......+|++.
T Consensus 232 ~dG~~~~~~----~--~~~l~~P~glavd~-----~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~- 299 (400)
T 3p5b_L 232 LNGVDIYSL----V--TENIQWPNGITLDL-----LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF- 299 (400)
T ss_dssp TTSCSCEEE----E--CSSCSCEEEEEEET-----TTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-
T ss_pred CCCCccEEE----E--ECCCCceEEEEEEe-----CCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-
Confidence 764321111 0 01111122224443 455554 4455678999998764432222222223456677773
Q ss_pred CCCEEEEEeCCCeEEEeecCC
Q 010871 476 GENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 476 ~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
.+.++++-...+.|..++..+
T Consensus 300 ~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 300 EDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp TTEEEEEESSSCSEEEEESSS
T ss_pred CCEEEEecCCCCeEEEEEcCC
Confidence 344555555667888877443
No 280
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.09 E-value=0.00014 Score=75.19 Aligned_cols=243 Identities=10% Similarity=0.029 Sum_probs=129.9
Q ss_pred EEEEcc-CCCEEEEEeCCC-----------cEEEEECCCCcEE--EEEecCCC--eEEEEEEcCCCcEEEEEe-CCCcEE
Q 010871 236 DFDFSS-NNQYIASSSMDK-----------TVRVWELTKGDCI--RVIYGVSS--QLCIRFHPVNNNFLSVGN-ANKEIT 298 (498)
Q Consensus 236 ~l~~s~-~~~~l~s~s~dg-----------~v~iwd~~~~~~~--~~~~~~~~--v~~i~~~~~~~~~l~~g~-~dg~i~ 298 (498)
++++.+ +++.++.|+.+. .+.+||..+++.. ..+..... ..++++.. ++.+++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 566777 888888887643 5889999887532 22322221 22356666 456777776 456899
Q ss_pred EEEcCCCcEEEEe--ecCCCeEEEEEcCCCCEEEEEc-CC-----CeEEEEEccCCccccccccccc-ccCCCccceeeE
Q 010871 299 VFNFSTGRIIKKL--VVDSEVTSMDHDHTGQLLFCGD-AQ-----GCIYSISMESHSGALSRSHRHR-TTGKRKCPVTTV 369 (498)
Q Consensus 299 iwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~i~~~ 369 (498)
+||..+++-...- .....-.+++..+++++++.|+ .+ ..+.+||....+-......... ........
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~---- 344 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG---- 344 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG----
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc----
Confidence 9999877544332 2223334566677899999988 34 4688998865432221000000 00000000
Q ss_pred EEeEeeEcCCCcEEEEEEcCC---------cEEEEEccccccceeeEeEeecc-----CCceeeeEEEEeeeeeccCCCE
Q 010871 370 QYRSFSLLAGGPVLLTCTQDG---------NLSFFSVALEIQGYLTFRCSLKL-----APRVHSIRASFCPLLSLEKGEY 435 (498)
Q Consensus 370 ~~~~~~~s~~~~~l~t~s~dg---------~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 435 (498)
.+..++..++.++.+| .+..||...... ......... ........+.+. ..++++
T Consensus 345 -----~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w--~~~~~~~~~~~~~~~~~~~~~av~~~----~~~~~i 413 (656)
T 1k3i_A 345 -----LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD--VKSAGKRQSNRGVAPDAMCGNAVMYD----AVKGKI 413 (656)
T ss_dssp -----GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE--EEEEEECEETTEECCCCBTCEEEEEE----TTTTEE
T ss_pred -----eeecCCceEEEECCCCcEEEecCccceeeeecCCcce--eecCCccccccccCCCCCCCceEecc----CCCCeE
Confidence 0013455555555544 456777664321 000000000 000011111111 137888
Q ss_pred EEEEeCCC-----------cEEEEECCCCCcccee--eecCCCCCe-EEEEEcCCCCEEEEEeCC-----------CeEE
Q 010871 436 IVAGSEDS-----------NVYFYDLAKPKHSCVN--KLQGHRFPV-VAVAWNHGENLLASSDLY-----------GIVI 490 (498)
Q Consensus 436 l~~gs~dg-----------~I~iwd~~~~~~~~~~--~~~~h~~~V-~~l~~sp~~~~l~s~~~D-----------g~i~ 490 (498)
++.|+.++ .|.+||..+.....+. .+ +.... .+++..|++++++.||.+ ..+.
T Consensus 414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m--p~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~ 491 (656)
T 1k3i_A 414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL--YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPE 491 (656)
T ss_dssp EEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC--SSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCE
T ss_pred EEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC--CCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceE
Confidence 88888543 6888888775533222 12 22222 344567899999999865 4688
Q ss_pred EeecCC
Q 010871 491 VWKRAK 496 (498)
Q Consensus 491 iW~~~~ 496 (498)
+||.++
T Consensus 492 ~ydp~t 497 (656)
T 1k3i_A 492 IYVPEQ 497 (656)
T ss_dssp EEEGGG
T ss_pred EEcCCC
Confidence 888764
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.08 E-value=0.00047 Score=72.31 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=73.6
Q ss_pred CeEEEEEc-cCCCEEEEEe-CCC----cEEEEECCCC-cEEE-EEecCCCeEEEEEEcCCCcEEEEEeCC----CcEEEE
Q 010871 233 DVTDFDFS-SNNQYIASSS-MDK----TVRVWELTKG-DCIR-VIYGVSSQLCIRFHPVNNNFLSVGNAN----KEITVF 300 (498)
Q Consensus 233 ~V~~l~~s-~~~~~l~s~s-~dg----~v~iwd~~~~-~~~~-~~~~~~~v~~i~~~~~~~~~l~~g~~d----g~i~iw 300 (498)
.+...+|| |||++|+-+. .+| +|+++|+.++ +.+. .+.. ....+.|+|++..++++.... ..|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~--~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG--TNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE--ECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC--ceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 67889999 9999887543 333 4999999998 6321 1111 123578999876666665432 368888
Q ss_pred EcCCCcE--EEEe--ecCCCeEEEEEcCCCCEEEEEc---CCCeEEEEEccCC
Q 010871 301 NFSTGRI--IKKL--VVDSEVTSMDHDHTGQLLFCGD---AQGCIYSISMESH 346 (498)
Q Consensus 301 d~~~~~~--~~~~--~~~~~i~~l~~~~~~~~l~~~~---~dg~i~i~d~~~~ 346 (498)
++.+++. ...+ ........+.|+|+|++|+... ....|+++|+...
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 9877642 2222 2334567889999999887655 2446888887654
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.07 E-value=0.0072 Score=56.00 Aligned_cols=222 Identities=10% Similarity=0.044 Sum_probs=128.4
Q ss_pred CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCcE--EEEEecCCCeEEEEEEcCCC
Q 010871 209 DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQ-YIASSSMDKTVRVWELTKGDC--IRVIYGVSSQLCIRFHPVNN 285 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~v~~i~~~~~~~ 285 (498)
...|+..++.........+......+.+++|.+.+. ++++-...+.|..+++..+.. ......-..+..+++.+.++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 456888888763212222222234567899998544 455556678899999886632 11222334566788887677
Q ss_pred cEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEc--CCCeEEEEEccCCcccccccccccccCCC
Q 010871 286 NFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGD--AQGCIYSISMESHSGALSRSHRHRTTGKR 362 (498)
Q Consensus 286 ~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (498)
.++++-...+.|.++++........+ ........++++|.+..|+.+. ..+.|..++++........ ...
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-------~~~ 164 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-------NSE 164 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE-------CSS
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE-------ECC
Confidence 77777777889999998754333222 3445688999998766666655 3578888887643221110 011
Q ss_pred ccceeeEEEeEeeEcCCCcEEEEE-EcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeC
Q 010871 363 KCPVTTVQYRSFSLLAGGPVLLTC-TQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSE 441 (498)
Q Consensus 363 ~~~i~~~~~~~~~~s~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~ 441 (498)
-..-..+. +++++..|+.+ +..+.|..+|+........ . . ........+ ++. .+.++++-..
T Consensus 165 l~~Pngla-----vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~-~--~-~~~~~P~gl--av~------~~~lywtd~~ 227 (318)
T 3sov_A 165 IYWPNGLT-----LDYEEQKLYWADAKLNFIHKSNLDGTNRQAV-V--K-GSLPHPFAL--TLF------EDILYWTDWS 227 (318)
T ss_dssp CSCEEEEE-----EETTTTEEEEEETTTTEEEEEETTSCSCEEE-E--C-SCCSCEEEE--EEE------TTEEEEEETT
T ss_pred CCCccEEE-----EeccCCEEEEEECCCCEEEEEcCCCCceEEE-e--c-CCCCCceEE--EEe------CCEEEEEecC
Confidence 11223444 44766655554 4567898998864321111 1 0 011111112 221 4455566666
Q ss_pred CCcEEEEECCCCC
Q 010871 442 DSNVYFYDLAKPK 454 (498)
Q Consensus 442 dg~I~iwd~~~~~ 454 (498)
.+.|..++..+++
T Consensus 228 ~~~V~~~~~~~G~ 240 (318)
T 3sov_A 228 THSILACNKYTGE 240 (318)
T ss_dssp TTEEEEEETTTCC
T ss_pred CCeEEEEECCCCC
Confidence 7889999987654
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.99 E-value=0.00048 Score=72.29 Aligned_cols=152 Identities=13% Similarity=0.139 Sum_probs=92.4
Q ss_pred cEEEEEEe-cCCCCEEEEEeC-CC----cEEEEEcCCCCcee-EEeecCCCCeEEEEEccCCCEEEEEeCC-----CcEE
Q 010871 189 AVTILKFG-HMSSDLLAYGAS-DG----TLTVCTVSDPPKVI-KLLNGHSKDVTDFDFSSNNQYIASSSMD-----KTVR 256 (498)
Q Consensus 189 ~V~~v~~s-p~~~~~lasg~~-dg----~i~iwd~~~~~~~~-~~~~~h~~~V~~l~~s~~~~~l~s~s~d-----g~v~ 256 (498)
.+...+|| | +|++||.+.. +| .|+++|+.++.+.+ ..+.. ....+.|+|||+.|+....| ..|.
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 68889999 9 8888886543 33 49999998830321 11211 13468899999888877665 2588
Q ss_pred EEECCCCcE--EEEEec--CCCeEEEEEEcCCCcEEEEEeC--CCcEEEEEcCCCc-EE--EEe-e-cCCCeEEEEEcCC
Q 010871 257 VWELTKGDC--IRVIYG--VSSQLCIRFHPVNNNFLSVGNA--NKEITVFNFSTGR-II--KKL-V-VDSEVTSMDHDHT 325 (498)
Q Consensus 257 iwd~~~~~~--~~~~~~--~~~v~~i~~~~~~~~~l~~g~~--dg~i~iwd~~~~~-~~--~~~-~-~~~~i~~l~~~~~ 325 (498)
++++.++.. ...+.. ..-...+.|+|++..++++... ...|.++|+.++. .. ..+ . ......++.|+..
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g 330 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT 330 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence 888887642 233332 2335678899977666655533 3468888988752 12 333 2 3344556665544
Q ss_pred CCEEEEEcCC--C--eEEEEEcc
Q 010871 326 GQLLFCGDAQ--G--CIYSISME 344 (498)
Q Consensus 326 ~~~l~~~~~d--g--~i~i~d~~ 344 (498)
+.+++....+ + .|+.+++.
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCC
Confidence 4444554443 2 56666654
No 284
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.91 E-value=0.014 Score=53.95 Aligned_cols=221 Identities=10% Similarity=-0.010 Sum_probs=127.5
Q ss_pred CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCC----CcEEEEEec-CCCeEEEEEEcC
Q 010871 210 GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYI-ASSSMDKTVRVWELTK----GDCIRVIYG-VSSQLCIRFHPV 283 (498)
Q Consensus 210 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~s~dg~v~iwd~~~----~~~~~~~~~-~~~v~~i~~~~~ 283 (498)
..|+..|+.. ......+. ....+.+++|.+.+..| ++-...+.|..+++.. ......+.. ...+..+++.+.
T Consensus 10 ~~I~~i~~~~-~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTLDR-SEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEETTS-CCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEECCC-cceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 4588889886 44444333 44567899999866554 4555668899999876 222222322 235568888876
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcC-C-CeEEEEEccCCcccccccccccccC
Q 010871 284 NNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDA-Q-GCIYSISMESHSGALSRSHRHRTTG 360 (498)
Q Consensus 284 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~ 360 (498)
++++.++-...+.|.++++........+. .......++++|.+..|+.+.. . +.|..++++........ .
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~-------~ 160 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-------T 160 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-------C
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE-------E
Confidence 77777777778899999987544333333 3457889999997666555543 2 68888887643221110 0
Q ss_pred CCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEE
Q 010871 361 KRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAG 439 (498)
Q Consensus 361 ~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 439 (498)
..-.....+.+ ++++..|+.+. ..+.|..+|+...... .+............+ ++. .+.++++-
T Consensus 161 ~~~~~P~gla~-----d~~~~~lY~~D~~~~~I~~~d~dg~~~~--~~~~~~~~~~~P~gi--av~------~~~ly~~d 225 (316)
T 1ijq_A 161 ENIQWPNGITL-----DLLSGRLYWVDSKLHSISSIDVNGGNRK--TILEDEKRLAHPFSL--AVF------EDKVFWTD 225 (316)
T ss_dssp SSCSCEEEEEE-----ETTTTEEEEEETTTTEEEEEETTSCSCE--EEEECTTTTSSEEEE--EEE------TTEEEEEE
T ss_pred CCCCCceEEEE-----eccCCEEEEEECCCCeEEEEecCCCceE--EEeecCCccCCcEEE--EEE------CCEEEEEE
Confidence 11122334444 47766665554 5678999998742211 111100011111222 221 45666666
Q ss_pred eCCCcEEEEECCCCC
Q 010871 440 SEDSNVYFYDLAKPK 454 (498)
Q Consensus 440 s~dg~I~iwd~~~~~ 454 (498)
...+.|..++..+++
T Consensus 226 ~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 226 IINEAIFSANRLTGS 240 (316)
T ss_dssp TTTTEEEEEETTTCC
T ss_pred CCCCeEEEEeCCCCc
Confidence 667889999876543
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.90 E-value=0.0087 Score=55.43 Aligned_cols=199 Identities=7% Similarity=-0.053 Sum_probs=120.8
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCcEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNN-QYIASSSMDKTVRVWELTKGDCIR 267 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~ 267 (498)
.+..++|++.++.++++-...+.|..++..........+...-.....+++.+.+ .+.++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 5678999985566666666778899999876322222333333456788888744 455555667889999987544333
Q ss_pred EE-ecCCCeEEEEEEcCCCcEEEEEe-CCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEE-cCCCeEEEEEc
Q 010871 268 VI-YGVSSQLCIRFHPVNNNFLSVGN-ANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCG-DAQGCIYSISM 343 (498)
Q Consensus 268 ~~-~~~~~v~~i~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~-~~dg~i~i~d~ 343 (498)
.+ ........+++.|.++.++++-. ..+.|...++......... ..-.....+++++++..|+.+ ...+.|..+++
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 33 23356789999987666555542 3578888887643322222 223457899999976665554 55778999998
Q ss_pred cCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 344 ESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
+........ .........+.+. .+..+++-...+.|..++..++
T Consensus 196 dG~~~~~~~-------~~~~~~P~glav~------~~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 196 DGTNRQAVV-------KGSLPHPFALTLF------EDILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp TSCSCEEEE-------CSCCSCEEEEEEE------TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCceEEEe-------cCCCCCceEEEEe------CCEEEEEecCCCeEEEEECCCC
Confidence 753322111 1111222333331 3445555556677888887544
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.89 E-value=0.0035 Score=57.43 Aligned_cols=152 Identities=6% Similarity=0.037 Sum_probs=101.6
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeE-Eeec----CC--CCeEEEEE---ccCCCEEEEEe----------
Q 010871 191 TILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIK-LLNG----HS--KDVTDFDF---SSNNQYIASSS---------- 250 (498)
Q Consensus 191 ~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~-~~~~----h~--~~V~~l~~---s~~~~~l~s~s---------- 250 (498)
-+++|++.++.++++.-..|+|..|+... +.... .+.+ .. ..+..|.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~-~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKT-QSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTT-CCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCC-CeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 46889884444444444799999999975 32222 2322 11 13579999 68877777543
Q ss_pred ---CCCcEEEEECC---CCcEEEEEecC--------------CCeEEEEEEcCCCcEEEEEeCC-CcEEEEEcCCCcEEE
Q 010871 251 ---MDKTVRVWELT---KGDCIRVIYGV--------------SSQLCIRFHPVNNNFLSVGNAN-KEITVFNFSTGRIIK 309 (498)
Q Consensus 251 ---~dg~v~iwd~~---~~~~~~~~~~~--------------~~v~~i~~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~ 309 (498)
.+..|..+|+. +++.+...... .....++..+++ +..++++.. +.|..++........
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~~~~ 173 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKTVST 173 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCCEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCEEee
Confidence 25779999999 78777666521 136688888854 566667677 777777765432221
Q ss_pred Ee-ec-----CCCeEEEEEcCCCCEEEEEcCCCeEEEEEcc
Q 010871 310 KL-VV-----DSEVTSMDHDHTGQLLFCGDAQGCIYSISME 344 (498)
Q Consensus 310 ~~-~~-----~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~ 344 (498)
.. .. ....+.|+++|+|..|++....|.|..+|+.
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 11 11 1236799999999999888779999999987
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.86 E-value=0.04 Score=57.60 Aligned_cols=228 Identities=8% Similarity=-0.026 Sum_probs=129.7
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCE-EEEEeCCCcEEEEECCCC----cEEEEEe-cCCCe
Q 010871 202 LLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQY-IASSSMDKTVRVWELTKG----DCIRVIY-GVSSQ 275 (498)
Q Consensus 202 ~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~-l~s~s~dg~v~iwd~~~~----~~~~~~~-~~~~v 275 (498)
+|+.+. ...|+..++.. .... .+......+..|+|.+.... +++-...+.|+.+++... .....+. ....+
T Consensus 397 ~Ll~an-~~~Ir~i~l~~-~~~~-~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDR-SEYT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEEC-BSSEEEECTTS-CCCE-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred cccccc-ccceeEeeccC-Ccce-eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 444433 45688888765 3333 33334567889999985544 455556678988988753 2233333 23456
Q ss_pred EEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcC--CCeEEEEEccCCcccccc
Q 010871 276 LCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDA--QGCIYSISMESHSGALSR 352 (498)
Q Consensus 276 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~ 352 (498)
..+++.+.+++++++-...+.|.+.++........+. .-.....|+++|.+..|+.... .+.|...+++........
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence 6888888777888888788999999997554433333 3456899999998666665543 367888887643322211
Q ss_pred cccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeecc
Q 010871 353 SHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLE 431 (498)
Q Consensus 353 ~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (498)
.........|.+ ++.+..|+.+. ..+.|..+++.......+ . .......+.+.+.+.
T Consensus 554 -------~~~l~~P~GLav-----D~~~~~LYwaD~~~~~I~~~d~dG~~~~~v--~--~~~~~l~~P~glav~------ 611 (791)
T 3m0c_C 554 -------TENIQWPNGITL-----DLLSGRLYWVDSKLHSISSIDVNGGNRKTI--L--EDEKRLAHPFSLAVF------ 611 (791)
T ss_dssp -------CSSCSCEEEEEE-----ETTTTEEEEEETTTTEEEEEETTSCSCEEE--E--ECTTTTSSEEEEEEE------
T ss_pred -------eCCCCCceEEEE-----ecCCCeEEEEeCCCCcEEEEecCCCceEEE--e--cCCCccCCCCEEEEe------
Confidence 111122344444 36666665554 456788888764322111 1 110111122222221
Q ss_pred CCCEEEEEeCCCcEEEEECCCCC
Q 010871 432 KGEYIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 432 ~~~~l~~gs~dg~I~iwd~~~~~ 454 (498)
.+.++++-...+.|...+..+++
T Consensus 612 ~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 612 EDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEECCCCEEEEEeCCCCc
Confidence 34555555566788888876653
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.83 E-value=0.025 Score=54.25 Aligned_cols=229 Identities=9% Similarity=-0.021 Sum_probs=133.8
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCC----cEEEEEe-cCCC
Q 010871 201 DLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIA-SSSMDKTVRVWELTKG----DCIRVIY-GVSS 274 (498)
Q Consensus 201 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~----~~~~~~~-~~~~ 274 (498)
.+|+.+. ...|+..++.. ..... +......+..|+|++.+..|+ +-...+.|..+++... .....+. ....
T Consensus 84 ~~ll~~~-~~~I~~i~l~~-~~~~~-~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDR-SEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp CEEEEEE-TTEEEEECTTS-CSCEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred ceeEEec-cceeEEEccCC-cceeE-eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 3444444 35688888875 33333 334556789999998655555 4455678988988752 2233333 2346
Q ss_pred eEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcC--CCeEEEEEccCCccccc
Q 010871 275 QLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDA--QGCIYSISMESHSGALS 351 (498)
Q Consensus 275 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~ 351 (498)
+..+++.+.++++.++-...+.|.+.++........+. .......|+++|.+..|+.... .+.|...+++.......
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence 77888888677777777778899999987655444443 3456889999997776665542 46788888764332221
Q ss_pred ccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-cCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeec
Q 010871 352 RSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-QDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSL 430 (498)
Q Consensus 352 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (498)
. .........+.+ ++++..|+.+. ..+.|..+|+....... +.. ..........+.+
T Consensus 241 ~-------~~~l~~P~glav-----d~~~~~lY~aD~~~~~I~~~d~dG~~~~~--~~~--~~~~l~~P~gl~v------ 298 (400)
T 3p5b_L 241 V-------TENIQWPNGITL-----DLLSGRLYWVDSKLHSISSIDVNGGNRKT--ILE--DEKRLAHPFSLAV------ 298 (400)
T ss_dssp E-------CSSCSCEEEEEE-----ETTTTEEEEEETTTTEEEEEETTSCCCEE--EEE--CSSTTSSEEEEEE------
T ss_pred E-------ECCCCceEEEEE-----EeCCCEEEEEECCCCEEEEEeCCCCccEE--EEe--CCCCCCCCEEEEE------
Confidence 1 111122344444 47666666554 46778888886432211 111 0001111222222
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCC
Q 010871 431 EKGEYIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 431 ~~~~~l~~gs~dg~I~iwd~~~~~ 454 (498)
..+.++++-...+.|..+|..+++
T Consensus 299 ~~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 299 FEDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp ETTEEEEEESSSCSEEEEESSSCC
T ss_pred eCCEEEEecCCCCeEEEEEcCCCC
Confidence 145666666677889999976653
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.81 E-value=0.0098 Score=54.48 Aligned_cols=162 Identities=12% Similarity=0.145 Sum_probs=106.4
Q ss_pred cCCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCcEEEE-Eec-----CC--CeEEEEE---EcCCCcEEEEEe----
Q 010871 229 GHSKDVTDFDFSSNNQYIASSS-MDKTVRVWELTKGDCIRV-IYG-----VS--SQLCIRF---HPVNNNFLSVGN---- 292 (498)
Q Consensus 229 ~h~~~V~~l~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~-~~~-----~~--~v~~i~~---~~~~~~~l~~g~---- 292 (498)
....--.+++|.+....|+.++ ..++|..||...+..... +.. .. .+..+.+ .|. +.++++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccc
Confidence 3334446789987555555555 789999999986654433 221 11 2467888 475 56666543
Q ss_pred ---------CCCcEEEEEcC---CCcEEEEeec--------------CCCeEEEEEcCCCCEEEEEcCC-CeEEEEEccC
Q 010871 293 ---------ANKEITVFNFS---TGRIIKKLVV--------------DSEVTSMDHDHTGQLLFCGDAQ-GCIYSISMES 345 (498)
Q Consensus 293 ---------~dg~i~iwd~~---~~~~~~~~~~--------------~~~i~~l~~~~~~~~l~~~~~d-g~i~i~d~~~ 345 (498)
.+..|..+|+. +++.+..... ......++..++|+..++++.. +.|..++.+.
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 25779999999 7877766541 1248899999999999988888 8888777654
Q ss_pred CcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 346 HSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
....... ... .........+.+.+. |+|..|++....|.|..+|+.
T Consensus 169 ~~~~~~~-~~~-~~~~~~~G~nGIv~~-----pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 169 KTVSTFA-WES-GNGGQRPGYSGITFD-----PHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CCEEEEE-ECC-CCSSSCCSCSEEEEE-----TTTTEEEEESSSSSEEEEECS
T ss_pred CEEeeee-ecC-CCcccccCcceEEEe-----CCCCEEEEEcCCCeEEEEcCC
Confidence 3211110 000 001122234566665 999999988779999999987
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.79 E-value=0.0077 Score=55.69 Aligned_cols=199 Identities=11% Similarity=0.222 Sum_probs=112.9
Q ss_pred CcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCC----CC---EEEEEcC---CCeEEEEEccCCcccccccc
Q 010871 285 NNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHT----GQ---LLFCGDA---QGCIYSISMESHSGALSRSH 354 (498)
Q Consensus 285 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~----~~---~l~~~~~---dg~i~i~d~~~~~~~~~~~~ 354 (498)
..+++.....+-+.+||+ +|+.+..+.. ..++.+.+-|. |+ ++++... ++.|.+|+++.....+....
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 345666667889999999 8999888754 56777776553 22 2333333 57899998864443322110
Q ss_pred ccc-ccCCCccceeeEEEeEeeEcCC-Cc-EEEEEEcCCcEEEEEccccccceeeEe--EeeccCCceeeeEEEEeeeee
Q 010871 355 RHR-TTGKRKCPVTTVQYRSFSLLAG-GP-VLLTCTQDGNLSFFSVALEIQGYLTFR--CSLKLAPRVHSIRASFCPLLS 429 (498)
Q Consensus 355 ~~~-~~~~~~~~i~~~~~~~~~~s~~-~~-~l~t~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 429 (498)
... ........+..+++.. ++. +. ++++...+|.+..|++.....+....+ ..+....... .+...
T Consensus 118 ~~~~pv~t~~~~pyGlcly~---~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~E--gcvvD---- 188 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYH---SQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTE--GMAAD---- 188 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEE---CTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEE--EEEEE----
T ss_pred ccccCcCCCCCCeeEEEEEe---cCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcc--eEEEc----
Confidence 000 0001113334444310 253 43 688888999999999965333322222 2223333222 22222
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCC---ccceeeec-CC-CCCeEEEEE--cCCCC-EEEEEe-CCCeEEEeecC
Q 010871 430 LEKGEYIVAGSEDSNVYFYDLAKPK---HSCVNKLQ-GH-RFPVVAVAW--NHGEN-LLASSD-LYGIVIVWKRA 495 (498)
Q Consensus 430 ~~~~~~l~~gs~dg~I~iwd~~~~~---~~~~~~~~-~h-~~~V~~l~~--sp~~~-~l~s~~-~Dg~i~iW~~~ 495 (498)
+....|+.+-++.-|..|+..... ...+..+. ++ ...+..|++ .++++ +|++++ .+.++.||+.+
T Consensus 189 -d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 189 -DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp -TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred -CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 367889999998777777755221 23344332 22 246888888 45555 555554 67899999986
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.75 E-value=0.035 Score=58.01 Aligned_cols=227 Identities=6% Similarity=-0.039 Sum_probs=125.1
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC----cEEEEee-cCCCeEE
Q 010871 245 YIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG----RIIKKLV-VDSEVTS 319 (498)
Q Consensus 245 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~-~~~~i~~ 319 (498)
+|+.+ ....|+..++........+.....+..++|.+.++.++++-...+.|+.+++... .....+. .......
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred ccccc-cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence 44433 3456888888877766666677788899999977777777777788999998653 2222232 3456778
Q ss_pred EEEcCCCCE-EEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-C-CcEEEEE
Q 010871 320 MDHDHTGQL-LFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-D-GNLSFFS 396 (498)
Q Consensus 320 l~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-d-g~i~iwd 396 (498)
|++++.++. +++-...+.|.+.+++........ .........|.+. |.+.+|+.... . +.|.+.+
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~-------~~~l~~P~gIaVD-----p~~g~LYwtD~g~~~~I~~~~ 543 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-------RENGSKPRAIVVD-----PVHGFMYWTDWGTPAKIKKGG 543 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-------ECTTCCEEEEEEE-----TTTTEEEEEECSSSCEEEEEE
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEE-------eCCCCCcceEEEe-----cCCCCEEEecCCCCCeEEEEe
Confidence 999987754 455566788999988754322211 1111223444444 76555555543 2 5677777
Q ss_pred ccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCC
Q 010871 397 VALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHG 476 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~ 476 (498)
+...... . ... ........+++.+ ..++++++-...+.|..+++.......+..-.+.-....+|++..
T Consensus 544 ~dG~~~~--~--lv~--~~l~~P~GLavD~----~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~- 612 (791)
T 3m0c_C 544 LNGVDIY--S--LVT--ENIQWPNGITLDL----LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE- 612 (791)
T ss_dssp TTSCCEE--E--EEC--SSCSCEEEEEEET----TTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-
T ss_pred cCCCceE--E--EEe--CCCCCceEEEEec----CCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-
Confidence 7532111 1 110 1111122223333 234444444556789999987644322221112223455677643
Q ss_pred CCEEEEEeCCCeEEEeecC
Q 010871 477 ENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 477 ~~~l~s~~~Dg~i~iW~~~ 495 (498)
+.++++-...+.|...+..
T Consensus 613 ~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 613 DKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp TEEEEEETTTTEEEEEETT
T ss_pred CEEEEEECCCCEEEEEeCC
Confidence 2334444455677766643
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.74 E-value=0.052 Score=55.23 Aligned_cols=159 Identities=8% Similarity=-0.003 Sum_probs=99.7
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCE-EEEEeCCCcEEEEECCCCcEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQY-IASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~-l~s~s~dg~v~iwd~~~~~~~ 266 (498)
..+..|+|++.++.++++-...+.|..+++.........+.........|++.+.+.. .++-...+.|.+.++......
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 3578999998455455555557889899887522223334433457889999985554 455556788999998765433
Q ss_pred EEE-ecCCCeEEEEEEcCCCcEEEEEe-CCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEE-cCCCeEEEEE
Q 010871 267 RVI-YGVSSQLCIRFHPVNNNFLSVGN-ANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCG-DAQGCIYSIS 342 (498)
Q Consensus 267 ~~~-~~~~~v~~i~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~-~~dg~i~i~d 342 (498)
..+ ..-.....+++.|.++.++++-. ..+.|...++......... ..-.....|++++++..|+.+ ...+.|..++
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~ 199 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 199 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence 333 22346778999997666666542 2466777777543332222 234568899999876655555 4567788888
Q ss_pred ccCC
Q 010871 343 MESH 346 (498)
Q Consensus 343 ~~~~ 346 (498)
++..
T Consensus 200 ~dG~ 203 (619)
T 3s94_A 200 LDGT 203 (619)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 293
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.72 E-value=0.034 Score=52.64 Aligned_cols=262 Identities=11% Similarity=0.152 Sum_probs=157.2
Q ss_pred CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEE
Q 010871 209 DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFL 288 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 288 (498)
+..|.|-|+.++....+.-..- -+.-.+|..+.|+--. ..++.|+|+++.+.+..+.-...|.--.|... +.|
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~--~~l 119 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--NTV 119 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCC----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET--TEE
T ss_pred CCeEEEEECCCCCcceeccccc----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC--CeE
Confidence 4478999998855554432221 2345677777666554 67899999999999999998888888888863 344
Q ss_pred EEEeCCCcEEEEEcCC-CcEEEEee-----cCCCeEEEEEcCCCCEEEEEc-------CCCeEEEEEccCCccccccccc
Q 010871 289 SVGNANKEITVFNFST-GRIIKKLV-----VDSEVTSMDHDHTGQLLFCGD-------AQGCIYSISMESHSGALSRSHR 355 (498)
Q Consensus 289 ~~g~~dg~i~iwd~~~-~~~~~~~~-----~~~~i~~l~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~ 355 (498)
+.. .+..|+-|++.. ..+++.+. ....|..-..+++.++++..+ -.|.+.+|+.+.......
T Consensus 120 ~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i---- 194 (494)
T 1bpo_A 120 ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---- 194 (494)
T ss_dssp EEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEE----
T ss_pred EEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchh----
Confidence 444 456899999974 34555554 245688888899999876443 246778887764433322
Q ss_pred ccccCCCccceeeEEEeEeeEcCC-CcEEEEEEc---CCcEEEEEccccc---cceeeEeEeeccCC---ceeeeEEEEe
Q 010871 356 HRTTGKRKCPVTTVQYRSFSLLAG-GPVLLTCTQ---DGNLSFFSVALEI---QGYLTFRCSLKLAP---RVHSIRASFC 425 (498)
Q Consensus 356 ~~~~~~~~~~i~~~~~~~~~~s~~-~~~l~t~s~---dg~i~iwd~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~ 425 (498)
.+|-.....+.... .+. ...++.+.. .+.+.+.++.... ..+........+++ .-..+....+
T Consensus 195 ----eGhaa~F~~~~~~g---~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs 267 (494)
T 1bpo_A 195 ----EGHAASFAQFKMEG---NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 267 (494)
T ss_dssp ----CCSEEEEEEEECTT---CSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE
T ss_pred ----eeeeeeeEEEecCC---CCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec
Confidence 44433333322210 001 123333333 2788888885431 11111111111111 1222333333
Q ss_pred eeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecCC
Q 010871 426 PLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 426 ~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~ 496 (498)
+.-..++.-+.-|.|++||+.++. ++..-+-....|-.-+-+....-++.....|.|.--.+++
T Consensus 268 -----~kygviyviTK~G~i~lyDleTgt--~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 268 -----EKHDVVFLITKYGYIHLYDLETGT--CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp -----TTTTEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred -----ccCCEEEEEecCceEEEEecccce--eeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 367788888899999999999965 5555554556666555555544555566778776655544
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.71 E-value=0.027 Score=51.15 Aligned_cols=221 Identities=14% Similarity=0.164 Sum_probs=129.8
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEE
Q 010871 253 KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~ 332 (498)
..|.|-|+..+..+....-. .-+...+| ..++++.-. ..++.++|+++.+.+..+.....|.-=.|-.+.. |+..
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~--AdsAIMnP-~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~-L~lV 123 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPIS--ADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VALV 123 (365)
T ss_dssp EEEEEEETTSTTSCEEEECC--CSEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSE-EEEE
T ss_pred CEEEEEECCCCCCccccccc--cceeeeCC-CccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCe-EEEE
Confidence 36888888876543222211 12344577 446666654 6889999999999999999888888888876544 4433
Q ss_pred cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-------CCcEEEEEcccccccee
Q 010871 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-------DGNLSFFSVALEIQGYL 405 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-------dg~i~iwd~~~~~~~~~ 405 (498)
+ +..|+.|++...........+...+ ...++..+..+++.++++..+- .|.+.+|..+....
T Consensus 124 T-~taVyHWs~~~~s~P~kvFdR~~~L-------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--- 192 (365)
T 2xzh_A 124 T-DNAVYHWSMEGESQPVKMFDRHSSL-------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--- 192 (365)
T ss_dssp E-SSEEEEEESSTTCCCEEEEECCGGG-------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE---
T ss_pred c-CCcEEEEcccCCCCCceeeecchhc-------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc---
Confidence 3 4679999997643332221111111 1233334445588888776553 35677887764311
Q ss_pred eEeEeeccCCceeeeEEEEeeeeec--c-CCCEEEEEeC---CCcEEEEECCCC-Cccc------eeee---cCCCCCeE
Q 010871 406 TFRCSLKLAPRVHSIRASFCPLLSL--E-KGEYIVAGSE---DSNVYFYDLAKP-KHSC------VNKL---QGHRFPVV 469 (498)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~gs~---dg~I~iwd~~~~-~~~~------~~~~---~~h~~~V~ 469 (498)
..+..+.++|..+... + ...+++.+.. .+.++|.++... .... +..+ .+-.+-..
T Consensus 193 ---------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPV 263 (365)
T 2xzh_A 193 ---------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 263 (365)
T ss_dssp ---------EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEE
T ss_pred ---------ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceE
Confidence 1122223344332221 0 1123333322 258999998543 1111 1111 11234466
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEeecCCCC
Q 010871 470 AVAWNHGENLLASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 470 ~l~~sp~~~~l~s~~~Dg~i~iW~~~~~s 498 (498)
++..++....+..-..-|.|++||+++++
T Consensus 264 amqvs~kygviyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 264 AMQISEKHDVVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred EEEecccCCEEEEEeCCcEEEEEEcccCc
Confidence 78888888889999999999999999874
No 295
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.69 E-value=0.0037 Score=57.40 Aligned_cols=226 Identities=10% Similarity=0.081 Sum_probs=115.0
Q ss_pred CCEEEEEe-CC-----CcEEEEECCCCcEEEEEecCC--CeEEEEEEcCCCcEEEEEeCC-----CcEEEEEcCCCc---
Q 010871 243 NQYIASSS-MD-----KTVRVWELTKGDCIRVIYGVS--SQLCIRFHPVNNNFLSVGNAN-----KEITVFNFSTGR--- 306 (498)
Q Consensus 243 ~~~l~s~s-~d-----g~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~--- 306 (498)
+..++.|+ .+ ..+.++|..+.+....-.... .-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 44555555 22 368888888775433211111 11122222 45677777754 468999998776
Q ss_pred EEEEe--ecCC-CeEEEEEcCCCCEEEEEcCCC-----eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC
Q 010871 307 IIKKL--VVDS-EVTSMDHDHTGQLLFCGDAQG-----CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA 378 (498)
Q Consensus 307 ~~~~~--~~~~-~i~~l~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~ 378 (498)
-...- .... ....+.+ ++.+++.|+.++ .+.+||....+-....... ... .. .++.. .
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p----~~r-~~-~~~~~------~ 158 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ----TAR-EG-AGLVV------A 158 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS----SCC-BS-CEEEE------E
T ss_pred eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC----CCc-cc-ceEEE------E
Confidence 33222 2111 1222222 567777776543 5778887654322211110 000 00 11111 3
Q ss_pred CCcEEEEEEcC-----CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC-----CcEEEE
Q 010871 379 GGPVLLTCTQD-----GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED-----SNVYFY 448 (498)
Q Consensus 379 ~~~~l~t~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----g~I~iw 448 (498)
++.+++.|+.+ ..+.+||..+.. ...............+.. -++.+++.|+.+ ..+.+|
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~-----W~~~~~~p~~r~~~~~~~------~~~~i~v~GG~~~~~~~~~v~~y 227 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGH-----WTNVTPMATKRSGAGVAL------LNDHIYVVGGFDGTAHLSSVEAY 227 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE-----EEEECCCSSCCBSCEEEE------ETTEEEEECCBCSSSBCCCEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCc-----EEeCCCCCcccccceEEE------ECCEEEEEeCCCCCcccceEEEE
Confidence 57777777755 357888876542 111111222211111111 167788888764 469999
Q ss_pred ECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEeecCCC
Q 010871 449 DLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY-----GIVIVWKRAKT 497 (498)
Q Consensus 449 d~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-----g~i~iW~~~~~ 497 (498)
|+.+.+...+..+.........+.+ ++++++.|+.+ ..|.+||+++.
T Consensus 228 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 228 NIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred eCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 9998765444433322222233333 56777888765 35778887653
No 296
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.62 E-value=0.0072 Score=55.39 Aligned_cols=231 Identities=10% Similarity=0.091 Sum_probs=115.4
Q ss_pred CCCEEEEEe-CC-----CcEEEEEcCCCCceeEEee---cCCCCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCCc
Q 010871 199 SSDLLAYGA-SD-----GTLTVCTVSDPPKVIKLLN---GHSKDVTDFDFSSNNQYIASSSMD-----KTVRVWELTKGD 264 (498)
Q Consensus 199 ~~~~lasg~-~d-----g~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~s~s~d-----g~v~iwd~~~~~ 264 (498)
++.+++.|+ .+ ..+.+||..+ .+ -..+. .......++. .++..++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~-~~-W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKT-QE-WSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTT-TE-EEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCC-Ce-EEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 445666666 22 3688888876 22 22221 1111112222 356677777754 368899988776
Q ss_pred ---EEEEEecC--CCeEEEEEEcCCCcEEEEEeCC-----CcEEEEEcCCCcEEEEee--cCCCeEEEEEcCCCCEEEEE
Q 010871 265 ---CIRVIYGV--SSQLCIRFHPVNNNFLSVGNAN-----KEITVFNFSTGRIIKKLV--VDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 265 ---~~~~~~~~--~~v~~i~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~ 332 (498)
....-... ..-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-. ....-.+++. -++.+++.|
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~G 166 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLG 166 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEEC
T ss_pred CCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEEC
Confidence 33321111 111122332 45677777644 358899988765433222 2211112222 256777777
Q ss_pred cCC-----CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC-----CcEEEEEcccccc
Q 010871 333 DAQ-----GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD-----GNLSFFSVALEIQ 402 (498)
Q Consensus 333 ~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d-----g~i~iwd~~~~~~ 402 (498)
+.+ ..+.+||+...+-...... ....... ++.. .++.+++.|+.+ ..+.+||+.+..
T Consensus 167 G~~~~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~-~~~~------~~~~i~v~GG~~~~~~~~~v~~yd~~~~~- 233 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTGHWTNVTPM-----ATKRSGA-GVAL------LNDHIYVVGGFDGTAHLSSVEAYNIRTDS- 233 (301)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEEECCC-----SSCCBSC-EEEE------ETTEEEEECCBCSSSBCCCEEEEETTTTE-
T ss_pred CCCCCcccceEEEEeCCCCcEEeCCCC-----Ccccccc-eEEE------ECCEEEEEeCCCCCcccceEEEEeCCCCc-
Confidence 654 3578888765432222111 0000111 1111 356777777764 468889887542
Q ss_pred ceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC-----CcEEEEECCCCCcccee
Q 010871 403 GYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED-----SNVYFYDLAKPKHSCVN 459 (498)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----g~I~iwd~~~~~~~~~~ 459 (498)
...............+.. -++++++.|+.+ ..|.+||+.+.+...+.
T Consensus 234 ----W~~~~~~p~~r~~~~~~~------~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 285 (301)
T 2vpj_A 234 ----WTTVTSMTTPRCYVGATV------LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVT 285 (301)
T ss_dssp ----EEEECCCSSCCBSCEEEE------ETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEE
T ss_pred ----EEECCCCCCcccceeEEE------ECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcC
Confidence 111111221111111111 167788888765 35889999876654443
No 297
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.60 E-value=0.0075 Score=55.32 Aligned_cols=225 Identities=12% Similarity=0.132 Sum_probs=112.7
Q ss_pred CEEEEEeCC----CcEEEEECCCCcEEEEEecCCC--eEEEEEEcCCCcEEEEEeCC-----CcEEEEEcCCCcEEEEee
Q 010871 244 QYIASSSMD----KTVRVWELTKGDCIRVIYGVSS--QLCIRFHPVNNNFLSVGNAN-----KEITVFNFSTGRIIKKLV 312 (498)
Q Consensus 244 ~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~--v~~i~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~ 312 (498)
..++.|+.+ ..+.++|+.+.+....-..... -.+++.. ++.+++.|+.+ ..+.+||..+.+-...-.
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 344455432 3578888887753332111111 1122222 45677777754 358899988776433322
Q ss_pred --cCC-CeEEEEEcCCCCEEEEEcCCC-----eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEE
Q 010871 313 --VDS-EVTSMDHDHTGQLLFCGDAQG-----CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLL 384 (498)
Q Consensus 313 --~~~-~i~~l~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~ 384 (498)
... ....+.+ ++.+++.|+.++ .+.+||+...+-...... ...... .++.. .++.+++
T Consensus 95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~-~~~~~------~~~~iyv 160 (302)
T 2xn4_A 95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM-----NTRRSS-VGVGV------VGGLLYA 160 (302)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC-----SSCCBS-CEEEE------ETTEEEE
T ss_pred CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC-----CCcccC-ceEEE------ECCEEEE
Confidence 111 1222222 567777776553 467777654432221111 101111 11111 3566677
Q ss_pred EEEcC-------CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC-----CcEEEEECCC
Q 010871 385 TCTQD-------GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED-----SNVYFYDLAK 452 (498)
Q Consensus 385 t~s~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----g~I~iwd~~~ 452 (498)
.|+.+ ..+.+||..+.. ...............+.. -++.+++.|+.+ ..+.+||+.+
T Consensus 161 ~GG~~~~~~~~~~~~~~yd~~~~~-----W~~~~~~p~~r~~~~~~~------~~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 161 VGGYDVASRQCLSTVECYNATTNE-----WTYIAEMSTRRSGAGVGV------LNNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp ECCEETTTTEECCCEEEEETTTTE-----EEEECCCSSCCBSCEEEE------ETTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred EeCCCCCCCccccEEEEEeCCCCc-----EEECCCCccccccccEEE------ECCEEEEECCCCCCcccceEEEEeCCC
Confidence 66643 347788886542 111111222211111111 167888888764 3699999988
Q ss_pred CCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEeecCCC
Q 010871 453 PKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYG-----IVIVWKRAKT 497 (498)
Q Consensus 453 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg-----~i~iW~~~~~ 497 (498)
.+...+..+......-..+.+ ++.+++.|+.++ .|.+||+++.
T Consensus 230 ~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 230 NAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 765444433322222222222 577888887654 4888887653
No 298
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.60 E-value=0.0097 Score=54.70 Aligned_cols=224 Identities=14% Similarity=0.187 Sum_probs=116.1
Q ss_pred EEEEEeC--CCcEEEEECCCCcEEEEEecCC--CeEEEEEEcCCCcEEEEEeCC----CcEEEEEcCCCcEEEEee--cC
Q 010871 245 YIASSSM--DKTVRVWELTKGDCIRVIYGVS--SQLCIRFHPVNNNFLSVGNAN----KEITVFNFSTGRIIKKLV--VD 314 (498)
Q Consensus 245 ~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~--~~ 314 (498)
+++.|+. ...+.+||..+++-...-.... .-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-. ..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4555554 3568889988776433211111 11122222 45677777754 678899998875433322 11
Q ss_pred C-CeEEEEEcCCCCEEEEEcCC------CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE
Q 010871 315 S-EVTSMDHDHTGQLLFCGDAQ------GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT 387 (498)
Q Consensus 315 ~-~i~~l~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s 387 (498)
. ....+.+ ++.+++.|+.+ ..+.+||....+-....... ........+. .++.+++.|+
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p-----~~r~~~~~~~-------~~~~iyv~GG 157 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML-----TQRCSHGMVE-------ANGLIYVCGG 157 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS-----SCCBSCEEEE-------ETTEEEEECC
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc-----CCcceeEEEE-------ECCEEEEECC
Confidence 1 1222222 56677777755 35888887654322211110 0000111111 3566666665
Q ss_pred c---------CCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC-----CcEEEEECCCC
Q 010871 388 Q---------DGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED-----SNVYFYDLAKP 453 (498)
Q Consensus 388 ~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----g~I~iwd~~~~ 453 (498)
. -..+.+||..+.. ...............+.. -++++++.|+.+ ..+.+||+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~yd~~~~~-----W~~~~~~p~~r~~~~~~~------~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 158 SLGNNVSGRVLNSCEVYDPATET-----WTELCPMIEARKNHGLVF------VKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EESCTTTCEECCCEEEEETTTTE-----EEEECCCSSCCBSCEEEE------ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCCCCCcccccceEEEeCCCCCe-----EEECCCccchhhcceEEE------ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 4 3447788887542 111112222221111111 167777777654 36899999987
Q ss_pred CccceeeecCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEeecCCC
Q 010871 454 KHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY-----GIVIVWKRAKT 497 (498)
Q Consensus 454 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-----g~i~iW~~~~~ 497 (498)
+...+..+.........+.+ ++.+++.|+.+ ..+.+||+++.
T Consensus 227 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 227 EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred cEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 65544444333333333443 57788888854 56888887653
No 299
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.58 E-value=0.019 Score=52.62 Aligned_cols=233 Identities=9% Similarity=0.077 Sum_probs=117.5
Q ss_pred CCEEEEEeC--CCcEEEEEcCCCCceeEEee---cCCCCeEEEEEccCCCEEEEEeCC----CcEEEEECCCCcEEEEEe
Q 010871 200 SDLLAYGAS--DGTLTVCTVSDPPKVIKLLN---GHSKDVTDFDFSSNNQYIASSSMD----KTVRVWELTKGDCIRVIY 270 (498)
Q Consensus 200 ~~~lasg~~--dg~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~ 270 (498)
+.+++.|+. ...+.+||..+ .+ -..+. .....-.++. -++..++.|+.+ ..+.++|..+.+....-.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~-~~-W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKD-YS-WTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTT-TE-EEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred ceEEEEeCCCCCceEEEecCCC-CC-EecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 345556654 35688888876 22 11221 1111112222 256677777754 568889988876543322
Q ss_pred cCCC--eEEEEEEcCCCcEEEEEeCC------CcEEEEEcCCCcEEEEee--cCCCeEEEEEcCCCCEEEEEcC------
Q 010871 271 GVSS--QLCIRFHPVNNNFLSVGNAN------KEITVFNFSTGRIIKKLV--VDSEVTSMDHDHTGQLLFCGDA------ 334 (498)
Q Consensus 271 ~~~~--v~~i~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~------ 334 (498)
.... -.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-. ....-.+++. -++.+++.|+.
T Consensus 88 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 88 PPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTT
T ss_pred CCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCc
Confidence 2211 1122222 45677777655 468999998876433322 1111112222 25666677653
Q ss_pred ---CCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC-----CcEEEEEccccccceee
Q 010871 335 ---QGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD-----GNLSFFSVALEIQGYLT 406 (498)
Q Consensus 335 ---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d-----g~i~iwd~~~~~~~~~~ 406 (498)
...+.+||+...+-...... ...... .++.. -++.+++.|+.+ ..+.+||..+..
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~-----p~~r~~-~~~~~------~~~~i~v~GG~~~~~~~~~~~~yd~~~~~----- 227 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPM-----IEARKN-HGLVF------VKDKIFAVGGQNGLGGLDNVEYYDIKLNE----- 227 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCC-----SSCCBS-CEEEE------ETTEEEEECCEETTEEBCCEEEEETTTTE-----
T ss_pred ccccceEEEeCCCCCeEEECCCc-----cchhhc-ceEEE------ECCEEEEEeCCCCCCCCceEEEeeCCCCc-----
Confidence 34577888765432222111 000000 11111 256677777654 357888887542
Q ss_pred EeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC-----CcEEEEECCCCCccceeeec
Q 010871 407 FRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED-----SNVYFYDLAKPKHSCVNKLQ 462 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----g~I~iwd~~~~~~~~~~~~~ 462 (498)
+..............+.. -++.+++.|+.+ ..+.+||+.+.+...+..+.
T Consensus 228 W~~~~~~p~~r~~~~~~~------~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 282 (306)
T 3ii7_A 228 WKMVSPMPWKGVTVKCAA------VGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR 282 (306)
T ss_dssp EEECCCCSCCBSCCEEEE------ETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred EEECCCCCCCccceeEEE------ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence 121112222211111111 167888888754 46899999987665554444
No 300
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.53 E-value=0.16 Score=55.44 Aligned_cols=155 Identities=12% Similarity=0.141 Sum_probs=83.5
Q ss_pred cccEEEEEEecCC-----CCEEEEEeC-CCcEEEEEcCCCCceeEEee-cCCCCeEEEEEc--cCCCEEEEEeCCCcEEE
Q 010871 187 KAAVTILKFGHMS-----SDLLAYGAS-DGTLTVCTVSDPPKVIKLLN-GHSKDVTDFDFS--SNNQYIASSSMDKTVRV 257 (498)
Q Consensus 187 ~~~V~~v~~sp~~-----~~~lasg~~-dg~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~s--~~~~~l~s~s~dg~v~i 257 (498)
.+.|.|+++.|.. ++++|.|.. |++|+|+++.+ .+.+.... +-.....++.+. ....+|..|-.||.+.-
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~-l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS-FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT-CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC-CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 4579999998632 479999997 99999999986 44443322 112234444443 23357889999998765
Q ss_pred EEC--CCCcEEEE---EecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeE-EEEEcCCC--CEE
Q 010871 258 WEL--TKGDCIRV---IYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVT-SMDHDHTG--QLL 329 (498)
Q Consensus 258 wd~--~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~-~l~~~~~~--~~l 329 (498)
+.+ .+|+.... +-+..++.-..+...+...+++.+ +....++--. ++....--....+. ...|+... .-+
T Consensus 632 ~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~ 709 (1158)
T 3ei3_A 632 FGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSL 709 (1158)
T ss_dssp EEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEE
T ss_pred EEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcE
Confidence 554 45544322 223345544444443444444443 4444455433 33322211122333 33354322 344
Q ss_pred EEEcCCCeEEEEEccC
Q 010871 330 FCGDAQGCIYSISMES 345 (498)
Q Consensus 330 ~~~~~dg~i~i~d~~~ 345 (498)
+..+ ++.+++..++.
T Consensus 710 v~~~-~~~LrI~~i~~ 724 (1158)
T 3ei3_A 710 ALAN-NSTLTIGTIDE 724 (1158)
T ss_dssp EEEC-SSCEEEEEECC
T ss_pred EEEc-CCceEEEEecc
Confidence 4444 44588887754
No 301
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.48 E-value=0.019 Score=55.75 Aligned_cols=199 Identities=11% Similarity=0.092 Sum_probs=107.1
Q ss_pred CeEEEEEEcC--CCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcCC---C-eEEEEEccCCc
Q 010871 274 SQLCIRFHPV--NNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQ---G-CIYSISMESHS 347 (498)
Q Consensus 274 ~v~~i~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d---g-~i~i~d~~~~~ 347 (498)
....+++.|+ ++.+++ +...+.|+.+|..+++.............++++++|+++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~-- 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYW-VGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS-- 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEE-ECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG--
T ss_pred CCceEEEccccCCCEEEE-EeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC--
Confidence 4568899984 344444 434489999999888776665656679999999999944443321 1 133332211
Q ss_pred ccccccccccccCCCccceeeEEEeEeeEcC-CCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEee
Q 010871 348 GALSRSHRHRTTGKRKCPVTTVQYRSFSLLA-GGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426 (498)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~-~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (498)
....... ......... +++++ ++.++++-..++.|+.++...+.... ............ .
T Consensus 217 -~~~~~~~----~~~~~~P~g-----iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~----~~~~~~~~~~~~-----~ 277 (433)
T 4hw6_A 217 -GFTERLS----LCNARGAKT-----CAVHPQNGKIYYTRYHHAMISSYDPATGTLTE----EEVMMDTKGSNF-----H 277 (433)
T ss_dssp -TTCCEEE----EEECSSBCC-----CEECTTTCCEEECBTTCSEEEEECTTTCCEEE----EEEECSCCSSCE-----E
T ss_pred -Ceecccc----ccccCCCCE-----EEEeCCCCeEEEEECCCCEEEEEECCCCeEEE----EEeccCCCCCcc-----c
Confidence 0000000 000111122 34447 66666666677889888876332100 001111111111 2
Q ss_pred eeeccCCCEEE-EEeCCCcEEEEECCC--CCccceeeecCC---------------CCCeEEEEE---------cCCCCE
Q 010871 427 LLSLEKGEYIV-AGSEDSNVYFYDLAK--PKHSCVNKLQGH---------------RFPVVAVAW---------NHGENL 479 (498)
Q Consensus 427 ~~~~~~~~~l~-~gs~dg~I~iwd~~~--~~~~~~~~~~~h---------------~~~V~~l~~---------sp~~~~ 479 (498)
++++++|++|+ +-...+.|+.++... +.......+.+. -.....+++ .+++.+
T Consensus 278 ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l 357 (433)
T 4hw6_A 278 IVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF 357 (433)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE
T ss_pred EEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE
Confidence 34445898554 445568899988763 211111112111 123677999 677777
Q ss_pred EEEEeCCCeEEEeec
Q 010871 480 LASSDLYGIVIVWKR 494 (498)
Q Consensus 480 l~s~~~Dg~i~iW~~ 494 (498)
.++-...+.|+.++.
T Consensus 358 yvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 358 YFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEETTTTEEEEECT
T ss_pred EEEECCCCEEEEECC
Confidence 776666788888874
No 302
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.47 E-value=0.058 Score=49.62 Aligned_cols=229 Identities=8% Similarity=0.018 Sum_probs=113.2
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC----C-------CcEEEEECCCCcEEEEEe
Q 010871 202 LLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM----D-------KTVRVWELTKGDCIRVIY 270 (498)
Q Consensus 202 ~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~----d-------g~v~iwd~~~~~~~~~~~ 270 (498)
+++.|+ ..+.+||..+..-....+..............++..++.|+. + ..+.+||..+.+-...-.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 445555 568899988733222222222222233333456777777773 1 126788888776432211
Q ss_pred cCCCeE--EEEEEcCCCcEEEEEeCC--------CcEEEEEcCCCcEEEEee--cCCCeEEEEEcCCCCEEEEEcC-C--
Q 010871 271 GVSSQL--CIRFHPVNNNFLSVGNAN--------KEITVFNFSTGRIIKKLV--VDSEVTSMDHDHTGQLLFCGDA-Q-- 335 (498)
Q Consensus 271 ~~~~v~--~i~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~-d-- 335 (498)
...+.. +++.. ++.+++.|+.+ ..+.+||+.+.+-...-. ....-.+++. -++++++.|+. +
T Consensus 85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTS
T ss_pred CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCC
Confidence 111111 22222 45677777632 458999998775432221 1111122222 35567777765 2
Q ss_pred ---CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC-----cEEEEEccccccceeeE
Q 010871 336 ---GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG-----NLSFFSVALEIQGYLTF 407 (498)
Q Consensus 336 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg-----~i~iwd~~~~~~~~~~~ 407 (498)
..+.+||....+-...... ...... .++.. .++.+++.|+.++ .+.+||..+.. .
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~-----p~~r~~-~~~~~------~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-----W 224 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPM-----QTARSL-FGATV------HDGRIIVAAGVTDTGLTSSAEVYSITDNK-----W 224 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCC-----SSCCBS-CEEEE------ETTEEEEEEEECSSSEEEEEEEEETTTTE-----E
T ss_pred cccceEEEEeCCCCeEEECCCC-----CCchhc-eEEEE------ECCEEEEEeccCCCCccceEEEEECCCCe-----E
Confidence 3588888765432221111 000000 11111 3577888887765 47778876541 1
Q ss_pred eEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC--------------CcEEEEECCCCCccce
Q 010871 408 RCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED--------------SNVYFYDLAKPKHSCV 458 (498)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d--------------g~I~iwd~~~~~~~~~ 458 (498)
..............+.. -++++++.|+.+ ..|.+||+.+.+...+
T Consensus 225 ~~~~~~p~~r~~~~~~~------~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 225 APFEAFPQERSSLSLVS------LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEECCCSSCCBSCEEEE------ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EECCCCCCcccceeEEE------ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 11111222111111111 167777877763 2478899888665433
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.46 E-value=0.052 Score=51.39 Aligned_cols=221 Identities=14% Similarity=0.166 Sum_probs=129.9
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEE
Q 010871 253 KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~ 332 (498)
..|.|-|+..+..+....- ..-+...+|.. ++++.-. ..++.|+|+++.+.+..+.....|.-=.|-.+. .|+..
T Consensus 48 ~~vvIiDl~~~~~~~rrpi--~AdsAIMnP~~-~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~-~l~lV 122 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPI--SADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALV 122 (494)
T ss_dssp CEEEEEETTSTTSCEEEEC--CCSEEEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT-EEEEE
T ss_pred CeEEEEECCCCCcceeccc--ccceeeeCCCC-cEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC-eEEEE
Confidence 4688888887654322211 11245567743 5555553 789999999999999999887787777776543 44444
Q ss_pred cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-------CCcEEEEEcccccccee
Q 010871 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-------DGNLSFFSVALEIQGYL 405 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-------dg~i~iwd~~~~~~~~~ 405 (498)
+ +..|+.|++...........+...+ ...++..+..+++.++++..+- .|.+.+|.++....
T Consensus 123 T-~taVyHWsi~~~s~P~kvFdR~~~L-------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--- 191 (494)
T 1bpo_A 123 T-DNAVYHWSMEGESQPVKMFDRHSSL-------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--- 191 (494)
T ss_dssp C-SSEEEEEESSSSCCCEEEEECCGGG-------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE---
T ss_pred c-CCeeEEecccCCCCchhheecchhc-------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc---
Confidence 3 5679999997643332221111111 1233334445588998876542 36677887764311
Q ss_pred eEeEeeccCCceeeeEEEEeeeeecc---CCCEEEEEeCC---CcEEEEECCCC-Ccc-c-----eeee---cCCCCCeE
Q 010871 406 TFRCSLKLAPRVHSIRASFCPLLSLE---KGEYIVAGSED---SNVYFYDLAKP-KHS-C-----VNKL---QGHRFPVV 469 (498)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~gs~d---g~I~iwd~~~~-~~~-~-----~~~~---~~h~~~V~ 469 (498)
..+..+.++|..+.... ...+++.+... +.++|.++... ... . +..+ ..-.+-..
T Consensus 192 ---------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv 262 (494)
T 1bpo_A 192 ---------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (494)
T ss_dssp ---------EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred ---------chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence 11222333443322210 11234444432 78999998653 110 0 1111 11234467
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEeecCCCC
Q 010871 470 AVAWNHGENLLASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 470 ~l~~sp~~~~l~s~~~Dg~i~iW~~~~~s 498 (498)
++..++....+..-..-|.|+++|+++++
T Consensus 263 amqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred EEEecccCCEEEEEecCceEEEEecccce
Confidence 88889888899999999999999999874
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.44 E-value=0.13 Score=52.32 Aligned_cols=225 Identities=7% Similarity=-0.018 Sum_probs=132.7
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeEEee-cCCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCcEEEEEecC-CCeEEE
Q 010871 202 LLAYGASDGTLTVCTVSDPPKVIKLLN-GHSKDVTDFDFSSNNQYIA-SSSMDKTVRVWELTKGDCIRVIYGV-SSQLCI 278 (498)
Q Consensus 202 ~lasg~~dg~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~i 278 (498)
+|+.+ ....|+..++.. ......+. ..-..+..|+|.+.+..|+ +-..++.|..+++........+... ..+..+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~-~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLET-NNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSC-TTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCC-CCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 44444 356788899876 33322222 2345688999998665555 5556788999998765444444332 356688
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe-ecCCCeEEEEEcCCCCEEEEEc--CCCeEEEEEccCCccccccccc
Q 010871 279 RFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL-VVDSEVTSMDHDHTGQLLFCGD--AQGCIYSISMESHSGALSRSHR 355 (498)
Q Consensus 279 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~ 355 (498)
++.+.++++.++-...+.|.+.++........+ ..-.....++++|....|+... ..+.|...+++........
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~--- 162 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV--- 162 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE---
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE---
Confidence 888777778787777889999998654432222 3345678999998666666554 2567888877654322211
Q ss_pred ccccCCCccceeeEEEeEeeEcCCCcEEEEE-EcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCC
Q 010871 356 HRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC-TQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGE 434 (498)
Q Consensus 356 ~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (498)
........+.+. +++..|+.+ ...+.|..+|+..... . ... ........+ ++. .+.
T Consensus 163 -----~~~~~P~GlalD-----~~~~~LY~aD~~~~~I~~~d~dG~~~-~-v~~---~~l~~P~gl--av~------~~~ 219 (628)
T 4a0p_A 163 -----PNVGRANGLTID-----YAKRRLYWTDLDTNLIESSNMLGLNR-E-VIA---DDLPHPFGL--TQY------QDY 219 (628)
T ss_dssp -----CSCSSEEEEEEE-----TTTTEEEEEETTTTEEEEEETTSCSC-E-EEE---ECCSCEEEE--EEE------TTE
T ss_pred -----CCCCCcceEEEc-----cccCEEEEEECCCCEEEEEcCCCCce-E-Eee---ccCCCceEE--EEE------CCE
Confidence 111223444443 766655555 4567888888865322 1 111 111111112 221 345
Q ss_pred EEEEEeCCCcEEEEECCCCC
Q 010871 435 YIVAGSEDSNVYFYDLAKPK 454 (498)
Q Consensus 435 ~l~~gs~dg~I~iwd~~~~~ 454 (498)
++++-...+.|...|..+++
T Consensus 220 ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 220 IYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEecCCCCEEEEEECCCCC
Confidence 55555557888888876653
No 305
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.42 E-value=0.078 Score=49.16 Aligned_cols=270 Identities=9% Similarity=0.016 Sum_probs=133.2
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee----cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN----GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTK 262 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~----~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~ 262 (498)
...+.+|.|.+ .+..+|+ +.+|.| +...+. ++.-.... .....+.+|.|.+ + .++.++.++.|.. ..+.
T Consensus 35 ~~~~~~v~~~~-~~~~~~~-G~~g~i-~~s~Dg-G~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~Dg 107 (327)
T 2xbg_A 35 TATILDMSFID-RHHGWLV-GVNATL-METRDG-GQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDG 107 (327)
T ss_dssp SSCEEEEEESS-SSCEEEE-ETTTEE-EEESST-TSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESST
T ss_pred CCcEEEEEECC-CCcEEEE-cCCCeE-EEeCCC-CCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCC
Confidence 34689999976 6666764 556754 333332 33222221 1244688999976 4 3444555664433 3333
Q ss_pred CcEEEEEec----CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEe--ecCCCeEEEEEcCCCCEEEEEcCCC
Q 010871 263 GDCIRVIYG----VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKL--VVDSEVTSMDHDHTGQLLFCGDAQG 336 (498)
Q Consensus 263 ~~~~~~~~~----~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~dg 336 (498)
|+.-..+.. ...+..+.+.++ +.+++++ .+|.|.. ....|+.-... .....+..+.+.+++.+++++...+
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~ 184 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGN-GSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGS 184 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEET-TEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSS
T ss_pred CCCceECccccCCCCCeEEEEEECC-CCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCc
Confidence 443333221 134566776653 3455544 4564422 22234333333 2445788999999988887775444
Q ss_pred eEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEee-c-cC
Q 010871 337 CIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSL-K-LA 414 (498)
Q Consensus 337 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~-~-~~ 414 (498)
..+..|-.... ..... ......+..+.+ .+++..+ .++.+|.+.+.+...+. ...... . ..
T Consensus 185 ~~~S~d~gG~t--W~~~~-----~~~~~~~~~~~~-----~~~g~~~-~~~~~G~~~~s~~D~G~----tW~~~~~~~~~ 247 (327)
T 2xbg_A 185 FYSTWEPGQTA--WEPHN-----RTTSRRLHNMGF-----TPDGRLW-MIVNGGKIAFSDPDNSE----NWGELLSPLRR 247 (327)
T ss_dssp EEEEECTTCSS--CEEEE-----CCSSSCEEEEEE-----CTTSCEE-EEETTTEEEEEETTEEE----EECCCBCTTSS
T ss_pred EEEEeCCCCCc--eeECC-----CCCCCccceeEE-----CCCCCEE-EEeCCceEEEecCCCCC----eeEeccCCccc
Confidence 33333211111 11100 112233444444 3777654 55667877766322110 111100 0 01
Q ss_pred CceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec---CCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 010871 415 PRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ---GHRFPVVAVAWNHGENLLASSDLYGIVIV 491 (498)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~~~Dg~i~i 491 (498)
.......+.+. +++.+++++. +|.| ++..+.++ .-..+. .....+.++.|.+++ .++.++.+|.|.-
T Consensus 248 ~~~~~~~v~~~-----~~~~~~~~g~-~g~i-~~S~DgG~--tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 248 NSVGFLDLAYR-----TPNEVWLAGG-AGAL-LCSQDGGQ--TWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLR 317 (327)
T ss_dssp CCSCEEEEEES-----SSSCEEEEES-TTCE-EEESSTTS--SCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEE
T ss_pred CCcceEEEEec-----CCCEEEEEeC-CCeE-EEeCCCCc--ccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEE
Confidence 11111222333 3666666554 6766 34444432 122222 234568889887554 4666778898876
Q ss_pred ee
Q 010871 492 WK 493 (498)
Q Consensus 492 W~ 493 (498)
++
T Consensus 318 ~~ 319 (327)
T 2xbg_A 318 YV 319 (327)
T ss_dssp EC
T ss_pred Ec
Confidence 65
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.39 E-value=0.15 Score=51.80 Aligned_cols=297 Identities=10% Similarity=0.026 Sum_probs=154.2
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC--CCcEEEEECCCCcE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM--DKTVRVWELTKGDC 265 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~--dg~v~iwd~~~~~~ 265 (498)
.....|++.+.++.+.++-...+.|.+.++.. ......+...-.....|++.|.+.+|+.+.. .+.|...++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCC-CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 46788999985555666666788999999975 3222233344456788999997656655543 35666667664333
Q ss_pred EEEEe-cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEc
Q 010871 266 IRVIY-GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDAQGCIYSISM 343 (498)
Q Consensus 266 ~~~~~-~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~ 343 (498)
..... .......+++.++++.+.++-...+.|...|+.......... .......+++..+ .++++-...+.|...|.
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~ 241 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNK 241 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEES
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEEC
Confidence 22232 234678999999777777777777889999986543322221 1222346677654 44445456677888876
Q ss_pred cCCcccccc------------ccccccc-CCC-------ccceeeEE------EeE-----eeEcCCC-------cEEEE
Q 010871 344 ESHSGALSR------------SHRHRTT-GKR-------KCPVTTVQ------YRS-----FSLLAGG-------PVLLT 385 (498)
Q Consensus 344 ~~~~~~~~~------------~~~~~~~-~~~-------~~~i~~~~------~~~-----~~~s~~~-------~~l~t 385 (498)
.+....... .+..... ... .+.-.|+. +.+ +.+.+++ ..++.
T Consensus 242 ~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll 321 (619)
T 3s94_A 242 YTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLL 321 (619)
T ss_dssp SSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEE
T ss_pred CCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEE
Confidence 443211000 0000000 000 00001110 111 1111221 12222
Q ss_pred EEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCC
Q 010871 386 CTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHR 465 (498)
Q Consensus 386 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~ 465 (498)
.+..+.|+..++........ ..............|.+ .++.++++-...+.|+.+++...... ..+...-
T Consensus 322 ~~~~~~i~~i~l~~~~~~~~----~~~~~~l~~~~~ld~d~----~~~~ly~sD~~~~~I~r~~~~g~~~~--~v~~~~~ 391 (619)
T 3s94_A 322 LARRTDLRRISLDTPDFTDI----VLQLEDIRHAIAIDYDP----VEGYIYWTDDEVRAIRRSFIDGSGSQ--FVVTAQI 391 (619)
T ss_dssp EEESSCEEEEESSSTTCCCE----ECCCSCCSSEEEEEEET----TTTEEEEEETTTTEEEEEETTSCSCE--EEECSSC
T ss_pred EEcccceEEEecCCCcccee----EEeccccCccEEEEEEc----CCCeEEEEeCCCCeEEEEEcCCCccE--EEEECCC
Confidence 33445666666654321111 11111222233345554 24455555556788999998764322 2223333
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEeecCC
Q 010871 466 FPVVAVAWNHGEN-LLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 466 ~~V~~l~~sp~~~-~l~s~~~Dg~i~iW~~~~ 496 (498)
..+..+++...+. +.++-+..+.|.+.++++
T Consensus 392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G 423 (619)
T 3s94_A 392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG 423 (619)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCcCceEEecccCcEEEEeCCCCcEEEEeCCC
Confidence 5677899986544 444545567888887764
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.37 E-value=0.04 Score=50.34 Aligned_cols=227 Identities=12% Similarity=0.166 Sum_probs=111.6
Q ss_pred CCEEEEEeCC----CcEEEEEcCCCCceeEEeec---CCCCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCCcEEE
Q 010871 200 SDLLAYGASD----GTLTVCTVSDPPKVIKLLNG---HSKDVTDFDFSSNNQYIASSSMD-----KTVRVWELTKGDCIR 267 (498)
Q Consensus 200 ~~~lasg~~d----g~i~iwd~~~~~~~~~~~~~---h~~~V~~l~~s~~~~~l~s~s~d-----g~v~iwd~~~~~~~~ 267 (498)
+.+++.|+.+ ..+.+||..+ .. -..+.. .... .+++. -++..++.|+.+ ..+.+||..+.+-..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~-~~-W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKE-ER-WHQVAELPSRRCR-AGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTT-TE-EEEECCCSSCCBS-CEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcC-Cc-EeEcccCCccccc-ceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 3455555543 3577888876 22 222211 1111 12222 256677777654 358889988775433
Q ss_pred EEecCC--CeEEEEEEcCCCcEEEEEeCCC-----cEEEEEcCCCcEEEEee--cCCCeEEEEEcCCCCEEEEEcCC---
Q 010871 268 VIYGVS--SQLCIRFHPVNNNFLSVGNANK-----EITVFNFSTGRIIKKLV--VDSEVTSMDHDHTGQLLFCGDAQ--- 335 (498)
Q Consensus 268 ~~~~~~--~v~~i~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~d--- 335 (498)
.-.... .-.+++.. ++.+++.|+.++ .+.+||+.+.+-...-. ....-.+++. -++.+++.|+.+
T Consensus 92 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 168 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVAS 168 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTT
T ss_pred CCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCC
Confidence 221111 11122322 456777776553 57788988765443322 1111112222 256677776542
Q ss_pred ----CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC-----cEEEEEccccccceee
Q 010871 336 ----GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG-----NLSFFSVALEIQGYLT 406 (498)
Q Consensus 336 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg-----~i~iwd~~~~~~~~~~ 406 (498)
..+.+||+....-....... ..... .++.. .++.+++.|+.++ .+.+||..+..
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~~p-----~~r~~-~~~~~------~~~~iyv~GG~~~~~~~~~~~~yd~~~~~----- 231 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAEMS-----TRRSG-AGVGV------LNNLLYAVGGHDGPLVRKSVEVYDPTTNA----- 231 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECCCS-----SCCBS-CEEEE------ETTEEEEECCBSSSSBCCCEEEEETTTTE-----
T ss_pred CccccEEEEEeCCCCcEEECCCCc-----ccccc-ccEEE------ECCEEEEECCCCCCcccceEEEEeCCCCC-----
Confidence 34788887654322221111 00011 11111 3577777777653 68888887542
Q ss_pred EeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC-----cEEEEECCCCCcc
Q 010871 407 FRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS-----NVYFYDLAKPKHS 456 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg-----~I~iwd~~~~~~~ 456 (498)
...............+.. -++.+++.|+.++ .+.+||+.+.+..
T Consensus 232 W~~~~~~~~~r~~~~~~~------~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 232 WRQVADMNMCRRNAGVCA------VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEEECCCSSCCBSCEEEE------ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EeeCCCCCCccccCeEEE------ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 111111111111111111 1678888887653 4899999886543
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.30 E-value=0.0018 Score=67.10 Aligned_cols=222 Identities=9% Similarity=-0.010 Sum_probs=118.8
Q ss_pred CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCC----CcEEEEEe-cCCCeEEEEEEc
Q 010871 209 DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASS-SMDKTVRVWELTK----GDCIRVIY-GVSSQLCIRFHP 282 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-s~dg~v~iwd~~~----~~~~~~~~-~~~~v~~i~~~~ 282 (498)
.+.|++.++.. ......+. ....+..|+|.+.+..|+.+ ...+.|..+++.. ......+. ....+..+++.+
T Consensus 385 ~~~I~~id~~~-~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDR-SEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTS-CCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCC-Ccceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 35677888765 33322222 33456789999876666554 4567899999875 22211121 112344677776
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcC--CCeEEEEEccCCccccccccccccc
Q 010871 283 VNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDA--QGCIYSISMESHSGALSRSHRHRTT 359 (498)
Q Consensus 283 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~ 359 (498)
.+++++++-...+.|.++++........+. .......++++|.+..|+.+.. .+.|..++++........
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~------- 535 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV------- 535 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES-------
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE-------
Confidence 566677766667889999987554443333 2345678899987665555443 267877776543221111
Q ss_pred CCCccceeeEEEeEeeEcCCCcEE-EEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEE
Q 010871 360 GKRKCPVTTVQYRSFSLLAGGPVL-LTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVA 438 (498)
Q Consensus 360 ~~~~~~i~~~~~~~~~~s~~~~~l-~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (498)
.........+.+ ++++..| ++-+..+.|.++++...... .+............+ .+. .+.++++
T Consensus 536 ~~~l~~PnGlav-----d~~~~~LY~aD~~~~~I~~~d~dG~~~~--~~~~~~~~~~~P~gl--avd------~~~lywt 600 (699)
T 1n7d_A 536 TENIQWPNGITL-----DLLSGRLYWVDSKLHSISSIDVNGGNRK--TILEDEKRLAHPFSL--AVF------EDKVFWT 600 (699)
T ss_dssp CSSCSSCCCEEE-----CTTTCCEEEEETTTTEEEEECSSSSCCE--EECCCSSSCSSCCCC--EEE------TTEEEEE
T ss_pred eCCCCCccEEEE-----eccCCEEEEEecCCCeEEEEccCCCceE--EEEecCCcCCCceEe--EEE------CCEEEEE
Confidence 011112233444 4765544 45556678999988642111 110000000111111 221 3455556
Q ss_pred EeCCCcEEEEECCCCC
Q 010871 439 GSEDSNVYFYDLAKPK 454 (498)
Q Consensus 439 gs~dg~I~iwd~~~~~ 454 (498)
....+.|..++..+++
T Consensus 601 d~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 601 DIINEAIFSANRLTGS 616 (699)
T ss_dssp CSTTTCEEEEETTTEE
T ss_pred eCCCCeEEEEEccCCC
Confidence 5667889999987643
No 309
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.27 E-value=0.02 Score=52.59 Aligned_cols=227 Identities=12% Similarity=0.079 Sum_probs=113.4
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCcEEEEEecCC--CeEEEEEEcCCCcEEEEEeC----C-----CcEEEEEcCCCc
Q 010871 242 NNQYIASSSMD----KTVRVWELTKGDCIRVIYGVS--SQLCIRFHPVNNNFLSVGNA----N-----KEITVFNFSTGR 306 (498)
Q Consensus 242 ~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~~g~~----d-----g~i~iwd~~~~~ 306 (498)
++..++.|+.+ ..+.++|..+.+....-.... .-.+++.. ++.+++.|+. + ..+.+||+.+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 34455555532 357888887765433211111 11122322 4567777665 2 468899988775
Q ss_pred EEEEee--cC-CCeEEEEEcCCCCEEEEEcCC-----CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcC
Q 010871 307 IIKKLV--VD-SEVTSMDHDHTGQLLFCGDAQ-----GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLA 378 (498)
Q Consensus 307 ~~~~~~--~~-~~i~~l~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~ 378 (498)
-...-. .. .....+.+ ++.+++.|+.+ ..+.+||....+-....... .....- ++.. -
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-----~~r~~~-~~~~------~ 167 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML-----TRRIGV-GVAV------L 167 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS-----SCCBSC-EEEE------E
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC-----ccccce-EEEE------E
Confidence 433221 11 12222222 56677777643 35778877654322211110 000011 1111 2
Q ss_pred CCcEEEEEEcC-----CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC-----CcEEEE
Q 010871 379 GGPVLLTCTQD-----GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED-----SNVYFY 448 (498)
Q Consensus 379 ~~~~l~t~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----g~I~iw 448 (498)
++.+++.|+.+ ..+.+||+.+.. ...............+.. -++.+++.|+.+ ..+.+|
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~-----W~~~~~~p~~r~~~~~~~------~~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNE-----WRMITAMNTIRSGAGVCV------LHNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE-----EEECCCCSSCCBSCEEEE------ETTEEEEECCBCSSSBCCCEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCe-----EeeCCCCCCccccceEEE------ECCEEEEEeCCCCCCccceEEEE
Confidence 56777777654 357888876542 111111111111111111 167788888764 469999
Q ss_pred ECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEeecCCC
Q 010871 449 DLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLY-----GIVIVWKRAKT 497 (498)
Q Consensus 449 d~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-----g~i~iW~~~~~ 497 (498)
|+.+.+...+..+.........+.+ ++++++.|+.+ ..|.+||+++.
T Consensus 237 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp ETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 9998765444433322222223333 56777878754 45778887653
No 310
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.25 E-value=0.046 Score=50.20 Aligned_cols=231 Identities=11% Similarity=0.057 Sum_probs=114.9
Q ss_pred CCCEEEEEeCC----CcEEEEEcCCCCceeEEeec---CCCCeEEEEEccCCCEEEEEeC----C-----CcEEEEECCC
Q 010871 199 SSDLLAYGASD----GTLTVCTVSDPPKVIKLLNG---HSKDVTDFDFSSNNQYIASSSM----D-----KTVRVWELTK 262 (498)
Q Consensus 199 ~~~~lasg~~d----g~i~iwd~~~~~~~~~~~~~---h~~~V~~l~~s~~~~~l~s~s~----d-----g~v~iwd~~~ 262 (498)
++.+++.|+.+ ..+.+||..+ .+ -..+.. .... .+++. -++.+++.|+. + ..+.++|..+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~-~~-W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSN-GT-WLRLADLQVPRSG-LAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTT-TE-EEECCCCSSCCBS-CEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCC-Ce-EeECCCCCccccc-ceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 55677777632 3588888875 22 222211 1111 12222 25666666665 2 4688899887
Q ss_pred CcEEEEEecCC--CeEEEEEEcCCCcEEEEEeCC-----CcEEEEEcCCCcEEEEee--cC-CCeEEEEEcCCCCEEEEE
Q 010871 263 GDCIRVIYGVS--SQLCIRFHPVNNNFLSVGNAN-----KEITVFNFSTGRIIKKLV--VD-SEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 263 ~~~~~~~~~~~--~v~~i~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~--~~-~~i~~l~~~~~~~~l~~~ 332 (498)
.+....-.... .-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-. .. .....+.+ ++.+++.|
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G 175 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVG 175 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEe
Confidence 75433211111 11122222 45677776643 468899988775443222 11 11222222 56777777
Q ss_pred cCC-----CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC-----CcEEEEEcccccc
Q 010871 333 DAQ-----GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD-----GNLSFFSVALEIQ 402 (498)
Q Consensus 333 ~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d-----g~i~iwd~~~~~~ 402 (498)
+.+ ..+.+||+...+-...... ....... ++.. -++.+++.|+.+ ..+.+||+.+..
T Consensus 176 G~~~~~~~~~~~~yd~~~~~W~~~~~~-----p~~r~~~-~~~~------~~~~iyv~GG~~~~~~~~~v~~yd~~~~~- 242 (308)
T 1zgk_A 176 GFDGTNRLNSAECYYPERNEWRMITAM-----NTIRSGA-GVCV------LHNCIYAAGGYDGQDQLNSVERYDVETET- 242 (308)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEECCCC-----SSCCBSC-EEEE------ETTEEEEECCBCSSSBCCCEEEEETTTTE-
T ss_pred CCCCCCcCceEEEEeCCCCeEeeCCCC-----CCccccc-eEEE------ECCEEEEEeCCCCCCccceEEEEeCCCCc-
Confidence 654 3578888765432221111 1001111 1111 257777777765 458889887542
Q ss_pred ceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC-----CcEEEEECCCCCccceee
Q 010871 403 GYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED-----SNVYFYDLAKPKHSCVNK 460 (498)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----g~I~iwd~~~~~~~~~~~ 460 (498)
...............+.. -++++++.|+.+ ..+.+||+.+.+...+..
T Consensus 243 ----W~~~~~~p~~r~~~~~~~------~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 243 ----WTFVAPMKHRRSALGITV------HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp ----EEECCCCSSCCBSCEEEE------ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred ----EEECCCCCCCccceEEEE------ECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCC
Confidence 111111221111111111 167888888754 358899998866544433
No 311
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.25 E-value=0.22 Score=50.69 Aligned_cols=198 Identities=8% Similarity=-0.017 Sum_probs=122.8
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCcEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYI-ASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~ 266 (498)
..+..|+|++.++.++++-..++.|..+++.. ......+.........|++.+.+..| ++-...+.|.+.++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g-~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNG-SALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCC-CCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence 35789999995565666666789999999875 33333343333456788888765544 55555678999998755433
Q ss_pred EEE-ecCCCeEEEEEEcCCCcEEEEE-eCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEE-cCCCeEEEEEc
Q 010871 267 RVI-YGVSSQLCIRFHPVNNNFLSVG-NANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCG-DAQGCIYSISM 343 (498)
Q Consensus 267 ~~~-~~~~~v~~i~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~i~d~ 343 (498)
..+ ........+++.|..+.++++- +..+.|...++...........-.....|++++++..|+.+ ...+.|..+++
T Consensus 116 ~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 333 2335678999999766665554 23567888888655443334445678899999987766555 45678999988
Q ss_pred cCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 344 ESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
+........ ........+.+. . +..+++-...+.|...|..++
T Consensus 196 dG~~~~v~~--------~~l~~P~glav~-----~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 196 LGLNREVIA--------DDLPHPFGLTQY-----Q-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp TSCSCEEEE--------ECCSCEEEEEEE-----T-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCceEEee--------ccCCCceEEEEE-----C-CEEEEecCCCCEEEEEECCCC
Confidence 754332110 111112233332 2 444444445677877775543
No 312
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.20 E-value=0.11 Score=47.65 Aligned_cols=223 Identities=10% Similarity=0.078 Sum_probs=111.4
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEecC---CCeEEEEEEcCCCcEEEEEeC-----C------CcEEEEEcCCCcEEEE
Q 010871 245 YIASSSMDKTVRVWELTKGDCIRVIYGV---SSQLCIRFHPVNNNFLSVGNA-----N------KEITVFNFSTGRIIKK 310 (498)
Q Consensus 245 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~~g~~-----d------g~i~iwd~~~~~~~~~ 310 (498)
+++.|+ ..+.+||..+++-.. .... ......+.. .++.+++.|+. . ..+.+||..+.+-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344555 568999999887543 2221 111222222 25567777763 1 1277889887764322
Q ss_pred eecCCC--eEEEEEcCCCCEEEEEcCC--------CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCC
Q 010871 311 LVVDSE--VTSMDHDHTGQLLFCGDAQ--------GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGG 380 (498)
Q Consensus 311 ~~~~~~--i~~l~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~ 380 (498)
-....+ -.+++.. ++.+++.|+.+ ..+.+||....+-...... .........+. .++
T Consensus 83 ~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~~~~-------~~~ 149 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL-----PYVVYGHTVLS-------HMD 149 (315)
T ss_dssp CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC-----SSCCBSCEEEE-------ETT
T ss_pred CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC-----CCcccceeEEE-------ECC
Confidence 211111 1122222 55667777632 3578888765432211111 00011111111 356
Q ss_pred cEEEEEEc-C-----CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC-----cEEEEE
Q 010871 381 PVLLTCTQ-D-----GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS-----NVYFYD 449 (498)
Q Consensus 381 ~~l~t~s~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg-----~I~iwd 449 (498)
.+++.|+. + ..+.+||..+.. ...............+.. -++++++.|+.++ .+.+||
T Consensus 150 ~iyv~GG~~~~~~~~~~~~~yd~~~~~-----W~~~~~~p~~r~~~~~~~------~~~~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 150 LVYVIGGKGSDRKCLNKMCVYDPKKFE-----WKELAPMQTARSLFGATV------HDGRIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp EEEEECCBCTTSCBCCCEEEEETTTTE-----EEECCCCSSCCBSCEEEE------ETTEEEEEEEECSSSEEEEEEEEE
T ss_pred EEEEEeCCCCCCcccceEEEEeCCCCe-----EEECCCCCCchhceEEEE------ECCEEEEEeccCCCCccceEEEEE
Confidence 67777776 2 358888887541 111111222211111111 1678888887654 588999
Q ss_pred CCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC--------------eEEEeecCCC
Q 010871 450 LAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYG--------------IVIVWKRAKT 497 (498)
Q Consensus 450 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg--------------~i~iW~~~~~ 497 (498)
+.+.+...+..+.........+.+ ++++++.|+.++ .|.+||+++.
T Consensus 219 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 219 ITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred CCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 988765544443322222233333 567777787642 3667777653
No 313
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.20 E-value=0.39 Score=52.53 Aligned_cols=280 Identities=10% Similarity=0.054 Sum_probs=144.1
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc-----eeEEee----cCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 010871 190 VTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK-----VIKLLN----GHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL 260 (498)
Q Consensus 190 V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~-----~~~~~~----~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~ 260 (498)
+.|-+....++..++.+..+|.+.+..+...+. .+..+. +....-.++++..+| +|+.||..|.=.+|.+
T Consensus 276 i~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~~~~~~V~~l~i~~~~~~~~~ssl~~l~~g-~lFvgS~~Gds~l~~~ 354 (1158)
T 3ei3_A 276 IVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG-VVFVGSRLGDSQLVKL 354 (1158)
T ss_dssp EEEEEECSTTSSEEEEEETTCEEEEEEEEEEC-----CEEEEEEEEEEEECSCCSEEEECSTT-EEEEECSSSCEEEEEE
T ss_pred EEEEEEEecCCCEEEEEeCCCCEEEEEEEEcCCccCceeEEEEEEEEcCCccCccEEEEECCC-EEEEEEecCCcEEEEE
Confidence 344443332456777788999888766543111 222221 223334678887666 8999999888788877
Q ss_pred CCC--------cEEEEEecCCCeEEEEEEcCC----CcEEEEEe--CCCcEEEEEcCCC-cEEEEe--ecCCCeEEEEEc
Q 010871 261 TKG--------DCIRVIYGVSSQLCIRFHPVN----NNFLSVGN--ANKEITVFNFSTG-RIIKKL--VVDSEVTSMDHD 323 (498)
Q Consensus 261 ~~~--------~~~~~~~~~~~v~~i~~~~~~----~~~l~~g~--~dg~i~iwd~~~~-~~~~~~--~~~~~i~~l~~~ 323 (498)
... +.+..+..-+++..++..... ..++++++ .+|.++++.-.-+ +....+ ..-..++.+...
T Consensus 355 ~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~ 434 (1158)
T 3ei3_A 355 NVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSD 434 (1158)
T ss_dssp CSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCCSCCEEEEECCC
T ss_pred ecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCCCccEEEEEeec
Confidence 643 346667777888888776422 23444433 4577887653221 122222 233456666543
Q ss_pred ---CCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 324 ---HTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 324 ---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
....+|+++..+.+ .++.+....-... ....+.... ..+....+ . +..++=.+. ..|++++....
T Consensus 435 ~~~~~~~yLvlS~~~~T-~Vl~i~~e~veev---~~~gf~~~~---~TL~~~~l---~-~~~ivQVt~-~~Irli~~~~~ 502 (1158)
T 3ei3_A 435 PNRETDDTLVLSFVGQT-RVLMLNGEEVEET---ELMGFVDDQ---QTFFCGNV---A-HQQLIQITS-ASVRLVSQEPK 502 (1158)
T ss_dssp SSCSSCCEEEEEETTEE-EEEEEETTEEEEE---CCTTCCSSS---CEEEEEEE---T-TTEEEEEES-SCEEEEESSSC
T ss_pred CCCCCCCEEEEECCCCe-EEEEEeCCccccc---ccccccCCC---CcEEEEEc---C-CCeEEEEec-CEEEEEECCCC
Confidence 23467877777666 4444432111100 000011111 11111111 1 122332222 23555554321
Q ss_pred ccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCC----
Q 010871 401 IQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHG---- 476 (498)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~---- 476 (498)
. ...............++. ++.+++.++ ++.+.++++..+....+.... -...|.|+++.|.
T Consensus 503 ---~--~~~~w~~p~~~~I~~As~-------n~~~vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~ 568 (1158)
T 3ei3_A 503 ---A--LVSEWKEPQAKNISVASC-------NSSQVVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSN 568 (1158)
T ss_dssp ---C--EEEEECCTTCCCCCEEEE-------CSSEEEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSST
T ss_pred ---e--EEEEEECCCCCEEEEEEe-------CCCEEEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCc
Confidence 0 011111111111121121 455666665 678888888764433332222 3567999999863
Q ss_pred --CCEEEEEeC-CCeEEEeecCC
Q 010871 477 --ENLLASSDL-YGIVIVWKRAK 496 (498)
Q Consensus 477 --~~~l~s~~~-Dg~i~iW~~~~ 496 (498)
+.+++.|.. |++|+|+++..
T Consensus 569 ~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 569 GLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp TCCSEEEEEETTTTEEEEEETTT
T ss_pred ccccEEEEEECCCCEEEEEECCC
Confidence 469999997 99999999864
No 314
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.18 E-value=0.12 Score=47.83 Aligned_cols=190 Identities=12% Similarity=0.103 Sum_probs=101.2
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCce-eEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV-IKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCI 266 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 266 (498)
+.+..+.+.+ ++..++++ .+|.| |-..+.+.. .....++...+..+.+.+++.+++.+...+..+-+|- .+..-
T Consensus 122 ~~~~~i~~~~-~~~~~~~~-~~g~v--~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW 196 (327)
T 2xbg_A 122 GSPRLIKALG-NGSAEMIT-NVGAI--YRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAW 196 (327)
T ss_dssp SCEEEEEEEE-TTEEEEEE-TTCCE--EEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSC
T ss_pred CCeEEEEEEC-CCCEEEEe-CCccE--EEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCce
Confidence 3466777776 56666655 45544 322222332 2333456678999999999887776644333333442 12222
Q ss_pred EEEe--cCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-----cCCCeEEEEEcCCCCEEEEEcCCCeEE
Q 010871 267 RVIY--GVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-----VDSEVTSMDHDHTGQLLFCGDAQGCIY 339 (498)
Q Consensus 267 ~~~~--~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~i~~l~~~~~~~~l~~~~~dg~i~ 339 (498)
..+. ....+..+.+.+++ .+++ ++.+|.+++.+...++.-..+. ....+.++.+.+++.+++++. +|.|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~g-~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~ 273 (327)
T 2xbg_A 197 EPHNRTTSRRLHNMGFTPDG-RLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL 273 (327)
T ss_dssp EEEECCSSSCEEEEEECTTS-CEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE
T ss_pred eECCCCCCCccceeEECCCC-CEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE
Confidence 2222 23466788887754 4444 4467887776533344333332 123588999998877777665 66663
Q ss_pred EEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEE
Q 010871 340 SISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFS 396 (498)
Q Consensus 340 i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd 396 (498)
+..+... ....... .......+..+.+. . +..+++++.+|.|.-++
T Consensus 274 -~S~DgG~-tW~~~~~---~~~~~~~~~~v~~~-----~-~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 274 -CSQDGGQ-TWQQDVD---VKKVPSNFYKILFF-----S-PDQGFILGQKGILLRYV 319 (327)
T ss_dssp -EESSTTS-SCEECGG---GTTSSSCCCEEEEE-----E-TTEEEEECSTTEEEEEC
T ss_pred -EeCCCCc-ccEEcCc---cCCCCCCeEEEEEE-----C-CCceEEEcCCceEEEEc
Confidence 2322211 1111000 01112345555553 3 44577777888776655
No 315
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.16 E-value=0.00078 Score=69.81 Aligned_cols=221 Identities=6% Similarity=-0.042 Sum_probs=115.8
Q ss_pred CCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC----CcEEEEee-cCCCeEEEEEcCCC
Q 010871 252 DKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST----GRIIKKLV-VDSEVTSMDHDHTG 326 (498)
Q Consensus 252 dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~----~~~~~~~~-~~~~i~~l~~~~~~ 326 (498)
.+.|+..++.+......+.....+..++|.+.++.++++-...+.|+.+++.. ......+. .......|++.+.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 45788888887766555555566778999987666666666678999999875 22221221 12345678888554
Q ss_pred C-EEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEc-C-CcEEEEEccccccc
Q 010871 327 Q-LLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ-D-GNLSFFSVALEIQG 403 (498)
Q Consensus 327 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~-d-g~i~iwd~~~~~~~ 403 (498)
. ++++-...+.|.+++++........ .........+.+ +|.+.+|+.+.. . +.|.++++......
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~-------~~~~~~P~giav-----Dp~~g~ly~td~~~~~~I~~~~~dG~~~~ 532 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLF-------REQGSKPRAIVV-----DPVHGFMYWTDWGTPAKIKKGGLNGVDIY 532 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEEC-------CCSSCCCCCEEC-----CSSSSCCEECCCSSSCCEEBCCSSSCCCC
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEE-------eCCCCCcceEEE-----ccCCCcEEEcccCCCCeEEEEeCCCCCee
Confidence 4 4445456778998887643221111 111111233333 365554444432 2 56777766532111
Q ss_pred eeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEE
Q 010871 404 YLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASS 483 (498)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~ 483 (498)
.+. .........+++.+ ..+.++++-+..+.|.++++.......+...........+|++..+ .++++.
T Consensus 533 ~l~------~~~l~~PnGlavd~----~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd 601 (699)
T 1n7d_A 533 SLV------TENIQWPNGITLDL----LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTD 601 (699)
T ss_dssp EES------CSSCSSCCCEEECT----TTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEEC
T ss_pred EEE------eCCCCCccEEEEec----cCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEe
Confidence 100 00011111224443 2345555556678899999975332222221122233455666543 445555
Q ss_pred eCCCeEEEeecC
Q 010871 484 DLYGIVIVWKRA 495 (498)
Q Consensus 484 ~~Dg~i~iW~~~ 495 (498)
...+.|..++..
T Consensus 602 ~~~~~V~~~d~~ 613 (699)
T 1n7d_A 602 IINEAIFSANRL 613 (699)
T ss_dssp STTTCEEEEETT
T ss_pred CCCCeEEEEEcc
Confidence 556788888754
No 316
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.07 E-value=0.2 Score=46.93 Aligned_cols=99 Identities=11% Similarity=0.166 Sum_probs=61.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcE--EEEEe----cCCCeEEEEEEcC---CCcEEEEEeCC-----Cc
Q 010871 231 SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDC--IRVIY----GVSSQLCIRFHPV---NNNFLSVGNAN-----KE 296 (498)
Q Consensus 231 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~----~~~~v~~i~~~~~---~~~~l~~g~~d-----g~ 296 (498)
-..-..|+|.|+|+++++ ..+|.|.+++ .++. +..+. +......++++|+ ++.+.++-... +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999985554 5669999998 4432 22111 2346789999996 45555544432 67
Q ss_pred EEEEEcCCCc-----EEE-Eeec----CCCeEEEEEcCCCCEEEEE
Q 010871 297 ITVFNFSTGR-----IIK-KLVV----DSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 297 i~iwd~~~~~-----~~~-~~~~----~~~i~~l~~~~~~~~l~~~ 332 (498)
|..++...+. .+. .+.. ......++|.|+|.++++.
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 8888876442 111 1221 1234689999999766654
No 317
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.99 E-value=0.1 Score=48.09 Aligned_cols=220 Identities=8% Similarity=0.057 Sum_probs=104.7
Q ss_pred EEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeC----CC-------cEEEEECCCCcEEEEEecCC--CeEEE
Q 010871 212 LTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSM----DK-------TVRVWELTKGDCIRVIYGVS--SQLCI 278 (498)
Q Consensus 212 i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~----dg-------~v~iwd~~~~~~~~~~~~~~--~v~~i 278 (498)
+.+||..+..-....+..............++..++.|+. ++ .+.++|..+.+-...-.... .-.++
T Consensus 26 ~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 105 (318)
T 2woz_A 26 AVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGL 105 (318)
T ss_dssp EEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEE
T ss_pred eEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccce
Confidence 7888887632222222211122222333456777788873 12 16778887765433211111 11122
Q ss_pred EEEcCCCcEEEEEeCC-------CcEEEEEcCCCcEEEEeecCCC--eEEEEEcCCCCEEEEEcC------CCeEEEEEc
Q 010871 279 RFHPVNNNFLSVGNAN-------KEITVFNFSTGRIIKKLVVDSE--VTSMDHDHTGQLLFCGDA------QGCIYSISM 343 (498)
Q Consensus 279 ~~~~~~~~~l~~g~~d-------g~i~iwd~~~~~~~~~~~~~~~--i~~l~~~~~~~~l~~~~~------dg~i~i~d~ 343 (498)
+.. ++.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++.+++.|+. ...+.+||.
T Consensus 106 ~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~ 182 (318)
T 2woz_A 106 GEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNP 182 (318)
T ss_dssp EEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEET
T ss_pred EEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcC
Confidence 222 45677777654 3478889887654433221111 112222 35667777764 235888887
Q ss_pred cCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC-----cEEEEEccccccceeeEeEeeccCCcee
Q 010871 344 ESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG-----NLSFFSVALEIQGYLTFRCSLKLAPRVH 418 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
...+-...... ...... .++.. -++.+++.|+.++ .+.+||+.+.. +...........
T Consensus 183 ~~~~W~~~~~~-----p~~r~~-~~~~~------~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-----W~~~~~~p~~r~ 245 (318)
T 2woz_A 183 KKGDWKDLAPM-----KTPRSM-FGVAI------HKGKIVIAGGVTEDGLSASVEAFDLKTNK-----WEVMTEFPQERS 245 (318)
T ss_dssp TTTEEEEECCC-----SSCCBS-CEEEE------ETTEEEEEEEEETTEEEEEEEEEETTTCC-----EEECCCCSSCCB
T ss_pred CCCEEEECCCC-----CCCccc-ceEEE------ECCEEEEEcCcCCCCccceEEEEECCCCe-----EEECCCCCCccc
Confidence 65432221111 000011 11111 3567777776543 46677776431 111111221111
Q ss_pred eeEEEEeeeeeccCCCEEEEEeCC--------------CcEEEEECCCCCccc
Q 010871 419 SIRASFCPLLSLEKGEYIVAGSED--------------SNVYFYDLAKPKHSC 457 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~gs~d--------------g~I~iwd~~~~~~~~ 457 (498)
...+.. -++.+++.|+.+ ..+.+||+.+.+...
T Consensus 246 ~~~~~~------~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 246 SISLVS------LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp SCEEEE------ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred ceEEEE------ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 111111 167777777754 358889988765443
No 318
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.99 E-value=0.092 Score=57.30 Aligned_cols=260 Identities=10% Similarity=0.155 Sum_probs=139.1
Q ss_pred CCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEE
Q 010871 209 DGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFL 288 (498)
Q Consensus 209 dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 288 (498)
..+|.|-|+.++....+.-.. --+.-.+|..+.|+--. ..++.|+|+++...+..+.-..+|.--.|.... .|
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~--~l 119 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TV 119 (1630)
T ss_pred CceEEEEECCCCCCccccccc----chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCC--ee
Confidence 347889999875444332111 12334567766655543 678999999999988888888888888887633 34
Q ss_pred EEEeCCCcEEEEEcCCC-cEEEEee-c----CCCeEEEEEcCCCCEEEEEc-------CCCeEEEEEccCCccccccccc
Q 010871 289 SVGNANKEITVFNFSTG-RIIKKLV-V----DSEVTSMDHDHTGQLLFCGD-------AQGCIYSISMESHSGALSRSHR 355 (498)
Q Consensus 289 ~~g~~dg~i~iwd~~~~-~~~~~~~-~----~~~i~~l~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~ 355 (498)
+.. .+..|+.|++... .+++.+. | ...|..-..+++.++++..+ -.|.+.+|+.+.......
T Consensus 120 ~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~i---- 194 (1630)
T 1xi4_A 120 ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---- 194 (1630)
T ss_pred EEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhh----
Confidence 333 3568999999642 3333332 2 45677788889988776443 347788888765443332
Q ss_pred ccccCCCccceeeEEEeEeeEcCCCcEEEEEEc---CCcEEEEEccccccc--eeeEe-EeeccCC---ceeeeEEEEee
Q 010871 356 HRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQ---DGNLSFFSVALEIQG--YLTFR-CSLKLAP---RVHSIRASFCP 426 (498)
Q Consensus 356 ~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~---dg~i~iwd~~~~~~~--~~~~~-~~~~~~~---~~~~~~~~~~~ 426 (498)
.+|-.....+....-. +....++.+.. .+.+.|.++.....+ ....+ ....+++ .-..+....+
T Consensus 195 ----egha~~F~~~~~~~~~--~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs- 267 (1630)
T 1xi4_A 195 ----EGHAASFAQFKMEGNA--EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS- 267 (1630)
T ss_pred ----hHhHhhhheeccCCCC--CCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEec-
Confidence 2332222222211000 11112222211 268888888543111 11000 0011111 1111222223
Q ss_pred eeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEee
Q 010871 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWK 493 (498)
Q Consensus 427 ~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~ 493 (498)
+.-..+..-+.-|.|++||+.++. ++..-+-...+|-..+-+....-++.....|.|.--.
T Consensus 268 ----~k~g~iy~itk~G~~~~~d~~t~~--~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~ 328 (1630)
T 1xi4_A 268 ----EKHDVVFLITKYGYIHLYDLETGT--CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVC 328 (1630)
T ss_pred ----cccCEEEEEecCceEEEEecccch--hhhhccccCCceEEeccCCCCCceEEEcCCceEEEEE
Confidence 366677888889999999999964 3433332333444333332222233333455554433
No 319
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.02 Score=53.11 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEecC--CCeEEEEEE--cCCCcEEEEE-eCCCcEEEEEcCCCcEEEEeecC----
Q 010871 244 QYIASSSMDKTVRVWELTKGDCIRVIYGV--SSQLCIRFH--PVNNNFLSVG-NANKEITVFNFSTGRIIKKLVVD---- 314 (498)
Q Consensus 244 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~v~~i~~~--~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~---- 314 (498)
..++.++.||.|.-.|..+|+.+.++... .++....-. +.++..++.. +.||.|..++..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 37889999999999999999999999875 333321110 1122344443 58999999999988666555422
Q ss_pred -CCeEE---EEE-c----CCCCEEEEEcCCCeEEEEEccCCccc
Q 010871 315 -SEVTS---MDH-D----HTGQLLFCGDAQGCIYSISMESHSGA 349 (498)
Q Consensus 315 -~~i~~---l~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~ 349 (498)
.++.. ..+ . ..+..+++|+.+|.++..|+.+....
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence 22221 000 0 14567889999999999988765443
No 320
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.05 Score=50.35 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=84.0
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceeEEeecC-CCCeEEEEEc--c-CCCEEEEE-eCCCcEEEEECCCCcEEEEEecCC--
Q 010871 201 DLLAYGASDGTLTVCTVSDPPKVIKLLNGH-SKDVTDFDFS--S-NNQYIASS-SMDKTVRVWELTKGDCIRVIYGVS-- 273 (498)
Q Consensus 201 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~s--~-~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~-- 273 (498)
.+++.++.||.|.-+|..+ ++....++.. ..++....-. + ++..++.. +.||.|..++..+|.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-GHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-TEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4788899999999999887 7777777643 1222221110 1 22333333 589999999999886655544321
Q ss_pred ---CeEE---EEE-Ec---CCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCe--------EEEEEc-----CCCCEEE
Q 010871 274 ---SQLC---IRF-HP---VNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEV--------TSMDHD-----HTGQLLF 330 (498)
Q Consensus 274 ---~v~~---i~~-~~---~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i--------~~l~~~-----~~~~~l~ 330 (498)
+... ... .+ ..+..+++|+.+|.+...|+.+|+.+..+...... .|.... ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1111 000 00 03457889999999999999999999998643221 111111 1235677
Q ss_pred EEcCCCeEEEEE
Q 010871 331 CGDAQGCIYSIS 342 (498)
Q Consensus 331 ~~~~dg~i~i~d 342 (498)
.+..+..+.+.+
T Consensus 170 ig~~~y~v~~~~ 181 (339)
T 2be1_A 170 IGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEECEECC
T ss_pred EecceEEEEEEC
Confidence 776666666554
No 321
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.89 E-value=0.062 Score=50.43 Aligned_cols=144 Identities=8% Similarity=0.052 Sum_probs=72.6
Q ss_pred CCCEEEEEeCC-CcEEEEEcCCCCceeEEeec----CCCCeEEEEEccCCCEEEEEeC-C---------CcEEEEECCCC
Q 010871 199 SSDLLAYGASD-GTLTVCTVSDPPKVIKLLNG----HSKDVTDFDFSSNNQYIASSSM-D---------KTVRVWELTKG 263 (498)
Q Consensus 199 ~~~~lasg~~d-g~i~iwd~~~~~~~~~~~~~----h~~~V~~l~~s~~~~~l~s~s~-d---------g~v~iwd~~~~ 263 (498)
++.+++.|+.+ ..+.+||.......-..+.. ....-.++.+ ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56677777643 46888888631122222221 1111122222 5666666665 2 46888998877
Q ss_pred cEEEEEecC-C--CeEEEEEEcCCCcEEEEEeCC---------------------------------------CcEEEEE
Q 010871 264 DCIRVIYGV-S--SQLCIRFHPVNNNFLSVGNAN---------------------------------------KEITVFN 301 (498)
Q Consensus 264 ~~~~~~~~~-~--~v~~i~~~~~~~~~l~~g~~d---------------------------------------g~i~iwd 301 (498)
+-...-... . .-.+++. . ++.+++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 543321111 1 1122222 2 55777778754 5789999
Q ss_pred cCCCcEEEEe--ecCCCe-EEEEEcCCCCEEEEEcC------CCeEEEEEccCCc
Q 010871 302 FSTGRIIKKL--VVDSEV-TSMDHDHTGQLLFCGDA------QGCIYSISMESHS 347 (498)
Q Consensus 302 ~~~~~~~~~~--~~~~~i-~~l~~~~~~~~l~~~~~------dg~i~i~d~~~~~ 347 (498)
+.+.+-...- .....- .+++.. ++.+++.|+. ...+.+|+++..+
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~ 228 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNN 228 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCC
Confidence 9876543332 222122 233332 5566777654 3357777763333
No 322
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.81 E-value=0.34 Score=45.37 Aligned_cols=101 Identities=8% Similarity=0.086 Sum_probs=61.4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-EEEEEe----cCCCeEEEEEEcC---CCcEEEEEeC---C----C
Q 010871 231 SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD-CIRVIY----GVSSQLCIRFHPV---NNNFLSVGNA---N----K 295 (498)
Q Consensus 231 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~----~~~~v~~i~~~~~---~~~~l~~g~~---d----g 295 (498)
-.....|+|.|+|++++ +..+|.|++++ ..++ .+..+. +......++++|+ ++.+.++-.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34568999999997544 55669999987 4454 222211 2246789999996 4555554432 3 5
Q ss_pred cEEEEEcCCC-------cEE-EEee--cCCCeEEEEEcCCCCEEEEEc
Q 010871 296 EITVFNFSTG-------RII-KKLV--VDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 296 ~i~iwd~~~~-------~~~-~~~~--~~~~i~~l~~~~~~~~l~~~~ 333 (498)
.|..|+.... +.+ ..+. .......++|.|+|.++++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 6777877644 111 1122 112356799999998666643
No 323
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.71 E-value=0.25 Score=45.31 Aligned_cols=218 Identities=9% Similarity=0.100 Sum_probs=106.2
Q ss_pred cEEEEECCCCcEEEE-EecCCCeEEEEEEcCCCcEEEEEeC----CC-------cEEEEEcCCCcEEEEee--cCCCeEE
Q 010871 254 TVRVWELTKGDCIRV-IYGVSSQLCIRFHPVNNNFLSVGNA----NK-------EITVFNFSTGRIIKKLV--VDSEVTS 319 (498)
Q Consensus 254 ~v~iwd~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~g~~----dg-------~i~iwd~~~~~~~~~~~--~~~~i~~ 319 (498)
.+.+||..+++.... +....+-...+....++.+++.|+. ++ .+.+||..+.+-...-. ....-.+
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 378899988875442 1111111111222235667777763 11 17788987765443221 1111122
Q ss_pred EEEcCCCCEEEEEcCC-------CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC---
Q 010871 320 MDHDHTGQLLFCGDAQ-------GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD--- 389 (498)
Q Consensus 320 l~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d--- 389 (498)
++.. ++.+++.|+.+ ..+.+||....+-......+ .+... +.... .++.+++.|+.+
T Consensus 105 ~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--------~~r~~---~~~~~-~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 105 LGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP--------IKVYG---HNVIS-HNGMIYCLGGKTDDK 171 (318)
T ss_dssp EEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS--------SCEES---CEEEE-ETTEEEEECCEESSS
T ss_pred eEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC--------Ccccc---cEEEE-ECCEEEEEcCCCCCC
Confidence 2222 56677777653 24777776543322111110 00000 01111 356677776642
Q ss_pred ---CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCC-----CcEEEEECCCCCccceeee
Q 010871 390 ---GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSED-----SNVYFYDLAKPKHSCVNKL 461 (498)
Q Consensus 390 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----g~I~iwd~~~~~~~~~~~~ 461 (498)
..+.+||..+.. ...............+.. -++.+++.|+.+ ..+.+||+.+.+...+..+
T Consensus 172 ~~~~~~~~yd~~~~~-----W~~~~~~p~~r~~~~~~~------~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 240 (318)
T 2woz_A 172 KCTNRVFIYNPKKGD-----WKDLAPMKTPRSMFGVAI------HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF 240 (318)
T ss_dssp CBCCCEEEEETTTTE-----EEEECCCSSCCBSCEEEE------ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCC
T ss_pred CccceEEEEcCCCCE-----EEECCCCCCCcccceEEE------ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCC
Confidence 358888887542 111111222111111111 167777887654 3578999988765544444
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC--------------CeEEEeecCCC
Q 010871 462 QGHRFPVVAVAWNHGENLLASSDLY--------------GIVIVWKRAKT 497 (498)
Q Consensus 462 ~~h~~~V~~l~~sp~~~~l~s~~~D--------------g~i~iW~~~~~ 497 (498)
.........+.+ ++.+++.||.+ ..+.+||+++.
T Consensus 241 p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 241 PQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp SSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred CCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 332222223333 46777777754 35777887653
No 324
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.66 E-value=0.46 Score=46.42 Aligned_cols=255 Identities=9% Similarity=0.053 Sum_probs=134.0
Q ss_pred CeEEEEEcc-CCCEEEEE-eCCCcEEEEECCCCcEEEEEecC----CCeEEEEE-------EcCCCcEEEEEeCCC----
Q 010871 233 DVTDFDFSS-NNQYIASS-SMDKTVRVWELTKGDCIRVIYGV----SSQLCIRF-------HPVNNNFLSVGNANK---- 295 (498)
Q Consensus 233 ~V~~l~~s~-~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~----~~v~~i~~-------~~~~~~~l~~g~~dg---- 295 (498)
....|+|.| +...|+.+ ...+.|++.|+.++.....+... ..+..++| .+++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 357899998 34445544 44467888998877665544432 24788999 887654555544332
Q ss_pred --cEEEEEcCC-CcEE-----EEeecCCCeEEEEEcCC-CCEEEEEcCCCeEEEEEcc-------CCcc-cc-ccc----
Q 010871 296 --EITVFNFST-GRII-----KKLVVDSEVTSMDHDHT-GQLLFCGDAQGCIYSISME-------SHSG-AL-SRS---- 353 (498)
Q Consensus 296 --~i~iwd~~~-~~~~-----~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~-------~~~~-~~-~~~---- 353 (498)
.|.+++... +... ..+........++++|+ +.++++-..++.|+.+|++ .... .. ...
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266666443 2221 12222234457788994 5566677788899999987 2221 00 000
Q ss_pred ccccccCCCccceeeEEEeEeeEcCCCcEEEEE-EcCCcEEEEEccccccce---eeEeEeeccCCce------eeeEEE
Q 010871 354 HRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC-TQDGNLSFFSVALEIQGY---LTFRCSLKLAPRV------HSIRAS 423 (498)
Q Consensus 354 ~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~-s~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~------~~~~~~ 423 (498)
...............+ +++|+|++|+.+ +....|+.++........ ..+.-.....+.. ..+..-
T Consensus 300 ~~~l~~~~~~~~p~~i-----a~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 300 FKQLFTIADPSWEFQI-----FIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp EEEEEECSSSSCCEEE-----EECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred cceeEecCCCCCceEE-----EEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 0000001111222334 445999965444 566788887654321100 0110000000000 000000
Q ss_pred Eeeeeec-------cCCCEEEEEeCCCcEEEEECCCCCccceeeecCC------------------------CCCeEEEE
Q 010871 424 FCPLLSL-------EKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGH------------------------RFPVVAVA 472 (498)
Q Consensus 424 ~~~~~~~-------~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h------------------------~~~V~~l~ 472 (498)
..-++.. .+|.++++-..+..|+.++. ++. +.++.+. -.....|+
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~---v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI---VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB---EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC---EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 0011111 25667777677788999984 332 3333221 12367899
Q ss_pred EcCC-CCEEEEEeCCCeEEEeecCC
Q 010871 473 WNHG-ENLLASSDLYGIVIVWKRAK 496 (498)
Q Consensus 473 ~sp~-~~~l~s~~~Dg~i~iW~~~~ 496 (498)
++++ +.++++=.....|+.++++.
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCC
Confidence 9997 66666666678999998875
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.64 E-value=0.23 Score=46.37 Aligned_cols=166 Identities=10% Similarity=0.034 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCEEEEE------------cCCCeEEEEEccCCcccccccccccc--cCCCccceeeEEEeEeeEcCCCc
Q 010871 316 EVTSMDHDHTGQLLFCG------------DAQGCIYSISMESHSGALSRSHRHRT--TGKRKCPVTTVQYRSFSLLAGGP 381 (498)
Q Consensus 316 ~i~~l~~~~~~~~l~~~------------~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~s~~~~ 381 (498)
....+.+.++|..++++ ..+|.|.++|.+........ ..... ..........+.+.. ..++.
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~-l~~~g~~~~~~~f~PhGi~~~~---d~dg~ 126 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSE-LEIIGNTLDISSFNPHGISTFI---DDDNT 126 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEE-CEEECSSCCGGGCCEEEEEEEE---CTTCC
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEE-EEccCCCCCcCceeeeeeEEEE---CCCCc
Confidence 45566677776555444 27899999998754332221 11110 111122333444321 01343
Q ss_pred -EEEEE-Ec--CCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEe-----------------
Q 010871 382 -VLLTC-TQ--DGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGS----------------- 440 (498)
Q Consensus 382 -~l~t~-s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs----------------- 440 (498)
+|+++ .. +..|.+|++....... ..............-...+.+ +|.+.++..
T Consensus 127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~-~~~~~~~g~~~~~pND~~v~~-----~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 127 VYLLVVNHPGSSSTVEVFKFQEEEKSL-LHLKTIRHKLLPSVNDIVAVG-----PEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EEEEEEECSTTCCEEEEEEEETTTTEE-EEEEEECCTTCSSEEEEEEEE-----TTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCeEEEEEEECCCCEE-EEEeccccCCCCCCceEEEeC-----CCCEEecCCcEeCCcccccchhhccC
Confidence 34444 33 4678888887543222 222222222111122223444 888777654
Q ss_pred CCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEeecCC
Q 010871 441 EDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSD-LYGIVIVWKRAK 496 (498)
Q Consensus 441 ~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~i~iW~~~~ 496 (498)
..|.|+.+|.. + +..+...-...+.++|+||++.|+.+. ..+.|..|++..
T Consensus 201 ~~g~vyr~d~~--~---~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 201 AWSFVTYYSPN--D---VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp CCEEEEEECTT--C---CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CccEEEEEECC--e---EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 12455555542 2 222223334678999999998777665 568899998863
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.63 E-value=0.22 Score=47.09 Aligned_cols=139 Identities=19% Similarity=0.225 Sum_probs=95.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceeEEeecC----CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc----------
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVIKLLNGH----SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGD---------- 264 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~---------- 264 (498)
++..|+.+- ++.||..++.. ....+.+.-- -..|..+..+|+|++|+..+. ..|.|-.+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~-~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLT-DSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTT-CSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred CCCEEEEEE-CCEEEEEECCC-CCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence 566555554 47788888875 2344444432 236888999999999998864 578998887321
Q ss_pred --EEEEEec-------CCCeEEEEEEcCCCc--EEEEEeCCCcEEEEEcCCC--cEEEEee----------cCCCeEEEE
Q 010871 265 --CIRVIYG-------VSSQLCIRFHPVNNN--FLSVGNANKEITVFNFSTG--RIIKKLV----------VDSEVTSMD 321 (498)
Q Consensus 265 --~~~~~~~-------~~~v~~i~~~~~~~~--~l~~g~~dg~i~iwd~~~~--~~~~~~~----------~~~~i~~l~ 321 (498)
..+.+.. ..+|..+.|||.+.+ .|++-..|+.|++||+... ++. .+. ....|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 1233332 356889999997644 8888889999999999752 122 221 125789999
Q ss_pred EcCCCCEEEE--EcCCCeEEEE
Q 010871 322 HDHTGQLLFC--GDAQGCIYSI 341 (498)
Q Consensus 322 ~~~~~~~l~~--~~~dg~i~i~ 341 (498)
|..++-.|.+ .+..|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 9998876766 4488988764
No 327
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.52 E-value=0.099 Score=49.45 Aligned_cols=112 Identities=12% Similarity=0.130 Sum_probs=72.0
Q ss_pred CcEEEEEeCCCcEEEEEcCCCcEEEEeecC----C-CeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccc--------
Q 010871 285 NNFLSVGNANKEITVFNFSTGRIIKKLVVD----S-EVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALS-------- 351 (498)
Q Consensus 285 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~----~-~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------- 351 (498)
+.-++.+ .++.||.-++..+...+.+..+ . .|..+..+|+|++|+..+. ..|.+..+........
T Consensus 32 ~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 32 GTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccccc
Confidence 3344433 3567777777644444444333 2 6788999999999998864 4788888773211110
Q ss_pred --cccccccc-CCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcccc
Q 010871 352 --RSHRHRTT-GKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 352 --~~~~~~~~-~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
+....... .....+|..+.|++++ ..+..|++-..|+.|++||+...
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~--~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKS--YRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTB--GGGCEEEEEETTSCEEEEETTCT
T ss_pred ceeEEEcCCcccCCCCceeEEEecccc--CCCCeEEEEecCCEEEEEEcccC
Confidence 01111101 1135779999999766 55789999999999999999863
No 328
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.20 E-value=0.81 Score=42.73 Aligned_cols=101 Identities=11% Similarity=0.094 Sum_probs=58.0
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEE--------ecCCCeEEEEEEcC---CCcEEEEEeC-------
Q 010871 232 KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVI--------YGVSSQLCIRFHPV---NNNFLSVGNA------- 293 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~--------~~~~~v~~i~~~~~---~~~~l~~g~~------- 293 (498)
.....|+|.|+|+.|+.+...|.|++++.. +.....+ .+......++++|+ ++.+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 456899999999834445567999999853 3321111 12235678999995 4455544332
Q ss_pred CCcEEEEEcCCC--c--EEEEe----ec----CCCeEEEEEcCCCCEEEEEc
Q 010871 294 NKEITVFNFSTG--R--IIKKL----VV----DSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 294 dg~i~iwd~~~~--~--~~~~~----~~----~~~i~~l~~~~~~~~l~~~~ 333 (498)
...|..|++..+ . ....+ .. ......++|.|+|.++++.+
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 235666666432 1 11111 11 12246799999997555543
No 329
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.18 E-value=0.83 Score=42.63 Aligned_cols=140 Identities=12% Similarity=0.073 Sum_probs=77.4
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee---cCCCCeEEEEEccC---CCEEEEEeC-C-----CcE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN---GHSKDVTDFDFSSN---NQYIASSSM-D-----KTV 255 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~~---~~~l~s~s~-d-----g~v 255 (498)
..-..|+|.| +++++++ ..+|.|.+++ ......+..+. ........|+|+|+ +..|+.+.. . +.|
T Consensus 31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECT-TSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcC-CCeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3567999999 8875554 5679999998 32112222221 22456899999998 445544432 2 567
Q ss_pred EEEECCCCc-----EEE-EEec--C--CCeEEEEEEcCCCcEEEEEeC-------------CCcEEEEEcCC--------
Q 010871 256 RVWELTKGD-----CIR-VIYG--V--SSQLCIRFHPVNNNFLSVGNA-------------NKEITVFNFST-------- 304 (498)
Q Consensus 256 ~iwd~~~~~-----~~~-~~~~--~--~~v~~i~~~~~~~~~l~~g~~-------------dg~i~iwd~~~-------- 304 (498)
..++...+. .+. .+.. . .....++|.|++ .+.++.+. .|.|.-++...
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 788876442 111 1321 1 123578999976 44444322 14566565542
Q ss_pred ------CcEEEEeecCCCeEEEEEcC-CCCEEEEE
Q 010871 305 ------GRIIKKLVVDSEVTSMDHDH-TGQLLFCG 332 (498)
Q Consensus 305 ------~~~~~~~~~~~~i~~l~~~~-~~~~l~~~ 332 (498)
...+.... -.....++|+| ++.++++-
T Consensus 187 ~~~~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 187 LGRRGARPEVYSLG-HRNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp TTCTTSCTTEEEEC-CSEECCCEECTTTCCEEEEE
T ss_pred cCCCCCCccEEEEc-CCCcccEEEECCCCCEEEEE
Confidence 01111112 23467789999 56655543
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.99 E-value=0.37 Score=45.03 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=28.2
Q ss_pred cEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC------eEEEeecCCC
Q 010871 444 NVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYG------IVIVWKRAKT 497 (498)
Q Consensus 444 ~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg------~i~iW~~~~~ 497 (498)
.+.+||+.+.+...+..+......-.++. -++++++.||.++ .|.++++++.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CC
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCc
Confidence 57899999877665555543333323333 3678888888653 3444566543
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.96 E-value=0.53 Score=40.24 Aligned_cols=185 Identities=11% Similarity=-0.003 Sum_probs=88.8
Q ss_pred cEEEEEeCCCcEEEEEcCCCc------EEEEeec--CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccccccccc
Q 010871 286 NFLSVGNANKEITVFNFSTGR------IIKKLVV--DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHR 357 (498)
Q Consensus 286 ~~l~~g~~dg~i~iwd~~~~~------~~~~~~~--~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 357 (498)
.+|++...| +++.=....+. ....+.. =..+..++|+|+|.+.++ .+|.++-.+..+.....-......
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 455555555 55544443333 2233333 246779999999997777 778777665433222111110000
Q ss_pred cc-CCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEE
Q 010871 358 TT-GKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYI 436 (498)
Q Consensus 358 ~~-~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 436 (498)
.- .+... |..+.+.++|.+.++ .||.|.-++-.+.................-. .|..+.+.++|.+.
T Consensus 82 IG~~Gw~~------F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~----~~~~lff~p~G~Ly 149 (236)
T 1tl2_A 82 IGNGGWNQ------FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWS----GFKFLFFHPNGYLY 149 (236)
T ss_dssp EECSCGGG------CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGG----GEEEEEECTTSCEE
T ss_pred eccccccc------ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCC----ceEEEEECCCceEE
Confidence 00 00111 344445589988777 6698887765432222111110000000001 22333444589888
Q ss_pred EEEeCCCcEEEEECCCCCc----cceeeec-CCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 010871 437 VAGSEDSNVYFYDLAKPKH----SCVNKLQ-GHRFPVVAVAWNHGENLLASSDLYGIV 489 (498)
Q Consensus 437 ~~gs~dg~I~iwd~~~~~~----~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~i 489 (498)
++. |+.++-....+... .....+. ..-..-+-+.|.+++.+.+.. +|.+
T Consensus 150 av~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 150 AVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 777 77754433222110 0011111 222234557799999877766 6633
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.52 E-value=0.6 Score=51.19 Aligned_cols=221 Identities=14% Similarity=0.159 Sum_probs=123.5
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEE
Q 010871 253 KTVRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 253 g~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~ 332 (498)
.+|.|-|+..+..+... .-..-+...+|. .++++.- ...++.|+|+++.+.+..+.....|.-=.|-.... |+..
T Consensus 48 ~~vvIidl~~~~~~~rr--pi~AdsAIMnP~-~~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~-l~lV 122 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRR--PISADSAIMNPA-SKVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VALV 122 (1630)
T ss_pred ceEEEEECCCCCCcccc--cccchhhccCCC-cceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCCe-eEEE
Confidence 36778888776543111 111224455673 3555555 47899999999999998888878887777765543 3333
Q ss_pred cCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEE-------cCCcEEEEEcccccccee
Q 010871 333 DAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCT-------QDGNLSFFSVALEIQGYL 405 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s-------~dg~i~iwd~~~~~~~~~ 405 (498)
+ +..|+.|++.......... ..|. .....++.....+++.++++..+ -.|.+.+|.+.....
T Consensus 123 T-~~aVyHW~~~~~s~P~k~f------dR~~-~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s--- 191 (1630)
T 1xi4_A 123 T-DNAVYHWSMEGESQPVKMF------DRHS-SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--- 191 (1630)
T ss_pred c-CCeEEEeccCCCCccHHHH------hcch-hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc---
Confidence 3 4579999996533222111 1111 11223344444558888887654 347788888764321
Q ss_pred eEeEeeccCCceeeeEEEEeeeeec---cCCCEEEEEeC---CCcEEEEECCCC-Ccccee------e-ec--CCCCCeE
Q 010871 406 TFRCSLKLAPRVHSIRASFCPLLSL---EKGEYIVAGSE---DSNVYFYDLAKP-KHSCVN------K-LQ--GHRFPVV 469 (498)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~gs~---dg~I~iwd~~~~-~~~~~~------~-~~--~h~~~V~ 469 (498)
..+..+.++|...... ....+++.+.. .+.++|.++... ...... . +. .-.+-..
T Consensus 192 ---------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv 262 (1630)
T 1xi4_A 192 ---------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (1630)
T ss_pred ---------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce
Confidence 1111111122111110 11223332222 268999998653 111100 0 11 1123355
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEeecCCCC
Q 010871 470 AVAWNHGENLLASSDLYGIVIVWKRAKTS 498 (498)
Q Consensus 470 ~l~~sp~~~~l~s~~~Dg~i~iW~~~~~s 498 (498)
++..++....+..-+.-|.|+++|+++++
T Consensus 263 ~~~vs~k~g~iy~itk~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGT 291 (1630)
T ss_pred EEEeccccCEEEEEecCceEEEEecccch
Confidence 67778877788888889999999999874
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.45 E-value=1.6 Score=40.42 Aligned_cols=108 Identities=10% Similarity=0.058 Sum_probs=65.1
Q ss_pred EeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE--E-----ecCCCeEEEEEEcC---CCcEEEEE--eC
Q 010871 226 LLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV--I-----YGVSSQLCIRFHPV---NNNFLSVG--NA 293 (498)
Q Consensus 226 ~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~-----~~~~~v~~i~~~~~---~~~~l~~g--~~ 293 (498)
.+...-..-..|+|.|+|+++++--..|.|++++...++.... + .+......++++|+ ++.+.++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 3433445678999999998777765589999998766654222 1 12346789999985 33343332 23
Q ss_pred CCcEEEEEcCCC----------cEEE-Eee--cCCCeEEEEEcCCCCEEEEEc
Q 010871 294 NKEITVFNFSTG----------RIIK-KLV--VDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 294 dg~i~iwd~~~~----------~~~~-~~~--~~~~i~~l~~~~~~~~l~~~~ 333 (498)
++.|.-|.+..+ +.+. .+. .......|.|.|+|.++++.+
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 455666665441 1111 121 122345799999998776643
No 334
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.30 E-value=1.8 Score=40.19 Aligned_cols=135 Identities=12% Similarity=0.104 Sum_probs=80.0
Q ss_pred CCCcEEEEEcCCCCceeEE--eec-----CCCCeEEEEEcc--CCC-EEEEE-eC--CCcEEEEECCCC-c---EEEEEe
Q 010871 208 SDGTLTVCTVSDPPKVIKL--LNG-----HSKDVTDFDFSS--NNQ-YIASS-SM--DKTVRVWELTKG-D---CIRVIY 270 (498)
Q Consensus 208 ~dg~i~iwd~~~~~~~~~~--~~~-----h~~~V~~l~~s~--~~~-~l~s~-s~--dg~v~iwd~~~~-~---~~~~~~ 270 (498)
.+|.|.++|..+....... +.+ ..-....|.+.+ ++. +|+.+ .. +.+|.+|+++.+ . .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999999742211222 222 234667788766 353 45444 22 467888887653 2 223333
Q ss_pred cC--CCeEEEEEEcCCCcEEEEEe-----------------CCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEE
Q 010871 271 GV--SSQLCIRFHPVNNNFLSVGN-----------------ANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFC 331 (498)
Q Consensus 271 ~~--~~v~~i~~~~~~~~~l~~g~-----------------~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 331 (498)
+. .....+.+.+++ .+.++.. ..|.|.-+|. ++.......-...+.++|+|+++.|++
T Consensus 161 g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEE
Confidence 32 356788888854 5555542 1234555554 433323334456789999999987766
Q ss_pred E-cCCCeEEEEEccC
Q 010871 332 G-DAQGCIYSISMES 345 (498)
Q Consensus 332 ~-~~dg~i~i~d~~~ 345 (498)
+ +..+.|+.|+++.
T Consensus 238 adt~~~~I~~~~~~~ 252 (355)
T 3sre_A 238 AELLAHKIHVYEKHA 252 (355)
T ss_dssp EEGGGTEEEEEEECT
T ss_pred EeCCCCeEEEEEECC
Confidence 5 4578899999864
No 335
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.30 E-value=0.38 Score=41.11 Aligned_cols=138 Identities=12% Similarity=0.010 Sum_probs=72.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCc------EEEEEec--CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcE------E
Q 010871 243 NQYIASSSMDKTVRVWELTKGD------CIRVIYG--VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRI------I 308 (498)
Q Consensus 243 ~~~l~s~s~dg~v~iwd~~~~~------~~~~~~~--~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~------~ 308 (498)
...|+....| +|+.=....+. ...++-. -..+..++|+| ++.+.++ .+|.+.-.+..+... -
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 3456666666 55554444443 2233332 24667999999 4455555 677777666644221 1
Q ss_pred EEeec--CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEE
Q 010871 309 KKLVV--DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTC 386 (498)
Q Consensus 309 ~~~~~--~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~ 386 (498)
..+.. -....++.|.++|.+.++ .||.|+-++-..................--..+..+. +.|+|.+.++.
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lf-----f~p~G~Lyav~ 152 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLF-----FHPNGYLYAVH 152 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEE-----ECTTSCEEEEE
T ss_pred cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEE-----ECCCceEEEEe
Confidence 12210 011478999999998888 5699987764322211110000000011112344444 44999877776
Q ss_pred EcCCcEE
Q 010871 387 TQDGNLS 393 (498)
Q Consensus 387 s~dg~i~ 393 (498)
|+.+.
T Consensus 153 --dg~ly 157 (236)
T 1tl2_A 153 --GQQFY 157 (236)
T ss_dssp --TTEEE
T ss_pred --CCcEE
Confidence 77754
No 336
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.03 E-value=2 Score=39.02 Aligned_cols=243 Identities=10% Similarity=0.106 Sum_probs=120.1
Q ss_pred CCCEEEEEe--CCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCC--------------CcEEEEECCC
Q 010871 199 SSDLLAYGA--SDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMD--------------KTVRVWELTK 262 (498)
Q Consensus 199 ~~~~lasg~--~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~d--------------g~v~iwd~~~ 262 (498)
++..|+... .++.|...+.+ +.....+... .+--+++++.+|+-+... ..|+..++..
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~d--g~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNID--GSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETT--SCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred eCCEEEEEeCCCCceEEEEcCC--CCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 555555554 24555555544 3334444432 234557888888866543 3577777776
Q ss_pred CcEEEEEecCCCeEEEEEEcCCCcEEEEE---eCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC-CCeE
Q 010871 263 GDCIRVIYGVSSQLCIRFHPVNNNFLSVG---NANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA-QGCI 338 (498)
Q Consensus 263 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~g---~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i 338 (498)
++........ ...++++++.+..+- .....|...++..........+.. ..++++++.|+-.+. ...|
T Consensus 98 ~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 98 HGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp CCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCE
T ss_pred CcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceE
Confidence 6533322221 235667666555554 234556666765443332222222 346778887775554 5678
Q ss_pred EEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC--cEEEEEccccccceeeEeEeeccCCc
Q 010871 339 YSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG--NLSFFSVALEIQGYLTFRCSLKLAPR 416 (498)
Q Consensus 339 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 416 (498)
+..+++........ . .... . + +.|++.+|+-....+ .|..-++.......+ ....
T Consensus 170 y~~~l~g~~~~~l~-------~---~~~~-~---~--~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~L-------t~~~ 226 (302)
T 3s25_A 170 YRYDTASQSEALFY-------D---CNCY-K---P--VVLDDTNVYYMDVNRDNAIVHVNINNPNPVVL-------TEAN 226 (302)
T ss_dssp EEEETTTTEEEEEE-------C---SCEE-E---E--EEEETTEEEEEEGGGTTEEEEECSSSCCCEEC-------SCSC
T ss_pred EEEECCCCCEEEEe-------C---CCcc-c---e--eeecCCEEEEEEcCCCcEEEEEECCCCCeEEE-------eCCC
Confidence 88777544322211 1 1111 1 1 227788887766543 344444443221111 0111
Q ss_pred eeeeEEEEeeeeeccCCCEEEEEeC--CCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEee
Q 010871 417 VHSIRASFCPLLSLEKGEYIVAGSE--DSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSD-LYGIVIVWK 493 (498)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~l~~gs~--dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~i~iW~ 493 (498)
. ..+.| ++.+|+-+.. .+.|..-++.......+ ..+ .+..+ ++.+.+|+-.. ..+.|..-+
T Consensus 227 ~----~~~~~-----~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l--~~~---~~~~i--~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 227 I----EHYNV-----YGSLIFYQRGGDNPALCVVKNDGTGFKEL--AKG---EFCNI--NVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp E----EEEEE-----ETTEEEEEECSSSCEEEEEETTSCCCEEE--EES---CEEEE--EECSSEEEEEETTTCCEEEEE
T ss_pred c----ceEEE-----CCCEEEEEECCCCcEEEEEECCCCccEEe--eCC---ccceE--EEeCCEEEEEECCCCeEEEEE
Confidence 1 13454 6777776532 35677777765332222 112 23343 34556665554 334444434
Q ss_pred c
Q 010871 494 R 494 (498)
Q Consensus 494 ~ 494 (498)
+
T Consensus 291 ~ 291 (302)
T 3s25_A 291 T 291 (302)
T ss_dssp S
T ss_pred C
Confidence 3
No 337
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.01 E-value=2.3 Score=39.65 Aligned_cols=140 Identities=12% Similarity=0.080 Sum_probs=76.9
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee---cCCCCeEEEEEccC---CCEEEEEeC----C----C
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN---GHSKDVTDFDFSSN---NQYIASSSM----D----K 253 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~~---~~~l~s~s~----d----g 253 (498)
.....|+|.| ++++++ +..+|.|.+++... .+.+..+. ........|+|+|+ +..|+.+.. + .
T Consensus 29 ~~P~~ia~~p-dG~l~V-~e~~g~I~~~d~~G-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLG-GGRYLV-TERPGRLVLISPSG-KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEE-TTEEEE-EETTTEEEEECSSC-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcC-CCeEEE-EeCCCEEEEEeCCC-ceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 4578999999 777554 56669999997432 22222221 22356889999997 445544332 2 5
Q ss_pred cEEEEECCCC--c-----EE-EEEecC--CCeEEEEEEcCCCcEEEEEeC-------------CCcEEEEEcCCC-----
Q 010871 254 TVRVWELTKG--D-----CI-RVIYGV--SSQLCIRFHPVNNNFLSVGNA-------------NKEITVFNFSTG----- 305 (498)
Q Consensus 254 ~v~iwd~~~~--~-----~~-~~~~~~--~~v~~i~~~~~~~~~l~~g~~-------------dg~i~iwd~~~~----- 305 (498)
.|..|+.... . .+ ..+... .....++|.|++ .++++.+. .|.|.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 6777776644 1 11 112211 123568999976 44444322 245555554321
Q ss_pred ----cEEEEeecCCCeEEEEEcC-CCCEEEEE
Q 010871 306 ----RIIKKLVVDSEVTSMDHDH-TGQLLFCG 332 (498)
Q Consensus 306 ----~~~~~~~~~~~i~~l~~~~-~~~~l~~~ 332 (498)
..+....+ .....++|+| +++++++-
T Consensus 185 pf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 185 PFPNSPIWSYGH-RNPQGIDWHRASGVMVATE 215 (354)
T ss_dssp SSTTCCEEEECC-SCCCEEEECTTTCCEEEEE
T ss_pred CCCCCcEEEEcc-CCcceEEEeCCCCCEEEEe
Confidence 12222222 3456899999 56655543
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.41 E-value=1.6 Score=44.96 Aligned_cols=193 Identities=17% Similarity=0.172 Sum_probs=97.0
Q ss_pred CCcEEEEEeCC----CcEEEEEcCCCcEEEEe-e-------cCCCeEEEEEcC-CCCEEEEEcCCC------eEEEEEcc
Q 010871 284 NNNFLSVGNAN----KEITVFNFSTGRIIKKL-V-------VDSEVTSMDHDH-TGQLLFCGDAQG------CIYSISME 344 (498)
Q Consensus 284 ~~~~l~~g~~d----g~i~iwd~~~~~~~~~~-~-------~~~~i~~l~~~~-~~~~l~~~~~dg------~i~i~d~~ 344 (498)
++.+++.|+.+ ..+.+||..+++-...- . ....-.+++... ++.+++.|+.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 55677777653 46889998887644332 1 111122333333 677778877543 47778776
Q ss_pred CCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCC--cEEEEEccccccceeeEeEeec---cCCceee
Q 010871 345 SHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDG--NLSFFSVALEIQGYLTFRCSLK---LAPRVHS 419 (498)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg--~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~ 419 (498)
..+-...... .. +.. .+......++.+++.|+.++ .+.+||..+.. +..... .......
T Consensus 477 t~~W~~~~~~-----p~---~R~---~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-----W~~~~~~g~~p~~r~~ 540 (695)
T 2zwa_A 477 TREWSMIKSL-----SH---TRF---RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI-----FKDVTPKDEFFQNSLV 540 (695)
T ss_dssp TTEEEECCCC-----SB---CCB---SCEEEECTTSCEEEECCBCSSCSEEEEETTTTE-----EEECCCSSGGGGSCCB
T ss_pred CCcEEECCCC-----CC---Ccc---cceEEEEcCCEEEEECCCCCCCCEEEEECCCCc-----eEEccCCCCCCCcccc
Confidence 5332211111 00 000 01111113788888888765 68888887542 111111 1111111
Q ss_pred eE-EEEeeeeeccCCCEEEEEeC--C-----CcEEEEECCCCC------ccceeeec-CCCCCeEEEEEcCCCCEEEEEe
Q 010871 420 IR-ASFCPLLSLEKGEYIVAGSE--D-----SNVYFYDLAKPK------HSCVNKLQ-GHRFPVVAVAWNHGENLLASSD 484 (498)
Q Consensus 420 ~~-~~~~~~~~~~~~~~l~~gs~--d-----g~I~iwd~~~~~------~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~ 484 (498)
.. +.+.. .++.+++.|+. + ..+.+||+.+.. ...+.... .....-..+ ...++.+++.||
T Consensus 541 ~~a~v~~~----~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG 615 (695)
T 2zwa_A 541 SAGLEFDP----VSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGG 615 (695)
T ss_dssp SCEEEEET----TTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECC
T ss_pred eeEEEEeC----CCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECC
Confidence 11 11111 12667777765 2 358999998865 22222211 111122222 333367778787
Q ss_pred CC--------CeEEEeecCCC
Q 010871 485 LY--------GIVIVWKRAKT 497 (498)
Q Consensus 485 ~D--------g~i~iW~~~~~ 497 (498)
.+ ..|.+||+++.
T Consensus 616 ~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 616 TSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp BCSSCCCCTTTSEEEEETTTT
T ss_pred ccCCCCCCCCCeEEEEECCCC
Confidence 43 45888887753
No 339
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.08 E-value=3.7 Score=38.12 Aligned_cols=140 Identities=11% Similarity=-0.015 Sum_probs=75.1
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEE-------eecCCCCeEEEEEccC---CCEEEEE-eC-----
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKL-------LNGHSKDVTDFDFSSN---NQYIASS-SM----- 251 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~-------~~~h~~~V~~l~~s~~---~~~l~s~-s~----- 251 (498)
...+.|+|.| +++.|..+...|.|++++... ..... +.........|+|+|+ +..|+.+ +.
T Consensus 18 ~~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~g--~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLP-DNHGMLITLRGGELRHWQAGK--GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECS-TTCCEEEEETTTEEEEEETTT--EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcC-CCCEEEEEeCCceEEEEeCCC--ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 3568999999 888344455679999998542 21111 1122346789999995 4444443 22
Q ss_pred --CCcEEEEECCCC--c--EEEE-Eec-------CCCeEEEEEEcCCCcEEEEEeC-------------CCcEEEEEcCC
Q 010871 252 --DKTVRVWELTKG--D--CIRV-IYG-------VSSQLCIRFHPVNNNFLSVGNA-------------NKEITVFNFST 304 (498)
Q Consensus 252 --dg~v~iwd~~~~--~--~~~~-~~~-------~~~v~~i~~~~~~~~~l~~g~~-------------dg~i~iwd~~~ 304 (498)
...|..+++..+ . .... +.. ......++|.|++ .+.++.+. .|.|.-++...
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 224666666533 1 1121 111 1123479999976 44444322 24576667643
Q ss_pred C--------------cEEEEeecCCCeEEEEEcCCCCEEEEE
Q 010871 305 G--------------RIIKKLVVDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 305 ~--------------~~~~~~~~~~~i~~l~~~~~~~~l~~~ 332 (498)
. ..+... .-.....++|++....|.++
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~-G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSY-GIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEE-CCSEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCcCCCCCCccEEEE-cCcCccceEEECCCCCEEEE
Confidence 2 112222 22457889999943344443
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.04 E-value=4.6 Score=39.02 Aligned_cols=103 Identities=13% Similarity=0.140 Sum_probs=61.8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEE--EEe-------cCCCeEEEEEEcC---CCcEEEEEeC-----
Q 010871 231 SKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIR--VIY-------GVSSQLCIRFHPV---NNNFLSVGNA----- 293 (498)
Q Consensus 231 ~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~-------~~~~v~~i~~~~~---~~~~l~~g~~----- 293 (498)
-.....|+|.|+|+++++-...+.|++++..+++... .+. +......++|+|+ ++.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999877765444568888766554332 221 2245678999995 5445444432
Q ss_pred -------CCcEEEEEcCCC-------cEEEE-ee--cCCCeEEEEEcCCCCEEEEEc
Q 010871 294 -------NKEITVFNFSTG-------RIIKK-LV--VDSEVTSMDHDHTGQLLFCGD 333 (498)
Q Consensus 294 -------dg~i~iwd~~~~-------~~~~~-~~--~~~~i~~l~~~~~~~~l~~~~ 333 (498)
...|.-++...+ +.+.. +. .......|+|.|+|.++++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555655322 11111 21 124578999999998776644
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.03 E-value=3.4 Score=39.98 Aligned_cols=102 Identities=14% Similarity=0.210 Sum_probs=57.9
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCce--eEEeec------CCCCeEEEEEccC---CCEEEEE-eC----
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV--IKLLNG------HSKDVTDFDFSSN---NQYIASS-SM---- 251 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~--~~~~~~------h~~~V~~l~~s~~---~~~l~s~-s~---- 251 (498)
...+.|+|.| +|+++++-...+.|++++..+ +.. +..+.. .......|+|+|+ +..|+.+ +.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCC-CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3567999999 888777655445788887654 322 222221 2456789999995 4444443 32
Q ss_pred --------CCcEEEEECCCC-------cEEE-EEec--CCCeEEEEEEcCCCcEEEEE
Q 010871 252 --------DKTVRVWELTKG-------DCIR-VIYG--VSSQLCIRFHPVNNNFLSVG 291 (498)
Q Consensus 252 --------dg~v~iwd~~~~-------~~~~-~~~~--~~~v~~i~~~~~~~~~l~~g 291 (498)
...|.-+++..+ +.+. .+.. ......++|.|++.-++.+|
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 124555554322 1111 1221 12467899999775444444
No 342
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.12 E-value=7.2 Score=38.36 Aligned_cols=198 Identities=8% Similarity=0.064 Sum_probs=104.9
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCCCceeEEee-cCCCCeEEEEEc--cCCCEEEEEeC-------CCcE---------EE-
Q 010871 199 SSDLLAYGA-SDGTLTVCTVSDPPKVIKLLN-GHSKDVTDFDFS--SNNQYIASSSM-------DKTV---------RV- 257 (498)
Q Consensus 199 ~~~~lasg~-~dg~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~s--~~~~~l~s~s~-------dg~v---------~i- 257 (498)
+|++|..-. .+..|-.-+++. .+..+.+. .....+.+++|- |+..|++.++. ||.. .+
T Consensus 141 DGrylfiNdkan~RvAri~l~~-~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDI-MKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTT-TEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCc-EeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 456777666 467788888887 55555544 466788999986 67788888875 3331 11
Q ss_pred --EECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeC---------------------------------------CC-
Q 010871 258 --WELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNA---------------------------------------NK- 295 (498)
Q Consensus 258 --wd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~---------------------------------------dg- 295 (498)
.|.++.+....+......-.+...++++ +.++.+. +|
T Consensus 220 ~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~-~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIVDGNLDNTDADYTGR-FAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp EEEETTTCSEEEEEEESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEEcCCccEEEEEEEcCCChhhcCCCCCCC-EEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 1222333322222111111222233222 2222221 11
Q ss_pred cEEEEEcCC----C-cEEEEeecCCCeEEEEEcCCCCEEEEEc-CCCeEEEEEccCCcccccccc-cccccCCCccceee
Q 010871 296 EITVFNFST----G-RIIKKLVVDSEVTSMDHDHTGQLLFCGD-AQGCIYSISMESHSGALSRSH-RHRTTGKRKCPVTT 368 (498)
Q Consensus 296 ~i~iwd~~~----~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~i~~ 368 (498)
.|.+.|.+. + ..+..+........+.++|+|+++++++ .+.++.++|++.......... .... ..+..+-..
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~-~~~ae~e~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRD-VIVGEPELG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGG-GEEECCBCC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCccc-ceEeeccCC
Confidence 355666554 2 2334445566677899999999887665 577899999874221110000 0000 000000011
Q ss_pred EEEeEeeEcCCCcEEEEEEcCCcEEEEEccc
Q 010871 369 VQYRSFSLLAGGPVLLTCTQDGNLSFFSVAL 399 (498)
Q Consensus 369 ~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~ 399 (498)
+--...++.++|....+..-|..|.-|++..
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 1111234448886666667899999999975
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.35 E-value=12 Score=38.88 Aligned_cols=278 Identities=13% Similarity=0.105 Sum_probs=136.0
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee-----cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN-----GHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG 263 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~-----~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~ 263 (498)
.|.++... ++ .|..|+.+ -|..++..+ ... ..+. .....|.++....++.+.+ |+.+| |..++..++
T Consensus 104 ~i~~i~~~--~g-~lWigt~~-Gl~~~~~~~-~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~ 175 (758)
T 3ott_A 104 DVRTMALQ--GD-TLWLGALN-GLYTYQLQS-RKL-TSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNG 175 (758)
T ss_dssp CEEEEEEE--TT-EEEEEETT-EEEEEETTT-CCE-EEECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTT
T ss_pred eEEEEEec--CC-cEEEEcCC-cceeEeCCC-CeE-EEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCC
Confidence 46766542 44 56666666 478888765 332 2331 1235688888877776544 55554 778887766
Q ss_pred cEEEEEecC-------CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee-cCCCeEEEEEcCCCCEEEEEcCC
Q 010871 264 DCIRVIYGV-------SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV-VDSEVTSMDHDHTGQLLFCGDAQ 335 (498)
Q Consensus 264 ~~~~~~~~~-------~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d 335 (498)
+... +... ..+.++.....+ ..|..|+. +-|..+|..+++...... ....|.++....+|.+.+ |+.+
T Consensus 176 ~~~~-~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~ 251 (758)
T 3ott_A 176 KFEG-IPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN 251 (758)
T ss_dssp EEEE-ECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT
T ss_pred ceEE-ecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC
Confidence 5432 2211 125666665533 44444553 468889987765432211 234588888888877555 4444
Q ss_pred CeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCC
Q 010871 336 GCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAP 415 (498)
Q Consensus 336 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 415 (498)
| +.+++.....-.................|.++... .+|. |..|+..| +.++..... ...........
T Consensus 252 G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D-----~~g~-lWiGT~~G-l~~~~~~~~----~~~~~~~~~~~ 319 (758)
T 3ott_A 252 G-LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFAD-----QEHN-IWLGTDYG-ISLSRYNSA----LQFIPISQITG 319 (758)
T ss_dssp E-EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEEC-----TTCC-EEEEESSS-EEEECCCC-----CEEEEHHHHSC
T ss_pred c-eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEc-----CCCC-EEEEeCCc-ccccccCCc----eeEEecccCCC
Confidence 4 67776543221111000000001122345555432 4554 55555666 544432110 01000000000
Q ss_pred ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeec-------CCCCCeEEEEEcCCCCEEEEEeCCCe
Q 010871 416 RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQ-------GHRFPVVAVAWNHGENLLASSDLYGI 488 (498)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~l~s~~~Dg~ 488 (498)
.... ..+..+....+|.+. .|+.+| +..++..++.......+. -....|.++.-..+|.+-+ |+ ++-
T Consensus 320 ~~~~--~~v~~i~~D~~g~lW-iGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~G 393 (758)
T 3ott_A 320 TGDG--NQFYSLFRDSKGFYW-FGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGS 393 (758)
T ss_dssp SCCC--CBEEEEEECTTCCEE-EEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTE
T ss_pred CCCC--ceEEEEEEcCCCCEE-EeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCc
Confidence 0000 011122222355544 445555 666765543211111111 0124588888888777554 44 456
Q ss_pred EEEeecCC
Q 010871 489 VIVWKRAK 496 (498)
Q Consensus 489 i~iW~~~~ 496 (498)
|..|+..+
T Consensus 394 L~~~~~~~ 401 (758)
T 3ott_A 394 INRYDYAT 401 (758)
T ss_dssp EEEEETTT
T ss_pred HhhcCcCC
Confidence 77787654
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.71 E-value=3 Score=42.97 Aligned_cols=109 Identities=10% Similarity=0.134 Sum_probs=60.7
Q ss_pred CCcEEEEEEcCC------cEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC--cEEEEEC
Q 010871 379 GGPVLLTCTQDG------NLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS--NVYFYDL 450 (498)
Q Consensus 379 ~~~~l~t~s~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg--~I~iwd~ 450 (498)
++..++.|+.++ .+.+||..+. .+............+.+... .++.+++.|+.++ .+.+||.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~-----~W~~~~~~p~~R~~h~~~~~-----~~~~iyv~GG~~~~~~v~~yd~ 520 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTR-----EWSMIKSLSHTRFRHSACSL-----PDGNVLILGGVTEGPAMLLYNV 520 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTT-----EEEECCCCSBCCBSCEEEEC-----TTSCEEEECCBCSSCSEEEEET
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCC-----cEEECCCCCCCcccceEEEE-----cCCEEEEECCCCCCCCEEEEEC
Confidence 777888887543 4677887653 12211112222222222211 2788888887654 6999999
Q ss_pred CCCCccceee---ecCCCCCeEEEEEcCC-CCEEEEEeC--C-----CeEEEeecCCC
Q 010871 451 AKPKHSCVNK---LQGHRFPVVAVAWNHG-ENLLASSDL--Y-----GIVIVWKRAKT 497 (498)
Q Consensus 451 ~~~~~~~~~~---~~~h~~~V~~l~~sp~-~~~l~s~~~--D-----g~i~iW~~~~~ 497 (498)
.+.....+.. +......-.++.+..+ +.+++.||. + ..+.+||+.+.
T Consensus 521 ~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 521 TEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 9866544332 2212222334555554 667777776 2 35888887654
No 345
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.17 E-value=16 Score=37.92 Aligned_cols=282 Identities=11% Similarity=0.057 Sum_probs=136.4
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
.|.++...+ ++..|..|.. +-|..++..+ ........-....|.++....+|.+. .|+.+| +.+++..+++....
T Consensus 192 ~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~~G-l~~~~~~~~~~~~~ 266 (758)
T 3ott_A 192 FVNSLLEDT-TRQCVWIGTE-GYLFQYFPST-GQIKQTEAFHNNSIKSLALDGNGDLL-AGTDNG-LYVYHNDTTPLQHI 266 (758)
T ss_dssp CEEEEEEET-TTTEEEEEEE-EEEEEEETTT-TEEEEEEEEEEEEEEEEEECTTCCEE-EEETTE-EEEECCTTSCCEEE
T ss_pred eeEEEEEEC-CCCEEEEEEC-CCCeEEcCCC-CeEEeccCCCCCeEEEEEEcCCCCEE-EEeCCc-eeEEecCCCcEEEE
Confidence 488888876 5665555554 3477888765 33222111123458888887777544 455544 78888776654322
Q ss_pred Eec--------CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee--------cCCCeEEEEEcCCCCEEEEE
Q 010871 269 IYG--------VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV--------VDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 269 ~~~--------~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------~~~~i~~l~~~~~~~~l~~~ 332 (498)
... ...|.++....++ .|-.|+..| +.++... .. ...+. ....|.++....+|.+.+.
T Consensus 267 ~~~~~~~~~l~~~~i~~i~~D~~g--~lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG- 340 (758)
T 3ott_A 267 IHDSRNIQSLTNNIIWNIFADQEH--NIWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFG- 340 (758)
T ss_dssp CCCTTCTTSCSCSCEEEEEECTTC--CEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-
T ss_pred EcCCCCcCcCCcCeEEEEEEcCCC--CEEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEe-
Confidence 211 1235566554433 455566666 5444322 21 11111 1346888988888875544
Q ss_pred cCCCeEEEEEccCCcccccccccc--cccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEe
Q 010871 333 DAQGCIYSISMESHSGALSRSHRH--RTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCS 410 (498)
Q Consensus 333 ~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~ 410 (498)
+.+| +..++.............. .........|.++... .+|.+ ..|+ ++-|..||..+..-. .....
T Consensus 341 t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d-----~~g~l-Wigt-~~GL~~~~~~~~~~~--~~~~~ 410 (758)
T 3ott_A 341 GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYED-----KEQQL-WIAT-DGSINRYDYATRQFI--HYNIV 410 (758)
T ss_dssp ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEEC-----TTSCE-EEEE-TTEEEEEETTTTEEE--EEEEE
T ss_pred eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEEC-----CCCCE-EEEe-CCcHhhcCcCCCcEE--EeecC
Confidence 4555 5555443211100000000 0001112235554432 55554 4455 456888887643211 11100
Q ss_pred eccCC-ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCC---Cccce---eeec---C-CCCCeEEEEEcCCCCE
Q 010871 411 LKLAP-RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP---KHSCV---NKLQ---G-HRFPVVAVAWNHGENL 479 (498)
Q Consensus 411 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~---~~~~~---~~~~---~-h~~~V~~l~~sp~~~~ 479 (498)
..... ....+ ..+....+| .|..|+..+-|.++|..+. ..... ..+. + ....|.++...++|.+
T Consensus 411 ~~~~~~~~~~v----~~i~~d~~g-~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l 485 (758)
T 3ott_A 411 DNTGTYNTNWT----YYIFEDTAG-QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNV 485 (758)
T ss_dssp CCC--CBSSSE----EEEEECTTS-EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCE
T ss_pred CCcCCCCCceE----EEEEEcCCC-CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCE
Confidence 00000 00111 111111234 4566776666888886421 00001 1111 1 1235889998888887
Q ss_pred EEEEeCCCeEEEeecCC
Q 010871 480 LASSDLYGIVIVWKRAK 496 (498)
Q Consensus 480 l~s~~~Dg~i~iW~~~~ 496 (498)
.+.++..+-|..++..+
T Consensus 486 Wi~~~t~~Gl~~~d~~~ 502 (758)
T 3ott_A 486 WVLLYNNKGIDKINPRT 502 (758)
T ss_dssp EEEETTCSSEEEEETTT
T ss_pred EEEccCCCCcEEEeCCC
Confidence 76444445577777654
No 346
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=91.04 E-value=8.1 Score=34.38 Aligned_cols=201 Identities=13% Similarity=0.045 Sum_probs=113.0
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEE---EcCCCCceeEEeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCC
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVC---TVSDPPKVIKLLNGHSKDVTDFDFSS-NNQYIASSSMDKTVRVWELTKG 263 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iw---d~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~s~dg~v~iwd~~~~ 263 (498)
+.+..+.... +.+.|+.-+..|.++-- ++......- .+. ....|..+.... +..+++.++.+|.++...+..-
T Consensus 24 D~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEECC-CSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcccc-cCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 4566655555 45566667777876643 332211111 133 345666664421 4679999999999999886542
Q ss_pred ------cEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC---------CcEEEEeecCCCeEEEEEcCCCCE
Q 010871 264 ------DCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST---------GRIIKKLVVDSEVTSMDHDHTGQL 328 (498)
Q Consensus 264 ------~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~---------~~~~~~~~~~~~i~~l~~~~~~~~ 328 (498)
.....+.....+..+.... +...++..+..|.+..+.... |.....+.....|..+...+++..
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPY 179 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSE
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCE
Confidence 2222233444555555544 445666777889988887532 222222334566777666666778
Q ss_pred EEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEE--EEcc
Q 010871 329 LFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSF--FSVA 398 (498)
Q Consensus 329 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~i--wd~~ 398 (498)
++..+..|.++...+...........-.... .....+..+... .+...++..+.+|.+.. ++..
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~-----~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI-----KEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE-----SSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe-----CCCCEEEEEcCCCeEEEeeeCHH
Confidence 9999999999988875432111100000001 122333333221 34456777788888877 7765
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=89.42 E-value=12 Score=33.80 Aligned_cols=140 Identities=8% Similarity=0.037 Sum_probs=79.3
Q ss_pred EEEecCCCCEEEEEeCC--------------CcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEe--CC--Cc
Q 010871 193 LKFGHMSSDLLAYGASD--------------GTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSS--MD--KT 254 (498)
Q Consensus 193 v~~sp~~~~~lasg~~d--------------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s--~d--g~ 254 (498)
--+++ ++++|+..... ..|+..++.. . ....+... .+..|++++++|+-.. .+ ..
T Consensus 58 ~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg-~-~~~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 58 MYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG-H-GSTVLDPD----PCIYASLIGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTS-C-CCEEEECS----CEEEEEEETTEEEEEEESSSSCEE
T ss_pred eeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCC-C-cceEeecC----CccEEEEeCCEEEEEeecCCCCce
Confidence 44577 77777776543 3566666664 2 23333322 1236778888888665 33 34
Q ss_pred EEEEECCCCcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEeecCCCeEEEEEcCCCCEEEEEcC
Q 010871 255 VRVWELTKGDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLVVDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 255 v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
|..-++.... ...+..+.. ..+.++++.+..+......|.+.++..+.....+. .... ..+.|++.+|+-...
T Consensus 131 Iy~~~~dGs~-~~~lt~~~~---~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 131 LYRIRIDGEE-KKKIKNHYL---FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEEEETTSCC-CEEEESSCC---CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEG
T ss_pred EEEEECCCCC-eEEEeCCCc---eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEc
Confidence 5555665433 333433322 34566676666665556788888887665443333 2222 345688888776654
Q ss_pred C--CeEEEEEccCC
Q 010871 335 Q--GCIYSISMESH 346 (498)
Q Consensus 335 d--g~i~i~d~~~~ 346 (498)
. ..|..-+++..
T Consensus 204 ~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 204 NRDNAIVHVNINNP 217 (302)
T ss_dssp GGTTEEEEECSSSC
T ss_pred CCCcEEEEEECCCC
Confidence 3 35666666543
No 348
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=88.82 E-value=14 Score=33.79 Aligned_cols=203 Identities=11% Similarity=0.077 Sum_probs=113.2
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcC---CC-----CceeEE---eecCCCCeEEEEEcc---CCCEEEEEeCCC
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVS---DP-----PKVIKL---LNGHSKDVTDFDFSS---NNQYIASSSMDK 253 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~---~~-----~~~~~~---~~~h~~~V~~l~~s~---~~~~l~s~s~dg 253 (498)
+.+..+.... ..+.|+.-+..|.++-.... .. +..+.. +. ....|.++...+ +..+++.++.+|
T Consensus 42 D~~~~~~~~~-t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 42 DIVAHFFVCS-THDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CEEEEEEEeC-CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 3444444444 56666666777776655432 11 111111 22 234566554433 467999999999
Q ss_pred cEEEEECCCC-------cEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC--CC---------cEEEEeecCC
Q 010871 254 TVRVWELTKG-------DCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS--TG---------RIIKKLVVDS 315 (498)
Q Consensus 254 ~v~iwd~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~--~~---------~~~~~~~~~~ 315 (498)
.|+.-.+... .....+.....+..+..... ...++..+..|.+..+... .- .....+....
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~-~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d 198 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSA-GDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDD 198 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECT-TCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTC
T ss_pred EEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecC-CCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCC
Confidence 9999876532 22223334455665555553 3556667788998888776 21 1111233456
Q ss_pred CeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccc--ccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEE
Q 010871 316 EVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALS--RSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLS 393 (498)
Q Consensus 316 ~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~ 393 (498)
.|.++...+.+..++..+..|.++...+........ ..............+..+... .+...++..+.+|.+.
T Consensus 199 ~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~-----~~~~~i~l~T~~G~~i 273 (327)
T 3uc1_A 199 RLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIV-----DDDSELYAVTSGGGVI 273 (327)
T ss_dssp CEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEE-----CTTCEEEEEEGGGCEE
T ss_pred EEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEe-----CCCccEEEEcCCCeEE
Confidence 688877777777899999999999887653221110 000000011112233333222 3455677778888877
Q ss_pred EEEcc
Q 010871 394 FFSVA 398 (498)
Q Consensus 394 iwd~~ 398 (498)
.++..
T Consensus 274 r~~~~ 278 (327)
T 3uc1_A 274 RTAAR 278 (327)
T ss_dssp EEEGG
T ss_pred EEehh
Confidence 77765
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.39 E-value=0.76 Score=45.02 Aligned_cols=81 Identities=10% Similarity=0.048 Sum_probs=61.8
Q ss_pred EEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC------c-------EEEEeecCCCeEEEEEcCCCCEEEE
Q 010871 265 CIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG------R-------IIKKLVVDSEVTSMDHDHTGQLLFC 331 (498)
Q Consensus 265 ~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~------~-------~~~~~~~~~~i~~l~~~~~~~~l~~ 331 (498)
.++.+........+..+|++..+++.|-.+.++.++|++.. + .+......-.....+|+++|....+
T Consensus 315 ~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTt 394 (638)
T 3sbq_A 315 FTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTT 394 (638)
T ss_dssp SEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEE
T ss_pred eEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEee
Confidence 33444445556678999988888888888999999998742 1 2444456677889999999977777
Q ss_pred EcCCCeEEEEEccC
Q 010871 332 GDAQGCIYSISMES 345 (498)
Q Consensus 332 ~~~dg~i~i~d~~~ 345 (498)
-.-|..|.-|++..
T Consensus 395 lfidSqvvkWni~~ 408 (638)
T 3sbq_A 395 LFIDSQVVKWNMEE 408 (638)
T ss_dssp ETTTTEEEEEEHHH
T ss_pred eeecceEEEEeccH
Confidence 78999999999864
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.23 E-value=19 Score=33.64 Aligned_cols=139 Identities=10% Similarity=0.036 Sum_probs=67.0
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEe--ecCCCCeEEEEEcc-CCCEEEEEeCCC----cEEEEECCCCcEEEEEec-
Q 010871 200 SDLLAYGASDGTLTVCTVSDPPKVIKLL--NGHSKDVTDFDFSS-NNQYIASSSMDK----TVRVWELTKGDCIRVIYG- 271 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~-~~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~- 271 (498)
...|..|...| +.+++....+.....+ ......|.+|++.| +...|+.++..| .|... ...++.-..+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCcc
Confidence 45777788777 5555543212222222 12345699999998 233444444444 33332 233332222211
Q ss_pred --------------CCCeEEEEEEcCC-CcEEEEEeCCCcEEEEEcCCCcEEEEee--------------------cCCC
Q 010871 272 --------------VSSQLCIRFHPVN-NNFLSVGNANKEITVFNFSTGRIIKKLV--------------------VDSE 316 (498)
Q Consensus 272 --------------~~~v~~i~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------------------~~~~ 316 (498)
...+.++++.|.+ ...+.++...+.|...+ ..++.-..+. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 0135567887643 44555555555554432 1222222221 1235
Q ss_pred eEEEEEcCC-CCEEEEEcCCCeEEEE
Q 010871 317 VTSMDHDHT-GQLLFCGDAQGCIYSI 341 (498)
Q Consensus 317 i~~l~~~~~-~~~l~~~~~dg~i~i~ 341 (498)
+.+|.++|. ...|+++..++.|+..
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s 204 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFES 204 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEE
Confidence 788999874 3445555545545443
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.05 E-value=14 Score=39.42 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=34.0
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 010871 233 DVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIY 270 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 270 (498)
.|.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56778888888899999999999999999999998865
No 352
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=86.20 E-value=19 Score=32.52 Aligned_cols=242 Identities=12% Similarity=0.050 Sum_probs=119.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEE---------EEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC---------
Q 010871 242 NNQYIASSSMDKTVRVWELTKGDCI---------RVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS--------- 303 (498)
Q Consensus 242 ~~~~l~s~s~dg~v~iwd~~~~~~~---------~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~--------- 303 (498)
+..++++.+.+|.|+--.+...+.. ..+.....+..+.... ....|+..+..|.++-+...
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 4557888899999987766542211 1123334444444443 33455555677876666542
Q ss_pred CCcEEE---EeecCCCeEEEEEc---CCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEc
Q 010871 304 TGRIIK---KLVVDSEVTSMDHD---HTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLL 377 (498)
Q Consensus 304 ~~~~~~---~~~~~~~i~~l~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s 377 (498)
.|..+. .+.....|.++... .++.+++..+..|.++...+...............+... ..+..+...
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~----- 154 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLT----- 154 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEE-----
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEe-----
Confidence 122211 12334556666442 345689999999999998775322211111010111222 344433332
Q ss_pred CCCcEEEEEEcCCcEEEEEcccccc-ce-eeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCC--
Q 010871 378 AGGPVLLTCTQDGNLSFFSVALEIQ-GY-LTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKP-- 453 (498)
Q Consensus 378 ~~~~~l~t~s~dg~i~iwd~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~-- 453 (498)
.....++..+.+|.+..++...-.. +. ........+...-..+.+.. ..++..+++.+..|.++-.++..-
T Consensus 155 ~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~-----~~~~~~ll~~T~~G~~Kr~~~~e~~~ 229 (307)
T 1zi0_A 155 SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIV-----PRGDGAILTATQNGYGKRTAVAEYPT 229 (307)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEC-----CCSSCEEEEEETTSEEEEECGGGSCC
T ss_pred CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEE-----ecCCCEEEEEEcCCceEEEEHHHhcc
Confidence 4556788889999988888753110 00 00001111222111221111 124567888899999888877421
Q ss_pred -----CccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 454 -----KHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 454 -----~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
++.....+....+.+..+....+..-|+..+.+|.+.-..++
T Consensus 230 ~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 230 KSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp CCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred CCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 111122233233555555443334445556667776655543
No 353
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=85.56 E-value=22 Score=32.72 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=80.7
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCce--eEEe----ecCCCCeEEEEEccC---CCEEEEE-e--CCCc
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV--IKLL----NGHSKDVTDFDFSSN---NQYIASS-S--MDKT 254 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~--~~~~----~~h~~~V~~l~~s~~---~~~l~s~-s--~dg~ 254 (498)
-...+.|+|.| ++.++++--..|.|++++... +.. +..+ .........|+++|+ +..|+.. + .++.
T Consensus 31 L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~-g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKT-GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcC-CCcEEEEEecCCEEEEEECCC-CcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 45678999999 888777766589999998654 322 2222 123567899999995 3344432 2 3445
Q ss_pred EEEEECCCC----------cEEE-EEec--CCCeEEEEEEcCCCcEEEEEe------------CCCcEEEEEcCCC----
Q 010871 255 VRVWELTKG----------DCIR-VIYG--VSSQLCIRFHPVNNNFLSVGN------------ANKEITVFNFSTG---- 305 (498)
Q Consensus 255 v~iwd~~~~----------~~~~-~~~~--~~~v~~i~~~~~~~~~l~~g~------------~dg~i~iwd~~~~---- 305 (498)
|.-|.+..+ +.+. .+.. ......+.|.|++.-++.+|. ..|.|.-.+....
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 666665541 1221 2221 123346899997643333332 1345555554321
Q ss_pred -----cEEEEeecCCCeEEEEEcCCCCEEEEE
Q 010871 306 -----RIIKKLVVDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 306 -----~~~~~~~~~~~i~~l~~~~~~~~l~~~ 332 (498)
..+....+ .....++|+|+|.++++=
T Consensus 189 nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 189 NPFPGSPVYSYGH-RNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CSSTTCCEEEBCC-SBCCEEEECTTCCEEEEE
T ss_pred CCCCCCeEEeeCC-CCcceEEECCCCCEEEEe
Confidence 12222233 346689999987765543
No 354
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=83.47 E-value=29 Score=32.31 Aligned_cols=153 Identities=11% Similarity=0.090 Sum_probs=86.8
Q ss_pred EccCCCEEEEEeCCCcEEEEECCC---------CcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC------
Q 010871 239 FSSNNQYIASSSMDKTVRVWELTK---------GDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS------ 303 (498)
Q Consensus 239 ~s~~~~~l~s~s~dg~v~iwd~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~------ 303 (498)
+-++..++++.+.+|.|+--.+.. |..-..++....+..+.... ....|+..+..|.++-+...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346777899999999998765421 22333344445555555554 34555556677877666532
Q ss_pred ---CCcEEEE---eecCCCeEEEEEcC---CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEe
Q 010871 304 ---TGRIIKK---LVVDSEVTSMDHDH---TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSF 374 (498)
Q Consensus 304 ---~~~~~~~---~~~~~~i~~l~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 374 (498)
.|..+.. +.....|.++.... .+.+|+.++..|.++...+...............+. ....+..+...
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~-~~d~lv~v~~~-- 158 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLD-EGDALVGVALT-- 158 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCC-TTCCEEEEEEE--
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeC-CCCEEEEEEEe--
Confidence 1222111 23345566655432 456899999999999988754332111111111111 13334333332
Q ss_pred eEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 375 SLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 375 ~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
.....++..+..|.+..|+..
T Consensus 159 ---~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 159 ---DGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp ---CSCCEEEEEETTSEEEEEEGG
T ss_pred ---CCCceEEEEeCCCeEEEEEcc
Confidence 456678888999998888765
No 355
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=80.02 E-value=34 Score=30.89 Aligned_cols=200 Identities=11% Similarity=0.075 Sum_probs=105.1
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCc-------EEE--EEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEE---
Q 010871 241 SNNQYIASSSMDKTVRVWELTKGD-------CIR--VIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRII--- 308 (498)
Q Consensus 241 ~~~~~l~s~s~dg~v~iwd~~~~~-------~~~--~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~--- 308 (498)
++..++++.+.+|.|+--.+..-+ -+. .+.....+..+.... ....++..+..|.++-+....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 456688899999999887654321 111 123334455444444 3345666678888777765321111
Q ss_pred ---------EEeecCCCeEEEEEcC---CCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeE
Q 010871 309 ---------KKLVVDSEVTSMDHDH---TGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSL 376 (498)
Q Consensus 309 ---------~~~~~~~~i~~l~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 376 (498)
..+.....|.++...+ +...++..+..|.++...+...............+.. ...+..+...
T Consensus 85 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~---- 159 (312)
T 1suu_A 85 SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIV---- 159 (312)
T ss_dssp ---CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEE----
T ss_pred CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEe----
Confidence 0122344555554433 4678889999999999887543221111111111112 3444444332
Q ss_pred cCCCcEEEEEEcCCcEEEEEcccc-ccce-eeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 377 LAGGPVLLTCTQDGNLSFFSVALE-IQGY-LTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 377 s~~~~~l~t~s~dg~i~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
..+..++..+.+|.+..+....- ..+. ..-.....+...-..+.+.. ..++..|++.+..|..+...+..
T Consensus 160 -~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~-----v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 160 -FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLS-----VKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp -CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEE-----CTTCSEEEEEETTSEEEEEEGGG
T ss_pred -CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEE-----ECCCCeEEEEECCCceEEEEHHH
Confidence 45667889999999999987641 0000 00011111111111121111 12566788889999999988753
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=78.39 E-value=36 Score=30.18 Aligned_cols=220 Identities=15% Similarity=0.052 Sum_probs=105.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEE-EEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-cEEE
Q 010871 232 KDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIR-VIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-RIIK 309 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~ 309 (498)
..|..++.... +.+.-. ||.|..|-....-.+. .......+..++... ...++. . ||.|+.|-.... ++-.
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCC
Confidence 35777776543 333335 8999999755321111 001123455555532 233444 4 899999976432 2111
Q ss_pred EeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcC
Q 010871 310 KLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQD 389 (498)
Q Consensus 310 ~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~d 389 (498)
.......|..++.... ..++-. +|.|+.|-.......-.. ......|..+.. .....+.-. |
T Consensus 97 P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~-------~~~~~~i~~i~~-------G~~~~~~l~-~ 158 (282)
T 3qhy_B 97 PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVP-------AEAQSGVTALDG-------GVYTALAVK-N 158 (282)
T ss_dssp CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCC-------GGGGSSEEEEEE-------CSSEEEEEE-T
T ss_pred CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCC-------ccCCCCeEEEEc-------ccCEEEEEE-C
Confidence 1122346777776543 334444 999999965432211110 111223444432 223333334 7
Q ss_pred CcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeE
Q 010871 390 GNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVV 469 (498)
Q Consensus 390 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~ 469 (498)
|.|..|-.....+. . ........+..+.+ ...+.++- .||.|+.|-...... +..-......|.
T Consensus 159 G~v~~wG~n~~gql--g--~p~~~~~~v~~i~~---------G~~hs~al-~~G~v~~wG~n~~gq--lg~p~~~~~~v~ 222 (282)
T 3qhy_B 159 GGVIAWGDNYFGQT--T--VPAEAQSGVDDVAG---------GIFHSLAL-KDGKVIAWGDNRYKQ--TTVPTEALSGVS 222 (282)
T ss_dssp TEEEEEECCTTSTT--S--CCGGGGSSEEEEEE---------CSSEEEEE-ETTEEEEEECCTTST--TCCCGGGGSSCC
T ss_pred CEEEEecCCCCCCC--C--CceecCCCeEEEEe---------cCCEEEEE-ECCeEEEEECCCCCC--CCCCcccCCCce
Confidence 88888866532111 0 01111122222222 23333333 589999997664321 111111123577
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 470 AVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 470 ~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.|+...... ++.. ||.|..|-..
T Consensus 223 ~i~~G~~h~-~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 223 AIASGEWYS-LALK--NGKVIAWGSS 245 (282)
T ss_dssp EEEECSSCE-EEEE--TTEEEEESTT
T ss_pred EEEcCCCEE-EEEE--CCEEEEecCC
Confidence 777654433 3333 8999999543
No 357
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=76.87 E-value=48 Score=30.89 Aligned_cols=143 Identities=13% Similarity=0.106 Sum_probs=80.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCc----------eeEEeec-CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPK----------VIKLLNG-HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG---- 263 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~----------~~~~~~~-h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~---- 263 (498)
.....+.-..||.|..|-....++ ....+.. ....+..++.+....+.+....||.|..|-....
T Consensus 61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG 140 (389)
T 3kci_A 61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 140 (389)
T ss_dssp ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTC
T ss_pred CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCC
Confidence 445566667788888886543111 1111221 2234555666666667777888999999965321
Q ss_pred ----c---EEEEEecC--CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-c--------E--EEEee--cCCCeEEEE
Q 010871 264 ----D---CIRVIYGV--SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-R--------I--IKKLV--VDSEVTSMD 321 (498)
Q Consensus 264 ----~---~~~~~~~~--~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~--------~--~~~~~--~~~~i~~l~ 321 (498)
. ....+... ..+..++. +....++-..+|.|+.|-.... + . ...+. ....|..++
T Consensus 141 ~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia 217 (389)
T 3kci_A 141 HGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIA 217 (389)
T ss_dssp SSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred CCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEE
Confidence 0 11111111 24555554 4455556668999999975321 1 1 11111 234577777
Q ss_pred EcCCCCEEEEEcCCCeEEEEEcc
Q 010871 322 HDHTGQLLFCGDAQGCIYSISME 344 (498)
Q Consensus 322 ~~~~~~~l~~~~~dg~i~i~d~~ 344 (498)
........++-..+|.|+.|-..
T Consensus 218 ~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 218 CGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp ECCSSCEEEEEETTTEEEEEECC
T ss_pred EcCCCcEEEEEccCCEEEEEeCC
Confidence 65434566777889999999643
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=75.74 E-value=51 Score=30.63 Aligned_cols=151 Identities=13% Similarity=0.077 Sum_probs=73.9
Q ss_pred ccEEEEEEecCCCCEEEEEeCCC--cEEEEEcCCCCceeEEeec--------------CCCCeEEEEEccC--CCEEEEE
Q 010871 188 AAVTILKFGHMSSDLLAYGASDG--TLTVCTVSDPPKVIKLLNG--------------HSKDVTDFDFSSN--NQYIASS 249 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg--~i~iwd~~~~~~~~~~~~~--------------h~~~V~~l~~s~~--~~~l~s~ 249 (498)
..|.+|++.|.+...|..++..| .-.||-....+..-..+.. +...|.+|++.|. ...|+.+
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g 134 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAG 134 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEE
Confidence 46899999984445555555444 0123333332332222211 1125778999862 4456666
Q ss_pred eCCCcEEEEECCCCcEEEEEec--------------------CCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEE
Q 010871 250 SMDKTVRVWELTKGDCIRVIYG--------------------VSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIK 309 (498)
Q Consensus 250 s~dg~v~iwd~~~~~~~~~~~~--------------------~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 309 (498)
...+.|...+ ..++.-..+.. ...+.++.+.|.+...+.++..++.|...+ ..++.-.
T Consensus 135 ~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~ 212 (394)
T 3b7f_A 135 TSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWK 212 (394)
T ss_dssp EETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCE
T ss_pred ecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCce
Confidence 5555444332 22332222211 124568888875444444454444443332 2233222
Q ss_pred Eeec--------------CCCeEEEEEcCC-CCEEEEEcCCCeEEEE
Q 010871 310 KLVV--------------DSEVTSMDHDHT-GQLLFCGDAQGCIYSI 341 (498)
Q Consensus 310 ~~~~--------------~~~i~~l~~~~~-~~~l~~~~~dg~i~i~ 341 (498)
.+.. ...+.++.+++. ...|+++...+ |+..
T Consensus 213 ~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 213 PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 2211 134889999986 35666666555 4443
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=74.23 E-value=46 Score=29.38 Aligned_cols=206 Identities=11% Similarity=0.038 Sum_probs=107.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEE---EECCCCcEEEEEecCCCeEEEEEEcC-CCcEEEEEeCCCcEEEEEcCCCc-
Q 010871 232 KDVTDFDFSSNNQYIASSSMDKTVRV---WELTKGDCIRVIYGVSSQLCIRFHPV-NNNFLSVGNANKEITVFNFSTGR- 306 (498)
Q Consensus 232 ~~V~~l~~s~~~~~l~s~s~dg~v~i---wd~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~~g~~dg~i~iwd~~~~~- 306 (498)
+.+..+.-.....+|+.-+.+|.++- |++..+.....+.....+..+.. .+ +...++..+.+|.++-..+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 34555444444445555566665543 23222211001333445655544 32 35678888999999999875532
Q ss_pred -----EEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccc--cccccccccCCCccceeeEEEeEeeEcCC
Q 010871 307 -----IIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGAL--SRSHRHRTTGKRKCPVTTVQYRSFSLLAG 379 (498)
Q Consensus 307 -----~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~s~~ 379 (498)
....+.....+..+........++..+..|.++.+....-...- ........+ .....|..+... .+
T Consensus 103 ~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L-~~~d~vv~~~~~-----~~ 176 (276)
T 3no0_A 103 KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL-EKNDETSGLRIW-----NG 176 (276)
T ss_dssp CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEE-----SS
T ss_pred hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc-CCCCEEEEEEEe-----CC
Confidence 22223345667777666667789999999999888764321100 000000001 112334443332 55
Q ss_pred CcEEEEEEcCCcEEEEEccccccce---eeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCCcEEE--EECCC
Q 010871 380 GPVLLTCTQDGNLSFFSVALEIQGY---LTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYF--YDLAK 452 (498)
Q Consensus 380 ~~~l~t~s~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~i--wd~~~ 452 (498)
+..++..+..|.++...+..-.... ...... ..... .+.+... .+...++..+.+|.+.. ++...
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~--lv~~~~~-----~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDT--LVDLIPI-----KEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSC--EEEEEEE-----SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCc--EEEEEEe-----CCCCEEEEEcCCCeEEEeeeCHHH
Confidence 6789999999999998875321100 000111 11111 1111111 23456777788888887 87654
No 360
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=74.09 E-value=52 Score=29.88 Aligned_cols=243 Identities=11% Similarity=0.063 Sum_probs=119.2
Q ss_pred cCCCEEEEEeCCCcEEEEECCCC----cEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC---------CCcE
Q 010871 241 SNNQYIASSSMDKTVRVWELTKG----DCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS---------TGRI 307 (498)
Q Consensus 241 ~~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~---------~~~~ 307 (498)
|+..++++.+.+|.|+--.+... ..-..+.....+..+.... ....|+..+..|.++-+... .|..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 45667888899998887654311 1111233344454444444 33455556677877666542 1221
Q ss_pred EEE---eecCCCeEEEEEcC---CCCEEEEEcCCCeEEEEEccCCcccc-cccccccccCCCccceeeEEEeEeeEcCCC
Q 010871 308 IKK---LVVDSEVTSMDHDH---TGQLLFCGDAQGCIYSISMESHSGAL-SRSHRHRTTGKRKCPVTTVQYRSFSLLAGG 380 (498)
Q Consensus 308 ~~~---~~~~~~i~~l~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~ 380 (498)
+.. +.....|.++...+ ++.+++.++..|.++...+....... ........+. ....+..+... ...
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~-e~d~lv~~~~~-----~~~ 155 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-NDDQVVDVHLT-----DGM 155 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-TTCCEEEEEEE-----CSC
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeC-CCCEEEEEEEe-----CCC
Confidence 111 22344566554333 25689999999999998875332211 0000000011 12344333322 456
Q ss_pred cEEEEEEcCCcEEEEEccccc-cce-eeEeEeeccCCceeeeEEEEeeeeeccCCC-EEEEEeCCCcEEEEECCCC----
Q 010871 381 PVLLTCTQDGNLSFFSVALEI-QGY-LTFRCSLKLAPRVHSIRASFCPLLSLEKGE-YIVAGSEDSNVYFYDLAKP---- 453 (498)
Q Consensus 381 ~~l~t~s~dg~i~iwd~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~dg~I~iwd~~~~---- 453 (498)
..++..+.+|.+..+....-. .+. ........+...-..+.+... +++. .|++.+..|..+..++..-
T Consensus 156 ~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~-----~~~~~~ll~vt~~G~gKr~~~~e~~~~~ 230 (323)
T 1wp5_A 156 NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLI-----TSKDESIVVATQRGAVKKMKLTEFEKAT 230 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEE-----CCTTCEEEEEETTSEEEEEEGGGSCCCC
T ss_pred CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEE-----cCCCcEEEEEECCCceEEEEHHHccccC
Confidence 678889999999888875311 000 000111112221112222111 1344 7888888998888777541
Q ss_pred ---Cccc-eeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 454 ---KHSC-VNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 454 ---~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
++.. ...+......+..+....++..++..+..|.+....++
T Consensus 231 Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 231 RAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp TTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred CCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 1111 11122222245543332333445556667776655543
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.12 E-value=11 Score=41.28 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=33.1
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Q 010871 233 DVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYG 271 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 271 (498)
.+.+++..++..+|++-+.|+++|||++.+++++.+..-
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 455666777888999999999999999999999988653
No 362
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=71.72 E-value=99 Score=32.11 Aligned_cols=149 Identities=13% Similarity=0.122 Sum_probs=81.3
Q ss_pred cccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecC-------CCCeEEEEEccCC-CEEEEEeCCCc----
Q 010871 187 KAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGH-------SKDVTDFDFSSNN-QYIASSSMDKT---- 254 (498)
Q Consensus 187 ~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h-------~~~V~~l~~s~~~-~~l~s~s~dg~---- 254 (498)
.+.|.+|+++|.+...+.++...+.|...+ +.++.-..+..+ ...|.+|++.|.. ..++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 457999999996667777788777665444 324443333332 2469999998843 34444433211
Q ss_pred EEEE-ECCCCcEEEEEecC----------CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC-CCcEEEEee-------cCC
Q 010871 255 VRVW-ELTKGDCIRVIYGV----------SSQLCIRFHPVNNNFLSVGNANKEITVFNFS-TGRIIKKLV-------VDS 315 (498)
Q Consensus 255 v~iw-d~~~~~~~~~~~~~----------~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~-------~~~ 315 (498)
-.|| ..+.|+.-..+... ..+..+++.|.+...++++...+.| |-.. .|+.-..+. ...
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTT
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCC
Confidence 2344 33445443333321 1234678888766677777644433 3322 233222221 124
Q ss_pred CeEEEEEcCC-CCEEEEEcCC-CeEE
Q 010871 316 EVTSMDHDHT-GQLLFCGDAQ-GCIY 339 (498)
Q Consensus 316 ~i~~l~~~~~-~~~l~~~~~d-g~i~ 339 (498)
.+..+.++|. ...++++..+ +.|+
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESSTTCEE
T ss_pred CeEEEEECCCCCCEEEEEEcCCCeEE
Confidence 5788999885 3455555544 4443
No 363
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=66.98 E-value=75 Score=28.85 Aligned_cols=241 Identities=11% Similarity=0.003 Sum_probs=125.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCC------CceeEEee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEE---ECCCC------
Q 010871 200 SDLLAYGASDGTLTVCTVSDP------PKVIKLLN-GHSKDVTDFDFSSNNQYIASSSMDKTVRVW---ELTKG------ 263 (498)
Q Consensus 200 ~~~lasg~~dg~i~iwd~~~~------~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~s~dg~v~iw---d~~~~------ 263 (498)
...+++-+.+|.|+--.+.+- +.-...+. ...+.+..+........|+.-+..|.+.-. ++..+
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 457788888888886654320 00011111 123445555555555566666667765443 44322
Q ss_pred cEEE---EEecCCCeEEEEEEcC--CCcEEEEEeCCCcEEEEEcCCCc-------EEEEeecCCCeEEEEEcCCCCEEEE
Q 010871 264 DCIR---VIYGVSSQLCIRFHPV--NNNFLSVGNANKEITVFNFSTGR-------IIKKLVVDSEVTSMDHDHTGQLLFC 331 (498)
Q Consensus 264 ~~~~---~~~~~~~v~~i~~~~~--~~~~l~~g~~dg~i~iwd~~~~~-------~~~~~~~~~~i~~l~~~~~~~~l~~ 331 (498)
..+. .+.....+..+...++ ...+++..+.+|.++-..+.... ....+.....+..+........|+.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 2211 1233445666555542 35688889999999998875422 1122334556666666566678888
Q ss_pred EcCCCeEEEEEcc--CCcccc--cccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccc-e--
Q 010871 332 GDAQGCIYSISME--SHSGAL--SRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQG-Y-- 404 (498)
Q Consensus 332 ~~~dg~i~i~d~~--~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~-~-- 404 (498)
.+..|.+..+... .-...- ........ ......|..+... ..+..|+..+..|.++.-.+..-... .
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~-L~~~d~Vv~~~~~-----~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~ 236 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMR-FNIDDRLLSLNVV-----REGTYLLVATSGGYAKRTAIEEYPVQGRGG 236 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSC-CCTTCCEEEEEEC-----CTTCEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeec-CCCCCEEEEEEEE-----CCCCEEEEEeCCCcEEEEEHHHccccCcCC
Confidence 8999999888765 211000 00000000 1123344444332 45678999999999998876532110 0
Q ss_pred eeEeEeeccCC-ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCC
Q 010871 405 LTFRCSLKLAP-RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAK 452 (498)
Q Consensus 405 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~ 452 (498)
.-. ....... .-..+.+... .+...++..+.+|.+.-++...
T Consensus 237 ~G~-~~~~l~~~~d~lv~~~~~-----~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 237 KGV-LTVMYDRRRGRLVGALIV-----DDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CCE-ESSCCCTTTCSEEEEEEE-----CTTCEEEEEEGGGCEEEEEGGG
T ss_pred CcE-EEEEecCCCCeEEEEEEe-----CCCccEEEEcCCCeEEEEehhh
Confidence 000 1111111 1111211111 2455677777888888887653
No 364
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=63.25 E-value=88 Score=28.33 Aligned_cols=202 Identities=12% Similarity=0.058 Sum_probs=107.3
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCC---C-----CceeE---EeecCCCCeEEEEEcc---CCCEEEEEeCCCc
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSD---P-----PKVIK---LLNGHSKDVTDFDFSS---NNQYIASSSMDKT 254 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~---~-----~~~~~---~~~~h~~~V~~l~~s~---~~~~l~s~s~dg~ 254 (498)
.+..+.... +.+.|+..+..|.+.-+.... . +..+. .+. ....|.++...+ ++.+|+.++.+|.
T Consensus 40 ~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 40 RLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp CEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred EEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 344444444 566777777888876655432 1 11111 122 234466543333 2568999999999
Q ss_pred EEEEECCC--------CcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-------cEEEE--eecCCCe
Q 010871 255 VRVWELTK--------GDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-------RIIKK--LVVDSEV 317 (498)
Q Consensus 255 v~iwd~~~--------~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-------~~~~~--~~~~~~i 317 (498)
++.-.+.. |.....+.....+..+.... +...++..+.+|.+..+....- +-+.- +.....|
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~-~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~V 196 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTD-GMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYI 196 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEEC-SCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCE
T ss_pred EEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEE
Confidence 99988741 22222233335565555554 3445666778999888876421 11222 2344567
Q ss_pred EEEEEcCCCC-EEEEEcCCCeEEEEEccCCccccc--c-cccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEE
Q 010871 318 TSMDHDHTGQ-LLFCGDAQGCIYSISMESHSGALS--R-SHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLS 393 (498)
Q Consensus 318 ~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--~-~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~ 393 (498)
.++...+++. .+++.+..|..+..++......-. . ....+........+..+... .++..++..+..|.+.
T Consensus 197 v~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v-----~~~~~i~~it~~g~~i 271 (323)
T 1wp5_A 197 VSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVA-----QDSDTIYLQTEKSFIE 271 (323)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEE-----CTTCEEEEEETTSCEE
T ss_pred EEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEe-----CCCCeEEEEeCCCeEE
Confidence 7765544455 788889999988877754211100 0 00000011111133322211 3455677777888777
Q ss_pred EEEcc
Q 010871 394 FFSVA 398 (498)
Q Consensus 394 iwd~~ 398 (498)
.+.+.
T Consensus 272 r~~~~ 276 (323)
T 1wp5_A 272 TIKVG 276 (323)
T ss_dssp EEEGG
T ss_pred EEEhh
Confidence 66665
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=59.55 E-value=15 Score=37.35 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=30.7
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Q 010871 233 DVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRVIYG 271 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 271 (498)
.|.++.+ +..+|++-+.|+++|+|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555554 467999999999999999999999888765
No 366
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=54.05 E-value=1.4e+02 Score=27.70 Aligned_cols=274 Identities=12% Similarity=0.089 Sum_probs=120.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCCce-------eEE---eec-CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC------
Q 010871 201 DLLAYGASDGTLTVCTVSDPPKV-------IKL---LNG-HSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKG------ 263 (498)
Q Consensus 201 ~~lasg~~dg~i~iwd~~~~~~~-------~~~---~~~-h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~------ 263 (498)
..++.-..||.|..|-....+++ ... +.. ....|..++. .....+....||.|..|-....
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 34444556777777765532211 111 110 1123444443 2345666678899999964421
Q ss_pred --cEE---EEEecCC--CeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-c----------EEEEee--cCCCeEEEEEc
Q 010871 264 --DCI---RVIYGVS--SQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-R----------IIKKLV--VDSEVTSMDHD 323 (498)
Q Consensus 264 --~~~---~~~~~~~--~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~----------~~~~~~--~~~~i~~l~~~ 323 (498)
... ..+.... .+..+.... +....++-..+|.|+.|-.... + ....+. ....|..++..
T Consensus 89 ~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G 167 (389)
T 3kci_A 89 GTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 167 (389)
T ss_dssp SSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC
Confidence 111 1111111 233344444 5556666678999999965321 0 111111 12356666653
Q ss_pred CCCCEEEEEcCCCeEEEEEccCCccccc-----ccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 324 HTGQLLFCGDAQGCIYSISMESHSGALS-----RSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 324 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
....++-..+|.|+.|-.......-. ...+..........|..+.. .......+.-..||.|..|-..
T Consensus 168 --~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~-----G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 168 --GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIAC-----GSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp --SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE-----CCSSCEEEEEETTTEEEEEECC
T ss_pred --cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEE-----cCCCcEEEEEccCCEEEEEeCC
Confidence 34566667899999996532111000 00000000011112333322 1223566667788998888654
Q ss_pred cccc------ceeeEeEeeccCC--ceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCC------cc---ceeee
Q 010871 399 LEIQ------GYLTFRCSLKLAP--RVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPK------HS---CVNKL 461 (498)
Q Consensus 399 ~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~------~~---~~~~~ 461 (498)
...+ ............. .+..+.+ ...+.++-..+|.|+.|-..... .. .-..+
T Consensus 241 ~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~---------G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v 311 (389)
T 3kci_A 241 DYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC---------GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQV 311 (389)
T ss_dssp GGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE---------ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEEC
T ss_pred CCCCCCCCCCCCccccEEecccCCCcEEEEeC---------CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEe
Confidence 3111 0001111111111 1222211 34455555778899999764310 00 00111
Q ss_pred cC-CCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 462 QG-HRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 462 ~~-h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.. ....|..|+... ...+....||.|+.|=..
T Consensus 312 ~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 312 QGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp GGGTTCCEEEEEECS--SEEEEEETTCCEEEEECC
T ss_pred ccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCC
Confidence 11 123466666542 344445678999999654
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=54.04 E-value=1.2e+02 Score=27.14 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=92.9
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCce-----------eEEeecCCCCeEEEEEcc---CCCEEEEEeCCCc
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKV-----------IKLLNGHSKDVTDFDFSS---NNQYIASSSMDKT 254 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~-----------~~~~~~h~~~V~~l~~s~---~~~~l~s~s~dg~ 254 (498)
.+..+.... +.+.++..+..|.++-.....-+.. ...+. ....|.++...+ +..+|+..+..|.
T Consensus 48 ~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~ 125 (312)
T 1suu_A 48 EIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGK 125 (312)
T ss_dssp CEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred EEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCe
Confidence 344444444 5667777888898877766421111 00122 223455554332 4568888999999
Q ss_pred EEEEECCC-------CcEEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-------cEEE--EeecCCCeE
Q 010871 255 VRVWELTK-------GDCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-------RIIK--KLVVDSEVT 318 (498)
Q Consensus 255 v~iwd~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-------~~~~--~~~~~~~i~ 318 (498)
++.-.+.. |.....+.....+..+.... +...++..+.+|.+..+....- +-+. .+.....|.
T Consensus 126 ~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv 204 (312)
T 1suu_A 126 IARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFV 204 (312)
T ss_dssp EEEEEGGGGCC----CEECBCCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEE
T ss_pred EEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEE
Confidence 99887742 22222233445566665554 3456777779999998887431 1122 223455677
Q ss_pred EEEEcCCCCEEEEEcCCCeEEEEEccC
Q 010871 319 SMDHDHTGQLLFCGDAQGCIYSISMES 345 (498)
Q Consensus 319 ~l~~~~~~~~l~~~~~dg~i~i~d~~~ 345 (498)
.+....++..+++.+..|..+...+..
T Consensus 205 ~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 205 KVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEECCCCeEEEEECCCceEEEEHHH
Confidence 776666667788889999999888754
No 368
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=51.48 E-value=1.3e+02 Score=26.81 Aligned_cols=192 Identities=15% Similarity=0.047 Sum_probs=102.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcee---------EEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC---CC----
Q 010871 199 SSDLLAYGASDGTLTVCTVSDPPKVI---------KLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEL---TK---- 262 (498)
Q Consensus 199 ~~~~lasg~~dg~i~iwd~~~~~~~~---------~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~---~~---- 262 (498)
+..++++.+.+|.|+--.+.. .... ..++. .+.+..+........|+..+..|.+.-... ..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~-~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSE-YEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC----------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHH-hhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 456788889999998776653 1111 11222 234444444445556777777787555443 22
Q ss_pred --CcEEE---EEecCCCeEEEEEEc--CCCcEEEEEeCCCcEEEEEcCCCc-----EEE--EeecCCCeEEEEEcCCCCE
Q 010871 263 --GDCIR---VIYGVSSQLCIRFHP--VNNNFLSVGNANKEITVFNFSTGR-----IIK--KLVVDSEVTSMDHDHTGQL 328 (498)
Q Consensus 263 --~~~~~---~~~~~~~v~~i~~~~--~~~~~l~~g~~dg~i~iwd~~~~~-----~~~--~~~~~~~i~~l~~~~~~~~ 328 (498)
|..+. .+.....+..+...+ .+..+++..+..|.++-..+.... -+. .+.....+..+........
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE 159 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCE
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCE
Confidence 22111 133344566554432 234567778899999998774221 111 2223456666555555667
Q ss_pred EEEEcCCCeEEEEEccCCccccc--ccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEcc
Q 010871 329 LFCGDAQGCIYSISMESHSGALS--RSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVA 398 (498)
Q Consensus 329 l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~ 398 (498)
++..+.+|.+..+....-...-. ...... .......|.++... .++..+++.+..|.++-.++.
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i-~L~~~d~Vv~~~~~-----~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGI-RLGEGDKVVSLIVP-----RGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECC-CCCTTCCEEEEECC-----CSSCEEEEEETTSEEEEECGG
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeE-EeCCCCEEEEEEEe-----cCCCEEEEEEcCCceEEEEHH
Confidence 88888999988887643211100 000000 01122344444321 445678899999999988874
No 369
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=50.77 E-value=1.7e+02 Score=27.93 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCC-EEEEEcCCCeEEEEEcc
Q 010871 315 SEVTSMDHDHTGQ-LLFCGDAQGCIYSISME 344 (498)
Q Consensus 315 ~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~ 344 (498)
...+.|+|.|++. .|+++...|.|++++.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4568899999996 56666788999999643
No 370
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=42.74 E-value=2.1e+02 Score=26.55 Aligned_cols=58 Identities=7% Similarity=0.092 Sum_probs=39.1
Q ss_pred cEEEEECCCC--cEEEEEecC-------CCeEEEEEE---cC---CCcEEEEE-eCCCcEEEEEcCCCcEEEEe
Q 010871 254 TVRVWELTKG--DCIRVIYGV-------SSQLCIRFH---PV---NNNFLSVG-NANKEITVFNFSTGRIIKKL 311 (498)
Q Consensus 254 ~v~iwd~~~~--~~~~~~~~~-------~~v~~i~~~---~~---~~~~l~~g-~~dg~i~iwd~~~~~~~~~~ 311 (498)
.|.+||+.+. +.++++... +....+++. +. +..++..+ ...+.|.|+|+.+++..+.+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 5778888888 888887653 234566666 21 13444444 35678999999999877655
No 371
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=41.81 E-value=3e+02 Score=28.08 Aligned_cols=236 Identities=10% Similarity=0.055 Sum_probs=108.3
Q ss_pred EccCCCEEEE-EeCC----CcEEEEECCCCcEEEE-EecCC-C-------eEEEEEEcCCCcEEEEE----------eCC
Q 010871 239 FSSNNQYIAS-SSMD----KTVRVWELTKGDCIRV-IYGVS-S-------QLCIRFHPVNNNFLSVG----------NAN 294 (498)
Q Consensus 239 ~s~~~~~l~s-~s~d----g~v~iwd~~~~~~~~~-~~~~~-~-------v~~i~~~~~~~~~l~~g----------~~d 294 (498)
++|++++++. -|.. ..++++|+.+++.+.. +.... . ...++|.. +..++++. +..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCCCCCCcCcCCCC
Confidence 7788876553 3333 3699999999976531 11000 0 02347764 33444432 122
Q ss_pred CcEEEEEcCCCc----EEEEeecCCCeEEEEEcCCCCE-----EEEEc---CCCeEEEEEccCCcccccccccccccCCC
Q 010871 295 KEITVFNFSTGR----IIKKLVVDSEVTSMDHDHTGQL-----LFCGD---AQGCIYSISMESHSGALSRSHRHRTTGKR 362 (498)
Q Consensus 295 g~i~iwd~~~~~----~~~~~~~~~~i~~l~~~~~~~~-----l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 362 (498)
..|+.|.+-+.. .+..-.....-.+...++++++ ++..+ ....+++.+.+...+....... ...
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~ 291 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM----PSD 291 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS----CTT
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec----CCc
Confidence 468888876542 2222222233344556666662 33322 2245666665433333211110 111
Q ss_pred ccceeeEEEeEeeEcCCCcEEEEE----------EcCCcEEEEEccccccc---eeeEeEeeccCCceeeeEEEEeeeee
Q 010871 363 KCPVTTVQYRSFSLLAGGPVLLTC----------TQDGNLSFFSVALEIQG---YLTFRCSLKLAPRVHSIRASFCPLLS 429 (498)
Q Consensus 363 ~~~i~~~~~~~~~~s~~~~~l~t~----------s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (498)
..+ +.. .++.+++.. ...+.|.+.++.....+ ................-.+.+.
T Consensus 292 -~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 358 (711)
T 4hvt_A 292 -ATL--QGS------FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTT---- 358 (711)
T ss_dssp -CEE--EEE------ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEEC----
T ss_pred -ceE--eee------ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEE----
Confidence 111 111 234443322 24667888888754211 1111111111121111122332
Q ss_pred ccCCCEEEEEeCCCc--EEEEECCCCCccce--eeecCCCCCeEEEEEcCCCC-EEEEEeC---CCeEEEeecC
Q 010871 430 LEKGEYIVAGSEDSN--VYFYDLAKPKHSCV--NKLQGHRFPVVAVAWNHGEN-LLASSDL---YGIVIVWKRA 495 (498)
Q Consensus 430 ~~~~~~l~~gs~dg~--I~iwd~~~~~~~~~--~~~~~h~~~V~~l~~sp~~~-~l~s~~~---Dg~i~iW~~~ 495 (498)
.+.++++...++. |+++++.++..... ..+.. .+.|..+.+.+++. ++++.+. -+.+..+++.
T Consensus 359 --~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 359 --KDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp --SSCEEEEEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred --CCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 3467777777764 66777655421111 12322 24566666666654 4444432 2566666654
No 372
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.76 E-value=3.5e+02 Score=28.77 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=19.3
Q ss_pred CCCcEEEEEEcCCcEEEEEcccc
Q 010871 378 AGGPVLLTCTQDGNLSFFSVALE 400 (498)
Q Consensus 378 ~~~~~l~t~s~dg~i~iwd~~~~ 400 (498)
++..++++-+.|+++|+|++.++
T Consensus 245 ~~~~~lftl~~D~~LRiWsl~t~ 267 (950)
T 4gq2_M 245 STYNVLVMLSLDYKLKVLDLSTN 267 (950)
T ss_dssp TTTTEEEEEETTCEEEEEETTTT
T ss_pred CCCcEEEEEECCCEEEEEECCCC
Confidence 67778888999999999988765
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.00 E-value=40 Score=36.86 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEeecCCC
Q 010871 467 PVVAVAWNHGENLLASSDLYGIVIVWKRAKT 497 (498)
Q Consensus 467 ~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~~~ 497 (498)
.+.+++..++..+|++-+.|+++|||++.++
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~ 269 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN 269 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTT
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCC
Confidence 3455666778899999999999999999876
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=39.42 E-value=95 Score=30.89 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=39.7
Q ss_pred cEEEEEEecCCCCEEEEEeCC------------CcEEEEEcCCCCceeEEeecC-CCCeEEEEEccCCCEEEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASD------------GTLTVCTVSDPPKVIKLLNGH-SKDVTDFDFSSNNQYIASS 249 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~d------------g~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~ 249 (498)
..--|+|+| .|.+++.-..+ ..+.+.+..+ ++..+.+.++ ...++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-CCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCC-CeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 346689999 78866654432 2344445444 5666666654 4689999999999887765
No 375
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=39.31 E-value=3.4e+02 Score=27.93 Aligned_cols=148 Identities=7% Similarity=-0.008 Sum_probs=75.9
Q ss_pred ccccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeec------------CCCCeEEEEEccC-CCEEEEEeCC
Q 010871 186 CKAAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNG------------HSKDVTDFDFSSN-NQYIASSSMD 252 (498)
Q Consensus 186 h~~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~------------h~~~V~~l~~s~~-~~~l~s~s~d 252 (498)
-.+.|.+|+++|.+...+.++...|.|. ...+.++.-..+.. ....|.+|++.|. ...++.+..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~--~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTY--RWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEE--EEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEE--EECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 3568999999996667777777666554 33333443333221 2245899999883 3344433321
Q ss_pred -----CcEEEEE-CCCCcEEEEEecC--------CC-e-EEEEEEcCCCcEEEEEeCCCcEEEEEcCCCcEEEEee----
Q 010871 253 -----KTVRVWE-LTKGDCIRVIYGV--------SS-Q-LCIRFHPVNNNFLSVGNANKEITVFNFSTGRIIKKLV---- 312 (498)
Q Consensus 253 -----g~v~iwd-~~~~~~~~~~~~~--------~~-v-~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---- 312 (498)
....||. .+.|+.-..+... .. + ..++++|.+...+.++...+.|. .....|+.-..+.
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLPD 175 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSCC
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCcc
Confidence 1133443 3344433332211 11 1 35788887666666665544332 2222233222221
Q ss_pred ---cCCCeEEEEEcCCC-CEEEEEcCCC
Q 010871 313 ---VDSEVTSMDHDHTG-QLLFCGDAQG 336 (498)
Q Consensus 313 ---~~~~i~~l~~~~~~-~~l~~~~~dg 336 (498)
....+..|+++|.. ..++++..++
T Consensus 176 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 176 SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 11347788998754 3455554444
No 376
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=36.78 E-value=2.2e+02 Score=24.96 Aligned_cols=239 Identities=13% Similarity=0.026 Sum_probs=114.9
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLNGHSKDVTDFDFSSNNQYIASSSMDKTVRVWELTKGDCIRV 268 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (498)
.|..|+.. ....+.-. ||.|..|-....+++-.. ......|..++.......++ . ||.|..|-....-.+-.
T Consensus 25 ~i~~ia~G---~~h~~~l~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGG---YFHGLALK-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEEC---SSEEEEEE-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCC
T ss_pred CCcEEEeC---CCeEEEEE-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCC
Confidence 34555543 23333335 899999987653322111 11233577777654432232 4 89999997653211100
Q ss_pred -EecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCC-CcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCC
Q 010871 269 -IYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFST-GRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESH 346 (498)
Q Consensus 269 -~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~ 346 (498)
......+..++.-. ...++-. +|.|+.|-... ++.-........|..++..... .++-. +|.|+.|-....
T Consensus 97 P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~ 169 (282)
T 3qhy_B 97 PAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYF 169 (282)
T ss_dssp CGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTT
T ss_pred CcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCC
Confidence 01123566666543 3344445 99999997644 2221111233567777664432 22223 799999965432
Q ss_pred cccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEee
Q 010871 347 SGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCP 426 (498)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (498)
...-.. ......|..+.. .....+.- .||.|..|-.....+. . ........+..+.+
T Consensus 170 gqlg~p-------~~~~~~v~~i~~-------G~~hs~al-~~G~v~~wG~n~~gql--g--~p~~~~~~v~~i~~---- 226 (282)
T 3qhy_B 170 GQTTVP-------AEAQSGVDDVAG-------GIFHSLAL-KDGKVIAWGDNRYKQT--T--VPTEALSGVSAIAS---- 226 (282)
T ss_dssp STTSCC-------GGGGSSEEEEEE-------CSSEEEEE-ETTEEEEEECCTTSTT--C--CCGGGGSSCCEEEE----
T ss_pred CCCCCc-------eecCCCeEEEEe-------cCCEEEEE-ECCeEEEEECCCCCCC--C--CCcccCCCceEEEc----
Confidence 221110 011233444432 22333333 6999999975532111 0 00111122222222
Q ss_pred eeeccCCCEEEEEeCCCcEEEEECCCCCccceeeecCCCCCeEEEEEcCCC
Q 010871 427 LLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGE 477 (498)
Q Consensus 427 ~~~~~~~~~l~~gs~dg~I~iwd~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 477 (498)
...+.++-. ||.|+.|-...... +.. ...|..|+.....
T Consensus 227 -----G~~h~~al~-~g~v~~wG~n~~gq--~~v----~~~v~~iaaG~~h 265 (282)
T 3qhy_B 227 -----GEWYSLALK-NGKVIAWGSSRTAP--SSV----QSGVSSIEAGPNA 265 (282)
T ss_dssp -----CSSCEEEEE-TTEEEEESTTCCCC--GGG----SSCEEEEEECSSC
T ss_pred -----CCCEEEEEE-CCEEEEecCCCCcc--ccC----CCCcEEEEECcCe
Confidence 233333334 99999997765322 211 2357777766543
No 377
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=36.34 E-value=60 Score=33.07 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=29.2
Q ss_pred ccEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCceeEEee
Q 010871 188 AAVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPKVIKLLN 228 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~~~~~~~ 228 (498)
..|.|+.+ +..+|++-+.|.++|+|++.+ +.++....
T Consensus 222 ~~Is~~~~---~~~fLftL~~Dh~LRiWsL~t-~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLF---HERYLIVLTQNCHLKIWDLTS-FTLIQDYD 258 (729)
T ss_dssp CEEEEEEE---TTTEEEEEETTCEEEEEETTT-TEEEEEEE
T ss_pred ceEEEecc---CCcEEEEEEcCCeEEEEEcCC-CceEEeec
Confidence 35776665 467999999999999999998 66665544
No 378
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=32.42 E-value=2e+02 Score=28.41 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=40.2
Q ss_pred ccEEEEEEecCCCCEEEEEeC------------CCcEEEEEcCCCCceeEEeecC-CCCeEEEEEccCCCEEEEEe
Q 010871 188 AAVTILKFGHMSSDLLAYGAS------------DGTLTVCTVSDPPKVIKLLNGH-SKDVTDFDFSSNNQYIASSS 250 (498)
Q Consensus 188 ~~V~~v~~sp~~~~~lasg~~------------dg~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~s 250 (498)
+....|.|.+ +|.+.++... ...|..++..+ +++...+.+. ...++.++|+||++.|+.+-
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4567899998 7776663321 11455555554 5555555543 45789999999999887663
No 379
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=32.03 E-value=2.5e+02 Score=24.24 Aligned_cols=149 Identities=15% Similarity=-0.002 Sum_probs=74.4
Q ss_pred EEEEEeCCCcEEEEECCCCc-EEEEEecCCCeEEEEEEcCCCcEEEEEeCCCcEEEEEcC---C----CcEE---EEeec
Q 010871 245 YIASSSMDKTVRVWELTKGD-CIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFS---T----GRII---KKLVV 313 (498)
Q Consensus 245 ~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~---~----~~~~---~~~~~ 313 (498)
.+++.+.+|.|+--...... ....+.....+..+...... ..|+..+..|.++-+... . |..+ ..+..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~-~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSN-QPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETT-SCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCC-CEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 34556666666554432211 00112333444444333323 334445577776655432 1 2211 11233
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCcccccccccccccCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEE
Q 010871 314 DSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLS 393 (498)
Q Consensus 314 ~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~ 393 (498)
...|.++....++.+|+.++..|.++...+...............+. ....+..+... ..++..++..+.+|.+.
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~-~~d~lv~~~~~----~~~~~~i~l~T~~G~~l 157 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-ENAHVMPPVVI----EDASDMLLAITQAGRML 157 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCC-TTCCBCCCEEC----CCTTCEEEEEETTSEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEEC-CCCEEEEEEEe----cCCCCEEEEEcCCCeEE
Confidence 55677775444567788999999999998754321111111111111 11233222211 02456788999999999
Q ss_pred EEEccc
Q 010871 394 FFSVAL 399 (498)
Q Consensus 394 iwd~~~ 399 (498)
.+.+..
T Consensus 158 rf~~~e 163 (256)
T 1zvt_A 158 MFPVSD 163 (256)
T ss_dssp EEEGGG
T ss_pred EEEHHH
Confidence 998763
No 380
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=31.51 E-value=3.1e+02 Score=25.23 Aligned_cols=161 Identities=9% Similarity=0.015 Sum_probs=85.9
Q ss_pred CCcEEEEEeCCCcEEEEEcCC---------CcEEEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccc-c-cc
Q 010871 284 NNNFLSVGNANKEITVFNFST---------GRIIKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGA-L-SR 352 (498)
Q Consensus 284 ~~~~l~~g~~dg~i~iwd~~~---------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~-~~ 352 (498)
...++++.+.+|.|+--.+.. +.....+.....+..+........|+..+..|.++.+....-... . ..
T Consensus 6 ~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~ 85 (370)
T 3l6v_A 6 PEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNAR 85 (370)
T ss_dssp CCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred CCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccC
Confidence 345788888999999876532 223334455667777776667778888888998877764321100 0 00
Q ss_pred cccccc--cCCCccceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeec
Q 010871 353 SHRHRT--TGKRKCPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSL 430 (498)
Q Consensus 353 ~~~~~~--~~~~~~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (498)
...... .......|..+... .-...+.+|+.++..|.++...+..-............+...-..+.+...
T Consensus 86 G~~i~~ll~L~~~e~Iv~~~~~--~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~----- 158 (370)
T 3l6v_A 86 GRPIINWIPLESGERVQAVLPV--REYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALT----- 158 (370)
T ss_dssp CEEGGGSCCCCTTCCEEEEEEE--SCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEE-----
T ss_pred CcCHhhccCCCCCCEEEEEEEe--ccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEe-----
Confidence 000000 01122344443221 000245689999999999998876422111001111112222222222222
Q ss_pred cCCCEEEEEeCCCcEEEEECC
Q 010871 431 EKGEYIVAGSEDSNVYFYDLA 451 (498)
Q Consensus 431 ~~~~~l~~gs~dg~I~iwd~~ 451 (498)
.....|+..+.+|.+..|...
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGG
T ss_pred CCCceEEEEeCCCeEEEEEcc
Confidence 245678888889988888765
No 381
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=31.18 E-value=3.5e+02 Score=25.76 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=59.4
Q ss_pred CCeEEEEEccCCC-EEEEEeCCCcEEEEECCCC---cEEEEEe-----c-----CCCeEEEEEEcC---CCcEEEEEeC-
Q 010871 232 KDVTDFDFSSNNQ-YIASSSMDKTVRVWELTKG---DCIRVIY-----G-----VSSQLCIRFHPV---NNNFLSVGNA- 293 (498)
Q Consensus 232 ~~V~~l~~s~~~~-~l~s~s~dg~v~iwd~~~~---~~~~~~~-----~-----~~~v~~i~~~~~---~~~~l~~g~~- 293 (498)
..-..|+|.|+|. .|+.+...|.|++++.... ..+..+. + ......++|+|+ ++.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4557899999996 4555667899999975432 1222221 1 245778999985 2333333221
Q ss_pred -C----------CcEEEEEcCC----------CcEEEEee---cCCCeEEEEEcCCCCEEEEEcC
Q 010871 294 -N----------KEITVFNFST----------GRIIKKLV---VDSEVTSMDHDHTGQLLFCGDA 334 (498)
Q Consensus 294 -d----------g~i~iwd~~~----------~~~~~~~~---~~~~i~~l~~~~~~~~l~~~~~ 334 (498)
+ ..|.-|.+.. .+.+..+. .......|+|.|+|.++++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344455432 22333332 2345678999999987766554
No 382
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=29.43 E-value=3.4e+02 Score=25.09 Aligned_cols=279 Identities=13% Similarity=0.071 Sum_probs=131.2
Q ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEcCCCCc----------eeEEeec-CCCCeEEEEEccCCCEEEEEeCC-CcEE
Q 010871 189 AVTILKFGHMSSDLLAYGASDGTLTVCTVSDPPK----------VIKLLNG-HSKDVTDFDFSSNNQYIASSSMD-KTVR 256 (498)
Q Consensus 189 ~V~~v~~sp~~~~~lasg~~dg~i~iwd~~~~~~----------~~~~~~~-h~~~V~~l~~s~~~~~l~s~s~d-g~v~ 256 (498)
.|..|+. .....+.-..||.|..|-....++ ....+.. ....|..++...+ +.+....+ +.|.
T Consensus 17 ~v~~ia~---G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~ 91 (406)
T 4d9s_A 17 KVLIISA---GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVY 91 (406)
T ss_dssp CEEEEEE---CSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEE
T ss_pred ceEEEec---CCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEE
Confidence 4555554 445666667788888887554221 1111211 2235666665433 44444455 4898
Q ss_pred EEECCCC---------cEEEE--EecC--CCeEEEEEEcCCCcEEEEEeCCCcEEEEEcCCC-c---------EE-EEee
Q 010871 257 VWELTKG---------DCIRV--IYGV--SSQLCIRFHPVNNNFLSVGNANKEITVFNFSTG-R---------II-KKLV 312 (498)
Q Consensus 257 iwd~~~~---------~~~~~--~~~~--~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~---------~~-~~~~ 312 (498)
.|-.... ..... +... ..+..++. +..+.++-..+|.|+.|-.... + .. ..+.
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 8864321 11111 1111 24555554 4455555678999999975421 1 11 1111
Q ss_pred --cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccc-----ccccccccCCCccceeeEEEeEeeEcCCCcEEEE
Q 010871 313 --VDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALS-----RSHRHRTTGKRKCPVTTVQYRSFSLLAGGPVLLT 385 (498)
Q Consensus 313 --~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~l~t 385 (498)
....|..++.. ..+.++-..+|.|+.|-.......-. ...+..........|..+. ......+.
T Consensus 169 ~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va-------~G~~ht~~ 239 (406)
T 4d9s_A 169 AFEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA-------CGWRHTIS 239 (406)
T ss_dssp GGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEE-------ECSSEEEE
T ss_pred ccCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEE-------ECCCcEEE
Confidence 12356666653 34566667899999996543211100 0000000011112233332 23445556
Q ss_pred EEcCCcEEEEEcccccc-------ceeeEeEeeccC-CceeeeEEEEeeeeeccCCCEEEEEeCCCcEEEEECCCCCc--
Q 010871 386 CTQDGNLSFFSVALEIQ-------GYLTFRCSLKLA-PRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKH-- 455 (498)
Q Consensus 386 ~s~dg~i~iwd~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~gs~dg~I~iwd~~~~~~-- 455 (498)
-..+|.|..|-.....+ ............ ..+..+ +. ...+.++-..||.|+.|-.....+
T Consensus 240 l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i----~~-----G~~hs~alt~~G~v~~wG~n~~GqLG 310 (406)
T 4d9s_A 240 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQI----SG-----GWRHTMALTSDGKLYGWGWNKFGQVG 310 (406)
T ss_dssp EETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEE----EE-----CSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred EcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEE----Ee-----cCCEEEEEcCCCeEEEeeCCCCCCCC
Confidence 67788888886442111 001111111111 112222 11 345556667888899997543110
Q ss_pred --------cceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 456 --------SCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 456 --------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
.+..........|..|+... ...+.-..||.|+.|=..
T Consensus 311 ~g~~~~~~~p~~v~~~~~~~v~~va~G~--~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 311 VGNNLDQCSPVQVRFPDDQKVVQVSCGW--RHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp SSSSSCEEEEEEECCGGGCCEEEEEECS--SEEEEEETTSCEEEEECC
T ss_pred CCCCCCCccCEEEeccCCCcEEEEEeCC--CeEEEEeCCCCEEEecCC
Confidence 01111011223566666542 344445678999998543
No 383
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=28.50 E-value=3.6e+02 Score=24.98 Aligned_cols=105 Identities=7% Similarity=0.159 Sum_probs=58.2
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCC-c--------E--EEEEecC--CCeEEEEEEcCCCcEEEEEeCCCcEEE
Q 010871 233 DVTDFDFSSNNQYIASSSMDKTVRVWELTKG-D--------C--IRVIYGV--SSQLCIRFHPVNNNFLSVGNANKEITV 299 (498)
Q Consensus 233 ~V~~l~~s~~~~~l~s~s~dg~v~iwd~~~~-~--------~--~~~~~~~--~~v~~i~~~~~~~~~l~~g~~dg~i~i 299 (498)
.|..|+.. ..+.+....||.|..|-.... + . ...+... ..+..++. +..+.++-..+|.|+.
T Consensus 122 ~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~---G~~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 122 RIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA---GAEHTAAVTEDGDLYG 196 (406)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTSCEEE
T ss_pred CEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEec---CCCeEEEEeCCCCEEE
Confidence 56666654 346666678999999975421 1 1 1111111 24555554 4455556668999999
Q ss_pred EEcCCC----------cEE-EEee--cCCCeEEEEEcCCCCEEEEEcCCCeEEEEEcc
Q 010871 300 FNFSTG----------RII-KKLV--VDSEVTSMDHDHTGQLLFCGDAQGCIYSISME 344 (498)
Q Consensus 300 wd~~~~----------~~~-~~~~--~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~ 344 (498)
|-.... ... ..+. ....|..++.. ....++-..+|.|+.|-..
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~~wG~n 252 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGALYTYGWS 252 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCEEEEECC
T ss_pred eeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCEEEeeCC
Confidence 964321 111 1111 12456666553 3455556788999998654
No 384
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=27.33 E-value=1.7e+02 Score=29.07 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=33.4
Q ss_pred eeccCCCEEEEEeCC------------CcEEEEECCCCCccceeeecCC-CCCeEEEEEcCCCCEEEEE
Q 010871 428 LSLEKGEYIVAGSED------------SNVYFYDLAKPKHSCVNKLQGH-RFPVVAVAWNHGENLLASS 483 (498)
Q Consensus 428 ~~~~~~~~l~~gs~d------------g~I~iwd~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~ 483 (498)
++++.|+++++-..+ ..+.+.+..+++. ...+.++ ...++.++|+||++.|+..
T Consensus 482 ~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~--~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 482 GFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI--RRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE--EEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred EECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeE--EEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 334588876665432 2355555555443 3333343 4679999999999987765
No 385
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=26.90 E-value=3.1e+02 Score=23.65 Aligned_cols=157 Identities=10% Similarity=0.039 Sum_probs=76.2
Q ss_pred EEEEEeCCCcEEEEEcCCCcE-EEEeecCCCeEEEEEcCCCCEEEEEcCCCeEEEEEccCCccccccccc--ccccCCCc
Q 010871 287 FLSVGNANKEITVFNFSTGRI-IKKLVVDSEVTSMDHDHTGQLLFCGDAQGCIYSISMESHSGALSRSHR--HRTTGKRK 363 (498)
Q Consensus 287 ~l~~g~~dg~i~iwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~ 363 (498)
.+++.+.+|.|+--....... ...+.....+..+......+.|+..+..|.++-+....-......... ........
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~ 83 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPG 83 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCC
Confidence 455566777776555432110 011233445555554445556777788898877655321100000000 00001123
Q ss_pred cceeeEEEeEeeEcCCCcEEEEEEcCCcEEEEEccccccceeeEeEeeccCCceeeeEEEEeeeeeccCCCEEEEEeCCC
Q 010871 364 CPVTTVQYRSFSLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDS 443 (498)
Q Consensus 364 ~~i~~~~~~~~~~s~~~~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~dg 443 (498)
..|..+... .++.+|+.++..|.++...+..-............+...-..+.+... ..++..|+..+.+|
T Consensus 84 e~Iv~~~~~-----~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~----~~~~~~i~l~T~~G 154 (256)
T 1zvt_A 84 ATVDHMLME-----SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI----EDASDMLLAITQAG 154 (256)
T ss_dssp CCEEEEECC-----CTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEEC----CCTTCEEEEEETTS
T ss_pred CEEEEEEEe-----CCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEe----cCCCCEEEEEcCCC
Confidence 345444221 356678899999999999875321100000111111111111111111 01456788889999
Q ss_pred cEEEEECCC
Q 010871 444 NVYFYDLAK 452 (498)
Q Consensus 444 ~I~iwd~~~ 452 (498)
.+..|....
T Consensus 155 ~~lrf~~~e 163 (256)
T 1zvt_A 155 RMLMFPVSD 163 (256)
T ss_dssp EEEEEEGGG
T ss_pred eEEEEEHHH
Confidence 999898753
No 386
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=25.20 E-value=2.1e+02 Score=27.69 Aligned_cols=58 Identities=9% Similarity=0.104 Sum_probs=38.4
Q ss_pred CEEEEEeCCCcEEEEECCCCC------ccceeeecC--CCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 010871 434 EYIVAGSEDSNVYFYDLAKPK------HSCVNKLQG--HRFPVVAVAWNHGENLLASSDLYGIVIV 491 (498)
Q Consensus 434 ~~l~~gs~dg~I~iwd~~~~~------~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~~~Dg~i~i 491 (498)
..++.|..+|.|.-.-+.... ...+.++.- ...+|..|.++++..+|+.++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 357789999987654443211 112333332 3578999999999999999998877765
No 387
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=25.12 E-value=4.5e+02 Score=24.98 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=16.2
Q ss_pred EEEcCCCCEEEEEeCCCeEEEeecC
Q 010871 471 VAWNHGENLLASSDLYGIVIVWKRA 495 (498)
Q Consensus 471 l~~sp~~~~l~s~~~Dg~i~iW~~~ 495 (498)
+.+...++.+++... +.+.+|++.
T Consensus 213 ~~~~~g~r~v~ilT~-~~lq~W~l~ 236 (450)
T 1xks_A 213 VLWDRERSSFYSLTS-SNISKWELD 236 (450)
T ss_dssp EEEETTTTEEEEEES-SEEEEEEEC
T ss_pred eccCCCcEEEEEEcC-CceEEEEec
Confidence 444455666766665 559999983
No 388
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=23.62 E-value=2.4e+02 Score=28.03 Aligned_cols=58 Identities=7% Similarity=0.036 Sum_probs=38.8
Q ss_pred CEEEEEeCCCcEEEEECCCCC----ccceeeec--CCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 010871 434 EYIVAGSEDSNVYFYDLAKPK----HSCVNKLQ--GHRFPVVAVAWNHGENLLASSDLYGIVIV 491 (498)
Q Consensus 434 ~~l~~gs~dg~I~iwd~~~~~----~~~~~~~~--~h~~~V~~l~~sp~~~~l~s~~~Dg~i~i 491 (498)
..++.|+.+|.|.-.-+.... ...+..+. ....+|..|.++++...|+.++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 467889999987654433211 11122232 24568999999999999999988877765
No 389
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=23.58 E-value=3.1e+02 Score=27.13 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=38.8
Q ss_pred CeEEEEEEcCCCcEEEEEeC------------CCcEEEEEcCCCcEEEEee--cCCCeEEEEEcCCCCEEEEE
Q 010871 274 SQLCIRFHPVNNNFLSVGNA------------NKEITVFNFSTGRIIKKLV--VDSEVTSMDHDHTGQLLFCG 332 (498)
Q Consensus 274 ~v~~i~~~~~~~~~l~~g~~------------dg~i~iwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~ 332 (498)
..-.+.|.+++ .+.++... ...|..++..+++....+. ....++.++|+|+++.|+++
T Consensus 477 sPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 34578898865 45542211 1256777777787665554 34679999999999987765
Done!