Query 010873
Match_columns 498
No_of_seqs 172 out of 326
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 16:03:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 1.1E-41 3.9E-46 288.8 0.1 88 173-260 4-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 2.1E-40 7.1E-45 278.3 -1.0 83 176-258 2-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 3.3E-31 1.1E-35 209.1 1.8 59 176-234 2-60 (60)
4 2d8r_A THAP domain-containing 30.4 22 0.00074 29.2 1.8 15 175-189 7-21 (99)
5 1vk6_A NADH pyrophosphatase; 1 25.0 17 0.00058 34.8 0.3 37 192-229 100-136 (269)
6 2lau_A THAP domain-containing 24.7 36 0.0012 26.5 2.1 11 177-187 4-14 (81)
7 4a6q_A Histone deacetylase com 13.2 37 0.0013 30.9 -0.3 30 195-235 19-48 (143)
8 1gh9_A 8.3 kDa protein (gene M 11.8 75 0.0026 25.6 1.1 27 201-230 6-32 (71)
9 2jm3_A Hypothetical protein; z 11.7 1.4E+02 0.0049 24.5 2.8 10 178-187 5-14 (91)
10 2yvr_A Transcription intermedi 10.6 72 0.0025 22.5 0.6 15 197-211 4-19 (50)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.1e-41 Score=288.83 Aligned_cols=88 Identities=59% Similarity=1.006 Sum_probs=80.5
Q ss_pred CCCCCCccccCCCcccccCCcchhccccccccccCCCeEEECCeehhhhhhhcccccccccccccchHHHHHhhhhhhhc
Q 010873 173 SCSQTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRR 252 (498)
Q Consensus 173 ~~~~~~~CQVdGC~~dLs~~K~YhrRhRVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rL~~HN~RRR 252 (498)
.+++.++|||+||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+|||
T Consensus 4 ~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRR 83 (94)
T 1ul4_A 4 GSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRR 83 (94)
T ss_dssp ----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCC
T ss_pred CCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 010873 253 KPQFNIHS 260 (498)
Q Consensus 253 K~q~~~~~ 260 (498)
|+++++.+
T Consensus 84 k~~~~~~~ 91 (94)
T 1ul4_A 84 KSSGESGP 91 (94)
T ss_dssp SCCCC---
T ss_pred cCCCCcCC
Confidence 99999754
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=2.1e-40 Score=278.33 Aligned_cols=83 Identities=46% Similarity=0.943 Sum_probs=78.9
Q ss_pred CCCccccCCCcccccCCcchhccccccccccCCCeEEECCeehhhhhhhcccccccccccccchHHHHHhhhhhhhcCCC
Q 010873 176 QTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQ 255 (498)
Q Consensus 176 ~~~~CQVdGC~~dLs~~K~YhrRhRVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rL~~HN~RRRK~q 255 (498)
..++|||+||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCC
Q 010873 256 FNI 258 (498)
Q Consensus 256 ~~~ 258 (498)
.+.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred ccC
Confidence 664
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.96 E-value=3.3e-31 Score=209.12 Aligned_cols=59 Identities=61% Similarity=1.111 Sum_probs=57.2
Q ss_pred CCCccccCCCcccccCCcchhccccccccccCCCeEEECCeehhhhhhhcccccccccc
Q 010873 176 QTPLCQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFD 234 (498)
Q Consensus 176 ~~~~CQVdGC~~dLs~~K~YhrRhRVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFD 234 (498)
+.++|||+||++||+.+|+|||||||||.|+|||+|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=30.35 E-value=22 Score=29.22 Aligned_cols=15 Identities=20% Similarity=0.527 Sum_probs=10.8
Q ss_pred CCCCccccCCCcccc
Q 010873 175 SQTPLCQVYGCNKDL 189 (498)
Q Consensus 175 ~~~~~CQVdGC~~dL 189 (498)
.....|-|.||...-
T Consensus 7 ~M~~~C~v~gC~n~~ 21 (99)
T 2d8r_A 7 GMPTNCAAAGCATTY 21 (99)
T ss_dssp CCCCCCCSSSCCCSC
T ss_pred CCCCeeEeCCCCCCC
Confidence 345679999998653
No 5
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=25.00 E-value=17 Score=34.75 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=28.8
Q ss_pred CcchhccccccccccCCCeEEECCeehhhhhhhccccc
Q 010873 192 SKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHL 229 (498)
Q Consensus 192 ~K~YhrRhRVCe~HsKAp~V~v~G~~qRFCQQCsRFH~ 229 (498)
+..++++++-|..+- ++....++...+.|..|+..|-
T Consensus 100 l~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEEC
T ss_pred HHhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEec
Confidence 346889999998865 4566678888999999987553
No 6
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=24.67 E-value=36 Score=26.54 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=8.0
Q ss_pred CCccccCCCcc
Q 010873 177 TPLCQVYGCNK 187 (498)
Q Consensus 177 ~~~CQVdGC~~ 187 (498)
...|-|.||..
T Consensus 4 G~~C~v~gC~n 14 (81)
T 2lau_A 4 GFTCCVPGCYN 14 (81)
T ss_dssp CCSCCCSSSSS
T ss_pred CCEEEeCCCcC
Confidence 45688888864
No 7
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=13.19 E-value=37 Score=30.91 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=23.9
Q ss_pred hhccccccccccCCCeEEECCeehhhhhhhccccccccccc
Q 010873 195 YHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDD 235 (498)
Q Consensus 195 YhrRhRVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFDg 235 (498)
---|.++|+.+.+ -||.+=++||.++||..
T Consensus 19 ~idRektcPfLLR-----------vF~~~ng~hh~~~eF~~ 48 (143)
T 4a6q_A 19 PIDREKTCPLLLR-----------VFTTNNGRHHRMDEFSR 48 (143)
T ss_dssp CCCGGGSCCEEEE-----------EEEESSSSCCCGGGGCT
T ss_pred CccccCCCCeEEE-----------EEecCCCCCCCHHHccC
Confidence 3468899999765 48877689999999973
No 8
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=11.76 E-value=75 Score=25.59 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=20.7
Q ss_pred ccccccCCCeEEECCeehhhhhhhcccccc
Q 010873 201 VCDVHSKTPKVIVNGNEQRFCQQCSRFHLL 230 (498)
Q Consensus 201 VCe~HsKAp~V~v~G~~qRFCQQCsRFH~L 230 (498)
.|+ ..+..++-+|....-|+ ||+-|.+
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeee
Confidence 477 55567888899999998 9966554
No 9
>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein; NMR {Caenorhabditis elegans}
Probab=11.70 E-value=1.4e+02 Score=24.47 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=7.0
Q ss_pred CccccCCCcc
Q 010873 178 PLCQVYGCNK 187 (498)
Q Consensus 178 ~~CQVdGC~~ 187 (498)
..|-|.||..
T Consensus 5 ~~C~V~gC~n 14 (91)
T 2jm3_A 5 TTCGFPNCKF 14 (91)
T ss_dssp CCCCCTTCCS
T ss_pred CeEEeCCCcC
Confidence 4788888853
No 10
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=10.56 E-value=72 Score=22.50 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=10.3
Q ss_pred ccccccccc-cCCCeE
Q 010873 197 KRHKVCDVH-SKTPKV 211 (498)
Q Consensus 197 rRhRVCe~H-sKAp~V 211 (498)
+|...|+.| -....+
T Consensus 4 ~~~~~C~~H~~e~l~l 19 (50)
T 2yvr_A 4 ERTVYCNVHKHEPLVL 19 (50)
T ss_dssp CCSCBCSSSTTCBCCE
T ss_pred cCCCcCcCCCCCCEEE
Confidence 567789999 555444
Done!