Query 010873
Match_columns 498
No_of_seqs 172 out of 326
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 05:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 2E-38 4.3E-43 262.9 -1.0 78 179-256 1-78 (79)
2 PF14901 Jiv90: Cleavage induc 37.6 14 0.00031 32.8 0.7 18 217-234 26-43 (94)
3 PRK00241 nudC NADH pyrophospha 37.5 14 0.0003 36.9 0.7 37 192-229 92-128 (256)
4 PF09297 zf-NADH-PPase: NADH p 32.0 16 0.00035 25.6 0.1 31 197-228 1-31 (32)
5 COG2816 NPY1 NTP pyrophosphohy 24.8 26 0.00057 36.2 0.2 36 192-228 104-139 (279)
6 KOG4846 Nuclear receptor [Sign 22.9 35 0.00075 37.7 0.7 49 174-225 129-192 (538)
7 PLN03105 TCP24 transcription f 22.6 1.2E+02 0.0026 31.6 4.3 76 373-473 207-283 (324)
8 TIGR03831 YgiT_finger YgiT-typ 21.6 45 0.00096 23.9 0.8 20 207-226 21-40 (46)
9 PF14776 UNC-79: Cation-channe 18.9 74 0.0016 35.8 2.1 28 199-226 262-298 (525)
10 PRK06424 transcription factor; 17.8 69 0.0015 30.0 1.4 21 209-229 14-34 (144)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=2e-38 Score=262.86 Aligned_cols=78 Identities=64% Similarity=1.145 Sum_probs=63.2
Q ss_pred ccccCCCcccccCCcchhccccccccccCCCeEEECCeehhhhhhhcccccccccccccchHHHHHhhhhhhhcCCCC
Q 010873 179 LCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQF 256 (498)
Q Consensus 179 ~CQVdGC~~dLs~~K~YhrRhRVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rL~~HN~RRRK~q~ 256 (498)
+||||||++||+.+|.||+||||||.|+|||+|+++|.++||||||+|||+|+||||+|||||++|++||+||||+++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=37.58 E-value=14 Score=32.78 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=14.5
Q ss_pred ehhhhhhhcccccccccc
Q 010873 217 EQRFCQQCSRFHLLAEFD 234 (498)
Q Consensus 217 ~qRFCQQCsRFH~L~EFD 234 (498)
.-|+||+|..+|+..+=|
T Consensus 26 ~AR~C~~C~~~H~Ak~gD 43 (94)
T PF14901_consen 26 AARYCQDCKIRHPAKEGD 43 (94)
T ss_pred hhHhHHHhhhhcccccCC
Confidence 469999999999876544
No 3
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=37.55 E-value=14 Score=36.91 Aligned_cols=37 Identities=11% Similarity=0.319 Sum_probs=28.8
Q ss_pred CcchhccccccccccCCCeEEECCeehhhhhhhccccc
Q 010873 192 SKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHL 229 (498)
Q Consensus 192 ~K~YhrRhRVCe~HsKAp~V~v~G~~qRFCQQCsRFH~ 229 (498)
+-.+|++||-|..+-....+ ..+...|.|..|++.|-
T Consensus 92 l~~w~~~~~fC~~CG~~~~~-~~~~~~~~C~~c~~~~y 128 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPMHP-SKTEWAMLCPHCRERYY 128 (256)
T ss_pred HHHHhhcCccccccCCCCee-cCCceeEECCCCCCEEC
Confidence 34799999999998876554 45566789999997664
No 4
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=32.03 E-value=16 Score=25.58 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=17.7
Q ss_pred ccccccccccCCCeEEECCeehhhhhhhcccc
Q 010873 197 KRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFH 228 (498)
Q Consensus 197 rRhRVCe~HsKAp~V~v~G~~qRFCQQCsRFH 228 (498)
++||-|... -+|++.+.+...|-|+.|+..|
T Consensus 1 ~~~rfC~~C-G~~t~~~~~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 1 RNHRFCGRC-GAPTKPAPGGWARRCPSCGHEH 31 (32)
T ss_dssp HTTSB-TTT---BEEE-SSSS-EEESSSS-EE
T ss_pred CCCcccCcC-CccccCCCCcCEeECCCCcCEe
Confidence 356677654 4677777777888888887644
No 5
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=24.76 E-value=26 Score=36.23 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=29.6
Q ss_pred CcchhccccccccccCCCeEEECCeehhhhhhhcccc
Q 010873 192 SKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFH 228 (498)
Q Consensus 192 ~K~YhrRhRVCe~HsKAp~V~v~G~~qRFCQQCsRFH 228 (498)
+-.+|++||.|..+ -+++...+|...|-|++|+.-|
T Consensus 104 l~~w~~~~RFCg~C-G~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 104 LLEWYRSHRFCGRC-GTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred HHHHHhhCcCCCCC-CCcCccccCceeeeCCCCCCcc
Confidence 44689999999864 6778888999999999998544
No 6
>KOG4846 consensus Nuclear receptor [Signal transduction mechanisms]
Probab=22.85 E-value=35 Score=37.72 Aligned_cols=49 Identities=22% Similarity=0.472 Sum_probs=33.8
Q ss_pred CCCCCccccCCCcc--------cccCCcchhcc-------ccccccccCCCeEEECCeehhhhhhhc
Q 010873 174 CSQTPLCQVYGCNK--------DLSSSKDYHKR-------HKVCDVHSKTPKVIVNGNEQRFCQQCS 225 (498)
Q Consensus 174 ~~~~~~CQVdGC~~--------dLs~~K~YhrR-------hRVCe~HsKAp~V~v~G~~qRFCQQCs 225 (498)
+...-.|+|.|=.+ .+.++|+|||| ||.| .|+..-.|--...--||+|.
T Consensus 129 ~~~~~lCkVCgDkASGfHYGV~aCEGCKGFFRRSIQqkI~YrrC---lk~e~C~I~R~nRNRCQ~CR 192 (538)
T KOG4846|consen 129 GKAISLCKVCGDKASGFHYGVTACEGCKGFFRRSIQQKIDYRRC---LKQEVCEIKRENRNRCQYCR 192 (538)
T ss_pred cceeEeehhhccccccceeceeecccchHHHHHHHHHhhhHHHH---hhhhceehhhhccchhhhhh
Confidence 55678899955322 35678999998 4555 56666666656666799995
No 7
>PLN03105 TCP24 transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional
Probab=22.59 E-value=1.2e+02 Score=31.65 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=46.0
Q ss_pred CcCCCCCccCcccccccccccCCcccccccccCCCCcccccCcccC-CCCccccccCcceeecCCCccccceeccccccc
Q 010873 373 HLSGIPMARPLISQVSHTHLNLGQNFVKTSGTTPLGKYETKGFYTS-GMNSMDGAQMRSLMVPDAGHAFELKVETDEVSQ 451 (498)
Q Consensus 373 ~~~gipma~plv~~~~~~h~~~~q~s~k~lG~ss~~~~~~~~~~~~-~~ns~e~~~m~p~~~~~~~~~~~~~~~~dg~~Q 451 (498)
.+++-||.+|. ..|.++-+||++..+ +-|+-|++ |+-. ++.-.++..+.+.|+|
T Consensus 207 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~rgtlq-------------sns~sl~~~~~~~~~q 261 (324)
T PLN03105 207 SSSQEPMNHPF-----------SFVPDYNFGISSSSS-AINGGYSSRGTLQ-------------SNSQSLFLNNNNNITQ 261 (324)
T ss_pred CcccccccCCc-----------ccccccccccccccc-cccCccccccccc-------------cCChhhcccCCcchhh
Confidence 45677888876 345677789988554 44444443 3322 1222344456778888
Q ss_pred cccccccccCCCCCCCCeeehh
Q 010873 452 ESDFFKDKNCYSPEQGFTVDLI 473 (498)
Q Consensus 452 ~sd~~~~k~~~s~e~~~tvdll 473 (498)
-+..-..-..-++-++..|-.+
T Consensus 262 r~~~~~~~~~~sp~d~~~~~ff 283 (324)
T PLN03105 262 RSSISSSSSSSSPMDSQSISFF 283 (324)
T ss_pred hcccccccccCCCCCcCccccc
Confidence 8776666666667777665544
No 8
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=21.59 E-value=45 Score=23.89 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=17.3
Q ss_pred CCCeEEECCeehhhhhhhcc
Q 010873 207 KTPKVIVNGNEQRFCQQCSR 226 (498)
Q Consensus 207 KAp~V~v~G~~qRFCQQCsR 226 (498)
+.-.+++.+.+.++|.+|+.
T Consensus 21 ~~~~~~i~~vp~~~C~~CGE 40 (46)
T TIGR03831 21 GGELIVIENVPALVCPQCGE 40 (46)
T ss_pred CCEEEEEeCCCccccccCCC
Confidence 55678899999999999984
No 9
>PF14776 UNC-79: Cation-channel complex subunit UNC-79
Probab=18.86 E-value=74 Score=35.76 Aligned_cols=28 Identities=32% Similarity=0.622 Sum_probs=19.8
Q ss_pred ccccccccCCCeEEE---------CCeehhhhhhhcc
Q 010873 199 HKVCDVHSKTPKVIV---------NGNEQRFCQQCSR 226 (498)
Q Consensus 199 hRVCe~HsKAp~V~v---------~G~~qRFCQQCsR 226 (498)
+|-|.-+.|..+|+- ++++.|+||||..
T Consensus 262 nK~C~S~~k~AvvtCFS~eCt~~~gn~PiRlC~~Ch~ 298 (525)
T PF14776_consen 262 NKNCRSSDKSAVVTCFSTECTSYNGNRPIRLCQQCHS 298 (525)
T ss_pred CCCCcCCCCCeEEEEechhhccccCCCcchhHHHHhh
Confidence 355566666666653 7788999999963
No 10
>PRK06424 transcription factor; Provisional
Probab=17.83 E-value=69 Score=29.98 Aligned_cols=21 Identities=29% Similarity=0.790 Sum_probs=18.5
Q ss_pred CeEEECCeehhhhhhhccccc
Q 010873 209 PKVIVNGNEQRFCQQCSRFHL 229 (498)
Q Consensus 209 p~V~v~G~~qRFCQQCsRFH~ 229 (498)
-.|+|+|.+.+-|..|.+|=.
T Consensus 14 ~~v~ieg~~l~vC~~Ca~~G~ 34 (144)
T PRK06424 14 TKVMIDGAILNVCDDCAKFGT 34 (144)
T ss_pred eEEEEcCeeeehhHHHHHcCC
Confidence 478999999999999999943
Done!