Query 010874
Match_columns 498
No_of_seqs 375 out of 2351
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:32:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 1.2E-74 2.7E-79 579.5 33.5 355 92-493 3-363 (393)
2 KOG1322 GDP-mannose pyrophosph 100.0 1.4E-71 3.1E-76 538.3 30.8 346 87-497 3-350 (371)
3 PLN02241 glucose-1-phosphate a 100.0 2.6E-64 5.7E-69 533.2 43.5 404 92-497 1-406 (436)
4 PRK02862 glgC glucose-1-phosph 100.0 9.1E-61 2E-65 505.0 42.6 398 92-497 1-399 (429)
5 PRK00844 glgC glucose-1-phosph 100.0 5.2E-57 1.1E-61 473.8 40.7 361 91-492 2-382 (407)
6 PRK05293 glgC glucose-1-phosph 100.0 1.9E-56 4.2E-61 465.8 40.6 356 92-495 1-362 (380)
7 PRK00725 glgC glucose-1-phosph 100.0 7.1E-56 1.5E-60 467.2 40.9 363 90-492 11-394 (425)
8 TIGR02092 glgD glucose-1-phosp 100.0 1.7E-53 3.8E-58 441.9 36.4 352 93-495 1-358 (369)
9 TIGR02091 glgC glucose-1-phosp 100.0 2.4E-52 5.1E-57 432.1 39.0 356 97-492 1-361 (361)
10 COG1208 GCD1 Nucleoside-diphos 100.0 9.3E-51 2E-55 418.0 35.7 319 94-486 1-324 (358)
11 TIGR01208 rmlA_long glucose-1- 100.0 3.7E-47 8E-52 392.3 37.5 328 96-493 1-340 (353)
12 PRK14355 glmU bifunctional N-a 100.0 1.7E-42 3.7E-47 369.6 33.8 355 92-495 1-392 (459)
13 COG1207 GlmU N-acetylglucosami 100.0 9.7E-43 2.1E-47 349.2 29.5 355 94-496 2-393 (460)
14 KOG1460 GDP-mannose pyrophosph 100.0 4.4E-43 9.5E-48 334.7 20.2 331 94-492 2-357 (407)
15 KOG1461 Translation initiation 100.0 8.4E-42 1.8E-46 354.5 30.9 359 92-490 22-399 (673)
16 PRK14352 glmU bifunctional N-a 100.0 3E-41 6.6E-46 362.0 34.1 357 92-495 2-394 (482)
17 PRK14358 glmU bifunctional N-a 100.0 3.1E-41 6.8E-46 361.2 30.3 355 93-495 6-394 (481)
18 PRK09451 glmU bifunctional N-a 100.0 2.2E-40 4.8E-45 353.1 29.4 350 92-495 3-389 (456)
19 PRK14359 glmU bifunctional N-a 100.0 8.3E-40 1.8E-44 346.0 32.8 342 94-495 2-362 (430)
20 TIGR01173 glmU UDP-N-acetylglu 100.0 6.4E-40 1.4E-44 348.7 31.4 348 95-495 1-385 (451)
21 COG1209 RfbA dTDP-glucose pyro 100.0 2.2E-40 4.7E-45 316.3 22.9 234 95-373 1-237 (286)
22 PRK14356 glmU bifunctional N-a 100.0 8.4E-39 1.8E-43 340.9 34.2 352 94-495 5-393 (456)
23 PRK14353 glmU bifunctional N-a 100.0 1.9E-38 4.1E-43 337.2 33.9 311 92-449 3-348 (446)
24 TIGR01105 galF UTP-glucose-1-p 100.0 5.5E-39 1.2E-43 322.5 27.6 243 92-372 1-277 (297)
25 PF00483 NTP_transferase: Nucl 100.0 4.9E-39 1.1E-43 314.9 25.9 241 96-373 1-247 (248)
26 PRK14354 glmU bifunctional N-a 100.0 2.8E-38 6.1E-43 337.0 31.1 352 93-495 1-388 (458)
27 KOG1462 Translation initiation 100.0 3.9E-39 8.4E-44 318.2 21.9 359 92-492 7-419 (433)
28 PRK10122 GalU regulator GalF; 100.0 2.3E-38 5E-43 318.5 27.7 245 92-374 1-280 (297)
29 PRK14357 glmU bifunctional N-a 100.0 5.8E-38 1.3E-42 333.7 29.6 340 95-492 1-375 (448)
30 cd06428 M1P_guanylylT_A_like_N 100.0 6.1E-38 1.3E-42 309.7 26.0 235 97-371 1-257 (257)
31 cd06425 M1P_guanylylT_B_like_N 100.0 1.6E-37 3.5E-42 302.1 27.4 232 95-372 1-233 (233)
32 PRK14360 glmU bifunctional N-a 100.0 8.7E-37 1.9E-41 324.8 31.5 348 95-494 2-384 (450)
33 PRK15480 glucose-1-phosphate t 100.0 1.3E-36 2.9E-41 304.5 27.4 235 92-372 1-241 (292)
34 cd02538 G1P_TT_short G1P_TT_sh 100.0 2.8E-36 6.1E-41 294.7 26.8 231 95-371 1-237 (240)
35 TIGR01207 rmlA glucose-1-phosp 100.0 4.8E-36 1E-40 299.9 25.8 231 96-372 1-237 (286)
36 cd02541 UGPase_prokaryotic Pro 100.0 7.1E-36 1.5E-40 296.4 25.8 244 95-372 1-265 (267)
37 TIGR02623 G1P_cyt_trans glucos 100.0 1.6E-35 3.4E-40 292.1 26.4 233 96-375 1-248 (254)
38 TIGR01099 galU UTP-glucose-1-p 100.0 1.1E-35 2.5E-40 293.7 24.3 238 95-367 1-260 (260)
39 PRK13389 UTP--glucose-1-phosph 100.0 4.3E-35 9.4E-40 295.2 27.3 243 93-372 7-280 (302)
40 cd06422 NTP_transferase_like_1 100.0 4.6E-35 9.9E-40 282.4 22.8 219 96-367 1-221 (221)
41 cd02524 G1P_cytidylyltransfera 100.0 3.6E-34 7.8E-39 282.2 26.6 241 97-374 1-248 (253)
42 cd04189 G1P_TT_long G1P_TT_lon 100.0 4.7E-34 1E-38 277.8 26.9 232 95-373 1-235 (236)
43 cd06915 NTP_transferase_WcbM_l 100.0 4.8E-33 1E-37 267.4 24.0 223 97-368 1-223 (223)
44 cd04181 NTP_transferase NTP_tr 100.0 8.2E-33 1.8E-37 264.8 24.0 217 97-359 1-217 (217)
45 cd06426 NTP_transferase_like_2 100.0 3.6E-32 7.9E-37 261.6 24.4 219 97-368 1-220 (220)
46 cd04197 eIF-2B_epsilon_N The N 100.0 9.5E-32 2.1E-36 258.9 18.4 206 95-318 1-217 (217)
47 COG1210 GalU UDP-glucose pyrop 100.0 4.3E-31 9.2E-36 252.7 20.0 249 92-376 2-274 (291)
48 cd02508 ADP_Glucose_PP ADP-glu 100.0 3.4E-30 7.5E-35 244.9 21.7 198 97-358 1-200 (200)
49 cd02523 PC_cytidylyltransferas 100.0 3.7E-30 8.1E-35 249.5 21.4 222 97-368 1-229 (229)
50 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 1.4E-29 2.9E-34 245.8 22.5 222 97-364 1-230 (231)
51 cd02509 GDP-M1P_Guanylyltransf 100.0 2.1E-27 4.5E-32 236.7 19.2 233 95-363 1-273 (274)
52 cd02507 eIF-2B_gamma_N_like Th 100.0 1.2E-27 2.6E-32 230.3 16.5 204 95-318 1-216 (216)
53 cd02540 GT2_GlmU_N_bac N-termi 99.9 3.7E-26 8.1E-31 221.0 23.0 221 97-364 1-229 (229)
54 cd04198 eIF-2B_gamma_N The N-t 99.9 2.6E-26 5.7E-31 220.7 15.3 201 95-318 1-214 (214)
55 TIGR01479 GMP_PMI mannose-1-ph 99.9 1.6E-24 3.5E-29 230.8 21.3 240 95-368 1-281 (468)
56 PRK05450 3-deoxy-manno-octulos 99.9 4.7E-23 1E-27 201.8 23.4 234 94-371 2-244 (245)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 4.9E-23 1.1E-27 200.9 22.5 226 95-369 2-238 (239)
58 COG1213 Predicted sugar nucleo 99.9 1.3E-22 2.8E-27 191.3 18.3 225 92-374 1-231 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 2.4E-21 5.1E-26 188.9 21.8 225 94-370 2-237 (238)
60 PRK15460 cpsB mannose-1-phosph 99.8 9.4E-20 2E-24 193.1 19.5 242 94-368 5-290 (478)
61 COG4750 LicC CTP:phosphocholin 99.8 2.5E-19 5.4E-24 162.4 16.2 220 95-373 1-227 (231)
62 PLN02917 CMP-KDO synthetase 99.8 1.7E-17 3.7E-22 166.7 23.2 237 92-374 45-290 (293)
63 COG0836 {ManC} Mannose-1-phosp 99.8 7.7E-18 1.7E-22 165.3 19.7 240 95-368 2-282 (333)
64 PRK00155 ispD 2-C-methyl-D-ery 99.6 1.7E-14 3.7E-19 139.7 19.4 219 92-373 1-224 (227)
65 TIGR00453 ispD 2-C-methyl-D-er 99.6 1.6E-14 3.4E-19 138.9 18.4 210 97-370 2-216 (217)
66 TIGR00466 kdsB 3-deoxy-D-manno 99.6 1E-13 2.2E-18 135.5 20.9 228 97-364 2-237 (238)
67 cd02516 CDP-ME_synthetase CDP- 99.6 5.5E-14 1.2E-18 135.0 17.3 212 96-366 2-217 (218)
68 cd02513 CMP-NeuAc_Synthase CMP 99.6 1.7E-13 3.6E-18 131.9 19.3 216 95-370 2-222 (223)
69 PRK09382 ispDF bifunctional 2- 99.6 1.7E-13 3.7E-18 142.0 20.0 208 92-373 3-214 (378)
70 TIGR00454 conserved hypothetic 99.6 3.7E-14 8E-19 133.0 12.9 125 95-250 1-127 (183)
71 PRK13385 2-C-methyl-D-erythrit 99.5 4.7E-13 1E-17 130.0 18.6 218 94-372 2-224 (230)
72 TIGR03310 matur_ygfJ molybdenu 99.5 3E-13 6.6E-18 126.6 16.3 119 97-244 2-122 (188)
73 PF12804 NTP_transf_3: MobA-li 99.5 8.7E-14 1.9E-18 127.0 12.0 120 97-248 1-122 (160)
74 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.5 3.8E-14 8.3E-19 137.4 9.7 136 331-492 29-195 (231)
75 cd04182 GT_2_like_f GT_2_like_ 99.4 1.1E-12 2.3E-17 122.3 12.4 120 95-243 1-122 (186)
76 PLN02728 2-C-methyl-D-erythrit 99.4 1.9E-11 4.1E-16 120.3 20.8 221 89-372 19-245 (252)
77 cd02503 MobA MobA catalyzes th 99.4 5E-12 1.1E-16 117.8 15.0 107 95-237 1-109 (181)
78 PRK00317 mobA molybdopterin-gu 99.4 1.4E-11 3E-16 116.3 17.4 114 92-239 1-116 (193)
79 cd04651 LbH_G1P_AT_C Glucose-1 99.4 2.7E-12 5.9E-17 109.2 10.7 80 396-494 1-81 (104)
80 TIGR03584 PseF pseudaminic aci 99.3 1.8E-10 4E-15 111.3 21.2 215 97-371 2-220 (222)
81 COG2068 Uncharacterized MobA-r 99.3 9.4E-11 2E-15 109.1 18.1 121 92-240 3-125 (199)
82 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 8E-12 1.7E-16 101.2 9.5 77 393-488 2-80 (81)
83 TIGR02665 molyb_mobA molybdopt 99.3 8.3E-11 1.8E-15 110.1 16.0 117 95-243 1-119 (186)
84 COG1212 KdsB CMP-2-keto-3-deox 99.3 3.8E-10 8.3E-15 105.9 19.2 235 93-373 2-244 (247)
85 COG2266 GTP:adenosylcobinamide 99.3 4.2E-11 9.1E-16 108.5 11.5 110 95-238 1-112 (177)
86 PRK02726 molybdopterin-guanine 99.3 2.9E-10 6.3E-15 108.2 17.6 112 93-238 6-119 (200)
87 PRK00560 molybdopterin-guanine 99.2 4.5E-10 9.8E-15 106.5 18.1 107 89-233 3-112 (196)
88 KOG1461 Translation initiation 99.2 1.9E-11 4.1E-16 128.9 7.7 91 384-493 327-420 (673)
89 cd03356 LbH_G1P_AT_C_like Left 99.2 9.5E-11 2.1E-15 94.2 9.5 75 393-486 2-79 (79)
90 PRK14489 putative bifunctional 99.2 7.5E-10 1.6E-14 114.9 18.3 120 92-243 3-124 (366)
91 KOG1462 Translation initiation 99.2 3E-11 6.6E-16 120.9 6.4 69 406-493 334-403 (433)
92 PF01128 IspD: 2-C-methyl-D-er 99.2 3E-09 6.6E-14 102.4 20.0 216 95-371 1-219 (221)
93 cd02518 GT2_SpsF SpsF is a gly 99.1 1.9E-09 4.2E-14 104.7 17.7 115 97-245 2-121 (233)
94 TIGR03202 pucB xanthine dehydr 99.1 6.4E-10 1.4E-14 104.7 13.1 123 96-242 2-126 (190)
95 COG1211 IspD 4-diphosphocytidy 99.1 1.1E-08 2.4E-13 98.3 20.3 222 92-372 2-227 (230)
96 PRK14490 putative bifunctional 99.1 4.4E-09 9.5E-14 109.4 18.3 113 89-236 169-283 (369)
97 cd05636 LbH_G1P_TT_C_like Puta 99.1 6.3E-10 1.4E-14 102.3 10.4 90 384-492 11-104 (163)
98 cd04193 UDPGlcNAc_PPase UDPGlc 99.1 6.6E-09 1.4E-13 105.7 18.2 216 93-324 14-257 (323)
99 cd03353 LbH_GlmU_C N-acetyl-gl 99.1 5.4E-10 1.2E-14 105.6 9.4 103 390-495 33-139 (193)
100 cd05787 LbH_eIF2B_epsilon eIF- 99.1 8.6E-10 1.9E-14 88.3 9.1 74 393-485 2-78 (79)
101 cd04652 LbH_eIF2B_gamma_C eIF- 99.1 6.3E-10 1.4E-14 90.0 8.3 66 408-492 1-67 (81)
102 cd03356 LbH_G1P_AT_C_like Left 99.1 7.1E-10 1.5E-14 89.0 8.4 66 408-492 1-67 (79)
103 cd05824 LbH_M1P_guanylylT_C Ma 99.0 1.2E-09 2.6E-14 88.2 9.5 73 395-486 4-80 (80)
104 cd05787 LbH_eIF2B_epsilon eIF- 99.0 1.3E-09 2.8E-14 87.3 8.2 66 408-492 1-67 (79)
105 cd05636 LbH_G1P_TT_C_like Puta 99.0 9.5E-10 2.1E-14 101.1 8.3 72 383-454 22-102 (163)
106 COG0746 MobA Molybdopterin-gua 99.0 1.3E-08 2.8E-13 96.0 15.7 113 92-241 2-116 (192)
107 cd04180 UGPase_euk_like Eukary 99.0 4.3E-08 9.3E-13 97.3 19.5 214 95-323 1-241 (266)
108 cd05635 LbH_unknown Uncharacte 99.0 3.3E-09 7E-14 89.7 9.7 68 406-494 29-98 (101)
109 cd04745 LbH_paaY_like paaY-lik 99.0 3.4E-09 7.3E-14 96.7 9.9 92 382-492 10-113 (155)
110 TIGR02287 PaaY phenylacetic ac 98.9 4.7E-09 1E-13 99.0 9.1 91 383-492 19-121 (192)
111 cd05824 LbH_M1P_guanylylT_C Ma 98.9 5.2E-09 1.1E-13 84.4 8.0 65 409-492 2-68 (80)
112 cd03353 LbH_GlmU_C N-acetyl-gl 98.9 6.3E-09 1.4E-13 98.3 9.7 95 391-488 16-115 (193)
113 TIGR02287 PaaY phenylacetic ac 98.9 7.9E-09 1.7E-13 97.5 10.1 68 406-492 26-103 (192)
114 TIGR01853 lipid_A_lpxD UDP-3-O 98.9 1.6E-08 3.5E-13 103.2 12.9 97 354-450 66-168 (324)
115 cd04745 LbH_paaY_like paaY-lik 98.9 1.2E-08 2.6E-13 93.0 10.6 68 406-492 18-95 (155)
116 PRK05293 glgC glucose-1-phosph 98.9 4.9E-09 1.1E-13 109.5 8.7 82 390-491 293-380 (380)
117 PRK14500 putative bifunctional 98.9 6.7E-08 1.5E-12 99.2 16.7 109 94-237 160-270 (346)
118 PLN02474 UTP--glucose-1-phosph 98.8 1.1E-06 2.4E-11 92.7 24.7 351 92-482 77-467 (469)
119 PRK13627 carnitine operon prot 98.8 2.7E-08 5.8E-13 94.2 10.9 52 422-492 71-123 (196)
120 cd04646 LbH_Dynactin_6 Dynacti 98.8 2E-08 4.3E-13 92.5 9.7 92 382-492 9-118 (164)
121 COG1044 LpxD UDP-3-O-[3-hydrox 98.8 4.9E-08 1.1E-12 97.5 12.9 42 358-399 78-126 (338)
122 TIGR03570 NeuD_NnaD sugar O-ac 98.8 7.5E-08 1.6E-12 90.7 13.3 121 353-492 61-188 (201)
123 PLN02472 uncharacterized prote 98.8 2.3E-08 4.9E-13 97.8 9.9 68 407-493 99-179 (246)
124 PLN02296 carbonate dehydratase 98.8 4.2E-08 9.1E-13 97.2 11.5 95 380-493 60-172 (269)
125 PRK14356 glmU bifunctional N-a 98.8 1.5E-08 3.2E-13 108.3 9.0 96 390-488 263-369 (456)
126 PRK14353 glmU bifunctional N-a 98.8 1.7E-08 3.6E-13 107.7 9.1 97 392-491 305-414 (446)
127 cd04650 LbH_FBP Ferripyochelin 98.8 3.5E-08 7.5E-13 90.0 9.7 94 380-492 8-113 (154)
128 PRK00892 lpxD UDP-3-O-[3-hydro 98.8 6.9E-08 1.5E-12 99.5 13.0 94 357-450 76-177 (343)
129 COG1083 NeuA CMP-N-acetylneura 98.8 3E-07 6.5E-12 86.1 15.7 220 92-373 1-224 (228)
130 PTZ00339 UDP-N-acetylglucosami 98.8 6.5E-07 1.4E-11 95.3 20.3 215 93-323 105-351 (482)
131 PLN02296 carbonate dehydratase 98.8 3.8E-08 8.2E-13 97.5 10.3 86 384-492 52-153 (269)
132 cd04645 LbH_gamma_CA_like Gamm 98.8 3.7E-08 8E-13 89.6 9.2 92 382-492 9-112 (153)
133 TIGR01173 glmU UDP-N-acetylglu 98.7 1.3E-08 2.8E-13 108.5 7.0 86 401-494 308-403 (451)
134 cd03358 LbH_WxcM_N_like WcxM-l 98.7 3.5E-08 7.5E-13 85.4 8.4 84 406-492 16-102 (119)
135 COG0663 PaaY Carbonic anhydras 98.7 4.5E-08 9.8E-13 89.5 9.3 99 380-497 19-129 (176)
136 PRK14358 glmU bifunctional N-a 98.7 1.5E-08 3.2E-13 109.2 6.8 111 385-495 283-413 (481)
137 cd04651 LbH_G1P_AT_C Glucose-1 98.7 3.8E-08 8.2E-13 83.6 8.0 90 382-491 5-98 (104)
138 cd04650 LbH_FBP Ferripyochelin 98.7 7.4E-08 1.6E-12 87.8 10.4 68 406-492 18-95 (154)
139 TIGR03308 phn_thr-fam phosphon 98.7 4.3E-08 9.4E-13 93.5 9.2 57 382-439 12-70 (204)
140 TIGR00965 dapD 2,3,4,5-tetrahy 98.7 4.5E-08 9.7E-13 95.9 9.1 27 465-491 180-207 (269)
141 cd03351 LbH_UDP-GlcNAc_AT UDP- 98.7 5.6E-08 1.2E-12 96.0 9.7 33 406-438 47-93 (254)
142 cd00710 LbH_gamma_CA Gamma car 98.7 9.4E-08 2E-12 88.3 10.4 66 407-491 43-115 (167)
143 PRK05289 UDP-N-acetylglucosami 98.7 5.9E-08 1.3E-12 96.2 9.4 56 383-438 7-66 (262)
144 COG1044 LpxD UDP-3-O-[3-hydrox 98.7 7E-08 1.5E-12 96.4 9.3 90 406-495 147-256 (338)
145 TIGR03308 phn_thr-fam phosphon 98.7 1.1E-07 2.4E-12 90.7 10.2 61 394-454 6-68 (204)
146 PRK13627 carnitine operon prot 98.7 1.2E-07 2.6E-12 89.9 10.3 68 406-492 28-105 (196)
147 PLN02472 uncharacterized prote 98.7 6.3E-08 1.4E-12 94.7 8.5 83 387-492 62-160 (246)
148 TIGR01853 lipid_A_lpxD UDP-3-O 98.7 6.2E-08 1.4E-12 98.9 8.7 33 406-438 139-173 (324)
149 cd03350 LbH_THP_succinylT 2,3, 98.7 1.3E-07 2.9E-12 84.6 9.8 97 387-493 10-111 (139)
150 TIGR01852 lipid_A_lpxA acyl-[a 98.7 1.1E-07 2.3E-12 94.0 9.8 35 406-440 46-94 (254)
151 cd03360 LbH_AT_putative Putati 98.7 3.3E-07 7.2E-12 85.4 12.6 120 354-492 59-185 (197)
152 cd04645 LbH_gamma_CA_like Gamm 98.6 2.3E-07 4.9E-12 84.4 10.8 67 406-491 17-93 (153)
153 PRK14359 glmU bifunctional N-a 98.6 5.5E-08 1.2E-12 103.2 7.5 99 391-492 283-402 (430)
154 PRK02862 glgC glucose-1-phosph 98.6 9.5E-08 2.1E-12 101.5 9.0 66 390-474 308-393 (429)
155 cd04646 LbH_Dynactin_6 Dynacti 98.6 2.8E-07 6.1E-12 84.9 10.6 52 388-443 3-59 (164)
156 TIGR01852 lipid_A_lpxA acyl-[a 98.6 1.3E-07 2.7E-12 93.5 8.8 32 407-438 29-62 (254)
157 PRK00844 glgC glucose-1-phosph 98.6 9.1E-08 2E-12 100.9 8.2 68 389-475 314-382 (407)
158 cd03360 LbH_AT_putative Putati 98.6 2.2E-07 4.8E-12 86.6 10.0 84 391-493 91-180 (197)
159 PRK12461 UDP-N-acetylglucosami 98.6 1.7E-07 3.6E-12 92.5 9.4 33 406-438 29-63 (255)
160 cd03351 LbH_UDP-GlcNAc_AT UDP- 98.6 1.7E-07 3.7E-12 92.5 9.5 15 423-437 103-117 (254)
161 PRK09451 glmU bifunctional N-a 98.6 5.3E-08 1.1E-12 104.2 6.1 95 392-494 302-407 (456)
162 COG1207 GlmU N-acetylglucosami 98.6 8.4E-08 1.8E-12 98.0 6.9 88 391-481 269-361 (460)
163 COG0448 GlgC ADP-glucose pyrop 98.6 1.4E-07 3E-12 96.3 7.9 68 389-476 295-363 (393)
164 PRK14357 glmU bifunctional N-a 98.5 1.1E-07 2.4E-12 101.5 6.8 94 393-494 293-396 (448)
165 PRK00892 lpxD UDP-3-O-[3-hydro 98.5 1.8E-07 3.8E-12 96.5 8.2 33 406-438 148-182 (343)
166 PRK11830 dapD 2,3,4,5-tetrahyd 98.5 2.9E-07 6.3E-12 90.9 9.0 28 465-492 183-211 (272)
167 cd03359 LbH_Dynactin_5 Dynacti 98.5 5.7E-07 1.2E-11 82.6 10.4 67 406-491 42-123 (161)
168 PRK14354 glmU bifunctional N-a 98.5 2.1E-07 4.5E-12 99.6 8.1 95 393-495 303-407 (458)
169 PLN02241 glucose-1-phosphate a 98.5 4.6E-07 1E-11 96.5 9.9 55 391-445 316-390 (436)
170 PRK00725 glgC glucose-1-phosph 98.5 3.2E-07 6.8E-12 97.4 8.6 67 389-474 326-393 (425)
171 cd00208 LbetaH Left-handed par 98.5 6.7E-07 1.5E-11 70.8 8.3 36 407-442 1-38 (78)
172 COG1208 GCD1 Nucleoside-diphos 98.5 4.5E-07 9.7E-12 94.0 9.2 57 389-445 260-319 (358)
173 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.5 4.4E-07 9.5E-12 88.2 8.6 88 406-493 98-190 (231)
174 PRK14355 glmU bifunctional N-a 98.5 4.1E-07 9E-12 97.4 8.9 64 387-450 283-349 (459)
175 PRK11830 dapD 2,3,4,5-tetrahyd 98.4 7.1E-07 1.5E-11 88.2 9.2 32 407-438 133-166 (272)
176 cd03352 LbH_LpxD UDP-3-O-acyl- 98.4 7.2E-07 1.6E-11 85.0 8.8 53 385-437 14-70 (205)
177 PRK05289 UDP-N-acetylglucosami 98.4 8.4E-07 1.8E-11 88.0 9.5 34 406-439 50-97 (262)
178 KOG1460 GDP-mannose pyrophosph 98.4 5.3E-07 1.1E-11 87.9 7.6 101 380-485 290-398 (407)
179 PRK14360 glmU bifunctional N-a 98.4 5.3E-07 1.1E-11 96.2 8.1 66 406-491 280-347 (450)
180 cd03350 LbH_THP_succinylT 2,3, 98.4 2.6E-06 5.7E-11 76.1 10.4 26 465-490 76-102 (139)
181 PRK14352 glmU bifunctional N-a 98.4 9.7E-07 2.1E-11 95.2 9.0 43 404-446 320-364 (482)
182 PRK11132 cysE serine acetyltra 98.4 5.1E-07 1.1E-11 89.3 5.7 79 407-492 148-228 (273)
183 cd00710 LbH_gamma_CA Gamma car 98.3 2.9E-06 6.2E-11 78.4 10.1 71 406-495 64-136 (167)
184 TIGR02091 glgC glucose-1-phosp 98.3 1.1E-06 2.4E-11 91.1 7.6 68 389-475 293-361 (361)
185 TIGR00965 dapD 2,3,4,5-tetrahy 98.3 2.7E-06 5.8E-11 83.6 9.8 31 407-437 130-162 (269)
186 TIGR03570 NeuD_NnaD sugar O-ac 98.3 3.2E-06 6.9E-11 79.6 9.9 15 423-437 154-168 (201)
187 COG1043 LpxA Acyl-[acyl carrie 98.3 2.9E-06 6.4E-11 80.7 9.3 112 382-493 7-136 (260)
188 cd03358 LbH_WxcM_N_like WcxM-l 98.3 3E-06 6.6E-11 73.2 8.8 15 423-437 68-82 (119)
189 COG0663 PaaY Carbonic anhydras 98.3 7.6E-06 1.6E-10 75.0 11.1 89 391-493 12-107 (176)
190 TIGR03536 DapD_gpp 2,3,4,5-tet 98.3 4.9E-06 1.1E-10 82.7 10.6 98 386-494 180-285 (341)
191 PRK10502 putative acyl transfe 98.3 5.9E-06 1.3E-10 77.5 10.4 51 386-438 53-107 (182)
192 TIGR02092 glgD glucose-1-phosp 98.3 1.4E-06 3.1E-11 90.5 6.7 73 383-476 283-356 (369)
193 PRK12461 UDP-N-acetylglucosami 98.3 3.2E-06 6.9E-11 83.4 8.8 16 423-438 78-93 (255)
194 cd03359 LbH_Dynactin_5 Dynacti 98.2 6.9E-06 1.5E-10 75.4 10.1 81 406-492 21-106 (161)
195 PLN02694 serine O-acetyltransf 98.2 2.9E-06 6.3E-11 84.1 8.0 28 465-492 219-247 (294)
196 cd00897 UGPase_euk Eukaryotic 98.2 0.00011 2.3E-09 74.0 19.3 214 93-324 2-234 (300)
197 COG2171 DapD Tetrahydrodipicol 98.2 2.8E-06 6E-11 82.3 7.5 92 385-492 115-217 (271)
198 TIGR01208 rmlA_long glucose-1- 98.2 3.3E-06 7.2E-11 87.3 8.2 85 381-485 257-352 (353)
199 cd04649 LbH_THP_succinylT_puta 98.2 1.1E-05 2.4E-10 72.0 10.2 94 388-493 11-107 (147)
200 PRK09527 lacA galactoside O-ac 98.2 9E-06 2E-10 77.4 10.0 51 387-439 58-112 (203)
201 cd03352 LbH_LpxD UDP-3-O-acyl- 98.2 8.9E-06 1.9E-10 77.4 9.9 107 382-491 5-130 (205)
202 PF02348 CTP_transf_3: Cytidyl 98.2 0.00022 4.8E-09 68.2 19.2 181 96-319 1-189 (217)
203 cd05635 LbH_unknown Uncharacte 98.1 7.8E-06 1.7E-10 69.1 7.7 63 393-475 32-96 (101)
204 PLN02357 serine acetyltransfer 98.1 6.5E-06 1.4E-10 83.9 8.3 27 465-491 285-312 (360)
205 TIGR01172 cysE serine O-acetyl 98.1 8.3E-06 1.8E-10 75.0 8.1 28 465-492 120-148 (162)
206 PF07959 Fucokinase: L-fucokin 98.1 1.4E-05 3.1E-10 84.2 10.8 96 215-323 54-158 (414)
207 TIGR01172 cysE serine O-acetyl 98.1 1.3E-05 2.8E-10 73.7 9.2 55 385-439 62-130 (162)
208 PF01704 UDPGP: UTP--glucose-1 98.1 0.00012 2.6E-09 77.2 17.1 215 92-324 54-289 (420)
209 cd03357 LbH_MAT_GAT Maltose O- 98.1 2.4E-05 5.2E-10 72.4 10.6 94 389-492 47-153 (169)
210 PRK10092 maltose O-acetyltrans 98.1 1.9E-05 4.2E-10 74.0 9.5 46 390-438 59-109 (183)
211 cd03354 LbH_SAT Serine acetylt 98.1 2.1E-05 4.5E-10 66.2 8.8 63 407-492 23-89 (101)
212 cd04647 LbH_MAT_like Maltose O 98.1 2E-05 4.3E-10 66.8 8.7 27 465-491 65-92 (109)
213 PLN02435 probable UDP-N-acetyl 98.1 0.00019 4.2E-09 76.5 17.8 216 92-323 114-364 (493)
214 PRK09677 putative lipopolysacc 98.1 2.2E-05 4.7E-10 74.3 9.6 35 406-440 65-103 (192)
215 PRK13412 fkp bifunctional fuco 98.0 5.6E-05 1.2E-09 86.2 13.9 198 216-442 154-374 (974)
216 cd04649 LbH_THP_succinylT_puta 98.0 1.8E-05 4E-10 70.6 8.0 28 463-492 72-100 (147)
217 TIGR03535 DapD_actino 2,3,4,5- 98.0 2.9E-05 6.3E-10 76.9 9.1 29 465-494 232-260 (319)
218 TIGR03535 DapD_actino 2,3,4,5- 98.0 3.5E-05 7.6E-10 76.3 9.4 32 460-493 221-253 (319)
219 PLN02830 UDP-sugar pyrophospho 98.0 0.0058 1.2E-07 67.3 27.4 222 92-324 126-384 (615)
220 cd05825 LbH_wcaF_like wcaF-lik 98.0 5E-05 1.1E-09 64.7 9.1 32 407-438 4-39 (107)
221 PLN02739 serine acetyltransfer 97.9 3E-05 6.5E-10 78.5 8.2 27 465-491 264-291 (355)
222 cd04647 LbH_MAT_like Maltose O 97.9 4.6E-05 1E-09 64.5 8.2 28 465-492 59-87 (109)
223 COG1861 SpsF Spore coat polysa 97.9 0.00019 4.1E-09 67.8 12.1 115 95-244 3-124 (241)
224 PRK10191 putative acyl transfe 97.9 7.9E-05 1.7E-09 67.2 9.3 28 465-492 99-127 (146)
225 COG4284 UDP-glucose pyrophosph 97.9 0.00042 9.1E-09 72.6 15.8 213 92-321 103-337 (472)
226 PRK10191 putative acyl transfe 97.9 6.8E-05 1.5E-09 67.6 8.8 66 406-490 67-142 (146)
227 PLN02357 serine acetyltransfer 97.9 6.5E-05 1.4E-09 76.7 9.5 89 387-494 229-332 (360)
228 cd06424 UGGPase UGGPase cataly 97.9 0.00067 1.5E-08 68.6 16.5 215 96-324 2-253 (315)
229 COG1043 LpxA Acyl-[acyl carrie 97.8 4.2E-05 9.1E-10 72.9 7.2 54 385-438 4-61 (260)
230 PLN02694 serine O-acetyltransf 97.8 7.2E-05 1.6E-09 74.3 8.8 59 387-445 163-236 (294)
231 cd00208 LbetaH Left-handed par 97.8 9.2E-05 2E-09 58.3 7.9 26 465-490 51-77 (78)
232 PRK10502 putative acyl transfe 97.8 4.5E-05 9.7E-10 71.5 6.8 27 465-491 131-158 (182)
233 COG1045 CysE Serine acetyltran 97.8 8.2E-05 1.8E-09 69.1 7.8 27 465-491 126-153 (194)
234 PRK00576 molybdopterin-guanine 97.8 0.00096 2.1E-08 62.0 15.1 96 115-239 3-102 (178)
235 PRK11132 cysE serine acetyltra 97.7 0.0002 4.3E-09 71.0 9.6 55 387-441 144-212 (273)
236 PLN02739 serine acetyltransfer 97.7 0.00021 4.7E-09 72.4 9.7 54 387-440 208-275 (355)
237 cd03354 LbH_SAT Serine acetylt 97.5 0.0003 6.5E-09 59.1 7.4 17 423-439 55-71 (101)
238 TIGR03536 DapD_gpp 2,3,4,5-tet 97.5 0.00051 1.1E-08 68.6 10.0 34 457-492 243-277 (341)
239 PRK10092 maltose O-acetyltrans 97.5 0.00047 1E-08 64.7 8.7 16 475-490 147-162 (183)
240 PRK09527 lacA galactoside O-ac 97.5 0.00057 1.2E-08 65.1 9.2 28 465-492 138-166 (203)
241 PRK09677 putative lipopolysacc 97.4 0.00097 2.1E-08 63.0 10.2 28 465-492 131-165 (192)
242 cd03357 LbH_MAT_GAT Maltose O- 97.4 0.0013 2.8E-08 60.8 10.7 48 390-437 62-133 (169)
243 cd03349 LbH_XAT Xenobiotic acy 97.3 0.00074 1.6E-08 60.9 7.3 28 465-492 80-108 (145)
244 COG0110 WbbJ Acetyltransferase 97.2 0.0012 2.6E-08 61.8 8.1 83 406-493 67-154 (190)
245 cd05825 LbH_wcaF_like wcaF-lik 97.2 0.0022 4.9E-08 54.5 8.9 27 465-491 63-90 (107)
246 COG2171 DapD Tetrahydrodipicol 97.2 0.0011 2.3E-08 64.6 7.5 47 390-440 108-156 (271)
247 COG1045 CysE Serine acetyltran 97.1 0.0024 5.2E-08 59.5 8.9 60 385-444 68-141 (194)
248 KOG4042 Dynactin subunit p27/W 97.1 0.0011 2.3E-08 58.7 6.0 105 389-496 7-134 (190)
249 PF00132 Hexapep: Bacterial tr 97.0 0.0006 1.3E-08 45.9 3.0 33 406-438 1-35 (36)
250 KOG1322 GDP-mannose pyrophosph 96.9 0.0018 3.9E-08 64.7 6.4 47 400-446 275-323 (371)
251 PF14602 Hexapep_2: Hexapeptid 96.9 0.0011 2.4E-08 44.3 3.3 30 407-437 2-32 (34)
252 TIGR02353 NRPS_term_dom non-ri 96.9 0.0029 6.2E-08 71.3 8.4 82 406-494 597-682 (695)
253 KOG3121 Dynactin, subunit p25 96.8 0.0018 3.9E-08 56.9 4.9 50 424-492 86-136 (184)
254 TIGR02353 NRPS_term_dom non-ri 96.8 0.0038 8.3E-08 70.3 8.4 27 465-491 167-194 (695)
255 KOG2638 UDP-glucose pyrophosph 96.7 0.14 3E-06 53.0 18.1 357 92-485 101-496 (498)
256 COG4801 Predicted acyltransfer 96.7 0.0056 1.2E-07 58.2 7.2 74 402-493 29-104 (277)
257 PF00132 Hexapep: Bacterial tr 96.3 0.0069 1.5E-07 40.6 4.0 27 465-491 8-35 (36)
258 COG4801 Predicted acyltransfer 96.2 0.014 3E-07 55.6 6.8 64 406-493 22-86 (277)
259 cd03349 LbH_XAT Xenobiotic acy 96.1 0.022 4.8E-07 51.3 7.5 32 464-495 73-105 (145)
260 KOG3121 Dynactin, subunit p25 95.7 0.012 2.7E-07 51.7 4.1 32 406-437 84-116 (184)
261 cd00761 Glyco_tranf_GTA_type G 95.2 0.44 9.6E-06 40.8 12.5 98 119-237 2-102 (156)
262 PF14602 Hexapep_2: Hexapeptid 95.1 0.041 9E-07 36.6 4.0 14 424-437 3-16 (34)
263 KOG4750 Serine O-acetyltransfe 95.0 0.042 9.2E-07 52.2 5.3 16 475-490 218-233 (269)
264 COG0110 WbbJ Acetyltransferase 94.6 0.13 2.9E-06 47.8 8.0 26 465-490 131-157 (190)
265 TIGR03552 F420_cofC 2-phospho- 94.6 0.15 3.2E-06 47.9 8.2 84 127-237 31-116 (195)
266 KOG4750 Serine O-acetyltransfe 94.3 0.1 2.2E-06 49.7 6.1 26 466-491 202-228 (269)
267 PF07959 Fucokinase: L-fucokin 92.9 0.19 4.1E-06 53.3 6.1 100 339-445 222-324 (414)
268 PF00535 Glycos_transf_2: Glyc 91.7 3.1 6.8E-05 36.3 11.7 109 119-248 3-114 (169)
269 cd02525 Succinoglycan_BP_ExoA 81.5 21 0.00045 33.8 11.6 105 119-245 5-114 (249)
270 cd04179 DPM_DPG-synthase_like 80.4 20 0.00044 32.2 10.6 107 120-247 3-114 (185)
271 cd04186 GT_2_like_c Subfamily 79.1 42 0.00091 29.1 12.1 98 119-240 2-102 (166)
272 cd06439 CESA_like_1 CESA_like_ 78.1 40 0.00088 32.1 12.5 98 118-238 33-135 (251)
273 cd06434 GT2_HAS Hyaluronan syn 76.8 41 0.00088 31.6 12.0 97 119-238 5-103 (235)
274 KOG2388 UDP-N-acetylglucosamin 75.1 3.3 7.1E-05 44.0 4.0 127 93-225 96-248 (477)
275 PRK13412 fkp bifunctional fuco 74.2 4.7 0.0001 47.1 5.3 54 418-490 332-387 (974)
276 cd06442 DPM1_like DPM1_like re 73.1 51 0.0011 30.6 11.5 107 119-246 2-112 (224)
277 cd06423 CESA_like CESA_like is 71.8 55 0.0012 28.1 10.8 101 119-239 2-105 (180)
278 cd04188 DPG_synthase DPG_synth 70.1 58 0.0013 30.2 11.1 109 119-247 2-117 (211)
279 cd06427 CESA_like_2 CESA_like_ 69.8 69 0.0015 30.5 11.8 109 119-247 6-119 (241)
280 cd06433 GT_2_WfgS_like WfgS an 69.6 64 0.0014 28.9 11.1 97 119-239 3-102 (202)
281 cd04195 GT2_AmsE_like GT2_AmsE 68.4 85 0.0018 28.6 11.7 99 119-239 3-107 (201)
282 cd02510 pp-GalNAc-T pp-GalNAc- 68.2 75 0.0016 31.5 12.0 105 119-242 3-113 (299)
283 PRK10073 putative glycosyl tra 66.6 60 0.0013 33.1 11.1 106 119-246 11-119 (328)
284 cd04184 GT2_RfbC_Mx_like Myxoc 66.6 79 0.0017 28.7 11.1 98 119-237 6-108 (202)
285 PLN02726 dolichyl-phosphate be 63.7 68 0.0015 30.7 10.4 49 193-247 79-128 (243)
286 cd04192 GT_2_like_e Subfamily 62.7 1.1E+02 0.0023 28.3 11.4 106 119-242 2-112 (229)
287 cd06438 EpsO_like EpsO protein 62.1 1.2E+02 0.0026 27.3 12.4 106 119-244 2-112 (183)
288 cd04187 DPM1_like_bac Bacteria 57.7 1E+02 0.0022 27.6 9.9 105 120-246 3-113 (181)
289 PRK10018 putative glycosyl tra 54.3 2.3E+02 0.005 28.2 12.6 98 119-239 10-112 (279)
290 PF01983 CofC: Guanylyl transf 51.4 27 0.00059 33.6 5.0 106 95-237 1-113 (217)
291 PF04519 Bactofilin: Polymer-f 50.5 29 0.00063 28.7 4.6 28 465-492 70-97 (101)
292 PRK14583 hmsR N-glycosyltransf 50.0 1.6E+02 0.0035 31.3 11.3 101 118-239 79-182 (444)
293 cd02520 Glucosylceramide_synth 49.9 1.9E+02 0.004 26.5 10.5 103 119-237 6-111 (196)
294 COG1664 CcmA Integral membrane 49.0 46 0.001 30.0 5.8 26 465-490 91-116 (146)
295 PRK11204 N-glycosyltransferase 47.6 2.1E+02 0.0046 29.9 11.7 98 121-239 61-161 (420)
296 cd04185 GT_2_like_b Subfamily 47.5 2.2E+02 0.0048 25.8 11.1 100 120-238 3-105 (202)
297 PF13641 Glyco_tranf_2_3: Glyc 46.8 49 0.0011 30.9 6.1 105 119-242 6-116 (228)
298 cd06421 CESA_CelA_like CESA_Ce 46.4 2.4E+02 0.0053 26.1 12.0 107 119-247 6-118 (234)
299 cd04196 GT_2_like_d Subfamily 45.2 2.2E+02 0.0047 25.9 10.2 98 119-236 3-103 (214)
300 cd06420 GT2_Chondriotin_Pol_N 43.1 2.1E+02 0.0046 25.3 9.6 100 119-237 2-104 (182)
301 TIGR03469 HonB hopene-associat 42.7 3.9E+02 0.0085 27.7 12.7 112 121-244 47-165 (384)
302 cd06435 CESA_NdvC_like NdvC_li 42.0 2.3E+02 0.0049 26.5 10.0 102 119-238 3-110 (236)
303 TIGR01556 rhamnosyltran L-rham 41.8 3.4E+02 0.0073 26.4 11.5 90 128-240 9-101 (281)
304 cd02511 Beta4Glucosyltransfera 41.0 3.1E+02 0.0067 25.9 10.8 95 119-241 5-99 (229)
305 KOG2978 Dolichol-phosphate man 37.9 3.6E+02 0.0078 25.6 10.6 100 127-249 19-125 (238)
306 PRK11498 bcsA cellulose syntha 37.9 3.1E+02 0.0068 32.0 11.7 104 118-248 264-374 (852)
307 cd02522 GT_2_like_a GT_2_like_ 37.6 3.2E+02 0.007 25.0 11.8 94 119-240 4-100 (221)
308 PTZ00260 dolichyl-phosphate be 37.5 2.6E+02 0.0057 28.5 10.2 49 193-247 148-200 (333)
309 TIGR03472 HpnI hopanoid biosyn 36.3 2.4E+02 0.0051 29.2 9.8 101 119-238 46-152 (373)
310 TIGR03111 glyc2_xrt_Gpos1 puta 35.8 4.6E+02 0.01 27.8 12.1 99 120-239 55-158 (439)
311 PRK00923 sirohydrochlorin coba 34.9 53 0.0012 28.3 3.9 23 124-147 44-66 (126)
312 cd02526 GT2_RfbF_like RfbF is 30.2 4.5E+02 0.0097 24.4 12.0 93 120-234 3-97 (237)
313 COG1215 Glycosyltransferases, 26.6 4.5E+02 0.0097 27.3 10.1 105 118-241 58-166 (439)
314 PF04519 Bactofilin: Polymer-f 25.5 51 0.0011 27.2 2.1 26 420-445 27-53 (101)
315 COG1216 Predicted glycosyltran 25.3 6.8E+02 0.015 24.8 11.4 103 122-246 12-118 (305)
316 PRK13915 putative glucosyl-3-p 24.7 5.9E+02 0.013 25.6 10.1 50 193-248 101-153 (306)
317 COG0381 WecB UDP-N-acetylgluco 23.7 2.3E+02 0.005 29.7 6.8 80 133-227 23-105 (383)
318 COG1664 CcmA Integral membrane 23.1 2.9E+02 0.0063 24.8 6.6 10 465-474 108-117 (146)
319 PRK10063 putative glycosyl tra 22.6 7E+02 0.015 24.0 12.3 98 120-240 7-109 (248)
320 TIGR02990 ectoine_eutA ectoine 22.3 5.4E+02 0.012 25.1 8.8 63 93-159 70-137 (239)
321 PF05060 MGAT2: N-acetylglucos 22.3 1.6E+02 0.0035 30.6 5.3 55 106-160 23-80 (356)
322 cd03409 Chelatase_Class_II Cla 21.8 1.3E+02 0.0029 24.2 3.9 22 127-148 45-66 (101)
323 COG2266 GTP:adenosylcobinamide 21.1 1.9E+02 0.0042 26.9 5.0 68 305-373 91-169 (177)
324 cd06913 beta3GnTL1_like Beta 1 20.9 6.6E+02 0.014 23.1 11.1 108 119-241 2-113 (219)
325 TIGR03030 CelA cellulose synth 20.6 9E+02 0.019 27.6 11.5 47 194-247 215-262 (713)
326 PRK05782 bifunctional sirohydr 20.5 1.1E+02 0.0024 31.5 3.8 55 91-148 2-71 (335)
327 TIGR00288 conserved hypothetic 20.2 6.7E+02 0.015 22.9 9.3 32 213-248 105-136 (160)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-74 Score=579.50 Aligned_cols=355 Identities=43% Similarity=0.760 Sum_probs=328.4
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~ 170 (498)
++++-|+|||||.|+||.|||..||||.+|+||+|+|||++|+||.++||++|+|+|+|++.+|.+||.+.| |+.+..
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~- 81 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRK- 81 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccc-
Confidence 567889999999999999999999999999999999999999999999999999999999999999999888 755432
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
.+++.++++.|. +.++.|++|||+|++|.++++++ ...+++||++||++|++||.++++.|+++++++|+++.+
T Consensus 82 -~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 82 -NGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred -cCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 356899987765 23457999999999999999984 467899999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCc-cccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC--
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSG-ANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~-- 327 (498)
++.+++++||++.+|++|||++|.|||.. +. ...+++||+|+|++++|.++|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~--------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~ 215 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGPP--------------------SNSLASMGIYIFNTDLLKELLEEDAKDP 215 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCCc--------------------ccceeeeeeEEEcHHHHHHHHHHHhccc
Confidence 99999999999999999999999999987 21 12389999999999999999987543
Q ss_pred -CCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEe-cCeeee
Q 010874 328 -TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI-DNCRIK 405 (498)
Q Consensus 328 -~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~I~ 405 (498)
+..||+.++||.+++++.+++|+|+|||.||||+++|++||++|++..|.+.+|+++|+|++.....||+++ .++.+.
T Consensus 216 ~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~ 295 (393)
T COG0448 216 NSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVS 295 (393)
T ss_pred CccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEe
Confidence 467999999999999999999999999999999999999999999977889999999999999999999998 567789
Q ss_pred ceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEEC
Q 010874 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (498)
Q Consensus 406 ~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig 485 (498)
+|.|+.||+|.+ +|+||+|+.+++|+.+|.|++|+||++ |.||+||+|++|||++||+|+
T Consensus 296 nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~ 355 (393)
T COG0448 296 NSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIG 355 (393)
T ss_pred eeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeC
Confidence 999999999988 999999999999999999999999999 999999999999999999999
Q ss_pred CCcEEeCC
Q 010874 486 KDVVIVNK 493 (498)
Q Consensus 486 ~~~~i~~~ 493 (498)
+|++|.+.
T Consensus 356 ~g~~i~~~ 363 (393)
T COG0448 356 EGVVIGGD 363 (393)
T ss_pred CCcEEcCC
Confidence 99999998
No 2
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.4e-71 Score=538.29 Aligned_cols=346 Identities=42% Similarity=0.674 Sum_probs=308.0
Q ss_pred cCCCCCCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCC
Q 010874 87 RRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGN 166 (498)
Q Consensus 87 ~~~~~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~ 166 (498)
..+++ +.|+|+||.||.||||+|||.++||||+|+||+ |||+|+|++|.++||++|++.++|+++++++|+.+.|
T Consensus 3 ~~~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y--- 77 (371)
T KOG1322|consen 3 TRPAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY--- 77 (371)
T ss_pred ccccc-cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh---
Confidence 44566 899999999999999999999999999999987 9999999999999999999999999999999999988
Q ss_pred CCcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEE
Q 010874 167 GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITI 246 (498)
Q Consensus 167 ~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv 246 (498)
+.++| |+++.+.|++ +.|++||++++|+.+|.+++ .+|+||+||++|++||++|+|+|+++++++|+
T Consensus 78 ~~~lg---Vei~~s~ete----plgtaGpl~laR~~L~~~~~------~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI 144 (371)
T KOG1322|consen 78 GKELG---VEILASTETE----PLGTAGPLALARDFLWVFED------APFFVLNSDVICRMPYKEMVQFHRAHGAEITI 144 (371)
T ss_pred hhccc---eEEEEEeccC----CCcccchHHHHHHHhhhcCC------CcEEEecCCeeecCCHHHHHHHHHhcCCceEE
Confidence 33565 8999988865 68999999999999998862 48999999999999999999999999999999
Q ss_pred EEEecCCCCCCCceEEEECC-CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhh
Q 010874 247 SCAAVGESRASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (498)
Q Consensus 247 ~~~~~~~~~~~~~g~v~~d~-~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~ 325 (498)
++.++++ +++||+|++|+ +|+|.+|.|||++.. ++-.++|+|+|++++|.+++ .
T Consensus 145 ~~t~vde--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~--~ 199 (371)
T KOG1322|consen 145 VVTKVDE--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRIL--L 199 (371)
T ss_pred EEEeccC--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhh--h
Confidence 9999998 89999999998 999999999999542 24467999999999999886 4
Q ss_pred CCCCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEecCeeee
Q 010874 326 YPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIK 405 (498)
Q Consensus 326 ~~~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~ 405 (498)
+|+. |.+|++|.+++++++++|.++|||+|||+|+||+.+- .+|+.+.+.++++++.||+.+.++++.
T Consensus 200 ~ptS--iekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~----------~~Yl~s~~~~t~~r~~p~~~i~~nvlv 267 (371)
T KOG1322|consen 200 RPTS--IEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGF----------SFYLRSLPKYTSPRLLPGSKIVGNVLV 267 (371)
T ss_pred cccc--hhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHH----------HHHHhhCcccCCccccCCccccccEee
Confidence 4554 8899999999999999999999999999999999994 455556677889999999999999998
Q ss_pred ceEEcCCCEECceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEE
Q 010874 406 DAIISHGCFLRECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (498)
Q Consensus 406 ~s~Ig~~~~I~~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~I 484 (498)
|++++.| ++|.|. ||+||++|+|+.|++|++|+||++++|++++++++++.++++ .||.++ +|+++++|
T Consensus 268 d~~~~iG---~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~--~IG~~~-----~id~~a~l 337 (371)
T KOG1322|consen 268 DSIASIG---ENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNV--PIGIWA-----RIDKNAVL 337 (371)
T ss_pred ccccccC---CccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccc--cccCce-----EEecccEe
Confidence 8766554 455554 389999999999999999999999999999999999999984 455544 88899999
Q ss_pred CCCcEEeCCCCCC
Q 010874 485 GKDVVIVNKDESP 497 (498)
Q Consensus 485 g~~~~i~~~~~v~ 497 (498)
|+||+|.|.+.++
T Consensus 338 G~nV~V~d~~~vn 350 (371)
T KOG1322|consen 338 GKNVIVADEDYVN 350 (371)
T ss_pred ccceEEecccccc
Confidence 9999999998874
No 3
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=2.6e-64 Score=533.19 Aligned_cols=404 Identities=76% Similarity=1.278 Sum_probs=350.2
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~ 170 (498)
|++|+|||||||+||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| |+.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 678999999999999999999999999999999889999999999999999999999999999999998666 4433344
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
....+.++...|... .+.|++||++|++++++++++...++.++|||++||++++.|+.++++.|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~~--~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTPG--EKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccCC--CCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 434466666555321 234679999999999988864211225899999999999999999999999999999999998
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCC
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~ 330 (498)
++.+++++||++.+|++++|.+|.|||..+....+++++++|++++...+..++++++|+|+|++++|..+++..++...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87666789999999989999999999977666678999999998886555556899999999999999878776655555
Q ss_pred chhhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEecCeeeeceEE
Q 010874 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAII 409 (498)
Q Consensus 331 df~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~s~I 409 (498)
+|..++++.++++ .++++|.+++||.|||+|++|++|+++++...+...++++.+++++..+..+|+.+.+++|.+|+|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 7889999999987 689999999999999999999999999998777666777788888988888999998899999999
Q ss_pred cCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcE
Q 010874 410 SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVV 489 (498)
Q Consensus 410 g~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~ 489 (498)
+++|+|+++.|++|+||++|+||++|+|.+|++|+.++|+.......+...+.+++.||++|+|++++|++++.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999998899999999999999999999999999877776655555566676567999999999999999999999999
Q ss_pred EeCCCCCC
Q 010874 490 IVNKDESP 497 (498)
Q Consensus 490 i~~~~~v~ 497 (498)
|.+.+|++
T Consensus 399 i~~~~~~~ 406 (436)
T PLN02241 399 IINKDGVQ 406 (436)
T ss_pred EecccccC
Confidence 99999875
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=9.1e-61 Score=504.97 Aligned_cols=398 Identities=58% Similarity=1.005 Sum_probs=339.2
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|.-. .+.
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~--~~~ 78 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD--GFS 78 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc--ccC
Confidence 568999999999999999999999999999999989999999999999999999999999999999997544111 122
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.+.+.++...|... ...|++|||+||+++++++++ ...++|||++||++++.|+.++++.|++.++++|+++.+.
T Consensus 79 ~g~~~i~~~~~~~~--~~~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 153 (429)
T PRK02862 79 GGFVEVLAAQQTPE--NPSWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPV 153 (429)
T ss_pred CCEEEEeCCcccCC--CCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEec
Confidence 23355555444321 123558999999999998862 1237899999999999999999999999999999999877
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCc
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~d 331 (498)
+.++++.||++.+|++|+|..|.|||.......+.+++++|...+.......+++++|+|+|++++|..+++.. +...+
T Consensus 154 ~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~~ 232 (429)
T PRK02862 154 DEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYTD 232 (429)
T ss_pred ChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChhh
Confidence 65557789999999899999999999865556678888888777666555667999999999999998777653 23346
Q ss_pred hhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhh-ccCCCccccCCCCCCCCCCccCCCeEecCeeeeceEEc
Q 010874 332 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT-KESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIIS 410 (498)
Q Consensus 332 f~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll-~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~s~Ig 410 (498)
+..++++.+++++++++|.+++||.|||||++|++||+.++ ...|..+.+.+.+++++.+.+.+|+.+.+++|++++||
T Consensus 233 ~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig 312 (429)
T PRK02862 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIA 312 (429)
T ss_pred hHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEEC
Confidence 77899999998899999999999999999999999999999 54566667778889999999999999988999999999
Q ss_pred CCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEE
Q 010874 411 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 490 (498)
Q Consensus 411 ~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i 490 (498)
++|.|.++.|.+|+||++|+||++|+|.+|++|+.++|........++..+.+++.||++|.|++|+|++++.||+++++
T Consensus 313 ~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 313 EGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRI 392 (429)
T ss_pred CCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEE
Confidence 99999888999999999999999999999999998877776665566667777799999999999999999999999999
Q ss_pred eCCCCCC
Q 010874 491 VNKDESP 497 (498)
Q Consensus 491 ~~~~~v~ 497 (498)
.|.+.|+
T Consensus 393 ~~~~~~~ 399 (429)
T PRK02862 393 VNKDNVE 399 (429)
T ss_pred ecCCCcc
Confidence 9988653
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.2e-57 Score=473.79 Aligned_cols=361 Identities=37% Similarity=0.653 Sum_probs=298.5
Q ss_pred CCCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
.|++|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.| ... ..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~-~~~-~~ 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTW-RLS-GL 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCc-Ccc-cc
Confidence 4788999999999999999999999999999999989999999999999999999999999999999997443 110 11
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
....+..+...+. .+..|++|||+||+++++++.+ ...++|+|++||++++.|+.++++.|+++++++|+++..
T Consensus 80 ~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~ 153 (407)
T PRK00844 80 LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIR 153 (407)
T ss_pred CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEe
Confidence 1112222111111 1235678999999999999863 122569999999999999999999999999999999877
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC---C
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~---~ 327 (498)
++.+.++.||++.+|++|+|..|.|||..+... .. ...++++++|+|+|++++|.++++... .
T Consensus 154 ~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~--~~------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 219 (407)
T PRK00844 154 VPREEASAFGVIEVDPDGRIRGFLEKPADPPGL--PD------------DPDEALASMGNYVFTTDALVDALRRDAADED 219 (407)
T ss_pred cchHHcccCCEEEECCCCCEEEEEECCCCcccc--cC------------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCc
Confidence 654456789999999889999999998753210 00 012368999999999999877666422 1
Q ss_pred CCCchhhhhHHHHhhcCceEEEEE------------cceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCC
Q 010874 328 TSNDFGSEIIPAAIMEHDVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP 395 (498)
Q Consensus 328 ~~~df~~dii~~~i~~~~I~~~~~------------~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~ 395 (498)
...++.+++++.+++++++++|.+ ++||.||||+++|++||+.++++.+...++++..++++.....+
T Consensus 220 ~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~ 299 (407)
T PRK00844 220 SSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLP 299 (407)
T ss_pred ccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCC
Confidence 235677899999999999999977 59999999999999999999987766666677778888777778
Q ss_pred CeEe-cCe----eeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 396 PTKI-DNC----RIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 396 ~~~i-~~~----~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
|+.+ .++ .+.+++||++|.|++++|++|+||++|+|+++|+|++|+||++ +.||++
T Consensus 300 ~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~ 360 (407)
T PRK00844 300 PAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRG 360 (407)
T ss_pred CceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCC
Confidence 8776 332 5679999999999989999999999999999999999999999 999999
Q ss_pred cEEeeeEECCCCEECCCcEEeC
Q 010874 471 TKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 471 ~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
|+|.+|+|++++.||+++++.+
T Consensus 361 ~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 361 AVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred CEEEeeEECCCCEECCCCEECC
Confidence 9999999999999999999987
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.9e-56 Score=465.76 Aligned_cols=356 Identities=37% Similarity=0.639 Sum_probs=301.1
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~ 170 (498)
|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.. |+....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 678999999999999999999999999999999988999999999999999999999999999999986321 221111
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
...+.++...+.. ..+.|++||++||+++++++++ ...++|||++||++++.|+.++++.|++.++++|+++..
T Consensus 80 -~~~~~i~~~~~~~--~~~~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~ 153 (380)
T PRK05293 80 -NGGVTILPPYSES--EGGKWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIE 153 (380)
T ss_pred -CCCEEEeCCcccC--CCCcccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEE
Confidence 1235555322221 1235778999999999998852 123689999999999999999999999999999988877
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC---C
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~---~ 327 (498)
.+.+++..||++.+|++|+|..|.|||..+. .+++++|+|+|++++|..+++... .
T Consensus 154 ~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 212 (380)
T PRK05293 154 VPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPN 212 (380)
T ss_pred cchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCC
Confidence 6544577899999998899999999986432 367899999999999977776532 1
Q ss_pred CCCchhhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEe-cCeeee
Q 010874 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI-DNCRIK 405 (498)
Q Consensus 328 ~~~df~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~I~ 405 (498)
...+|.+++++.++++ .++++|.+++||.||||+++|++||+.++...+...++++...+.+.+.+.+|++| .+++|.
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 292 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK 292 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe
Confidence 2346778999999876 67999999999999999999999999999877766777888888888889999999 468899
Q ss_pred ceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEEC
Q 010874 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (498)
Q Consensus 406 ~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig 485 (498)
+++||+||+|++ .|.+|+||++|+||++|+|++|+++++ +.||++|+|.+|+|+++++|+
T Consensus 293 ~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~ 352 (380)
T PRK05293 293 NSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIG 352 (380)
T ss_pred cCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEEC
Confidence 999999999974 588999999999999999999999999 899999999999999999999
Q ss_pred CCcEEeCCCC
Q 010874 486 KDVVIVNKDE 495 (498)
Q Consensus 486 ~~~~i~~~~~ 495 (498)
+++.+.+...
T Consensus 353 ~~~~i~~~~~ 362 (380)
T PRK05293 353 DGVIIGGGKE 362 (380)
T ss_pred CCCEEcCCCc
Confidence 9999988543
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=7.1e-56 Score=467.21 Aligned_cols=363 Identities=38% Similarity=0.662 Sum_probs=302.6
Q ss_pred CCCCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCC-CC
Q 010874 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGN-GT 168 (498)
Q Consensus 90 ~~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~-~~ 168 (498)
-.+++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.| +. ..
T Consensus 11 ~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~-~~~~~ 89 (425)
T PRK00725 11 QLTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGW-SFFRE 89 (425)
T ss_pred hhhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhh-ccccc
Confidence 34578999999999999999999999999999999955999999999999999999999999999999997543 11 00
Q ss_pred cCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEE
Q 010874 169 NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 169 ~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~ 248 (498)
+. ...+.++...|.. ..+.|++|||+|++++++++++ ...++|+|++||++++.||.++++.|+++++++|+++
T Consensus 90 ~~-~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~ 163 (425)
T PRK00725 90 EL-GEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVAC 163 (425)
T ss_pred CC-CCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEE
Confidence 11 1245555544432 1234678999999999999862 1246899999999999999999999999999999998
Q ss_pred EecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC--
Q 010874 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY-- 326 (498)
Q Consensus 249 ~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~-- 326 (498)
.+++.+++..||++.+|++++|..|.|||..+.. ++. ....+++++|+|+|++++|.++|++..
T Consensus 164 ~~~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~~------------~~~~~l~n~GIYi~~~~~L~~~L~~~~~~ 229 (425)
T PRK00725 164 LEVPREEASAFGVMAVDENDRITAFVEKPANPPA--MPG------------DPDKSLASMGIYVFNADYLYELLEEDAED 229 (425)
T ss_pred EecchhhcccceEEEECCCCCEEEEEECCCCccc--ccc------------CccceEEEeeEEEEeHHHHHHHHHHhhcC
Confidence 8775555778999999988999999999864320 000 002468999999999999877776532
Q ss_pred -CCCCchhhhhHHHHhhcCceEEEEEc-----------ceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccC
Q 010874 327 -PTSNDFGSEIIPAAIMEHDVQAYIFR-----------DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFL 394 (498)
Q Consensus 327 -~~~~df~~dii~~~i~~~~I~~~~~~-----------~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~ 394 (498)
....+|.+++++.+++++++++|.++ +||.|||||++|++||++++...+...+++...++++.....
T Consensus 230 ~~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~ 309 (425)
T PRK00725 230 PNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQL 309 (425)
T ss_pred CCccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCC
Confidence 23457788999999999999999996 599999999999999999998777666777777888877788
Q ss_pred CCeEec----C--eeeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeC
Q 010874 395 PPTKID----N--CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (498)
Q Consensus 395 ~~~~i~----~--~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig 468 (498)
||+.+- + +.+.+|+||+||+|++|.|++|+||++|+||++|+|++|+||++ +.||
T Consensus 310 ~~~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~ 370 (425)
T PRK00725 310 PPAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVG 370 (425)
T ss_pred CCCeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEEC
Confidence 887652 2 45779999999999989999999999999999999999999999 9999
Q ss_pred CCcEEeeeEECCCCEECCCcEEeC
Q 010874 469 RNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 469 ~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
++|+|.+|+|+++++|+++++|..
T Consensus 371 ~~~~i~~~ii~~~~~i~~~~~i~~ 394 (425)
T PRK00725 371 RSCRLRRCVIDRGCVIPEGMVIGE 394 (425)
T ss_pred CCCEEeeEEECCCCEECCCCEECC
Confidence 999999999999999999999963
No 8
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=1.7e-53 Score=441.89 Aligned_cols=352 Identities=24% Similarity=0.414 Sum_probs=279.3
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCch-hHHHHHHhhc-cCCCCcC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTY-FGNGTNF 170 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~-~l~~hl~~~~-~~~~~~~ 170 (498)
++|+|||||||+||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+ ++.+|+.+.. |+.....
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 3689999999999999999999999999999998899999999999999999999999987 9999996422 3221111
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
. +...++ .|... .+-.|++++++.+++++++ ...++|||++||++++.||.+++++|+++++++|+++.+
T Consensus 81 ~-~~~~~~--~~e~~----~l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 150 (369)
T TIGR02092 81 D-GLFVFP--YNDRD----DLSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKK 150 (369)
T ss_pred C-cEEEEe--ccCCC----CcccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEe
Confidence 1 111112 12211 1224777789888888742 123789999999999999999999999999999999988
Q ss_pred cCCCCCCCc-eEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC-
Q 010874 251 VGESRASDY-GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (498)
Q Consensus 251 ~~~~~~~~~-g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~- 328 (498)
++.+.+..| +++..+++|+|..+.+++... ....+++|+|+|++++|.++++...+.
T Consensus 151 v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~---------------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 209 (369)
T TIGR02092 151 VKPADASEYDTILRFDESGKVKSIGQNLNPE---------------------EEENISLDIYIVSTDLLIELLYECIQRG 209 (369)
T ss_pred cCHHHccccCcEEEEcCCCCEEeccccCCCC---------------------CcceeeeeEEEEEHHHHHHHHHHHhhcC
Confidence 764345667 456677778888875433221 124578999999999887776654332
Q ss_pred CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCCCcccc-CCCCCCCCCCccCCCeEe-cCeeeec
Q 010874 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFY-DPKTPFYTSPRFLPPTKI-DNCRIKD 406 (498)
Q Consensus 329 ~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~-~~~~~i~~~~~i~~~~~i-~~~~I~~ 406 (498)
..++..++++.++++.++++|.+++||.|||||++|++||+++++++.....+ ....++++...+.+|++| .+++|.+
T Consensus 210 ~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~ 289 (369)
T TIGR02092 210 KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVEN 289 (369)
T ss_pred ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEE
Confidence 23456688998888889999999999999999999999999999876432222 223345555556689999 5689999
Q ss_pred eEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECC
Q 010874 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (498)
Q Consensus 407 s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~ 486 (498)
|+||+||.|+ +.|++|+||++|+|+++|+|++|+++++ +.|++++.+.+|+||++++||+
T Consensus 290 ~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~ 349 (369)
T TIGR02092 290 SLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEP 349 (369)
T ss_pred eEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECC
Confidence 9999999997 5799999999999999999999999999 9999999999999999999999
Q ss_pred CcEEeCCCC
Q 010874 487 DVVIVNKDE 495 (498)
Q Consensus 487 ~~~i~~~~~ 495 (498)
++.+.+...
T Consensus 350 ~~~~~~~~~ 358 (369)
T TIGR02092 350 NVKIAGTSE 358 (369)
T ss_pred CCEeCCCCC
Confidence 999987643
No 9
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=2.4e-52 Score=432.11 Aligned_cols=356 Identities=49% Similarity=0.837 Sum_probs=289.7
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
|||||||.||||+|||.++||||+||+|+||||+|++++|.++|+++|+|+++++.+++.+|+.+.| +..... ...++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-~~~~~~-~~~~~ 78 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGW-DFDGFI-DGFVT 78 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhcc-CccCcc-CCCEE
Confidence 6999999999999999999999999999977999999999999999999999999999999997543 211000 12355
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (498)
++...+.. ..+.|++||+++++.+.+++++ ...++|+|++||++++.++.++++.|+++++++|+++.+.+.+.+
T Consensus 79 ~~~~~~~~--~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~ 153 (361)
T TIGR02091 79 LLPAQQRE--SGTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEA 153 (361)
T ss_pred EeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhc
Confidence 55433321 2235678999999999988852 124689999999999999999999999888888998887765556
Q ss_pred CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC---CCCCchh
Q 010874 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTSNDFG 333 (498)
Q Consensus 257 ~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~---~~~~df~ 333 (498)
..||++.+|++++|..|.|||..+... .+. ...+++++|+|+|++++|..+++... ....+|.
T Consensus 154 ~~~g~v~~d~~~~v~~~~ekp~~~~~~--------~~~------~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~ 219 (361)
T TIGR02091 154 SRFGVMQVDEDGRIVDFEEKPANPPSI--------PGM------PDFALASMGIYIFDKDVLKELLEEDADDPESSHDFG 219 (361)
T ss_pred ccccEEEECCCCCEEEEEECCCCcccc--------ccc------ccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccH
Confidence 789999999889999999998644210 000 01248999999999999876766532 1234677
Q ss_pred hhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCC-CCccCCCeEecC-eeeeceEEcC
Q 010874 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYT-SPRFLPPTKIDN-CRIKDAIISH 411 (498)
Q Consensus 334 ~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~-~~~i~~~~~i~~-~~I~~s~Ig~ 411 (498)
+++++.+++++++++|.+++||.||||+++|++|+++++++.+....+....++.+ ...+.+++++.+ +.|.+|+||+
T Consensus 220 ~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~ 299 (361)
T TIGR02091 220 KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSE 299 (361)
T ss_pred HHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECC
Confidence 89999999999999999999999999999999999999987654444444444433 235566777754 5888999999
Q ss_pred CCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEe
Q 010874 412 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 412 ~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~ 491 (498)
+|+|+++.|.+|+||++|+|+++|+|.+|+++++ +.||++++|++|+||++++|+++++|.
T Consensus 300 ~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 300 GCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred CCEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeC
Confidence 9999966899999999999999999999999998 899999999999999999999999997
Q ss_pred C
Q 010874 492 N 492 (498)
Q Consensus 492 ~ 492 (498)
|
T Consensus 361 ~ 361 (361)
T TIGR02091 361 N 361 (361)
T ss_pred C
Confidence 6
No 10
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-51 Score=417.98 Aligned_cols=319 Identities=26% Similarity=0.458 Sum_probs=244.6
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
.|+|||||||.||||+|||.++||||+||+|+ |||+|+|++|.+.|+++|+|+++|..+++.+|+...+ .++ .
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~-----~~~-~ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGE-----GLG-V 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhccc-----ccC-C
Confidence 48999999999999999999999999999999 9999999999999999999999999999988886422 222 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCC
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (498)
.+.++.... ++|||++|+++.+++. .++|++++||++++.|+.+++++|+++.+.+|+....+.+
T Consensus 74 ~I~y~~e~~---------~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~ 138 (358)
T COG1208 74 RITYVVEKE---------PLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD 138 (358)
T ss_pred ceEEEecCC---------cCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCC
Confidence 244443222 3799999999998874 2899999999999999999999999998888988888877
Q ss_pred CCCCCceEEEECCC-CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCch
Q 010874 254 SRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (498)
Q Consensus 254 ~~~~~~g~v~~d~~-grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df 332 (498)
+ +.||++..+++ ++|.+|.|||..... .++++++|+|+|++++|. +++. ....+|
T Consensus 139 ~--~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~~ 194 (358)
T COG1208 139 P--SEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFDF 194 (358)
T ss_pred C--CcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCcccc
Confidence 4 78999998844 699999999953110 247999999999999997 3222 234567
Q ss_pred hhhhHHHHhhcCc-eEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCc-cCCCeEecCeeeeceEEc
Q 010874 333 GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPR-FLPPTKIDNCRIKDAIIS 410 (498)
Q Consensus 333 ~~dii~~~i~~~~-I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~-i~~~~~i~~~~I~~s~Ig 410 (498)
..++++.+++++. +++|.+++||.|||+|++|.+|+..+++....... ......+. +.. +++. ++.+||
T Consensus 195 ~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~-~~i~----gp~~ig 265 (358)
T COG1208 195 EEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPL----GPIEEPVVIIRS-AYII----GPVVIG 265 (358)
T ss_pred hhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccc----cccccccccccc-ceEe----CCEEEC
Confidence 7789999999987 99999999999999999999999999975432211 01101100 111 1111 255666
Q ss_pred CCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECC
Q 010874 411 HGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (498)
Q Consensus 411 ~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~ 486 (498)
.+|.|+ ++.|. +|+||++|+||++++|++|++|++ +.||++++|.+|||+.||+||+
T Consensus 266 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 266 PGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred CCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECC
Confidence 666666 45553 567777777777777777777776 6777777777777777777665
No 11
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=3.7e-47 Score=392.26 Aligned_cols=328 Identities=20% Similarity=0.345 Sum_probs=255.3
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEecc-CchhHHHHHHhhccCCCCcCCCCe
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~-~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
+|||||||.||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|++++ +.+++.+|+.. +..|+. .
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-----~~~~~~-~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-----GERFGA-K 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-----ccccCc-e
Confidence 589999999999999999999999999999 999999999999999999999999 88899888863 123331 1
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
+.++. +. +.+||+++++.++.+++ .++|+|++||++++.++.++++.|+++++++|+++.+.++
T Consensus 74 ~~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~- 137 (353)
T TIGR01208 74 ITYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD- 137 (353)
T ss_pred EEEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC-
Confidence 33332 21 23699999999998874 3689999999999999999999999999999999888765
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC--CCch
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~df 332 (498)
+..||++.++++++|..|.|||..+. +.++++|+|+|++.++. .++...+. .+.+
T Consensus 138 -~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~ 194 (353)
T TIGR01208 138 -PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELE 194 (353)
T ss_pred -hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEE
Confidence 56799988876779999999987542 36789999999997665 44543331 2344
Q ss_pred hhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEec-CeeeeceEEc
Q 010874 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIKDAIIS 410 (498)
Q Consensus 333 ~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~-~~~I~~s~Ig 410 (498)
..++++.++++ .+|++|.+++||.|||||++|++||+.++++... .+. ++.+.+.+.+|++|+ +++|.+++|+
T Consensus 195 l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~~----~i~~~~~i~~~~~i~~~~~i~~~~i~ 269 (353)
T TIGR01208 195 ITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EVQ----GVDDESKIRGRVVVGEGAKIVNSVIR 269 (353)
T ss_pred HHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-ccC----CcCCCCEEcCCEEECCCCEEeCCEEE
Confidence 67899999877 4799999999999999999999999999985321 111 245556666677763 4666666665
Q ss_pred CCCEEC-ceEEeccEECCCCEECCCCEE-----cceEEeCCccccchhHHHHhhcCCcccEEeCCC-cEEeeeEECCCCE
Q 010874 411 HGCFLR-ECTVEHSIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRN-TKIRNCIIDKNVK 483 (498)
Q Consensus 411 ~~~~I~-~~~v~~siIg~~~~Ig~~~~i-----~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~-~~i~~~iI~~~~~ 483 (498)
.+|.|| +|.|.+|+|+++|+||++|+| .+|+++++ +.|+.+ +++.+|+|+++++
T Consensus 270 ~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~-------------------~~i~~~~~~~~~~ii~~~~~ 330 (353)
T TIGR01208 270 GPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDE-------------------SVIEGVQARIVDSVIGKKVR 330 (353)
T ss_pred CCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCC-------------------CEEcCCcceeecCEEcCCCE
Confidence 556665 555555555555555555555 56666666 788877 4888999999999
Q ss_pred ECCCcEEeCC
Q 010874 484 IGKDVVIVNK 493 (498)
Q Consensus 484 Ig~~~~i~~~ 493 (498)
|++++.+.+.
T Consensus 331 i~~~~~~~~~ 340 (353)
T TIGR01208 331 IKGNRRRPGD 340 (353)
T ss_pred ECCCcccccc
Confidence 9999887653
No 12
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.7e-42 Score=369.55 Aligned_cols=355 Identities=22% Similarity=0.311 Sum_probs=265.6
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|++++|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|+++|++++++..+++.+|+.+.
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~--------- 67 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD--------- 67 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC---------
Confidence 5678999999999999984 789999999999 999999999999999999999999998898887521
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
..+.++. |.. .+||+++++.+++++++ ..++|++++||+ +...++.++++.|.+.+++++++..
T Consensus 68 -~~i~~~~--~~~-------~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~ 133 (459)
T PRK14355 68 -GDVSFAL--QEE-------QLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTA 133 (459)
T ss_pred -CceEEEe--cCC-------CCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEE
Confidence 0144432 211 26999999999988852 246899999998 4567899999999888888888887
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC--
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~-- 327 (498)
+.++ +..||.+.+|++|+|..|.|||...... ..++++++|+|+|++++|.+.++...+
T Consensus 134 ~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T PRK14355 134 RLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDN 194 (459)
T ss_pred EcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccc
Confidence 7655 4579999999889999999987421100 013678999999999987666665332
Q ss_pred -CCCchhhhhHHHHhhcC-ceEEEEEcce--EeecCCHHHHHHHHHHhhccC------CCccccCCCC-CCCCCCccCCC
Q 010874 328 -TSNDFGSEIIPAAIMEH-DVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPKT-PFYTSPRFLPP 396 (498)
Q Consensus 328 -~~~df~~dii~~~i~~~-~I~~~~~~~~--w~dIgt~~dy~~An~~ll~~~------~~~~~~~~~~-~i~~~~~i~~~ 396 (498)
..+.+++++++.+++++ ++++|.+++| |+|++||++|++|++.++... ....++++.. .+...+.++++
T Consensus 195 ~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~ 274 (459)
T PRK14355 195 AQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRD 274 (459)
T ss_pred cCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCC
Confidence 13355789999999874 7999999987 999999999999988666432 1112444443 35555666666
Q ss_pred eEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH--HHhhcCCcccEEeCC--
Q 010874 397 TKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPIGVGR-- 469 (498)
Q Consensus 397 ~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~--~s~l~~~~~~v~Ig~-- 469 (498)
+.|. +|.|. +++||++|+|+ +++|.+|+||++|+|+++|.|.+++++++..++..+.+ .+.++++ +.||+
T Consensus 275 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~ 351 (459)
T PRK14355 275 TTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAH---VKIGNFV 351 (459)
T ss_pred CEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCC---CEECCCc
Confidence 6663 46664 68899999998 88888999999999999999998888887666654333 2223333 23322
Q ss_pred ---------C------cEEeeeEECCCCEECCCcEEeCCCC
Q 010874 470 ---------N------TKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 470 ---------~------~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
+ ++|.+++|++++.||+++++.|.++
T Consensus 352 ~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~ 392 (459)
T PRK14355 352 ETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDG 392 (459)
T ss_pred cccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCC
Confidence 2 2334567778888888877766544
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.7e-43 Score=349.17 Aligned_cols=355 Identities=21% Similarity=0.276 Sum_probs=282.5
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
.+.+||||||.||||+ +.+||.|.||+|+ ||++|+++.+...+.++|.+|++|..+++.+.+.+. .
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-------~--- 67 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-------D--- 67 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-------c---
Confidence 5789999999999999 5899999999999 999999999999999999999999999998877521 0
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.++++ .|.. .+|||+|+.+++++|.+ ...+++||++||+ |.. ..|.++++.|.+.++.++++....
T Consensus 68 ~v~~v--~Q~e-------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~ 135 (460)
T COG1207 68 DVEFV--LQEE-------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL 135 (460)
T ss_pred CceEE--Eecc-------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEc
Confidence 12222 2332 27999999999999932 1345799999999 554 457889999999999999999988
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC---C
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~---~ 328 (498)
++ |..||.+..+++|+|..|.|....... +..-..+|+|+|+|+...|.++|..... .
T Consensus 136 ~d--P~GYGRIvr~~~g~V~~IVE~KDA~~e-----------------ek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaq 196 (460)
T COG1207 136 DD--PTGYGRIVRDGNGEVTAIVEEKDASEE-----------------EKQIKEINTGIYAFDGAALLRALPKLSNNNAQ 196 (460)
T ss_pred CC--CCCcceEEEcCCCcEEEEEEcCCCCHH-----------------HhcCcEEeeeEEEEcHHHHHHHHHHhcccccc
Confidence 87 789999999999999999885432211 1123679999999999988888876433 2
Q ss_pred CCchhhhhHHHHhhc-CceEEEEEcce--EeecCCHHHHHHHHHHhhccC-------------CCccccCCCCCCCCCCc
Q 010874 329 SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES-------------PAFHFYDPKTPFYTSPR 392 (498)
Q Consensus 329 ~~df~~dii~~~i~~-~~I~~~~~~~~--w~dIgt~~dy~~An~~ll~~~-------------~~~~~~~~~~~i~~~~~ 392 (498)
.+.|++|++..+..+ .+|.++..+++ ...+++-..+.+|++.|.++. |...+++.+..+...+.
T Consensus 197 gEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~Dvv 276 (460)
T COG1207 197 GEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVV 276 (460)
T ss_pred CcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceE
Confidence 567899999887755 67888888866 578999999999998876542 33334444455555566
Q ss_pred cCCCeEec-------------CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HH
Q 010874 393 FLPPTKID-------------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-AS 456 (498)
Q Consensus 393 i~~~~~i~-------------~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s 456 (498)
|.|++.+. +|.|+||.||+||.|. .+.|++|.||++|.||+.++|+ ++.+..+.+++.++|+ .+
T Consensus 277 I~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a 356 (460)
T COG1207 277 IEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKA 356 (460)
T ss_pred EecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecc
Confidence 66644442 2555677788888887 3788888888899999999886 4555556888889888 78
Q ss_pred hhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCCC
Q 010874 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDES 496 (498)
Q Consensus 457 ~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v 496 (498)
.+++| +++++-++|++|.||+++.||+|++.+|+||.
T Consensus 357 ~ig~g---sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~ 393 (460)
T COG1207 357 TIGKG---SKAGHLTYLGDAEIGENVNIGAGTITCNYDGK 393 (460)
T ss_pred cccCC---ccccceeeeccceecCCceeccceEEEcCCCc
Confidence 89999 89999999999999999999999999999996
No 14
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-43 Score=334.71 Aligned_cols=331 Identities=23% Similarity=0.353 Sum_probs=250.3
Q ss_pred ceEEEEEeCC--CCCcccCCccCCCccceecCCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 94 NVAAIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 94 ~m~aVILAaG--~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~-sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
+++||||.|| +|||||||+.+.||||+||+|+ |||+|.|+.|.+ +|..+|+++.-|..+.+.+++.+.- + .|
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~--~--e~ 76 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ--Q--EF 76 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH--h--hc
Confidence 5789999999 5999999999999999999999 999999999998 7999999999999888888886321 1 23
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
. -.|+++.++. ++|||+.|..+++.|- ....+.|+++++|+.+++++.+|++.|+..+..+|++...
T Consensus 77 ~-~pvrYL~E~~---------plGtaGgLyhFrdqIl---~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tk 143 (407)
T KOG1460|consen 77 K-VPVRYLREDN---------PLGTAGGLYHFRDQIL---AGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTK 143 (407)
T ss_pred c-cchhhhccCC---------CCCcccceeehhhHHh---cCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEE
Confidence 2 1255554433 4799999999987764 2356899999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEEC-CCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHH---hh-
Q 010874 251 VGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR---WR- 325 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d-~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~---~~- 325 (498)
+..+++++||.+..| .+|+|+++.|||.... ++++++|+|+|++++|..+-+ +.
T Consensus 144 vs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~~ 202 (407)
T KOG1460|consen 144 VSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQRQ 202 (407)
T ss_pred ecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHHH
Confidence 988889999999988 6899999999998753 589999999999999875422 11
Q ss_pred --------C----CCCCch---hhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCCCcc--ccCCCCCCC
Q 010874 326 --------Y----PTSNDF---GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFH--FYDPKTPFY 388 (498)
Q Consensus 326 --------~----~~~~df---~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~--~~~~~~~i~ 388 (498)
. +...|| .+|++..++..+++|+|..+++|..|.|+.+-+.||+.+|++..... ... + .-.
T Consensus 203 ~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~La-k-~pg 280 (407)
T KOG1460|consen 203 DLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLA-K-GPG 280 (407)
T ss_pred hhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhc-C-CCC
Confidence 0 112344 36899999999999999999999999999999999999998542211 000 0 000
Q ss_pred CCCccCCCeEecCeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeC
Q 010874 389 TSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (498)
Q Consensus 389 ~~~~i~~~~~i~~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig 468 (498)
+.+.|.++++|+. .+.+.+.+.|| -|..||.+++||+|++|.+|+|.++ +.|.
T Consensus 281 t~a~IigdVyIhP----sakvhptAkiG----PNVSIga~vrvg~GvRl~~sIIl~d-------------------~ei~ 333 (407)
T KOG1460|consen 281 TQAEIIGDVYIHP----SAKVHPTAKIG----PNVSIGANVRVGPGVRLRESIILDD-------------------AEIE 333 (407)
T ss_pred CCceEEeeeEEcC----cceeCCccccC----CCceecCCceecCCceeeeeeeccC-------------------cEee
Confidence 1112222222221 12233333333 1346677777777777777777777 7777
Q ss_pred CCcEEeeeEECCCCEECCCcEEeC
Q 010874 469 RNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 469 ~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
+|+.+-+||||.++.||.++.+.+
T Consensus 334 enavVl~sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 334 ENAVVLHSIIGWKSSIGRWARVEG 357 (407)
T ss_pred ccceEEeeeecccccccceeeecc
Confidence 777777777777777777766654
No 15
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-42 Score=354.49 Aligned_cols=359 Identities=18% Similarity=0.324 Sum_probs=257.4
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
...+|||+||..+-|||+|+|..+|++|+|++|. |||+|+|++|..+|+++|+|+|+-+..++++||.+.-|.....+-
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~ 100 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFI 100 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccce
Confidence 3558999999999999999999999999999999 999999999999999999999999999999999864344322221
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHH-----cCCCeEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITI 246 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~-----~~ad~tv 246 (498)
.+.+... . +...||++|.... ++...++|++++||++.+++|.++++.|++ +++.|||
T Consensus 101 --v~ti~s~-~---------~~S~GDamR~id~-----k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTm 163 (673)
T KOG1461|consen 101 --VVTICSG-E---------SRSVGDAMRDIDE-----KQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTM 163 (673)
T ss_pred --EEEEcCC-C---------cCcHHHHHHHHHh-----cceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEE
Confidence 1233321 1 3689999998742 344569999999999999999999999965 4677999
Q ss_pred EEEecCCCCCCCceEEEECC-CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHh-
Q 010874 247 SCAAVGESRASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW- 324 (498)
Q Consensus 247 ~~~~~~~~~~~~~g~v~~d~-~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~- 324 (498)
++.+.......+-.++.+|. +.|+++|.+-.. .....+++.++|--.+ .+..+.++.+++|-+|+++++..|-++
T Consensus 164 v~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~--~~~~~~l~~sl~d~~~-~v~vr~DL~dc~IdIcS~~V~sLF~dNF 240 (673)
T KOG1461|consen 164 VFKESSTRETTEQVVIAVDSRTSRLLHYQKCVR--EKHDIQLDLSLFDSND-EVEVRNDLLDCQIDICSPEVLSLFTDNF 240 (673)
T ss_pred EEeccccccCCcceEEEEcCCcceEEeehhhcc--cccccccCHHHhcCCC-cEEEEccCCCceeeEecHhHHHHhhhcc
Confidence 98877421113344566664 679999975211 1224677777774443 345688999999999999999866554
Q ss_pred hCCCCCchhhhhHHHHhhcCceEEEEEcc--eEeecCCHHHHHHHHHHhhccC-----CCccccCCCCCCCC--CCccCC
Q 010874 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANMALTKES-----PAFHFYDPKTPFYT--SPRFLP 395 (498)
Q Consensus 325 ~~~~~~df~~dii~~~i~~~~I~~~~~~~--~w~dIgt~~dy~~An~~ll~~~-----~~~~~~~~~~~i~~--~~~i~~ 395 (498)
.|+++.||..++|-.-+-+.+|+++.... |...+.++.+|...++++++|| |+..+.+....-+. +.+-++
T Consensus 241 Dyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~ 320 (673)
T KOG1461|consen 241 DYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSP 320 (673)
T ss_pred cceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCc
Confidence 45677899999998888899999999975 9999999999999999999997 33333331110000 001112
Q ss_pred CeEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcE
Q 010874 396 PTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 472 (498)
Q Consensus 396 ~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~ 472 (498)
.+.+. .|.+. +++||.++.|| ++.|.||+||.||+||.+|+|++|+||.+ |+||+||.
T Consensus 321 dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdnc~ 381 (673)
T KOG1461|consen 321 DVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDNCR 381 (673)
T ss_pred cceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCCce
Confidence 22221 23332 55666666666 56666666666666666666666666666 56666666
Q ss_pred EeeeEECCCCEECCCcEE
Q 010874 473 IRNCIIDKNVKIGKDVVI 490 (498)
Q Consensus 473 i~~~iI~~~~~Ig~~~~i 490 (498)
|++|+|+++|+|++|+++
T Consensus 382 I~~aii~d~v~i~~~~~l 399 (673)
T KOG1461|consen 382 IDHAIICDDVKIGEGAIL 399 (673)
T ss_pred EeeeEeecCcEeCCCccc
Confidence 666666666666655555
No 16
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3e-41 Score=361.97 Aligned_cols=357 Identities=19% Similarity=0.227 Sum_probs=256.5
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
+..+.|||||||.|+||+| .+||+|+|++|+ |||+|+|++|.++|+++++|++++..+++.+++.. + .
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~-~-------~ 69 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAE-L-------A 69 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhc-c-------C
Confidence 4567899999999999997 689999999999 99999999999999999999999988888777742 1 1
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-e-eecCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-L-YRMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l-~~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
..+.++. +. +..||+++++.++.++.+ ...++|+|++||+ + ...++.++++.|++.+++++++..
T Consensus 70 -~~~~~~~--~~-------~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~ 136 (482)
T PRK14352 70 -PEVDIAV--QD-------EQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTT 136 (482)
T ss_pred -CccEEEe--CC-------CCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 0133332 21 236999999999988742 1246799999998 3 456799999999988888888777
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC-
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~- 328 (498)
+.++ +..||.+..|++|+|.+|.|||.....+ ....++++|+|+|++++|..+++...+.
T Consensus 137 ~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~ 197 (482)
T PRK14352 137 TLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDN 197 (482)
T ss_pred ecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccc
Confidence 7665 5679998888889999999998743210 0124689999999999998776654332
Q ss_pred --CCchhhhhHHHHhhcC-ceEEEEEcceEeecCCHHHH------HHHHHHhhccC---------CCccccCCCCCCCCC
Q 010874 329 --SNDFGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSF------YEANMALTKES---------PAFHFYDPKTPFYTS 390 (498)
Q Consensus 329 --~~df~~dii~~~i~~~-~I~~~~~~~~w~dIgt~~dy------~~An~~ll~~~---------~~~~~~~~~~~i~~~ 390 (498)
.+.+++|+++.+++++ +|++|.+++||.|+++++.| ..+++.++..+ |...++++...+.++
T Consensus 198 ~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~ 277 (482)
T PRK14352 198 AQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRD 277 (482)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCC
Confidence 3456789999999874 79999999999999999888 55666555442 111122232333333
Q ss_pred CccCCCe------------Eec-CeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-H
Q 010874 391 PRFLPPT------------KID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-A 455 (498)
Q Consensus 391 ~~i~~~~------------~i~-~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~ 455 (498)
++|.|++ .|. ++.|.+++||++|.|+++.+.+++||+++.||+++.|. ++++..+..++.++++ .
T Consensus 278 ~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~ 357 (482)
T PRK14352 278 VVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKN 357 (482)
T ss_pred cEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcc
Confidence 3333332 221 34445566666666665566677777778888777775 5555555555555443 3
Q ss_pred HhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 456 s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
++++++ +.|++.+.+.+|+||+++.||+++++.|.++
T Consensus 358 ~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~ 394 (482)
T PRK14352 358 ATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDG 394 (482)
T ss_pred cEECCC---cEEccCceecccEECCCcEECCCcEEecccc
Confidence 445555 6677777777888888888888888877553
No 17
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.1e-41 Score=361.18 Aligned_cols=355 Identities=18% Similarity=0.242 Sum_probs=245.7
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
++|+|||||||.|+||+| .+||+|+|++|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.. .+
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~--------~~- 72 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG--------SG- 72 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc--------CC-
Confidence 468999999999999997 589999999999 99999999999999999999999988888777641 11
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
+.++... +..||+++++.++++++. ..++|++++||+ +...++.++++.|+++++++|+++.+
T Consensus 73 --i~~v~~~---------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~ 137 (481)
T PRK14358 73 --VAFARQE---------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGE 137 (481)
T ss_pred --cEEecCC---------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 4444321 236999999999887741 235799999998 44677999999999999999998888
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC---C
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~---~ 327 (498)
+++ ++.||++.+|++|+|..|.|||..+..+ ....++++|+|+|+++++ ++++... +
T Consensus 138 ~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~-~~~~~i~~~~~ 197 (481)
T PRK14358 138 LPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAP-ELARRIGNDNK 197 (481)
T ss_pred cCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHH-HHHHhcCCCcc
Confidence 775 5579999999889999999998643210 012468999999997653 2333321 2
Q ss_pred CCCchhhhhHHHHhhcC-ceEEEEEcceEeecCCHHHHHHHHHH-hhccCC-------CccccCCCCC-CCCCCccCCCe
Q 010874 328 TSNDFGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSFYEANMA-LTKESP-------AFHFYDPKTP-FYTSPRFLPPT 397 (498)
Q Consensus 328 ~~~df~~dii~~~i~~~-~I~~~~~~~~w~dIgt~~dy~~An~~-ll~~~~-------~~~~~~~~~~-i~~~~~i~~~~ 397 (498)
..+.+++|+++.+++++ ++++|.++++|..++.-.+|+.+++. ++++.. .....++... +...+.|++++
T Consensus 198 ~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~ 277 (481)
T PRK14358 198 AGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDV 277 (481)
T ss_pred CCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCC
Confidence 23445789999998875 69999999999999988888787765 443321 0111122111 12223333333
Q ss_pred Eec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH--HHhhcCCcc---------
Q 010874 398 KID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKV--------- 463 (498)
Q Consensus 398 ~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~--~s~l~~~~~--------- 463 (498)
.|. ++.|. ++.||++|.|+ +|.|++|+||++|.|+++++|.+++++++.+++..+.+ .+.++++..
T Consensus 278 ~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~ 357 (481)
T PRK14358 278 TIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKN 357 (481)
T ss_pred EEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECC
Confidence 332 23333 35566666666 56666666666666666666666666555555554433 233333300
Q ss_pred -----cEEeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 464 -----PIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 464 -----~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
.+.||+.+.+.+++||+|+.||.++++.|..+
T Consensus 358 ~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~ 394 (481)
T PRK14358 358 ARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDG 394 (481)
T ss_pred ceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCC
Confidence 03444445556788999999999998887643
No 18
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.2e-40 Score=353.07 Aligned_cols=350 Identities=17% Similarity=0.249 Sum_probs=250.3
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|+.|+|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|++++++..+++.+|+..
T Consensus 3 ~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~---------- 68 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD---------- 68 (456)
T ss_pred CCCceEEEEcCCCCCcCCC---CCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc----------
Confidence 5679999999999999983 699999999999 99999999999999999999999988888777641
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
..+.++.... ..||+++++.++.+++ ..++|++++||+ +.+.++.++++.|.+.+ +++++.
T Consensus 69 -~~~~~i~~~~---------~~Gt~~al~~a~~~l~-----~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~ 131 (456)
T PRK09451 69 -EPLNWVLQAE---------QLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTV 131 (456)
T ss_pred -CCcEEEECCC---------CCCcHHHHHHHHHhhc-----cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEE
Confidence 0134432211 2699999999988774 236899999998 55678999998886544 456666
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC--
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~-- 327 (498)
+.++ ++.||++.. ++|+|.+|.|||..... ....+++++|+|+|+++.|.++++...+
T Consensus 132 ~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~-----------------~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~ 191 (456)
T PRK09451 132 KLDN--PTGYGRITR-ENGKVVGIVEQKDATDE-----------------QRQIQEINTGILVANGADLKRWLAKLTNNN 191 (456)
T ss_pred EcCC--CCCceEEEe-cCCeEEEEEECCCCChH-----------------HhhccEEEEEEEEEEHHHHHHHHHhcCCcc
Confidence 6554 567999754 57899999999863211 0013578999999999999877765433
Q ss_pred -CCCchhhhhHHHHhhc-CceEEEE------Ecce--EeecCCHHHHHHHHH--Hhhcc-----CCCcc-----------
Q 010874 328 -TSNDFGSEIIPAAIME-HDVQAYI------FRDY--WEDIGTIKSFYEANM--ALTKE-----SPAFH----------- 379 (498)
Q Consensus 328 -~~~df~~dii~~~i~~-~~I~~~~------~~~~--w~dIgt~~dy~~An~--~ll~~-----~~~~~----------- 379 (498)
..+.+++|+++.++++ .++++|. ++|| |.|++++++|+++|+ .++.. .|...
T Consensus 192 ~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~ 271 (456)
T PRK09451 192 AQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRD 271 (456)
T ss_pred ccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCC
Confidence 2445678999999987 5899986 4566 788999999999985 23221 12111
Q ss_pred -ccCCCCCCCCCCccCCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-
Q 010874 380 -FYDPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI- 454 (498)
Q Consensus 380 -~~~~~~~i~~~~~i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~- 454 (498)
.+.+...+...+.+++++.|+ +|.|.+|+||++|+|+ ++.|++|+||++|.|++++.|. ++++.++..+++++++
T Consensus 272 ~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~ 351 (456)
T PRK09451 272 VEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMK 351 (456)
T ss_pred CEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeee
Confidence 111222222233344444442 3566677777777777 6777777777777777777775 6666666666666555
Q ss_pred HHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 455 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 455 ~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
.+.++++ +.+++.+.+++|.||+++.||+++++.|.++
T Consensus 352 ~~~i~~~---~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~ 389 (456)
T PRK09451 352 KARLGKG---SKAGHLTYLGDAEIGDNVNIGAGTITCNYDG 389 (456)
T ss_pred ceeeCCC---CccCccccccccEECCCCEEcCCeEEecccC
Confidence 4455566 5666666667788888888888888776544
No 19
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.3e-40 Score=346.00 Aligned_cols=342 Identities=19% Similarity=0.274 Sum_probs=256.2
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+++|||||||.||||+| .+||||+||+|+ |||+|+++.|..+ +++|.|+++++.+++.+|+.+.+ .
T Consensus 2 ~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~-------~-- 67 (430)
T PRK14359 2 KLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF-------P-- 67 (430)
T ss_pred CccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC-------C--
Confidence 57899999999999997 799999999999 9999999999986 79999999999999988886321 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCC
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (498)
.++++...+. ...||+++++.+. ...++||+++||..+. ..+.++.+.+.++++++.+.++++
T Consensus 68 ~v~~~~~~~~-------~~~gt~~al~~~~--------~~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~ 130 (430)
T PRK14359 68 GVIFHTQDLE-------NYPGTGGALMGIE--------PKHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLAD 130 (430)
T ss_pred ceEEEEecCc-------cCCCcHHHHhhcc--------cCCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCC
Confidence 2455432211 1369999998742 1247899999998432 234566666677888888888765
Q ss_pred CCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC---CCC
Q 010874 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSN 330 (498)
Q Consensus 254 ~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~---~~~ 330 (498)
+..||.+..+ +|+|..+.|||...... ...+..++|+|+|++++|.++++.... ..+
T Consensus 131 --~~~~g~v~~d-~g~v~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e 190 (430)
T PRK14359 131 --PKGYGRVVIE-NGQVKKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKE 190 (430)
T ss_pred --CccCcEEEEc-CCeEEEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCc
Confidence 4569988775 68999999987532100 013578999999999999877654221 133
Q ss_pred chhhhhHHHHhhc-CceEEEEEc-ceEeecCCHHHHHHHHHHhhccCC-C------------ccccCCCCCCCCCCccCC
Q 010874 331 DFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKESP-A------------FHFYDPKTPFYTSPRFLP 395 (498)
Q Consensus 331 df~~dii~~~i~~-~~I~~~~~~-~~w~dIgt~~dy~~An~~ll~~~~-~------------~~~~~~~~~i~~~~~i~~ 395 (498)
.+++++++.+++. .++.++.++ ++|.||+||+||+.|+..+..+.. . ..+..+...+...+.+++
T Consensus 191 ~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~ 270 (430)
T PRK14359 191 YYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEE 270 (430)
T ss_pred eehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECC
Confidence 4678889888876 679999987 689999999999999876654321 0 112233344444556666
Q ss_pred CeEec-CeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe
Q 010874 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474 (498)
Q Consensus 396 ~~~i~-~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~ 474 (498)
++.|+ ++.|++++||++|.|+++.|++|+||++|+|+++++|++|+|+++..+. .+++ ++ ++||++++|.
T Consensus 271 ~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~-----~~~~-~~---~~i~~~~~i~ 341 (430)
T PRK14359 271 GVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETK-----NAKL-NG---VKAGHLSYLG 341 (430)
T ss_pred CCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEc-----ccEe-cc---cccccccccc
Confidence 77773 5777899999999999888899999999999999999998887763222 2334 55 7888888888
Q ss_pred eeEECCCCEECCCcEEeCCCC
Q 010874 475 NCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
+|+||+++.||+++++.|.++
T Consensus 342 d~~Ig~~~~ig~~~~~~~~~~ 362 (430)
T PRK14359 342 DCEIDEGTNIGAGTITCNYDG 362 (430)
T ss_pred CCEECCCCEECCCceEccccC
Confidence 888888888888888877654
No 20
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=6.4e-40 Score=348.72 Aligned_cols=348 Identities=19% Similarity=0.252 Sum_probs=242.2
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|+|||||||.|+||+| .+||+|+|++|+ |||+|+++++.++|+++|+|++++..+.+.+|+.+ ++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~--------~~--- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN--------RD--- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC--------CC---
Confidence 7899999999999997 799999999999 99999999999999999999999998888777742 11
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+.++...+ ..||+++++.++.+++ ..++|++++||+ +...++.++++.|.+. .+++++.+.+
T Consensus 66 i~~~~~~~---------~~G~~~ai~~a~~~l~-----~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~ 129 (451)
T TIGR01173 66 VNWVLQAE---------QLGTGHAVLQALPFLP-----DDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP 129 (451)
T ss_pred cEEEEcCC---------CCchHHHHHHHHHhcC-----CCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC
Confidence 33332211 2599999999988874 236899999998 4456789999988664 3677776664
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC---C
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~---~ 329 (498)
+ +..|+.+..|++|+|..|.|||...... ...+.+++|+|+|++++|.++++...+. .
T Consensus 130 ~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~ 190 (451)
T TIGR01173 130 D--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQG 190 (451)
T ss_pred C--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccC
Confidence 3 5569999998889999999987532100 0125789999999999987766653321 2
Q ss_pred CchhhhhHHHHhhcC-ceEEEEEcce--EeecCCHHHHHHHHHHhhccCCC------cc-------ccCCC------CCC
Q 010874 330 NDFGSEIIPAAIMEH-DVQAYIFRDY--WEDIGTIKSFYEANMALTKESPA------FH-------FYDPK------TPF 387 (498)
Q Consensus 330 ~df~~dii~~~i~~~-~I~~~~~~~~--w~dIgt~~dy~~An~~ll~~~~~------~~-------~~~~~------~~i 387 (498)
+.+..++++.+++++ ++++|.+++| |.+++||++|.+++..+..+.+. .. ...+. ..+
T Consensus 191 e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i 270 (451)
T TIGR01173 191 EYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEI 270 (451)
T ss_pred cEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEE
Confidence 345678999988774 7999999988 99999999999987766532110 00 11111 122
Q ss_pred CCCCcc------CCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HHh
Q 010874 388 YTSPRF------LPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASL 457 (498)
Q Consensus 388 ~~~~~i------~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s~ 457 (498)
.+++.+ ++++.|+ +|.|.+++||++|+|+ +|.|.+++||++|.||++++|. ++++.++..++..+++ .+.
T Consensus 271 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ 350 (451)
T TIGR01173 271 DPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNAR 350 (451)
T ss_pred cCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcE
Confidence 222222 2222221 2444556666666666 5666666666666666666665 3555555555555444 234
Q ss_pred hcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 458 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 458 l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
++++ +.|++++.+.+|.||+++.||+++++.|.++
T Consensus 351 ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~ 385 (451)
T TIGR01173 351 IGKG---SKAGHLSYLGDAEIGSNVNIGAGTITCNYDG 385 (451)
T ss_pred ECCC---cEecceeeEeeeEEcCCcEECCCeEEeCccc
Confidence 5555 5566666666788888888888887776543
No 21
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.2e-40 Score=316.29 Aligned_cols=234 Identities=26% Similarity=0.433 Sum_probs=201.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|+|||||||.||||+|||...||+|+||.+| |||+|+|+.|..+||++|.|+++++..... +..+++|.+|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~----~~llGdgs~~g--- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTF----KELLGDGSDFG--- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhh----hhhhcCccccC---
Confidence 7899999999999999999999999999999 999999999999999999999998554332 22246777887
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
+.+.+..|+. +.|.|+|+.-+.+++. +++|+++.||.++..++.++++.+.+++++.++++.++++
T Consensus 73 v~itY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d- 138 (286)
T COG1209 73 VDITYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD- 138 (286)
T ss_pred cceEEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC-
Confidence 5666666754 4799999999998885 4899999999988779999999999888899999999997
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC-CCc-h
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SND-F 332 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~-~~d-f 332 (498)
|++||++.+|++|+|+.+.|||+.|. |+++-+|+|+|+++++. .++...|+ +.+ =
T Consensus 139 -P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGElE 195 (286)
T COG1209 139 -PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGELE 195 (286)
T ss_pred -cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCceE
Confidence 78899999999999999999999874 58999999999999996 55666665 222 2
Q ss_pred hhhhHHHHhhcCc-eEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 333 GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 333 ~~dii~~~i~~~~-I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
++|+++.+++++. +......|+|.|.||++||++|++.++.
T Consensus 196 ITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 196 ITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred ehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 6899999998865 5556667899999999999999999876
No 22
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.4e-39 Score=340.90 Aligned_cols=352 Identities=16% Similarity=0.204 Sum_probs=233.1
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
.+.|||||||.||||+ ..+||+|+|++|+ |||+|++++|...++++|+|++++..+.+.+++.. .
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~--------~--- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD--------E--- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc--------c---
Confidence 4789999999999997 4799999999999 99999999999999999999999988777655531 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-e-eecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-L-YRMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l-~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.++++...+ ..||+++++.+++++++ ...++|++++||+ + ...++.++++.|+ ++++++++.++
T Consensus 70 ~~~~v~~~~---------~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~ 135 (456)
T PRK14356 70 DARFVLQEQ---------QLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL 135 (456)
T ss_pred CceEEEcCC---------CCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc
Confidence 134443221 26999999999988863 1247899999998 3 3566889998875 66788888777
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC---C
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~---~ 328 (498)
++ +..||++.. ++|+|..|.|||..... .....+.++++|+|+|++++|..+++...+ .
T Consensus 136 ~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~---------------~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~ 197 (456)
T PRK14356 136 PD--PGAYGRVVR-RNGHVAAIVEAKDYDEA---------------LHGPETGEVNAGIYYLRLDAVESLLPRLTNANKS 197 (456)
T ss_pred CC--CCCceEEEE-cCCeEEEEEECCCCChH---------------HhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccC
Confidence 76 567998877 57899999998763210 000013678999999999998777654322 2
Q ss_pred CCchhhhhHHHHhhc-CceEEEEEcc--eEeecCCHHHHHHHHHHhhccCCC------ccccCC-CCCCCCCCccCCCeE
Q 010874 329 SNDFGSEIIPAAIME-HDVQAYIFRD--YWEDIGTIKSFYEANMALTKESPA------FHFYDP-KTPFYTSPRFLPPTK 398 (498)
Q Consensus 329 ~~df~~dii~~~i~~-~~I~~~~~~~--~w~dIgt~~dy~~An~~ll~~~~~------~~~~~~-~~~i~~~~~i~~~~~ 398 (498)
.+.+++++++.+++. .+++++.+.+ +|.+|+||++|.+|+..+..+... ..+.++ ...+...+++++++.
T Consensus 198 ~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~ 277 (456)
T PRK14356 198 GEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAE 277 (456)
T ss_pred CcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCE
Confidence 335678899888765 5799999866 579999999999998777654211 001111 111222233333333
Q ss_pred ec-------------------CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HH
Q 010874 399 ID-------------------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-AS 456 (498)
Q Consensus 399 i~-------------------~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s 456 (498)
|. +|.|.+++||+||.|+ +|.|.+++||++|.||++++|. ++++.++..++..+++ .+
T Consensus 278 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~ 357 (456)
T PRK14356 278 IYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKA 357 (456)
T ss_pred EeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeee
Confidence 32 2333344444444444 4444444455555555444443 3444444334444333 23
Q ss_pred hhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 457 ~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
++.++ +.|++++++.+|+||+++.||+++.+.+.++
T Consensus 358 ~i~~~---~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~ 393 (456)
T PRK14356 358 VLGKG---AKANHLTYLGDAEIGAGANIGAGTITCNYDG 393 (456)
T ss_pred EecCC---cEecccccccCeEECCCCEECCCceeecccc
Confidence 44444 4555555566777888888888877766554
No 23
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-38 Score=337.25 Aligned_cols=311 Identities=18% Similarity=0.217 Sum_probs=219.7
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|+++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+.+ + +
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~-------~ 70 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAK-I-------A 70 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhc-c-------C
Confidence 6678999999999999984 689999999999 99999999999999999999999998888877742 1 1
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
. .+.++. +. +..|++++++.++.+++. ..++|++++||+ ++ ..++..+++ |.+.++++++.+.
T Consensus 71 ~-~~~~~~--~~-------~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~~ 135 (446)
T PRK14353 71 P-DAEIFV--QK-------ERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLGF 135 (446)
T ss_pred C-CceEEE--cC-------CCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEEE
Confidence 0 122222 11 126999999999888751 247899999998 44 445777777 4456778888777
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC--
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~-- 327 (498)
+..+ +..||.+.. ++|+|..+.|||...... ....++++|+|+|+++.|.++++...+
T Consensus 136 ~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 195 (446)
T PRK14353 136 RAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGNDN 195 (446)
T ss_pred EeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcccC
Confidence 7654 567988877 578999999998642100 012578999999999888667665432
Q ss_pred -CCCchhhhhHHHHhhc-CceEEEEEc-ceEeecCCHHHHHHHHHHhhcc-------------CCCccccCCCCCCCCCC
Q 010874 328 -TSNDFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKE-------------SPAFHFYDPKTPFYTSP 391 (498)
Q Consensus 328 -~~~df~~dii~~~i~~-~~I~~~~~~-~~w~dIgt~~dy~~An~~ll~~-------------~~~~~~~~~~~~i~~~~ 391 (498)
..+.+++++++.+++. .+++++.++ ++|.||+||+||..|+..+..+ .|...++.+...|.+++
T Consensus 196 ~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 275 (446)
T PRK14353 196 AKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDV 275 (446)
T ss_pred CCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCC
Confidence 1234567889888876 469999986 5799999999999998644322 01111223333333333
Q ss_pred ccCCCeEec-------------CeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCcccc
Q 010874 392 RFLPPTKID-------------NCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQ 449 (498)
Q Consensus 392 ~i~~~~~i~-------------~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~ 449 (498)
++++++.|. .+.|.+++||++|+|+ ++.|. +|+||++|.||++|.|.+++++++..+.
T Consensus 276 ~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~ 348 (446)
T PRK14353 276 VIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVN 348 (446)
T ss_pred EECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEEC
Confidence 333333332 1333457777777777 67775 7788888888888777777776654433
No 24
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=5.5e-39 Score=322.46 Aligned_cols=243 Identities=17% Similarity=0.258 Sum_probs=192.6
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-c------
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-F------ 164 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~------ 164 (498)
|.+|+|||||||.||||+|+|..+||||+||+|+ |+|+|+|++|.++|+++|+|+++|+.+++.+|+...+ +
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 5689999999999999999999999999999999 9999999999999999999999999999999985422 1
Q ss_pred ----------CCCCcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee-------
Q 010874 165 ----------GNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (498)
Q Consensus 165 ----------~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~------- 227 (498)
..+..++ +.+....|. +++|||+||+++.++++ .++|+|++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~i~~~~q~-------~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPG---VTIMNVRQA-------QPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCC---ceEEEeeCC-------CcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 0011122 233333332 35899999999998885 36899999999987
Q ss_pred -cCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEEC----CCCC---EEEEEeCCCccccccccccccccCCCcccc
Q 010874 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMGR---IAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (498)
Q Consensus 228 -~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d----~~gr---V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~ 299 (498)
+++.++++.|.++++.++ ++.++.+ .++.||++.+| ++|+ |..|.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~~-~~~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQV-LAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcEE-EEEEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 589999999987777664 4444432 26789999984 4564 5899999964321
Q ss_pred ccCCcceeeeEEEEcHHHHHHHHHhhCCC--CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 300 ~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
..++++++|+|+|++++|.. ++...+. .+..++++++.+++++++++|.++|+|+|||+|++|.+||.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~-l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWAE-LERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHHH-HhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 02478999999999999874 4543222 23346799999999999999999999999999999999999873
No 25
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=4.9e-39 Score=314.86 Aligned_cols=241 Identities=34% Similarity=0.586 Sum_probs=194.1
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeE-EEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI-FVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I-~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
+|||||||.||||+|||.++||||+|++|+||||+|+|++|.++|+++| +|+++++.+++.+|+.+.+ +++ -.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~-----~~~-~~ 74 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY-----KFG-VK 74 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG-----GGT-EE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc-----ccc-cc
Confidence 6999999999999999999999999999999999999999999999995 5555588888988886432 222 12
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
+.++. |.. ..|||+||+++..++++. ...++|+|++||++++.++.++++.|+++++++++++...+.+
T Consensus 75 i~~i~--~~~-------~~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 143 (248)
T PF00483_consen 75 IEYIV--QPE-------PLGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVE 143 (248)
T ss_dssp EEEEE--ESS-------SSCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESS
T ss_pred ceeee--ccc-------ccchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhcccccccccccccccc
Confidence 44443 322 159999999999988631 0023599999999999999999999999998554444444444
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHH--hhCCCCCch
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDF 332 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~--~~~~~~~df 332 (498)
.++.||++.+|++|+|.+|.|||..+.. +.++++|+|+|++++|..+++ .......++
T Consensus 144 ~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~ 203 (248)
T PF00483_consen 144 DPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDF 203 (248)
T ss_dssp GGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHH
T ss_pred ccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhH
Confidence 4788999999999999999999986531 368999999999999987755 223346678
Q ss_pred hhhhHHHHhhcCc-eEEEEEcc--eEeecCCHHHHHHHHHHhhc
Q 010874 333 GSEIIPAAIMEHD-VQAYIFRD--YWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 333 ~~dii~~~i~~~~-I~~~~~~~--~w~dIgt~~dy~~An~~ll~ 373 (498)
+.++++.+++++. +.++.+++ +|.|||||++|++||+.+++
T Consensus 204 l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 204 LTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 8999999998874 56778888 79999999999999999985
No 26
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.8e-38 Score=336.97 Aligned_cols=352 Identities=22% Similarity=0.306 Sum_probs=248.2
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
+.++|||||||.|+||++ .+||+|+||+|+ |||+|+|++|.++|+++++|+++++.+++.+|+.. +
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~----- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----R----- 66 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----C-----
Confidence 357899999999999984 799999999999 99999999999999999999999998888777641 1
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
+.++.... ..||++++++++.++++ ..+.|+++.||. +...++.++++.|.+.+++.|+++.+
T Consensus 67 --~~~~~~~~---------~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~ 131 (458)
T PRK14354 67 --SEFALQEE---------QLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAI 131 (458)
T ss_pred --cEEEEcCC---------CCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEE
Confidence 22222111 26999999999988852 136799999997 44667899999998888888888777
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC--
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-- 328 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~-- 328 (498)
.++ +..|+.+..|++++|..+.|||..... ....+++++|+|+|+++.|.+.++.....
T Consensus 132 ~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~ 192 (458)
T PRK14354 132 AEN--PTGYGRIIRNENGEVEKIVEQKDATEE-----------------EKQIKEINTGTYCFDNKALFEALKKISNDNA 192 (458)
T ss_pred cCC--CCCceEEEEcCCCCEEEEEECCCCChH-----------------HhcCcEEEEEEEEEEHHHHHHHHHHhCcccc
Confidence 654 456898888888999999998752100 00135789999999998776666543321
Q ss_pred -CCchhhhhHHHHhhc-CceEEEEEcce--EeecCCHHHHHHHHHHhhccC------CCccccCCC-------CCCCCCC
Q 010874 329 -SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPK-------TPFYTSP 391 (498)
Q Consensus 329 -~~df~~dii~~~i~~-~~I~~~~~~~~--w~dIgt~~dy~~An~~ll~~~------~~~~~~~~~-------~~i~~~~ 391 (498)
.+.+.+++++.+++. .++++|.++++ |+++++++||..|+..+..+. +...++++. ..+..++
T Consensus 193 ~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~ 272 (458)
T PRK14354 193 QGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDT 272 (458)
T ss_pred CCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCC
Confidence 233467888888866 57999999876 567779999999987553221 122233332 2233333
Q ss_pred ccCCCe------------Ee-cCeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HH
Q 010874 392 RFLPPT------------KI-DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-AS 456 (498)
Q Consensus 392 ~i~~~~------------~i-~~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s 456 (498)
.+.+++ .| .++.|.+++||++|.|+++.+.+|+||++|+||++|.|. +++|.++..+..++++ .+
T Consensus 273 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~ 352 (458)
T PRK14354 273 VIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKS 352 (458)
T ss_pred EEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeee
Confidence 333222 22 124444566666776665666677777777777777776 6666666555555554 34
Q ss_pred hhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 457 ~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
.++++ +.|++.+.+++++||+++.||+++.+.|.++
T Consensus 353 ~i~~~---~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~ 388 (458)
T PRK14354 353 TIGEG---TKVSHLTYIGDAEVGENVNIGCGTITVNYDG 388 (458)
T ss_pred EECCC---CEecceeeecCcccCCceEEcCceeeccccc
Confidence 44555 5566666667778888888888887776543
No 27
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-39 Score=318.17 Aligned_cols=359 Identities=19% Similarity=0.285 Sum_probs=255.2
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccC-chhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~-~~~l~~hl~~~~~~~~~~~ 170 (498)
|.+|||||+|||.||||--+|...||+||||||+ |||+|+|.+|.++|+++|.|++... ...|...|...+ .. +.
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~-~l--~~ 82 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI-DL--KK 82 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC-cc--cc
Confidence 7889999999999999999999999999999999 9999999999999999999999763 334544453322 11 11
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
....|++-...+. -.||+++||.....+. .++||+++||.++++++..+++++|..++...+++..
T Consensus 83 ~~~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~ 148 (433)
T KOG1462|consen 83 RPDYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGN 148 (433)
T ss_pred cccEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhcc
Confidence 1112333322221 1699999999988774 3799999999999999999999999877765554443
Q ss_pred cCC---------CCCCCceEEEECCC-CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHH
Q 010874 251 VGE---------SRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (498)
Q Consensus 251 ~~~---------~~~~~~g~v~~d~~-grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ 320 (498)
... +....+.++.++++ +|+.... ... .....+++..++|...|+. ...+.+.++++|+|+.+++..
T Consensus 149 ~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~-~~~-d~~~~l~i~~slL~~~prl-tl~t~L~dahiY~~k~~v~d~ 225 (433)
T KOG1462|consen 149 ALSEVPIPGQKGKKKQARDVIGINEDTERLAYSS-DSA-DEEEPLVIRKSLLWNHPRL-TLTTKLVDAHIYVFKHWVIDL 225 (433)
T ss_pred ccccccccCcccccccccceeeeccccceeEEee-cCC-cCCCceehhhhhhhcCCce-EEeccccceeeeeeHHHHHHH
Confidence 221 11123456666654 4544332 221 1223466777777767764 346789999999999999975
Q ss_pred HHHhhCCCCCchhhhhHHHHhhc---------------------------------CceEEEEEc--ceEeecCCHHHHH
Q 010874 321 LLRWRYPTSNDFGSEIIPAAIME---------------------------------HDVQAYIFR--DYWEDIGTIKSFY 365 (498)
Q Consensus 321 ll~~~~~~~~df~~dii~~~i~~---------------------------------~~I~~~~~~--~~w~dIgt~~dy~ 365 (498)
+-+. ++...|-.+++|.++++ -++++|... ..+..++|.-.|+
T Consensus 226 l~~~--~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~ 303 (433)
T KOG1462|consen 226 LSEK--ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYM 303 (433)
T ss_pred HhcC--CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHH
Confidence 5332 22233344445544432 234555543 3577899999999
Q ss_pred HHH--HHhhccCCCcc----ccCCCCCCCCCCccCCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEE
Q 010874 366 EAN--MALTKESPAFH----FYDPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVEL 437 (498)
Q Consensus 366 ~An--~~ll~~~~~~~----~~~~~~~i~~~~~i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i 437 (498)
++| +.+..-.+... +....+-+.....+++.++|+ ++.|+.|+||.||.|| +++|.+|+|+++++||+||.|
T Consensus 304 eiN~~k~~~~l~~e~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I 383 (433)
T KOG1462|consen 304 EINRDKKLKKLCSEAKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNI 383 (433)
T ss_pred hhhHHHHHHHhccccccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcce
Confidence 999 44443222211 111223445567788888885 7888899999999999 889999999999999999999
Q ss_pred cceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 438 KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 438 ~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
++|||+.+ +.||++++++||+||++-+|.+..+..|
T Consensus 384 ensIIg~g-------------------A~Ig~gs~L~nC~Ig~~yvVeak~~~~~ 419 (433)
T KOG1462|consen 384 ENSIIGMG-------------------AQIGSGSKLKNCIIGPGYVVEAKGKHGG 419 (433)
T ss_pred ecceeccc-------------------ceecCCCeeeeeEecCCcEEcccccccc
Confidence 99999888 8999999999999999999986555443
No 28
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=2.3e-38 Score=318.47 Aligned_cols=245 Identities=18% Similarity=0.269 Sum_probs=195.6
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cC-----
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG----- 165 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~----- 165 (498)
|++|+|||||||.||||+|||..+||||+||+|+ |+|+|+|++|.++||++|+|+++++.+++.+|+...| +.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 6789999999999999999999999999999999 9999999999999999999999999999999996432 10
Q ss_pred -----------CCCcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee-------
Q 010874 166 -----------NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (498)
Q Consensus 166 -----------~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~------- 227 (498)
....++ +++....|.. ++|||+|++++++++. .++|+|++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000111 2333333432 3799999999998884 36799999999886
Q ss_pred -cCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEEC----CCC---CEEEEEeCCCccccccccccccccCCCcccc
Q 010874 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (498)
Q Consensus 228 -~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d----~~g---rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~ 299 (498)
.|+.++++.|.+.++++++ +....+ .++.||++.+| ++| +|..|.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~~-~~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQVL-AKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEEE-EEECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 5899999999888877544 444332 46789999996 355 78999999974321
Q ss_pred ccCCcceeeeEEEEcHHHHHHHHHhhCCC--CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHh-hcc
Q 010874 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL-TKE 374 (498)
Q Consensus 300 ~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~l-l~~ 374 (498)
..++++++|+|+|++++|..+.+ ..+. .+.+++++++.+++++++.+|.++|+|+|||+|++|.+|+.++ ++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l~~-~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPELER-TEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHHHh-CCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 02468999999999999876643 2222 3345789999999999999999999999999999999999998 543
No 29
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.8e-38 Score=333.70 Aligned_cols=340 Identities=20% Similarity=0.248 Sum_probs=226.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|+|||||||.||||++ .+||+|+|++|+ |||+|+|++|.+.+ ++|+|++++..+.+.+|+.. +
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-----~------- 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-----W------- 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-----c-------
Confidence 7899999999999985 799999999999 99999999999875 89999999988877766631 1
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+.++. +.. .+||+++++.++.+++ ..++|++++||+ +.+.++.++++.|+++++++|+++.+.+
T Consensus 64 ~~~~~--~~~-------~~g~~~ai~~a~~~l~-----~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~ 129 (448)
T PRK14357 64 VKIFL--QEE-------QLGTAHAVMCARDFIE-----PGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE 129 (448)
T ss_pred cEEEe--cCC-------CCChHHHHHHHHHhcC-----cCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC
Confidence 23332 211 2699999999998874 247899999997 5677899999999998999999998877
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC---C
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~---~ 329 (498)
+ +..||.+..| +|+| .+.|||..+... ...+++++|+|+|++++|.++++...+. .
T Consensus 130 ~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~ 188 (448)
T PRK14357 130 D--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKG 188 (448)
T ss_pred C--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCC
Confidence 5 5679998887 6788 888876532100 0125789999999999987776643322 2
Q ss_pred CchhhhhHHHHhhcCceEEEEEcce--EeecCCHHHHHHHHHHhhcc----C--CCcc-------ccCCCCCCCCCCccC
Q 010874 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKE----S--PAFH-------FYDPKTPFYTSPRFL 394 (498)
Q Consensus 330 ~df~~dii~~~i~~~~I~~~~~~~~--w~dIgt~~dy~~An~~ll~~----~--~~~~-------~~~~~~~i~~~~~i~ 394 (498)
..++.|+++.+ .++++|.+.+| |.+++++++|..+...+... . +... ++++...+..++.+.
T Consensus 189 ~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~ 265 (448)
T PRK14357 189 EYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIY 265 (448)
T ss_pred eEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEc
Confidence 23456777766 34888999898 66777999998877655321 0 1112 223333333444443
Q ss_pred CCeEec-------------CeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HHhhc
Q 010874 395 PPTKID-------------NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLA 459 (498)
Q Consensus 395 ~~~~i~-------------~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s~l~ 459 (498)
|++.|. ++.|.+|+||+||+|..+.+.+|+||+++.|+++++|. ++++.++..++..+++ .+.++
T Consensus 266 ~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig 345 (448)
T PRK14357 266 PMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIG 345 (448)
T ss_pred CCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEc
Confidence 333331 13333455555555554555666666666667777664 3555555555544433 22333
Q ss_pred CCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 460 ~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
++ +.+++.+.+++++||+++.||+++++.+
T Consensus 346 ~~---~~~~~~~~~~~~~Ig~~~~ig~~~~~~~ 375 (448)
T PRK14357 346 EN---TKAQHLTYLGDATVGKNVNIGAGTITCN 375 (448)
T ss_pred CC---cCccccccccCcEECCCcEECCCccccc
Confidence 33 2333333444455555555555555443
No 30
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=6.1e-38 Score=309.67 Aligned_cols=235 Identities=22% Similarity=0.370 Sum_probs=193.7
Q ss_pred EEEEeCC--CCCcccCCccCCCccceecCCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 97 AIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 97 aVILAaG--~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~-sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
||||||| .||||+|||..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.... ..++ .
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~----~~~~-~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ----QEFN-V 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc----cccC-c
Confidence 6999999 8999999999999999999999 999999999999 6999999999999999999996321 1122 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCC
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (498)
.+.++ .|.. .+||++|++.++++++. ...++|+|++||++++.|+.++++.|+++++++|+++.+++.
T Consensus 75 ~i~~~--~~~~-------~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~ 142 (257)
T cd06428 75 PIRYL--QEYK-------PLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASR 142 (257)
T ss_pred eEEEe--cCCc-------cCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccc
Confidence 23332 2221 26999999999988852 124689999999999999999999999999999999988754
Q ss_pred CCCCCceEEEEC-CCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC-----
Q 010874 254 SRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP----- 327 (498)
Q Consensus 254 ~~~~~~g~v~~d-~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~----- 327 (498)
+.++.||++.+| ++|+|..|.|||..+. +.++++|+|+|++++|..+ ....+
T Consensus 143 ~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~e 200 (257)
T cd06428 143 EQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQE 200 (257)
T ss_pred cccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhccccccc
Confidence 456789999998 6789999999987432 3689999999999998654 32211
Q ss_pred -------------CCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHh
Q 010874 328 -------------TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 328 -------------~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~l 371 (498)
...++.+++++.+++++++++|.++|||.||||+++|++||+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 201 AQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 11245579999999999999999999999999999999999864
No 31
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=1.6e-37 Score=302.10 Aligned_cols=232 Identities=26% Similarity=0.426 Sum_probs=195.6
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|++||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+. .+ . .+++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~-~~-~--~~~~--- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLK-EY-E--KKLG--- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHh-cc-c--ccCC---
Confidence 7899999999999999999999999999999 9999999999999999999999999999999986 22 1 1222
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
++++...+.. ..||+++++.+..+++. ..++|+|++||++++.++.++++.|+++++++|+++.+.++
T Consensus 73 ~~i~~~~~~~-------~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (233)
T cd06425 73 IKITFSIETE-------PLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED- 140 (233)
T ss_pred eEEEeccCCC-------CCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC-
Confidence 4444432221 36999999999988851 23679999999999999999999999999999999988765
Q ss_pred CCCCceEEEECC-CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchh
Q 010874 255 RASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (498)
Q Consensus 255 ~~~~~g~v~~d~-~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~ 333 (498)
++.||++.+|+ +|+|+.+.|||..+. ++++++|+|+|++++|..+.. ...++.
T Consensus 141 -~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l~~----~~~~~~ 194 (233)
T cd06425 141 -PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRIPL----RPTSIE 194 (233)
T ss_pred -ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhccc----Ccccch
Confidence 56799999987 789999999987532 367899999999999975432 223345
Q ss_pred hhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 334 ~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
.++++.+++++++.+|.+++||.|||||++|++|++.+|
T Consensus 195 ~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 195 KEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 688999999999999999999999999999999998765
No 32
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.7e-37 Score=324.81 Aligned_cols=348 Identities=20% Similarity=0.264 Sum_probs=248.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|.+||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|+.+++|++++..+++.+|+.+ ++ .
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~--------~~--~ 67 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAH--------LP--G 67 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcc--------cC--C
Confidence 6799999999999985 789999999999 99999999999999999999999988888777742 11 2
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+.++.... ..|++++++.++.++++ ..++++|++||. +...++.++++.|++.++++++++.+.+
T Consensus 68 i~~v~~~~---------~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 134 (450)
T PRK14360 68 LEFVEQQP---------QLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP 134 (450)
T ss_pred eEEEEeCC---------cCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 45543211 36999999999888752 236799999998 5567899999999998888888777766
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC---C
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~---~ 329 (498)
+ +..||.+.+|++|+|..|.|||..... ...++++++|+|+|+++.|.++++...+. .
T Consensus 135 ~--~~~~g~~~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~ 195 (450)
T PRK14360 135 N--PKGYGRVFCDGNNLVEQIVEDRDCTPA-----------------QRQNNRINAGIYCFNWPALAEVLPKLSSNNDQK 195 (450)
T ss_pred C--CCCccEEEECCCCCEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHhhccccccCC
Confidence 5 556999999989999999999863210 00236899999999999998877654332 3
Q ss_pred CchhhhhHHHHhhcCceEEEEEcce--EeecCCHHHHHHHHHHhhcc----C--CCccccCCC-------------C---
Q 010874 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKE----S--PAFHFYDPK-------------T--- 385 (498)
Q Consensus 330 ~df~~dii~~~i~~~~I~~~~~~~~--w~dIgt~~dy~~An~~ll~~----~--~~~~~~~~~-------------~--- 385 (498)
+.+++++++.+. ++.++.+.++ |..+++++++..+...+... + +...++++. .
T Consensus 196 e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~ 272 (450)
T PRK14360 196 EYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIE 272 (450)
T ss_pred ceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEEC
Confidence 345677777663 3566667766 45699999999987765331 1 111122221 1
Q ss_pred ---CCCCCCccCCCeEe-cCeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HHhhc
Q 010874 386 ---PFYTSPRFLPPTKI-DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLA 459 (498)
Q Consensus 386 ---~i~~~~~i~~~~~i-~~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s~l~ 459 (498)
.+...+.+++++.| .++.|.+++|+++|+|+.+.+.+|+||++|+|+++|+|. +++|.++..++..+.+ .+.++
T Consensus 273 ~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~ 352 (450)
T PRK14360 273 PQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLG 352 (450)
T ss_pred CCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccC
Confidence 22222333444444 245566777888888876677788888888889888886 6777777666666554 44555
Q ss_pred CCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 010874 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (498)
Q Consensus 460 ~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~ 494 (498)
++ +.|++++++.+++|++++.||+++++.+.+
T Consensus 353 ~~---~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~ 384 (450)
T PRK14360 353 EG---SKVNHLSYIGDATLGEQVNIGAGTITANYD 384 (450)
T ss_pred CC---cEeccceecCCceecCCcEECccceecccc
Confidence 55 455555555666666666666666665543
No 33
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=1.3e-36 Score=304.48 Aligned_cols=235 Identities=23% Similarity=0.399 Sum_probs=189.9
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEec-cCchhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~-~~~~~l~~hl~~~~~~~~~~~ 170 (498)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++. +..+++.+|+. ++..|
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~-----~g~~~ 74 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG-----DGSQW 74 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHc-----Ccccc
Confidence 6789999999999999999999999999999999 99999999999999999998765 44566777764 33345
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-eecCHHHHHHHHHHcCCCeEEEEE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l-~~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
+. .+.+. .|.. +.||++|+..+.+++. .+++++++||++ ++.|+.++++.|.+.++++|+++.
T Consensus 75 g~-~i~y~--~q~~-------~~Gta~Al~~a~~~i~------~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~ 138 (292)
T PRK15480 75 GL-NLQYK--VQPS-------PDGLAQAFIIGEEFIG------GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAY 138 (292)
T ss_pred Cc-eeEEE--ECCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEE
Confidence 42 23333 3322 3699999999998884 256888999975 488999999999888889999888
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC-
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~- 328 (498)
++++ +++||++.+|++|+|+.|.|||..+. ++++++|+|+|+++++.. ++...++
T Consensus 139 ~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~-~~~~~~~~ 194 (292)
T PRK15480 139 HVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEM-AKNLKPSA 194 (292)
T ss_pred EcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHHH-HhhcCCCC
Confidence 8865 67899999998899999999997542 478999999999998864 4443332
Q ss_pred -CCchhhhhHHHHhhcCceEE-EEEcc-eEeecCCHHHHHHHHHHhh
Q 010874 329 -SNDFGSEIIPAAIMEHDVQA-YIFRD-YWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 329 -~~df~~dii~~~i~~~~I~~-~~~~~-~w~dIgt~~dy~~An~~ll 372 (498)
.+-.++++++.+++++++.. +...+ +|.|+||+++|.+|+..+.
T Consensus 195 ~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 195 RGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 22235789999998887754 45567 4999999999999999875
No 34
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=2.8e-36 Score=294.68 Aligned_cols=231 Identities=23% Similarity=0.386 Sum_probs=188.8
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccC-chhHHHHHHhhccCCCCcCCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~-~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++ .+++.+|+.. +..|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-----~~~~~-- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-----GSDLG-- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-----ccccC--
Confidence 6899999999999999999999999999999 9999999999999999999998754 4778778752 22333
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-ecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+++....+.. ..||++|++.++.+++ .++|+|++||+++ +.++.++++.|.+.++++|+++.+++
T Consensus 73 -~~i~~~~~~~-------~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
T cd02538 73 -IRITYAVQPK-------PGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN 138 (240)
T ss_pred -ceEEEeeCCC-------CCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3333333321 2699999999988874 3679999999755 66899999999988899999888876
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC--CC
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~ 330 (498)
+ ++.||++.+|++|+|..|.|||..+. +.++++|+|+|++++|. .++...+. .+
T Consensus 139 ~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~ 194 (240)
T cd02538 139 D--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGE 194 (240)
T ss_pred c--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCe
Confidence 5 56799999998899999999986532 35789999999999885 55543222 22
Q ss_pred chhhhhHHHHhhcCceEEEEEc--ceEeecCCHHHHHHHHHHh
Q 010874 331 DFGSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 331 df~~dii~~~i~~~~I~~~~~~--~~w~dIgt~~dy~~An~~l 371 (498)
.+.+++++.+++++++.++.++ +||.|||||++|++||+.+
T Consensus 195 ~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 195 LEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred EEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 3457999999998888888877 9999999999999999865
No 35
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=4.8e-36 Score=299.94 Aligned_cols=231 Identities=26% Similarity=0.447 Sum_probs=188.9
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEec-cCchhHHHHHHhhccCCCCcCCCCe
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~-~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|+++ ++.+++.+|+. ++..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg-----~g~~~g--- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG-----DGSQWG--- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhc-----cccccC---
Confidence 589999999999999999999999999999 99999999999999999998875 55567766664 334454
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-eecCHHHHHHHHHHcCCCeEEEEEecCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGE 253 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l-~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (498)
+++.+..|.. +.||++|++.+.++++ .++|+++.||++ ++.++.++++.|.+.++++|+++.++++
T Consensus 72 ~~i~~~~q~~-------~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~ 138 (286)
T TIGR01207 72 VNLSYAVQPS-------PDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD 138 (286)
T ss_pred ceEEEEEccC-------CCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC
Confidence 3444434432 3799999999998885 367889999975 5889999999999888899999988875
Q ss_pred CCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC--CCc
Q 010874 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SND 331 (498)
Q Consensus 254 ~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~d 331 (498)
+++||++.+|++|+|++|.|||..+. ++++++|+|+|+++++. +++...++ .+-
T Consensus 139 --p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~ 194 (286)
T TIGR01207 139 --PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGEL 194 (286)
T ss_pred --HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcE
Confidence 57899999998999999999997542 46899999999999875 45543332 223
Q ss_pred hhhhhHHHHhhcCceEEEEE-cce-EeecCCHHHHHHHHHHhh
Q 010874 332 FGSEIIPAAIMEHDVQAYIF-RDY-WEDIGTIKSFYEANMALT 372 (498)
Q Consensus 332 f~~dii~~~i~~~~I~~~~~-~~~-w~dIgt~~dy~~An~~ll 372 (498)
+++++++.+++++++.++.+ .++ |.|+|||++|++|+..+-
T Consensus 195 eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 195 EITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred eHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 46799999999887766666 576 999999999999998774
No 36
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=7.1e-36 Score=296.41 Aligned_cols=244 Identities=22% Similarity=0.299 Sum_probs=190.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cC-----CCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 168 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~-----~~~ 168 (498)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...+ +. .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999999 9999999999999999999999999999999996432 11 000
Q ss_pred cC-------CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeec---CHHHHHHHHH
Q 010874 169 NF-------GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHV 238 (498)
Q Consensus 169 ~~-------~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~---dl~~ll~~h~ 238 (498)
.+ -...+++....|. +.+||++|++.+..+++ .++|+|++||+++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~-------~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQK-------EPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIEAYE 146 (267)
T ss_pred HHHhhhhhcccCCceEEEEEcC-------CCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHHHHH
Confidence 00 0001222222221 24799999999998874 278999999998764 4999999998
Q ss_pred HcCCCeEEEEEecCCCCCCCceEEEECC----CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEc
Q 010874 239 DRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (498)
Q Consensus 239 ~~~ad~tv~~~~~~~~~~~~~g~v~~d~----~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~ 314 (498)
+.+++ ++++.+++.+.+..||++.+|+ .++|..|.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (267)
T cd02541 147 KTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (267)
T ss_pred HhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcC
Confidence 87776 4556666544567899999985 2589999999863211 1368899999999
Q ss_pred HHHHHHHHHhhC-CCCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 315 KDVLFKLLRWRY-PTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 315 ~~vL~~ll~~~~-~~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
+++|..+.+... ...+.+..++++.++++++|++|.++|||.|||||++|++||+++.
T Consensus 207 ~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 207 PDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 999876533111 1233456799999999899999999999999999999999999874
No 37
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=1.6e-35 Score=292.10 Aligned_cols=233 Identities=18% Similarity=0.288 Sum_probs=189.7
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcCC--C
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFG--D 172 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~~--~ 172 (498)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++|+.+++.+|+.+.. .+.+.++. .
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 9999999999999999999999999999999986311 11111110 0
Q ss_pred ------------CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHc
Q 010874 173 ------------GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240 (498)
Q Consensus 173 ------------~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~ 240 (498)
..+++.. |. ..+||++|+++++.++. .++|+|++||++++.|+.++++.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~-------~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVD--TG-------ESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeeee--cC-------CcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0111111 11 13799999999988874 378999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHH
Q 010874 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (498)
Q Consensus 241 ~ad~tv~~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ 320 (498)
++++|+++.+ + +..||.+.+|+ ++|..|.|||... +.++++|+|+|++++|.
T Consensus 145 ~~d~tl~~~~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 145 GKKATVTAVQ--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD- 196 (254)
T ss_pred CCCEEEEEec--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-
Confidence 9999987652 2 46799999985 6999999998542 25789999999999984
Q ss_pred HHHhhCCCCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccC
Q 010874 321 LLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (498)
Q Consensus 321 ll~~~~~~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~ 375 (498)
+++. ...++.+++++.+++++++++|.++|||.|||||++|.+|+..+....
T Consensus 197 ~l~~---~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDG---DATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hccc---cCchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 5543 233677899999999999999999999999999999999999887643
No 38
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=1.1e-35 Score=293.70 Aligned_cols=238 Identities=21% Similarity=0.301 Sum_probs=186.9
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cC-----CCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 168 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~-----~~~ 168 (498)
|+|||||||.||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+...+ +. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999999 9999999999999999999999999999999996432 11 000
Q ss_pred c--------CCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeec---CHHHHHHHH
Q 010874 169 N--------FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSH 237 (498)
Q Consensus 169 ~--------~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~---dl~~ll~~h 237 (498)
. +. ..+.+....|. +..||++|++.++.++. .++|+|++||+++.. ++.++++.|
T Consensus 80 ~~~~~~~~~~~-~~~~i~~~~~~-------~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~ 145 (260)
T TIGR01099 80 EELLKEVRSIS-PLATIFYVRQK-------EQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLY 145 (260)
T ss_pred HHHHHHhhhcc-ccceEEEEecC-------CCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHH
Confidence 0 00 01122222221 24799999999988773 378999999998754 699999999
Q ss_pred HHcCCCeEEEEEecCCCCCCCceEEEECC----CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEE
Q 010874 238 VDRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVF 313 (498)
Q Consensus 238 ~~~~ad~tv~~~~~~~~~~~~~g~v~~d~----~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif 313 (498)
+++++++ +++..++.+.+++||++.+|+ +++|..|.|||..... .+.++++|+|+|
T Consensus 146 ~~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~ 205 (260)
T TIGR01099 146 EKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVL 205 (260)
T ss_pred HHhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEEC
Confidence 9988886 556566544567899999862 3699999999853211 136789999999
Q ss_pred cHHHHHHHHHhhCCC-CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHH
Q 010874 314 KKDVLFKLLRWRYPT-SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (498)
Q Consensus 314 ~~~vL~~ll~~~~~~-~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~A 367 (498)
++++|..+.+..... ...+.+++++.++++++|++|.++|||.||||+++|++|
T Consensus 206 ~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 206 TPDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred CHHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 999987664322211 234567899999999999999999999999999999975
No 39
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=4.3e-35 Score=295.24 Aligned_cols=243 Identities=22% Similarity=0.305 Sum_probs=193.2
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCC--Cc
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNG--TN 169 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~--~~ 169 (498)
+-|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+...+ |+.. .+
T Consensus 7 ~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred cceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhh
Confidence 458999999999999999999999999999999 9999999999999999999999999999999996432 2100 00
Q ss_pred CC-----------CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee--------cCH
Q 010874 170 FG-----------DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------MDY 230 (498)
Q Consensus 170 ~~-----------~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~--------~dl 230 (498)
+. .....+.+..|. ...||++|++++..++. .++|+|++||++++ .|+
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~dl 152 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDNL 152 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccccccccH
Confidence 00 000122222232 23799999999988764 37899999999874 799
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEECC-------CCCEEEEEeCCCccccccccccccccCCCccccccCC
Q 010874 231 MDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCP 303 (498)
Q Consensus 231 ~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~-------~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (498)
.++++.|.+.+++ |+++.++++ +..||++.+|+ +++|..|.|||..... .+
T Consensus 153 ~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~s 210 (302)
T PRK13389 153 AEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PS 210 (302)
T ss_pred HHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------Cc
Confidence 9999999888876 777777754 66899998863 3589999999974211 13
Q ss_pred cceeeeEEEEcHHHHHHHHHhhCC--CCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 304 YVASMGVYVFKKDVLFKLLRWRYP--TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 304 ~l~~~GIYif~~~vL~~ll~~~~~--~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
+++++|+|+|++++|. +++...+ ..+.+++++++.+++++++++|.++|||.|||||++|.+|+..+-
T Consensus 211 ~~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 211 NLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred cEEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 6899999999999984 5654332 234567899999999999999999999999999999999999873
No 40
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=4.6e-35 Score=282.40 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=182.4
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeE
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V 175 (498)
+|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+. .++ +
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~------~~~---~ 70 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDS------RFG---L 70 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcc------cCC---c
Confidence 589999999999999999999999999999 999999999999999999999999999999998631 232 3
Q ss_pred EEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHH--HcCCCeEEEEEecCC
Q 010874 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV--DRDADITISCAAVGE 253 (498)
Q Consensus 176 ~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~--~~~ad~tv~~~~~~~ 253 (498)
.+....+.. +..||+++++.++.+++ .++|+|++||++++.|+.++++.|. +.++++|+...+.+.
T Consensus 71 ~i~~~~~~~------~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (221)
T cd06422 71 RITISDEPD------ELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPG 138 (221)
T ss_pred eEEEecCCC------cccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCC
Confidence 333322220 23699999999988874 2789999999999999999999998 456666666555543
Q ss_pred CCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchh
Q 010874 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (498)
Q Consensus 254 ~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~ 333 (498)
...||.+.+|++|+|..+.|||.. +++++|+|+|++++|..+.+. ....
T Consensus 139 --~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~ 187 (221)
T cd06422 139 --HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSL 187 (221)
T ss_pred --CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccH
Confidence 567899999988999999888742 478999999999999765432 2346
Q ss_pred hhhHHHHhhcCceEEEEEcceEeecCCHHHHHHH
Q 010874 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (498)
Q Consensus 334 ~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~A 367 (498)
+++++.+++++++.+|.+++||.|||||++|.+|
T Consensus 188 ~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 188 NPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 7899999999999999999999999999999875
No 41
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=3.6e-34 Score=282.15 Aligned_cols=241 Identities=17% Similarity=0.275 Sum_probs=190.2
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcC--CCC
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF--GDG 173 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~--~~~ 173 (498)
|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++|+.+++.+|+.+.+ ++....+ ..+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 9999999999999999999999999999999986432 1111111 001
Q ss_pred eEEEecccCCCC-C---CCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEE
Q 010874 174 FVEVLAATQTPG-E---SGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 174 ~V~v~~~~q~~~-~---~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
.+.+.... ... . .......||++|+++++.++. ..++|+|++||++++.|+.++++.|.+.++++|+++.
T Consensus 80 ~~~~~~~~-~~~~~~~~~~~~~~~~t~~al~~a~~~~~-----~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~ 153 (253)
T cd02524 80 RIELHNSD-IEDWKVTLVDTGLNTMTGGRLKRVRRYLG-----DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAV 153 (253)
T ss_pred ceeeeccc-ccccceeecccCcccccHHHHHHHHHhcC-----CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEe
Confidence 12222210 000 0 000012589999999998874 1278999999999999999999999999999998775
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCC
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~ 329 (498)
. ..+.||.+.+|++|+|..+.|||..+ +.++++|+|+|++++|..+ +.. .
T Consensus 154 ~----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~l-~~~---~ 203 (253)
T cd02524 154 H----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDYI-DGD---D 203 (253)
T ss_pred c----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHhh-ccc---c
Confidence 3 24679999999999999999998642 1478999999999998644 332 4
Q ss_pred CchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhcc
Q 010874 330 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (498)
Q Consensus 330 ~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~ 374 (498)
.++.+++++.+++++++++|.++|||.+|+|+++|.+|+..+...
T Consensus 204 ~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 204 TVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred chhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 466779999999999999999999999999999999999877543
No 42
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=4.7e-34 Score=277.80 Aligned_cols=232 Identities=26% Similarity=0.398 Sum_probs=191.5
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+ +|+. .
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~-----~~~~-~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS-----RFGV-R 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchh-----hcCC-e
Confidence 7899999999999999999999999999999 9999999999999999999999999899988885321 2321 2
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
+.++. +. +..||+++++.+..++. .++|++++||++++.++.++++.|.+.++++++++.+.++
T Consensus 74 i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (236)
T cd04189 74 ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED- 137 (236)
T ss_pred EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC-
Confidence 33332 21 13699999999988773 3689999999999999999999999999999998888765
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC--CCch
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~df 332 (498)
+..||++.+|+ ++|..+.|||..+. +.++++|+|+|++++|..+ +...+. .+.+
T Consensus 138 -~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~ 193 (236)
T cd04189 138 -PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELE 193 (236)
T ss_pred -cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEE
Confidence 46789888874 59999999986432 2578999999999998754 332222 2344
Q ss_pred hhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 333 ~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
.+++++.++++ .+|.+|.++++|.|||||++|.+||+.+++
T Consensus 194 ~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 194 ITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 57899998866 569999999999999999999999999886
No 43
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=4.8e-33 Score=267.39 Aligned_cols=223 Identities=25% Similarity=0.424 Sum_probs=185.2
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+ .++. .+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~-----~~~~-~~~ 73 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY-----RGGI-RIY 73 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc-----ccCc-eEE
Confidence 69999999999999999999999999999 9999999999999999999999999998988886322 1221 122
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (498)
+... +. ..|++++++.++.+++ .++|++++||++++.++.++++.|++.++++++++.+.++ .
T Consensus 74 ~~~~-~~--------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~ 136 (223)
T cd06915 74 YVIE-PE--------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--A 136 (223)
T ss_pred EEEC-CC--------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--C
Confidence 2221 11 2699999999987763 3789999999999999999999999888889988887654 4
Q ss_pred CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchhhhh
Q 010874 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (498)
Q Consensus 257 ~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~~di 336 (498)
..|+.+.+|++|+|..+.|||... .++++++|+|+|++++|..+... ..++.+++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~ 191 (223)
T cd06915 137 SRYGNVTVDGDGRVIAFVEKGPGA---------------------APGLINGGVYLLRKEILAEIPAD----AFSLEADV 191 (223)
T ss_pred CcceeEEECCCCeEEEEEeCCCCC---------------------CCCcEEEEEEEECHHHHhhCCcc----CCChHHHH
Confidence 578999999889999999987643 13688999999999999754222 23456789
Q ss_pred HHHHhhcCceEEEEEcceEeecCCHHHHHHHH
Q 010874 337 IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 337 i~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An 368 (498)
++.+++++++.+|.++++|.||+|++||+.|+
T Consensus 192 ~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 192 LPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 99999888999999999999999999999873
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=8.2e-33 Score=264.84 Aligned_cols=217 Identities=30% Similarity=0.525 Sum_probs=182.0
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+ .++ ..+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-----~~~-~~i~ 73 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS-----KFG-VNIE 73 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh-----hcC-ceEE
Confidence 69999999999999999999999999999 9999999999999999999999999888988885321 122 1233
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (498)
++. +.. ..|++++++.++.++. .++|+|++||++++.|+.++++.|.++++++|+++.+.+ .+
T Consensus 74 ~~~--~~~-------~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 136 (217)
T cd04181 74 YVV--QEE-------PLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DP 136 (217)
T ss_pred EEe--CCC-------CCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CC
Confidence 332 221 2699999999987762 479999999999999999999999999999999988776 36
Q ss_pred CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchhhhh
Q 010874 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (498)
Q Consensus 257 ~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~~di 336 (498)
.+|+.+.+|++|+|..+.|||.... ..++++|+|+|++++|. +++.......++..++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~ 194 (217)
T cd04181 137 SRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDA 194 (217)
T ss_pred CcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHH
Confidence 6899999998899999999987532 25789999999999885 5554322345778899
Q ss_pred HHHHhhcCceEEEEEcceEeecC
Q 010874 337 IPAAIMEHDVQAYIFRDYWEDIG 359 (498)
Q Consensus 337 i~~~i~~~~I~~~~~~~~w~dIg 359 (498)
++.+++++++++|.++|+|.|||
T Consensus 195 ~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 195 IPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHhcCCEEEEEcCCEEecCC
Confidence 99999999999999999999986
No 45
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=3.6e-32 Score=261.61 Aligned_cols=219 Identities=24% Similarity=0.456 Sum_probs=177.8
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+. ..++. .+.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-----~~~~~-~i~ 73 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-----SKFGV-NIS 73 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-----cccCc-cEE
Confidence 69999999999999999999999999999 999999999999999999999999988888887531 12321 133
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (498)
++. +.. ..||+++++.+.... .++|+|++||++++.++.++++.|++.++++++++.+... .
T Consensus 74 ~~~--~~~-------~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~ 135 (220)
T cd06426 74 YVR--EDK-------PLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV--Q 135 (220)
T ss_pred EEE--CCC-------CCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--C
Confidence 322 211 269999997765332 4789999999999999999999999988999988876543 3
Q ss_pred CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchhhhh
Q 010874 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (498)
Q Consensus 257 ~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~~di 336 (498)
..||++..|+ |+|..+.|||... .++++|+|+|+++++..+ + +..+....++
T Consensus 136 ~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~---~~~~~~l~~~ 187 (220)
T cd06426 136 VPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-P---KNEFFDMPDL 187 (220)
T ss_pred CcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-C---CCCCcCHHHH
Confidence 5699999986 8999999987632 468999999999998654 2 1222235788
Q ss_pred HHHHhhc-CceEEEEEcceEeecCCHHHHHHHH
Q 010874 337 IPAAIME-HDVQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 337 i~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An 368 (498)
++.++++ .++.+|.++++|.||||+++|.+||
T Consensus 188 ~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 188 IEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 9998877 4699999999999999999999985
No 46
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.98 E-value=9.5e-32 Score=258.93 Aligned_cols=206 Identities=17% Similarity=0.267 Sum_probs=161.0
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcCCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDG 173 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~~~~ 173 (498)
++|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+ |+.. +...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~--~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPK--SSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccc--cCcc
Confidence 5899999999999999999999999999999 9999999999999999999999999999999997543 2211 1011
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHH-----cCCCeEEEE
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITISC 248 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~-----~~ad~tv~~ 248 (498)
.+.++...+ ..|++++++..... ....++|++++||++++.|+.++++.|++ +++++|+++
T Consensus 78 ~i~~~~~~~---------~~~~~~al~~~~~~-----~~~~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~ 143 (217)
T cd04197 78 IVIIIMSED---------CRSLGDALRDLDAK-----GLIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVL 143 (217)
T ss_pred eEEEEeCCC---------cCccchHHHHHhhc-----cccCCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEE
Confidence 244433211 25899999765321 01237899999999999999999999988 488999999
Q ss_pred EecCCCC----CCCceEEEECCC-CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHH
Q 010874 249 AAVGESR----ASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (498)
Q Consensus 249 ~~~~~~~----~~~~g~v~~d~~-grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL 318 (498)
.++++++ ..+++++.+|++ ++|+.|.|||..+.....+++.+++.-.+.. .+++++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 144 KEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 8877543 224678888866 8999999999876544455666666544443 4578999999999999864
No 47
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=4.3e-31 Score=252.70 Aligned_cols=249 Identities=22% Similarity=0.316 Sum_probs=205.2
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCC----
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGN---- 166 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~---- 166 (498)
++-++|||+|||.||||.|.|+..||-||||-+| |+|+|+++.+..+||++|++||+.+...|.+|+...| +..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 4567999999999999999999999999999999 9999999999999999999999999999999987654 321
Q ss_pred -CC--------cCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeec---CHHHHH
Q 010874 167 -GT--------NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFI 234 (498)
Q Consensus 167 -~~--------~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~---dl~~ll 234 (498)
+. +. ...+.+.+..|.. ++|.|||+.+|..++. +++|.|+.||.++.. .+.+++
T Consensus 81 ~~K~~~L~~v~~i-~~~~~i~~vRQ~e-------~~GLGhAVl~A~~~vg------~EpFaVlL~Ddl~~~~~~~l~qmi 146 (291)
T COG1210 81 RGKRELLEEVRSI-PPLVTISFVRQKE-------PLGLGHAVLCAKPFVG------DEPFAVLLPDDLVDSEKPCLKQMI 146 (291)
T ss_pred hCHHHHHHHHHhc-ccCceEEEEecCC-------CCcchhHHHhhhhhcC------CCceEEEeCCeeecCCchHHHHHH
Confidence 11 01 1234555555643 4799999999999985 589999999998865 378899
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCceEEE----ECCC-CCEEEEEeCCCccccccccccccccCCCccccccCCcceeee
Q 010874 235 QSHVDRDADITISCAAVGESRASDYGLVK----IDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG 309 (498)
Q Consensus 235 ~~h~~~~ad~tv~~~~~~~~~~~~~g~v~----~d~~-grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 309 (498)
+.+.+.+.. ++.+.+++.++.++||++. .+.+ .+|..+.|||+.... .|+++-.|
T Consensus 147 ~~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~G 206 (291)
T COG1210 147 ELYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVG 206 (291)
T ss_pred HHHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeee
Confidence 999888774 6777888877789999998 4333 489999999976542 46899999
Q ss_pred EEEEcHHHHHHHHHhhCCC--CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCC
Q 010874 310 VYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376 (498)
Q Consensus 310 IYif~~~vL~~ll~~~~~~--~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~ 376 (498)
-|+|+|++|. +|++..+. .+-.++|.+..+++...+++|.++|-.+|+|++..|.+|+.++..+.+
T Consensus 207 RYil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~~ 274 (291)
T COG1210 207 RYVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRRP 274 (291)
T ss_pred eeecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhCh
Confidence 9999999997 56765443 233478999999999999999999999999999999999999876543
No 48
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=3.4e-30 Score=244.92 Aligned_cols=198 Identities=47% Similarity=0.782 Sum_probs=161.0
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcCCCCeE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFV 175 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~~~~~V 175 (498)
|||||||.||||+|||..+||+|+||+|+||||+|+++++.++|+++|+|+++++.+++.+|+.+.. |+. +.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 6999999999999999999999999999878999999999999999999999999999999986432 221 1111225
Q ss_pred EEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCC
Q 010874 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESR 255 (498)
Q Consensus 176 ~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~ 255 (498)
.++...+.. .+.|.+||++|++.+..++++ ...++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 555433311 123568999999999988852 12478999999999999999999999998888887664
Q ss_pred CCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC-CCCchhh
Q 010874 256 ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-TSNDFGS 334 (498)
Q Consensus 256 ~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~-~~~df~~ 334 (498)
+++|+|+|++++|..+++...+ ..+++.+
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 2679999999999777765322 3457789
Q ss_pred hhHHHHhhcCceEEEEEcceEeec
Q 010874 335 EIIPAAIMEHDVQAYIFRDYWEDI 358 (498)
Q Consensus 335 dii~~~i~~~~I~~~~~~~~w~dI 358 (498)
|+++.+++++++++|.++|||.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999999999999999999986
No 49
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.97 E-value=3.7e-30 Score=249.50 Aligned_cols=222 Identities=17% Similarity=0.246 Sum_probs=173.0
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+ + .+ +.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~-~------~~---~~ 69 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKK-Y------PN---IK 69 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhc-c------CC---eE
Confidence 69999999999999999999999999999 99999999999999999999999999999888852 1 11 45
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (498)
++...+.. ..|++++++.++.+++ ++|++++||++++. ++++.|.+.++++|+++.+..+...
T Consensus 70 ~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (229)
T cd02523 70 FVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWE 132 (229)
T ss_pred EEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCccccc
Confidence 55433321 2699999999987762 78999999999865 5677888888899998877444334
Q ss_pred CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHh---hCC--CCCc
Q 010874 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYP--TSND 331 (498)
Q Consensus 257 ~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~---~~~--~~~d 331 (498)
..++....| ++++..+.|||..+. ....+++|+|+|++++|..+.+. ..+ ...+
T Consensus 133 ~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~ 191 (229)
T cd02523 133 DEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNL 191 (229)
T ss_pred ccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccc
Confidence 456654444 378999999886542 12578999999999998765432 111 2456
Q ss_pred hhhhhHHHHhhcCc--eEEEEEcceEeecCCHHHHHHHH
Q 010874 332 FGSEIIPAAIMEHD--VQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 332 f~~dii~~~i~~~~--I~~~~~~~~w~dIgt~~dy~~An 368 (498)
+.+++++.++++.+ ++.+.. ++|.||+|+++|++|+
T Consensus 192 ~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 192 YYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred cHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 77899999988444 445554 8999999999999874
No 50
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.97 E-value=1.4e-29 Score=245.78 Aligned_cols=222 Identities=18% Similarity=0.243 Sum_probs=168.9
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
.||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|++++.. ....|+.+.+ ... .. .+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~-~~~-~~---~~~ 73 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESL-KLL-AP---NAT 73 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHH-HHh-CC---CCE
Confidence 48999999999999999999999999999 99999999999999999999986432 2223332221 100 00 123
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (498)
++...+. ..||++++..++.++. ..++|+|++||++++.++.++++.|.+.+.+.++++...+ .
T Consensus 74 i~~~~~~--------~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 137 (231)
T cd04183 74 VVELDGE--------TLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS---H 137 (231)
T ss_pred EEEeCCC--------CCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---C
Confidence 3222111 2699999999987773 2378999999999999999999999887777777666542 3
Q ss_pred CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHH-HHHHHHHhhC-----CCCC
Q 010874 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLRWRY-----PTSN 330 (498)
Q Consensus 257 ~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~-vL~~ll~~~~-----~~~~ 330 (498)
.+|+.+.+|++|+|..+.||+.. +.++++|+|+|+++ .|.+.++... +...
T Consensus 138 ~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~ 194 (231)
T cd04183 138 PRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGE 194 (231)
T ss_pred CCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCc
Confidence 57999999999999999988531 24689999999997 6655555311 1123
Q ss_pred chhhhhHHHHhhcC-ceEEEEE-cceEeecCCHHHH
Q 010874 331 DFGSEIIPAAIMEH-DVQAYIF-RDYWEDIGTIKSF 364 (498)
Q Consensus 331 df~~dii~~~i~~~-~I~~~~~-~~~w~dIgt~~dy 364 (498)
.+.+++++.+++++ +|.+|.+ +++|.|||||++|
T Consensus 195 ~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 195 FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 35678999999775 6999999 6999999999987
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.95 E-value=2.1e-27 Score=236.70 Aligned_cols=233 Identities=18% Similarity=0.288 Sum_probs=167.8
Q ss_pred eEEEEEeCCCCCcccCCcc-CCCccceecCC-cchhHHHHHHHHHhc-CCCeEEEEeccCchh-HHHHHHhhccCCCCcC
Q 010874 95 VAAIILGGGAGTKLFPLTL-RAATPAVPVAG-CYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNF 170 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~-~~PK~LlpI~G-~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~~-l~~hl~~~~~~~~~~~ 170 (498)
|++||||||.||||+|||. .+||+|+|++| + |||+++++++.+. ++++|+|+++++... +.+++.+ .
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~-~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~------- 71 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDK-SLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G------- 71 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCC-cHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c-------
Confidence 6899999999999999996 79999999999 6 9999999999998 599999999976543 4344431 0
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee--cCHHHHHHHHHH---cCCCeE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVD---RDADIT 245 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~--~dl~~ll~~h~~---~~ad~t 245 (498)
. ..+.++.... .+||++|+..+..++.. ....+.++|++||+++. .+|.++++.|.+ .++.+|
T Consensus 72 ~-~~~~ii~ep~---------~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt 139 (274)
T cd02509 72 L-PEENIILEPE---------GRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVT 139 (274)
T ss_pred C-CCceEEECCC---------CCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEE
Confidence 0 1244543222 26999999999888752 12346799999999886 567777776554 677788
Q ss_pred EEEEecCCCCCCCceEEEECCCC-----CEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHH
Q 010874 246 ISCAAVGESRASDYGLVKIDNMG-----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (498)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~d~~g-----rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ 320 (498)
+.+.+.+. .+.||++..+++. +|..|.|||.....+.+ .....+++|+|+|+|+++.|.+
T Consensus 140 ~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~~ 204 (274)
T cd02509 140 FGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFLE 204 (274)
T ss_pred EEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHHH
Confidence 88877643 4689999998653 89999999975432111 0112468999999999998887
Q ss_pred HHHhhCCCCC----------------chhhhhHHH--------Hh--hcCceEEEEEcceEeecCCHHH
Q 010874 321 LLRWRYPTSN----------------DFGSEIIPA--------AI--MEHDVQAYIFRDYWEDIGTIKS 363 (498)
Q Consensus 321 ll~~~~~~~~----------------df~~dii~~--------~i--~~~~I~~~~~~~~w~dIgt~~d 363 (498)
.++...|... .+..+.++. ++ +..++.+...+..|-|+|++++
T Consensus 205 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 205 ELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 7775443210 111222332 12 2267888888889999999875
No 52
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.95 E-value=1.2e-27 Score=230.33 Aligned_cols=204 Identities=19% Similarity=0.310 Sum_probs=160.2
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|+|||||||.|+||+|+|...||+|+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.++... +.+ ..
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~-~~~-~~ 77 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSL-SSK-MI 77 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccc-cCC-ce
Confidence 6899999999999999999999999999999 99999999999999999999999999999999976543110 111 12
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHH--HHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS--HVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~--h~~~~ad~tv~~~~~~ 252 (498)
+.++...+. ...||+++++++.+++. ++|+|++||+++++|+.++++. +...++++|+++....
T Consensus 78 v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~ 143 (216)
T cd02507 78 VDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLAS 143 (216)
T ss_pred EEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEecc
Confidence 444443332 13799999999987663 7899999999999999999976 5556777777776544
Q ss_pred CCC-------CCCceEEEECCC---CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHH
Q 010874 253 ESR-------ASDYGLVKIDNM---GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (498)
Q Consensus 253 ~~~-------~~~~g~v~~d~~---grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL 318 (498)
... ..+++++.+|++ .+++++.|++.... .+.+..+++.-.|+ ...++++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~-~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 144 PPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPN-VTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCC-EEEEcCcccccEEEecCcCC
Confidence 322 457899999987 68888888876542 34456667765554 35688999999999999864
No 53
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.95 E-value=3.7e-26 Score=220.97 Aligned_cols=221 Identities=22% Similarity=0.338 Sum_probs=173.0
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
|||||||.|+||+| .+||+|+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+++.+ ++ ++
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~--------~~---~~ 65 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--------PN---VE 65 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC--------CC---cE
Confidence 69999999999996 689999999999 99999999999999999999999988888777641 22 34
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
++.... ..|++++++.+++++++ ..++|+++.||+ +...++.++++.|.+.++++++.+.+.++
T Consensus 66 ~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~- 131 (229)
T cd02540 66 FVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED- 131 (229)
T ss_pred EEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC-
Confidence 443221 25999999999988741 247899999998 33567899999998877888887776654
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC---CCCc
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSND 331 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~---~~~d 331 (498)
+..|+.+..|++|+|..+.|||...... ...+.+++|+|+|+++.|.++++.... ....
T Consensus 132 -p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~ 193 (229)
T cd02540 132 -PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEY 193 (229)
T ss_pred -CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcE
Confidence 5679988888889999999987422100 012578999999999887777765432 2345
Q ss_pred hhhhhHHHHhhc-CceEEEEEcce--EeecCCHHHH
Q 010874 332 FGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSF 364 (498)
Q Consensus 332 f~~dii~~~i~~-~~I~~~~~~~~--w~dIgt~~dy 364 (498)
+++++++.++++ .+|+++.++|| |+.|+||.++
T Consensus 194 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 194 YLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 678999999976 57999999877 6778888763
No 54
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=2.6e-26 Score=220.66 Aligned_cols=201 Identities=21% Similarity=0.300 Sum_probs=151.6
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCc-hhHHHHHHhhccCCCCcCCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~-~~l~~hl~~~~~~~~~~~~~~ 173 (498)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++.. +.+.+++.+..+... .. .
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~--~~-~ 76 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLK--QK-L 76 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccC--cc-e
Confidence 6899999999999999999999999999999 99999999999999999999999765 456666642112111 01 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCC
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (498)
.+.+.. +. ...||+++++.+...+ .++|+|++||++++.++.++++.|++.++.+|+++.+...
T Consensus 77 ~~~~~~--~~-------~~~gt~~al~~~~~~i-------~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~ 140 (214)
T cd04198 77 DEVTIV--LD-------EDMGTADSLRHIRKKI-------KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPV 140 (214)
T ss_pred eEEEec--CC-------CCcChHHHHHHHHhhc-------CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCC
Confidence 122221 11 1369999999998665 3789999999999999999999999999999999887542
Q ss_pred C----------C-CCCceEEEECC-CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHH
Q 010874 254 S----------R-ASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (498)
Q Consensus 254 ~----------~-~~~~g~v~~d~-~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL 318 (498)
. + ...+.++.+|+ ++|++.+..... ..+.+.++.++|.-.|+ ...+.++.++++|+|++++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~--~~~~~~~~~~~l~~~~~-~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 141 SSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEED--LDEDLELRKSLLKRHPR-VTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred cccccCCcccccCCCCCceEEEcCCCCEEEEECCHHH--hhhhhhHHHHHHHhCCC-EEEEcCcccceEEEEEeeeC
Confidence 1 1 23567777775 578888865322 22334556677765554 35578999999999998764
No 55
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.93 E-value=1.6e-24 Score=230.84 Aligned_cols=240 Identities=16% Similarity=0.282 Sum_probs=165.2
Q ss_pred eEEEEEeCCCCCcccCCccC-CCccceecCC-cchhHHHHHHHHHhcCCCeEEEEeccCch-hHHHHHHhhccCCCCcCC
Q 010874 95 VAAIILGGGAGTKLFPLTLR-AATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~-~PK~LlpI~G-~~pLId~~L~~l~~sGi~~I~Vv~~~~~~-~l~~hl~~~~~~~~~~~~ 171 (498)
|.+||||||.||||+|||.. +||+|+|++| + |||+|+++.|...++++++|+++.... .+.+.+. .+ +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~-~~-------~ 71 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLR-EI-------G 71 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHH-Hc-------C
Confidence 67999999999999999997 9999999977 7 999999999999999999999985443 2333442 21 1
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeec--CHHHHHHHH---HHcCCCeEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DYMDFIQSH---VDRDADITI 246 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~--dl~~ll~~h---~~~~ad~tv 246 (498)
.....++.... .+|||+|+..+..++.... ...+.++|++||+++.. +|.++++.+ .+.++.+|+
T Consensus 72 ~~~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtl 141 (468)
T TIGR01479 72 KLASNIILEPV---------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTF 141 (468)
T ss_pred CCcceEEeccc---------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11122333222 2699999988776663100 12345999999987653 488888765 344566666
Q ss_pred EEEecCCCCCCCceEEEECC------CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHH
Q 010874 247 SCAAVGESRASDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (498)
Q Consensus 247 ~~~~~~~~~~~~~g~v~~d~------~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ 320 (498)
...+... .+.||++..++ .++|..|.|||....... ......+++|+|||+|+++.|.+
T Consensus 142 gi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~-------------~l~~g~~~wNsGif~~~~~~ll~ 206 (468)
T TIGR01479 142 GIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQA-------------YLESGDYYWNSGMFLFRASRYLA 206 (468)
T ss_pred EecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHH-------------HHhcCCeEEEeeEEEEEHHHHHH
Confidence 6655443 46899999973 268999999997543211 01112478999999999887776
Q ss_pred HHHhhCCCC-----------------CchhhhhHH---------HHhh-cCceEEEEEcceEeecCCHHHHHHHH
Q 010874 321 LLRWRYPTS-----------------NDFGSEIIP---------AAIM-EHDVQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 321 ll~~~~~~~-----------------~df~~dii~---------~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An 368 (498)
.++...|+. ..+..++++ .+++ ..++++...+.+|.|+|++++++++-
T Consensus 207 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 207 ELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 665543311 011123444 1122 25788888888999999999999874
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=4.7e-23 Score=201.75 Aligned_cols=234 Identities=17% Similarity=0.201 Sum_probs=160.6
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
++.+||||+|.++||. +|+|+|++|+ |||+|+++.|.++|+++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~--------~~-- 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA--------FG-- 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH--------cC--
Confidence 4789999999999994 5999999999 999999999999999999998864 556666641 22
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
+.++...+. +..||+++...+. .++ ....+.+++++||+ +. ..++.++++.|.+.++++++++.+.
T Consensus 63 -~~v~~~~~~-------~~~gt~~~~~~~~-~~~---~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~ 130 (245)
T PRK05450 63 -GEVVMTSPD-------HPSGTDRIAEAAA-KLG---LADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPI 130 (245)
T ss_pred -CEEEECCCc-------CCCchHHHHHHHH-hcC---CCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeec
Confidence 233322221 1357776554332 221 01235699999999 54 4568899999887777777777666
Q ss_pred CC----CCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 252 ~~----~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
.+ ..++.++++ +|++|+|++|.|||..+.... .++. ...+++.++|+|+|++++|..+.+. .+
T Consensus 131 ~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~-~~ 197 (245)
T PRK05450 131 HDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSL-PP 197 (245)
T ss_pred CCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhC-CC
Confidence 32 234567765 888999999999985331100 0000 0124799999999999999877553 22
Q ss_pred CCCchh--hhhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHHh
Q 010874 328 TSNDFG--SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 328 ~~~df~--~dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~l 371 (498)
...+.. .++++.+-++.+|+++.+++ +|.|||||+||..|+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 198 SPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 211111 11223233456899999996 999999999999999764
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.91 E-value=4.9e-23 Score=200.89 Aligned_cols=226 Identities=16% Similarity=0.260 Sum_probs=157.2
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+.+||||+|.|+||. ||+|+|++|+ |||+|+++++.++ |+++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~--------~~-- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES--------FG-- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH--------cC--
Confidence 579999999999996 5999999999 9999999999998 99999998864 566666641 22
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHc-CCCeEEEEEe
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDR-DADITISCAA 250 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~-~ad~tv~~~~ 250 (498)
+.++...+. +..||++ +..+...++ ...+.||+++||+ ++ ..++..+++.|.+. ++++++++.+
T Consensus 63 -~~~~~~~~~-------~~~gt~~-~~~~~~~~~----~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (239)
T cd02517 63 -GKVVMTSPD-------HPSGTDR-IAEVAEKLD----ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATP 129 (239)
T ss_pred -CEEEEcCcc-------cCchhHH-HHHHHHhcC----CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 333332221 1258876 444544442 1136799999997 44 56789999988776 7888888887
Q ss_pred cCCCC----CCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC
Q 010874 251 VGESR----ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (498)
Q Consensus 251 ~~~~~----~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~ 326 (498)
.+++. ...|+ +..|++|+|..|.+||...... |. ...+.++++|+|+|++++|..+.+..
T Consensus 130 ~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~--~~~~~~~~~Giy~~~~~~~~~~~~~~- 193 (239)
T cd02517 130 ISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SS--EDFPYYKHIGIYAYRRDFLLRFAALP- 193 (239)
T ss_pred cCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CC--CCCceeEEEEEEEECHHHHHHHHhCC-
Confidence 75421 22334 5577789999998876422100 00 00136899999999999998765431
Q ss_pred CCCCchhhhhHH--HHhhc-CceEEEEEcceEeecCCHHHHHHHHH
Q 010874 327 PTSNDFGSEIIP--AAIME-HDVQAYIFRDYWEDIGTIKSFYEANM 369 (498)
Q Consensus 327 ~~~~df~~dii~--~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~ 369 (498)
+...+ ..+.++ .++++ .+++++..+++|.|||||++|..|++
T Consensus 194 ~~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 194 PSPLE-QIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred Cchhh-hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 11111 223333 34544 45999999999999999999999974
No 58
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=1.3e-22 Score=191.29 Aligned_cols=225 Identities=15% Similarity=0.236 Sum_probs=151.6
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEe-ccCchhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLT-QFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~-~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
|..|+|||||||.|+||.| ..||+|+.|+|+ +||+|+|++|.+.|+++++||+ +|+.+.+..++. .| .|
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~-~~-----~~ 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLK-KY-----PF 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHh-cC-----Cc
Confidence 4679999999999999999 899999999999 9999999999999999999999 888887777764 33 22
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
..+++...... ..+|+.++..+.+++. +.|++++||++|...+ ++...+.... ++.+..
T Consensus 71 ---~~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~---~e~l~~a~~~-~li~d~ 129 (239)
T COG1213 71 ---NAKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSI---LERLLEAPGE-GLIVDR 129 (239)
T ss_pred ---ceEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHH---HHHHHhCcCC-cEEEec
Confidence 14555443322 1366899999988775 6799999999998654 3344443332 333332
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCC
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~ 330 (498)
.+......-.....+++|++..+..+-.. .+..++|++.|+++++..+.+-.....
T Consensus 130 ~~~~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~~~e~~- 185 (239)
T COG1213 130 RPRYVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYELLVERS- 185 (239)
T ss_pred cccccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHHHhhhh-
Confidence 22111111122334468999988755442 245789999999998865544321111
Q ss_pred chhhhhHHHHhhcCceEEEEE-----cceEeecCCHHHHHHHHHHhhcc
Q 010874 331 DFGSEIIPAAIMEHDVQAYIF-----RDYWEDIGTIKSFYEANMALTKE 374 (498)
Q Consensus 331 df~~dii~~~i~~~~I~~~~~-----~~~w~dIgt~~dy~~An~~ll~~ 374 (498)
.+ .+....+...+.+-.. ..+|+||+||+|+.+|.+.+...
T Consensus 186 ~~---~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~ 231 (239)
T COG1213 186 EY---DYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPN 231 (239)
T ss_pred hH---HHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHH
Confidence 11 1222222222222222 25799999999999999988754
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.88 E-value=2.4e-21 Score=188.89 Aligned_cols=225 Identities=17% Similarity=0.290 Sum_probs=153.3
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~-~-------~~- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVE-A-------FG- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHH-H-------cC-
Confidence 4789999999999995 4999999999 9999999999998 89999999864 56766664 2 22
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCC-CeEEEEE
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDA-DITISCA 249 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~a-d~tv~~~ 249 (498)
++++...+. +..|++. +..+...+ ..+.|+++.||+ +...++.++++.|.+.+. ++++++.
T Consensus 64 --~~v~~~~~~-------~~~g~~~-~~~a~~~~------~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 127 (238)
T PRK13368 64 --GKVVMTSDD-------HLSGTDR-LAEVMLKI------EADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCA 127 (238)
T ss_pred --CeEEecCcc-------CCCccHH-HHHHHHhC------CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEE
Confidence 222222221 1246764 55554333 247899999996 556789999998876543 5666666
Q ss_pred ecCC-CC---CCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhh
Q 010874 250 AVGE-SR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (498)
Q Consensus 250 ~~~~-~~---~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~ 325 (498)
+.+. .+ +..+++ .++++|++..+.|+|...... . ....++.++|+|+|++++|..+ +..
T Consensus 128 ~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~--------------~-~~~~~~~n~giy~~~~~~l~~~-~~~ 190 (238)
T PRK13368 128 PISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRD--------------G-ESARYLKHVGIYAFRRDVLQQF-SQL 190 (238)
T ss_pred EcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCC--------------C-CCCceeEEEEEEEeCHHHHHHH-HcC
Confidence 5543 11 334444 456679999998765321100 0 0013588999999999999864 321
Q ss_pred CCCCC-chhh-hhHHHHh-hcCceEEEEEcceEeecCCHHHHHHHHHH
Q 010874 326 YPTSN-DFGS-EIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (498)
Q Consensus 326 ~~~~~-df~~-dii~~~i-~~~~I~~~~~~~~w~dIgt~~dy~~An~~ 370 (498)
.+... ++.. +++ .++ ...+++++..+++|.|||||+||..|+..
T Consensus 191 ~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 191 PETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 11111 1222 455 454 44569999988999999999999999764
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.84 E-value=9.4e-20 Score=193.07 Aligned_cols=242 Identities=17% Similarity=0.281 Sum_probs=159.9
Q ss_pred ceEEEEEeCCCCCcccCCccC-CCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchh-HHHHHHhhccCCCCcCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLR-AATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSAS-LNRHIARTYFGNGTNFG 171 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~-~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~-l~~hl~~~~~~~~~~~~ 171 (498)
+|.+||||||.||||||+|.. +||+|+|++|..|||+++++.+...++.+.+|+|+..... +.+++. . +.
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~-~-------~~ 76 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLR-Q-------LN 76 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHH-h-------cC
Confidence 389999999999999999998 7999999965339999999999988888888888865543 333442 1 11
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCC-CCeEEEEcCceeeecC--HHHHHHHHH---HcCCCeE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRN-IENVAILCGDHLYRMD--YMDFIQSHV---DRDADIT 245 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~-~e~~Lvl~GD~l~~~d--l~~ll~~h~---~~~ad~t 245 (498)
.....++.+... ++||.|+..+..++... ... ..-++|+++||+.... |.+.++... +.+.-+|
T Consensus 77 ~~~~~ii~EP~~---------rnTApaialaa~~~~~~-~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt 146 (478)
T PRK15460 77 KLTENIILEPAG---------RNTAPAIALAALAAKRH-SPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVT 146 (478)
T ss_pred CccccEEecCCC---------CChHHHHHHHHHHHHHh-cCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 000134432221 58999988776555421 111 3568899999987543 555554432 2355556
Q ss_pred EEEEecCCCCCCCceEEEECCC---------CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHH
Q 010874 246 ISCAAVGESRASDYGLVKIDNM---------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD 316 (498)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~d~~---------grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~ 316 (498)
+...|... .+.||+++.++. .+|..|.|||.....+.+. ....+++|+|||+|+.+
T Consensus 147 ~GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl-------------~~G~y~WNsGiF~~~a~ 211 (478)
T PRK15460 147 FGIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYV-------------ASGEYYWNSGMFLFRAG 211 (478)
T ss_pred EecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHH-------------HcCCEEEecceeheeHH
Confidence 65555443 367999998642 2699999999876543321 12347999999999999
Q ss_pred HHHHHHHhhCCC--------------CCch--h-hhhHH--------HHhh--cCceEEEEEcceEeecCCHHHHHHHH
Q 010874 317 VLFKLLRWRYPT--------------SNDF--G-SEIIP--------AAIM--EHDVQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 317 vL~~ll~~~~~~--------------~~df--~-~dii~--------~~i~--~~~I~~~~~~~~w~dIgt~~dy~~An 368 (498)
.|...++...|. ..++ + .+.++ .++- ..++.+.+.+--|.|+|++.++.+..
T Consensus 212 ~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 212 RYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 877666543331 0010 0 12222 2221 25688888877899999999998863
No 61
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=2.5e-19 Score=162.43 Aligned_cols=220 Identities=15% Similarity=0.199 Sum_probs=157.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|.|||||||.|||+.|||...||+|+.|.|+ |||+++|+.|.+.||++|+|||||..++. +||...| +
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy-------~--- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKY-------D--- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhc-------C---
Confidence 6799999999999999999999999999999 99999999999999999999999998876 6887543 2
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
|.+++..... --....++..++++++ +..|+.+|.....++ +.+.....+-.......
T Consensus 69 vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~- 126 (231)
T COG4750 69 VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG- 126 (231)
T ss_pred eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC-
Confidence 6777654321 1256688888888884 578899999776553 11212222222211111
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHH---HHHHHHhhCCC---
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDV---LFKLLRWRYPT--- 328 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~v---L~~ll~~~~~~--- 328 (498)
..+-.++..+.+|+|..+.-.-. ...+.+|+-.|+... +..+++..+-.
T Consensus 127 -~tnEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~ 181 (231)
T COG4750 127 -KTNEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLEN 181 (231)
T ss_pred -CCceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCchh
Confidence 23455778888999998853222 257889999999754 44455554422
Q ss_pred CCchhhhhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHHhhc
Q 010874 329 SNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 329 ~~df~~dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~ll~ 373 (498)
..-|..++.-..+++..+++-..++ --+.+++.++|......++.
T Consensus 182 ~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l~ 227 (231)
T COG4750 182 RKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFLS 227 (231)
T ss_pred hhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhcC
Confidence 1234556677777777777766653 47789999999888776543
No 62
>PLN02917 CMP-KDO synthetase
Probab=99.79 E-value=1.7e-17 Score=166.66 Aligned_cols=237 Identities=14% Similarity=0.149 Sum_probs=157.2
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
.+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+. |++.++.+.+.+++. . ++
T Consensus 45 ~~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~-VVV~~~~e~I~~~~~-~-------~~ 108 (293)
T PLN02917 45 RSRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDH-IVVATDDERIAECCR-G-------FG 108 (293)
T ss_pred CCcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCE-EEEECChHHHHHHHH-H-------cC
Confidence 356789999999999995 4999999999 999999999998765444 333456677766664 1 12
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEE--E
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITI--S 247 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv--~ 247 (498)
++++...+.. ..||+++ ..+.+.++ ...+.++++.||. +....+..+++.+.+. +++++ +
T Consensus 109 ---v~vi~~~~~~-------~~GT~~~-~~a~~~l~----~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~ 172 (293)
T PLN02917 109 ---ADVIMTSESC-------RNGTERC-NEALKKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTA 172 (293)
T ss_pred ---CEEEeCCccc-------CCchHHH-HHHHHhcc----CCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEE
Confidence 2333221211 2488877 46666653 1246899999999 3345688999988653 44433 3
Q ss_pred EEecCCCCCCCceEEE--ECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhh
Q 010874 248 CAAVGESRASDYGLVK--IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (498)
Q Consensus 248 ~~~~~~~~~~~~g~v~--~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~ 325 (498)
+.+...+++.+||.++ .|++|+++.|..++-.+.... +++ .....+.++|||.|+.+.|.. +...
T Consensus 173 ~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~~--~~~i~~~n~Giy~f~~~~L~~-l~~l 239 (293)
T PLN02917 173 VTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KVN--PQFPYLLHLGIQSYDAKFLKI-YPEL 239 (293)
T ss_pred eeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------ccc--cccceEEEEEEEEeCHHHHHH-HHcC
Confidence 3344434567899886 687899887765432111000 000 112368899999999999984 4432
Q ss_pred CC---CCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhcc
Q 010874 326 YP---TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (498)
Q Consensus 326 ~~---~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~ 374 (498)
.+ +.+.++++++ .+-++.+|.++..+.....|+|++|+..|+..+.++
T Consensus 240 ~~~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 240 PPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred CCCcccchhccHHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 22 2456777776 333345788888765667999999999999987543
No 63
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=7.7e-18 Score=165.29 Aligned_cols=240 Identities=18% Similarity=0.308 Sum_probs=160.8
Q ss_pred eEEEEEeCCCCCcccCCcc-CCCccceecCC-cchhHHHHHHHHHh-cCCCeEEEEeccCchh-HHHHHHhhccCCCCcC
Q 010874 95 VAAIILGGGAGTKLFPLTL-RAATPAVPVAG-CYRLIDIPMSNCIN-SGINKIFVLTQFNSAS-LNRHIARTYFGNGTNF 170 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~-~~PK~LlpI~G-~~pLId~~L~~l~~-sGi~~I~Vv~~~~~~~-l~~hl~~~~~~~~~~~ 170 (498)
|.+||||||.|||||||+. .+||+++++.| + .|++.+++++.. .++++++|+|+..... +.+.+.+. +.+.
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~-Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~----~~~~ 76 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDL-SLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI----DIEN 76 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCC-cHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh----hhcc
Confidence 6899999999999999975 59999999965 6 999999999988 6799999999876543 33444310 0010
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC--HHHHHHHHH---HcCCCeE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSHV---DRDADIT 245 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d--l~~ll~~h~---~~~ad~t 245 (498)
- .. ++-+.. + +.||.|+..+.-.+.. ...+.-++|++.||+.... |.+.++... +++.-+|
T Consensus 77 ~-~~--illEP~--g-------RnTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVT 142 (333)
T COG0836 77 A-AG--IILEPE--G-------RNTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVT 142 (333)
T ss_pred c-cc--eEeccC--C-------CCcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEE
Confidence 0 11 332222 1 5799999877544432 1223459999999988654 666665543 3455556
Q ss_pred EEEEecCCCCCCCceEEEECCC------CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHH
Q 010874 246 ISCAAVGESRASDYGLVKIDNM------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319 (498)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~d~~------grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~ 319 (498)
+...|... .+.||+++..+. -+|.+|.|||.....+.+. ....+++|+|+|+|+...+.
T Consensus 143 fGI~Pt~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~l 207 (333)
T COG0836 143 FGIPPTRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVFL 207 (333)
T ss_pred EecCCCCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHHH
Confidence 55555433 368999998542 2799999999876543221 22348999999999999877
Q ss_pred HHHHhhCCC-----------CCc--hh---hh--------hHHHHh--hcCceEEEEEcceEeecCCHHHHHHHH
Q 010874 320 KLLRWRYPT-----------SND--FG---SE--------IIPAAI--MEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 320 ~ll~~~~~~-----------~~d--f~---~d--------ii~~~i--~~~~I~~~~~~~~w~dIgt~~dy~~An 368 (498)
+.++...|. ..+ +. .+ -+..++ +..++.+.+.+-.|-|+|++.++++..
T Consensus 208 ~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~ 282 (333)
T COG0836 208 EELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL 282 (333)
T ss_pred HHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence 666654332 001 10 11 122223 236788888888899999999988764
No 64
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.63 E-value=1.7e-14 Score=139.72 Aligned_cols=219 Identities=17% Similarity=0.147 Sum_probs=141.9
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCc-hhHHHHHHhhccCCCCc
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS-ASLNRHIARTYFGNGTN 169 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~-~~l~~hl~~~~~~~~~~ 169 (498)
|+.+.+||||||.|+||. ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+++. ..
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~----~~--- 69 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLL----AK--- 69 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhh----cc---
Confidence 456889999999999995 3478999999999 99999999999865 899999998765 33322221 10
Q ss_pred CCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEE
Q 010874 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITIS 247 (498)
Q Consensus 170 ~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~ 247 (498)
. ..+.++. .. .+.+++++.+...++ ..+.++++.||. +....+..+++.+.+.+ ..+.
T Consensus 70 ~--~~~~~~~--~~---------~~~~~sv~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~ 129 (227)
T PRK00155 70 D--PKVTVVA--GG---------AERQDSVLNGLQALP-----DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAIL 129 (227)
T ss_pred C--CceEEeC--Cc---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEE
Confidence 0 1133332 11 256899999887663 236799999998 33456889999876653 3444
Q ss_pred EEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 248 ~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
+.+..+ .+. .++++|.+..+.+. ... .... +.|.|+.+.|.+++....+
T Consensus 130 ~~~~~~----~~~--~v~~~g~~~~~~~r---~~~---------------------~~~~-~p~~f~~~~l~~~~~~~~~ 178 (227)
T PRK00155 130 AVPVKD----TIK--RSDDGGGIVDTPDR---SGL---------------------WAAQ-TPQGFRIELLREALARALA 178 (227)
T ss_pred EEeccc----cEE--EEcCCCceeecCCh---HHh---------------------eeee-CCccchHHHHHHHHHHHHh
Confidence 445433 122 23555666554321 110 1222 3799999999888765332
Q ss_pred CCCchhhhhHHHHhh-cCceEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 328 TSNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 328 ~~~df~~dii~~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
. ..+..|....+.+ ..++..+..+..+.+|+|++||..|+..+.+
T Consensus 179 ~-~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 179 E-GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred c-CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 1 2233443333222 3467666666668899999999999876643
No 65
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.63 E-value=1.6e-14 Score=138.87 Aligned_cols=210 Identities=14% Similarity=0.128 Sum_probs=140.1
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCc-hhHHHHHHhhccCCCCcCCCCe
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~-~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|||||||.|+||.. ..||+|+|++|+ |||+|+++++..+ ++++|+|++++.. +.+..++. . . ..
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-----~--~---~~ 67 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLV-----A--R---AV 67 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhh-----c--C---Cc
Confidence 79999999999973 479999999999 9999999999998 8999999998754 33332222 0 0 01
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
++++. +. .+..++++.++..++ ..+.++++.||. +. ...+..+++.+.+. ++++++.+..
T Consensus 68 ~~~~~--~~---------~~~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~ 129 (217)
T TIGR00453 68 PKIVA--GG---------DTRQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA 129 (217)
T ss_pred EEEeC--CC---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc
Confidence 33332 11 134578888876551 247899999998 34 45578888877654 3444555543
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCch
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df 332 (498)
.++..+|++|.+..+.|+.. .....+ .|.|+...|.+++....... .+
T Consensus 130 ------~~v~~~~~~g~~~~~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~-~~ 177 (217)
T TIGR00453 130 ------DTLKRVEADGFIVETVDREG------------------------LWAAQT-PQAFRTELLKKALARAKEEG-FE 177 (217)
T ss_pred ------ceEEEEcCCCceeecCChHH------------------------eEEEeC-CCcccHHHHHHHHHHHHhcC-CC
Confidence 34555566677777765321 123344 69999999988776432222 22
Q ss_pred hhhhHHHHhh-cCceEEEEEcceEeecCCHHHHHHHHHH
Q 010874 333 GSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (498)
Q Consensus 333 ~~dii~~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An~~ 370 (498)
..|....+.+ ..++..+..+..+.+|+|++||..|+..
T Consensus 178 ~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 178 ITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 3444433332 3567777766667899999999988753
No 66
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.60 E-value=1e-13 Score=135.46 Aligned_cols=228 Identities=15% Similarity=0.203 Sum_probs=143.2
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
+||+|+|.|+||. +|+|++++|+ |||.|+++++.++++++|+|++.. +.+.+++. . ++ ++
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~-~-------~g---~~ 61 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQ-K-------FG---IE 61 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHH-H-------cC---CE
Confidence 7999999999994 6999999999 999999999999899999998864 44555553 2 22 22
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
++...+.. ..|+.. +..+...+. ....+.++++.||. +. ...+.++++.+.+.+.++++++.+..+.
T Consensus 62 ~v~~~~~~-------~~Gt~r-~~~~~~~l~---~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~ 130 (238)
T TIGR00466 62 VCMTSKHH-------NSGTER-LAEVVEKLA---LKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDA 130 (238)
T ss_pred EEEeCCCC-------CChhHH-HHHHHHHhC---CCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCH
Confidence 22111110 124433 333333331 01235688999998 34 4557888888866667778877776542
Q ss_pred CC---CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCc
Q 010874 255 RA---SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (498)
Q Consensus 255 ~~---~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~d 331 (498)
.. .+...+..|.+|+.+.|...+.......+ .....|.. ..++...|+|.|++++|.++.... ++..+
T Consensus 131 ~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~-----~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~-~~~le 201 (238)
T TIGR00466 131 EEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFF-----AKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWK-PCVLE 201 (238)
T ss_pred HHccCCCceEEEeCCCCeEEEecCCCCCCCCCcc-----cccccccc---cceeEEEEEEeCCHHHHHHHHhCC-CCccc
Confidence 11 22334445778898888765332110000 00111211 125678999999999999876542 22111
Q ss_pred hh--hhhHHHHhhcCceEEEEEcce-EeecCCHHHH
Q 010874 332 FG--SEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSF 364 (498)
Q Consensus 332 f~--~dii~~~i~~~~I~~~~~~~~-w~dIgt~~dy 364 (498)
-. -|-++.+-.+.+|.+...+.. -..|+||+|+
T Consensus 202 ~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 202 EIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 11 134555556688998888755 4599999987
No 67
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.58 E-value=5.5e-14 Score=134.99 Aligned_cols=212 Identities=17% Similarity=0.201 Sum_probs=140.7
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
.+||||||.|+||++ ..||+|+|++|+ |||+|+++++..++ +++|+|++++........+. .+ . .. ..
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~-~~-~----~~-~~ 70 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELA-KY-G----LS-KV 70 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHH-hc-c----cC-CC
Confidence 589999999999985 379999999999 99999999999876 99999999877655443331 11 0 11 11
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+.++... .+..++++.++..+++ ...+.++++.||+ +. ...+..+++.+.+.++ .+.+.+..
T Consensus 71 ~~~~~~~-----------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~ 134 (218)
T cd02516 71 VKIVEGG-----------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVT 134 (218)
T ss_pred eEEECCc-----------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEecc
Confidence 3443211 2457889888876631 1246799999998 33 4558888888865543 34444443
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCch
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df 332 (498)
+ ++...|++|.+..+.|..+ -....++ ++|+.+.|.+++...... ..+
T Consensus 135 ~------~~~~~~~~g~~~~~~~r~~------------------------~~~~~~P-~~f~~~~~~~~~~~~~~~-~~~ 182 (218)
T cd02516 135 D------TIKRVDDDGVVVETLDREK------------------------LWAAQTP-QAFRLDLLLKAHRQASEE-GEE 182 (218)
T ss_pred c------cEEEecCCCceeecCChHH------------------------hhhhcCC-CcccHHHHHHHHHHHHhc-CCC
Confidence 2 2344677788888765321 1345667 999999999888654333 223
Q ss_pred hhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHH
Q 010874 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYE 366 (498)
Q Consensus 333 ~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~ 366 (498)
++|....+.+. .++....-+..-.||+||+||..
T Consensus 183 ~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 183 FTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred cCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 45544333332 45666555555569999999964
No 68
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.57 E-value=1.7e-13 Score=131.92 Aligned_cols=216 Identities=19% Similarity=0.222 Sum_probs=137.9
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+.+||||+|.|+||. .|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++. .+ +.
T Consensus 2 ~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~-~~-------~~- 63 (223)
T cd02513 2 ILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVAR-KY-------GA- 63 (223)
T ss_pred eEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHH-Hh-------CC-
Confidence 579999999999995 3999999999 99999999999987 788887763 455555543 11 10
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.+.+.......+. ..|+.++++.++..+++. ....+.++++.||. +...++..+++.+.+.+++.++.+.+.
T Consensus 64 ~~~~~~~~~~~~~-----~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~ 137 (223)
T cd02513 64 EVPFLRPAELATD-----TASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEF 137 (223)
T ss_pred CceeeCChHHCCC-----CCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 0112211110000 148899999998877521 01136899999999 555678999999988778877777665
Q ss_pred CCCCCCCceEEEECCCC-CEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCC
Q 010874 252 GESRASDYGLVKIDNMG-RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~g-rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~ 330 (498)
.+ ..-++.. .+++| .+..+.++..... -+ ....+..++|+|+++++.|.+. ..
T Consensus 138 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~-----q~-----------~~~~~~~n~~~y~~~~~~~~~~-------~~ 191 (223)
T cd02513 138 HR--FPWRALG-LDDNGLEPVNYPEDKRTRR-----QD-----------LPPAYHENGAIYIAKREALLES-------NS 191 (223)
T ss_pred Cc--CcHHhee-eccCCceeccCcccccCCc-----CC-----------ChhHeeECCEEEEEEHHHHHhc-------CC
Confidence 43 1122222 22223 2222211111000 00 0123567889999999987531 00
Q ss_pred chhhhhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHH
Q 010874 331 DFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMA 370 (498)
Q Consensus 331 df~~dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~ 370 (498)
. -..++..+..+. .-.||+|++||..|...
T Consensus 192 ~----------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 192 F----------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred c----------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 1 156787887776 48999999999988653
No 69
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.56 E-value=1.7e-13 Score=141.96 Aligned_cols=208 Identities=13% Similarity=0.116 Sum_probs=138.8
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
|+++.+||||||.|+||. ...||+++|++|+ |||+|+++.+.+++ +++|+|++++....+.+.+. . .+
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~----~---~~ 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKAL----P---EI 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhc----c---cC
Confidence 667899999999999994 4589999999999 99999999999987 79999999876554433221 1 11
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~ 248 (498)
. .+.++. .. .+..++|+.++..++ .+.+++..||. +.+ ..+..+++...+ .+.++.+
T Consensus 72 ~--~v~~v~--gG---------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~ 130 (378)
T PRK09382 72 K--FVTLVT--GG---------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPA 130 (378)
T ss_pred C--eEEEeC--CC---------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEE
Confidence 1 133332 11 256788999887764 26789999986 444 346777776654 3567777
Q ss_pred EecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC
Q 010874 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (498)
Q Consensus 249 ~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~ 328 (498)
.++.+ ...|+...+|. .++..+ ++|.... .+.+.... ..
T Consensus 131 ~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~----~~ 169 (378)
T PRK09382 131 LPVAD--TLKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAA----DG 169 (378)
T ss_pred EEecc--CcEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHH----hC
Confidence 78766 34565445543 345444 6665432 11222211 11
Q ss_pred CCchhhhhHHHHhh-cCceEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 329 ~~df~~dii~~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
..+ .+|..+.+.. ..+|..+.-+..|.+|+||+||..|+..+..
T Consensus 170 ~~~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 170 RGD-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCC-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 222 3455554443 4678888888899999999999999887643
No 70
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.56 E-value=3.7e-14 Score=133.00 Aligned_cols=125 Identities=20% Similarity=0.242 Sum_probs=94.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|.|||||||+|+||.+ .||+|+|++|+ |||+|+++++.++++++|+|+++++.+.+..|+.+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999976 79999999999 9999999999999999999999988888877775211
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--eecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l--~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
..+.. +.+ .|...++..++..+. ..++|++++||+. ....+..+++.+...+.....++.+
T Consensus 65 ~~~~~---~~g-------~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 65 KDYKN---ASG-------KGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred cEEEe---cCC-------CCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 12221 111 477788887765432 2478999999984 3566888998887665554444433
No 71
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.53 E-value=4.7e-13 Score=130.02 Aligned_cols=218 Identities=14% Similarity=0.124 Sum_probs=136.0
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCch-hHHHHHHhhccCCCCcCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSA-SLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~-~l~~hl~~~~~~~~~~~~ 171 (498)
++.+||||||.|+||. ...||+|++++|+ |||.|+++++.++ .+++|+|+++.... .+.+.+. .| + +.
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~-~~-~----~~ 71 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMK-QL-N----VA 71 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHH-hc-C----cC
Confidence 3689999999999996 3579999999999 9999999999876 58999999976432 2222332 22 1 10
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
...++++... .+..++++.++..++ ..+.++++.||. +.. ..+..+++.+.+.++. +.+.
T Consensus 72 ~~~~~~v~~g-----------~~r~~sv~~gl~~~~-----~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~ 133 (230)
T PRK13385 72 DQRVEVVKGG-----------TERQESVAAGLDRIG-----NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAV 133 (230)
T ss_pred CCceEEcCCC-----------chHHHHHHHHHHhcc-----CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEE
Confidence 1124444211 134588888877663 235678889999 444 4478888887765543 3333
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCC
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~ 329 (498)
++.+ .+... .+|.+....+ ++ . .+.--+.|.|+.+.|.+..+.....
T Consensus 134 ~~~d------ti~~~-~~~~~~~~i~--r~-~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~- 180 (230)
T PRK13385 134 EVKD------TVKRV-KDKQVIETVD--RN-E----------------------LWQGQTPQAFELKILQKAHRLASEQ- 180 (230)
T ss_pred eccc------eEEEE-cCCeeEeccC--HH-H----------------------HhhhcCCceeeHHHHHHHHHHHHhc-
Confidence 4332 12222 2354433322 11 1 1222347899998888776642222
Q ss_pred CchhhhhHHHHh-hcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 330 NDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 330 ~df~~dii~~~i-~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
..+.++....+. ...+|..+.-+.....|+||+|+..|...+.
T Consensus 181 ~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 181 QFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred CCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 223445333333 3456777766667899999999999987664
No 72
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.53 E-value=3e-13 Score=126.60 Aligned_cols=119 Identities=13% Similarity=0.238 Sum_probs=88.4
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+.+++.+ .++ +.
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~-------~~~---v~ 65 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLAN-------HSN---IT 65 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc-------CCC---eE
Confidence 7999999999997 48999999999 99999999999999999999999887655444321 122 44
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCe
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADI 244 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~ 244 (498)
++.... +..|++++++.++.+ . ...+.++++.||+ +. ...+..+++.+.+.+.++
T Consensus 66 ~v~~~~--------~~~g~~~si~~~l~~-~----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 66 LVHNPQ--------YAEGQSSSIKLGLEL-P----VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEECcC--------hhcCHHHHHHHHhcC-C----CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 443221 125889999988752 1 1247899999999 33 346788888876655543
No 73
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.52 E-value=8.7e-14 Score=127.02 Aligned_cols=120 Identities=19% Similarity=0.313 Sum_probs=92.4
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
+||||||.|+||. .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +++..++. +++ ++
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~--------~~~---~~ 61 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLE--------RYG---IK 61 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHT--------TTT---SE
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHh--------ccC---ce
Confidence 7999999999997 39999999999 999999999999999999999988 44544442 122 44
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-e-cCHHHHHHHHHHcCCCeEEEE
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~-~dl~~ll~~h~~~~ad~tv~~ 248 (498)
++..... -.|++++|+.+...+. ..+.|++++||+.+ + ..+..+++.+.+.++++++..
T Consensus 62 ~v~~~~~--------~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 62 VVVDPEP--------GQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp EEE-STS--------SCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEeccc--------cCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 5443221 2599999999986652 35899999999943 4 457889998887777765543
No 74
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.52 E-value=3.8e-14 Score=137.44 Aligned_cols=136 Identities=21% Similarity=0.316 Sum_probs=93.2
Q ss_pred chhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCC-----------CccccCCCCCCCCCCccCCCeEe
Q 010874 331 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESP-----------AFHFYDPKTPFYTSPRFLPPTKI 399 (498)
Q Consensus 331 df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~-----------~~~~~~~~~~i~~~~~i~~~~~i 399 (498)
+| .|.++.++..+ ++.+++||.|+ ++|++||+++|+... ...+......+.+++.+.+++.|
T Consensus 29 ~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~I 101 (231)
T TIGR03532 29 DF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVII 101 (231)
T ss_pred cc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEE
Confidence 44 57788777666 88899999999 999999999997632 11122233344444444444444
Q ss_pred c-Ceee------e-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcc---------eEEeCCccccchhHHHHhhcC
Q 010874 400 D-NCRI------K-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD---------TVMLGADYYQTESEIASLLAE 460 (498)
Q Consensus 400 ~-~~~I------~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~---------svi~~~~~~~~~~~~~s~l~~ 460 (498)
+ ++.| . +++||++|.|+ ++.|. +++||++|+||.++.|.+ ++|.++
T Consensus 102 G~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~--------------- 166 (231)
T TIGR03532 102 GDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDN--------------- 166 (231)
T ss_pred CCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCC---------------
Confidence 2 2333 2 57777777777 67674 778888888888888764 334433
Q ss_pred CcccEEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 461 GKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 461 ~~~~v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||.++.| .+++|++++.|++++++..
T Consensus 167 ----v~IG~gsvI~~g~~Ig~~~~IgagsvV~~ 195 (231)
T TIGR03532 167 ----VLIGANAVILEGVRVGKGAVVAAGAIVTE 195 (231)
T ss_pred ----cEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 788888887 4788888888888888754
No 75
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.43 E-value=1.1e-12 Score=122.28 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=89.4
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++++.+.++++|+|++++....+.+++. .++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~--------~~~--- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALA--------GLP--- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc--------CCC---
Confidence 4589999999999985 8999999999 9999999999999999999999887655533331 122
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-e-eecCHHHHHHHHHHcCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-L-YRMDYMDFIQSHVDRDAD 243 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l-~~~dl~~ll~~h~~~~ad 243 (498)
+.++..... ..|++++++.++..+.. ..+.++++.||+ + ....+..+++.+.+.+++
T Consensus 64 ~~~~~~~~~--------~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 VVVVINPDW--------EEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred eEEEeCCCh--------hhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 333332221 25999999999876631 247899999999 3 345578888877654443
No 76
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.42 E-value=1.9e-11 Score=120.28 Aligned_cols=221 Identities=14% Similarity=0.091 Sum_probs=132.8
Q ss_pred CCCCCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHhhccCCC
Q 010874 89 RVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNG 167 (498)
Q Consensus 89 ~~~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~-sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~ 167 (498)
...++.+.+||||||.|+||. ...||++++++|+ |||+|+++.+.+ .++++|+|++++......+.+.+.
T Consensus 19 ~~~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~----- 89 (252)
T PLN02728 19 VVKEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN----- 89 (252)
T ss_pred ccccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh-----
Confidence 344667899999999999996 3579999999999 999999999998 489999999987644333322221
Q ss_pred CcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce---eee-cCHHHHHHHHHHcCCC
Q 010874 168 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH---LYR-MDYMDFIQSHVDRDAD 243 (498)
Q Consensus 168 ~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~---l~~-~dl~~ll~~h~~~~ad 243 (498)
++ ..+.++. .. .+..++|+.++..++ .+..+|+.+|. +.. ..+..+++...+.++
T Consensus 90 --~~-~~i~~v~--gg---------~~r~~SV~~gl~~l~------~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga- 148 (252)
T PLN02728 90 --ID-VPLKFAL--PG---------KERQDSVFNGLQEVD------ANSELVCIHDSARPLVTSADIEKVLKDAAVHGA- 148 (252)
T ss_pred --cC-CceEEcC--CC---------CchHHHHHHHHHhcc------CCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe-
Confidence 11 1133321 11 134677888876663 13445666673 333 346788887766654
Q ss_pred eEEEEEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHH
Q 010874 244 ITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR 323 (498)
Q Consensus 244 ~tv~~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~ 323 (498)
.+...++.+ .+...++++.|... +........|- =..|+.+.|.+..+
T Consensus 149 -~i~~~~~~d------tik~v~~~~~v~~t---~~R~~l~~~QT----------------------PQ~F~~~~l~~a~~ 196 (252)
T PLN02728 149 -AVLGVPVKA------TIKEANSDSFVVKT---LDRKRLWEMQT----------------------PQVIKPELLRRGFE 196 (252)
T ss_pred -EEEeecchh------hEEEecCCCceeec---cChHHeEEEeC----------------------CccchHHHHHHHHH
Confidence 355555443 23334555554332 22222111111 14566777766655
Q ss_pred hhCCCCCchhhhhHHHHh-hcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 324 WRYPTSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 324 ~~~~~~~df~~dii~~~i-~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
....... +.+|-...+. ...+|....-+..-+-|.||+|+..|+..+-
T Consensus 197 ~~~~~~~-~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~ 245 (252)
T PLN02728 197 LVEREGL-EVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILN 245 (252)
T ss_pred HHHhcCC-CcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHh
Confidence 4322222 2344333222 2355665444445688999999999987654
No 77
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.41 E-value=5e-12 Score=117.83 Aligned_cols=107 Identities=12% Similarity=0.177 Sum_probs=80.9
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|.+||||||.|+||.+ ||+|+|++|+ |||+|+++.+... +++|+|++++..+. . . .++
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~-~-------~~~--- 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----Y-A-------LLG--- 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----H-h-------hcC---
Confidence 4689999999999984 8999999999 9999999999887 89999999886543 1 1 111
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHH
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSH 237 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h 237 (498)
+.++.... +..|..++|+.++..++ .+.++++.||+ +.+ ..+..+++.+
T Consensus 59 ~~~v~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 VPVIPDEP--------PGKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CcEeeCCC--------CCCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 33443221 12589999999886653 47899999999 334 4467777665
No 78
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.40 E-value=1.4e-11 Score=116.31 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=81.7
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|.+|.+||||||.|+||. ..||+++|++|+ |||+|+++.+. .++++|+|+++...+.+ . . ++
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~-~-------~~ 62 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----A-A-------FG 62 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----H-h-------cC
Confidence 567899999999999995 268999999999 99999999998 78999999987643221 1 1 11
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeec-CHHHHHHHHHH
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVD 239 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~-dl~~ll~~h~~ 239 (498)
+.++..... ...|..++++.++... ..+.++++.||+ +... .+..+++.+.+
T Consensus 63 ---~~~v~~~~~-------~~~g~~~~i~~~l~~~------~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 63 ---LPVIPDSLA-------DFPGPLAGILAGLKQA------RTEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred ---CcEEeCCCC-------CCCCCHHHHHHHHHhc------CCCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 233322111 1258888998887643 247899999999 4443 46777776543
No 79
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.39 E-value=2.7e-12 Score=109.16 Aligned_cols=80 Identities=38% Similarity=0.620 Sum_probs=74.0
Q ss_pred CeEe-cCeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe
Q 010874 396 PTKI-DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474 (498)
Q Consensus 396 ~~~i-~~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~ 474 (498)
|++| ++++|++++||++|.|+++.|++|+||++|+|+++|+|.+|+++++ +.||+++.+.
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~ 61 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR 61 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence 3455 4588889999999999989999999999999999999999999998 8999999999
Q ss_pred eeEECCCCEECCCcEEeCCC
Q 010874 475 NCIIDKNVKIGKDVVIVNKD 494 (498)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~ 494 (498)
+|+|++++.|++++.+.+..
T Consensus 62 ~siig~~~~Ig~~~~v~~~~ 81 (104)
T cd04651 62 RAIIDKNVVIPDGVVIGGDP 81 (104)
T ss_pred eEEECCCCEECCCCEECCCc
Confidence 99999999999999998874
No 80
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.33 E-value=1.8e-10 Score=111.34 Aligned_cols=215 Identities=16% Similarity=0.223 Sum_probs=141.0
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V 175 (498)
|||+|+|.++||. .|.+.|++|+ |||.|+++.+.+++ +++|+|.+. .+.+.+... .| +. .+
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~-~~-------g~-~v 63 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAK-SY-------GA-SV 63 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHH-Hc-------CC-Ee
Confidence 7999999999994 4999999999 99999999999986 688877654 345544432 22 21 12
Q ss_pred EEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--ecCHHHHHHHHHHcCCCeEEEEEecCC
Q 010874 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGE 253 (498)
Q Consensus 176 ~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~--~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (498)
.+..+..-. .+..|+.++++.++..++.. ...+.++++.+|.=+ ..++..+++.+.+.++|..+.+.+...
T Consensus 64 ~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~ 136 (222)
T TIGR03584 64 PFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAF 136 (222)
T ss_pred EEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCC
Confidence 222111100 01258899999998777421 124779999999933 457899999988877888888777543
Q ss_pred CCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchh
Q 010874 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (498)
Q Consensus 254 ~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~ 333 (498)
. .+-....+++|+...+......... ++. ...+..+.++|+++++.|.+ . . .+
T Consensus 137 ~---~~~~~~~~~~g~~~~~~~~~~~~~r--------------Qd~-~~~y~~nga~y~~~~~~~~~---~----~-~~- 189 (222)
T TIGR03584 137 P---IQRAFKLKENGGVEMFFPEHFNTRS--------------QDL-EEAYHDAGQFYWGKSQAWLE---S----G-PI- 189 (222)
T ss_pred C---hHHheEECCCCcEEecCCCcccCCC--------------CCC-chheeeCCeEEEEEHHHHHh---c----C-Cc-
Confidence 1 1222345566777665422111000 000 12356799999999998752 1 1 11
Q ss_pred hhhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHHh
Q 010874 334 SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 334 ~dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~l 371 (498)
-..++..|..+. ...||+|++||..|...+
T Consensus 190 --------~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 190 --------FSPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred --------cCCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 135677888775 489999999999997643
No 81
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.33 E-value=9.4e-11 Score=109.13 Aligned_cols=121 Identities=18% Similarity=0.310 Sum_probs=93.3
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
+..+.+||||||.|+||. .+|.|+|+.|+ ||++++++.+.+++.++|+|+++|........+. .
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~----~------ 66 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALL----A------ 66 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhh----c------
Confidence 456889999999999999 68999999999 9999999999999999999999997322211111 1
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHc
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR 240 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~ 240 (498)
...+.++.+.+ |-+|.+.+++.+...... ..+.++++.||+ +...++..+++.++..
T Consensus 67 ~~~~~~v~npd--------~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 67 QLGVTVVVNPD--------YAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred cCCeEEEeCcc--------hhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 11256665443 447999999999877652 125899999999 5567788888877665
No 82
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.33 E-value=8e-12 Score=101.20 Aligned_cols=77 Identities=13% Similarity=0.415 Sum_probs=69.7
Q ss_pred cCCCeEe-cCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 393 FLPPTKI-DNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 393 i~~~~~i-~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
++++++| .++.|.+++||++|.|+ ++.|++|+|++++.|+++|+|.+++++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCC
Confidence 4556666 35777789999999999 89999999999999999999999999998 899999
Q ss_pred cEEeeeEECCCCEECCCc
Q 010874 471 TKIRNCIIDKNVKIGKDV 488 (498)
Q Consensus 471 ~~i~~~iI~~~~~Ig~~~ 488 (498)
+++.+|+|+++++|++++
T Consensus 63 ~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred CEEccCEECCCcEeCCCC
Confidence 999999999999999885
No 83
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.30 E-value=8.3e-11 Score=110.10 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=82.2
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
+.+||||||.|+||. .+||+|+|++|+ |||+|+++++.. ++++|+|++++..+. +... .++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~-------~~~--- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQA-------GFG--- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc-------cCC---
Confidence 458999999999997 259999999999 999999999975 699999988754321 1110 111
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~d-l~~ll~~h~~~~ad 243 (498)
+.++..... +..|+.++|+.++..++ .+.++++.||+ +...+ +..+++...+.+++
T Consensus 62 ~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 62 LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 233332211 12699999999987663 47899999998 55544 56776665443433
No 84
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=3.8e-10 Score=105.94 Aligned_cols=235 Identities=16% Similarity=0.219 Sum_probs=160.3
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
++..+||.|-=.+|||.. |||-.|+|+ |||.|+.++..++|.++|+|.|.. +.+.+++. .||.
T Consensus 2 ~~~~viIPAR~~STRLpg------KPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~--------~~G~ 64 (247)
T COG1212 2 MKFVVIIPARLASTRLPG------KPLADIGGK-PMIVRVAERALKSGADRVVVATDD--ERIAEAVQ--------AFGG 64 (247)
T ss_pred CceEEEEecchhcccCCC------CchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHH--------HhCC
Confidence 456789999988999986 999999999 999999999999999999999954 67777775 2431
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
.+ ++.... ...|| +-+..+...+. ....+-++=+.||. +. ...+..+++...+.+++|.-++.+
T Consensus 65 -~a-vmT~~~--------h~SGT-dR~~Ev~~~l~---~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~ 130 (247)
T COG1212 65 -EA-VMTSKD--------HQSGT-DRLAEVVEKLG---LPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVK 130 (247)
T ss_pred -EE-EecCCC--------CCCcc-HHHHHHHHhcC---CCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeee
Confidence 12 221111 22477 44545544442 12345677789998 33 345788888877778888777777
Q ss_pred cCCCC---CCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 251 VGESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 251 ~~~~~---~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
..++. ..+-..+..|.+|+-+.|.--|-....+. .- ..+.+--.|||.|++++|.++..+. |
T Consensus 131 i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~~-------------~~p~l~HIGIYayr~~~L~~f~~~~-p 195 (247)
T COG1212 131 ITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-FG-------------GTPFLRHIGIYAYRAGFLERFVALK-P 195 (247)
T ss_pred cCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-cC-------------CcchhheeehHHhHHHHHHHHHhcC-C
Confidence 65432 13445566888999999987665432110 00 0246778999999999999887653 2
Q ss_pred CCCchhh--hhHHHHhhcCceEEEEEcceE-eecCCHHHHHHHHHHhhc
Q 010874 328 TSNDFGS--EIIPAAIMEHDVQAYIFRDYW-EDIGTIKSFYEANMALTK 373 (498)
Q Consensus 328 ~~~df~~--dii~~~i~~~~I~~~~~~~~w-~dIgt~~dy~~An~~ll~ 373 (498)
+.-+-.+ |-|.-+=.+.+|.+...+..- ..|+|++|+..+.+.+.+
T Consensus 196 s~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 196 SPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred chhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 2111111 123333356889998888654 899999999999887754
No 85
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.26 E-value=4.2e-11 Score=108.54 Aligned_cols=110 Identities=23% Similarity=0.337 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|.+||+|||+||||.- .=|||++++|+ |||+|+++.+.+ .+++|+++++.+.....+|+.+. +
T Consensus 1 m~~iiMAGGrGtRmg~----~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~--------g--- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMGR----PEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV--------G--- 63 (177)
T ss_pred CceEEecCCcccccCC----CcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc--------C---
Confidence 5799999999999982 34999999999 999999999988 89999999999999898888632 2
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-ec-CHHHHHHHHH
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQSHV 238 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~~-dl~~ll~~h~ 238 (498)
++++. +++ .|--.-++.+.+.+ ..++|++++|+.+ +. .+..+++.+.
T Consensus 64 v~vi~---tpG-------~GYv~Dl~~al~~l-------~~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 VKVIE---TPG-------EGYVEDLRFALESL-------GTPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred ceEEE---cCC-------CChHHHHHHHHHhc-------CCceEEEecccccCCHHHHHHHHHHHh
Confidence 56664 232 25656666666554 2599999999954 43 3566666654
No 86
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.26 E-value=2.9e-10 Score=108.18 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=80.0
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
+++.+||||||.|+||. .+|+|+|++|+ |||+|+++++.. .+++|+|++++. +.. ..+. . .
T Consensus 6 ~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~-~~~~ivvv~~~~-~~~-~~~~----~----~-- 66 (200)
T PRK02726 6 NNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAA-CADEVYIITPWP-ERY-QSLL----P----P-- 66 (200)
T ss_pred CCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHh-hCCEEEEECCCH-HHH-Hhhc----c----C--
Confidence 45889999999999996 37999999999 999999999975 478999988642 212 1111 1 0
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeec-CHHHHHHHHH
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHV 238 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~-dl~~ll~~h~ 238 (498)
.+.++...+ +..|..++++.++..++ .+.++|+.||+ +... .+..+++.+.
T Consensus 67 -~~~~i~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 -GCHWLREPP--------PSQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred -CCeEecCCC--------CCCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 134443222 12689999999987663 37899999999 3343 4667777653
No 87
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.24 E-value=4.5e-10 Score=106.52 Aligned_cols=107 Identities=11% Similarity=0.246 Sum_probs=73.0
Q ss_pred CCCCCceEEEEEeCCCCCcccCCccCCCccceecCC-cchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCC
Q 010874 89 RVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNG 167 (498)
Q Consensus 89 ~~~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G-~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~ 167 (498)
++++.++.+||||||.|+||. .+|+|+|++| + |||+|+++++... +++|+|++++ +.. .
T Consensus 3 ~~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~------- 62 (196)
T PRK00560 3 NPMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----E------- 62 (196)
T ss_pred CccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----c-------
Confidence 345677899999999999996 5899999999 9 9999999999876 8999999875 111 0
Q ss_pred CcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecCH-HHH
Q 010874 168 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDY-MDF 233 (498)
Q Consensus 168 ~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~dl-~~l 233 (498)
+. ++++...+.. ..|...++..++... ..+.++|+.||+ +...++ ..+
T Consensus 63 --~~---~~~v~d~~~~-------~~gpl~gi~~~l~~~------~~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 63 --FN---APFLLEKESD-------LFSPLFGIINAFLTL------QTPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred --cC---CcEEecCCCC-------CCCcHHHHHHHHHhc------CCCeEEEEecCcCcCCHHHHHHH
Confidence 11 2233221111 135555665554322 247899999999 435443 444
No 88
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.9e-11 Score=128.89 Aligned_cols=91 Identities=12% Similarity=0.297 Sum_probs=80.8
Q ss_pred CCCCCCCCccCCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCC
Q 010874 384 KTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 461 (498)
Q Consensus 384 ~~~i~~~~~i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~ 461 (498)
...+..++.|+.+++|+ ++.|.||+||.||.|| ++.|++|.||.+|+||.||+|++|+|+++
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---------------- 390 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---------------- 390 (673)
T ss_pred hccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC----------------
Confidence 34556677788888884 7999999999999999 99999999999999999999999999999
Q ss_pred cccEEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 010874 462 KVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 462 ~~~v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~ 493 (498)
|+|++++.+ .+||||-++.+|++.++.-.
T Consensus 391 ---v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 391 ---VKIGEGAILKPGSVLGFGVVVGRNFVLPKN 420 (673)
T ss_pred ---cEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence 999999999 57999999999998877544
No 89
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.20 E-value=9.5e-11 Score=94.17 Aligned_cols=75 Identities=23% Similarity=0.384 Sum_probs=64.3
Q ss_pred cCCCeEe-cCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 393 FLPPTKI-DNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 393 i~~~~~i-~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
+.+.+.| .++.|.+++||++|.|+ ++.|++|+|+++|+|+++|.|.+++++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 4556666 35777789999999998 88999999999999999999999999988 899999
Q ss_pred cEEee-eEECCCCEECC
Q 010874 471 TKIRN-CIIDKNVKIGK 486 (498)
Q Consensus 471 ~~i~~-~iI~~~~~Ig~ 486 (498)
+.+.+ ++|+++++|++
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99987 88888888874
No 90
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.19 E-value=7.5e-10 Score=114.95 Aligned_cols=120 Identities=16% Similarity=0.190 Sum_probs=83.8
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|+++.+||||||.|+||. ..||+|+|++|+ |||+|+++.+.. .+++|+|++....+.+.+++ ..
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~-----~~----- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLF-----PG----- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhc-----cC-----
Confidence 557899999999999995 368999999999 999999999975 59999997765544332221 10
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCC
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~d-l~~ll~~h~~~~ad 243 (498)
+.++..... + ..|..++++.++..++ .+.++++.||+ +...+ +..+++.+.+.+++
T Consensus 67 ---~~~i~d~~~-g------~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 ---LPVYPDILP-G------FQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred ---CcEEecCCC-C------CCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 122221111 1 1488899998876653 36799999998 44444 56777665555544
No 91
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=3e-11 Score=120.88 Aligned_cols=69 Identities=20% Similarity=0.435 Sum_probs=67.0
Q ss_pred ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEE
Q 010874 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~I 484 (498)
+++|+++|.|+ ++.|+.|+||.+|.||+.++|.+|++|++ |.||+++.|.|||||.+|+|
T Consensus 334 d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~n-------------------V~vg~G~~IensIIg~gA~I 394 (433)
T KOG1462|consen 334 DSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDN-------------------VVVGDGVNIENSIIGMGAQI 394 (433)
T ss_pred hhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecC-------------------cEecCCcceecceeccccee
Confidence 79999999999 89999999999999999999999999999 99999999999999999999
Q ss_pred CCCcEEeCC
Q 010874 485 GKDVVIVNK 493 (498)
Q Consensus 485 g~~~~i~~~ 493 (498)
|+|+.+.|+
T Consensus 395 g~gs~L~nC 403 (433)
T KOG1462|consen 395 GSGSKLKNC 403 (433)
T ss_pred cCCCeeeee
Confidence 999999885
No 92
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.17 E-value=3e-09 Score=102.40 Aligned_cols=216 Identities=15% Similarity=0.161 Sum_probs=122.1
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~-sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+.|||||||.|+||. ...||.+++++|+ |+|.|+|+.+.+ ..+++|+|++........+.+... .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------~ 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------K 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----------T
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----------C
Confidence 469999999999997 4689999999999 999999999988 478999999986653332332221 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.+.++..- ..-.++++.++..+.+ ..+.++|--|== +.. ..+.++++..++ +.+..+...|+
T Consensus 67 ~v~iv~GG-----------~tR~~SV~ngL~~l~~----~~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p~ 130 (221)
T PF01128_consen 67 KVKIVEGG-----------ATRQESVYNGLKALAE----DCDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALPV 130 (221)
T ss_dssp TEEEEE-------------SSHHHHHHHHHHCHHC----TSSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE-
T ss_pred CEEEecCC-----------hhHHHHHHHHHHHHHc----CCCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEec
Confidence 25555421 1345889998887762 123344432221 222 236777777655 23345556666
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCc
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~d 331 (498)
.+ .+...+++|.|....+.. .+...| -=-.|+.+.|.+..+.......+
T Consensus 131 ~D------Tik~v~~~~~v~~tldR~---~l~~~Q----------------------TPQ~F~~~~l~~a~~~a~~~~~~ 179 (221)
T PF01128_consen 131 TD------TIKRVDDDGFVTETLDRS---KLWAVQ----------------------TPQAFRFELLLEAYEKADEEGFE 179 (221)
T ss_dssp SS------EEEEESTTSBEEEEETGG---GEEEEE----------------------EEEEEEHHHHHHHHHTHHHHTHH
T ss_pred cc------cEEEEecCCcccccCCHH---Heeeec----------------------CCCeecHHHHHHHHHHHHhcCCC
Confidence 54 355666678777654321 111111 12567778777766543211122
Q ss_pred hhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHh
Q 010874 332 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 332 f~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~l 371 (498)
+..|.--....+.+++...-+..-+-|.||+|+..|...|
T Consensus 180 ~tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 180 FTDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HSSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 2222111111245555544444567899999999998765
No 93
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.15 E-value=1.9e-09 Score=104.73 Aligned_cols=115 Identities=23% Similarity=0.281 Sum_probs=78.8
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCc--hhHHHHHHhhccCCCCcCCCC
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS--ASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~--~~l~~hl~~~~~~~~~~~~~~ 173 (498)
|||||+|.++||. +|.|+|++|+ |||+|+++.+..++ +++|+|+++... +.+.+++. . ++
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~-~-------~~-- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAK-K-------LG-- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHH-H-------cC--
Confidence 7999999999994 3999999999 99999999999987 899999998765 45554443 1 11
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeE
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADIT 245 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~t 245 (498)
++++..... + .+..+...++. ...+.++++.||+ +. ...+..+++.+.+.+.+++
T Consensus 65 -v~~v~~~~~----------~---~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 -VKVFRGSEE----------D---VLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred -CeEEECCch----------h---HHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 344432211 1 12222222221 1347899999999 33 4457889988876666544
No 94
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.13 E-value=6.4e-10 Score=104.67 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=84.9
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeE
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V 175 (498)
.+||||||.|+||.. +|.|++++|+ |||+|+++.+.+.++++|+|++++..+.+ +.+.+.... . ..+
T Consensus 2 ~~vILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~-~~~~~~~~~---~---~~~ 68 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE-----NKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHL-SWLDPYLLA---D---ERI 68 (190)
T ss_pred eEEEEcCCccccCCC-----CceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchh-hhhhHhhhc---C---CCe
Confidence 589999999999973 7999999999 99999999988889999999998765432 112111111 1 114
Q ss_pred EEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeec-CHHHHHHHHHHcCC
Q 010874 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDA 242 (498)
Q Consensus 176 ~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~-dl~~ll~~h~~~~a 242 (498)
.++.... |..|.+.+++.++..+.+ ...+.++++.||+ +... .+..+++...+...
T Consensus 69 ~~~~~~~--------~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 69 MLVCCRD--------ACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred EEEECCC--------hhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 4433221 235888999999876531 1347899999999 3343 46677766544333
No 95
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.10 E-value=1.1e-08 Score=98.29 Aligned_cols=222 Identities=17% Similarity=0.171 Sum_probs=132.3
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCchh-HHHHHHhhccCCCCc
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTN 169 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~~-l~~hl~~~~~~~~~~ 169 (498)
+..+.+||||||.|+||.. ..||.+++++|+ |||+|+++.+..+ .|++|+|+++..... +.++.. +
T Consensus 2 ~~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~------ 69 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L------ 69 (230)
T ss_pred CceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h------
Confidence 3567899999999999995 799999999999 9999999999885 589999999874332 222221 1
Q ss_pred CCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEE
Q 010874 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITIS 247 (498)
Q Consensus 170 ~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~ 247 (498)
.....|+++..- ..-.++++.++..+.. ...+-|||--+== +....+.++++...+. ...+.
T Consensus 70 ~~~~~v~~v~GG-----------~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~--~aai~ 133 (230)
T COG1211 70 SADKRVEVVKGG-----------ATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELADKY--GAAIL 133 (230)
T ss_pred ccCCeEEEecCC-----------ccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhhccC--CcEEE
Confidence 111235655421 2456889988877752 1123344433321 2334467777444333 34556
Q ss_pred EEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 248 ~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
+.|+.+ .+...+++|.|.+...... +...| .| -.|+.+.|.+.++....
T Consensus 134 alpv~D------Tik~~~~~~~i~~t~~R~~---l~~~Q--------TP--------------Q~F~~~~L~~a~~~a~~ 182 (230)
T COG1211 134 ALPVTD------TLKRVDADGNIVETVDRSG---LWAAQ--------TP--------------QAFRLELLKQALARAFA 182 (230)
T ss_pred EeeccC------cEEEecCCCCeeeccChhh---hhhhh--------CC--------------ccccHHHHHHHHHHHHh
Confidence 666654 3444555666765532211 11011 11 35677777766664433
Q ss_pred CCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 328 TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 328 ~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
...++..|.--.....+++....=+-+-+-|.||+|+..|+..+-
T Consensus 183 ~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 183 EGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred cCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 333333332211222455655444446789999999999987654
No 96
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.09 E-value=4.4e-09 Score=109.42 Aligned_cols=113 Identities=9% Similarity=0.169 Sum_probs=76.8
Q ss_pred CCCCCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCC
Q 010874 89 RVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGT 168 (498)
Q Consensus 89 ~~~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~ 168 (498)
+.++..+.+||||||+|+||. .+|+|+|++|+ |||+|+++.+.. .+++|+|+++..... .+. .
T Consensus 169 ~~~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~---~~~-~------ 231 (369)
T PRK14490 169 RAEEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAE---QYR-S------ 231 (369)
T ss_pred ccccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhh---HHh-h------
Confidence 445567899999999999997 48999999999 999999999976 478898877654221 111 1
Q ss_pred cCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecC-HHHHHHH
Q 010874 169 NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQS 236 (498)
Q Consensus 169 ~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~d-l~~ll~~ 236 (498)
++ +.++.... ++ .|...++..++... ..+.++++.||+ +.+.+ +..+++.
T Consensus 232 -~~---v~~i~d~~-~~-------~Gpl~gi~~al~~~------~~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 232 -FG---IPLITDSY-LD-------IGPLGGLLSAQRHH------PDAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred -cC---CcEEeCCC-CC-------CCcHHHHHHHHHhC------CCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 11 34443222 11 47667777765443 246799999999 44444 4555543
No 97
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.08 E-value=6.3e-10 Score=102.33 Aligned_cols=90 Identities=16% Similarity=0.333 Sum_probs=73.7
Q ss_pred CCCCCCCCccCCCeEe-cCeeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhc
Q 010874 384 KTPFYTSPRFLPPTKI-DNCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLA 459 (498)
Q Consensus 384 ~~~i~~~~~i~~~~~i-~~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~ 459 (498)
...+...+.+++++.| .++.|. +++||++|.|+ ++.|. +++||++|.|+++++|.+|+++++
T Consensus 11 ~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~-------------- 76 (163)
T cd05636 11 GVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG-------------- 76 (163)
T ss_pred CCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC--------------
Confidence 3344444555555666 345554 69999999998 88886 799999999999999999999988
Q ss_pred CCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 460 ~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
+.|++++.+.+|+|++++.|++++.+.+
T Consensus 77 -----~~I~~~~~i~~siIg~~~~I~~~~~i~~ 104 (163)
T cd05636 77 -----TKVPHLNYVGDSVLGENVNLGAGTITAN 104 (163)
T ss_pred -----CEeccCCEEecCEECCCCEECCCcEEcc
Confidence 8999999999999999999999998865
No 98
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=99.07 E-value=6.6e-09 Score=105.72 Aligned_cols=216 Identities=18% Similarity=0.258 Sum_probs=130.9
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecC---CcchhHHHHHHHHHhcC-----------CCeEEEEec-cCchhHHH
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINSG-----------INKIFVLTQ-FNSASLNR 157 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~---G~~pLId~~L~~l~~sG-----------i~~I~Vv~~-~~~~~l~~ 157 (498)
.++.+||||||.|||| +...||+|+||+ |+ |++++.++.+...+ .-.++|+|+ +..+.+.+
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~ 89 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRK 89 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHH
Confidence 4688999999999999 578899999998 68 99999999998742 124567787 77888888
Q ss_pred HHHh-hccCCCCc----CCCCeEEEecccCCC-CC--CC-CccccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCcee-
Q 010874 158 HIAR-TYFGNGTN----FGDGFVEVLAATQTP-GE--SG-KNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHL- 225 (498)
Q Consensus 158 hl~~-~~~~~~~~----~~~~~V~v~~~~q~~-~~--~~-~~~~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~GD~l- 225 (498)
++.+ .||+.... |....+-.+..+... -+ .. .-.+.|.|+....... .+++......+++.+.+-|.+
T Consensus 90 ~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L 169 (323)
T cd04193 90 FFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNIL 169 (323)
T ss_pred HHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccc
Confidence 8875 23442110 111111111110000 00 00 1125688888776643 455555567799999999994
Q ss_pred eecCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEE-EECCCCCEEEEEeCCCccccccccccccccCCCccccccCCc
Q 010874 226 YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLV-KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPY 304 (498)
Q Consensus 226 ~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v-~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (498)
...---.++-.|.++++++.+-+.+...+. ..-|.+ ..|..-+++.+.|-|....... . +.+- ...+
T Consensus 170 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~~-~-~~g~---------l~f~ 237 (323)
T cd04193 170 VKVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEKR-D-ADGE---------LQYN 237 (323)
T ss_pred ccccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhcc-C-cCCc---------Eecc
Confidence 433224567788889999988766554322 234444 4444345666666554322110 0 0000 0123
Q ss_pred ceeeeEEEEcHHHHHHHHHh
Q 010874 305 VASMGVYVFKKDVLFKLLRW 324 (498)
Q Consensus 305 l~~~GIYif~~~vL~~ll~~ 324 (498)
..+..+.+|+-+.|.++++.
T Consensus 238 ~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 238 AGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred cchHhhheeCHHHHHHHHhh
Confidence 44566788898888877643
No 99
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.06 E-value=5.4e-10 Score=105.59 Aligned_cols=103 Identities=23% Similarity=0.318 Sum_probs=66.1
Q ss_pred CCccCCCeEe-cCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HHhhcCCcccE
Q 010874 390 SPRFLPPTKI-DNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLAEGKVPI 465 (498)
Q Consensus 390 ~~~i~~~~~i-~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s~l~~~~~~v 465 (498)
.+.++++++| .++.|.++.||++|.|+ ++.+++++||+++.|++++.|. ++++.++..++...++ .+.++++ +
T Consensus 33 ~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~---~ 109 (193)
T cd03353 33 KTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEG---S 109 (193)
T ss_pred cCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCC---C
Confidence 3344444444 23556667777777777 6777777777777777777775 4555555444444443 3445555 5
Q ss_pred EeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 466 GVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 466 ~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
.|++.+++.+|+||+++.||+++.+.+.++
T Consensus 110 ~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~ 139 (193)
T cd03353 110 KANHLSYLGDAEIGEGVNIGAGTITCNYDG 139 (193)
T ss_pred EecccceecccEECCCCEEcCceEEeccCC
Confidence 666666777788888888888877776554
No 100
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.06 E-value=8.6e-10 Score=88.32 Aligned_cols=74 Identities=19% Similarity=0.390 Sum_probs=51.7
Q ss_pred cCCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 393 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 393 i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
++++++|. ++.|.+++|+++|.|+ ++.|.+|+|+++++|+++++|.+++++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-------------------AVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC-------------------CEECCC
Confidence 34555553 4666677777788777 67777778888888888888877777777 777777
Q ss_pred cEEe-eeEECCCCEEC
Q 010874 471 TKIR-NCIIDKNVKIG 485 (498)
Q Consensus 471 ~~i~-~~iI~~~~~Ig 485 (498)
++|. +++|+++++||
T Consensus 63 ~~i~~~~~v~~~~~ig 78 (79)
T cd05787 63 CTIPPGSLISFGVVIG 78 (79)
T ss_pred CEECCCCEEeCCcEeC
Confidence 6665 45666666555
No 101
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.06 E-value=6.3e-10 Score=90.01 Aligned_cols=66 Identities=15% Similarity=0.464 Sum_probs=60.5
Q ss_pred EEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECC
Q 010874 408 IISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (498)
Q Consensus 408 ~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~ 486 (498)
.||++|.|+ ++.|.+++||++|.|+++|+|++++++++ +.|++++.|.+|+|++++.|++
T Consensus 1 ~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~ 61 (81)
T cd04652 1 LVGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGE 61 (81)
T ss_pred CccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECC
Confidence 378889998 78888999999999999999999999988 8999999999999999999999
Q ss_pred CcEEeC
Q 010874 487 DVVIVN 492 (498)
Q Consensus 487 ~~~i~~ 492 (498)
++.+.+
T Consensus 62 ~~~v~~ 67 (81)
T cd04652 62 KCKLKD 67 (81)
T ss_pred CCEEcc
Confidence 998876
No 102
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.05 E-value=7.1e-10 Score=89.04 Aligned_cols=66 Identities=26% Similarity=0.597 Sum_probs=61.7
Q ss_pred EEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECC
Q 010874 408 IISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (498)
Q Consensus 408 ~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~ 486 (498)
+||++|.|+ ++.|.+|+||++|+|++++.|++++++++ +.|++++.|.+|+|++++.|++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~ 61 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGE 61 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECC
Confidence 478999998 78888999999999999999999999998 8999999999999999999999
Q ss_pred CcEEeC
Q 010874 487 DVVIVN 492 (498)
Q Consensus 487 ~~~i~~ 492 (498)
++.+.+
T Consensus 62 ~~~i~~ 67 (79)
T cd03356 62 NVRVVN 67 (79)
T ss_pred CCEEcC
Confidence 998876
No 103
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.05 E-value=1.2e-09 Score=88.18 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=58.5
Q ss_pred CCeEe-cCeeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCc
Q 010874 395 PPTKI-DNCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (498)
Q Consensus 395 ~~~~i-~~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~ 471 (498)
|+++| .++.|. +++|+++|.|+ ++.|.+|+|+++++|+++++|.+++++++ +.|++++
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~ 64 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWT 64 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCc
Confidence 44445 234453 68899999998 88889999999999999999999999888 8999988
Q ss_pred EEee-eEECCCCEECC
Q 010874 472 KIRN-CIIDKNVKIGK 486 (498)
Q Consensus 472 ~i~~-~iI~~~~~Ig~ 486 (498)
.+.+ ++|+++++|+.
T Consensus 65 ~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 65 RLENVTVLGDDVTIKD 80 (80)
T ss_pred EEecCEEECCceEECC
Confidence 8876 77887777763
No 104
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.01 E-value=1.3e-09 Score=87.29 Aligned_cols=66 Identities=18% Similarity=0.404 Sum_probs=60.1
Q ss_pred EEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECC
Q 010874 408 IISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (498)
Q Consensus 408 ~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~ 486 (498)
+||++|.|+ ++.|.+|+||++|.|+++++|.+++++++ +.|+++++|.+++|+++++|++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~ 61 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGK 61 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECC
Confidence 478899998 78888999999999999999999999998 8999999999999999999998
Q ss_pred CcEEeC
Q 010874 487 DVVIVN 492 (498)
Q Consensus 487 ~~~i~~ 492 (498)
++.+.+
T Consensus 62 ~~~i~~ 67 (79)
T cd05787 62 GCTIPP 67 (79)
T ss_pred CCEECC
Confidence 888764
No 105
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.01 E-value=9.5e-10 Score=101.13 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=53.1
Q ss_pred CCCCCCCCCccCCCeEe-------cCeeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhH
Q 010874 383 PKTPFYTSPRFLPPTKI-------DNCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESE 453 (498)
Q Consensus 383 ~~~~i~~~~~i~~~~~i-------~~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~ 453 (498)
+...+.+++.+.++++| .++.|. +++||++|.|+ ++.|.+|+||++++|++++++.+++++++..+++.+.
T Consensus 22 ~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~ 101 (163)
T cd05636 22 EGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTI 101 (163)
T ss_pred CCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcE
Confidence 33444444444444444 235555 68999999999 8899999999999999999999999998877776654
Q ss_pred H
Q 010874 454 I 454 (498)
Q Consensus 454 ~ 454 (498)
+
T Consensus 102 i 102 (163)
T cd05636 102 T 102 (163)
T ss_pred E
Confidence 3
No 106
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.00 E-value=1.3e-08 Score=96.03 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=77.4
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
+.+|.+||||||.++|| .+|+|++++|+ |||+|+++.|....- .++|....+.+. +. .++
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~---------~~g 61 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YA---------EFG 61 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hh---------ccC
Confidence 56789999999999999 57999999999 999999999987654 555555443221 11 122
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecCH-HHHHHHHHHcC
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDY-MDFIQSHVDRD 241 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~dl-~~ll~~h~~~~ 241 (498)
++++..... + .|...+++.++..+. .+.++++.||+ +...++ ..+.+...+.+
T Consensus 62 ---~~vv~D~~~-------~-~GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 62 ---LPVVPDELP-------G-FGPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred ---CceeecCCC-------C-CCCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 344443221 1 288889998876653 57999999999 444443 55555443333
No 107
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.98 E-value=4.3e-08 Score=97.32 Aligned_cols=214 Identities=14% Similarity=0.149 Sum_probs=129.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecC---CcchhHHHHHHHHHh--------cCCCeEEEEeccCchhHHHHHHhhc
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCIN--------SGINKIFVLTQFNSASLNRHIARTY 163 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~---G~~pLId~~L~~l~~--------sGi~~I~Vv~~~~~~~l~~hl~~~~ 163 (498)
+.+||||||.||||. .+.||+|+||+ |+ |+|++.++++.. .+|..+++...+..+++.+++.+..
T Consensus 1 va~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 1 VAVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred CEEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 358999999999995 68999999999 99 999999999976 3467777777788888999996422
Q ss_pred cCCCC--cCCCCeEEEeccc-CC-CCCCC--CccccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceee-ec-CHHHH
Q 010874 164 FGNGT--NFGDGFVEVLAAT-QT-PGESG--KNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-RM-DYMDF 233 (498)
Q Consensus 164 ~~~~~--~~~~~~V~v~~~~-q~-~~~~~--~~~~~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~GD~l~-~~-dl~~l 233 (498)
+..+. .|..+.+-.+... .. ..+.. .-.+-|.||.+.... ..+++.+....+++.+.+.|.+. .. |. .+
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP-~~ 155 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP-LF 155 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH-HH
Confidence 11110 0111111111110 00 00001 112568888877653 34555445677899999999844 44 43 36
Q ss_pred HHHHHHcCCCeEEEEEecCCCCCCCceEEEECCCCC--EEEEEeCCCcccccc---ccc-cccccCCCccccccCCccee
Q 010874 234 IQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKA---MQV-DTSLLGFSPQEARKCPYVAS 307 (498)
Q Consensus 234 l~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~~gr--V~~~~EKp~~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~~ 307 (498)
+-.+...++++.+-+.+....+ ..-|++...++|+ ++.+.|-|....... ..+ +.+ .......+
T Consensus 156 lG~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~---------~~~~~~~n 225 (266)
T cd04180 156 IGIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDID---------DAPFFLFN 225 (266)
T ss_pred HHHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCC---------ceeeccce
Confidence 6777778888887666554322 2346555432355 555655443221100 000 011 11346789
Q ss_pred eeEEEEcHHHHHHHHH
Q 010874 308 MGVYVFKKDVLFKLLR 323 (498)
Q Consensus 308 ~GIYif~~~vL~~ll~ 323 (498)
+...+|+-+.+.++++
T Consensus 226 ~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 226 TNNLINFLVEFKDRVD 241 (266)
T ss_pred EEEEEEEHHHHHHHHH
Confidence 9999999999887764
No 108
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.98 E-value=3.3e-09 Score=89.72 Aligned_cols=68 Identities=10% Similarity=0.214 Sum_probs=61.3
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCE
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~ 483 (498)
+++||++|.|+ ++.|. +++||++|.||. +|++|++++. +.|+++++|.+++||++++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 68899999998 78886 699999999974 7899999998 8999999999999999999
Q ss_pred ECCCcEEeCCC
Q 010874 484 IGKDVVIVNKD 494 (498)
Q Consensus 484 Ig~~~~i~~~~ 494 (498)
||+++.+.|-.
T Consensus 88 ig~~~~~~~~~ 98 (101)
T cd05635 88 LGAGTNNSDLK 98 (101)
T ss_pred ECCCceecccc
Confidence 99999998754
No 109
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.96 E-value=3.4e-09 Score=96.70 Aligned_cols=92 Identities=14% Similarity=0.281 Sum_probs=64.8
Q ss_pred CCCCCCCCCCccCCCeEe-cCeeee----ceEEcCCCEEC-ceEE-----eccEECCCCEECCCCEEcceEEeCCccccc
Q 010874 382 DPKTPFYTSPRFLPPTKI-DNCRIK----DAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYYQT 450 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i-~~~~I~----~s~Ig~~~~I~-~~~v-----~~siIg~~~~Ig~~~~i~~svi~~~~~~~~ 450 (498)
++...+...+.+++++.| .+|.|. ++.||++|.|+ +|.| .+|+||++|+|+++++|.+++|.++
T Consensus 10 ~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~----- 84 (155)
T cd04745 10 HPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRN----- 84 (155)
T ss_pred CCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCC-----
Confidence 344444444555555555 345554 36788888887 6777 4678888888888888888877777
Q ss_pred hhHHHHhhcCCcccEEeCCCcEEee-eEECCCCEECCCcEEeC
Q 010874 451 ESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 451 ~~~~~s~l~~~~~~v~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~ 492 (498)
+.||.++.|.+ ++|++++.|++++.+..
T Consensus 85 --------------~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~ 113 (155)
T cd04745 85 --------------ALVGMNAVVMDGAVIGEESIVGAMAFVKA 113 (155)
T ss_pred --------------CEECCCCEEeCCCEECCCCEECCCCEeCC
Confidence 78888888864 78888888888877754
No 110
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.91 E-value=4.7e-09 Score=99.03 Aligned_cols=91 Identities=13% Similarity=0.271 Sum_probs=59.3
Q ss_pred CCCCCCCCCccCCCeEec-Ceeee----ceEEcCCCEEC-ceEE-----eccEECCCCEECCCCEEcceEEeCCccccch
Q 010874 383 PKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYYQTE 451 (498)
Q Consensus 383 ~~~~i~~~~~i~~~~~i~-~~~I~----~s~Ig~~~~I~-~~~v-----~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~ 451 (498)
+.+.+...+.+++++.|. +|.|. +.+||++|.|+ +|+| .+|+||++|+|+++|.|.+|+|.++
T Consensus 19 ~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~------ 92 (192)
T TIGR02287 19 PTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN------ 92 (192)
T ss_pred CCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC------
Confidence 333333333344444442 34443 35677777777 6766 4688888888888888888888777
Q ss_pred hHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 452 SEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 452 ~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||.++.|. +++|++++.|++++.+..
T Consensus 93 -------------~~IG~ga~I~~g~~IG~~s~Vgags~V~~ 121 (192)
T TIGR02287 93 -------------ALVGMNAVVMDGAVIGENSIVAASAFVKA 121 (192)
T ss_pred -------------CEECCCcccCCCeEECCCCEEcCCCEECC
Confidence 6777777764 477777777777766654
No 111
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.90 E-value=5.2e-09 Score=84.42 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=56.5
Q ss_pred EcCCCEEC-ceEE-eccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECC
Q 010874 409 ISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (498)
Q Consensus 409 Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~ 486 (498)
|++++.|+ ++.| .+++||++|+||++|+|++++++++ +.|+++++|.+|++++++.|++
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 45666665 5555 4689999999999999999999998 8999999999999999999999
Q ss_pred CcEEeC
Q 010874 487 DVVIVN 492 (498)
Q Consensus 487 ~~~i~~ 492 (498)
++.+.+
T Consensus 63 ~~~~~~ 68 (80)
T cd05824 63 WTRLEN 68 (80)
T ss_pred CcEEec
Confidence 988765
No 112
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=98.90 E-value=6.3e-09 Score=98.27 Aligned_cols=95 Identities=16% Similarity=0.323 Sum_probs=66.0
Q ss_pred CccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH--HHhhcCCcccE
Q 010874 391 PRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPI 465 (498)
Q Consensus 391 ~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~--~s~l~~~~~~v 465 (498)
+.+++++.|. .+.|. +++||+||+|+ ++.|.+++||++|.|++++.|.+++++++..++..+.+ .+.++++ +
T Consensus 16 v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~---~ 92 (193)
T cd03353 16 VEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG---V 92 (193)
T ss_pred eEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC---C
Confidence 3444444442 34444 68999999999 89999999999999999999999999988555554443 2444544 5
Q ss_pred EeCCCcEEeeeEECCCCEECCCc
Q 010874 466 GVGRNTKIRNCIIDKNVKIGKDV 488 (498)
Q Consensus 466 ~Ig~~~~i~~~iI~~~~~Ig~~~ 488 (498)
.|++++.+++++|+++++|+..+
T Consensus 93 ~Ig~~~~i~~s~ig~~~~i~~~~ 115 (193)
T cd03353 93 HIGNFVEIKKSTIGEGSKANHLS 115 (193)
T ss_pred EECCcEEEecceEcCCCEecccc
Confidence 56666666666666655554433
No 113
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.89 E-value=7.9e-09 Score=97.52 Aligned_cols=68 Identities=21% Similarity=0.494 Sum_probs=58.2
Q ss_pred ceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEE-----cceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEee
Q 010874 406 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i-----~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~ 475 (498)
+++||++|.|+ +|+|. ..+||++|.||++|.| .+|+|+++ +.||+++.|.+
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~-------------------~~Ig~~a~I~~ 86 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN-------------------GHVGHGAILHG 86 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC-------------------CEECCCCEEcC
Confidence 78889999998 78776 4699999999999999 56888887 89999999999
Q ss_pred eEECCCCEECCCcEEeC
Q 010874 476 CIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~ 492 (498)
|+|++++.||.++++.+
T Consensus 87 siIg~~~~IG~ga~I~~ 103 (192)
T TIGR02287 87 CIVGRNALVGMNAVVMD 103 (192)
T ss_pred CEECCCCEECCCcccCC
Confidence 99999999988877754
No 114
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.89 E-value=1.6e-08 Score=103.18 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=49.7
Q ss_pred eEeecCCHHHHHHHHHHhhccCCC-ccccCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEE-eccEECCC
Q 010874 354 YWEDIGTIKSFYEANMALTKESPA-FHFYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTV-EHSIVGER 428 (498)
Q Consensus 354 ~w~dIgt~~dy~~An~~ll~~~~~-~~~~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v-~~siIg~~ 428 (498)
.+.-+++|...+..-..++.+.++ ...++|.+.+.+++.+++++.|. ++.|. ++.||++|+|+ ++.| .+++||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 355678887666555555543322 23345555555555555555552 23332 35555555555 4444 24555555
Q ss_pred CEECCCCEEc-ceEEeCCccccc
Q 010874 429 SRLDYGVELK-DTVMLGADYYQT 450 (498)
Q Consensus 429 ~~Ig~~~~i~-~svi~~~~~~~~ 450 (498)
|.|+++|.|. +++|+++..+..
T Consensus 146 ~~I~~~~~I~~~~~IG~~~~I~~ 168 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKNVIIHS 168 (324)
T ss_pred ceECCCcEECCCCEECCCCEECC
Confidence 5555555554 444444433333
No 115
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.88 E-value=1.2e-08 Score=93.05 Aligned_cols=68 Identities=19% Similarity=0.501 Sum_probs=55.7
Q ss_pred ceEEcCCCEEC-ceEEec----cEECCCCEECCCCEE-----cceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEee
Q 010874 406 DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~----siIg~~~~Ig~~~~i-----~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~ 475 (498)
++.||++|+|+ +|.|.. ++||++|.|+++|+| .+++|+++ +.|++++.+.+
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~ 78 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN-------------------GHIGHGAILHG 78 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC-------------------CEECCCcEEEC
Confidence 78899999998 788864 899999999999999 67888887 77777777777
Q ss_pred eEECCCCEECCCcEEeC
Q 010874 476 CIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~ 492 (498)
|+||+++.||.++.|.+
T Consensus 79 ~~Ig~~~~Ig~~~~I~~ 95 (155)
T cd04745 79 CTIGRNALVGMNAVVMD 95 (155)
T ss_pred CEECCCCEECCCCEEeC
Confidence 77777777777776654
No 116
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.87 E-value=4.9e-09 Score=109.46 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=71.1
Q ss_pred CCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeC
Q 010874 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (498)
Q Consensus 390 ~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig 468 (498)
.+.|++++.|.+ .+.+|+||++|.|+ +|.|++|+|+++|+|+++|+|.+|+++++ +.||
T Consensus 293 ~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~-------------------~~i~ 352 (380)
T PRK05293 293 NSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN-------------------AVIG 352 (380)
T ss_pred cCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC-------------------CEEC
Confidence 334555555542 45689999999999 89999999999999999999999999998 8999
Q ss_pred CCcEEee-----eEECCCCEECCCcEEe
Q 010874 469 RNTKIRN-----CIIDKNVKIGKDVVIV 491 (498)
Q Consensus 469 ~~~~i~~-----~iI~~~~~Ig~~~~i~ 491 (498)
+++++++ .+||++++|+++++|.
T Consensus 353 ~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 353 DGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred CCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 9999987 8999999999998873
No 117
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.87 E-value=6.7e-08 Score=99.22 Aligned_cols=109 Identities=8% Similarity=0.064 Sum_probs=76.4
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
.+.+||||||+|+||. .+|.|+|+.|+ ||++|+++.+.. .+++|+|+++... . ..+ . + .
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~-~~~~ViVv~~~~~--~-----~~~-~----~--~ 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAK-YCEQVFLSARPSQ--W-----QGT-P----L--E 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHh-hCCEEEEEeCchH--h-----hhc-c----c--c
Confidence 5789999999999997 48999999999 999999988865 4889988886421 1 000 0 0 0
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecC-HHHHHHHH
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSH 237 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~d-l~~ll~~h 237 (498)
.+.++..... ..|...+|+.++.... .+.++++.||+ +...+ +..+++.+
T Consensus 219 ~v~~I~D~~~--------~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 NLPTLPDRGE--------SVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCeEEeCCCC--------CCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 1233332221 2699999999986542 35789999999 34444 56666654
No 118
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.83 E-value=1.1e-06 Score=92.75 Aligned_cols=351 Identities=15% Similarity=0.175 Sum_probs=192.7
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecC-CcchhHHHHHHHHHh----cCCC-eEEEEeccCc-hhHHHHHHhhc-
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCIN----SGIN-KIFVLTQFNS-ASLNRHIARTY- 163 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~-G~~pLId~~L~~l~~----sGi~-~I~Vv~~~~~-~~l~~hl~~~~- 163 (498)
..++.+|.||||.||||. ..-||.++|+. |+ .++|..++++.. .|.+ ..+|.++++- +...+++.+ |
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k-~~ 151 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK-YT 151 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH-cC
Confidence 477899999999999998 47899999995 56 899999888764 3432 3477777654 557777753 4
Q ss_pred -cCCCC-cCCCCeEEEec-ccCC----CC-CCCCcc-ccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceeeecCHHH
Q 010874 164 -FGNGT-NFGDGFVEVLA-ATQT----PG-ESGKNW-FQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRMDYMD 232 (498)
Q Consensus 164 -~~~~~-~~~~~~V~v~~-~~q~----~~-~~~~~~-~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ 232 (498)
+.... -|.+..+-.+. .... .+ .....| +.|.||....... .+++......+++.+.+.|.+...-=-.
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~ 231 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK 231 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH
Confidence 21111 01111111111 0000 00 011124 4677777665532 3444445677999999999976432245
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCceEEE-ECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEE
Q 010874 233 FIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 311 (498)
Q Consensus 233 ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~-~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIY 311 (498)
++..|.++++++++=+.+...++. +-|.+. .|..-+++.+.|-|...... .+ + .....+.+++.+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d~-kgG~l~~~dgk~~lvEysqvp~e~~~~---f~-~---------~~kf~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLADV-KGGTLISYEGKVQLLEIAQVPDEHVNE---FK-S---------IEKFKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCCC-CccEEEEECCEEEEEEEecCCHHHHHh---hc-c---------cccceeeeeeeE
Confidence 788888899998887665443222 235443 34333577777766543210 00 0 112468899999
Q ss_pred EEcHHHHHHHHHhhCC--------CCCc---h--hhhhHHHHhhc-CceEEEEEc-ceEeecCCHHHHHHHHHHhhccCC
Q 010874 312 VFKKDVLFKLLRWRYP--------TSND---F--GSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKESP 376 (498)
Q Consensus 312 if~~~vL~~ll~~~~~--------~~~d---f--~~dii~~~i~~-~~I~~~~~~-~~w~dIgt~~dy~~An~~ll~~~~ 376 (498)
.|+-+.|.++++.... ...+ + .+-++-.+++- .+..++.++ ..+..+.+..|++.+..++.....
T Consensus 298 w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~ 377 (469)
T PLN02474 298 WVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVD 377 (469)
T ss_pred EEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhcc
Confidence 9999999887653210 0001 0 00112222222 234444443 236778888888888887765432
Q ss_pred CccccCCCCCCCCCC--ccCCCe-EecC--eeeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccch
Q 010874 377 AFHFYDPKTPFYTSP--RFLPPT-KIDN--CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE 451 (498)
Q Consensus 377 ~~~~~~~~~~i~~~~--~i~~~~-~i~~--~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~ 451 (498)
..-...+.....+.+ .+.|.- ++.+ .++. +--..++ ..+=.|--++..|.++++++.++..+
T Consensus 378 ~~l~~~~~~~~~~~p~IeL~~~f~~v~~f~~rf~----~iPsl~~---~d~LtV~Gdv~fG~~v~l~G~v~i~~------ 444 (469)
T PLN02474 378 GFVIRNKARTNPSNPSIELGPEFKKVANFLSRFK----SIPSIVE---LDSLKVSGDVWFGSGIVLKGKVTITA------ 444 (469)
T ss_pred CeEEecCcccCCCCCcEEECcccccHHhHHHhcC----CCCCccc---CCeEEEeeeeEECCCcEEEEEEEEEc------
Confidence 221111111111111 111110 1110 1111 1111121 11235566788888888888888766
Q ss_pred hHHHHhhcCCcccEEeCCCcEEeeeEECCCC
Q 010874 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (498)
Q Consensus 452 ~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~ 482 (498)
++..+..|.+|+++.|++|..+.
T Consensus 445 --------~~~~~~~ip~g~~l~~~~~~~~~ 467 (469)
T PLN02474 445 --------KSGVKLEIPDGAVLENKDINGPE 467 (469)
T ss_pred --------CCCCeeecCCCcEecceeecccC
Confidence 23345789999999888776553
No 119
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.82 E-value=2.7e-08 Score=94.22 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=35.6
Q ss_pred ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 422 ~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+|+||+++.||+++.|.+++|.++ +.||.++.|. +++||+++.|++++.+..
T Consensus 71 ~siIg~~~~Ig~~a~i~g~vIG~~-------------------v~IG~ga~V~~g~~IG~~s~Vgags~V~~ 123 (196)
T PRK13627 71 DTIVGENGHIGHGAILHGCVIGRD-------------------ALVGMNSVIMDGAVIGEESIVAAMSFVKA 123 (196)
T ss_pred CCEECCCCEECCCcEEeeEEECCC-------------------CEECcCCccCCCcEECCCCEEcCCCEEeC
Confidence 466677777776666666666655 6777777663 477777777777777654
No 120
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.81 E-value=2e-08 Score=92.55 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=58.2
Q ss_pred CCCCCCCCCCccCCCeEec-Ceeee----ceEEcCCCEEC-ceEEecc-----------EECCCCEECCCCEEcceEEeC
Q 010874 382 DPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVEHS-----------IVGERSRLDYGVELKDTVMLG 444 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~-~~~I~----~s~Ig~~~~I~-~~~v~~s-----------iIg~~~~Ig~~~~i~~svi~~ 444 (498)
++.+.+.....+++++.|. ++.|. +++||++|.|+ ++.|.++ .||+++.|+.+++|.+++|.+
T Consensus 9 ~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd 88 (164)
T cd04646 9 CQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGN 88 (164)
T ss_pred CCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECC
Confidence 3333344444455555552 35552 46788888887 7777643 577777777788887777777
Q ss_pred CccccchhHHHHhhcCCcccEEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 445 ADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 445 ~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
+ +.||.++.| .+++|++++.||++++|..
T Consensus 89 ~-------------------~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~ 118 (164)
T cd04646 89 N-------------------NVFESKSFVGKNVIITDGCIIGAGCKLPS 118 (164)
T ss_pred C-------------------CEEeCCCEECCCCEECCCCEEeCCeEECC
Confidence 6 666666666 3566666666666666654
No 121
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=98.81 E-value=4.9e-08 Score=97.54 Aligned_cols=42 Identities=12% Similarity=0.017 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHHHhhccCCC-cc------ccCCCCCCCCCCccCCCeEe
Q 010874 358 IGTIKSFYEANMALTKESPA-FH------FYDPKTPFYTSPRFLPPTKI 399 (498)
Q Consensus 358 Igt~~dy~~An~~ll~~~~~-~~------~~~~~~~i~~~~~i~~~~~i 399 (498)
..+|.-.+.....++.+.+. +. .+++.+.+..++.++++++|
T Consensus 78 ~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI 126 (338)
T COG1044 78 VKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVI 126 (338)
T ss_pred eCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEE
Confidence 45577667766666654322 22 33444444444444444444
No 122
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.80 E-value=7.5e-08 Score=90.72 Aligned_cols=121 Identities=20% Similarity=0.229 Sum_probs=80.5
Q ss_pred ceEeecCCHHHHHHHHHHhhccC-CCccccCCCCCCCCCCccCCCeEe-cCeeee-ceEEcCCCEEC-ceEEe-ccEECC
Q 010874 353 DYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKI-DNCRIK-DAIISHGCFLR-ECTVE-HSIVGE 427 (498)
Q Consensus 353 ~~w~dIgt~~dy~~An~~ll~~~-~~~~~~~~~~~i~~~~~i~~~~~i-~~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~ 427 (498)
.++..++.++...+....+.+.. +...++.+...+.+.+.+++++.| .++.|. ++.||++|.|+ ++.|. +++||+
T Consensus 61 ~~iiai~~~~~~~~i~~~l~~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~ 140 (201)
T TIGR03570 61 DLVVAIGDNKLRRRLFEKLKAKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGD 140 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECC
Confidence 45666776666666655554432 222334444555555566666666 345554 47777777776 67774 578888
Q ss_pred CCEECCCCEEcc-eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 428 RSRLDYGVELKD-TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 428 ~~~Ig~~~~i~~-svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+++|+.++.|.+ +.+.++ +.||.++.+. ++.|++++.|++++++.+
T Consensus 141 ~~~i~~~~~i~~~~~ig~~-------------------~~ig~~~~v~~~~~i~~~~~i~~~~~v~~ 188 (201)
T TIGR03570 141 YVHIAPGVTLSGGVVIGEG-------------------VFIGAGATIIQGVTIGAGAIVGAGAVVTK 188 (201)
T ss_pred CCEECCCCEEeCCcEECCC-------------------CEECCCCEEeCCCEECCCCEECCCCEECC
Confidence 888888877764 444444 7899888885 689999999999999865
No 123
>PLN02472 uncharacterized protein
Probab=98.80 E-value=2.3e-08 Score=97.80 Aligned_cols=68 Identities=6% Similarity=0.184 Sum_probs=53.8
Q ss_pred eEEcCCCEEC-ceEEe-----------ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEE-
Q 010874 407 AIISHGCFLR-ECTVE-----------HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI- 473 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-----------~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i- 473 (498)
.+||++|.|+ +|.|. +++||++|+||++|.|.+|+|.++ +.||.++.|
T Consensus 99 I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~-------------------v~IG~~svI~ 159 (246)
T PLN02472 99 ITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPE-------------------CIIGQHSILM 159 (246)
T ss_pred eEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCC-------------------CEECCCCEEC
Confidence 5667777777 66662 689999999999999999988888 788888877
Q ss_pred eeeEECCCCEECCCcEEeCC
Q 010874 474 RNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 474 ~~~iI~~~~~Ig~~~~i~~~ 493 (498)
.+++|++++.|++++.+...
T Consensus 160 ~gavIg~~~~Ig~gsvV~~g 179 (246)
T PLN02472 160 EGSLVETHSILEAGSVLPPG 179 (246)
T ss_pred CCCEECCCCEECCCCEECCC
Confidence 46788888888888777643
No 124
>PLN02296 carbonate dehydratase
Probab=98.79 E-value=4.2e-08 Score=97.17 Aligned_cols=95 Identities=13% Similarity=0.278 Sum_probs=65.1
Q ss_pred ccCCCCCCCCCCccCCCeEe-cCeeee----ceEEcCCCEEC-ceEEe-----------ccEECCCCEECCCCEEcceEE
Q 010874 380 FYDPKTPFYTSPRFLPPTKI-DNCRIK----DAIISHGCFLR-ECTVE-----------HSIVGERSRLDYGVELKDTVM 442 (498)
Q Consensus 380 ~~~~~~~i~~~~~i~~~~~i-~~~~I~----~s~Ig~~~~I~-~~~v~-----------~siIg~~~~Ig~~~~i~~svi 442 (498)
++++.+.+...+.|++++.| .+|.|. +++||++|.|+ +|.|. +|+||++|+||++|.|.+++|
T Consensus 60 ~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~I 139 (269)
T PLN02296 60 FVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTV 139 (269)
T ss_pred EECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEE
Confidence 33444444444445555555 245554 35788888888 77773 578999999999999988888
Q ss_pred eCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 010874 443 LGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 443 ~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 493 (498)
.++ +.||.++.|. ++.|++++.|++++.|...
T Consensus 140 gd~-------------------v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~ 172 (269)
T PLN02296 140 EDE-------------------AFVGMGATLLDGVVVEKHAMVAAGALVRQN 172 (269)
T ss_pred CCC-------------------cEECCCcEECCCeEECCCCEECCCCEEecC
Confidence 877 6777777764 5777777777777777654
No 125
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.79 E-value=1.5e-08 Score=108.35 Aligned_cols=96 Identities=18% Similarity=0.295 Sum_probs=68.2
Q ss_pred CCccCCCeEec-Ceeee-------ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH--HHhh
Q 010874 390 SPRFLPPTKID-NCRIK-------DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLL 458 (498)
Q Consensus 390 ~~~i~~~~~i~-~~~I~-------~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~--~s~l 458 (498)
++.+++++.|+ ++.|. +++||+||.|+ +|.|++|+||++|+|+++|.|.+++|+++..+++++.+ .+.+
T Consensus 263 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i 342 (456)
T PRK14356 263 SVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVL 342 (456)
T ss_pred cEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEE
Confidence 34556666774 46664 47899999998 88999999999999999999999999988666665554 3445
Q ss_pred cCCcccEEeCCCcEEeeeEECCCCEECCCc
Q 010874 459 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 488 (498)
Q Consensus 459 ~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~ 488 (498)
+++ +.||+++.+.+++|+++++|+.++
T Consensus 343 g~~---~~ig~~~~i~~~~i~~~~~i~~~~ 369 (456)
T PRK14356 343 EEG---ARVGNFVEMKKAVLGKGAKANHLT 369 (456)
T ss_pred CCC---CEecCCceeeeeEecCCcEecccc
Confidence 555 566666666666666665554443
No 126
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.78 E-value=1.7e-08 Score=107.65 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=62.9
Q ss_pred ccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH---------HHhhc
Q 010874 392 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI---------ASLLA 459 (498)
Q Consensus 392 ~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~---------~s~l~ 459 (498)
.|+++++|+ .+.|. +++||++|.|+ ++.+.+++|++++.|+.++.+.+++|.++..++..+.+ .+.++
T Consensus 305 ~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig 384 (446)
T PRK14353 305 HVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIG 384 (446)
T ss_pred EECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEEC
Confidence 334444442 34554 68899999999 78889999999999999999998888888766665433 22333
Q ss_pred CCcccEEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 460 EGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 460 ~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
++ +.||.++.|. ++.||+++.||+++++.
T Consensus 385 ~~---~~ig~~~~i~~~~~Ig~~~~ig~~s~v~ 414 (446)
T PRK14353 385 AG---AFIGSNSALVAPVTIGDGAYIASGSVIT 414 (446)
T ss_pred CC---cEECCCCEEeCCCEECCCCEECCCCEEC
Confidence 33 3444444332 45555555555555554
No 127
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.77 E-value=3.5e-08 Score=90.00 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=64.8
Q ss_pred ccCCCCCCCCCCccCCCeEec-Ceeeec----eEEcCCCEEC-ceEEec-----cEECCCCEECCCCEEcceEEeCCccc
Q 010874 380 FYDPKTPFYTSPRFLPPTKID-NCRIKD----AIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADYY 448 (498)
Q Consensus 380 ~~~~~~~i~~~~~i~~~~~i~-~~~I~~----s~Ig~~~~I~-~~~v~~-----siIg~~~~Ig~~~~i~~svi~~~~~~ 448 (498)
++++.+.+...+.+++++.|. ++.|.. ++||++|.|+ +|.|.+ ++||+++.|+++++|.+++|.++
T Consensus 8 ~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~--- 84 (154)
T cd04650 8 YVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY--- 84 (154)
T ss_pred EECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC---
Confidence 344444444445555556553 455553 4888888888 777764 78899999998888888887777
Q ss_pred cchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 449 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 449 ~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+.|+.++.+. +++|++++.|++++.+..
T Consensus 85 ----------------~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~ 113 (154)
T cd04650 85 ----------------VIVGMGAILLNGAKIGDHVIIGAGAVVTP 113 (154)
T ss_pred ----------------CEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 6777777663 567777777777766654
No 128
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.77 E-value=6.9e-08 Score=99.53 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=45.2
Q ss_pred ecCCHHH-HHHHHHHhhccC--CCccccCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCC
Q 010874 357 DIGTIKS-FYEANMALTKES--PAFHFYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERS 429 (498)
Q Consensus 357 dIgt~~d-y~~An~~ll~~~--~~~~~~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~ 429 (498)
-+++|.. |..+...+..+. .....+++.+.+.+++.++++++|. ++.|. ++.||++|+|+ ++.|. ++.||++|
T Consensus 76 ~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 155 (343)
T PRK00892 76 VVKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADC 155 (343)
T ss_pred EeCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCC
Confidence 3567664 444544443222 1123455555565555555555553 34443 35555555555 44442 45555555
Q ss_pred EECCCCEEcceE-EeCCccccc
Q 010874 430 RLDYGVELKDTV-MLGADYYQT 450 (498)
Q Consensus 430 ~Ig~~~~i~~sv-i~~~~~~~~ 450 (498)
.|+++|.|.+.+ |+++..+.+
T Consensus 156 ~I~~~~~I~~~~~Ig~~~~I~~ 177 (343)
T PRK00892 156 RLHANVTIYHAVRIGNRVIIHS 177 (343)
T ss_pred EeCCCeEEcCCCEECCCCEECC
Confidence 555555554333 444433333
No 129
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.77 E-value=3e-07 Score=86.06 Aligned_cols=220 Identities=17% Similarity=0.189 Sum_probs=138.1
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
|++..|||+|-|.++|..- |-+.+++|+ |||.|+++++.+++ +++|+|-+ .++.+.+.- +. |
T Consensus 1 ~~~~iAiIpAR~gSKgI~~------KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A-~~-------y 63 (228)
T COG1083 1 MMKNIAIIPARGGSKGIKN------KNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEA-KK-------Y 63 (228)
T ss_pred CcceEEEEeccCCCCcCCc------cchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHH-HH-------h
Confidence 3556799999999999864 999999999 99999999999997 57776655 445554333 23 3
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~ 248 (498)
|. .+.+..+.....+ ...|-+++.++.+.+. ...+.++++.+-. +...++++.++.+.+...+..+.+
T Consensus 64 ga-k~~~~Rp~~LA~D-----~ast~~~~lh~le~~~----~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa 133 (228)
T COG1083 64 GA-KVFLKRPKELASD-----RASTIDAALHALESFN----IDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSA 133 (228)
T ss_pred Cc-cccccCChhhccC-----chhHHHHHHHHHHHhc----cccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEE
Confidence 31 1222222111110 0234455666655553 2334577777665 556789999999999888888888
Q ss_pred EecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC
Q 010874 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (498)
Q Consensus 249 ~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~ 328 (498)
.+.+.. .|-.... .+|.+..+.|.|..... +.-....+..+..+|+++++.|.+ .
T Consensus 134 ~e~e~~---p~k~f~~-~~~~~~~~~~~~~~~~r--------------rQ~Lpk~Y~~NgaiYi~~~~~l~e---~---- 188 (228)
T COG1083 134 VECEHH---PYKAFSL-NNGEVKPVNEDPDFETR--------------RQDLPKAYRENGAIYINKKDALLE---N---- 188 (228)
T ss_pred eecccc---hHHHHHh-cCCceeecccCCccccc--------------cccchhhhhhcCcEEEehHHHHhh---c----
Confidence 887641 1211122 34777777666532110 000112467788999999998853 1
Q ss_pred CCchhhhhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHHhhc
Q 010874 329 SNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 329 ~~df~~dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~ll~ 373 (498)
...|. .+...|..+. -..||++..||..|+..+..
T Consensus 189 ~~~f~----------~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 189 DCFFI----------PNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred Cceec----------CCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 11121 2344555553 36799999999999987754
No 130
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.76 E-value=6.5e-07 Score=95.29 Aligned_cols=215 Identities=19% Similarity=0.232 Sum_probs=128.0
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecC---CcchhHHHHHHHHHhc------------C-CCeEEEEe-ccCchhH
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS------------G-INKIFVLT-QFNSASL 155 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~---G~~pLId~~L~~l~~s------------G-i~~I~Vv~-~~~~~~l 155 (498)
.++.+||||||.||||+ ...||+|+||+ |+ ||+++.++++... + .-.++|++ .+..+.+
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 45999999999999996 58999999995 88 9999999999864 1 12455555 4777888
Q ss_pred HHHHHhh-ccCCCCc----CCCCeEEEeccc-CCC--CCCC-C-ccccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCc
Q 010874 156 NRHIART-YFGNGTN----FGDGFVEVLAAT-QTP--GESG-K-NWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGD 223 (498)
Q Consensus 156 ~~hl~~~-~~~~~~~----~~~~~V~v~~~~-q~~--~~~~-~-~~~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~GD 223 (498)
.+++.+. ||+.... |..+.+-.+... -.. .+.. - ..+.|.|+..+.... .+++......+++.+.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 8888642 3432110 111111111100 000 0000 0 124688887776532 3555555677999999999
Q ss_pred eee-ecCHHHHHHHHHHcCC-CeEEEEEecCCCCCCCceEEEE-CCCCCEEEEEeCCCccccccccccccccCCCccccc
Q 010874 224 HLY-RMDYMDFIQSHVDRDA-DITISCAAVGESRASDYGLVKI-DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300 (498)
Q Consensus 224 ~l~-~~dl~~ll~~h~~~~a-d~tv~~~~~~~~~~~~~g~v~~-d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~ 300 (498)
.+. ..---.++-.+.+.++ ++.-.+.+... ...-|++.. |..-.|+.+.|-+...... ..-+++.+
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~-~~~~~g~l-------- 329 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNN-DELLTGEL-------- 329 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhc-ccccCCee--------
Confidence 974 3322456777777777 65544443322 133466543 4333678887765432210 00001111
Q ss_pred cCCcceeeeEEEEcHHHHHHHHH
Q 010874 301 KCPYVASMGVYVFKKDVLFKLLR 323 (498)
Q Consensus 301 ~~~~l~~~GIYif~~~vL~~ll~ 323 (498)
.....++..++|+.++|.++++
T Consensus 330 -~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 -AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred -cccccceEEEEEEHHHHHHHhh
Confidence 1256788999999999987653
No 131
>PLN02296 carbonate dehydratase
Probab=98.76 E-value=3.8e-08 Score=97.49 Aligned_cols=86 Identities=12% Similarity=0.316 Sum_probs=62.8
Q ss_pred CCCCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEc-----------ceEEeCCcc
Q 010874 384 KTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELK-----------DTVMLGADY 447 (498)
Q Consensus 384 ~~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~-----------~svi~~~~~ 447 (498)
...+..++.+.|.+++.+ ++.||++|.|. +|.|. +.+||++|.|+++|.|. +++|+++
T Consensus 52 ~p~I~~~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~-- 125 (269)
T PLN02296 52 APVVDKDAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDN-- 125 (269)
T ss_pred CCccCCCCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCC--
Confidence 334555566666665543 67788888887 77765 34899999999999995 5667766
Q ss_pred ccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 448 YQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 448 ~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||++|.|.+|+|++++.||.+++|.+
T Consensus 126 -----------------v~IG~~avI~g~~Igd~v~IG~ga~I~~ 153 (269)
T PLN02296 126 -----------------VTIGHSAVLHGCTVEDEAFVGMGATLLD 153 (269)
T ss_pred -----------------CEECCCceecCCEECCCcEECCCcEECC
Confidence 7888888888888888887777777754
No 132
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.75 E-value=3.7e-08 Score=89.60 Aligned_cols=92 Identities=11% Similarity=0.165 Sum_probs=64.0
Q ss_pred CCCCCCCCCCccCCCeEec-Ceeee----ceEEcCCCEEC-ceEEec-----cEECCCCEECCCCEEcceEEeCCccccc
Q 010874 382 DPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADYYQT 450 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~-~~~I~----~s~Ig~~~~I~-~~~v~~-----siIg~~~~Ig~~~~i~~svi~~~~~~~~ 450 (498)
++.+.+.....+++++.|. +++|. +++||++|.|+ +|.|.. ++||++|.|+.+|.|.+++++++
T Consensus 9 ~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~----- 83 (153)
T cd04645 9 APNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN----- 83 (153)
T ss_pred CCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC-----
Confidence 3343333344455555553 35554 46889999998 788875 59999999999999988888877
Q ss_pred hhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 451 ESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 451 ~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+.|+.++.+. +++|++++.|++++.+..
T Consensus 84 --------------~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~ 112 (153)
T cd04645 84 --------------CLIGMGAIILDGAVIGKGSIVAAGSLVPP 112 (153)
T ss_pred --------------CEECCCCEEcCCCEECCCCEECCCCEECC
Confidence 6777777775 667777777777766643
No 133
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.75 E-value=1.3e-08 Score=108.50 Aligned_cols=86 Identities=20% Similarity=0.229 Sum_probs=64.5
Q ss_pred CeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeE
Q 010874 401 NCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCI 477 (498)
Q Consensus 401 ~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~i 477 (498)
++.|.+++||++|.|+ ++.|. +++||++|+||+++++.++.++.+..+...+.+ + + +.||+++.|+ +++
T Consensus 308 ~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i----~-~---~~Ig~~~~ig~~~~ 379 (451)
T TIGR01173 308 YSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYL----G-D---AEIGSNVNIGAGTI 379 (451)
T ss_pred ecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcEecceeeE----e-e---eEEcCCcEECCCeE
Confidence 3555678899999998 78886 799999999999999999999887555443322 1 1 6777777775 455
Q ss_pred ECC-------CCEECCCcEEeCCC
Q 010874 478 IDK-------NVKIGKDVVIVNKD 494 (498)
Q Consensus 478 I~~-------~~~Ig~~~~i~~~~ 494 (498)
+.. ++.||+++.|....
T Consensus 380 ~~~~~~~~~~~~~Igd~~~ig~~~ 403 (451)
T TIGR01173 380 TCNYDGANKHKTIIGDGVFIGSNT 403 (451)
T ss_pred EeCcccccCCCCEECCCcEECCCC
Confidence 543 58999999998754
No 134
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.74 E-value=3.5e-08 Score=85.44 Aligned_cols=84 Identities=14% Similarity=0.255 Sum_probs=56.4
Q ss_pred ceEEcCCCEEC-ceEE-eccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCC
Q 010874 406 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNV 482 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~ 482 (498)
+++||++|.|+ ++.| .+++||++|.|++++.|.++.+.+...+.......+.++++ +.||+++.+. +++|++++
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~---~~Ig~~~~v~~~~~ig~~~ 92 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRG---ASIGANATILPGVTIGEYA 92 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCC---cEECcCCEEeCCcEECCCC
Confidence 67888888888 6777 47888888888888888776554432111111113344444 6777777774 48888888
Q ss_pred EECCCcEEeC
Q 010874 483 KIGKDVVIVN 492 (498)
Q Consensus 483 ~Ig~~~~i~~ 492 (498)
.|++++.+..
T Consensus 93 ~i~~~~~v~~ 102 (119)
T cd03358 93 LVGAGAVVTK 102 (119)
T ss_pred EEccCCEEeC
Confidence 8888888864
No 135
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.74 E-value=4.5e-08 Score=89.51 Aligned_cols=99 Identities=12% Similarity=0.233 Sum_probs=76.5
Q ss_pred ccCCCCCCCCCCccCCCeEec-Ceeee----ceEEcCCCEEC-ceEEe-----ccEECCCCEECCCCEEcceEEeCCccc
Q 010874 380 FYDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKDTVMLGADYY 448 (498)
Q Consensus 380 ~~~~~~~i~~~~~i~~~~~i~-~~~I~----~s~Ig~~~~I~-~~~v~-----~siIg~~~~Ig~~~~i~~svi~~~~~~ 448 (498)
|++|.+.+..++++++.+.|. ++.++ +-.||++|.|+ +|+|. .+.||++|+||++|.|.+|.|.++
T Consensus 19 ~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~--- 95 (176)
T COG0663 19 FVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDN--- 95 (176)
T ss_pred EECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCC---
Confidence 455555555555555555553 34442 57888888888 67663 579999999999999999999988
Q ss_pred cchhHHHHhhcCCcccEEeCCCcEEee-eEECCCCEECCCcEEeCCCCCC
Q 010874 449 QTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDESP 497 (498)
Q Consensus 449 ~~~~~~~s~l~~~~~~v~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~ 497 (498)
+.||-|+.|-| |.||++|.||+|+.+...+.+|
T Consensus 96 ----------------~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p 129 (176)
T COG0663 96 ----------------VLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIP 129 (176)
T ss_pred ----------------cEEecCceEeCCcEECCCcEEccCCcccCCcCCC
Confidence 89999998876 9999999999999998766543
No 136
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.73 E-value=1.5e-08 Score=109.16 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=77.5
Q ss_pred CCCCCCCccCCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HHhhcC
Q 010874 385 TPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLAE 460 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s~l~~ 460 (498)
..+...+.+++++.|+ +|.|.+|+|+++|.|+ ++.|.+++||+++.|++++.|. ++++.++..+++++++ .+.+..
T Consensus 283 ~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~ 362 (481)
T PRK14358 283 VLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDA 362 (481)
T ss_pred cEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecC
Confidence 3333344445555552 4777789999999999 8888899999999999999986 6777777777776654 222222
Q ss_pred Cc--------ccEEeCCCcEEe-eeEECC-------CCEECCCcEEeCCCC
Q 010874 461 GK--------VPIGVGRNTKIR-NCIIDK-------NVKIGKDVVIVNKDE 495 (498)
Q Consensus 461 ~~--------~~v~Ig~~~~i~-~~iI~~-------~~~Ig~~~~i~~~~~ 495 (498)
+. ..+.||++|.|+ +++|+. ++.||+++.|.....
T Consensus 363 ~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~ 413 (481)
T PRK14358 363 GVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTT 413 (481)
T ss_pred CcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCE
Confidence 21 127788888886 566653 579999999987653
No 137
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.73 E-value=3.8e-08 Score=83.64 Aligned_cols=90 Identities=9% Similarity=0.123 Sum_probs=69.2
Q ss_pred CCCCCCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcC
Q 010874 382 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAE 460 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~ 460 (498)
.+...+ ..+.+++++.|+++.|.+|+|+++|.|+ ++.|.+|+|+++++||++++|.++++.++
T Consensus 5 ~~~~~i-~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~--------------- 68 (104)
T cd04651 5 GRRGEV-KNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKN--------------- 68 (104)
T ss_pred cCCCEE-EeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCC---------------
Confidence 344444 3456788888888889999999999999 89999999999999999999999998887
Q ss_pred CcccEEeCCCcEEeeeEEC---CCCEECCCcEEe
Q 010874 461 GKVPIGVGRNTKIRNCIID---KNVKIGKDVVIV 491 (498)
Q Consensus 461 ~~~~v~Ig~~~~i~~~iI~---~~~~Ig~~~~i~ 491 (498)
+.||+++++.+..-. ++....++.++.
T Consensus 69 ----~~Ig~~~~v~~~~~~~~~~~~~~~~~~~~~ 98 (104)
T cd04651 69 ----VVIPDGVVIGGDPEEDRARFYVTEDGIVVV 98 (104)
T ss_pred ----CEECCCCEECCCcccccccceEcCCeEEEE
Confidence 889998888755211 234444444443
No 138
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.73 E-value=7.4e-08 Score=87.84 Aligned_cols=68 Identities=16% Similarity=0.305 Sum_probs=58.0
Q ss_pred ceEEcCCCEEC-ceEEecc----EECCCCEECCCCEEcc-----eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEee
Q 010874 406 DAIISHGCFLR-ECTVEHS----IVGERSRLDYGVELKD-----TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~s----iIg~~~~Ig~~~~i~~-----svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~ 475 (498)
++.||++|.|+ ++.|..+ +||++|.|+++|.|.. ++|+++ +.|++++.+.+
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~~ 78 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY-------------------VTIGHNAVVHG 78 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC-------------------CEECCCcEEEC
Confidence 68899999998 7888754 9999999999999986 677776 88999998888
Q ss_pred eEECCCCEECCCcEEeC
Q 010874 476 CIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~ 492 (498)
++|++++.||.++.+.+
T Consensus 79 ~~Ig~~~~Ig~~~~i~~ 95 (154)
T cd04650 79 AKVGNYVIVGMGAILLN 95 (154)
T ss_pred cEECCCCEEcCCCEEeC
Confidence 89998888888888754
No 139
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.73 E-value=4.3e-08 Score=93.50 Aligned_cols=57 Identities=12% Similarity=0.321 Sum_probs=39.8
Q ss_pred CCCCCCCCCCccCCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcc
Q 010874 382 DPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD 439 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~ 439 (498)
++.+.+. .+.+++++.|+ +|.|.+++||++|+|+ ++.+.+++||++|.|++++.|..
T Consensus 12 ~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 12 HPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred CCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 3444442 34566666664 4777778888888888 77777888888888888887764
No 140
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.72 E-value=4.5e-08 Score=95.90 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=15.3
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
|.||.+|.|. +++|++++.||+|++|.
T Consensus 180 v~IGa~a~I~~GV~IG~gavIGaGavI~ 207 (269)
T TIGR00965 180 CFIGARSEIVEGVIVEEGSVISMGVFIG 207 (269)
T ss_pred CEECCCCEEcCCCEECCCCEEeCCCEEC
Confidence 5566555553 45556666666555553
No 141
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=98.71 E-value=5.6e-08 Score=96.01 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=19.0
Q ss_pred ceEEcCCCEEC-ceEEe-------------ccEECCCCEECCCCEEc
Q 010874 406 DAIISHGCFLR-ECTVE-------------HSIVGERSRLDYGVELK 438 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-------------~siIg~~~~Ig~~~~i~ 438 (498)
++.||++|.|+ ++.|. +++||++|.|+++|+|.
T Consensus 47 ~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~ 93 (254)
T cd03351 47 PTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIH 93 (254)
T ss_pred CeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEe
Confidence 35555555555 45553 45666666666666664
No 142
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.70 E-value=9.4e-08 Score=88.31 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=45.4
Q ss_pred eEEcCCCEEC-ceEEe-----ccEECCCCEECCCCEEcc-eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEEC
Q 010874 407 AIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKD-TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-----~siIg~~~~Ig~~~~i~~-svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~ 479 (498)
+.||++|.|+ ++.|. ++.||++|.|++++.|.+ +++.++ +.||.++.|.++.||
T Consensus 43 v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~-------------------~~Ig~~~~I~~~~Ig 103 (167)
T cd00710 43 IIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN-------------------CFIGFRSVVFNAKVG 103 (167)
T ss_pred EEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC-------------------CEECCCCEEECCEEC
Confidence 6777777777 66663 467777777777777765 555555 666767766667777
Q ss_pred CCCEECCCcEEe
Q 010874 480 KNVKIGKDVVIV 491 (498)
Q Consensus 480 ~~~~Ig~~~~i~ 491 (498)
+++.||.++.|.
T Consensus 104 ~~~~Ig~~s~i~ 115 (167)
T cd00710 104 DNCVIGHNAVVD 115 (167)
T ss_pred CCCEEcCCCEEe
Confidence 777777766664
No 143
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.70 E-value=5.9e-08 Score=96.23 Aligned_cols=56 Identities=16% Similarity=0.338 Sum_probs=27.4
Q ss_pred CCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 383 PKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 383 ~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
|.+.+.+++.+++++.|+ .|.|. ++.||++|.|+ +++|. +++||++|+|+++|.|.
T Consensus 7 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig 66 (262)
T PRK05289 7 PTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIG 66 (262)
T ss_pred CCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceec
Confidence 333344444444444442 23332 45555555555 45453 45666666666666664
No 144
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=98.68 E-value=7e-08 Score=96.42 Aligned_cols=90 Identities=20% Similarity=0.309 Sum_probs=46.1
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeC--------------CccccchhHH--HHhhcCCc-ccEE
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLG--------------ADYYQTESEI--ASLLAEGK-VPIG 466 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~--------------~~~~~~~~~~--~s~l~~~~-~~v~ 466 (498)
++.||++|+|. +++|. ++.||++|.|++|++|....... ...+++++|+ ++.+..|. -.+.
T Consensus 147 ~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTv 226 (338)
T COG1044 147 NVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTV 226 (338)
T ss_pred CcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceeccccccCce
Confidence 56666666666 56664 47777777777777775332211 1223333444 11121110 0034
Q ss_pred eCCCcEEee-eEECCCCEECCCcEEeCCCC
Q 010874 467 VGRNTKIRN-CIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 467 Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~ 495 (498)
||++++|.| +-|+.||+||++|.|.+.-|
T Consensus 227 Ig~~~kIdN~vqIaHnv~IG~~~~I~~~vg 256 (338)
T COG1044 227 IGEGVKIDNLVQIGHNVRIGEHCIIAGQVG 256 (338)
T ss_pred ecCCcEEcceeEEccccEECCCcEEeccce
Confidence 555555543 34666666666666665443
No 145
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.67 E-value=1.1e-07 Score=90.73 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=48.5
Q ss_pred CCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH
Q 010874 394 LPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI 454 (498)
Q Consensus 394 ~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~ 454 (498)
++++.|+ .+.|.++.||++|+|+ +|.|.+++||++|.|+++|.|.+++|++...+...+.+
T Consensus 6 ~~~~~I~~~a~i~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I 68 (204)
T TIGR03308 6 SPEPTLHPTAELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRI 68 (204)
T ss_pred CCCCeECCCcEEeccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEE
Confidence 3444553 4666678999999999 89999999999999999999998888877776666533
No 146
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.67 E-value=1.2e-07 Score=89.86 Aligned_cols=68 Identities=21% Similarity=0.444 Sum_probs=53.8
Q ss_pred ceEEcCCCEEC-ceEEec----cEECCCCEECCCCEEcc-----eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEee
Q 010874 406 DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELKD-----TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~----siIg~~~~Ig~~~~i~~-----svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~ 475 (498)
+++||++|.|+ +|+|.. .+||++|.||++|.|.. ++++++ +.||+++.+.+
T Consensus 28 ~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~-------------------~~Ig~~a~i~g 88 (196)
T PRK13627 28 DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN-------------------GHIGHGAILHG 88 (196)
T ss_pred ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC-------------------CEECCCcEEee
Confidence 67888888888 777754 47899999999988854 455555 78888888888
Q ss_pred eEECCCCEECCCcEEeC
Q 010874 476 CIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~ 492 (498)
|+|++++.||.+++|.+
T Consensus 89 ~vIG~~v~IG~ga~V~~ 105 (196)
T PRK13627 89 CVIGRDALVGMNSVIMD 105 (196)
T ss_pred EEECCCCEECcCCccCC
Confidence 88888888888877754
No 147
>PLN02472 uncharacterized protein
Probab=98.67 E-value=6.3e-08 Score=94.71 Aligned_cols=83 Identities=16% Similarity=0.293 Sum_probs=58.4
Q ss_pred CCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEc-----------ceEEeCCccccc
Q 010874 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELK-----------DTVMLGADYYQT 450 (498)
Q Consensus 387 i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~-----------~svi~~~~~~~~ 450 (498)
+...+.+.|++.+.+ ++.||++|.|. +++|. ..+||++|.|+++|.|. +++|+++
T Consensus 62 i~~~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~----- 132 (246)
T PLN02472 62 VAVDAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRY----- 132 (246)
T ss_pred cCCCCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCC-----
Confidence 344455555555433 56777777776 56554 25889999999999884 4667666
Q ss_pred hhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 451 ESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 451 ~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||++|.|.+|+|++++.||.+++|.+
T Consensus 133 --------------v~IG~~s~L~~~~Igd~v~IG~~svI~~ 160 (246)
T PLN02472 133 --------------VTIGAYSLLRSCTIEPECIIGQHSILME 160 (246)
T ss_pred --------------CEECCCcEECCeEEcCCCEECCCCEECC
Confidence 7888888888888888888888777654
No 148
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.66 E-value=6.2e-08 Score=98.86 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=19.9
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
++.||++|.|+ +++|. +++||++|+|+++|+|.
T Consensus 139 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg 173 (324)
T TIGR01853 139 DVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIG 173 (324)
T ss_pred cceeCCCceECCCcEECCCCEECCCCEECCCcEEC
Confidence 45556666665 55554 56666666666666663
No 149
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.66 E-value=1.3e-07 Score=84.56 Aligned_cols=97 Identities=14% Similarity=0.265 Sum_probs=53.7
Q ss_pred CCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEE-eccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCc
Q 010874 387 FYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (498)
Q Consensus 387 i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~ 462 (498)
+..++.+.+.++|. .+.|. ++.||++|.|+ ++.| .+++||++|.|++++.|.+.+- ....-...++++
T Consensus 10 i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~-------~~~~~~v~Ig~~- 81 (139)
T cd03350 10 IRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLE-------PLQATPVIIEDD- 81 (139)
T ss_pred ECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCccc-------ccccCCeEECCC-
Confidence 33344444444442 23332 45667777776 5655 3567777777777777754210 000001112222
Q ss_pred ccEEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 010874 463 VPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 463 ~~v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~ 493 (498)
+.||+++.| .++.|++++.|++++.|.+.
T Consensus 82 --~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~ 111 (139)
T cd03350 82 --VFIGANCEVVEGVIVGKGAVLAAGVVLTQS 111 (139)
T ss_pred --CEECCCCEECCCCEECCCCEEcCCCEEcCC
Confidence 677777777 37778888888888877753
No 150
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.65 E-value=1.1e-07 Score=93.99 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=24.5
Q ss_pred ceEEcCCCEEC-ceEEe-------------ccEECCCCEECCCCEEcce
Q 010874 406 DAIISHGCFLR-ECTVE-------------HSIVGERSRLDYGVELKDT 440 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-------------~siIg~~~~Ig~~~~i~~s 440 (498)
+++||++|+|+ ++.|. +++||++|.|+++|.|..+
T Consensus 46 ~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~ 94 (254)
T TIGR01852 46 HTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRG 94 (254)
T ss_pred eEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCc
Confidence 57777777776 66664 4677778877777777643
No 151
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.65 E-value=3.3e-07 Score=85.44 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=64.3
Q ss_pred eEeecCCHHHHHHHHHHhhccC-CCccccCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCC
Q 010874 354 YWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGER 428 (498)
Q Consensus 354 ~w~dIgt~~dy~~An~~ll~~~-~~~~~~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~ 428 (498)
++.-+++++...+.-..+.+.. +...+..+...+...+.+++++.|. ++.|. ++.||++|+|+ ++.|. +++||++
T Consensus 59 ~iiai~~~~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~ 138 (197)
T cd03360 59 FVVAIGDNKLRRKLAEKLLAAGYRFATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDF 138 (197)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCccceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCC
Confidence 4455666633333323332221 1112233333333344444444442 24333 45566666665 55553 4666666
Q ss_pred CEECCCCEEcc-eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 429 SRLDYGVELKD-TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 429 ~~Ig~~~~i~~-svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
|.|+.++.|.+ +++.++ +.||.++.+. +++|++++.||+++++..
T Consensus 139 ~~i~~~~~i~~~~~ig~~-------------------~~ig~~~~v~~~~~ig~~~~v~~~~~v~~ 185 (197)
T cd03360 139 VHIAPGVVLSGGVTIGEG-------------------AFIGAGATIIQGVTIGAGAIIGAGAVVTK 185 (197)
T ss_pred CEECCCCEEcCCcEECCC-------------------CEECCCCEEcCCCEECCCCEECCCCEEcC
Confidence 66666666644 333333 7777777775 578888888888888765
No 152
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.64 E-value=2.3e-07 Score=84.41 Aligned_cols=67 Identities=22% Similarity=0.431 Sum_probs=55.7
Q ss_pred ceEEcCCCEEC-ceEEec----cEECCCCEECCCCEEcce-----EEeCCccccchhHHHHhhcCCcccEEeCCCcEEee
Q 010874 406 DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELKDT-----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~----siIg~~~~Ig~~~~i~~s-----vi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~ 475 (498)
+++||++|.|+ +++|.. ++||++|.|+++|+|.++ +|+++ +.|+.++.+.+
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~~ 77 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN-------------------VTVGHGAVLHG 77 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC-------------------cEECCCcEEee
Confidence 68888888888 777764 599999999999999884 77777 78888888888
Q ss_pred eEECCCCEECCCcEEe
Q 010874 476 CIIDKNVKIGKDVVIV 491 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i~ 491 (498)
++|++++.|++++.+.
T Consensus 78 ~~Ig~~~~Ig~~~~v~ 93 (153)
T cd04645 78 CTIGDNCLIGMGAIIL 93 (153)
T ss_pred eEECCCCEECCCCEEc
Confidence 8888888888777775
No 153
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.63 E-value=5.5e-08 Score=103.16 Aligned_cols=99 Identities=12% Similarity=0.192 Sum_probs=67.2
Q ss_pred CccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCC----------EECCCCEEcceEEeCCccccchhHHH----
Q 010874 391 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERS----------RLDYGVELKDTVMLGADYYQTESEIA---- 455 (498)
Q Consensus 391 ~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~----------~Ig~~~~i~~svi~~~~~~~~~~~~~---- 455 (498)
+.|++++.|+++.|.+|+||++|.|+ ++.|++|+||++| +||+++.|.+|+|.++..++..+.+.
T Consensus 283 ~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~ 362 (430)
T PRK14359 283 SHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDG 362 (430)
T ss_pred eEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccC
Confidence 34455555555666678888888888 7777777777777 66777788888888887777765332
Q ss_pred -----HhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 456 -----SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 456 -----s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
..++++ +.||.++.|. ++.||+++.||+++++..
T Consensus 363 ~~~~~~~ig~~---~~ig~~~~i~~~~~ig~~~~i~~g~~v~~ 402 (430)
T PRK14359 363 KKKHKTIIGKN---VFIGSDTQLVAPVNIEDNVLIAAGSTVTK 402 (430)
T ss_pred ccCcCCEECCC---eEEcCCCEEeCCcEECCCCEECCCCEEcc
Confidence 234444 5555555554 577777777777777653
No 154
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.62 E-value=9.5e-08 Score=101.48 Aligned_cols=66 Identities=20% Similarity=0.364 Sum_probs=59.5
Q ss_pred CCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECC-------------------CCEECCCCEEcceEEeCCcccc
Q 010874 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGE-------------------RSRLDYGVELKDTVMLGADYYQ 449 (498)
Q Consensus 390 ~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~-------------------~~~Ig~~~~i~~svi~~~~~~~ 449 (498)
.+.|++++.|.++.|.+|+||++|+|+ +|.|++|+|+. ++.||++|.|.+|+++.+
T Consensus 308 ~~~ig~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~---- 383 (429)
T PRK02862 308 ESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKN---- 383 (429)
T ss_pred eCEECCCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCC----
Confidence 467888888877899999999999999 89999999976 799999999999999998
Q ss_pred chhHHHHhhcCCcccEEeCCCcEEe
Q 010874 450 TESEIASLLAEGKVPIGVGRNTKIR 474 (498)
Q Consensus 450 ~~~~~~s~l~~~~~~v~Ig~~~~i~ 474 (498)
+.||++++|.
T Consensus 384 ---------------~~i~~~~~~~ 393 (429)
T PRK02862 384 ---------------ARIGNNVRIV 393 (429)
T ss_pred ---------------cEECCCcEEe
Confidence 8888888885
No 155
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.61 E-value=2.8e-07 Score=84.92 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=38.1
Q ss_pred CCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEcceEEe
Q 010874 388 YTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVML 443 (498)
Q Consensus 388 ~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~~svi~ 443 (498)
.+++.+.+.+.|.+ +++||++|+|+ ++.|. .++||++|.|+++|.|.+++.+
T Consensus 3 ~~~~~I~~~a~i~g----~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~ 59 (164)
T cd04646 3 APGAVVCQESEIRG----DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPK 59 (164)
T ss_pred CCCcEECCCCEEcC----ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCC
Confidence 34445555554433 68888899888 77774 3599999999999999887553
No 156
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.61 E-value=1.3e-07 Score=93.49 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=14.3
Q ss_pred eEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
+.||++|.|+ +|.|. +++||++|.|++++.|.
T Consensus 29 v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~ 62 (254)
T TIGR01852 29 VKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIG 62 (254)
T ss_pred CEECCCCEECCCCEEeeeEEECCCCEECCCcEeC
Confidence 3444444444 33332 34455555555555543
No 157
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.60 E-value=9.1e-08 Score=100.95 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=61.1
Q ss_pred CCCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEe
Q 010874 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (498)
Q Consensus 389 ~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~I 467 (498)
..+.+++++.|++++|.+|+||++|.|+ +|.|++|+|+++|+|+++|+|.+|+++++ +.|
T Consensus 314 ~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~-------------------~~i 374 (407)
T PRK00844 314 QDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN-------------------VVV 374 (407)
T ss_pred EeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC-------------------CEE
Confidence 3467788888888899999999999999 89999999999999999999999999988 788
Q ss_pred CCCcEEee
Q 010874 468 GRNTKIRN 475 (498)
Q Consensus 468 g~~~~i~~ 475 (498)
|++++|.+
T Consensus 375 ~~~~~i~~ 382 (407)
T PRK00844 375 PPGATIGV 382 (407)
T ss_pred CCCCEECC
Confidence 88887764
No 158
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.60 E-value=2.2e-07 Score=86.62 Aligned_cols=84 Identities=20% Similarity=0.344 Sum_probs=52.4
Q ss_pred CccCCCeEec-Ceeee-ceEEcCCCEEC-ceEE-eccEECCCCEECCCCEEc-ceEEeCCccccchhHHHHhhcCCcccE
Q 010874 391 PRFLPPTKID-NCRIK-DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELK-DTVMLGADYYQTESEIASLLAEGKVPI 465 (498)
Q Consensus 391 ~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~~s~l~~~~~~v 465 (498)
+.+.+++.+. ++.|. +++|+++++|| +|.| .+++|+.+++||++|.|. ++++.++ +
T Consensus 91 ~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~-------------------~ 151 (197)
T cd03360 91 AVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGG-------------------V 151 (197)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCC-------------------c
Confidence 3444444442 34454 36666666666 5555 366666666666666663 3333333 7
Q ss_pred EeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 010874 466 GVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 466 ~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 493 (498)
.||++|+|+ +|+|.++++||+++.+...
T Consensus 152 ~ig~~~~ig~~~~v~~~~~ig~~~~v~~~ 180 (197)
T cd03360 152 TIGEGAFIGAGATIIQGVTIGAGAIIGAG 180 (197)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCC
Confidence 888888885 7888888888888887654
No 159
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.60 E-value=1.7e-07 Score=92.52 Aligned_cols=33 Identities=12% Similarity=0.374 Sum_probs=16.9
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
++.||++|.|+ ++.|. ++.||++|+|++++.|.
T Consensus 29 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig 63 (255)
T PRK12461 29 NVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVG 63 (255)
T ss_pred CCEECCCcEEccCCEEeCCCEECCCCEEccCcEeC
Confidence 34555555555 44443 45555555555555553
No 160
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=98.60 E-value=1.7e-07 Score=92.54 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=6.8
Q ss_pred cEECCCCEECCCCEE
Q 010874 423 SIVGERSRLDYGVEL 437 (498)
Q Consensus 423 siIg~~~~Ig~~~~i 437 (498)
++||++|.|++++.|
T Consensus 103 ~~IG~~~~I~~~~~I 117 (254)
T cd03351 103 TRIGNNNLLMAYVHV 117 (254)
T ss_pred eEECCCCEECCCCEE
Confidence 344444444444444
No 161
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.59 E-value=5.3e-08 Score=104.22 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=69.3
Q ss_pred ccCCCeEe-cCeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeC
Q 010874 392 RFLPPTKI-DNCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (498)
Q Consensus 392 ~i~~~~~i-~~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig 468 (498)
.+++++.| .++.|.+|+||++|+|+ ++.|. +++||++++||+++.|++++++++..+...+.+ |. +.||
T Consensus 302 ~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~------g~--~~ig 373 (456)
T PRK09451 302 VIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYL------GD--AEIG 373 (456)
T ss_pred EEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccc------cc--cEEC
Confidence 33444444 24566688889999999 78886 899999999999999999999998766655443 21 5677
Q ss_pred CCcEEe-eeEECC-------CCEECCCcEEeCCC
Q 010874 469 RNTKIR-NCIIDK-------NVKIGKDVVIVNKD 494 (498)
Q Consensus 469 ~~~~i~-~~iI~~-------~~~Ig~~~~i~~~~ 494 (498)
++|.|+ ++++.. +++||+++.|....
T Consensus 374 ~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~ 407 (456)
T PRK09451 374 DNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDT 407 (456)
T ss_pred CCCEEcCCeEEecccCcccCCCEECCCcEECCCC
Confidence 777775 344432 58899999997654
No 162
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=8.4e-08 Score=98.04 Aligned_cols=88 Identities=10% Similarity=0.240 Sum_probs=43.3
Q ss_pred CccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH--HHhhcCCcccE
Q 010874 391 PRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPI 465 (498)
Q Consensus 391 ~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~--~s~l~~~~~~v 465 (498)
+.+++.+.|+ ++.+. ++.||++|+|| +|.|++|.||+++.|-+.++|++|.+..+..+++++-+ .+.|+++ +
T Consensus 269 v~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~---~ 345 (460)
T COG1207 269 VEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGAD---V 345 (460)
T ss_pred EEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCC---C
Confidence 3344444443 23332 55666666666 55666666666666666566666666555444444433 3333333 3
Q ss_pred EeCCCcEEeeeEECCC
Q 010874 466 GVGRNTKIRNCIIDKN 481 (498)
Q Consensus 466 ~Ig~~~~i~~~iI~~~ 481 (498)
+||..+.++++.||++
T Consensus 346 hIGNFVEvK~a~ig~g 361 (460)
T COG1207 346 HIGNFVEVKKATIGKG 361 (460)
T ss_pred eEeeeEEEecccccCC
Confidence 4444444444444433
No 163
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=1.4e-07 Score=96.30 Aligned_cols=68 Identities=12% Similarity=0.230 Sum_probs=61.4
Q ss_pred CCCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEe
Q 010874 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (498)
Q Consensus 389 ~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~I 467 (498)
.++.+..++.|.+ +|.+|+|+.|++|+ +|+|++|+|+++|.||+||+|+++||..+ |.|
T Consensus 295 ~nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~-------------------v~I 354 (393)
T COG0448 295 SNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKN-------------------VVI 354 (393)
T ss_pred eeeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCC-------------------cEe
Confidence 3456778888888 89999999999999 99999999999999999999999999998 899
Q ss_pred CCCcEEeee
Q 010874 468 GRNTKIRNC 476 (498)
Q Consensus 468 g~~~~i~~~ 476 (498)
++|++|++.
T Consensus 355 ~~g~~i~~~ 363 (393)
T COG0448 355 GEGVVIGGD 363 (393)
T ss_pred CCCcEEcCC
Confidence 999988754
No 164
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.54 E-value=1.1e-07 Score=101.49 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=66.7
Q ss_pred cCCCeEecCeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 393 FLPPTKIDNCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 393 i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
+++++.|..+.+.+|+|+++|.|+ ++.|. +++||++|+||+++++.+++++++......+.+. + +.||++
T Consensus 293 Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~-----~---~~Ig~~ 364 (448)
T PRK14357 293 IGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLG-----D---ATVGKN 364 (448)
T ss_pred ECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCcccccccc-----C---cEECCC
Confidence 333344434455689999999999 78885 6999999999999999999998875443332221 1 567777
Q ss_pred cEEe-eeEE-------CCCCEECCCcEEeCCC
Q 010874 471 TKIR-NCII-------DKNVKIGKDVVIVNKD 494 (498)
Q Consensus 471 ~~i~-~~iI-------~~~~~Ig~~~~i~~~~ 494 (498)
+.|+ +|++ +..++||+++.|...-
T Consensus 365 ~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~ 396 (448)
T PRK14357 365 VNIGAGTITCNYDGKKKNPTFIEDGAFIGSNS 396 (448)
T ss_pred cEECCCcccccccccccCCcEECCCCEECCCC
Confidence 7775 3433 2468999999998653
No 165
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.54 E-value=1.8e-07 Score=96.49 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=18.7
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
++.||++|.|+ +++|. ++.||++|+|+++|+|.
T Consensus 148 ~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig 182 (343)
T PRK00892 148 GVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIG 182 (343)
T ss_pred CcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEe
Confidence 35555555555 45554 34466666666666663
No 166
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.53 E-value=2.9e-07 Score=90.94 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=17.4
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.++.| .+++||+++.||+++.|..
T Consensus 183 v~IGa~s~I~~Gv~IGdgavIgag~vV~~ 211 (272)
T PRK11830 183 CFIGARSEVVEGVIVEEGSVLGMGVFLGQ 211 (272)
T ss_pred CEECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence 566666666 3566666666666666643
No 167
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.53 E-value=5.7e-07 Score=82.55 Aligned_cols=67 Identities=22% Similarity=0.381 Sum_probs=46.7
Q ss_pred ceEEcCCCEEC-ceEEec-------------cEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCc
Q 010874 406 DAIISHGCFLR-ECTVEH-------------SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~-------------siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~ 471 (498)
++.||++|.|+ +|.|.. ++||+++.|++++.|.++++.++ +.||+++
T Consensus 42 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~-------------------v~Ig~~~ 102 (161)
T cd03359 42 TVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSY-------------------VHIGKNC 102 (161)
T ss_pred ceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCC-------------------cEECCCC
Confidence 35777777777 666653 47999999999999998888877 6666666
Q ss_pred EEe-eeEECCCCEECCCcEEe
Q 010874 472 KIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 472 ~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
+|. +|+|++++.|++++.+.
T Consensus 103 ~Ig~~~~I~~~~~i~~g~~V~ 123 (161)
T cd03359 103 VIGRRCIIKDCVKILDGTVVP 123 (161)
T ss_pred EEcCCCEECCCcEECCCCEEC
Confidence 663 45555555555555443
No 168
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.51 E-value=2.1e-07 Score=99.59 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=68.1
Q ss_pred cCCCeEecCeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 393 FLPPTKIDNCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 393 i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
+..++.|.++.+.+++||++|.|+ ++.|. +++||++|+|+.+++|.+++++++..+.....+ |. +.||++
T Consensus 303 ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~------~~--~~ig~~ 374 (458)
T PRK14354 303 IGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYI------GD--AEVGEN 374 (458)
T ss_pred ECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeee------cC--cccCCc
Confidence 344444444556689999999999 88887 899999999999999999999887665544322 11 455666
Q ss_pred cEEe-eeEEC-------CCCEECCCcEEeCCCC
Q 010874 471 TKIR-NCIID-------KNVKIGKDVVIVNKDE 495 (498)
Q Consensus 471 ~~i~-~~iI~-------~~~~Ig~~~~i~~~~~ 495 (498)
+.|. ++++. -.++||+++.+.....
T Consensus 375 ~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~ 407 (458)
T PRK14354 375 VNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSN 407 (458)
T ss_pred eEEcCceeecccccccccCCEECCCcEEccCCE
Confidence 6554 33332 2588999999877653
No 169
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.49 E-value=4.6e-07 Score=96.47 Aligned_cols=55 Identities=5% Similarity=0.194 Sum_probs=48.9
Q ss_pred CccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECC----------------C---CEECCCCEEcceEEeCC
Q 010874 391 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGE----------------R---SRLDYGVELKDTVMLGA 445 (498)
Q Consensus 391 ~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~----------------~---~~Ig~~~~i~~svi~~~ 445 (498)
+.+.+++.|+++.|++|+|+++|.|+ +|.|.+|+|+. + ++||++|.|++++|.++
T Consensus 316 s~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~ 390 (436)
T PLN02241 316 SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKN 390 (436)
T ss_pred eEEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCC
Confidence 66888888888889999999999999 89999998855 3 38999999999999988
No 170
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.49 E-value=3.2e-07 Score=97.38 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=60.8
Q ss_pred CCCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEe
Q 010874 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (498)
Q Consensus 389 ~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~I 467 (498)
..+.|++++.|.++.|++|+|+++|.|+ +|+|++|+|+++|+||++|+|++|+++++ +.|
T Consensus 326 ~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~-------------------~~i 386 (425)
T PRK00725 326 INSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRG-------------------CVI 386 (425)
T ss_pred EeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCC-------------------CEE
Confidence 3567889999988999999999999999 89999999999999999999999999988 788
Q ss_pred CCCcEEe
Q 010874 468 GRNTKIR 474 (498)
Q Consensus 468 g~~~~i~ 474 (498)
+++++|+
T Consensus 387 ~~~~~i~ 393 (425)
T PRK00725 387 PEGMVIG 393 (425)
T ss_pred CCCCEEC
Confidence 8877765
No 171
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.48 E-value=6.7e-07 Score=70.77 Aligned_cols=36 Identities=11% Similarity=0.315 Sum_probs=28.0
Q ss_pred eEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEE
Q 010874 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVM 442 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi 442 (498)
+.||++|.|+ ++.|. +++||++|.|+++|.|.++..
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~ 38 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATG 38 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccC
Confidence 4577777777 67676 489999999999999987643
No 172
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=4.5e-07 Score=93.97 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=46.4
Q ss_pred CCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCC
Q 010874 389 TSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (498)
Q Consensus 389 ~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~ 445 (498)
..+.+++++.|+ ++.|. +++||+||.|+ ++.|++|+|+++|+|+++++|.+|+++.+
T Consensus 260 gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~ 319 (358)
T COG1208 260 GPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN 319 (358)
T ss_pred CCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC
Confidence 344445555553 34454 59999999999 78999999999999999999999999999
No 173
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.48 E-value=4.4e-07 Score=88.21 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=58.7
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc-ceEEeCCccccchhHHHHhhcCC-cccEEeCCCcEEe-eeEECC
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK-DTVMLGADYYQTESEIASLLAEG-KVPIGVGRNTKIR-NCIIDK 480 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~~s~l~~~-~~~v~Ig~~~~i~-~~iI~~ 480 (498)
+++||++|.|+ ++.|. +++||++|.|++++.|. +++|+++.+++..+.+...+..+ ..++.||+++.|+ +|+|.+
T Consensus 98 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~ 177 (231)
T TIGR03532 98 QVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILE 177 (231)
T ss_pred CeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcC
Confidence 67888888887 67664 68888888888888885 77777776665554442211110 1126677777775 667777
Q ss_pred CCEECCCcEEeCC
Q 010874 481 NVKIGKDVVIVNK 493 (498)
Q Consensus 481 ~~~Ig~~~~i~~~ 493 (498)
+++||+++.|...
T Consensus 178 g~~Ig~~~~Igag 190 (231)
T TIGR03532 178 GVRVGKGAVVAAG 190 (231)
T ss_pred CCEECCCCEECCC
Confidence 7777777777643
No 174
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.47 E-value=4.1e-07 Score=97.43 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=42.4
Q ss_pred CCCCCccCCCeEe-cCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccc
Q 010874 387 FYTSPRFLPPTKI-DNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQT 450 (498)
Q Consensus 387 i~~~~~i~~~~~i-~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~ 450 (498)
+...+.|++++.| .++.|.+++||++|+|+ ++.+.+|+||++|.||+++.|. ++++.++..++.
T Consensus 283 I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~ 349 (459)
T PRK14355 283 ISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGN 349 (459)
T ss_pred EeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECC
Confidence 3334444555555 34667788899999998 7888888888888888777774 344444443333
No 175
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.44 E-value=7.1e-07 Score=88.20 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=14.3
Q ss_pred eEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
++||++|.|+ ++.|. +++||++|+|+.++.|.
T Consensus 133 a~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~ 166 (272)
T PRK11830 133 AYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIG 166 (272)
T ss_pred CEECCCcEEccccEECCCCEECCCcEECCCccCC
Confidence 3444444444 33332 23455555555544443
No 176
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.44 E-value=7.2e-07 Score=84.96 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=28.7
Q ss_pred CCCCCCCccCCCeEec-Ceee-eceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEE
Q 010874 385 TPFYTSPRFLPPTKID-NCRI-KDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL 437 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~-~~~I-~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i 437 (498)
..+...+.++++++|. ++.| .++.||++|.|+ ++.|. +++||++|.|++++.|
T Consensus 14 ~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 14 AVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 3333444444444442 2444 256666666666 55554 3666666666666666
No 177
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.43 E-value=8.4e-07 Score=88.00 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=19.6
Q ss_pred ceEEcCCCEEC-ceEEe-------------ccEECCCCEECCCCEEcc
Q 010874 406 DAIISHGCFLR-ECTVE-------------HSIVGERSRLDYGVELKD 439 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-------------~siIg~~~~Ig~~~~i~~ 439 (498)
+++||++|.|+ ++.|. .++||++|.|+++|.|..
T Consensus 50 ~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~ 97 (262)
T PRK05289 50 HTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINR 97 (262)
T ss_pred ccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEec
Confidence 45556666665 45553 356666666666666654
No 178
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.3e-07 Score=87.91 Aligned_cols=101 Identities=17% Similarity=0.281 Sum_probs=73.6
Q ss_pred ccCCCCCCCCCCccCCCeEec-------CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccch
Q 010874 380 FYDPKTPFYTSPRFLPPTKID-------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE 451 (498)
Q Consensus 380 ~~~~~~~i~~~~~i~~~~~i~-------~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~ 451 (498)
+++|++.+++.+.|+|++.|+ ++++++|+|-++|.|. +++|.||+||.+|.||.+++++..-+....+...-
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~ 369 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFA 369 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcc
Confidence 567777777777777776663 4777899999999999 89999999999999999999998755443211110
Q ss_pred hHHHHhhcCCcccEEeCCCcEEeeeEECCCCEEC
Q 010874 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (498)
Q Consensus 452 ~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig 485 (498)
.-+++++. |.+++-+.+.+|++-++-.+.
T Consensus 370 --a~Tilga~---v~v~dev~v~~s~vlp~k~l~ 398 (407)
T KOG1460|consen 370 --ALTILGAD---VSVEDEVIVLNSIVLPNKELN 398 (407)
T ss_pred --eeEEeccc---ceecceeEEeeeeEecCCccc
Confidence 12234444 777887888888887776553
No 179
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.41 E-value=5.3e-07 Score=96.24 Aligned_cols=66 Identities=24% Similarity=0.408 Sum_probs=42.9
Q ss_pred ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCE
Q 010874 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~ 483 (498)
+++||++|.|+ ++.|.+|+||++|+|+ ++.+.+++++++ +.||++++|+ +|+|+++++
T Consensus 280 ~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~-------------------~~I~~~~~I~~~~~Ig~~~~ 339 (450)
T PRK14360 280 NTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDG-------------------VKIGPYAHLRPEAQIGSNCR 339 (450)
T ss_pred CcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCC-------------------cEECCCCEECCCCEEeCceE
Confidence 46677777776 6666777777777774 455666666666 6666666665 466666666
Q ss_pred ECCCcEEe
Q 010874 484 IGKDVVIV 491 (498)
Q Consensus 484 Ig~~~~i~ 491 (498)
||+++.|.
T Consensus 340 Ig~~~~i~ 347 (450)
T PRK14360 340 IGNFVEIK 347 (450)
T ss_pred ECCCEEEe
Confidence 66666554
No 180
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.38 E-value=2.6e-06 Score=76.14 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=10.5
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEE
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVI 490 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i 490 (498)
+.||+++.|. +++|..+++||+++.|
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~I 102 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVL 102 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEE
Confidence 3344444442 3444444444444443
No 181
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.38 E-value=9.7e-07 Score=95.19 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=25.7
Q ss_pred eeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCc
Q 010874 404 IKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGAD 446 (498)
Q Consensus 404 I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~ 446 (498)
+.+++|+++|.|+ ++.+. +++||++++||.++.+++++++++.
T Consensus 320 ~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~ 364 (482)
T PRK14352 320 GSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGT 364 (482)
T ss_pred eecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCc
Confidence 3456666777666 56554 5666666666666555555555443
No 182
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.35 E-value=5.1e-07 Score=89.27 Aligned_cols=79 Identities=25% Similarity=0.427 Sum_probs=43.7
Q ss_pred eEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEE-eeeEECCCCEE
Q 010874 407 AIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKI 484 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i-~~~iI~~~~~I 484 (498)
+.||+|++|+ ++ ..+||.+|+||++|.|...+..++.... .......++++ |.||.||+| +++.||+++.|
T Consensus 148 a~IG~g~~I~h~~---givIG~~a~IGdnv~I~~~VtiGg~~~~-~~~~~p~IGd~---V~IGaga~Ilggv~IG~~a~I 220 (273)
T PRK11132 148 AKIGRGIMLDHAT---GIVIGETAVIENDVSILQSVTLGGTGKT-SGDRHPKIREG---VMIGAGAKILGNIEVGRGAKI 220 (273)
T ss_pred ceECCCeEEcCCC---CeEECCCCEECCCCEEcCCcEEecCccc-CCCcCCEECCC---cEEcCCCEEcCCCEECCCCEE
Confidence 4555555555 21 2355555555555555443333321000 00112344555 788888777 47889999999
Q ss_pred CCCcEEeC
Q 010874 485 GKDVVIVN 492 (498)
Q Consensus 485 g~~~~i~~ 492 (498)
|+|+++..
T Consensus 221 GAgSvV~~ 228 (273)
T PRK11132 221 GAGSVVLQ 228 (273)
T ss_pred CCCCEECc
Confidence 99988874
No 183
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.34 E-value=2.9e-06 Score=78.39 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=62.5
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCE
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~ 483 (498)
++.||++|.|+ ++.|. +++||++|.||.+|.|.++.|.++ +.||.++.|.++.|++++.
T Consensus 64 ~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~-------------------~~Ig~~s~i~~~~i~~~~~ 124 (167)
T cd00710 64 SVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDN-------------------CVIGHNAVVDGVEIPPGRY 124 (167)
T ss_pred CEEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCC-------------------CEEcCCCEEeCCEeCCCCE
Confidence 57788899998 77786 499999999999999999888887 8999999999999999999
Q ss_pred ECCCcEEeCCCC
Q 010874 484 IGKDVVIVNKDE 495 (498)
Q Consensus 484 Ig~~~~i~~~~~ 495 (498)
|++++.+.+...
T Consensus 125 v~~~~~v~~~~~ 136 (167)
T cd00710 125 VPAGAVITSQTQ 136 (167)
T ss_pred ECCCCEEcCCCc
Confidence 999999886553
No 184
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.32 E-value=1.1e-06 Score=91.10 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=60.2
Q ss_pred CCCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEe
Q 010874 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (498)
Q Consensus 389 ~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~I 467 (498)
..+.+++++.|++++|.+|+||++|+|+ +|.|.+|+|++++.||++|+|.+|+++++ +.|
T Consensus 293 ~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~-------------------~~i 353 (361)
T TIGR02091 293 VDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKN-------------------VRI 353 (361)
T ss_pred ECCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCC-------------------CEE
Confidence 4467888888877788899999999999 89999999999999999999999999887 888
Q ss_pred CCCcEEee
Q 010874 468 GRNTKIRN 475 (498)
Q Consensus 468 g~~~~i~~ 475 (498)
++++.|+|
T Consensus 354 ~~~~~i~~ 361 (361)
T TIGR02091 354 GEGVVIGN 361 (361)
T ss_pred CCCCEeCC
Confidence 88887754
No 185
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.32 E-value=2.7e-06 Score=83.56 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=15.8
Q ss_pred eEEcCCCEEC-ceEEe-ccEECCCCEECCCCEE
Q 010874 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL 437 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i 437 (498)
++||+||.|. +++|. +++||++|+|+.++.|
T Consensus 130 a~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~I 162 (269)
T TIGR00965 130 AYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGI 162 (269)
T ss_pred cEECCCCEECCCcEECCCCEECCCCEEcCCccc
Confidence 4555555555 44442 3555555555555544
No 186
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.31 E-value=3.2e-06 Score=79.57 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=6.1
Q ss_pred cEECCCCEECCCCEE
Q 010874 423 SIVGERSRLDYGVEL 437 (498)
Q Consensus 423 siIg~~~~Ig~~~~i 437 (498)
++||++|.||.++.|
T Consensus 154 ~~ig~~~~ig~~~~v 168 (201)
T TIGR03570 154 VVIGEGVFIGAGATI 168 (201)
T ss_pred cEECCCCEECCCCEE
Confidence 344444444444333
No 187
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.31 E-value=2.9e-06 Score=80.67 Aligned_cols=112 Identities=19% Similarity=0.282 Sum_probs=52.1
Q ss_pred CCCCCCCCCCccCCCeEecC-eeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcc-------------eEEeC
Q 010874 382 DPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD-------------TVMLG 444 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~~-~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~-------------svi~~ 444 (498)
+|.+-|.+++.++++++|+. |.|+ ++.||+|++|+ .++|+ ++.||.+++|-+++.|.+ -+|.+
T Consensus 7 HPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~ 86 (260)
T COG1043 7 HPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGD 86 (260)
T ss_pred CcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECC
Confidence 33333344444444444433 3333 46666666666 45554 567777666666665542 12222
Q ss_pred CccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 010874 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 445 ~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 493 (498)
+..+-+++.+..--.+|.--+.||++..+- ++-|..+|+||.+|++.|.
T Consensus 87 ~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNn 136 (260)
T COG1043 87 NNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANN 136 (260)
T ss_pred CCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecC
Confidence 222222222211122221115677665552 4555555555555555553
No 188
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.30 E-value=3e-06 Score=73.17 Aligned_cols=15 Identities=7% Similarity=0.167 Sum_probs=7.6
Q ss_pred cEECCCCEECCCCEE
Q 010874 423 SIVGERSRLDYGVEL 437 (498)
Q Consensus 423 siIg~~~~Ig~~~~i 437 (498)
++||++|.||+++.|
T Consensus 68 ~~Ig~~~~Ig~~~~v 82 (119)
T cd03358 68 TTVKRGASIGANATI 82 (119)
T ss_pred cEECCCcEECcCCEE
Confidence 445555555555444
No 189
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.28 E-value=7.6e-06 Score=75.05 Aligned_cols=89 Identities=19% Similarity=0.377 Sum_probs=57.0
Q ss_pred CccCCCeEecC--eeeeceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcc
Q 010874 391 PRFLPPTKIDN--CRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (498)
Q Consensus 391 ~~i~~~~~i~~--~~I~~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~ 463 (498)
+.|.+.++|.+ ..|++..||+++.|. +++++ .-.||++|.|.+||+|.-.-= ....+++.
T Consensus 12 P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~-----------~p~~IG~~-- 78 (176)
T COG0663 12 PKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPG-----------YPVTIGDD-- 78 (176)
T ss_pred CCCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCC-----------CCeEECCC--
Confidence 34444455522 233467777777777 56553 456777777777777753100 11122223
Q ss_pred cEEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 010874 464 PIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 464 ~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~ 493 (498)
|.||+++.|..|.|++++-||-|++|.|.
T Consensus 79 -vtIGH~aivHGc~Ig~~~lIGmgA~vldg 107 (176)
T COG0663 79 -VTIGHGAVVHGCTIGDNVLIGMGATVLDG 107 (176)
T ss_pred -cEEcCccEEEEeEECCCcEEecCceEeCC
Confidence 88999999999999999999999888873
No 190
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.28 E-value=4.9e-06 Score=82.68 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=56.6
Q ss_pred CCCCCCccCCCeEec-Ceeee-ceEEcCCCE-ECceEE-----eccEECCCCEECCCCEEcceEEeCCccccchhHHHHh
Q 010874 386 PFYTSPRFLPPTKID-NCRIK-DAIISHGCF-LRECTV-----EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASL 457 (498)
Q Consensus 386 ~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~-I~~~~v-----~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~ 457 (498)
.|...+++.++++|. ++.|. .++|+.++. +|.+.| ..++||.+|.||.+|.| .+++-++. .. ...
T Consensus 180 rI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI-g~tLsGg~-----~~-~V~ 252 (341)
T TIGR03536 180 RIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST-MGTLSGGG-----NI-VIS 252 (341)
T ss_pred EEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE-eEEEeCCC-----ce-eEE
Confidence 344444555555553 34443 366666666 553334 36788999999999988 44443331 00 022
Q ss_pred hcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 010874 458 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (498)
Q Consensus 458 l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~ 494 (498)
++++ +.||.|+.| +..||++|.||+|+.|...-
T Consensus 253 IGe~---~lIGagA~I-GI~IGd~~iIGAGavVtagT 285 (341)
T TIGR03536 253 VGEG---CLLGANAGI-GIPLGDRCTVEAGLYITAGT 285 (341)
T ss_pred ECCC---cEECCCCEE-eeEECCCCEECCCCEEeCCc
Confidence 3333 455555555 67788888888888776543
No 191
>PRK10502 putative acyl transferase; Provisional
Probab=98.27 E-value=5.9e-06 Score=77.46 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=32.0
Q ss_pred CCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEc
Q 010874 386 PFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELK 438 (498)
Q Consensus 386 ~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~ 438 (498)
.+..++.|.+++.|..- .+..||++|.|+ ++.|. ..+||++|.|+.+|.|.
T Consensus 53 ~iG~~~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~ 107 (182)
T PRK10502 53 KIGKGVVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLC 107 (182)
T ss_pred ccCCCcEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCCcEECCCeEEE
Confidence 34445555555555210 146677777777 56654 57888888888888774
No 192
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.26 E-value=1.4e-06 Score=90.54 Aligned_cols=73 Identities=15% Similarity=0.318 Sum_probs=61.5
Q ss_pred CCCCCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCC
Q 010874 383 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 461 (498)
Q Consensus 383 ~~~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~ 461 (498)
+...+ ..+.|++++.|+ +.|.+|+|+++|.|+ +|.|++|+|+++|.|+++++|.+|+++.+
T Consensus 283 ~~~~i-~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~---------------- 344 (369)
T TIGR02092 283 ENSKV-ENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKD---------------- 344 (369)
T ss_pred CCCEE-EEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCC----------------
Confidence 33433 455677777775 467899999999999 99999999999999999999999999988
Q ss_pred cccEEeCCCcEEeee
Q 010874 462 KVPIGVGRNTKIRNC 476 (498)
Q Consensus 462 ~~~v~Ig~~~~i~~~ 476 (498)
+.||+++++++.
T Consensus 345 ---~~v~~~~~~~~~ 356 (369)
T TIGR02092 345 ---VVIEPNVKIAGT 356 (369)
T ss_pred ---CEECCCCEeCCC
Confidence 899998888754
No 193
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.26 E-value=3.2e-06 Score=83.42 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=9.9
Q ss_pred cEECCCCEECCCCEEc
Q 010874 423 SIVGERSRLDYGVELK 438 (498)
Q Consensus 423 siIg~~~~Ig~~~~i~ 438 (498)
.+||++|+|+++|.|.
T Consensus 78 v~IG~~~~I~e~vtI~ 93 (255)
T PRK12461 78 LEIGDRNVIREGVTIH 93 (255)
T ss_pred eEECCceEECCccEEe
Confidence 4566666666666664
No 194
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.24 E-value=6.9e-06 Score=75.40 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=48.9
Q ss_pred ceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECC
Q 010874 406 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~ 480 (498)
+..||++|.|+ +|.|. ++.||++|.|+++|.|.++....+.. .......++++ +.|++++.+.+++|++
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~---~~~~~v~Ig~~---~~Ig~~~~i~~~~Ig~ 94 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKG---VAFFPLHIGDY---VFIGENCVVNAAQIGS 94 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCC---ccccCeEECCc---cEECCCCEEEeeEEcC
Confidence 34555555555 45444 36899999999999998764222110 00001123333 6778888777777777
Q ss_pred CCEECCCcEEeC
Q 010874 481 NVKIGKDVVIVN 492 (498)
Q Consensus 481 ~~~Ig~~~~i~~ 492 (498)
++.||++++|..
T Consensus 95 ~v~Ig~~~~Ig~ 106 (161)
T cd03359 95 YVHIGKNCVIGR 106 (161)
T ss_pred CcEECCCCEEcC
Confidence 777777766644
No 195
>PLN02694 serine O-acetyltransferase
Probab=98.24 E-value=2.9e-06 Score=84.14 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=22.2
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.|++| .++.||++++||+|++|..
T Consensus 219 V~IGagA~Ilggi~IGd~a~IGAgSVV~k 247 (294)
T PLN02694 219 VLIGAGATILGNVKIGEGAKIGAGSVVLI 247 (294)
T ss_pred eEECCeeEECCCCEECCCCEECCCCEECC
Confidence 778877777 6788888888888888764
No 196
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.24 E-value=0.00011 Score=73.99 Aligned_cols=214 Identities=13% Similarity=0.177 Sum_probs=127.9
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHh----cCC-CeEEEEeccC-chhHHHHHHhhc-cC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN----SGI-NKIFVLTQFN-SASLNRHIARTY-FG 165 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~----sGi-~~I~Vv~~~~-~~~l~~hl~~~~-~~ 165 (498)
+++.+|+||||.||||. ...||.|+||.....++++.++++.. .|. =..+|.+++. .+...+++.+ | +.
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~-~~~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK-YAGV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH-cCCC
Confidence 46789999999999996 57899999996443899999999864 233 2567777755 4567788864 3 21
Q ss_pred CC-C-cCCCCeEEEecc------cCCCCCCCCcc-ccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceeeecCHHHHH
Q 010874 166 NG-T-NFGDGFVEVLAA------TQTPGESGKNW-FQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRMDYMDFI 234 (498)
Q Consensus 166 ~~-~-~~~~~~V~v~~~------~q~~~~~~~~~-~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll 234 (498)
.. . .|..+.+-.+.. .+..+.....| +.|.|+....... .+++......+++.+.+.|.+...-=-.++
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~l 157 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRIL 157 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHH
Confidence 10 0 011111110000 00000011112 4677776655432 344444557799999999997643224578
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCceEEE-ECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEE
Q 010874 235 QSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVF 313 (498)
Q Consensus 235 ~~h~~~~ad~tv~~~~~~~~~~~~~g~v~-~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif 313 (498)
-.|.++++++++=+.+-..+. ..-|.+. .|..-+|+++.|-|...... .+ + .....+.+++.+.|
T Consensus 158 g~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~~-~~-~-----------~~~~~~~nt~n~~~ 223 (300)
T cd00897 158 NHMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDE-FK-S-----------IKKFKIFNTNNLWV 223 (300)
T ss_pred HHHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHHh-hc-C-----------cccceEEEEeEEEE
Confidence 888999999887665544322 2345443 44333577777766543210 00 0 01235789999999
Q ss_pred cHHHHHHHHHh
Q 010874 314 KKDVLFKLLRW 324 (498)
Q Consensus 314 ~~~vL~~ll~~ 324 (498)
+-+.|.++++.
T Consensus 224 ~l~~L~~~~~~ 234 (300)
T cd00897 224 NLKAVKRVVEE 234 (300)
T ss_pred EHHHHHHHHHh
Confidence 99999887653
No 197
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.23 E-value=2.8e-06 Score=82.30 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=54.6
Q ss_pred CCCCCCCccCCCeEecC-eeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcC
Q 010874 385 TPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAE 460 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~~-~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~ 460 (498)
+.+..++.+.+++.+.. +.|. ++.++.+|.|+ .+++. ..+||.||+||.|+.|.+. +-+.
T Consensus 115 a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GV-Lep~--------------- 178 (271)
T COG2171 115 AIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGV-LEPL--------------- 178 (271)
T ss_pred cEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEE-ecCC---------------
Confidence 33444444444444422 3333 57777777776 55553 4688888888888887773 3221
Q ss_pred CcccEEeCCCcEEe-------eeEECCCCEECCCcEEeC
Q 010874 461 GKVPIGVGRNTKIR-------NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 461 ~~~~v~Ig~~~~i~-------~~iI~~~~~Ig~~~~i~~ 492 (498)
+..|+.||+||.|+ .+++|++|.|++|+.|..
T Consensus 179 ~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~ 217 (271)
T COG2171 179 QANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQ 217 (271)
T ss_pred CCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeC
Confidence 24456777776665 456666666666666654
No 198
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.21 E-value=3.3e-06 Score=87.31 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=59.4
Q ss_pred cCCCCCCCCCCccCCCeEec-Ceeeec------eEEcCCCEECceEEeccEECCCCEECCC-CEEcceEEeCCccccchh
Q 010874 381 YDPKTPFYTSPRFLPPTKID-NCRIKD------AIISHGCFLRECTVEHSIVGERSRLDYG-VELKDTVMLGADYYQTES 452 (498)
Q Consensus 381 ~~~~~~i~~~~~i~~~~~i~-~~~I~~------s~Ig~~~~I~~~~v~~siIg~~~~Ig~~-~~i~~svi~~~~~~~~~~ 452 (498)
+.+.+.+ ..+.+.+|++|+ +|.|.+ |+||++|+|+++.|.+|+|+++++|+.+ +++.++++.++
T Consensus 257 i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~------- 328 (353)
T TIGR01208 257 VGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDSVIGKK------- 328 (353)
T ss_pred ECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcceeecCEEcCC-------
Confidence 4445555 455555666663 466554 5555555555555678999999999888 48899988877
Q ss_pred HHHHhhcCCcccEEeCCCcEEe---eeEECCCCEEC
Q 010874 453 EIASLLAEGKVPIGVGRNTKIR---NCIIDKNVKIG 485 (498)
Q Consensus 453 ~~~s~l~~~~~~v~Ig~~~~i~---~~iI~~~~~Ig 485 (498)
+.|+++++|. +.++|++++|+
T Consensus 329 ------------~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 329 ------------VRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred ------------CEECCCcccccccceEEcCCceec
Confidence 8899998886 36778777775
No 199
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.20 E-value=1.1e-05 Score=71.99 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=51.6
Q ss_pred CCCCccCCCeEec-Ceeee-ceEEcCCCEECceEE-eccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCccc
Q 010874 388 YTSPRFLPPTKID-NCRIK-DAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVP 464 (498)
Q Consensus 388 ~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~~~~v-~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~ 464 (498)
..++.+++++.|. ++.|. ++.||++|.|.. +| .+++||.+|.||++|.|. +.+-+. ......++++
T Consensus 11 ~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~-~~l~G~------~~~pV~IG~~--- 79 (147)
T cd04649 11 RLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM-GTLSGG------GNNVISIGKR--- 79 (147)
T ss_pred CCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE-EECCCC------cccCEEECCC---
Confidence 3344444444442 22222 445555555432 22 247888888888888877 332221 0001123333
Q ss_pred EEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 010874 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 465 v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~ 493 (498)
+.||.++.| +..||+++.||+|+++...
T Consensus 80 ~~IG~ga~I-gv~IG~~~vIGaGsvV~k~ 107 (147)
T cd04649 80 CLLGANSGI-GISLGDNCIVEAGLYVTAG 107 (147)
T ss_pred CEECCCCEE-eEEECCCCEECCCCEEeCC
Confidence 566666766 6778888888888877654
No 200
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.19 E-value=9e-06 Score=77.36 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=36.5
Q ss_pred CCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEcc
Q 010874 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKD 439 (498)
Q Consensus 387 i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~~ 439 (498)
+..++.|.+|.++... .++.||++|+|+ +|+|. +..||++|.|+++|.|..
T Consensus 58 ig~~~~I~~~~~~~~g--~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~ 112 (203)
T PRK09527 58 VGENAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSV 112 (203)
T ss_pred cCCCcEEcCCEEEeeC--CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEe
Confidence 4456677777766310 267788888888 77763 478999999999998863
No 201
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.18 E-value=8.9e-06 Score=77.45 Aligned_cols=107 Identities=17% Similarity=0.302 Sum_probs=56.6
Q ss_pred CCCCCCCCCCccCCCeEec-Ceeeec-eEEcCCCEEC-ceEE-eccEECCCCEECCCCEEcceEEeCCccccchh-----
Q 010874 382 DPKTPFYTSPRFLPPTKID-NCRIKD-AIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTES----- 452 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~-~~~I~~-s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~----- 452 (498)
++...+++.+.+.++++|+ ++.|.+ ++|+++++|+ +|.| .+++|+.+++||++|.|.....++.+.+....
T Consensus 5 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~ 84 (205)
T cd03352 5 GENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGW 84 (205)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcE
Confidence 3445555666666666663 355543 6666666666 5666 36677777777777777663333321111000
Q ss_pred -H---H-HHhhcCCcccEEeCCCcEEee-----eEECCCCEECCCcEEe
Q 010874 453 -E---I-ASLLAEGKVPIGVGRNTKIRN-----CIIDKNVKIGKDVVIV 491 (498)
Q Consensus 453 -~---~-~s~l~~~~~~v~Ig~~~~i~~-----~iI~~~~~Ig~~~~i~ 491 (498)
+ . ..+++++ +.|++++.+.. +.|++++.|+.++.|.
T Consensus 85 ~~~~~~~~v~Ig~~---~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~ 130 (205)
T cd03352 85 VKIPQLGGVIIGDD---VEIGANTTIDRGALGDTVIGDGTKIDNLVQIA 130 (205)
T ss_pred EEcCCcceEEECCC---EEECCCCEEeccccCCeEECCCCEECCceEEe
Confidence 0 0 2233444 56666666652 4556666555555553
No 202
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.16 E-value=0.00022 Score=68.21 Aligned_cols=181 Identities=21% Similarity=0.239 Sum_probs=104.5
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
.|||.|-|.++||.- |.|.+++|+ |||+|+++.+.+++ +++|+|.|.. +.+.+.+. . ++ ..
T Consensus 1 iaiIpAR~gS~rlp~------Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~-~-------~g-~~ 62 (217)
T PF02348_consen 1 IAIIPARGGSKRLPG------KNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAE-E-------YG-AK 62 (217)
T ss_dssp EEEEEE-SSSSSSTT------GGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHH-H-------TT-SE
T ss_pred CEEEecCCCCCCCCc------chhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHH-H-------cC-Ce
Confidence 389999999999985 999999999 99999999999974 7999888854 45555553 3 23 22
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCC-eEEEEEec
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDAD-ITISCAAV 251 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad-~tv~~~~~ 251 (498)
|.+..... ..++......+..+.. ...+.++.+.||. +.+ ..+..+++.+.+..++ +.-...+.
T Consensus 63 v~~~~~~~---------~~~~~r~~~~~~~~~~----~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~ 129 (217)
T PF02348_consen 63 VIFRRGSL---------ADDTDRFIEAIKHFLA----DDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPV 129 (217)
T ss_dssp EEE--TTS---------SSHHHHHHHHHHHHTC----STTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEE
T ss_pred eEEcChhh---------cCCcccHHHHHHHhhh----hHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccc
Confidence 43332221 1344333333322221 1224789999998 333 4578899999888776 32223332
Q ss_pred CC-CC--CCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHH-HHH
Q 010874 252 GE-SR--ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLF 319 (498)
Q Consensus 252 ~~-~~--~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~-vL~ 319 (498)
.. .. ..+.-....+.++....+.+.+......... .+. ..++...++|.++.. .+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~ 189 (217)
T PF02348_consen 130 GSSVEIFNFNPLKVLFDDDGLELYFSEHVIPYIRRNPE----EFK--------YFYIRQVGIYAFRKEMFLE 189 (217)
T ss_dssp CSHHHHTSTTSTEEEECTTSBEEEEESSESSECHHHHC----SSS--------STEEEEEEEEEEEHHHHHH
T ss_pred cchhhcccccceEEEeccccchhhcccCCCcccccccc----ccc--------ccccccccccccccccccc
Confidence 21 00 1112223445556666666654432110000 000 125778999999997 443
No 203
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.15 E-value=7.8e-06 Score=69.06 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=48.7
Q ss_pred cCCCeEe-cCeeee-ceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 393 FLPPTKI-DNCRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 393 i~~~~~i-~~~~I~-~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
+++.++| .++.|. +++||++|.|+. .|++|+|++++.|+.+++|.++++.++ +.||++
T Consensus 32 IG~~~~Ig~~~~I~~~v~IG~~~~Ig~-~i~~svi~~~~~i~~~~~lg~siIg~~-------------------v~ig~~ 91 (101)
T cd05635 32 IGPGSRVKMGARIYGNTTIGPTCKIGG-EVEDSIIEGYSNKQHDGFLGHSYLGSW-------------------CNLGAG 91 (101)
T ss_pred ECCCCEECCCCEEeCcCEECCCCEECC-EECccEEcCCCEecCcCEEeeeEECCC-------------------CEECCC
Confidence 3334444 235554 588888888874 678999999999999999999999888 899988
Q ss_pred cEEee
Q 010874 471 TKIRN 475 (498)
Q Consensus 471 ~~i~~ 475 (498)
+.+.|
T Consensus 92 ~~~~~ 96 (101)
T cd05635 92 TNNSD 96 (101)
T ss_pred ceecc
Confidence 87654
No 204
>PLN02357 serine acetyltransferase
Probab=98.14 E-value=6.5e-06 Score=83.90 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=12.3
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
|.||.|+.| +++.||+++.||+|++|.
T Consensus 285 V~IGagA~IlggV~IGdga~IGAgSVV~ 312 (360)
T PLN02357 285 VLIGAGTCILGNITIGEGAKIGAGSVVL 312 (360)
T ss_pred eEECCceEEECCeEECCCCEECCCCEEC
Confidence 444444433 344444444444444443
No 205
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.13 E-value=8.3e-06 Score=74.99 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=22.0
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.++.|. +++||+++.||++++|..
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 7788777774 578888888888888874
No 206
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.12 E-value=1.4e-05 Score=84.22 Aligned_cols=96 Identities=19% Similarity=0.312 Sum_probs=63.6
Q ss_pred CeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEECCCC---------CEEEEEeCCCccccccc
Q 010874 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG---------RIAQFAEKPSGANLKAM 285 (498)
Q Consensus 215 e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~~g---------rV~~~~EKp~~~~~~~~ 285 (498)
.-++|..||.++...-...+.. .+++++++..|.+-+-+++.|+...|+++ .+..|..||.....
T Consensus 54 pGv~V~s~D~vl~~~~~~~~~~---~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem--- 127 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLIDW---DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEM--- 127 (414)
T ss_pred cceEEEecccccccCccccCCC---CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHH---
Confidence 4589999995443221222221 23678888888876667899999999988 78899999987643
Q ss_pred cccccccCCCccccccCCcceeeeEEEEcHHHHHHHHH
Q 010874 286 QVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR 323 (498)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~ 323 (498)
+-...++ .......++|++.|+.+....++.
T Consensus 128 ~~~~av~-------~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 128 RASGAVL-------PDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred HhCCccc-------CCCcccccccceeccHHHHHHHHH
Confidence 2111111 112346689999999887766654
No 207
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.12 E-value=1.3e-05 Score=73.66 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=30.1
Q ss_pred CCCCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEEe---------ccEECCCCEECCCCEEcc
Q 010874 385 TPFYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTVE---------HSIVGERSRLDYGVELKD 439 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v~---------~siIg~~~~Ig~~~~i~~ 439 (498)
..+..++.++++++|. ++.|. +++||++|.|+ ++++. +++||++|.||++|.|..
T Consensus 62 ~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~ 130 (162)
T TIGR01172 62 VDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLG 130 (162)
T ss_pred eEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEEC
Confidence 3444555566666553 13443 36666666665 45543 246666666666665544
No 208
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.10 E-value=0.00012 Score=77.17 Aligned_cols=215 Identities=20% Similarity=0.312 Sum_probs=125.2
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHh----cCC-CeEEEEeccC-chhHHHHHHhhccC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN----SGI-NKIFVLTQFN-SASLNRHIARTYFG 165 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~----sGi-~~I~Vv~~~~-~~~l~~hl~~~~~~ 165 (498)
..++.+|+||||.||||. ..-||.|+||.....+++..++++.. .|. -..+|.++++ .+...+++.+ |++
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yfg 129 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YFG 129 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GCG
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hcC
Confidence 567889999999999998 57899999996554789988888764 243 2467777755 5678888865 765
Q ss_pred CCCc---CCCCeEEEecccC-CCCCC-------CCcc-ccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeeecCHH
Q 010874 166 NGTN---FGDGFVEVLAATQ-TPGES-------GKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYM 231 (498)
Q Consensus 166 ~~~~---~~~~~V~v~~~~q-~~~~~-------~~~~-~~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~GD~l~~~dl~ 231 (498)
...+ |.++.+-.+..+. .+-+. ...| +.|.||...... ..+++......+++.|.+.|.+...-=-
T Consensus 130 ~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp 209 (420)
T PF01704_consen 130 LDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDP 209 (420)
T ss_dssp SSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-H
T ss_pred CCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCH
Confidence 4322 1111222221111 00000 0123 458887665553 2455544567799999999997654334
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCceEEE-ECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeE
Q 010874 232 DFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (498)
Q Consensus 232 ~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~-~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI 310 (498)
.++..+.++++++.+-+.+...+. ..-|++. .+..-+++.+.+-|..... ..+- .....+.++|-
T Consensus 210 ~~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~~~G~~~vvEysqip~~~~~-~~~~------------~~~~~~FntnN 275 (420)
T PF01704_consen 210 VFLGYMIEKNADFGMEVVPKTSPD-EKGGVLCRYDGKLQVVEYSQIPKEHMA-EFKD------------IKGFLLFNTNN 275 (420)
T ss_dssp HHHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEEETTEEEEEEGGGS-HHGHH-HHTS------------TTTSBEEEEEE
T ss_pred HHHHHHHhccchhheeeeecCCCC-CceeEEEEeCCccEEEEeccCCHHHHH-hhhc------------cccceEEEece
Confidence 578888889999988777654322 2345544 3322234444444432110 0000 00124668888
Q ss_pred EEEcHHHHHHHHHh
Q 010874 311 YVFKKDVLFKLLRW 324 (498)
Q Consensus 311 Yif~~~vL~~ll~~ 324 (498)
-.|+-+.|+++++.
T Consensus 276 i~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 276 IWFSLDFLKRLLER 289 (420)
T ss_dssp EEEEHHHHHHHHHT
T ss_pred eeEEHHHHHHHHHh
Confidence 89999999988764
No 209
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.10 E-value=2.4e-05 Score=72.39 Aligned_cols=94 Identities=17% Similarity=0.247 Sum_probs=49.9
Q ss_pred CCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEcceEEeCCccccchhHH--------HH
Q 010874 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEI--------AS 456 (498)
Q Consensus 389 ~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~--------~s 456 (498)
..+.+.++..+.-. .+..||++|+|+ ++.|. +.+||++|.|+++|.|..+- +.....+. ..
T Consensus 47 ~~~~i~~~~~~~~~--~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~-----h~~~~~~~~~~~~~~~~v 119 (169)
T cd03357 47 ENVYIEPPFHCDYG--YNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAG-----HPLDPEERNRGLEYAKPI 119 (169)
T ss_pred CCCEEcCCEEEEeC--CcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCC-----CCCChhHccccceecCCc
Confidence 34455555544210 145667777776 55553 45788888888888885320 00000000 01
Q ss_pred hhcCCcccEEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 457 LLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 457 ~l~~~~~~v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
.++++ +.||.++.| .++.||++|.||+++++..
T Consensus 120 ~IG~~---~~Ig~~a~I~~gv~Ig~~~~VgagavV~~ 153 (169)
T cd03357 120 TIGDN---VWIGGGVIILPGVTIGDNSVIGAGSVVTK 153 (169)
T ss_pred EeCCC---EEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 12222 455555554 3667777777777777665
No 210
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.07 E-value=1.9e-05 Score=74.02 Aligned_cols=46 Identities=13% Similarity=0.330 Sum_probs=30.0
Q ss_pred CCccCCCeEecCeeee-ceEEcCCCEEC-ceEEecc---EECCCCEECCCCEEc
Q 010874 390 SPRFLPPTKIDNCRIK-DAIISHGCFLR-ECTVEHS---IVGERSRLDYGVELK 438 (498)
Q Consensus 390 ~~~i~~~~~i~~~~I~-~s~Ig~~~~I~-~~~v~~s---iIg~~~~Ig~~~~i~ 438 (498)
++.+.||.+. .+. +..||++++|+ +|+|.+. .||++|.|+++|.|.
T Consensus 59 ~~~i~~~~~~---~~g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~ 109 (183)
T PRK10092 59 EAYIEPTFRC---DYGYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIY 109 (183)
T ss_pred CEEEeCCEEE---eecCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEE
Confidence 4556666643 221 56777777777 6655432 788888888888875
No 211
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.07 E-value=2.1e-05 Score=66.19 Aligned_cols=63 Identities=19% Similarity=0.291 Sum_probs=42.5
Q ss_pred eEEcCCCEECceEEeccEECCCCEECCCCE---EcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEee-eEECCCC
Q 010874 407 AIISHGCFLRECTVEHSIVGERSRLDYGVE---LKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNV 482 (498)
Q Consensus 407 s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~---i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~-~iI~~~~ 482 (498)
++|++++.|++ ++.|+.+++|+.++. +.+++|+++ +.|+.++.+.. +.|++++
T Consensus 23 ~~ig~~~~Ig~----~~~i~~~~~i~~~~~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~~~~Ig~~~ 79 (101)
T cd03354 23 IVIGETAVIGD----NCTIYQGVTLGGKGKGGGKRHPTIGDN-------------------VVIGAGAKILGNITIGDNV 79 (101)
T ss_pred EEECCCCEECC----CCEEcCCCEECCCccCCcCCCCEECCC-------------------cEEcCCCEEECcCEECCCC
Confidence 45566666652 134555666665554 566666665 78888887764 8899999
Q ss_pred EECCCcEEeC
Q 010874 483 KIGKDVVIVN 492 (498)
Q Consensus 483 ~Ig~~~~i~~ 492 (498)
.|++++.|.+
T Consensus 80 ~i~~~~~i~~ 89 (101)
T cd03354 80 KIGANAVVTK 89 (101)
T ss_pred EECCCCEECc
Confidence 9999988875
No 212
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.07 E-value=2e-05 Score=66.82 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=15.8
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
+.||+++.+ .++.|++++.|++++.+.
T Consensus 65 ~~ig~~~~i~~~~~ig~~~~i~~~~~v~ 92 (109)
T cd04647 65 VWIGANVVILPGVTIGDGAVVGAGSVVT 92 (109)
T ss_pred CEECCCCEEcCCCEECCCCEECCCCEEe
Confidence 445555554 356666666666666665
No 213
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=98.06 E-value=0.00019 Score=76.51 Aligned_cols=216 Identities=16% Similarity=0.240 Sum_probs=128.0
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecC---CcchhHHHHHHHHHhc--------------CC-CeEEEEeccC-c
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------------GI-NKIFVLTQFN-S 152 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~---G~~pLId~~L~~l~~s--------------Gi-~~I~Vv~~~~-~ 152 (498)
..++.+|+||||.||||. ...||.|++|+ |+ .+++...+++... ++ =..+|.|+.. .
T Consensus 114 ~gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~ 189 (493)
T PLN02435 114 EGKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTD 189 (493)
T ss_pred cCCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchh
Confidence 367889999999999998 57899999886 77 8999999886431 11 1347778744 5
Q ss_pred hhHHHHHHh-hccCCCCc----CCCCeEEEecccC-----CCCCCCCccccChHHHHHHHHH--HHHhhhcCCCCeEEEE
Q 010874 153 ASLNRHIAR-TYFGNGTN----FGDGFVEVLAATQ-----TPGESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAIL 220 (498)
Q Consensus 153 ~~l~~hl~~-~~~~~~~~----~~~~~V~v~~~~q-----~~~~~~~~~~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl 220 (498)
+...+++.+ .||+.... |..+.+-++..+. .+.. -.--+.|.|+..+.... .+++.+....+++.+.
T Consensus 190 ~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~-i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~ 268 (493)
T PLN02435 190 EATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFK-VAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCY 268 (493)
T ss_pred HHHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcc-cccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEE
Confidence 677788864 34543211 0111111111000 0000 00124688887766543 4565556678999999
Q ss_pred cCcee-eecCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEE-CCCCC--EEEEEeCCCccccccccccccccCCCc
Q 010874 221 CGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-DNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSP 296 (498)
Q Consensus 221 ~GD~l-~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~-d~~gr--V~~~~EKp~~~~~~~~~~~~~~~~~~~ 296 (498)
+-|.+ ...---.++-.+.+.++++.+-+.+...+. ..-|++.. +.+|+ |+.+.|-+....... .-+++.|
T Consensus 269 ~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~-EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~-~~~~g~L---- 342 (493)
T PLN02435 269 GVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQ-EKVGVFVRRGKGGPLTVVEYSELDQAMASAI-NQQTGRL---- 342 (493)
T ss_pred ecccccccccCHHHHHHHHhcCCceEEEeeecCCCC-CceeEEEEecCCCCEEEEEeccCCHHHHhcc-Ccccccc----
Confidence 99995 433334577788888999887665443211 23466543 34554 666665443211100 0011111
Q ss_pred cccccCCcceeeeEEEEcHHHHHHHHH
Q 010874 297 QEARKCPYVASMGVYVFKKDVLFKLLR 323 (498)
Q Consensus 297 ~~~~~~~~l~~~GIYif~~~vL~~ll~ 323 (498)
.....+++.++|+-++|.++.+
T Consensus 343 -----~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 343 -----RYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred -----ccchhhHHHhhccHHHHHHHHH
Confidence 2357788999999999988753
No 214
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.05 E-value=2.2e-05 Score=74.25 Aligned_cols=35 Identities=9% Similarity=0.144 Sum_probs=28.0
Q ss_pred ceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEcce
Q 010874 406 DAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDT 440 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~~s 440 (498)
...||++|.|+ ++.|. ...||++|.|++++.|.+.
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDH 103 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECC
Confidence 47788888887 67664 6799999999999988763
No 215
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=98.03 E-value=5.6e-05 Score=86.24 Aligned_cols=198 Identities=18% Similarity=0.192 Sum_probs=128.2
Q ss_pred eEEEEcCceeeecC--HHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEECCC--CCEEEEEeCCCccccccccccccc
Q 010874 216 NVAILCGDHLYRMD--YMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM--GRIAQFAEKPSGANLKAMQVDTSL 291 (498)
Q Consensus 216 ~~Lvl~GD~l~~~d--l~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~~--grV~~~~EKp~~~~~~~~~~~~~~ 291 (498)
.+||..||.+..++ +.+ -.++|++......+.+..+++|+...|.+ +++..+..||..++..++.
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~----- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS----- 222 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-----
Confidence 79999999876554 222 13466666666666556788999999887 6888888999876542221
Q ss_pred cCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC------CCchhhhhHHHH----------hhcCceEEEEEc-ce
Q 010874 292 LGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT------SNDFGSEIIPAA----------IMEHDVQAYIFR-DY 354 (498)
Q Consensus 292 ~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~------~~df~~dii~~~----------i~~~~I~~~~~~-~~ 354 (498)
.....+.++|+|+|+.+....+++..+.+ ..|+.+|++..+ ++..++....+. +-
T Consensus 223 --------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 223 --------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred --------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 11346889999999999888777654321 235555655443 233455555554 46
Q ss_pred EeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEecCeeeeceEEcCCCEEC-c-eEEeccEECCCCEEC
Q 010874 355 WEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-E-CTVEHSIVGERSRLD 432 (498)
Q Consensus 355 w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~-~~v~~siIg~~~~Ig 432 (498)
++.+||-..|+.....+.+..- +. ..+.+...-..|+ +-|.||+|+.+|.++ + +.|++|.|+.+++||
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~~-----~~-~~i~~~~~~~~~~----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig 364 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLVT-----DQ-RRIMHRKVKPHPA----MFVQNAVLSGKLTAENATLWIENSHVGEGWKLA 364 (974)
T ss_pred eEEecCcHHHhcCchhHHHHhh-----hh-hhhhccccCCCCc----eEEEeeEecCCcccCCCeEEEEeeEecCCeEEc
Confidence 8899999888865444433210 00 0111111101111 245589999999999 4 458999999999999
Q ss_pred CCCEEcceEE
Q 010874 433 YGVELKDTVM 442 (498)
Q Consensus 433 ~~~~i~~svi 442 (498)
.+|.|.+...
T Consensus 365 ~~~Iisgv~~ 374 (974)
T PRK13412 365 SRSIITGVPE 374 (974)
T ss_pred CCcEEecccc
Confidence 9999988743
No 216
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.03 E-value=1.8e-05 Score=70.59 Aligned_cols=28 Identities=18% Similarity=0.423 Sum_probs=16.9
Q ss_pred ccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 463 VPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 463 ~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
.|+.||++|+|+ +|.| ++.||++++|..
T Consensus 72 ~pV~IG~~~~IG~ga~I--gv~IG~~~vIGa 100 (147)
T cd04649 72 NVISIGKRCLLGANSGI--GISLGDNCIVEA 100 (147)
T ss_pred cCEEECCCCEECCCCEE--eEEECCCCEECC
Confidence 456666666665 5555 466666666654
No 217
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=97.98 E-value=2.9e-05 Score=76.85 Aligned_cols=29 Identities=7% Similarity=0.176 Sum_probs=19.6
Q ss_pred EEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 010874 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (498)
Q Consensus 465 v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~ 494 (498)
|.||.||.| +..||++|+||+|+++...-
T Consensus 232 ~~IGagA~I-GI~IGd~~VVGAGaVVtkgT 260 (319)
T TIGR03535 232 CLLGANSGL-GISLGDDCVVEAGLYVTAGT 260 (319)
T ss_pred cEECCCCEE-CeEECCCCEECCCCEEeCCe
Confidence 455555555 66788888888888776543
No 218
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=97.97 E-value=3.5e-05 Score=76.31 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=25.0
Q ss_pred CCcccEEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 010874 460 EGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 460 ~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 493 (498)
.++.||.||++|.|+ +|.| +..||++++|...
T Consensus 221 g~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAG 253 (319)
T TIGR03535 221 GGKEVISIGERCLLGANSGL--GISLGDDCVVEAG 253 (319)
T ss_pred CCcccEEECCCcEECCCCEE--CeEECCCCEECCC
Confidence 346778899988886 7778 7888888888653
No 219
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.97 E-value=0.0058 Score=67.27 Aligned_cols=222 Identities=14% Similarity=0.155 Sum_probs=127.4
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecC---CcchhHHHHHHHHHhc-----------C-CCeEEEEeccC-chhH
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS-----------G-INKIFVLTQFN-SASL 155 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~---G~~pLId~~L~~l~~s-----------G-i~~I~Vv~~~~-~~~l 155 (498)
..++..|+||||.||||. ..-||.++|++ |+ ++++..++++... + .-..+|.++++ .+..
T Consensus 126 l~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T 201 (615)
T PLN02830 126 AGNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHART 201 (615)
T ss_pred hCcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHH
Confidence 367889999999999998 46799999984 78 8999999997653 1 12467888755 4567
Q ss_pred HHHHHh-hccCCCCc----CCCCeEEEeccc-CCC-CCC----CC-ccccChHHHHHHHH--HHHHhhhcCCCCeEEEEc
Q 010874 156 NRHIAR-TYFGNGTN----FGDGFVEVLAAT-QTP-GES----GK-NWFQGTADAVRQFT--WVFEDAKNRNIENVAILC 221 (498)
Q Consensus 156 ~~hl~~-~~~~~~~~----~~~~~V~v~~~~-q~~-~~~----~~-~~~~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~ 221 (498)
.+++.+ .||+.... |..+.+-.+... -.. -+. .. -.+.|.|+..+... ..+++......+++.+.+
T Consensus 202 ~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~ 281 (615)
T PLN02830 202 LKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQ 281 (615)
T ss_pred HHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEe
Confidence 778864 34543211 111112222110 000 000 00 12467777665553 245555556778999999
Q ss_pred Ccee-eecCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEE--CCCCC----EEEEEeCCCccccccccccccccCC
Q 010874 222 GDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGR----IAQFAEKPSGANLKAMQVDTSLLGF 294 (498)
Q Consensus 222 GD~l-~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~--d~~gr----V~~~~EKp~~~~~~~~~~~~~~~~~ 294 (498)
.|.. ...-.-.++-.+.++++++.+-+.+... ...-|++.. ..+|+ ++.+.|.+.. ++..+.+..-+..
T Consensus 282 vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~l--l~~a~~p~g~l~~ 357 (615)
T PLN02830 282 DTNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPL--LRATGHPDGDVND 357 (615)
T ss_pred ccchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHH--HHhccCCCccccc
Confidence 9993 2322367888899999998887766532 233455443 22344 3355555322 1111111111110
Q ss_pred CccccccCCcceeeeEEEEcHHHHHHHHHh
Q 010874 295 SPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (498)
Q Consensus 295 ~~~~~~~~~~l~~~GIYif~~~vL~~ll~~ 324 (498)
... ....-.|+..-+++-..+.++|+.
T Consensus 358 ~~~---~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 358 ETG---YSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred ccc---cccCCCCceeeEeeHHHHHHHHHh
Confidence 000 011224888899998888887764
No 220
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=97.95 E-value=5e-05 Score=64.68 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=20.2
Q ss_pred eEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEc
Q 010874 407 AIISHGCFLR-ECTVE---HSIVGERSRLDYGVELK 438 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~ 438 (498)
..||++|.|+ ++.|. ...||++|.|++++.|.
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~ 39 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLC 39 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEee
Confidence 3455555555 45443 35778888888777774
No 221
>PLN02739 serine acetyltransferase
Probab=97.92 E-value=3e-05 Score=78.53 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=15.2
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
|.||.|++| +++.||+++.||+|++|.
T Consensus 264 V~IGagA~IlG~V~IGd~aiIGAGSVV~ 291 (355)
T PLN02739 264 ALLGACVTILGNISIGAGAMVAAGSLVL 291 (355)
T ss_pred CEEcCCCEEeCCeEECCCCEECCCCEEC
Confidence 455555544 355566666666666554
No 222
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=97.91 E-value=4.6e-05 Score=64.50 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=16.9
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||+++.| .+++|.+++.|++++.+..
T Consensus 59 ~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~ 87 (109)
T cd04647 59 IVIGDDVWIGANVVILPGVTIGDGAVVGA 87 (109)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECC
Confidence 566666666 4566666666666666543
No 223
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=97.87 E-value=0.00019 Score=67.83 Aligned_cols=115 Identities=20% Similarity=0.352 Sum_probs=79.3
Q ss_pred eEEEEEeCCC-CCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCch--hHHHHHHhhccCCCCcC
Q 010874 95 VAAIILGGGA-GTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSA--SLNRHIARTYFGNGTNF 170 (498)
Q Consensus 95 m~aVILAaG~-GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~--~l~~hl~~~~~~~~~~~ 170 (498)
|-++|+.|-. +|||.. |.|+|++|. |||+++|+++..+. +++|+|.|+...+ .|..+.. . .
T Consensus 3 ~I~~IiQARmgStRLpg------KvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~-~-------~ 67 (241)
T COG1861 3 MILVIIQARMGSTRLPG------KVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCR-S-------H 67 (241)
T ss_pred cEEEEeeecccCccCCc------chhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHH-H-------c
Confidence 3455555555 578875 999999999 99999999999875 7899999986543 3444432 1 1
Q ss_pred CCCeEEEecccCCCCCCCCccccChH-HHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecCH-HHHHHHHHHcCCCe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTA-DAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDY-MDFIQSHVDRDADI 244 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta-~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~dl-~~ll~~h~~~~ad~ 244 (498)
| +.++ +|.+ +.|..+...++. ...+.++=+.||. +.+.++ ..+++.|-++|+|.
T Consensus 68 G---~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 68 G---FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred C---eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 2 3333 2444 555555555542 3446888899999 555554 77889999998873
No 224
>PRK10191 putative acyl transferase; Provisional
Probab=97.87 E-value=7.9e-05 Score=67.19 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=14.4
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||.++.|. ++.||+++.||+++++..
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~~ 127 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVLD 127 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 4455444443 355555555555555543
No 225
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.00042 Score=72.55 Aligned_cols=213 Identities=17% Similarity=0.309 Sum_probs=127.4
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecC-CcchhHHHHHHHHHh----cCCC-eEEEEeccCchhHHHH-HHhhcc
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCIN----SGIN-KIFVLTQFNSASLNRH-IARTYF 164 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~-G~~pLId~~L~~l~~----sGi~-~I~Vv~~~~~~~l~~h-l~~~~~ 164 (498)
-.++.+|+||||+||||. ..-||.+++|. |+ ++++.+.+.+.. .+++ ..+|.++.+.++-..+ ....|+
T Consensus 103 ~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~ 178 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYF 178 (472)
T ss_pred cCceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhc
Confidence 567899999999999998 46799999999 77 999999888765 3432 4677788887544444 345565
Q ss_pred CCCC-c---CCCCeEE-EecccCCC---CCCC-Ccc-ccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceee-ecCHH
Q 010874 165 GNGT-N---FGDGFVE-VLAATQTP---GESG-KNW-FQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLY-RMDYM 231 (498)
Q Consensus 165 ~~~~-~---~~~~~V~-v~~~~q~~---~~~~-~~~-~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~GD~l~-~~dl~ 231 (498)
+... + |.+..+- +...+..+ .... ..| +.|.|+-...... .+++......+.+.|.+.|.+. ..|+
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~- 257 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL- 257 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH-
Confidence 5311 1 1111111 11110000 0000 123 4677665444432 4444444577999999999965 3454
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCceEEE-ECCCCCEEEEEeCCCccccccccccccccCCCccccccCCccee-ee
Q 010874 232 DFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-MG 309 (498)
Q Consensus 232 ~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~-~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G 309 (498)
.++..|.+.+.+.++=++.-.... .+-|++. .|+.-||+.+.|-|......-+. .........+ .+
T Consensus 258 ~~lg~~~~~~~e~~~e~t~Kt~a~-ekvG~Lv~~~g~~rllEysev~~~~~~~~~s-----------~~~~~~~n~Nni~ 325 (472)
T COG4284 258 KFLGFMAETNYEYLMETTDKTKAD-EKVGILVTYDGKLRLLEYSEVPNEHREEFTS-----------DGKLKYFNTNNIW 325 (472)
T ss_pred HHHHHHHhcCcceeEEEeeccccc-ccceEEEEeCCceEEEEEecCChhHhhhhcc-----------ccceeeeccccce
Confidence 467888888988877655433211 3456655 78778999998877642211000 0001113344 78
Q ss_pred EEEEcHHHHHHH
Q 010874 310 VYVFKKDVLFKL 321 (498)
Q Consensus 310 IYif~~~vL~~l 321 (498)
+|+++-+.|.+.
T Consensus 326 l~~~~~~~l~~~ 337 (472)
T COG4284 326 LHLFSVKFLKEA 337 (472)
T ss_pred eehhHHHHHHhh
Confidence 888888877643
No 226
>PRK10191 putative acyl transferase; Provisional
Probab=97.87 E-value=6.8e-05 Score=67.64 Aligned_cols=66 Identities=14% Similarity=0.277 Sum_probs=38.6
Q ss_pred ceEEcCCCEEC-ceEEe--------ccEECCCCEECCCCEEcc-eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEee
Q 010874 406 DAIISHGCFLR-ECTVE--------HSIVGERSRLDYGVELKD-TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~--------~siIg~~~~Ig~~~~i~~-svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~ 475 (498)
++.||++|.|+ +++|. .++||++|.||+++.|.+ ..+.++ +.||.++.+.+
T Consensus 67 ~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~-------------------~~Igags~V~~ 127 (146)
T PRK10191 67 NVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNN-------------------VTVGAGSVVLD 127 (146)
T ss_pred CcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCC-------------------CEECCCCEECC
Confidence 35555555555 44442 247788888887777754 333333 67777777766
Q ss_pred eEECCCCEECCCcEE
Q 010874 476 CIIDKNVKIGKDVVI 490 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i 490 (498)
.+-.....+|..+.+
T Consensus 128 dv~~~~~v~G~pA~~ 142 (146)
T PRK10191 128 SVPDNALVVGEKARV 142 (146)
T ss_pred ccCCCcEEEccCcEE
Confidence 555555555555443
No 227
>PLN02357 serine acetyltransferase
Probab=97.86 E-value=6.5e-05 Score=76.69 Aligned_cols=89 Identities=10% Similarity=0.216 Sum_probs=55.9
Q ss_pred CCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEEe---------ccEECCCCEECCCCEEcceE-EeCCccccch
Q 010874 387 FYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTVE---------HSIVGERSRLDYGVELKDTV-MLGADYYQTE 451 (498)
Q Consensus 387 i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v~---------~siIg~~~~Ig~~~~i~~sv-i~~~~~~~~~ 451 (498)
|+..++|+.++.|. ++.|. +++||++|.|. +++|. +++||++|.||.|+.|.+.+ |.++
T Consensus 229 I~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdg------ 302 (360)
T PLN02357 229 IHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEG------ 302 (360)
T ss_pred eCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCC------
Confidence 44455555555553 23343 35666666665 44442 57899999999998885444 4444
Q ss_pred hHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 010874 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (498)
Q Consensus 452 ~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~ 494 (498)
+.||.+++|...+-...+.+|.-+.+.+..
T Consensus 303 -------------a~IGAgSVV~~dVP~~~~v~G~PArvv~~~ 332 (360)
T PLN02357 303 -------------AKIGAGSVVLKDVPPRTTAVGNPARLIGGK 332 (360)
T ss_pred -------------CEECCCCEECcccCCCcEEECCCeEEEccC
Confidence 788888888766555555666666665543
No 228
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.85 E-value=0.00067 Score=68.63 Aligned_cols=215 Identities=12% Similarity=0.144 Sum_probs=124.6
Q ss_pred EEEEEeCCCCCcccCCccCCCccceec---CCcchhHHHHHHHHHhcC--------C-CeEEEEeccC-chhHHHHHHh-
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCINSG--------I-NKIFVLTQFN-SASLNRHIAR- 161 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI---~G~~pLId~~L~~l~~sG--------i-~~I~Vv~~~~-~~~l~~hl~~- 161 (498)
.+|+||||.||||. ..-||.++|| .|+ .++++..+++.... . =..+|.++.. .++..+++.+
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47899999999998 5789999999 488 89999999986532 1 2457788744 5677788864
Q ss_pred hccCCCCc----CCCCeEEEec-ccCCC---CCC---CCccccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceee-e
Q 010874 162 TYFGNGTN----FGDGFVEVLA-ATQTP---GES---GKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-R 227 (498)
Q Consensus 162 ~~~~~~~~----~~~~~V~v~~-~~q~~---~~~---~~~~~~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~GD~l~-~ 227 (498)
.||+.... |.++.+-.+. .+... .+. -...+.|.|+..+... ..+++......+++.+..-|... .
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 34543211 1112222221 10000 000 0012568887766553 23454445667888888888843 3
Q ss_pred cCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEE-C-CCCC--E--EEEEeCCCccccc---cccccccccCCCccc
Q 010874 228 MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-D-NMGR--I--AQFAEKPSGANLK---AMQVDTSLLGFSPQE 298 (498)
Q Consensus 228 ~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~-d-~~gr--V--~~~~EKp~~~~~~---~~~~~~~~~~~~~~~ 298 (498)
.-.-.++-.+.++++++...+.+... .+.-|++.. + .+|+ | +.+.|-+...... ...++. -.++
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~-~~~~---- 230 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDD-KTGF---- 230 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccc-cccc----
Confidence 33345566677788888876665332 234665542 2 3343 4 6665544211100 000000 0111
Q ss_pred cccCCcceeeeEEEEcHHHHHHHHHh
Q 010874 299 ARKCPYVASMGVYVFKKDVLFKLLRW 324 (498)
Q Consensus 299 ~~~~~~l~~~GIYif~~~vL~~ll~~ 324 (498)
...-.++++++|+-+.+.+.++.
T Consensus 231 ---s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 231 ---SPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred ---ccCCCeeeeEEEeHHHHHHHHhh
Confidence 23578999999999988877764
No 229
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=97.84 E-value=4.2e-05 Score=72.95 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=29.0
Q ss_pred CCCCCCCccCCCeEec-Ceeeec-eEEcCCCEEC-ceEE-eccEECCCCEECCCCEEc
Q 010874 385 TPFYTSPRFLPPTKID-NCRIKD-AIISHGCFLR-ECTV-EHSIVGERSRLDYGVELK 438 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~-~~~I~~-s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~ 438 (498)
+.|++.+.|+|+++|. +++|++ |+||+++.|+ ++.| .|.+|--.++||.+++|-
T Consensus 4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~ 61 (260)
T COG1043 4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIF 61 (260)
T ss_pred cccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEe
Confidence 4566666777766663 455543 5555555555 4444 244555555555554443
No 230
>PLN02694 serine O-acetyltransferase
Probab=97.82 E-value=7.2e-05 Score=74.35 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=29.3
Q ss_pred CCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEE---------eccEECCCCEECCCCEE-cceEEeCC
Q 010874 387 FYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTV---------EHSIVGERSRLDYGVEL-KDTVMLGA 445 (498)
Q Consensus 387 i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v---------~~siIg~~~~Ig~~~~i-~~svi~~~ 445 (498)
|+..++|+++++|+ +..|+ ++.||++|.|. ++++ .+++||++|.||.||.| .++.|.++
T Consensus 163 I~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~ 236 (294)
T PLN02694 163 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEG 236 (294)
T ss_pred eCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCC
Confidence 34444455555543 23333 24444444444 3333 24677777777777766 34444333
No 231
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=97.82 E-value=9.2e-05 Score=58.32 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=15.4
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEE
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVI 490 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i 490 (498)
+.|+.++.|. ++.|++++.|++++.|
T Consensus 51 ~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 51 VEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred cEECCCCEEeCCCEECCCCEECcCcEe
Confidence 4555555553 4666666777666655
No 232
>PRK10502 putative acyl transferase; Provisional
Probab=97.80 E-value=4.5e-05 Score=71.51 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=13.4
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
+.||.++.| .++.||+++.||+++++.
T Consensus 131 ~~Ig~~a~I~~Gv~Ig~~~vIga~svV~ 158 (182)
T PRK10502 131 CWLAADVFVAPGVTIGSGAVVGARSSVF 158 (182)
T ss_pred cEEcCCCEEcCCCEECCCCEECCCCEEe
Confidence 444444444 245555555555555543
No 233
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.77 E-value=8.2e-05 Score=69.13 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=16.7
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
|.||.|++| ++-.||+|++||+|+++.
T Consensus 126 V~IGagAkILG~I~IGd~akIGA~sVVl 153 (194)
T COG1045 126 VYIGAGAKILGNIEIGDNAKIGAGSVVL 153 (194)
T ss_pred eEECCCCEEEcceEECCCCEECCCceEc
Confidence 566666544 455566666666666654
No 234
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.77 E-value=0.00096 Score=62.03 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=60.1
Q ss_pred CCccceecCC--cchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccc
Q 010874 115 AATPAVPVAG--CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (498)
Q Consensus 115 ~PK~LlpI~G--~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~ 192 (498)
.+|+|++++| + |||+|+++.+. +.+++|+|+++... .+ . ..+ +.++. +...+
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~~-----~-------~~~---~~~i~-d~~~g------- 56 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-PL-----P-------ELP---APVLR-DELRG------- 56 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-cc-----c-------cCC---CCEec-cCCCC-------
Confidence 4899999999 9 99999999875 56899999997542 11 0 111 23443 22221
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecC-HHHHHHHHHH
Q 010874 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVD 239 (498)
Q Consensus 193 ~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~d-l~~ll~~h~~ 239 (498)
+|...++..++..... ...+.++|+.||+ +.+.+ +..+++.+..
T Consensus 57 ~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 57 LGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred CCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 4666655544433211 1347899999999 44444 5666665433
No 235
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=97.69 E-value=0.0002 Score=71.03 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=30.9
Q ss_pred CCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEEe---------ccEECCCCEECCCCEEcceE
Q 010874 387 FYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTVE---------HSIVGERSRLDYGVELKDTV 441 (498)
Q Consensus 387 i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v~---------~siIg~~~~Ig~~~~i~~sv 441 (498)
|++.+.|++++.|+ +..|+ ++.||++|.|. +++|. +.+||++|.||.||.|.+.+
T Consensus 144 I~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv 212 (273)
T PRK11132 144 IHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNI 212 (273)
T ss_pred ecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCC
Confidence 34455555555553 23332 35566666665 44443 35777777777777775443
No 236
>PLN02739 serine acetyltransferase
Probab=97.67 E-value=0.00021 Score=72.45 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=32.0
Q ss_pred CCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEEe---------ccEECCCCEECCCCEEcce
Q 010874 387 FYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTVE---------HSIVGERSRLDYGVELKDT 440 (498)
Q Consensus 387 i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v~---------~siIg~~~~Ig~~~~i~~s 440 (498)
|+..+.|+.++.|. ++.|. +++||++|.|. +++|. +.+||++|.||.|+.|-+.
T Consensus 208 I~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~ 275 (355)
T PLN02739 208 IHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGN 275 (355)
T ss_pred cCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCC
Confidence 44555566666663 34443 46666666665 55552 4677777777777766443
No 237
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=97.54 E-value=0.0003 Score=59.11 Aligned_cols=17 Identities=12% Similarity=0.372 Sum_probs=9.2
Q ss_pred cEECCCCEECCCCEEcc
Q 010874 423 SIVGERSRLDYGVELKD 439 (498)
Q Consensus 423 siIg~~~~Ig~~~~i~~ 439 (498)
++||++|.|+.++.+..
T Consensus 55 ~~Ig~~~~Ig~~~~i~~ 71 (101)
T cd03354 55 PTIGDNVVIGAGAKILG 71 (101)
T ss_pred CEECCCcEEcCCCEEEC
Confidence 34555555555555543
No 238
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=97.53 E-value=0.00051 Score=68.57 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=22.7
Q ss_pred hhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 457 LLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 457 ~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+-+.++.||.||++|.|+ +|.| +..||++++|..
T Consensus 243 LsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGA 277 (341)
T TIGR03536 243 LSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEA 277 (341)
T ss_pred EeCCCceeEEECCCcEECCCCEE--eeEECCCCEECC
Confidence 345556667777777775 6666 677777777754
No 239
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=97.49 E-value=0.00047 Score=64.66 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=7.5
Q ss_pred eeEECCCCEECCCcEE
Q 010874 475 NCIIDKNVKIGKDVVI 490 (498)
Q Consensus 475 ~~iI~~~~~Ig~~~~i 490 (498)
++.||+++.||+++++
T Consensus 147 gv~IG~~~vIgagsvV 162 (183)
T PRK10092 147 GVTIGDNVVVASGAVV 162 (183)
T ss_pred CCEECCCCEECCCCEE
Confidence 3444444444444444
No 240
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=97.47 E-value=0.00057 Score=65.12 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=14.1
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.++.|. ++.||+++.||+++++..
T Consensus 138 v~IG~~~~I~~gv~IG~~~vIgagsvV~k 166 (203)
T PRK09527 138 VWIGSHVVINPGVTIGDNSVIGAGSVVTK 166 (203)
T ss_pred cEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 3344433332 455566666666665543
No 241
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=97.43 E-value=0.00097 Score=63.02 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=17.0
Q ss_pred EEeCCCcEEe-------eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-------NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-------~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||++++|+ +++||+++.||+++++..
T Consensus 131 v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~ 165 (192)
T PRK09677 131 VVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTK 165 (192)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCCEECCCCEECc
Confidence 5666666663 566666666666666653
No 242
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=97.43 E-value=0.0013 Score=60.84 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=26.4
Q ss_pred CCccCCCeEec-Ceeee---ceEEcCCCEEC-ceEEe-------------------ccEECCCCEECCCCEE
Q 010874 390 SPRFLPPTKID-NCRIK---DAIISHGCFLR-ECTVE-------------------HSIVGERSRLDYGVEL 437 (498)
Q Consensus 390 ~~~i~~~~~i~-~~~I~---~s~Ig~~~~I~-~~~v~-------------------~siIg~~~~Ig~~~~i 437 (498)
+..++++++|. ++.|. +..||++|.|+ ++.|. .++||++|.||.+|.|
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I 133 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVII 133 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEE
Confidence 34445555552 23332 46677777777 66662 3456666666666555
No 243
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.30 E-value=0.00074 Score=60.89 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=16.6
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.++.| .++.|++++.||++++|..
T Consensus 80 ~~Ig~~~~i~~gv~Ig~~~vIgags~V~~ 108 (145)
T cd03349 80 VWIGHGATILPGVTIGDGAVIAAGAVVTK 108 (145)
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 444444444 3566777777777776654
No 244
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.21 E-value=0.0012 Score=61.84 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=50.2
Q ss_pred ceEEcCCCEEC-ceEE---eccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECC
Q 010874 406 DAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDK 480 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v---~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~ 480 (498)
+..||.+|.++ ++.+ .+..||+++.|+++|.|... .+.........-.....-|+.||++++|+ +++|.+
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~-----~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~Ilp 141 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN-----SHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILP 141 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC-----CCCCChhhcccCCceecCCeEECCCeEEcCccEECC
Confidence 56777777777 5543 24557777777777777653 11111111111112333458999999996 677777
Q ss_pred CCEECCCcEEeCC
Q 010874 481 NVKIGKDVVIVNK 493 (498)
Q Consensus 481 ~~~Ig~~~~i~~~ 493 (498)
+++||+|++|...
T Consensus 142 GV~IG~gavigag 154 (190)
T COG0110 142 GVTIGEGAVIGAG 154 (190)
T ss_pred CEEECCCcEEeeC
Confidence 7777777776653
No 245
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=97.20 E-value=0.0022 Score=54.47 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=13.9
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
+.||.++.|. ++.|++++.|++++.+.
T Consensus 63 ~~ig~~~~i~~g~~Ig~~~~i~~gs~v~ 90 (107)
T cd05825 63 AWVAAEAFVGPGVTIGEGAVVGARSVVV 90 (107)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEEe
Confidence 4444444442 45555555555555554
No 246
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=97.19 E-value=0.0011 Score=64.61 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=22.3
Q ss_pred CCccCCCeEecCeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcce
Q 010874 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDT 440 (498)
Q Consensus 390 ~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~s 440 (498)
++||.|++.+.. .++||+|++|- ++.|. ++.++.++-|.-++.+..|
T Consensus 108 g~RI~p~a~VR~----ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~ 156 (271)
T COG2171 108 GVRIVPGAIVRL----GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSC 156 (271)
T ss_pred ceeecCccEEee----ccEECCCcEEcccceEEECcccCcceEEeeeeeeecc
Confidence 455555555432 24555555554 34442 4444444444444444444
No 247
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.13 E-value=0.0024 Score=59.51 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=37.7
Q ss_pred CCCCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEE---------eccEECCCCEECCCCEEcceEEeC
Q 010874 385 TPFYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTV---------EHSIVGERSRLDYGVELKDTVMLG 444 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v---------~~siIg~~~~Ig~~~~i~~svi~~ 444 (498)
..|++.+.|+++..|+ +..|. .++||++|.|. ++++ .|-.||+++.||+||.|-+.+-.+
T Consensus 68 ieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IG 141 (194)
T COG1045 68 IEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIG 141 (194)
T ss_pred eeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEEC
Confidence 3456667777777764 23332 46666666665 4444 255899999999998875544433
No 248
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.11 E-value=0.0011 Score=58.73 Aligned_cols=105 Identities=11% Similarity=0.265 Sum_probs=61.2
Q ss_pred CCCccCCCeEe-cCeeee-ceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEcc----eEEeCC----------cc
Q 010874 389 TSPRFLPPTKI-DNCRIK-DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKD----TVMLGA----------DY 447 (498)
Q Consensus 389 ~~~~i~~~~~i-~~~~I~-~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~~----svi~~~----------~~ 447 (498)
+++.|.|.+.+ ..+.|+ +.+|++||++. .+++. --+||+++.|.+.+.|.+ ..+|+. ..
T Consensus 7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~Nv 86 (190)
T KOG4042|consen 7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNV 86 (190)
T ss_pred ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccce
Confidence 45667777776 456664 89999999998 55553 458999999999888866 223332 22
Q ss_pred ccchhHH-HHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeCCCCC
Q 010874 448 YQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDES 496 (498)
Q Consensus 448 ~~~~~~~-~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v 496 (498)
++-+... +..+++. -.|+..++++ +|++.++|.||+++.+-..+.+
T Consensus 87 FeVgc~s~A~kvGd~---NVieskayvg~gv~vssgC~vGA~c~v~~~q~l 134 (190)
T KOG4042|consen 87 FEVGCKSSAKKVGDR---NVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNL 134 (190)
T ss_pred EEeechhhhhhhcCc---ceEeeeeEecCCcEEcCCceeccceEEeccccc
Confidence 2222222 3334444 2344444443 4555556666666655554443
No 249
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.03 E-value=0.0006 Score=45.87 Aligned_cols=33 Identities=12% Similarity=0.387 Sum_probs=21.4
Q ss_pred ceEEcCCCEEC-ceEE-eccEECCCCEECCCCEEc
Q 010874 406 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELK 438 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~ 438 (498)
++.||++|+|+ ++.| .++.||++|.|++++.|.
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 35677777777 5654 367777777777777664
No 250
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=96.92 E-value=0.0018 Score=64.70 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=36.7
Q ss_pred cCeeeec-eEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCc
Q 010874 400 DNCRIKD-AIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGAD 446 (498)
Q Consensus 400 ~~~~I~~-s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~ 446 (498)
++|.|++ ++||.+|+|+ ++.+++|+|..++.++..+.|..+++..+.
T Consensus 275 ~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~ 323 (371)
T KOG1322|consen 275 ENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNV 323 (371)
T ss_pred CccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccc
Confidence 4577774 8888888888 778888888888888888888877776653
No 251
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=96.90 E-value=0.0011 Score=44.25 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=16.4
Q ss_pred eEEcCCCEEC-ceEEeccEECCCCEECCCCEE
Q 010874 407 AIISHGCFLR-ECTVEHSIVGERSRLDYGVEL 437 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i 437 (498)
..||++|+|+ +|.| ...||++|.|++|+.|
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 4677777777 5555 4666666666666665
No 252
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=96.87 E-value=0.0029 Score=71.27 Aligned_cols=82 Identities=13% Similarity=0.327 Sum_probs=41.9
Q ss_pred ceEEcCCCEECc-eEEe--ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEE-eeeEECCC
Q 010874 406 DAIISHGCFLRE-CTVE--HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKN 481 (498)
Q Consensus 406 ~s~Ig~~~~I~~-~~v~--~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i-~~~iI~~~ 481 (498)
.+.||++|.|+. ..++ .+.||++|.|+++|.|.. ..+++..+.- -...++++ +.||.+++| .++.||++
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~-h~~~~~~~~~---~~v~IG~~---~~IG~~a~V~~g~~IGd~ 669 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQT-HLFEDRVMKS---DTVTIGDG---ATLGPGAIVLYGVVMGEG 669 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEe-cccccccccc---CCeEECCC---CEECCCCEECCCCEECCC
Confidence 355666666663 2232 257888888888877754 2222211100 01222233 444444444 35666666
Q ss_pred CEECCCcEEeCCC
Q 010874 482 VKIGKDVVIVNKD 494 (498)
Q Consensus 482 ~~Ig~~~~i~~~~ 494 (498)
+.||+++.+...+
T Consensus 670 a~Ig~~SvV~~g~ 682 (695)
T TIGR02353 670 SVLGPDSLVMKGE 682 (695)
T ss_pred CEECCCCEEcCCc
Confidence 6666666665433
No 253
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=96.82 E-value=0.0018 Score=56.88 Aligned_cols=50 Identities=16% Similarity=0.340 Sum_probs=24.7
Q ss_pred EECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 424 IVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 424 iIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
.||+++.|+++|++.-+.|..- |.+|.|+.|+ .|++-+-++|-+++++..
T Consensus 86 hiGdhVFieE~cVVnAAqIgsy-------------------Vh~GknaviGrrCVlkdCc~ild~tVlPp 136 (184)
T KOG3121|consen 86 HIGDHVFIEEECVVNAAQIGSY-------------------VHLGKNAVIGRRCVLKDCCRILDDTVLPP 136 (184)
T ss_pred eecceEEEecceEeehhhheee-------------------eEeccceeEcCceEhhhheeccCCcccCc
Confidence 4555555555555554444433 4555555553 344444444444444433
No 254
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=96.77 E-value=0.0038 Score=70.27 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=13.6
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
+.||.+|.| .++.||+++.|++++.+.
T Consensus 167 ~~IG~~s~I~~g~~Igd~a~vgagS~V~ 194 (695)
T TIGR02353 167 AFIGTRSTLDIDTSIGDGAQLGHGSALQ 194 (695)
T ss_pred cEECCCCEEcCCCEECCCCEECCCCEec
Confidence 444444444 345555555555555544
No 255
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.72 E-value=0.14 Score=52.98 Aligned_cols=357 Identities=15% Similarity=0.207 Sum_probs=170.6
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc----CCC-eEEEEeccCchhHHHHHHhhccCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFNSASLNRHIARTYFGN 166 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s----Gi~-~I~Vv~~~~~~~l~~hl~~~~~~~ 166 (498)
.+++..+=|-||.||-|. -.-||.+++|-+-+..+|-++.+..+. +++ -.++..+++.++--+.+.+.|.+.
T Consensus 101 L~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~ 177 (498)
T KOG2638|consen 101 LNKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGS 177 (498)
T ss_pred hhheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCC
Confidence 355666779999999998 568999999987668888776665542 333 345556677654444444566332
Q ss_pred CC--------cCCCCeE-EEecccCCCCC-CCCccc-cChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceee-ecCHHH
Q 010874 167 GT--------NFGDGFV-EVLAATQTPGE-SGKNWF-QGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-RMDYMD 232 (498)
Q Consensus 167 ~~--------~~~~~~V-~v~~~~q~~~~-~~~~~~-~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~GD~l~-~~dl~~ 232 (498)
.. +|..-.. +.++.....++ +...|| -|.|+-..... ..++.......|.++|-+.|.+. ..||.
T Consensus 178 kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~- 256 (498)
T KOG2638|consen 178 KVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN- 256 (498)
T ss_pred ceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH-
Confidence 21 1221111 12332221111 224565 57766544332 23333334567999999999986 45653
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEE
Q 010874 233 FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYV 312 (498)
Q Consensus 233 ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYi 312 (498)
+++...+.+....|-+++-...+...-.++..+..-|.+.+..-|.....+=+.+ . .=.+.++.--.
T Consensus 257 ILn~~i~~~~ey~MEvTdKT~aDvKgGtLi~y~G~lrlLEiaQVP~ehv~eFkS~-------k------kFkifNTNNlW 323 (498)
T KOG2638|consen 257 ILNHVINNNIEYLMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSI-------K------KFKIFNTNNLW 323 (498)
T ss_pred HHHHHhcCCCceEEEecccchhhcccceEEeecCEEEEEEeccCChhHhhhhccc-------e------eEEEeccCCeE
Confidence 4555555666665555443221111122333433334455544444321100000 0 01345566566
Q ss_pred EcHHHHHHHHHhhCCCC--------Cchhhhh------HHHHhhc--CceEEEEEcceEeecCCHHHHHHHHHHhhccCC
Q 010874 313 FKKDVLFKLLRWRYPTS--------NDFGSEI------IPAAIME--HDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376 (498)
Q Consensus 313 f~~~vL~~ll~~~~~~~--------~df~~di------i~~~i~~--~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~ 376 (498)
++-..++++++...-.. -+...++ +-.+++. ..+....-...+..+.+-.|++.....|..-..
T Consensus 324 inLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~ld~ 403 (498)
T KOG2638|consen 324 INLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDLDN 403 (498)
T ss_pred EehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeeccC
Confidence 66677777776521100 0101111 1222222 111111112345556666666555444432211
Q ss_pred C-ccccCCCCCCCCCCccCCCeEecC--eeeeceEEcCCCEECc-eEEeccEECCCCEECCCCEEcceEEeCCccccchh
Q 010874 377 A-FHFYDPKTPFYTSPRFLPPTKIDN--CRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTES 452 (498)
Q Consensus 377 ~-~~~~~~~~~i~~~~~i~~~~~i~~--~~I~~s~Ig~~~~I~~-~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~ 452 (498)
. +.. .+.....+.+.+ ++++ .+|.. +.+.--.|-. -.+.|=.|.-++..|.++.++++||.-+
T Consensus 404 Gsl~l-~~~r~~~t~P~v----kLg~~F~kv~~-f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkGtViIia------- 470 (498)
T KOG2638|consen 404 GSLTL-SPSRFGPTPPLV----KLGSEFKKVED-FLGRFPGIPDILELDHLTVSGDVWFGKNVSLKGTVIIIA------- 470 (498)
T ss_pred CeEEe-chhhcCCCCCee----ecchhhhHHHH-HHhcCCCCCccceeceEEEeccEEeccceEEeeEEEEEe-------
Confidence 1 110 111111111111 1111 01100 0000000000 1223456666788888888888877543
Q ss_pred HHHHhhcCCcccEEeCCCcEEeeeEECCCCEEC
Q 010874 453 EIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (498)
Q Consensus 453 ~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig 485 (498)
+...+..|.+|+++.|++|-.|.+|-
T Consensus 471 -------~~~~~i~IP~gsVLEn~~v~gn~~il 496 (498)
T KOG2638|consen 471 -------NEGDRIDIPDGSVLENKIVSGNLRIL 496 (498)
T ss_pred -------cCCCeeecCCCCeeecceEecccccc
Confidence 12223778889999888888777764
No 256
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.65 E-value=0.0056 Score=58.24 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=55.2
Q ss_pred eeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEEC
Q 010874 402 CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 479 (498)
Q Consensus 402 ~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~ 479 (498)
+.++-.++|+...++ ++.|...+++.+++|+.+|.+.+.++.+++ ..||+++.|+ .-++.
T Consensus 29 S~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~ 90 (277)
T COG4801 29 SMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVI 90 (277)
T ss_pred ceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEe
Confidence 444455666666667 677778888899999999999888888876 7888888886 34555
Q ss_pred CCCEECCCcEEeCC
Q 010874 480 KNVKIGKDVVIVNK 493 (498)
Q Consensus 480 ~~~~Ig~~~~i~~~ 493 (498)
..-.||+++.|.+.
T Consensus 91 gdLdig~dV~Iegg 104 (277)
T COG4801 91 GDLDIGADVIIEGG 104 (277)
T ss_pred cccccccceEEecC
Confidence 56777777777653
No 257
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.27 E-value=0.0069 Score=40.58 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=13.8
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
+.|++++.| .+|.||+++.|++++.|.
T Consensus 8 ~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 8 VIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 444444443 245556666666666654
No 258
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.17 E-value=0.014 Score=55.59 Aligned_cols=64 Identities=25% Similarity=0.363 Sum_probs=49.5
Q ss_pred ceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEE
Q 010874 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 484 (498)
Q Consensus 406 ~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~I 484 (498)
+.+||+++.+ +..++|....+|+++.|.+.++-.+ +.|+.+|.+. |.++..++.|
T Consensus 22 dViIG~nS~l-----~~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayi 77 (277)
T COG4801 22 DVIIGKNSML-----KYGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYI 77 (277)
T ss_pred cEEEccccee-----eeeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEE
Confidence 5566666555 4468888888888888888888866 8899888884 7778888888
Q ss_pred CCCcEEeCC
Q 010874 485 GKDVVIVNK 493 (498)
Q Consensus 485 g~~~~i~~~ 493 (498)
|+++.|.+.
T Consensus 78 GE~~sI~gk 86 (277)
T COG4801 78 GEFSSIKGK 86 (277)
T ss_pred eccceeeee
Confidence 888887653
No 259
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=96.08 E-value=0.022 Score=51.28 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=25.3
Q ss_pred cEEeCCCcEEe-eeEECCCCEECCCcEEeCCCC
Q 010874 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 464 ~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
++.||++|+|+ +|+|..+++||++++|....-
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~ 105 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAV 105 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCE
Confidence 37888888886 788888888888888876543
No 260
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=95.72 E-value=0.012 Score=51.72 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=17.4
Q ss_pred ceEEcCCCEEC-ceEEeccEECCCCEECCCCEE
Q 010874 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVEL 437 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i 437 (498)
+..||+.++|+ +|.|.-..||.-+++|.+|.|
T Consensus 84 p~hiGdhVFieE~cVVnAAqIgsyVh~Gknavi 116 (184)
T KOG3121|consen 84 PVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVI 116 (184)
T ss_pred eeeecceEEEecceEeehhhheeeeEeccceeE
Confidence 45566666666 565554455544444444444
No 261
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.22 E-value=0.44 Score=40.82 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=65.7
Q ss_pred ceecCCcchhHHHHHHHHHhcC--CCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChH
Q 010874 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sG--i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta 196 (498)
++|..|..+++.++++++.+.+ ..+|+|+.+...+...+.+.+.. .. .. . +....... ..|.+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~--~~--~-~~~~~~~~---------~~g~~ 66 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYA-KK--DP--R-VIRVINEE---------NQGLA 66 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHH-hc--CC--C-eEEEEecC---------CCChH
Confidence 4566666689999999999987 78999998877776666664322 10 00 1 22222111 15888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCH-HHHHHHH
Q 010874 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSH 237 (498)
Q Consensus 197 ~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl-~~ll~~h 237 (498)
.++..+..... .+.++++.+|.++..++ ..++..+
T Consensus 67 ~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 67 AARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred HHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHH
Confidence 99988876653 57899999999988775 4443443
No 262
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=95.07 E-value=0.041 Score=36.65 Aligned_cols=14 Identities=7% Similarity=0.283 Sum_probs=6.3
Q ss_pred EECCCCEECCCCEE
Q 010874 424 IVGERSRLDYGVEL 437 (498)
Q Consensus 424 iIg~~~~Ig~~~~i 437 (498)
.||++|.||++|.|
T Consensus 3 ~IG~~~~ig~~~~i 16 (34)
T PF14602_consen 3 TIGDNCFIGANSTI 16 (34)
T ss_dssp EE-TTEEE-TT-EE
T ss_pred EECCCEEECccccc
Confidence 45666666655554
No 263
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=94.98 E-value=0.042 Score=52.19 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=8.7
Q ss_pred eeEECCCCEECCCcEE
Q 010874 475 NCIIDKNVKIGKDVVI 490 (498)
Q Consensus 475 ~~iI~~~~~Ig~~~~i 490 (498)
|..||+|+.|++|+++
T Consensus 218 nV~IGegavIaAGsvV 233 (269)
T KOG4750|consen 218 NVTIGEGAVIAAGSVV 233 (269)
T ss_pred CeeECCCcEEeccceE
Confidence 4455555555555544
No 264
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=94.63 E-value=0.13 Score=47.84 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=11.2
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEE
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVI 490 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i 490 (498)
|-||.++.|- +..||+++.||+++++
T Consensus 131 vwIG~~a~IlpGV~IG~gavigagsVV 157 (190)
T COG0110 131 VWIGAGAVILPGVTIGEGAVIGAGSVV 157 (190)
T ss_pred eEEcCccEECCCEEECCCcEEeeCCEE
Confidence 4444444432 3444444444444443
No 265
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=94.61 E-value=0.15 Score=47.90 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHH
Q 010874 127 RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVF 206 (498)
Q Consensus 127 pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i 206 (498)
|||.|+++.+..+++.+|+|+++. +.+.+++. .++ ++++...+ .|.+.+++.+...+
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~--------~~~---v~~i~~~~----------~G~~~si~~al~~~ 87 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAAR--------NLG---APVLRDPG----------PGLNNALNAALAEA 87 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHH--------hcC---CEEEecCC----------CCHHHHHHHHHHHh
Confidence 899999999999888889888874 34433332 122 34443211 28999999997665
Q ss_pred HhhhcCCCCeEEEEcCce--eeecCHHHHHHHH
Q 010874 207 EDAKNRNIENVAILCGDH--LYRMDYMDFIQSH 237 (498)
Q Consensus 207 ~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h 237 (498)
.. ..+.++++.||+ +...++.++++..
T Consensus 88 ~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~ 116 (195)
T TIGR03552 88 RE----PGGAVLILMADLPLLTPRELKRLLAAA 116 (195)
T ss_pred hc----cCCeEEEEeCCCCCCCHHHHHHHHHhc
Confidence 41 235799999998 3345677777765
No 266
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=94.29 E-value=0.1 Score=49.69 Aligned_cols=26 Identities=38% Similarity=0.495 Sum_probs=10.8
Q ss_pred EeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 466 GVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 466 ~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
+||+|+.|+ .+.|-.|++||+|++|.
T Consensus 202 ~Igd~vliGaGvtILgnV~IGegavIa 228 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGNVTIGEGAVIA 228 (269)
T ss_pred cccCCeEEccccEEeCCeeECCCcEEe
Confidence 444444443 22233344444444443
No 267
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=92.91 E-value=0.19 Score=53.26 Aligned_cols=100 Identities=13% Similarity=0.163 Sum_probs=60.7
Q ss_pred HHhhcCceEEEEEc-ceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEe-cCeeeeceEEcCCCEEC
Q 010874 339 AAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI-DNCRIKDAIISHGCFLR 416 (498)
Q Consensus 339 ~~i~~~~I~~~~~~-~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~I~~s~Ig~~~~I~ 416 (498)
..+++..+...... +-++-+||-.+|++--..- +.+. +.. ..+...... .+..+ .++.|.+|+|..++.++
T Consensus 222 ~~Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~----~~l~-~~~-~~~~~~~~~-~~~~~~~~~~VinSil~~~~~vg 294 (414)
T PF07959_consen 222 KLLRGTPLNVVPLPNGKFYHFGTSREYLEHLTSD----SELG-IMR-RKFSHSPAT-TPSDSEASSCVINSILEGGVSVG 294 (414)
T ss_pred HHhhhccccccccCCceEEEecCCHHHHHhhccC----cccc-cce-eeeeccccc-cccccCCCeeEEEeEecCCceEC
Confidence 33455566655554 6678899988665432221 1110 000 001111111 11122 24667789999999999
Q ss_pred -ceEEeccEECCCCEECCCCEEcceEEeCC
Q 010874 417 -ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (498)
Q Consensus 417 -~~~v~~siIg~~~~Ig~~~~i~~svi~~~ 445 (498)
++.|+||.|+.+++||++|.|.++-+...
T Consensus 295 ~~svIe~s~l~~~~~IG~~cIisGv~~~~~ 324 (414)
T PF07959_consen 295 PGSVIEHSHLGGPWSIGSNCIISGVDINSW 324 (414)
T ss_pred CCCEEEeeecCCCCEECCCCEEECCccccc
Confidence 78899999999999999999998866554
No 268
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=91.70 E-value=3.1 Score=36.33 Aligned_cols=109 Identities=12% Similarity=0.152 Sum_probs=69.8
Q ss_pred ceecCCcchhHHHHHHHHHhc--CCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChH
Q 010874 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~s--Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta 196 (498)
.+|.-|....|..+|+.+.+. ...+|+|+-....+...+.+. .+... ...++++...+. .|.+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~-~~~~~-----~~~i~~i~~~~n---------~g~~ 67 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILE-EYAES-----DPNIRYIRNPEN---------LGFS 67 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHH-HHHCC-----STTEEEEEHCCC---------SHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccc-ccccc-----cccccccccccc---------cccc
Confidence 467777756889999988876 456777776554444444443 33221 123666654432 4788
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeEEEE
Q 010874 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 248 (498)
Q Consensus 197 ~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~tv~~ 248 (498)
.++..+..... .+.++++..|.+...+ +..+++.+.+.+.++.+..
T Consensus 68 ~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 68 AARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp HHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred ccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 88888876654 4799999999999887 6888888887676654443
No 269
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=81.51 E-value=21 Score=33.81 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=64.1
Q ss_pred ceecCCcchhHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccC
Q 010874 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sGi----~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~G 194 (498)
++|.-|..+.|..+++.+.+... -+|+|+-+...+...+.+. .+... . ..+.++.... .|
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~-~~~~~---~--~~v~~i~~~~----------~~ 68 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQ-EYAAK---D--PRIRLIDNPK----------RI 68 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHH-HHHhc---C--CeEEEEeCCC----------CC
Confidence 45666665678888898877644 3777776655555545553 22111 1 2255554221 25
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeE
Q 010874 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADIT 245 (498)
Q Consensus 195 ta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~t 245 (498)
-+.++..+.... ..+.++++.+|.+...+ +..+++.+.+.+.++.
T Consensus 69 ~~~a~N~g~~~a------~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v 114 (249)
T cd02525 69 QSAGLNIGIRNS------RGDIIIRVDAHAVYPKDYILELVEALKRTGADNV 114 (249)
T ss_pred chHHHHHHHHHh------CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEE
Confidence 566777665543 35889999999987766 6777776655555443
No 270
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=80.38 E-value=20 Score=32.20 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=63.8
Q ss_pred eecCCcchhHHHHHHHHHhc----CCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccCh
Q 010874 120 VPVAGCYRLIDIPMSNCINS----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (498)
Q Consensus 120 lpI~G~~pLId~~L~~l~~s----Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gt 195 (498)
+|..+....|..+|+.+.+. ...+|+|+-....+...+.+. .+.. ++. .+.++...+. .|-
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~-~~~~---~~~--~~~~~~~~~n---------~G~ 67 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIAR-ELAA---RVP--RVRVIRLSRN---------FGK 67 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHH-HHHH---hCC--CeEEEEccCC---------CCc
Confidence 45556545677788887775 356777776554444433332 2211 121 1344443332 478
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeEEE
Q 010874 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (498)
Q Consensus 196 a~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~tv~ 247 (498)
+.++..+..... .+.++++.+|.....+ +..+++...+.+.++.+.
T Consensus 68 ~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 68 GAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred cHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 888887765542 4889999999877666 677777655666655443
No 271
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=79.07 E-value=42 Score=29.14 Aligned_cols=98 Identities=7% Similarity=0.064 Sum_probs=62.2
Q ss_pred ceecCCcchhHHHHHHHHHhcC--CCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChH
Q 010874 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sG--i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta 196 (498)
++|.-|+..++..+++.+.+.- ..+|+|+.....+...+.+.+.+ . .+.++..... .|.+
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~-~--------~~~~~~~~~~---------~g~~ 63 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF-P--------EVRLIRNGEN---------LGFG 63 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC-C--------CeEEEecCCC---------cChH
Confidence 3566676578999999998753 45777776655444444453211 1 2444432221 5888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHc
Q 010874 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDR 240 (498)
Q Consensus 197 ~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~ 240 (498)
.++..+.... ..+.++++..|..+..+ +..+++...+.
T Consensus 64 ~a~n~~~~~~------~~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 64 AGNNQGIREA------KGDYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred HHhhHHHhhC------CCCEEEEECCCcEECccHHHHHHHHHHhC
Confidence 8888877554 35789999999988766 56666655443
No 272
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=78.12 E-value=40 Score=32.11 Aligned_cols=98 Identities=15% Similarity=0.133 Sum_probs=59.1
Q ss_pred cceecCCcchhHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCcccc
Q 010874 118 PAVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (498)
Q Consensus 118 ~LlpI~G~~pLId~~L~~l~~sGi----~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~ 193 (498)
.++|..|....|...|+.+.+... -+|+|+.....+...+.+. .+.. . .+.++..... .
T Consensus 33 Vvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~---~----~v~~i~~~~~---------~ 95 (251)
T cd06439 33 IIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAR-EYAD---K----GVKLLRFPER---------R 95 (251)
T ss_pred EEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHH-HHhh---C----cEEEEEcCCC---------C
Confidence 556666664567777777766432 2577776554444433332 3211 0 2455543221 4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHH
Q 010874 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 238 (498)
Q Consensus 194 Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~ 238 (498)
|-+.++..+..... .+.++++.+|.+...+ +..+++...
T Consensus 96 g~~~a~n~gi~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 96 GKAAALNRALALAT------GEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred ChHHHHHHHHHHcC------CCEEEEEccccCcCHHHHHHHHHHhc
Confidence 77888887765542 4889999999988766 566666653
No 273
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=76.77 E-value=41 Score=31.63 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=62.4
Q ss_pred ceecCCcc-hhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChHH
Q 010874 119 AVPVAGCY-RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTAD 197 (498)
Q Consensus 119 LlpI~G~~-pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~ 197 (498)
++|.-|.. ..|..+|+.+.+....+|+|+.....+...+.+.+.. .. ..+.++.... .|-+.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~-----~~--~~~~v~~~~~----------~g~~~ 67 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTV-----KY--GGIFVITVPH----------PGKRR 67 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhc-----cC--CcEEEEecCC----------CChHH
Confidence 45666665 6889999998876567888887766665555553211 11 1244443221 37777
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHH
Q 010874 198 AVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 238 (498)
Q Consensus 198 Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~ 238 (498)
++..++... ..+.++++.+|.....+ +..+++...
T Consensus 68 a~n~g~~~a------~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 68 ALAEGIRHV------TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHh------CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 777665443 35889999999999877 566665554
No 274
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=75.14 E-value=3.3 Score=44.00 Aligned_cols=127 Identities=24% Similarity=0.345 Sum_probs=70.2
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcc--hhHHHHHHHHHhc----------CCC-eEEEEec-cCchhHHHH
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCY--RLIDIPMSNCINS----------GIN-KIFVLTQ-FNSASLNRH 158 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~--pLId~~L~~l~~s----------Gi~-~I~Vv~~-~~~~~l~~h 158 (498)
.++.++++|||.||||. ..-||.+.|+|-.+ .|+++..+.+... |.+ .-+|.|. .-.+.-.+|
T Consensus 96 ~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~ 172 (477)
T KOG2388|consen 96 GKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEY 172 (477)
T ss_pred CcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhH
Confidence 56889999999999998 56899999998430 4888777665431 211 2355565 445556667
Q ss_pred HHh-hccCCCC---c-CCCCeEEEecccCCCCCCCC-------ccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee
Q 010874 159 IAR-TYFGNGT---N-FGDGFVEVLAATQTPGESGK-------NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL 225 (498)
Q Consensus 159 l~~-~~~~~~~---~-~~~~~V~v~~~~q~~~~~~~-------~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l 225 (498)
+.. .||+... . |..+.+..+ +..+.-.. .-+.|.++..+.+...+++........+-+.+-|.+
T Consensus 173 f~~~~~FGl~~~qv~~f~Q~~l~c~---~~~gk~~le~k~~~a~ap~gngg~y~ai~~~l~dm~~rgi~~~hiy~Vdnv 248 (477)
T KOG2388|consen 173 FESHKYFGLKPEQVTFFQQGKLPCL---DLDGKFILEQKNSLAAAPDGNGGLYRAIKDQLEDMAARGIFYDHIYCVDNV 248 (477)
T ss_pred HhhcCCCCCChhHeeeeeccccccc---ccCCceeccCccchhcCCCCCcHHHHHHHhhhhHHHhhcccEEEEEEecce
Confidence 754 3455321 0 111111111 00000000 013577777777766666544444455555566653
No 275
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=74.24 E-value=4.7 Score=47.05 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=37.2
Q ss_pred eEEeccEECCCCEECCC-CEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeE-ECCCCEECCCcEE
Q 010874 418 CTVEHSIVGERSRLDYG-VELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCI-IDKNVKIGKDVVI 490 (498)
Q Consensus 418 ~~v~~siIg~~~~Ig~~-~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~i-I~~~~~Ig~~~~i 490 (498)
+.|.||+|..++.++++ +.|++|.+.++ +.||+++.|.++- .+.+..|.+++.|
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~-------------------~~ig~~~Iisgv~~~~~~~~vP~~~ci 387 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEG-------------------WKLASRSIITGVPENSWNLDLPEGVCI 387 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCC-------------------eEEcCCcEEecccccccceecCCCcEE
Confidence 45677888888888877 44777777777 7778777777664 4445566666554
No 276
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=73.14 E-value=51 Score=30.61 Aligned_cols=107 Identities=10% Similarity=0.078 Sum_probs=61.9
Q ss_pred ceecCCcchhHHHHHHHHHhcC---CCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccCh
Q 010874 119 AVPVAGCYRLIDIPMSNCINSG---INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sG---i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gt 195 (498)
.+|.-+....|..+|+.+.+.- --+|+||-....+...+.+. .+... . ..+.++..... .|-
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~-~~~~~---~--~~i~~~~~~~n---------~G~ 66 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVR-ELAKE---Y--PRVRLIVRPGK---------RGL 66 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHH-HHHHh---C--CceEEEecCCC---------CCh
Confidence 4566666456778888877642 34676665443333333332 22111 1 12445433222 588
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeEE
Q 010874 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (498)
Q Consensus 196 a~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~tv 246 (498)
+.|+..+..... .+.++++.+|.....+ +..+++...+.+.++..
T Consensus 67 ~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 67 GSAYIEGFKAAR------GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred HHHHHHHHHHcC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 888887765442 4788899999877665 56777765555555443
No 277
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=71.77 E-value=55 Score=28.13 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=60.0
Q ss_pred ceecCCcchhHHHHHHHHHhcC--CCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChH
Q 010874 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sG--i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta 196 (498)
.+|.-+....|..+|+.+.+.. ..+|+|+-....+...+.+. .+... .. ..+.++...+. .|.+
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~-~~~~~---~~-~~~~~~~~~~~---------~g~~ 67 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILE-ELAAL---YI-RRVLVVRDKEN---------GGKA 67 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHH-HHhcc---cc-ceEEEEEeccc---------CCch
Confidence 4566676568888999988864 45777776554444434443 22111 00 11333332222 4788
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHH
Q 010874 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (498)
Q Consensus 197 ~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~ 239 (498)
.++..+.... ..+.++++.+|.+...+ +..++..+.+
T Consensus 68 ~~~n~~~~~~------~~~~i~~~D~D~~~~~~~l~~~~~~~~~ 105 (180)
T cd06423 68 GALNAGLRHA------KGDIVVVLDADTILEPDALKRLVVPFFA 105 (180)
T ss_pred HHHHHHHHhc------CCCEEEEECCCCCcChHHHHHHHHHhcc
Confidence 8888776554 35789999999988766 4555455544
No 278
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=70.07 E-value=58 Score=30.20 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=62.3
Q ss_pred ceecCCcchhHHHHHHHHHhc------CCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccc
Q 010874 119 AVPVAGCYRLIDIPMSNCINS------GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~s------Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~ 192 (498)
.+|.-|....|...|+.+.+. ..-+|+|+-+...+...+.+. .+.. +++. .+.++.....
T Consensus 2 iip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~-~~~~---~~~~-~i~~i~~~~n--------- 67 (211)
T cd04188 2 VIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVAR-KLAR---KNPA-LIRVLTLPKN--------- 67 (211)
T ss_pred EEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHH-HHHH---hCCC-cEEEEEcccC---------
Confidence 356666535666777776653 234676665443333323332 2211 1111 1344443222
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeEEE
Q 010874 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (498)
Q Consensus 193 ~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~tv~ 247 (498)
.|-+.|+..+..... .+.++++.+|..+..+ +..+++...+.+.++.+.
T Consensus 68 ~G~~~a~~~g~~~a~------gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 68 RGKGGAVRAGMLAAR------GDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred CCcHHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 588899988875543 4889999999987765 677777655556665443
No 279
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=69.80 E-value=69 Score=30.53 Aligned_cols=109 Identities=12% Similarity=-0.009 Sum_probs=62.1
Q ss_pred ceecCCcchhHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccC
Q 010874 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sGi----~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~G 194 (498)
++|.-|..-.|..+|+.+.+.-. -+|+||.....+.-.+.+ +.+ ..... ..+.++.... ..|
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~-~~~-~~~~~---~~i~~~~~~~---------~~G 71 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAA-RAL-RLPSI---FRVVVVPPSQ---------PRT 71 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHH-HHh-ccCCC---eeEEEecCCC---------CCc
Confidence 45666664577888888877532 256666554333333333 232 11001 1133332211 147
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeEEE
Q 010874 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (498)
Q Consensus 195 ta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~tv~ 247 (498)
-+.|+..+.... ..+.++++.+|.....+ +..+++...+.+.++.++
T Consensus 72 ~~~a~n~g~~~a------~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 72 KPKACNYALAFA------RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred hHHHHHHHHHhc------CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 888888876543 35889999999988777 567777765544555444
No 280
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.58 E-value=64 Score=28.94 Aligned_cols=97 Identities=9% Similarity=0.102 Sum_probs=57.4
Q ss_pred ceecCCcchhHHHHHHHHHhcCCC--eEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChH
Q 010874 119 AVPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sGi~--~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta 196 (498)
.+|.-+....|..+|+.+.+.... +|+|+-+...+...+.+. .+.. ..+.+.. .+. .|-+
T Consensus 3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~-~~~~-------~~~~~~~-~~~---------~g~~ 64 (202)
T cd06433 3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIK-KYED-------KITYWIS-EPD---------KGIY 64 (202)
T ss_pred EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHH-HhHh-------hcEEEEe-cCC---------cCHH
Confidence 356666646888999998876554 566664433344444443 2211 1123332 111 4788
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHH
Q 010874 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (498)
Q Consensus 197 ~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~ 239 (498)
.++..++... ..+.++++.+|.....+ +..++....+
T Consensus 65 ~a~n~~~~~a------~~~~v~~ld~D~~~~~~~~~~~~~~~~~ 102 (202)
T cd06433 65 DAMNKGIALA------TGDIIGFLNSDDTLLPGALLAVVAAFAE 102 (202)
T ss_pred HHHHHHHHHc------CCCEEEEeCCCcccCchHHHHHHHHHHh
Confidence 8888876544 24789999999977655 6777744433
No 281
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=68.39 E-value=85 Score=28.56 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=58.4
Q ss_pred ceecCCcc--hhHHHHHHHHHhcC--CCeEEEEeccC-chhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCcccc
Q 010874 119 AVPVAGCY--RLIDIPMSNCINSG--INKIFVLTQFN-SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (498)
Q Consensus 119 LlpI~G~~--pLId~~L~~l~~sG--i~~I~Vv~~~~-~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~ 193 (498)
++|+.+.. ..|..+|+.+.+.- -.+|+|+-... .+...+.+ +.|.. ++. +.++...+. .
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~-~~~~~---~~~---i~~i~~~~n---------~ 66 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVL-EEFKR---KLP---LKVVPLEKN---------R 66 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHH-HHHHh---cCC---eEEEEcCcc---------c
Confidence 46777652 27889999998753 35666664433 23333323 23311 111 455543222 4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHH
Q 010874 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (498)
Q Consensus 194 Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~ 239 (498)
|.+.|...+.... ..+.++++.+|.+...+ +..+++...+
T Consensus 67 G~~~a~N~g~~~a------~gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 67 GLGKALNEGLKHC------TYDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred cHHHHHHHHHHhc------CCCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 8888887776543 35789999999988766 5666665433
No 282
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=68.22 E-value=75 Score=31.53 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=62.7
Q ss_pred ceecCCcc-hhHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCcccc
Q 010874 119 AVPVAGCY-RLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (498)
Q Consensus 119 LlpI~G~~-pLId~~L~~l~~sGi----~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~ 193 (498)
.+|.-|.. ..|..+|+.+.+.-- .+|+||-+...+...+.+.+.+... .. ..+.++...+. .
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~--~~--~~v~vi~~~~n---------~ 69 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKK--YL--PKVKVLRLKKR---------E 69 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhh--cC--CcEEEEEcCCC---------C
Confidence 35677774 588888888876421 3787776544333323332111000 11 23667654332 4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCC
Q 010874 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (498)
Q Consensus 194 Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~a 242 (498)
|-+.|...+.... ..+.++++.+|.....+ +..+++...+...
T Consensus 70 G~~~a~N~g~~~A------~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 70 GLIRARIAGARAA------TGDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CHHHHHHHHHHHc------cCCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 7888877776443 35889999999988766 6777777655443
No 283
>PRK10073 putative glycosyl transferase; Provisional
Probab=66.64 E-value=60 Score=33.13 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=63.0
Q ss_pred ceecCCcchhHHHHHHHHHhcCCC--eEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChH
Q 010874 119 AVPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sGi~--~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta 196 (498)
.+|+-|....|..+|+.+.+.-.. +|+|+-....+.-.+.+ +.|... . ..+.++.. .. .|.+
T Consensus 11 IIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~-~~~~~~---~--~~i~vi~~--~n--------~G~~ 74 (328)
T PRK10073 11 IIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIA-KHYAEN---Y--PHVRLLHQ--AN--------AGVS 74 (328)
T ss_pred EEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHH-HHHHhh---C--CCEEEEEC--CC--------CChH
Confidence 457766656889999999876433 56555432222221222 233111 1 23666542 21 4788
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeEE
Q 010874 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (498)
Q Consensus 197 ~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~tv 246 (498)
.|...++... ..+.++++.+|-+...+ +..+++...+.+.++.+
T Consensus 75 ~arN~gl~~a------~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 75 VARNTGLAVA------TGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHHHHHHHhC------CCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 8877666443 35889999999987766 56677766666677644
No 284
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=66.59 E-value=79 Score=28.72 Aligned_cols=98 Identities=12% Similarity=0.162 Sum_probs=55.8
Q ss_pred ceecCCcc-hhHHHHHHHHHhcCCC--eEEEEeccCch-hHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccC
Q 010874 119 AVPVAGCY-RLIDIPMSNCINSGIN--KIFVLTQFNSA-SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (498)
Q Consensus 119 LlpI~G~~-pLId~~L~~l~~sGi~--~I~Vv~~~~~~-~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~G 194 (498)
.+|.-+.. ..|..+|+.+.+.-.. +|+|+-....+ .+...+ +.+.... ..+.++..... .|
T Consensus 6 ii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~-~~~~~~~-----~~~~~~~~~~~---------~g 70 (202)
T cd04184 6 VMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVL-KKYAAQD-----PRIKVVFREEN---------GG 70 (202)
T ss_pred EEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHH-HHHHhcC-----CCEEEEEcccC---------CC
Confidence 35666664 5677888888765332 66666443322 232222 2221110 12444433221 47
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHH
Q 010874 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH 237 (498)
Q Consensus 195 ta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h 237 (498)
-+.++..+.... ..+.++++..|.....+ +..+++.+
T Consensus 71 ~~~a~n~g~~~a------~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 71 ISAATNSALELA------TGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHHHHHhh------cCCEEEEECCCCcCChHHHHHHHHHH
Confidence 788887776543 24789999999988776 57777766
No 285
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=63.75 E-value=68 Score=30.72 Aligned_cols=49 Identities=20% Similarity=0.099 Sum_probs=34.9
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeEEE
Q 010874 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (498)
Q Consensus 193 ~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~tv~ 247 (498)
.|-+.|+..+.... ..+.++++.+|...+.+ +..+++...+.++++...
T Consensus 79 ~G~~~a~n~g~~~a------~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHA------SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHc------CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 47888888776543 35789999999987665 577777766667765443
No 286
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=62.72 E-value=1.1e+02 Score=28.34 Aligned_cols=106 Identities=5% Similarity=0.046 Sum_probs=59.9
Q ss_pred ceecCCcchhHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccC
Q 010874 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sGi----~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~G 194 (498)
++|..|....|..+|+.+.+.-. -+|+|+-....+...+.+. +.. ......+.++..... . ..|
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~--~~~---~~~~~~v~~~~~~~~-~------~~g 69 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE--FAA---AKPNFQLKILNNSRV-S------ISG 69 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH--HHH---hCCCcceEEeeccCc-c------cch
Confidence 46777765678888888876422 3566665443333333332 100 011123555543321 1 146
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCC
Q 010874 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (498)
Q Consensus 195 ta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~a 242 (498)
-+.++..+.... ..+.++++.+|.+...+ +..+++.+.+.+.
T Consensus 70 ~~~a~n~g~~~~------~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 70 KKNALTTAIKAA------KGDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred hHHHHHHHHHHh------cCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 667776665433 35889999999988776 5677766654443
No 287
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=62.14 E-value=1.2e+02 Score=27.33 Aligned_cols=106 Identities=12% Similarity=0.077 Sum_probs=61.4
Q ss_pred ceecCCcchhHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccC
Q 010874 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sGi----~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~G 194 (498)
++|..|....|..+|+.+.+... -+|+|+.....+.-.+.+. .+ +. .+.+... .. -.|
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~-~~-------~~-~~~~~~~-~~--------~~g 63 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVAR-AA-------GA-TVLERHD-PE--------RRG 63 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHH-Hc-------CC-eEEEeCC-CC--------CCC
Confidence 46777765688888888876433 3677776554444333332 21 11 1222111 11 147
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCH-HHHHHHHHHcCCCe
Q 010874 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADI 244 (498)
Q Consensus 195 ta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl-~~ll~~h~~~~ad~ 244 (498)
-+.|+..+...... .....+.++++.+|.....++ ..+++.+. .+.++
T Consensus 64 k~~aln~g~~~a~~-~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~-~~~~~ 112 (183)
T cd06438 64 KGYALDFGFRHLLN-LADDPDAVVVFDADNLVDPNALEELNARFA-AGARV 112 (183)
T ss_pred HHHHHHHHHHHHHh-cCCCCCEEEEEcCCCCCChhHHHHHHHHHh-hCCCe
Confidence 88888887765420 012357899999999988774 66666554 34543
No 288
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=57.70 E-value=1e+02 Score=27.63 Aligned_cols=105 Identities=11% Similarity=-0.019 Sum_probs=57.4
Q ss_pred eecCCcchhHHHHHHHHHhc-----CCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccC
Q 010874 120 VPVAGCYRLIDIPMSNCINS-----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (498)
Q Consensus 120 lpI~G~~pLId~~L~~l~~s-----Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~G 194 (498)
+|.-+....|...++.+.+. ..-+|+|+-+...+...+.+ +.+.. .. ..+.++...+. .|
T Consensus 3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~-~~~~~---~~--~~i~~i~~~~n---------~G 67 (181)
T cd04187 3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEIL-RELAA---RD--PRVKVIRLSRN---------FG 67 (181)
T ss_pred EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHH-HHHHh---hC--CCEEEEEecCC---------CC
Confidence 45555533455555555431 22477777654444333333 22211 11 12555543332 48
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeEE
Q 010874 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (498)
Q Consensus 195 ta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~tv 246 (498)
.+.|+..+.... ..+.++++.+|.....+ +..+++. .+.+.++.+
T Consensus 68 ~~~a~n~g~~~a------~~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~ 113 (181)
T cd04187 68 QQAALLAGLDHA------RGDAVITMDADLQDPPELIPEMLAK-WEEGYDVVY 113 (181)
T ss_pred cHHHHHHHHHhc------CCCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEE
Confidence 888888776543 24889999999988765 5667666 444555433
No 289
>PRK10018 putative glycosyl transferase; Provisional
Probab=54.31 E-value=2.3e+02 Score=28.15 Aligned_cols=98 Identities=9% Similarity=0.144 Sum_probs=57.9
Q ss_pred ceecCCcchhHHHHHHHHHhcCCC--eEEEEeccCc--hhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccC
Q 010874 119 AVPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNS--ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sGi~--~I~Vv~~~~~--~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~G 194 (498)
.+|.-|....|..+|+.+.+.-.. +|+|+-..-. +.+.+++. .+ ....+.++...+. .|
T Consensus 10 Iip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~-~~-------~~~ri~~i~~~~n---------~G 72 (279)
T PRK10018 10 YMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVT-AL-------NDPRITYIHNDIN---------SG 72 (279)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHH-Hc-------CCCCEEEEECCCC---------CC
Confidence 346666656778888888775443 5555533211 22333332 21 1223666654332 48
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHH
Q 010874 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (498)
Q Consensus 195 ta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~ 239 (498)
.+.|...++... ..+.++++.+|.+...+ +..+++...+
T Consensus 73 ~~~a~N~gi~~a------~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 73 ACAVRNQAIMLA------QGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHHHHc------CCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 888887776443 35889999999988776 6666665433
No 290
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=51.39 E-value=27 Score=33.64 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=49.5
Q ss_pred eEEEEEeCCCC---CcccCCcc--CCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCc
Q 010874 95 VAAIILGGGAG---TKLFPLTL--RAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTN 169 (498)
Q Consensus 95 m~aVILAaG~G---tRL~PLT~--~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~ 169 (498)
|.+||.--..+ |||.|.-. +|..- -. -|+..+++.+.. ++ |+|++... .+. .+ .. ..
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~~~eR~~L-----a~-aMl~Dvl~al~~--v~-v~vVs~d~--~v~-----~~-a~-~~ 62 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLSPEEREAL-----AL-AMLRDVLAALRA--VD-VVVVSRDP--EVA-----AL-AR-AR 62 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS-HHHHHHH-----HH-HHHHHHHHHHHH---S-EEEEES----S-T-----TT-TT---
T ss_pred CeEEEEcCCCCccccccCccCCHHHHHHH-----HH-HHHHHHHHHHHh--cC-eEEeccch--hhh-----hh-hh-hc
Confidence 66777764443 78875311 11111 11 488889998876 66 77776532 111 11 00 02
Q ss_pred CCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHH
Q 010874 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSH 237 (498)
Q Consensus 170 ~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h 237 (498)
++ ++++.... .|.-.||.++.... ..+.++++++|+ +...|+..++...
T Consensus 63 ~g---~~vl~d~~----------~gLN~Al~~a~~~~------~~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 63 LG---AEVLPDPG----------RGLNAALNAALAAA------GDDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp -S---SEEEE-------------S-HHHHHHHHHH-H--------S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred cC---CeEecCCC----------CCHHHHHHHHHhcc------CCCceEEeecCCccCCHHHHHHHHhcc
Confidence 23 56665331 37888888883222 347899999999 5667788887664
No 291
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=50.47 E-value=29 Score=28.72 Aligned_cols=28 Identities=7% Similarity=0.160 Sum_probs=22.0
Q ss_pred EEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
+.|...+.+..-+-.+...|.+++.+.+
T Consensus 70 v~i~~~~~v~G~i~~~~l~v~~ga~i~G 97 (101)
T PF04519_consen 70 VEIYGTARVEGDITAGKLEVEGGASING 97 (101)
T ss_pred EEEeCCEEEEEEEEECEEEEeCCCEEEE
Confidence 6788888888777777788888887764
No 292
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=49.99 E-value=1.6e+02 Score=31.32 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=58.9
Q ss_pred cceecCCcchhHHHHHHHHHhcCC--CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccCh
Q 010874 118 PAVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (498)
Q Consensus 118 ~LlpI~G~~pLId~~L~~l~~sGi--~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gt 195 (498)
-++|..|...-|..+++.+.+..- -+|+|+.....+...+.+. ++.. ++ ..+.++...+. .|-
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~-~~~~---~~--~~v~vv~~~~n---------~Gk 143 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLD-ALLA---ED--PRLRVIHLAHN---------QGK 143 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHH-HHHH---hC--CCEEEEEeCCC---------CCH
Confidence 345555554567788888776432 3777776544433333332 1111 11 12555543222 478
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHH
Q 010874 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (498)
Q Consensus 196 a~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~ 239 (498)
+.|+..+.... ..|.++++.+|.+.+.| +..+++.+.+
T Consensus 144 a~AlN~gl~~a------~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 144 AIALRMGAAAA------RSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred HHHHHHHHHhC------CCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 88888776432 35899999999998877 5666665543
No 293
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=49.87 E-value=1.9e+02 Score=26.47 Aligned_cols=103 Identities=9% Similarity=0.027 Sum_probs=52.1
Q ss_pred ceecCCcchhHHHHHHHHHhcC--CCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChH
Q 010874 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sG--i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta 196 (498)
++|+.|..+-|...|+.+.+.- --+|+||.....+.-.+.+. .+.. ++....+.++......| ..+-+
T Consensus 6 iip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~-~~~~---~~~~~~~~~~~~~~~~g------~~~~~ 75 (196)
T cd02520 6 LKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVR-KLIA---KYPNVDARLLIGGEKVG------INPKV 75 (196)
T ss_pred EEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHH-HHHH---HCCCCcEEEEecCCcCC------CCHhH
Confidence 4566665456778888887642 24676666544332222221 1101 11111244544332211 01223
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHH
Q 010874 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH 237 (498)
Q Consensus 197 ~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h 237 (498)
.++..+.... ..+.++++.+|.....+ +..+++..
T Consensus 76 ~~~n~g~~~a------~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 76 NNLIKGYEEA------RYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHHHhC------CCCEEEEECCCceEChhHHHHHHHHh
Confidence 4444443322 35789999999988766 46666543
No 294
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=49.01 E-value=46 Score=29.98 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=11.6
Q ss_pred EEeCCCcEEeeeEECCCCEECCCcEE
Q 010874 465 IGVGRNTKIRNCIIDKNVKIGKDVVI 490 (498)
Q Consensus 465 v~Ig~~~~i~~~iI~~~~~Ig~~~~i 490 (498)
+.|...+.+..-|=++...|..|+++
T Consensus 91 Vei~~~g~v~GdI~~~~i~v~~Ga~f 116 (146)
T COG1664 91 VELYPGGRVIGDITTKEITVEEGAIF 116 (146)
T ss_pred EEEcCCcEEeeeecccEEEEccCCEE
Confidence 55665555543333333333333333
No 295
>PRK11204 N-glycosyltransferase; Provisional
Probab=47.64 E-value=2.1e+02 Score=29.88 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=56.5
Q ss_pred ecCCcchhHHHHHHHHHhcCC--CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChHHH
Q 010874 121 PVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADA 198 (498)
Q Consensus 121 pI~G~~pLId~~L~~l~~sGi--~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~A 198 (498)
|.-|....|..+++.+.+..- -+|+|+-....+...+.+. .+.. ++ ..+.++...+. .|-++|
T Consensus 61 p~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~-~~~~---~~--~~v~~i~~~~n---------~Gka~a 125 (420)
T PRK11204 61 PCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILD-RLAA---QI--PRLRVIHLAEN---------QGKANA 125 (420)
T ss_pred ecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHH-HHHH---hC--CcEEEEEcCCC---------CCHHHH
Confidence 334433567777887776432 3677665543333333332 1111 11 12555542222 478888
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHH
Q 010874 199 VRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (498)
Q Consensus 199 lr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~ 239 (498)
+..+.... ..+.++++.+|.+...| +..+++...+
T Consensus 126 ln~g~~~a------~~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 126 LNTGAAAA------RSEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred HHHHHHHc------CCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 88876543 35889999999988777 5677766643
No 296
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.46 E-value=2.2e+02 Score=25.84 Aligned_cols=100 Identities=9% Similarity=0.013 Sum_probs=57.1
Q ss_pred eecCCcchhHHHHHHHHHhcCC--CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChHH
Q 010874 120 VPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTAD 197 (498)
Q Consensus 120 lpI~G~~pLId~~L~~l~~sGi--~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~ 197 (498)
+|.-|....|..+|+.+.+.-. .+|+|+-+...+...+.+. .+.. .+. +.++..... .|.+.
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~-~~~~---~~~---i~~~~~~~n---------~g~~~ 66 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLT-SLGD---LDN---IVYLRLPEN---------LGGAG 66 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHH-HhcC---CCc---eEEEECccc---------cchhh
Confidence 4555554678888999877532 4677765544444544443 2211 111 444443222 46677
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEcCceeeecCH-HHHHHHHH
Q 010874 198 AVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHV 238 (498)
Q Consensus 198 Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl-~~ll~~h~ 238 (498)
++..+..... ....+.++++..|.+...++ ..+++...
T Consensus 67 ~~n~~~~~a~---~~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 67 GFYEGVRRAY---ELGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred HHHHHHHHHh---ccCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 7766654432 12357899999999888774 55555443
No 297
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=46.80 E-value=49 Score=30.93 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=53.2
Q ss_pred ceecCCcchhHHHHHHHHHhc--CCCeEEEEeccCchhH---HHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCcccc
Q 010874 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASL---NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~s--Gi~~I~Vv~~~~~~~l---~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~ 193 (498)
++|..|..+.|..+|+.+... .--+|+|+.....+.. .+.+...+ +...+.++......+ ..
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~-------~~~~v~vi~~~~~~g------~~ 72 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY-------PRVRVRVIRRPRNPG------PG 72 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT-------GG-GEEEEE----HH------HH
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc-------CCCceEEeecCCCCC------cc
Confidence 567777757888888888763 2246666665443332 23333222 212366665433210 12
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCC
Q 010874 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (498)
Q Consensus 194 Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~a 242 (498)
|.+.++..+....+ .+.++++..|.+...+ +..+++.+...+.
T Consensus 73 ~k~~a~n~~~~~~~------~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~ 116 (228)
T PF13641_consen 73 GKARALNEALAAAR------GDYILFLDDDTVLDPDWLERLLAAFADPGV 116 (228)
T ss_dssp HHHHHHHHHHHH---------SEEEEE-SSEEE-CHHHHHHHHHHHBSS-
T ss_pred hHHHHHHHHHHhcC------CCEEEEECCCcEECHHHHHHHHHHHHhCCC
Confidence 45667777765543 5899999999998777 5666666633333
No 298
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=46.41 E-value=2.4e+02 Score=26.06 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=59.2
Q ss_pred ceecCCcc-hhHHHHHHHHHhcCCC----eEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCcccc
Q 010874 119 AVPVAGCY-RLIDIPMSNCINSGIN----KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (498)
Q Consensus 119 LlpI~G~~-pLId~~L~~l~~sGi~----~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~ 193 (498)
.+|.-|.. .++...|+.+.+.... +|+|+-....+...+.+. .+.. ++ .+.++...... .
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~---~~---~~~~~~~~~~~--------~ 70 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAA-ELGV---EY---GYRYLTRPDNR--------H 70 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHH-Hhhc---cc---CceEEEeCCCC--------C
Confidence 45666652 3688889988875443 677776555555544443 3211 11 13333322211 1
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeEEE
Q 010874 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (498)
Q Consensus 194 Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~tv~ 247 (498)
+-+.++..+.... ..+.++++..|.+.+.+ +..+++...+ +..+.++
T Consensus 71 ~~~~~~n~~~~~a------~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~~v 118 (234)
T cd06421 71 AKAGNLNNALAHT------TGDFVAILDADHVPTPDFLRRTLGYFLD-DPKVALV 118 (234)
T ss_pred CcHHHHHHHHHhC------CCCEEEEEccccCcCccHHHHHHHHHhc-CCCeEEE
Confidence 3455666655433 35889999999988877 4555655433 3333333
No 299
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=45.16 E-value=2.2e+02 Score=25.86 Aligned_cols=98 Identities=7% Similarity=0.099 Sum_probs=55.6
Q ss_pred ceecCCcchhHHHHHHHHHhcCC--CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChH
Q 010874 119 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sGi--~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta 196 (498)
++|.-|....|..+|+.+.+... -+|+|+-..-.+...+.+ +.+.. +++ ..+.++...+. .|-+
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~-~~~~~---~~~-~~~~~~~~~~~---------~G~~ 68 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEII-KEYID---KDP-FIIILIRNGKN---------LGVA 68 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHH-HHHHh---cCC-ceEEEEeCCCC---------ccHH
Confidence 46777764678888988877533 356666543333322223 22211 111 12333332222 4777
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHH
Q 010874 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQS 236 (498)
Q Consensus 197 ~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~ 236 (498)
.++..+.... ..+.++++..|.++..+ +..+++.
T Consensus 69 ~~~n~g~~~~------~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 69 RNFESLLQAA------DGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHHHHHhC------CCCEEEEECCCcccChhHHHHHHHH
Confidence 7777664322 35889999999887766 6777766
No 300
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=43.12 E-value=2.1e+02 Score=25.26 Aligned_cols=100 Identities=10% Similarity=0.076 Sum_probs=54.5
Q ss_pred ceecCCcchhHHHHHHHHHhc--CCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChH
Q 010874 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~s--Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta 196 (498)
++|.-|....|..+|+.+.+. ...+|+|+-....+...+.+. .+.. .+....+.+....+. .|.+
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~-~~~~---~~~~~~~~~~~~~~~---------~~~~ 68 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIE-EFKS---QFPIPIKHVWQEDEG---------FRKA 68 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHH-HHHh---hcCCceEEEEcCCcc---------hhHH
Confidence 356666656788899998764 234777665544443333332 2211 111111223222111 2556
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHH
Q 010874 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH 237 (498)
Q Consensus 197 ~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h 237 (498)
.++..+.... ..+.++++..|.+...+ +..+++.+
T Consensus 69 ~~~n~g~~~a------~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 69 KIRNKAIAAA------KGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHHh------cCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 6666555443 35889999999988766 45555554
No 301
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=42.67 E-value=3.9e+02 Score=27.68 Aligned_cols=112 Identities=15% Similarity=0.213 Sum_probs=61.3
Q ss_pred ecCCcchhHHHHHHHHHhcCC---CeEEEEeccCch---hHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccC
Q 010874 121 PVAGCYRLIDIPMSNCINSGI---NKIFVLTQFNSA---SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (498)
Q Consensus 121 pI~G~~pLId~~L~~l~~sGi---~~I~Vv~~~~~~---~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~G 194 (498)
|..|....|..+|+.+.+... -+|+|+-+...+ ++.+.+.+.+ . ....+.++.....+ ..| .|
T Consensus 47 pa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~-~-----~~~~i~vi~~~~~~----~g~-~G 115 (384)
T TIGR03469 47 PARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAY-G-----RGDRLTVVSGQPLP----PGW-SG 115 (384)
T ss_pred ecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhc-C-----CCCcEEEecCCCCC----CCC-cc
Confidence 444444677788888876533 367777654333 2333332221 0 00135666432211 112 46
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCe
Q 010874 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADI 244 (498)
Q Consensus 195 ta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~ 244 (498)
-+.|+.++.....+. ....+.++++.+|.....+ +..+++...+.+.++
T Consensus 116 k~~A~n~g~~~A~~~-~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 116 KLWAVSQGIAAARTL-APPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred hHHHHHHHHHHHhcc-CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 667777776543210 0115789999999988766 577887776666554
No 302
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=42.03 E-value=2.3e+02 Score=26.50 Aligned_cols=102 Identities=12% Similarity=0.099 Sum_probs=56.7
Q ss_pred ceecCCcch-hHHHHHHHHHhcCC--CeEEEEeccCch-hHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccC
Q 010874 119 AVPVAGCYR-LIDIPMSNCINSGI--NKIFVLTQFNSA-SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (498)
Q Consensus 119 LlpI~G~~p-LId~~L~~l~~sGi--~~I~Vv~~~~~~-~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~G 194 (498)
++|.-|..+ +|...|+.+.+... -+|+|+-+...+ ...+.+. .+.. +++ ..+.++...+. .|
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~-~~~~---~~~-~~i~~i~~~~~---------~G 68 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVE-AHCA---QLG-ERFRFFHVEPL---------PG 68 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHH-HHHH---HhC-CcEEEEEcCCC---------CC
Confidence 467777643 78899999887643 367666543332 2211121 1100 011 12444433322 24
Q ss_pred -hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHH
Q 010874 195 -TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 238 (498)
Q Consensus 195 -ta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~ 238 (498)
-++|+..+..... ...+.++++..|.+...+ +..++....
T Consensus 69 ~~~~a~n~g~~~a~----~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 69 AKAGALNYALERTA----PDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred CchHHHHHHHHhcC----CCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 3677777765432 124789999999988776 567766553
No 303
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=41.82 E-value=3.4e+02 Score=26.41 Aligned_cols=90 Identities=12% Similarity=0.027 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcCCCeEEEEeccC--chhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHH
Q 010874 128 LIDIPMSNCINSGINKIFVLTQFN--SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205 (498)
Q Consensus 128 LId~~L~~l~~sGi~~I~Vv~~~~--~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~ 205 (498)
.|...|+.+.+. ..+|+||=+.- .+.+.+.+. . + ..+.++..... .|-|.|...+...
T Consensus 9 ~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~-~-------~--~~i~~i~~~~N---------~G~a~a~N~Gi~~ 68 (281)
T TIGR01556 9 HLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARL-R-------G--QKIALIHLGDN---------QGIAGAQNQGLDA 68 (281)
T ss_pred HHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhc-c-------C--CCeEEEECCCC---------cchHHHHHHHHHH
Confidence 566777777654 46776665431 223332221 1 1 23667654332 5889999888765
Q ss_pred HHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHc
Q 010874 206 FEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDR 240 (498)
Q Consensus 206 i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~ 240 (498)
.. ....+.++++..|.+...+ +..+++...+.
T Consensus 69 a~---~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 69 SF---RRGVQGVLLLDQDSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred HH---HCCCCEEEEECCCCCCCHHHHHHHHHHHHhc
Confidence 43 1245889999999988766 46666655443
No 304
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=41.04 E-value=3.1e+02 Score=25.86 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=56.2
Q ss_pred ceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChHHH
Q 010874 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADA 198 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~A 198 (498)
++|.-|....|..+|+.+... ..+|+|+-+.-.+...+-+ +. ++ +.++.. . ..|-+.+
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~-~~-------~~---~~v~~~-~---------~~g~~~~ 62 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIA-KE-------YG---AKVYQR-W---------WDGFGAQ 62 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHH-HH-------cC---CEEEEC-C---------CCChHHH
Confidence 456666646778888887653 3688887665444333323 22 22 334432 1 1477777
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcC
Q 010874 199 VRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRD 241 (498)
Q Consensus 199 lr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ 241 (498)
...++... ..+.++++.+|.+...++.+.+....+.+
T Consensus 63 ~n~~~~~a------~~d~vl~lDaD~~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 63 RNFALELA------TNDWVLSLDADERLTPELADEILALLATD 99 (229)
T ss_pred HHHHHHhC------CCCEEEEEeCCcCcCHHHHHHHHHHHhCC
Confidence 77666443 24789999999988777544444443433
No 305
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=37.87 E-value=3.6e+02 Score=25.59 Aligned_cols=100 Identities=14% Similarity=0.172 Sum_probs=59.0
Q ss_pred hhHHHHHHHH-HhcCCC-eEEEEeccC----chhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChHHHHH
Q 010874 127 RLIDIPMSNC-INSGIN-KIFVLTQFN----SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVR 200 (498)
Q Consensus 127 pLId~~L~~l-~~sGi~-~I~Vv~~~~----~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr 200 (498)
|++-|.+... .+.|.+ +|+|+ ... .....+.|++.| +...|-+.+-... +|.+.|..
T Consensus 19 pi~~~li~~~~~e~~~~~eiIiv-DD~SpDGt~~~a~~L~k~y-------g~d~i~l~pR~~k---------lGLgtAy~ 81 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIV-DDASPDGTQEVAKALQKIY-------GEDNILLKPRTKK---------LGLGTAYI 81 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEE-eCCCCCccHHHHHHHHHHh-------CCCcEEEEeccCc---------ccchHHHH
Confidence 4555555554 346765 45444 333 235666665444 2233555543222 68888888
Q ss_pred HHHHHHHhhhcCCCCeEEEEcCceeeec-CHHHHHHHHHHcCCCeEEEEE
Q 010874 201 QFTWVFEDAKNRNIENVAILCGDHLYRM-DYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 201 ~~~~~i~~~~~~~~e~~Lvl~GD~l~~~-dl~~ll~~h~~~~ad~tv~~~ 249 (498)
..+.+.+ .+.++++.+|.=-.. -+.+|++...+.+.|++....
T Consensus 82 hgl~~a~------g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTR 125 (238)
T KOG2978|consen 82 HGLKHAT------GDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTR 125 (238)
T ss_pred hhhhhcc------CCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeee
Confidence 8765543 466777888875543 367888877777778776543
No 306
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=37.87 E-value=3.1e+02 Score=32.05 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=60.5
Q ss_pred cceecCCcch--hHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCcc
Q 010874 118 PAVPVAGCYR--LIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNW 191 (498)
Q Consensus 118 ~LlpI~G~~p--LId~~L~~l~~sGi----~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~ 191 (498)
-++|..|. + ++..++..+.+..- -+|+|+-....+...+... + ++ +.++......
T Consensus 264 ViIPtYNE-~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~-~-------~~---v~yI~R~~n~------- 324 (852)
T PRK11498 264 IFVPTYNE-DLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQ-E-------VG---VKYIARPTHE------- 324 (852)
T ss_pred EEEecCCC-cHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHH-H-------CC---cEEEEeCCCC-------
Confidence 35667776 4 56777777765322 1677776555555544432 2 22 4454322211
Q ss_pred ccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCH-HHHHHHHHHcCCCeEEEE
Q 010874 192 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADITISC 248 (498)
Q Consensus 192 ~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl-~~ll~~h~~~~ad~tv~~ 248 (498)
.|-++++..++... ..|.++++.+|++...|+ ..++..+.+ +.++.++.
T Consensus 325 -~gKAGnLN~aL~~a------~GEyIavlDAD~ip~pdfL~~~V~~f~~-dP~VglVQ 374 (852)
T PRK11498 325 -HAKAGNINNALKYA------KGEFVAIFDCDHVPTRSFLQMTMGWFLK-DKKLAMMQ 374 (852)
T ss_pred -cchHHHHHHHHHhC------CCCEEEEECCCCCCChHHHHHHHHHHHh-CCCeEEEE
Confidence 26688888876554 358999999999987774 555555443 33444443
No 307
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=37.64 E-value=3.2e+02 Score=24.97 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=53.9
Q ss_pred ceecCCcchhHHHHHHHHHhcC--CCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChH
Q 010874 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sG--i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta 196 (498)
++|+-|..+.|...|+.+.+.- .-+|+|+-+...+...+.+.+ . .+.++.. . .|-+
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~--------~---~~~~~~~--~---------~g~~ 61 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS--------A---GVVVISS--P---------KGRA 61 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc--------C---CeEEEeC--C---------cCHH
Confidence 4677776567888888887643 246666644333333334431 1 1333322 1 3666
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCH-HHHHHHHHHc
Q 010874 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDR 240 (498)
Q Consensus 197 ~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl-~~ll~~h~~~ 240 (498)
.+...+.... ..+.++++..|.....+. ..++....+.
T Consensus 62 ~a~n~g~~~a------~~~~i~~~D~D~~~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 62 RQMNAGAAAA------RGDWLLFLHADTRLPPDWDAAIIETLRAD 100 (221)
T ss_pred HHHHHHHHhc------cCCEEEEEcCCCCCChhHHHHHHHHhhcC
Confidence 6766665443 258899999999887664 5544444333
No 308
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=37.51 E-value=2.6e+02 Score=28.49 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=32.6
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHH---HcCCCeEEE
Q 010874 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV---DRDADITIS 247 (498)
Q Consensus 193 ~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~---~~~ad~tv~ 247 (498)
.|-+.|++.+...- ..+.++++.+|...+.+ +..+++... +.+.++.+.
T Consensus 148 ~G~~~A~~~Gi~~a------~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~G 200 (333)
T PTZ00260 148 KGKGGAVRIGMLAS------RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFG 200 (333)
T ss_pred CChHHHHHHHHHHc------cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEe
Confidence 58999998876543 24789999999877654 566665543 345555444
No 309
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=36.34 E-value=2.4e+02 Score=29.19 Aligned_cols=101 Identities=10% Similarity=0.103 Sum_probs=54.4
Q ss_pred ceecCCcchhHHHHHHHHHhcCC--CeEEEEeccCch---hHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCcccc
Q 010874 119 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSA---SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sGi--~~I~Vv~~~~~~---~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~ 193 (498)
++|+.|..+.|...|+.+.+..- -+|+|+.....+ ++.+.+.+.+ ....++++...+..| ..
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~-------p~~~i~~v~~~~~~G------~~ 112 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADF-------PDADIDLVIDARRHG------PN 112 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhC-------CCCceEEEECCCCCC------CC
Confidence 55666665778888888876543 367665543332 2323332222 212355554333221 12
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCH-HHHHHHHH
Q 010874 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHV 238 (498)
Q Consensus 194 Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl-~~ll~~h~ 238 (498)
+-..++.++. +. ...|.++++.+|.....|+ ..++....
T Consensus 113 ~K~~~l~~~~---~~---a~ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 113 RKVSNLINML---PH---ARHDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred hHHHHHHHHH---Hh---ccCCEEEEECCCCCcChhHHHHHHHHhc
Confidence 3334444432 22 1358899999999888774 66655553
No 310
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=35.75 E-value=4.6e+02 Score=27.80 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=56.0
Q ss_pred eecCCcchhHHHHHHHHHhcCC--C--eEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccCh
Q 010874 120 VPVAGCYRLIDIPMSNCINSGI--N--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (498)
Q Consensus 120 lpI~G~~pLId~~L~~l~~sGi--~--~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gt 195 (498)
+|.-|....|..+++.+.+... + +|+|+-+...+.-.+.+. .+.. .+. .+.+...... .|-
T Consensus 55 IP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~-~~~~---~~~--~v~v~~~~~~---------~Gk 119 (439)
T TIGR03111 55 IPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFC-RAQN---EFP--GLSLRYMNSD---------QGK 119 (439)
T ss_pred EEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHH-HHHH---hCC--CeEEEEeCCC---------CCH
Confidence 3445544677888888876543 2 466664433333322222 1100 111 1333322221 488
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHH
Q 010874 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (498)
Q Consensus 196 a~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~ 239 (498)
+.|+..+.... ..+.++++.+|.+.+.| +..+++...+
T Consensus 120 a~AlN~gl~~s------~g~~v~~~DaD~~~~~d~L~~l~~~f~~ 158 (439)
T TIGR03111 120 AKALNAAIYNS------IGKYIIHIDSDGKLHKDAIKNMVTRFEN 158 (439)
T ss_pred HHHHHHHHHHc------cCCEEEEECCCCCcChHHHHHHHHHHHh
Confidence 89998887543 35789999999988777 5777766643
No 311
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=34.91 E-value=53 Score=28.27 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.3
Q ss_pred CcchhHHHHHHHHHhcCCCeEEEE
Q 010874 124 GCYRLIDIPMSNCINSGINKIFVL 147 (498)
Q Consensus 124 G~~pLId~~L~~l~~sGi~~I~Vv 147 (498)
+. |-|+..++.|.+.|+++|+|+
T Consensus 44 ~~-P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NE-PTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEE
Confidence 55 899999999999999998876
No 312
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=30.22 E-value=4.5e+02 Score=24.36 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=52.9
Q ss_pred eecCCcc-hhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChHHH
Q 010874 120 VPVAGCY-RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADA 198 (498)
Q Consensus 120 lpI~G~~-pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~A 198 (498)
+|.-+.. ..|..+|+.+.+. ..+|+|+=+ .++.-..... .+ ....+.++..... .|-+.|
T Consensus 3 I~~yn~~~~~l~~~l~sl~~q-~~~iivvDn-~s~~~~~~~~-~~-------~~~~i~~i~~~~n---------~G~~~a 63 (237)
T cd02526 3 VVTYNPDLSKLKELLAALAEQ-VDKVVVVDN-SSGNDIELRL-RL-------NSEKIELIHLGEN---------LGIAKA 63 (237)
T ss_pred EEEecCCHHHHHHHHHHHhcc-CCEEEEEeC-CCCccHHHHh-hc-------cCCcEEEEECCCc---------eehHHh
Confidence 4444443 5777888887776 556666543 3322111111 11 1123556543332 477888
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHH
Q 010874 199 VRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFI 234 (498)
Q Consensus 199 lr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll 234 (498)
...+..... +...+.++++.+|.....+ +..++
T Consensus 64 ~N~g~~~a~---~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 64 LNIGIKAAL---ENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hhHHHHHHH---hCCCCEEEEECCCCCcCHhHHHHHH
Confidence 877765543 2234889999999988766 45553
No 313
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=26.62 E-value=4.5e+02 Score=27.27 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=66.8
Q ss_pred cceecCCcch-hHHHHHHHHHhcCCC--eEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccC
Q 010874 118 PAVPVAGCYR-LIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (498)
Q Consensus 118 ~LlpI~G~~p-LId~~L~~l~~sGi~--~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~G 194 (498)
-++|.-|..+ .++.+++++.+.... +|+++.....+...+.+.+.. . +++ ..+.++...+. ..|
T Consensus 58 viiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~-~---~~~-~~~~~~~~~~~--------~~g 124 (439)
T COG1215 58 VIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELG-A---EYG-PNFRVIYPEKK--------NGG 124 (439)
T ss_pred EEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHH-h---hcC-cceEEEecccc--------Ccc
Confidence 4566667667 899999999987644 788887766666655554321 1 121 12333321011 147
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcC
Q 010874 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRD 241 (498)
Q Consensus 195 ta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ 241 (498)
-+.|+..+.... ..+-++++-+|++...| +.+++....+.+
T Consensus 125 K~~al~~~l~~~------~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~ 166 (439)
T COG1215 125 KAGALNNGLKRA------KGDVVVILDADTVPEPDALRELVSPFEDPP 166 (439)
T ss_pred chHHHHHHHhhc------CCCEEEEEcCCCCCChhHHHHHHhhhcCCC
Confidence 788888876543 25789999999988777 677777765443
No 314
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=25.48 E-value=51 Score=27.20 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=16.2
Q ss_pred EeccEECC-CCEECCCCEEcceEEeCC
Q 010874 420 VEHSIVGE-RSRLDYGVELKDTVMLGA 445 (498)
Q Consensus 420 v~~siIg~-~~~Ig~~~~i~~svi~~~ 445 (498)
++..+.-. ...|+.++.|++.+-.+.
T Consensus 27 v~G~i~~~g~v~i~~~~~v~G~i~~~~ 53 (101)
T PF04519_consen 27 VEGNIKAEGKVKIGGNGEVKGDIKADD 53 (101)
T ss_pred EEEEEEEceEEEEcCCCEEEEEEEEeE
Confidence 54444444 577777777777766554
No 315
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=25.29 E-value=6.8e+02 Score=24.84 Aligned_cols=103 Identities=9% Similarity=0.031 Sum_probs=59.3
Q ss_pred cCCcchhHHHHHHHHHhcCCCeEEE--EeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChHHHH
Q 010874 122 VAGCYRLIDIPMSNCINSGINKIFV--LTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAV 199 (498)
Q Consensus 122 I~G~~pLId~~L~~l~~sGi~~I~V--v~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Al 199 (498)
.... ..+...+..+.+.......+ +-+...+...+.+.... + ..|.++..... .|-|++.
T Consensus 12 yn~~-~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~------~--~~v~~i~~~~N---------lG~agg~ 73 (305)
T COG1216 12 YNRG-EDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF------F--PNVRLIENGEN---------LGFAGGF 73 (305)
T ss_pred cCCH-HHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc------C--CcEEEEEcCCC---------ccchhhh
Confidence 3444 67778888888765543333 33333333444443221 1 23666654433 4666666
Q ss_pred HHHHHHHHhhhcCCCC-eEEEEcCceeeecC-HHHHHHHHHHcCCCeEE
Q 010874 200 RQFTWVFEDAKNRNIE-NVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (498)
Q Consensus 200 r~~~~~i~~~~~~~~e-~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~tv 246 (498)
-.......+ ... .+++++-|++...+ +.++++.+.+.+..+.+
T Consensus 74 n~g~~~a~~----~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~ 118 (305)
T COG1216 74 NRGIKYALA----KGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVV 118 (305)
T ss_pred hHHHHHHhc----CCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEe
Confidence 554433221 123 69999999888766 68899988887665443
No 316
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=24.72 E-value=5.9e+02 Score=25.62 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=33.7
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-eecC-HHHHHHHHH-HcCCCeEEEE
Q 010874 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMD-YMDFIQSHV-DRDADITISC 248 (498)
Q Consensus 193 ~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l-~~~d-l~~ll~~h~-~~~ad~tv~~ 248 (498)
.|-+.|+..+.... ..+.++++.+|.. .+.+ +..+++... +.+.++...+
T Consensus 101 ~Gkg~A~~~g~~~a------~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 101 PGKGEALWRSLAAT------TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CCHHHHHHHHHHhc------CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 48888888775432 3478999999996 5554 677777665 3455555443
No 317
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=23.74 E-value=2.3e+02 Score=29.74 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=45.1
Q ss_pred HHHHHhcC-CCeEEEEeccCc--hhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhh
Q 010874 133 MSNCINSG-INKIFVLTQFNS--ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDA 209 (498)
Q Consensus 133 L~~l~~sG-i~~I~Vv~~~~~--~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~ 209 (498)
+..|.+.+ ++-++|+|+.+. +.+..++ +.+ +- .+.+-...+....|+. ..-|+.++......+++
T Consensus 23 i~~~~~~~~~~~~vi~TGQH~d~em~~~~l-e~~-~i--~~pdy~L~i~~~~~tl-------~~~t~~~i~~~~~vl~~- 90 (383)
T COG0381 23 VKALEKDPDFELIVIHTGQHRDYEMLDQVL-ELF-GI--RKPDYDLNIMKPGQTL-------GEITGNIIEGLSKVLEE- 90 (383)
T ss_pred HHHHHhCCCCceEEEEecccccHHHHHHHH-HHh-CC--CCCCcchhccccCCCH-------HHHHHHHHHHHHHHHHh-
Confidence 34566665 999999998776 4444444 333 11 1111113333222322 23566677766667764
Q ss_pred hcCCCCeEEEEcCceeee
Q 010874 210 KNRNIENVAILCGDHLYR 227 (498)
Q Consensus 210 ~~~~~e~~Lvl~GD~l~~ 227 (498)
..-|.+++.||+-..
T Consensus 91 ---~kPD~VlVhGDT~t~ 105 (383)
T COG0381 91 ---EKPDLVLVHGDTNTT 105 (383)
T ss_pred ---hCCCEEEEeCCcchH
Confidence 346799999998553
No 318
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=23.10 E-value=2.9e+02 Score=24.84 Aligned_cols=10 Identities=20% Similarity=0.209 Sum_probs=5.6
Q ss_pred EEeCCCcEEe
Q 010874 465 IGVGRNTKIR 474 (498)
Q Consensus 465 v~Ig~~~~i~ 474 (498)
+.|.+++.+.
T Consensus 108 i~v~~Ga~f~ 117 (146)
T COG1664 108 ITVEEGAIFE 117 (146)
T ss_pred EEEccCCEEE
Confidence 5566666553
No 319
>PRK10063 putative glycosyl transferase; Provisional
Probab=22.59 E-value=7e+02 Score=24.02 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=54.2
Q ss_pred eecCCcchhHHHHHHHHHh----cCC-CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccC
Q 010874 120 VPVAGCYRLIDIPMSNCIN----SGI-NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (498)
Q Consensus 120 lpI~G~~pLId~~L~~l~~----sGi-~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~G 194 (498)
+|.-|....|..+|+.+.+ .+. -+|+|+=+.-.+...+.+ +.+.. .. .+.++... . .|
T Consensus 7 i~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~-~~~~~---~~---~i~~i~~~-~---------~G 69 (248)
T PRK10063 7 TVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFL-ENLNG---IF---NLRFVSEP-D---------NG 69 (248)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHH-HHhcc---cC---CEEEEECC-C---------CC
Confidence 3444443577888888753 122 256555433333333334 23311 11 25555421 1 48
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHc
Q 010874 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240 (498)
Q Consensus 195 ta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~ 240 (498)
.++|+..++... ..+.++.+.+|-+...+..+++....+.
T Consensus 70 ~~~A~N~Gi~~a------~g~~v~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 70 IYDAMNKGIAMA------QGRFALFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred HHHHHHHHHHHc------CCCEEEEEeCCcccCcCHHHHHHHHHhC
Confidence 899998887554 2478889998887766755555544433
No 320
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=22.34 E-value=5.4e+02 Score=25.07 Aligned_cols=63 Identities=16% Similarity=0.292 Sum_probs=36.2
Q ss_pred CceEEEEEeCCCCCcccC---CccCC--CccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHH
Q 010874 93 KNVAAIILGGGAGTKLFP---LTLRA--ATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHI 159 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~P---LT~~~--PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl 159 (498)
..+.+|+.+.-.|+=... +.... .++-+|+-. -..-.++.|...|+++|.|++.|.. .+.+++
T Consensus 70 a~~dvi~~~cTsgs~~~G~~~~~~~i~~~~~g~p~tt---~~~A~~~AL~alg~~RIalvTPY~~-~v~~~~ 137 (239)
T TIGR02990 70 EELDVVAYSCTSASVVIGDDEVTRAINAAKPGTPVVT---PSSAAVDGLAALGVRRISLLTPYTP-ETSRPM 137 (239)
T ss_pred CCCCEEEEccchhheecCHHHHHHHHHhcCCCCCeeC---HHHHHHHHHHHcCCCEEEEECCCcH-HHHHHH
Confidence 345677777666654321 00000 112233332 2456677788889999999999964 355555
No 321
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=22.31 E-value=1.6e+02 Score=30.59 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=44.2
Q ss_pred CcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccC--chhHHHHHH
Q 010874 106 TKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFN--SASLNRHIA 160 (498)
Q Consensus 106 tRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~--~~~l~~hl~ 160 (498)
..+.||....+.-++.|-+++..+.+.|+.|.++ ||++..++.++. .+++++.+.
T Consensus 23 ~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~ 80 (356)
T PF05060_consen 23 DKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQ 80 (356)
T ss_pred hhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHH
Confidence 4456677777888899999967899999999885 999999999866 467777664
No 322
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=21.82 E-value=1.3e+02 Score=24.24 Aligned_cols=22 Identities=5% Similarity=0.218 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHhcCCCeEEEEe
Q 010874 127 RLIDIPMSNCINSGINKIFVLT 148 (498)
Q Consensus 127 pLId~~L~~l~~sGi~~I~Vv~ 148 (498)
|-++-.++.|...|+++|+++-
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvP 66 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVP 66 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEe
Confidence 6677777777666777766653
No 323
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=21.06 E-value=1.9e+02 Score=26.86 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=39.1
Q ss_pred ceeeeEEEEcHHHHHHHHHhhCCCC------Cchhh-----hhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 305 VASMGVYVFKKDVLFKLLRWRYPTS------NDFGS-----EIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 305 l~~~GIYif~~~vL~~ll~~~~~~~------~df~~-----dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
.+++-++++++.++..+.+...... ...+. .++.. ..+...+.....+...+|+|++||..|++.+-.
T Consensus 91 vvsaDLp~l~~~~i~~vi~~~~~~~~p~~~~~~~G~v~~Glni~~~-~~~~~~~~i~~~~la~NVNT~eDl~~a~~ll~~ 169 (177)
T COG2266 91 VVSADLPFLNPSIIDSVIDAAASVEVPIVTVVKAGRVPVGLNIVGG-KQEEEILEIDNPELAVNVNTPEDLKKAERLLRT 169 (177)
T ss_pred EEecccccCCHHHHHHHHHHHhhccCceeEeeccCccceeeEeecC-CCcceeEEeeccceeEecCCHHHHHHHHHHHhh
Confidence 4566778899999887766543100 00000 11111 112233333334677899999999999987753
No 324
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=20.91 E-value=6.6e+02 Score=23.07 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=56.5
Q ss_pred ceecCCcchhHHHHHHHHHhcCC---CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccCh
Q 010874 119 AVPVAGCYRLIDIPMSNCINSGI---NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sGi---~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gt 195 (498)
++|.-|....|..+|+.+.+.-. -+|+|+-....+...+-+ +.|.. ++....+.++...... .+..|-
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~-~~~~~---~~~~~~~~~~~~~~~~-----~~~~G~ 72 (219)
T cd06913 2 ILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEII-EKWRK---KLEDSGVIVLVGSHNS-----PSPKGV 72 (219)
T ss_pred EEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHH-HHHHH---hCcccCeEEEEecccC-----CCCccH
Confidence 35666654688888988877532 267666543333221122 22200 1111124433211110 011477
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcC
Q 010874 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRD 241 (498)
Q Consensus 196 a~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ 241 (498)
+.|...+.... ..+.++++.+|.+...+ +..+++...+..
T Consensus 73 ~~a~N~g~~~a------~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 73 GYAKNQAIAQS------SGRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred HHHHHHHHHhc------CCCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 77776654332 35889999999887665 566666655443
No 325
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=20.62 E-value=9e+02 Score=27.60 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCH-HHHHHHHHHcCCCeEEE
Q 010874 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADITIS 247 (498)
Q Consensus 194 Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl-~~ll~~h~~~~ad~tv~ 247 (498)
+-++++..++... ..+.++++.+|++...|. ..++....+ +.++.++
T Consensus 215 ~KAgnLN~al~~a------~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~V 262 (713)
T TIGR03030 215 AKAGNINNALKHT------DGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLV 262 (713)
T ss_pred CChHHHHHHHHhc------CCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEE
Confidence 4577887776443 358999999999988774 666665533 3334333
No 326
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=20.52 E-value=1.1e+02 Score=31.46 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=36.6
Q ss_pred CCCceEEEEEeCCCCCcccCCc-------c---CCCc-----cceecCCcchhHHHHHHHHHhcCCCeEEEEe
Q 010874 91 DPKNVAAIILGGGAGTKLFPLT-------L---RAAT-----PAVPVAGCYRLIDIPMSNCINSGINKIFVLT 148 (498)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT-------~---~~PK-----~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~ 148 (498)
||+.|.++||.| .|||..--. . .++. +++.+ .. |-|...++.|...|.++|+|+=
T Consensus 2 ~~~~~~aiLLvg-HGSRdp~~~~~~~~La~~l~~~~~~~V~~aFLE~-~e-Psl~eal~~l~~~G~~~IvVvP 71 (335)
T PRK05782 2 DRQSNTAIILIG-HGSRRETFNSDMEGMANYLKEKLGVPIYLTYNEF-AE-PNWRSLLNEIIKEGYRRVIIAL 71 (335)
T ss_pred CCCCCceEEEEe-cCCCChHHHHHHHHHHHHHHhccCCceEEEEecc-CC-CCHHHHHHHHHHCCCCEEEEec
Confidence 677788988876 888843110 0 1111 12222 44 8899999999999999987764
No 327
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.20 E-value=6.7e+02 Score=22.92 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=25.7
Q ss_pred CCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEE
Q 010874 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 213 ~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~ 248 (498)
..+.|++++|| .||..+++..++.|..+.+..
T Consensus 105 ~iD~~vLvSgD----~DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 105 NIDAVALVTRD----ADFLPVINKAKENGKETIVIG 136 (160)
T ss_pred CCCEEEEEecc----HhHHHHHHHHHHCCCEEEEEe
Confidence 45889999999 588999999999887655544
Done!