Query 010875
Match_columns 498
No_of_seqs 132 out of 181
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02910 polygalacturonate 4-a 100.0 4E-142 8E-147 1126.9 34.0 414 81-497 45-471 (657)
2 PLN02769 Probable galacturonos 100.0 8E-112 2E-116 898.4 29.6 295 194-497 153-448 (629)
3 PLN02829 Probable galacturonos 100.0 4E-112 1E-116 898.1 26.7 278 216-497 176-453 (639)
4 PLN02742 Probable galacturonos 100.0 6E-103 1E-107 819.4 22.7 279 215-497 66-349 (534)
5 PLN02867 Probable galacturonos 100.0 3.9E-87 8.5E-92 700.9 17.6 241 257-497 94-341 (535)
6 PLN02870 Probable galacturonos 100.0 1.7E-86 3.7E-91 694.9 18.7 239 250-497 91-339 (533)
7 PLN02718 Probable galacturonos 100.0 5.5E-85 1.2E-89 691.3 27.0 255 218-497 160-414 (603)
8 PLN02659 Probable galacturonos 100.0 8.6E-86 1.9E-90 689.7 17.5 224 267-497 107-340 (534)
9 PLN02523 galacturonosyltransfe 100.0 8.2E-78 1.8E-82 631.6 20.1 274 222-497 81-373 (559)
10 cd06429 GT8_like_1 GT8_like_1 99.9 2E-22 4.3E-27 196.4 5.5 110 372-497 1-110 (257)
11 cd00505 Glyco_transf_8 Members 95.1 0.024 5.2E-07 54.3 4.2 63 372-436 1-66 (246)
12 PF01501 Glyco_transf_8: Glyco 92.1 0.15 3.2E-06 46.8 3.5 42 380-421 10-51 (250)
13 cd06431 GT8_LARGE_C LARGE cata 91.5 0.15 3.3E-06 51.1 3.2 60 376-437 7-67 (280)
14 cd04194 GT8_A4GalT_like A4GalT 84.9 0.73 1.6E-05 43.9 2.8 59 373-435 2-65 (248)
15 PF10819 DUF2564: Protein of u 78.0 5.6 0.00012 34.4 5.3 69 252-321 6-78 (79)
16 PRK15171 lipopolysaccharide 1, 74.1 2.6 5.6E-05 43.4 2.9 47 369-416 23-71 (334)
17 TIGR02977 phageshock_pspA phag 67.1 15 0.00032 35.8 6.2 108 218-325 26-137 (219)
18 PF04012 PspA_IM30: PspA/IM30 60.2 24 0.00052 33.7 6.2 107 218-324 25-135 (221)
19 PRK10698 phage shock protein P 50.1 43 0.00092 33.1 6.2 106 218-323 26-135 (222)
20 PF09738 DUF2051: Double stran 47.5 3.6E+02 0.0078 28.3 13.5 104 163-266 7-129 (302)
21 COG4575 ElaB Uncharacterized c 46.8 71 0.0015 29.1 6.5 75 248-324 11-86 (104)
22 PRK10132 hypothetical protein; 42.2 99 0.0022 27.8 6.7 76 248-325 15-90 (108)
23 PF11464 Rbsn: Rabenosyn Rab b 36.0 78 0.0017 24.6 4.3 38 228-265 1-38 (42)
24 COG4565 CitB Response regulato 31.5 21 0.00045 36.1 0.8 151 179-352 4-168 (224)
25 PF15290 Syntaphilin: Golgi-lo 26.7 1E+02 0.0022 32.5 4.8 40 276-315 120-170 (305)
26 PF06785 UPF0242: Uncharacteri 23.2 4.2E+02 0.0091 29.0 8.5 105 226-332 109-225 (401)
27 COG1842 PspA Phage shock prote 22.6 8E+02 0.017 24.7 10.4 85 238-332 74-158 (225)
28 PRK10404 hypothetical protein; 22.4 3.4E+02 0.0074 24.1 6.6 79 244-324 4-83 (101)
29 KOG2391 Vacuolar sorting prote 21.2 2.3E+02 0.0051 30.7 6.2 52 281-332 226-277 (365)
30 PF10153 DUF2361: Uncharacteri 21.1 84 0.0018 28.7 2.7 38 253-294 1-42 (114)
31 cd08915 V_Alix_like Protein-in 20.5 8.9E+02 0.019 24.9 10.2 29 219-247 122-150 (342)
32 PF15466 DUF4635: Domain of un 20.1 4E+02 0.0086 25.2 6.7 81 229-319 29-116 (135)
No 1
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=100.00 E-value=3.6e-142 Score=1126.91 Aligned_cols=414 Identities=51% Similarity=0.854 Sum_probs=394.6
Q ss_pred HHHHHHHHhccCCCCceeeccccCCCCCcCcEEecccccccccCcCCCCcc-----------chhhhhcCCCCCCCCCcC
Q 010875 81 KDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSVENNATSEPNQK-----------AVRIEKEAPKGKGDNILA 149 (498)
Q Consensus 81 kevidvi~~~t~~~Gpl~l~~~r~~~ls~sw~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 149 (498)
.++|||++||++..|.++|..|++++||+||++++|..++++++....... .+...++ .+++.+++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~- 121 (657)
T PLN02910 45 EKDINIVATYSDTSGNIRLGRVKMKDLSASWVLENPADKVHDQPKGSQRLEDSSSFQNGTGEEDNVSHS--TTNQTDES- 121 (657)
T ss_pred ccchhhheeeecccccEEEEeeeeccccchhhhcCccccccCcccccccccchhhhccCcccccchhhh--hhhccccc-
Confidence 378999999999999999999999999999999999999998884332221 2333333 46777777
Q ss_pred CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhccCcCccccccccchhhcccCCCchhHHHH
Q 010875 150 DGHSQL--VDTPAKQFRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRL 227 (498)
Q Consensus 150 ~~~~~~--~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~e~~~~e~sk~~~~~~~g~y~iWr~e~~~~~~Ds~vr~ 227 (498)
+.+.++ +++|+||+||++|++||+.|++||++||+|++.++|++||+|||+||++++|||||||+||++.|+|++||+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~d~~~~g~y~~w~~e~~~~~~d~~vk~ 201 (657)
T PLN02910 122 GIQFPNKLPASPVKLQRQILRQERRDLRTAELIQQDKEADSQTQAAAIERSKSLDTSVKGKYSIWRRDYESPNSDSILKL 201 (657)
T ss_pred cccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhhhHHHhhhhhccCcccccceeeecccccccCcHHHHHH
Confidence 666666 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 010875 228 MRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLR 307 (498)
Q Consensus 228 lkDQli~AkaY~~IAk~~~n~~L~~EL~~~IrE~qr~LseA~~D~dLp~~a~~kik~M~~~l~kAK~~~yDc~~~~~KLR 307 (498)
|||||||||||++|||++||++|+|||++||||+||+||+|++|+|||+++.++|++|+++|++||+++|||+++++|||
T Consensus 202 lkDQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~dlp~~~~~k~~~M~~~l~~ak~~~~d~~~~~~KLr 281 (657)
T PLN02910 202 MRDQIIMAKAYANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGHVLSIAKDQLYDCHTMARKLR 281 (657)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhHhhhhccCCCcccccchhhhHHhhcCCCcCCCCCCCCCCCCCCcceEEEEecceeeeehh
Q 010875 308 AMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVV 387 (498)
Q Consensus 308 amL~~~Eeq~~~~kkQsafl~qLAA~tiPKsLHCLsMRLT~EYf~~~~~~~~~p~~ekLeDpsLyHYaIFSDNVLAASVV 387 (498)
+||+++||++++|++|++||+||||+|||||||||+||||+|||+++++++++|++++|+||+|||||||||||||||||
T Consensus 282 aml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy~ifSDNVLAaSVV 361 (657)
T PLN02910 282 AMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKDYVNKKKLEDPSLYHYAIFSDNVLATSVV 361 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhccCCChhhccCCcceeEEEEecceeeEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCCCeEEEEecCccchHHHHHHHhcCCCCCceEEEeeecccccccCCchhHHHhhhccchhhhhhccCCCC
Q 010875 388 VNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPT 467 (498)
Q Consensus 388 VNSTV~nAkeP~k~VFHVVTDk~Ny~AMk~WF~~Np~~~AtVeV~nIedF~WLnssy~pVLrqLes~~~~~yYf~~~~~~ 467 (498)
|||||+||++|+|||||||||++||+||+|||++|||++|||||+|||||+|||++|||||||||++++++|||++++++
T Consensus 362 VnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~nie~f~wln~~~~pvl~qles~~~~~~yf~~~~~~ 441 (657)
T PLN02910 362 VNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVENIDDFKWLNSSYCSVLRQLESARIKEYYFKANHPS 441 (657)
T ss_pred hhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEeehhhcccccccccHHHHHHhhhhhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcccCccccccCCCcchhhhhhcccccCCC
Q 010875 468 TLSSGASNLKYRNPKYLSMLNHLRFYLPQE 497 (498)
Q Consensus 468 ~~~~~~~~lK~rnPKYLSmLNHLRFYLPEi 497 (498)
+.+.+.+++|||||+|+|++||+||||||+
T Consensus 442 ~~~~~~~~~k~r~p~ylS~lnY~Rf~LPel 471 (657)
T PLN02910 442 SLSAGADNLKYRNPKYLSMLNHLRFYLPEV 471 (657)
T ss_pred cccccccccccCCcchhhHHHHHHHHHHHH
Confidence 777788999999999999999999999985
No 2
>PLN02769 Probable galacturonosyltransferase
Probab=100.00 E-value=8e-112 Score=898.44 Aligned_cols=295 Identities=36% Similarity=0.571 Sum_probs=284.6
Q ss_pred HHhhccCcCccccccccchhhcccCCCchhHHHHhHHHHHHHHhh-hhhhccCCCchHHHHHHHHHHHHHHHhcccccCc
Q 010875 194 AIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVY-LSIAKMKNKPDLQQELQSRLKESQRALGDTAADA 272 (498)
Q Consensus 194 ~~e~sk~~~~~~~g~y~iWr~e~~~~~~Ds~vr~lkDQli~AkaY-~~IAk~~~n~~L~~EL~~~IrE~qr~LseA~~D~ 272 (498)
+.|.+|+|+. ++|||||||+||++.|+|++||+||||||||||| ++|||++||++|+|||++||||+||+||||++|+
T Consensus 153 ~~e~~~~c~~-~~g~y~~w~~e~~~~~~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~ 231 (629)
T PLN02769 153 EDENEKSCEL-EFGSYCLWSEEHKEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDA 231 (629)
T ss_pred ccccccccee-eccceeeecccccccCcHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4467799987 8999999999999999999999999999999998 6999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhhccCCCcccccchhhhHHhhc
Q 010875 273 DLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYL 352 (498)
Q Consensus 273 dLp~~a~~kik~M~~~l~kAK~~~yDc~~~~~KLRamL~~~Eeq~~~~kkQsafl~qLAA~tiPKsLHCLsMRLT~EYf~ 352 (498)
|||+++.++|++|+++|++||+++|||.+|++||||||+++|||+++|++|++||+||||+|||||||||+||||+|||+
T Consensus 232 dlp~~~~~~~~~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~ 311 (629)
T PLN02769 232 DLPPFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFK 311 (629)
T ss_pred cCChhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCCCCCCCCcceEEEEecceeeeehhhhhhhhcccCCCCeEEEEecCccchHHHHHHHhcCCCCCceEEEe
Q 010875 353 LPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVE 432 (498)
Q Consensus 353 ~~~~~~~~p~~ekLeDpsLyHYaIFSDNVLAASVVVNSTV~nAkeP~k~VFHVVTDk~Ny~AMk~WF~~Np~~~AtVeV~ 432 (498)
++++++++|++|+|+||+||||||||||||||||||||||+||++|++||||||||++||+||+|||++||+++|||||+
T Consensus 312 ~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~ 391 (629)
T PLN02769 312 SSSLDMEDSNSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVL 391 (629)
T ss_pred CchhhccCCchhhccCCccceEEEEeccceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccCCchhHHHhhhccchhhhhhccCCCCCcccCccccccCCCcchhhhhhcccccCCC
Q 010875 433 NVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQE 497 (498)
Q Consensus 433 nIedF~WLnssy~pVLrqLes~~~~~yYf~~~~~~~~~~~~~~lK~rnPKYLSmLNHLRFYLPEi 497 (498)
|||+|+|.|. ++|+++||++.++..++|.++.. ...++++|+|+|++||+||||||+
T Consensus 392 n~e~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~eyiS~~nh~RfyIPEL 448 (629)
T PLN02769 392 NIEDLILKDL-DKFALKQLSLPEEFRVSFRSVDN-------PSSKQMRTEYLSVFSHSHFLLPEI 448 (629)
T ss_pred eeeeeeeccc-chHHHHhhccchhhhhhhccCCC-------CchhccCcccccHHHHHHHHHHHH
Confidence 9999999876 59999999999999888876532 346899999999999999999995
No 3
>PLN02829 Probable galacturonosyltransferase
Probab=100.00 E-value=4.4e-112 Score=898.06 Aligned_cols=278 Identities=59% Similarity=0.989 Sum_probs=272.2
Q ss_pred ccCCCchhHHHHhHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhhc
Q 010875 216 NENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQ 295 (498)
Q Consensus 216 ~~~~~~Ds~vr~lkDQli~AkaY~~IAk~~~n~~L~~EL~~~IrE~qr~LseA~~D~dLp~~a~~kik~M~~~l~kAK~~ 295 (498)
.+++|+|++||+|||||||||||++|||++||++|+|||++||||+||+||||++|+|||+++.++|++|+++|++||++
T Consensus 176 ~~~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~~ 255 (639)
T PLN02829 176 DQTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQM 255 (639)
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhhccCCCcccccchhhhHHhhcCCCcCCCCCCCCCCCCCCcceEE
Q 010875 296 LYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYA 375 (498)
Q Consensus 296 ~yDc~~~~~KLRamL~~~Eeq~~~~kkQsafl~qLAA~tiPKsLHCLsMRLT~EYf~~~~~~~~~p~~ekLeDpsLyHYa 375 (498)
+|||+++++|||+||+++|||+++|++|++||+||||+|+|||||||+||||+|||+++++++++|++++|+||+|||||
T Consensus 256 ~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy~ 335 (639)
T PLN02829 256 QDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEKLEDPQLYHYA 335 (639)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCChhhccCCChhhccCCccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecceeeeehhhhhhhhcccCCCCeEEEEecCccchHHHHHHHhcCCCCCceEEEeeecccccccCCchhHHHhhhccc
Q 010875 376 LFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESAS 455 (498)
Q Consensus 376 IFSDNVLAASVVVNSTV~nAkeP~k~VFHVVTDk~Ny~AMk~WF~~Np~~~AtVeV~nIedF~WLnssy~pVLrqLes~~ 455 (498)
|||||||||||||||||+||++|+|||||||||++||+||+|||++|||++|||||+|||||+|||++|+||||||++++
T Consensus 336 ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln~~~~pvl~ql~~~~ 415 (639)
T PLN02829 336 LFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVLKQLGSQS 415 (639)
T ss_pred EEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhcccccccccHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCCcccCccccccCCCcchhhhhhcccccCCC
Q 010875 456 MKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQE 497 (498)
Q Consensus 456 ~~~yYf~~~~~~~~~~~~~~lK~rnPKYLSmLNHLRFYLPEi 497 (498)
|++|||++++++ ..+++|||||+|+|++||+||||||+
T Consensus 416 ~~~~yf~~~~~~----~~~~~k~r~p~ylS~lnY~RfyLPeL 453 (639)
T PLN02829 416 MIDYYFRAHRAN----SDSNLKYRNPKYLSILNHLRFYLPEI 453 (639)
T ss_pred hhhhhhhccccC----cccccccCCcchhhHHHHHHHHHHHH
Confidence 999999986543 46899999999999999999999986
No 4
>PLN02742 Probable galacturonosyltransferase
Probab=100.00 E-value=5.8e-103 Score=819.42 Aligned_cols=279 Identities=39% Similarity=0.672 Sum_probs=269.2
Q ss_pred cccCCCchhHHHHhHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhcccccCcCC--CCCHHHHHHHHHHHHHHh
Q 010875 215 ENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADL--HHSVPEKIKLMGQVLSKA 292 (498)
Q Consensus 215 e~~~~~~Ds~vr~lkDQli~AkaY~~IAk~~~n~~L~~EL~~~IrE~qr~LseA~~D~dL--p~~a~~kik~M~~~l~kA 292 (498)
-.|.+++|++||+|||||||||||++|||++||++|+|||++||||+||+||+|++|+++ ++++.++|+.|+++|++|
T Consensus 66 ~~~~~~~~~~~~~l~dql~~Ak~y~~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~a 145 (534)
T PLN02742 66 TEEMLSATSFSRQLADQITLAKAYVVIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQA 145 (534)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999985 489999999999999999
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhhccCCCcccccchhhhHHhhcCCCcC---CCCCCCCCCCCC
Q 010875 293 REQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEK---RKFPGSENLENP 369 (498)
Q Consensus 293 K~~~yDc~~~~~KLRamL~~~Eeq~~~~kkQsafl~qLAA~tiPKsLHCLsMRLT~EYf~~~~~~---~~~p~~ekLeDp 369 (498)
|+++|||+++++|||+||+++|||+++|++|++||+||||+|+|||||||+||||+|||++++++ .++|+.++|+||
T Consensus 146 k~~~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~ 225 (534)
T PLN02742 146 QDLHYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEEKRNSPRLVDN 225 (534)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999995 446788899999
Q ss_pred CcceEEEEecceeeeehhhhhhhhcccCCCCeEEEEecCccchHHHHHHHhcCCCCCceEEEeeecccccccCCchhHHH
Q 010875 370 NLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLR 449 (498)
Q Consensus 370 sLyHYaIFSDNVLAASVVVNSTV~nAkeP~k~VFHVVTDk~Ny~AMk~WF~~Np~~~AtVeV~nIedF~WLnssy~pVLr 449 (498)
+||||||||||||||||||||||+||++|+|+|||||||++||+||++||++||+++|+|||+|||+|+|||.+|+||||
T Consensus 226 ~l~Hy~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ 305 (534)
T PLN02742 226 NLYHFCVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLK 305 (534)
T ss_pred CcceEEEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhhhhccCCCCCcccCccccccCCCcchhhhhhcccccCCC
Q 010875 450 QLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQE 497 (498)
Q Consensus 450 qLes~~~~~yYf~~~~~~~~~~~~~~lK~rnPKYLSmLNHLRFYLPEi 497 (498)
||+++.++.|||+++.. ++.++.|||||+|+|++||+||||||+
T Consensus 306 ql~~~~~~~~yf~~~~~----~~~~~~k~r~p~y~s~~~y~R~~lP~l 349 (534)
T PLN02742 306 QLQDSDTQSYYFSGSQD----DGKTEIKFRNPKYLSMLNHLRFYIPEI 349 (534)
T ss_pred Hhhhhhhhhhhcccccc----cccccccccCcccccHHHHHHHHHHHH
Confidence 99999999999998763 366899999999999999999999985
No 5
>PLN02867 Probable galacturonosyltransferase
Probab=100.00 E-value=3.9e-87 Score=700.90 Aligned_cols=241 Identities=29% Similarity=0.471 Sum_probs=224.7
Q ss_pred HHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhhccCC
Q 010875 257 RLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIP 336 (498)
Q Consensus 257 ~IrE~qr~LseA~~D~dLp~~a~~kik~M~~~l~kAK~~~yDc~~~~~KLRamL~~~Eeq~~~~kkQsafl~qLAA~tiP 336 (498)
-.+|++|+|+||+.|.++|+.+.++.+.|+++++++++.+|||+++++|||+|++++||+++++|+|++||+||||+|+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~P 173 (535)
T PLN02867 94 LREELTRALVEAKEQDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIP 173 (535)
T ss_pred HHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchhhhHHhhcCCCcCCCCCCCC---CCCCCCcceEEEEecceeeeehhhhhhhhcccCCCCeEEEEecCccchH
Q 010875 337 NGIHCMSMRLTIEYYLLPPEKRKFPGSE---NLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFG 413 (498)
Q Consensus 337 KsLHCLsMRLT~EYf~~~~~~~~~p~~e---kLeDpsLyHYaIFSDNVLAASVVVNSTV~nAkeP~k~VFHVVTDk~Ny~ 413 (498)
||||||+||||+|||+++++++++|++| +|+||+||||||||||||||||||||||+||++|+|||||||||++||+
T Consensus 174 K~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VfHvvTD~~ny~ 253 (535)
T PLN02867 174 KSLHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKKTYT 253 (535)
T ss_pred CCccccchhhHHHHHhCchhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccH
Confidence 9999999999999999999999999877 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceEEEeeecccccccCCchhHHHhhhccchhhhhhccCCCC----CcccCccccccCCCcchhhhhh
Q 010875 414 AMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPT----TLSSGASNLKYRNPKYLSMLNH 489 (498)
Q Consensus 414 AMk~WF~~Np~~~AtVeV~nIedF~WLnssy~pVLrqLes~~~~~yYf~~~~~~----~~~~~~~~lK~rnPKYLSmLNH 489 (498)
||+|||++|||++|||||+|||||+|||++|+||++|+|+++++..||.++..+ ......+++|||||||||+|||
T Consensus 254 aM~~WF~~n~~~~a~v~V~~~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkylS~lnY 333 (535)
T PLN02867 254 PMHAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLNH 333 (535)
T ss_pred HHHHHHhhCCCccceEEEEeehhccccccccccHHHHHHHhhhhhhhhhccccccccccccccccchhhcChhhhhHHHH
Confidence 999999999999999999999999999999999999999999874333222211 1122457899999999999999
Q ss_pred cccccCCC
Q 010875 490 LRFYLPQE 497 (498)
Q Consensus 490 LRFYLPEi 497 (498)
+||||||+
T Consensus 334 lRflIPeL 341 (535)
T PLN02867 334 LRIYIPEL 341 (535)
T ss_pred HHHHHHHH
Confidence 99999995
No 6
>PLN02870 Probable galacturonosyltransferase
Probab=100.00 E-value=1.7e-86 Score=694.86 Aligned_cols=239 Identities=36% Similarity=0.594 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHh
Q 010875 250 LQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQ 329 (498)
Q Consensus 250 L~~EL~~~IrE~qr~LseA~~D~dLp~~a~~kik~M~~~l~kAK~~~yDc~~~~~KLRamL~~~Eeq~~~~kkQsafl~q 329 (498)
+.+||.+-+.| ---+||+.|++||+++.++|+ +||+.+|||+++++|||+|++++|||++++|+|++|++|
T Consensus 91 ~~~~~~~~l~~--~~~~~~~~d~~lp~s~~~~~~-------~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~ 161 (533)
T PLN02870 91 LVRDFYKILNE--VNTEEIPDGLKLPDSFSQLVS-------DMKNNHYDAKTFAFVLRAMMEKFERELRESKFAELMNKH 161 (533)
T ss_pred hHHHHHHHHHH--hccccccccccCChhHHHHHH-------HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333 334689999999999888877 578899999999999999999999999999999999999
Q ss_pred hhhccCCCcccccchhhhHHhhcCCCcCCCCCCCC---CCCCCCcceEEEEecceeeeehhhhhhhhcccCCCCeEEEEe
Q 010875 330 LAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSE---NLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLV 406 (498)
Q Consensus 330 LAA~tiPKsLHCLsMRLT~EYf~~~~~~~~~p~~e---kLeDpsLyHYaIFSDNVLAASVVVNSTV~nAkeP~k~VFHVV 406 (498)
|||+|||||||||+||||+|||+++++++++|++| +|+||+||||||||||||||||||||||+||++|+|||||||
T Consensus 162 laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VFHvv 241 (533)
T PLN02870 162 FAASSIPKGIHCLSLRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIVFHVI 241 (533)
T ss_pred HHHhhcCCCccccchhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhcccCccceEEEEe
Confidence 99999999999999999999999999999999877 999999999999999999999999999999999999999999
Q ss_pred cCccchHHHHHHHhcCCCCCceEEEeeecccccccCCchhHHHhhhccchhhhhhccCCCC-CcccC------ccccccC
Q 010875 407 TDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPT-TLSSG------ASNLKYR 479 (498)
Q Consensus 407 TDk~Ny~AMk~WF~~Np~~~AtVeV~nIedF~WLnssy~pVLrqLes~~~~~yYf~~~~~~-~~~~~------~~~lK~r 479 (498)
||++||+||||||++|||++|||||+|||||+|||++|+|||+|+|+++++++||.+++.. ....+ .+++|||
T Consensus 242 TD~~n~~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (533)
T PLN02870 242 TDKKTYAGMHSWFALNSVSPAIVEVKGVHQFDWLTRENVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKLQAR 321 (533)
T ss_pred cCccccHHHHHHHhhCCCccceEEEEehhhccccccccchHHHHHhhhHHHHHHhhcccccccccccccchhhhcccccC
Confidence 9999999999999999999999999999999999999999999999999976666544332 22222 4689999
Q ss_pred CCcchhhhhhcccccCCC
Q 010875 480 NPKYLSMLNHLRFYLPQE 497 (498)
Q Consensus 480 nPKYLSmLNHLRFYLPEi 497 (498)
||||+|++||+||||||+
T Consensus 322 ~p~ylS~lny~Rl~LPel 339 (533)
T PLN02870 322 SPKYISLLNHLRIYLPEL 339 (533)
T ss_pred CccccCHHHHHHHHHHHH
Confidence 999999999999999985
No 7
>PLN02718 Probable galacturonosyltransferase
Probab=100.00 E-value=5.5e-85 Score=691.27 Aligned_cols=255 Identities=48% Similarity=0.817 Sum_probs=250.3
Q ss_pred CCCchhHHHHhHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhhccc
Q 010875 218 NDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLY 297 (498)
Q Consensus 218 ~~~~Ds~vr~lkDQli~AkaY~~IAk~~~n~~L~~EL~~~IrE~qr~LseA~~D~dLp~~a~~kik~M~~~l~kAK~~~y 297 (498)
..|+|++||+|||||||||||++|||++||++|+|||++||||+||+||+|+.|+|||+++.++|++|+++|++||+++|
T Consensus 160 ~~~~d~~v~~~~dql~~ak~y~~~a~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~a~~~~~ 239 (603)
T PLN02718 160 RRATDEKVKEIRDKIIQAKAYLNLAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVFP 239 (603)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHHHHhccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhhccCCCcccccchhhhHHhhcCCCcCCCCCCCCCCCCCCcceEEEE
Q 010875 298 DCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALF 377 (498)
Q Consensus 298 Dc~~~~~KLRamL~~~Eeq~~~~kkQsafl~qLAA~tiPKsLHCLsMRLT~EYf~~~~~~~~~p~~ekLeDpsLyHYaIF 377 (498)
||.+|++||||||+++||++++|++|++||+||||+|+|||||||+||||+|||+++++++++|++++|+||++||||+|
T Consensus 240 d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~~~~~~~l~d~~~~Hia~~ 319 (603)
T PLN02718 240 NCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQLPNQQRYNDPDLYHYVVF 319 (603)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhccCCChhhccCCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeeeehhhhhhhhcccCCCCeEEEEecCccchHHHHHHHhcCCCCCceEEEeeecccccccCCchhHHHhhhccchh
Q 010875 378 SDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMK 457 (498)
Q Consensus 378 SDNVLAASVVVNSTV~nAkeP~k~VFHVVTDk~Ny~AMk~WF~~Np~~~AtVeV~nIedF~WLnssy~pVLrqLes~~~~ 457 (498)
||||+||||||||++.||++|+++|||||||++||++|++||.+|++.+|+|+|.+|++|+||+.+|+++++++++
T Consensus 320 sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~~lk~l~s---- 395 (603)
T PLN02718 320 SDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQNS---- 395 (603)
T ss_pred cCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccchhhhhhccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhhccCCCCCcccCccccccCCCcchhhhhhcccccCCC
Q 010875 458 EYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQE 497 (498)
Q Consensus 458 ~yYf~~~~~~~~~~~~~~lK~rnPKYLSmLNHLRFYLPEi 497 (498)
++|+|+|+++|+||||||+
T Consensus 396 ---------------------~~~~~~S~~~y~Rl~ipel 414 (603)
T PLN02718 396 ---------------------HDPRYISALNHARFYLPDI 414 (603)
T ss_pred ---------------------cccccccHHHHHHHHHHHH
Confidence 4589999999999999985
No 8
>PLN02659 Probable galacturonosyltransferase
Probab=100.00 E-value=8.6e-86 Score=689.67 Aligned_cols=224 Identities=29% Similarity=0.538 Sum_probs=207.6
Q ss_pred ccccCcCCCCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhhccCCCcccccchhh
Q 010875 267 DTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRL 346 (498)
Q Consensus 267 eA~~D~dLp~~a~~kik~M~~~l~kAK~~~yDc~~~~~KLRamL~~~Eeq~~~~kkQsafl~qLAA~tiPKsLHCLsMRL 346 (498)
|...|.++|.+ +++++.++++.+|||.+|++||||||+++||+++++|+|+.++.||||+|+|||||||+|||
T Consensus 107 e~~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa~t~PK~lHCL~mrL 179 (534)
T PLN02659 107 ELKGRSDIPQT-------LEEFMDEVKNSRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRL 179 (534)
T ss_pred ccCCccccchH-------HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhh
Confidence 56666688877 45555567778999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCcCCCCCCCC---CCCCCCcceEEEEecceeeeehhhhhhhhcccCCCCeEEEEecCccchHHHHHHHhcCC
Q 010875 347 TIEYYLLPPEKRKFPGSE---NLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNP 423 (498)
Q Consensus 347 T~EYf~~~~~~~~~p~~e---kLeDpsLyHYaIFSDNVLAASVVVNSTV~nAkeP~k~VFHVVTDk~Ny~AMk~WF~~Np 423 (498)
|+|||+++++++++|++| +|+||+||||||||||||||||||||||+||++|+|||||||||++||+||+|||++||
T Consensus 180 t~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~VFHivTD~~ny~aM~~WF~~n~ 259 (534)
T PLN02659 180 ANEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLHIITDRKTYSPMQAWFSLHP 259 (534)
T ss_pred HHHHHhCchhhhccCCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCC
Confidence 999999999999999877 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeeecccccccCCchhHHHhhhccchhhhhhccCCCCCccc-------CccccccCCCcchhhhhhcccccCC
Q 010875 424 PGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSS-------GASNLKYRNPKYLSMLNHLRFYLPQ 496 (498)
Q Consensus 424 ~~~AtVeV~nIedF~WLnssy~pVLrqLes~~~~~yYf~~~~~~~~~~-------~~~~lK~rnPKYLSmLNHLRFYLPE 496 (498)
|++|||||+|||||+|||++|+|||||||++.+++|||+++++.+... .++++|+|||||||||||+||||||
T Consensus 260 ~~~a~v~V~~~e~f~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~~nY~RL~IPe 339 (534)
T PLN02659 260 LSPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPE 339 (534)
T ss_pred CccceEEEEeehhcccccccccHHHHHHhhhhhhhhhhcccccccccccccCccccccccccCCccceeHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999877532222 2468999999999999999999998
Q ss_pred C
Q 010875 497 E 497 (498)
Q Consensus 497 i 497 (498)
+
T Consensus 340 L 340 (534)
T PLN02659 340 L 340 (534)
T ss_pred H
Confidence 5
No 9
>PLN02523 galacturonosyltransferase
Probab=100.00 E-value=8.2e-78 Score=631.59 Aligned_cols=274 Identities=41% Similarity=0.690 Sum_probs=237.2
Q ss_pred hhHHHHhHHHHHHHHhhhhhhccC-----CCchHHHHHHHHHHHHHH------Hhccc--ccC----cCCCCCHHHHHHH
Q 010875 222 DSTVRLMRDQMIMARVYLSIAKMK-----NKPDLQQELQSRLKESQR------ALGDT--AAD----ADLHHSVPEKIKL 284 (498)
Q Consensus 222 Ds~vr~lkDQli~AkaY~~IAk~~-----~n~~L~~EL~~~IrE~qr------~LseA--~~D----~dLp~~a~~kik~ 284 (498)
|.+.|+-.|-..++-||...|.-- .+..+--+|..+.-++.. ++++. +.| .+||+++.++||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 160 (559)
T PLN02523 81 DQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFADLSRNFTDLISKPSYRALLSSDGSAIDEDVLRQFEKEVKERVKV 160 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhcCccccccccccCCcCchHHHhhcchhHHHHHHH
Confidence 455667778888888887776421 112233344444443221 11111 122 2589999999999
Q ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhhccCCCcccccchhhhHHhhcCCCcCCC--CCC
Q 010875 285 MGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRK--FPG 362 (498)
Q Consensus 285 M~~~l~kAK~~~yDc~~~~~KLRamL~~~Eeq~~~~kkQsafl~qLAA~tiPKsLHCLsMRLT~EYf~~~~~~~~--~p~ 362 (498)
|+++|++||+ .|||+++++|||+|++++|||++++|+|++|++||||+|||||||||+||||+|||++++.+++ .|+
T Consensus 161 ~~~~~~~a~~-~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~ 239 (559)
T PLN02523 161 ARQMIAESKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKDEGKPP 239 (559)
T ss_pred HHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHhChHhhhccCCCc
Confidence 9999999997 9999999999999999999999999999999999999999999999999999999999987544 566
Q ss_pred CCCCCCCCcceEEEEecceeeeehhhhhhhhcccCCCCeEEEEecCccchHHHHHHHhcCCCCCceEEEeeecccccccC
Q 010875 363 SENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNS 442 (498)
Q Consensus 363 ~ekLeDpsLyHYaIFSDNVLAASVVVNSTV~nAkeP~k~VFHVVTDk~Ny~AMk~WF~~Np~~~AtVeV~nIedF~WLns 442 (498)
+++|+||+||||||||||||||||||||||+||++|+++|||||||++||+||++||++||+++|+|||++||||+|+|+
T Consensus 240 ~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ln~ 319 (559)
T PLN02523 240 PPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKFLNS 319 (559)
T ss_pred chhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhhccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHhhhccchhhhhhccCCCCCcccCccccccCCCcchhhhhhcccccCCC
Q 010875 443 SYCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQE 497 (498)
Q Consensus 443 sy~pVLrqLes~~~~~yYf~~~~~~~~~~~~~~lK~rnPKYLSmLNHLRFYLPEi 497 (498)
+|+||++|++++++++|||+++.... +.+..++|||||+|+|++||+||||||+
T Consensus 320 ~~~pvlk~l~s~~~~~~~f~~~~~~~-~~~~~~~k~~~p~ylS~~ny~Rf~IPeL 373 (559)
T PLN02523 320 SYVPVLRQLESANLQKFYFENKLENA-TKDSSNMKFRNPKYLSMLNHLRFYLPEM 373 (559)
T ss_pred ccchHHHhhhhhhhhhhhcccccccc-ccccccccccCcchhhHHHHHHHHHHHH
Confidence 99999999999999999999876643 3456899999999999999999999996
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.86 E-value=2e-22 Score=196.37 Aligned_cols=110 Identities=54% Similarity=0.803 Sum_probs=105.0
Q ss_pred ceEEEEecceeeeehhhhhhhhcccCCCCeEEEEecCccchHHHHHHHhcCCCCCceEEEeeecccccccCCchhHHHhh
Q 010875 372 YHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQL 451 (498)
Q Consensus 372 yHYaIFSDNVLAASVVVNSTV~nAkeP~k~VFHVVTDk~Ny~AMk~WF~~Np~~~AtVeV~nIedF~WLnssy~pVLrqL 451 (498)
+|+|++|||+||++||++|++.|.++|.++|||||||.+++.+|+.||.++++.+++|+|.+++++.|++..++++++|+
T Consensus 1 ~hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred CCEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhhhccCCCCCcccCccccccCCCcchhhhhhcccccCCC
Q 010875 452 ESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQE 497 (498)
Q Consensus 452 es~~~~~yYf~~~~~~~~~~~~~~lK~rnPKYLSmLNHLRFYLPEi 497 (498)
++.. ..+++|+.+|+|+|.++|+||||||+
T Consensus 81 ~~~~----------------~~~~~~~~~~~~~s~~~y~Rl~ip~l 110 (257)
T cd06429 81 ESEA----------------DTSNLKQRKPEYISLLNFARFYLPEL 110 (257)
T ss_pred hccc----------------cccccccCCccccCHHHHHHHHHHHH
Confidence 9965 34678999999999999999999985
No 11
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=95.13 E-value=0.024 Score=54.33 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=43.1
Q ss_pred ceEEEEecc---eeeeehhhhhhhhcccCCCCeEEEEecCccchHHHHHHHhcCCCCCceEEEeeecc
Q 010875 372 YHYALFSDN---VLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDE 436 (498)
Q Consensus 372 yHYaIFSDN---VLAASVVVNSTV~nAkeP~k~VFHVVTDk~Ny~AMk~WF~~Np~~~AtVeV~nIed 436 (498)
.|+++++++ +--++|++.|-+.|.++ ...|||+||..+-.-.+..-.+-...+..|++-.++.
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~ 66 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDI 66 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccc
Confidence 367777555 56788999999999876 7999999999776444433222222256777776653
No 12
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=92.09 E-value=0.15 Score=46.75 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=33.3
Q ss_pred ceeeeehhhhhhhhcccCCCCeEEEEecCccchHHHHHHHhc
Q 010875 380 NVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLL 421 (498)
Q Consensus 380 NVLAASVVVNSTV~nAkeP~k~VFHVVTDk~Ny~AMk~WF~~ 421 (498)
-+.++.|+++|...|+.+|...+|||+||..+-...+.--..
T Consensus 10 y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~ 51 (250)
T PF01501_consen 10 YLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRAL 51 (250)
T ss_dssp GHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhh
Confidence 367899999999999999999999999999886666654333
No 13
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=91.50 E-value=0.15 Score=51.15 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=44.7
Q ss_pred EEecc-eeeeehhhhhhhhcccCCCCeEEEEecCccchHHHHHHHhcCCCCCceEEEeeeccc
Q 010875 376 LFSDN-VLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEF 437 (498)
Q Consensus 376 IFSDN-VLAASVVVNSTV~nAkeP~k~VFHVVTDk~Ny~AMk~WF~~Np~~~AtVeV~nIedF 437 (498)
+..+| +..++|.+.|-+.|.. ....|||+||..+-.-.+.+...=...++.|..-.++++
T Consensus 7 ~~~~~y~~~~~~~i~Sil~n~~--~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~ 67 (280)
T cd06431 7 CAGYNASRDVVTLVKSVLFYRR--NPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEEL 67 (280)
T ss_pred EccCCcHHHHHHHHHHHHHcCC--CCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHh
Confidence 33577 7889999999999963 459999999998887777776443334677777776543
No 14
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=84.94 E-value=0.73 Score=43.91 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=41.3
Q ss_pred eEEEEecc--eeeeehhhhhhhhcccCCCCeEEEEecCc---cchHHHHHHHhcCCCCCceEEEeeec
Q 010875 373 HYALFSDN--VLAASVVVNSTIMNAKDSSKHVFHLVTDK---LNFGAMNMWFLLNPPGKAAIHVENVD 435 (498)
Q Consensus 373 HYaIFSDN--VLAASVVVNSTV~nAkeP~k~VFHVVTDk---~Ny~AMk~WF~~Np~~~AtVeV~nIe 435 (498)
|.|+.+|. +-.+.|.++|.+.|..+ ....|||+||. .+...++.++.. .+..|++..++
T Consensus 2 ~I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~---~~~~i~~~~i~ 65 (248)
T cd04194 2 NIVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKKKLKELLKK---YNSSIEFIKID 65 (248)
T ss_pred CEEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHHHHHHHHHh---cCCeEEEEEcC
Confidence 34444443 34577889999999876 67999999986 457777777765 35566666654
No 15
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=77.97 E-value=5.6 Score=34.42 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhcccc--cCcCCCCCHHHHHHHHHHHHHHhhhcc--cchHHHHHHHHHHHHHHHHHHHHHH
Q 010875 252 QELQSRLKESQRALGDTA--ADADLHHSVPEKIKLMGQVLSKAREQL--YDCKLVTGKLRAMLQTADEQVRSLK 321 (498)
Q Consensus 252 ~EL~~~IrE~qr~LseA~--~D~dLp~~a~~kik~M~~~l~kAK~~~--yDc~~~~~KLRamL~~~Eeq~~~~k 321 (498)
+++.-.|+--|+++|-|| +|+++-+.|...|+..+.-|.+|++.. .|- .+...=...|+..|-|++.+|
T Consensus 6 kQve~aVetAqkmvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~at~lD~-~Fl~~~~~~L~~~eHQL~Eak 78 (79)
T PF10819_consen 6 KQVEMAVETAQKMVGQATMSMDPDQLEHATQAVEDAREQLSQAKSHATGLDE-PFLQQSEQLLDDCEHQLDEAK 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHhc
Confidence 567788999999999999 677788999999999998888888655 444 677888888999999988765
No 16
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=74.13 E-value=2.6 Score=43.41 Aligned_cols=47 Identities=26% Similarity=0.341 Sum_probs=35.7
Q ss_pred CCcceEEEEecc--eeeeehhhhhhhhcccCCCCeEEEEecCccchHHHH
Q 010875 369 PNLYHYALFSDN--VLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMN 416 (498)
Q Consensus 369 psLyHYaIFSDN--VLAASVVVNSTV~nAkeP~k~VFHVVTDk~Ny~AMk 416 (498)
+.--|.|+.+|+ +.-++|++.|-+.|..+ ....|||+||..+=.-.+
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~ 71 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQ 71 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHH
Confidence 356888888776 45688999999998433 368999999988754443
No 17
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=67.06 E-value=15 Score=35.78 Aligned_cols=108 Identities=12% Similarity=0.127 Sum_probs=77.7
Q ss_pred CCCchhHHHHhHHHHHHHHhh--hhhhccCCCchHHHHHHHHHHHHHHHhcccccCc--CCCCCHHHHHHHHHHHHHHhh
Q 010875 218 NDNSDSTVRLMRDQMIMARVY--LSIAKMKNKPDLQQELQSRLKESQRALGDTAADA--DLHHSVPEKIKLMGQVLSKAR 293 (498)
Q Consensus 218 ~~~~Ds~vr~lkDQli~AkaY--~~IAk~~~n~~L~~EL~~~IrE~qr~LseA~~D~--dLp~~a~~kik~M~~~l~kAK 293 (498)
+.+-+-+++.|+|+|.-||.= -.+|..+.-.+=+.++..++.+++.-...|-..+ +|-+++......-+..+..-+
T Consensus 26 ~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~ 105 (219)
T TIGR02977 26 EKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALE 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888999998888763 4455555555566788888888877666665444 588888777777777776666
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 010875 294 EQLYDCKLVTGKLRAMLQTADEQVRSLKKQST 325 (498)
Q Consensus 294 ~~~yDc~~~~~KLRamL~~~Eeq~~~~kkQsa 325 (498)
...-.-...+.+|+.-|..++.++...+.+-.
T Consensus 106 ~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 106 RELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777888888888888888877765544
No 18
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.17 E-value=24 Score=33.74 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=73.7
Q ss_pred CCCchhHHHHhHHHHHHHHh-h-hhhhccCCCchHHHHHHHHHHHHHHHhcccccCc--CCCCCHHHHHHHHHHHHHHhh
Q 010875 218 NDNSDSTVRLMRDQMIMARV-Y-LSIAKMKNKPDLQQELQSRLKESQRALGDTAADA--DLHHSVPEKIKLMGQVLSKAR 293 (498)
Q Consensus 218 ~~~~Ds~vr~lkDQli~Aka-Y-~~IAk~~~n~~L~~EL~~~IrE~qr~LseA~~D~--dLp~~a~~kik~M~~~l~kAK 293 (498)
+.+-|-.+|.|.++|.-|+. . -.+|..+.-.+=+.++...+.+++.-...|-.-+ ||-..+..+....+..+...+
T Consensus 25 ~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 25 EKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888887775 2 3444444444555666677777766666664333 588888888888888777777
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010875 294 EQLYDCKLVTGKLRAMLQTADEQVRSLKKQS 324 (498)
Q Consensus 294 ~~~yDc~~~~~KLRamL~~~Eeq~~~~kkQs 324 (498)
...-.....+.+|+..|..++.++...+.+-
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7667777778888888888888877665543
No 19
>PRK10698 phage shock protein PspA; Provisional
Probab=50.14 E-value=43 Score=33.09 Aligned_cols=106 Identities=8% Similarity=0.108 Sum_probs=70.0
Q ss_pred CCCchhHHHHhHHHHHHHHhh--hhhhccCCCchHHHHHHHHHHHHHHHhcccccCc--CCCCCHHHHHHHHHHHHHHhh
Q 010875 218 NDNSDSTVRLMRDQMIMARVY--LSIAKMKNKPDLQQELQSRLKESQRALGDTAADA--DLHHSVPEKIKLMGQVLSKAR 293 (498)
Q Consensus 218 ~~~~Ds~vr~lkDQli~AkaY--~~IAk~~~n~~L~~EL~~~IrE~qr~LseA~~D~--dLp~~a~~kik~M~~~l~kAK 293 (498)
+.|-+-+++.|+|++.=+|.= -.||..+.-.+=+.++...+.++++--.-|-.-+ +|-+.|...=+.....+..-+
T Consensus 26 ~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~ 105 (222)
T PRK10698 26 QKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLE 105 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888776652 3445455445555677777777766555554333 577776666666666666666
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 010875 294 EQLYDCKLVTGKLRAMLQTADEQVRSLKKQ 323 (498)
Q Consensus 294 ~~~yDc~~~~~KLRamL~~~Eeq~~~~kkQ 323 (498)
...-.....+.+|+..+..++.++..++.+
T Consensus 106 ~~~~~~~~~~~~L~~~l~~L~~ki~eak~k 135 (222)
T PRK10698 106 HEVTLVDETLARMKKEIGELENKLSETRAR 135 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777888888888888887766543
No 20
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=47.48 E-value=3.6e+02 Score=28.35 Aligned_cols=104 Identities=22% Similarity=0.278 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhccCc-------Cccccccccchhhccc---CCCchhHHHHhHHHH
Q 010875 163 FRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSV-------DSAVLGKYSIWRKENE---NDNSDSTVRLMRDQM 232 (498)
Q Consensus 163 ~~~~~~~~~~~~r~~~l~~~~~~~~~~~e~~~~e~sk~~-------~~~~~g~y~iWr~e~~---~~~~Ds~vr~lkDQl 232 (498)
++|+.|.+-|+.|-.||.+|-+|....-+..-..++-+. .....|..+--|--.. .+.+++-++-|||+|
T Consensus 7 akR~araEAR~iRmreLErqqkE~ee~~Dr~~~~~~Sr~~s~ls~~t~~S~~~sSSRRsS~DtSsS~dse~s~r~lk~~l 86 (302)
T PF09738_consen 7 AKRAARAEAREIRMRELERQQKEQEENSDRRYDSSSSRRHSDLSQWTLNSLRGSSSRRSSGDTSSSVDSEASLRDLKDSL 86 (302)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccCCccchhhhcCCCCCCCCCCCCcccccccccccHHHHHHHH
Confidence 578899999999999999998885543333322222111 0112233333333222 233445677888877
Q ss_pred HHH-----HhhhhhhccCCC-chHH---HHHHHHHHHHHHHhc
Q 010875 233 IMA-----RVYLSIAKMKNK-PDLQ---QELQSRLKESQRALG 266 (498)
Q Consensus 233 i~A-----kaY~~IAk~~~n-~~L~---~EL~~~IrE~qr~Ls 266 (498)
.=- ||-++-|.+.|. ..|. .=|+..+-|+|..+.
T Consensus 87 ~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~ 129 (302)
T PF09738_consen 87 AEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLA 129 (302)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 344666666654 2222 224455555444443
No 21
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=46.83 E-value=71 Score=29.08 Aligned_cols=75 Identities=25% Similarity=0.245 Sum_probs=56.7
Q ss_pred chHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhhcccch-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 010875 248 PDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDC-KLVTGKLRAMLQTADEQVRSLKKQS 324 (498)
Q Consensus 248 ~~L~~EL~~~IrE~qr~LseA~~D~dLp~~a~~kik~M~~~l~kAK~~~yDc-~~~~~KLRamL~~~Eeq~~~~kkQs 324 (498)
.++.-||+.=+.+.|.+|.....+++ .++.+.=...+.+|.+++...-|. ..++.+-|+++..+|+-++.+-=|+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~--~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~ 86 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAG--DEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQG 86 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchh--hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 67888999999999999998875552 233344445666777777666666 7889999999999999998775554
No 22
>PRK10132 hypothetical protein; Provisional
Probab=42.24 E-value=99 Score=27.84 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 010875 248 PDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQST 325 (498)
Q Consensus 248 ~~L~~EL~~~IrE~qr~LseA~~D~dLp~~a~~kik~M~~~l~kAK~~~yDc~~~~~KLRamL~~~Eeq~~~~kkQsa 325 (498)
.+|..||+.=+.++|.+|.++..++. .++.+.=...+..|..+++..-|...+..+.|.....+++.++.+--++.
T Consensus 15 e~L~~Dl~~L~~~le~ll~~~~~~~~--~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv 90 (108)
T PRK10132 15 QDIQNDVNQLADSLESVLKSWGSDAK--GEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV 90 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 68889999999999999977764441 22333334456677888876777777778889999999999988766653
No 23
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=36.05 E-value=78 Score=24.58 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.4
Q ss_pred hHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHh
Q 010875 228 MRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRAL 265 (498)
Q Consensus 228 lkDQli~AkaY~~IAk~~~n~~L~~EL~~~IrE~qr~L 265 (498)
|-+||..-+.|+.-||..+..+=+.-|..+++|++.-+
T Consensus 1 LleQi~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~ 38 (42)
T PF11464_consen 1 LLEQINIIESYIKQAKAARRFDEVATLEENLRELQDEI 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999998754
No 24
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=31.53 E-value=21 Score=36.13 Aligned_cols=151 Identities=14% Similarity=0.245 Sum_probs=80.6
Q ss_pred hhhcchHHHHHHHHHHHhhccCcCccccccccchhhcccCCCchhHHHHhHHHHHHHHhhhhhhccCCCchHHHHHHHHH
Q 010875 179 LVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRL 258 (498)
Q Consensus 179 l~~~~~~~~~~~e~~~~e~sk~~~~~~~g~y~iWr~e~~~~~~Ds~vr~lkDQli~AkaY~~IAk~~~n~~L~~EL~~~I 258 (498)
|+=.||.-++.+-..-++..+.|. ++|--.+ ....-.+++..+-.||+=-.|. +-.+-..|.+|++.+-
T Consensus 4 LIiEDD~mVaeih~~yv~~~~gF~-------~vg~A~~-~~ea~~~i~~~~pDLILLDiYm---Pd~~Gi~lL~~ir~~~ 72 (224)
T COG4565 4 LIIEDDPMVAEIHRRYVKQIPGFS-------VVGTAGT-LEEAKMIIEEFKPDLILLDIYM---PDGNGIELLPELRSQH 72 (224)
T ss_pred EEEcCchHHHHHHHHHHHhCCCce-------EEEeecc-HHHHHHHHHhhCCCEEEEeecc---CCCccHHHHHHHHhcC
Confidence 344566666666666666666664 3441110 0111223333344455544552 3355589999999776
Q ss_pred HHHHHHhcccccCcC--------------CCCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010875 259 KESQRALGDTAADAD--------------LHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQS 324 (498)
Q Consensus 259 rE~qr~LseA~~D~d--------------Lp~~a~~kik~M~~~l~kAK~~~yDc~~~~~KLRamL~~~Eeq~~~~kkQs 324 (498)
.++.-++--|+.|.+ +.|.. -..+++.|.+-++ .-..|+..=+.--+++.....+.
T Consensus 73 ~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~---~eRl~~aL~~y~~-------~r~~l~~~~~~sQ~~lD~l~~~~ 142 (224)
T COG4565 73 YPVDVIVITAASDMETIKEALRYGVVDYLIKPFT---FERLQQALTRYRQ-------KRHALESHQQLSQKELDQLFNIQ 142 (224)
T ss_pred CCCCEEEEeccchHHHHHHHHhcCchhheeccee---HHHHHHHHHHHHH-------HHHHHhhhcccCHHHHHHHHhcc
Confidence 665555555555544 33333 3445556655443 11122221122222333332222
Q ss_pred HHhHhhhhccCCCcccccchhhhHHhhc
Q 010875 325 TFLSQLAAKTIPNGIHCMSMRLTIEYYL 352 (498)
Q Consensus 325 afl~qLAA~tiPKsLHCLsMRLT~EYf~ 352 (498)
+ .+-....+||||+-+.|+...|+|.
T Consensus 143 ~--k~~~~~~LPkGi~~~Tl~~i~~~~~ 168 (224)
T COG4565 143 S--KEQPPDDLPKGLDELTLQKVREALK 168 (224)
T ss_pred c--cccCcccCCCCcCHHHHHHHHHHHh
Confidence 2 2567789999999999999999998
No 25
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=26.72 E-value=1e+02 Score=32.55 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHhhhcc-----------cchHHHHHHHHHHHHHHHH
Q 010875 276 HSVPEKIKLMGQVLSKAREQL-----------YDCKLVTGKLRAMLQTADE 315 (498)
Q Consensus 276 ~~a~~kik~M~~~l~kAK~~~-----------yDc~~~~~KLRamL~~~Ee 315 (498)
++|.+-||.+.++|.-+|+.. .|...=-+||-..|++||=
T Consensus 120 KEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMEl 170 (305)
T PF15290_consen 120 KEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMEL 170 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHH
Confidence 345677888888888777544 3555556679999998884
No 26
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.22 E-value=4.2e+02 Score=28.96 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=64.3
Q ss_pred HHhHHHHHHHHhhhhhhccCCCchHHHHH-----------HHHHHHHHHHhcccccCc-CCCCCHHHHHHHHHHHHHHhh
Q 010875 226 RLMRDQMIMARVYLSIAKMKNKPDLQQEL-----------QSRLKESQRALGDTAADA-DLHHSVPEKIKLMGQVLSKAR 293 (498)
Q Consensus 226 r~lkDQli~AkaY~~IAk~~~n~~L~~EL-----------~~~IrE~qr~LseA~~D~-dLp~~a~~kik~M~~~l~kAK 293 (498)
.+|+.||+-++- .|+|.+|..+=..+| +.+++++.+-.+|-.-.+ .|.++..+.++--..+...-+
T Consensus 109 qkL~nqL~~~~~--vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQ 186 (401)
T PF06785_consen 109 QKLKNQLFHVRE--VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQ 186 (401)
T ss_pred HHHHHHHHHHHH--HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999998 888888875433333 333444444444444333 255555555555555555555
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhh
Q 010875 294 EQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAA 332 (498)
Q Consensus 294 ~~~yDc~~~~~KLRamL~~~Eeq~~~~kkQsafl~qLAA 332 (498)
.-...-.+|+.|=.+-|-.+|.+|+-.+-.=.=+-||+.
T Consensus 187 atf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 187 ATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555666777777777777777777776555555555543
No 27
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.62 E-value=8e+02 Score=24.71 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=47.8
Q ss_pred hhhhhccCCCchHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 010875 238 YLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQV 317 (498)
Q Consensus 238 Y~~IAk~~~n~~L~~EL~~~IrE~qr~LseA~~D~dLp~~a~~kik~M~~~l~kAK~~~yDc~~~~~KLRamL~~~Eeq~ 317 (498)
|+-.|-..||+.|+++.-.+++.++-.+..- ..-+...+..+.+.+...-...+.+..+++-...+.-..
T Consensus 74 ~A~~Al~~g~E~LAr~al~~~~~le~~~~~~----------~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 74 KAELALQAGNEDLAREALEEKQSLEDLAKAL----------EAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888999999999999988888876554321 111222233333333323333444555555555555555
Q ss_pred HHHHHhhHHhHhhhh
Q 010875 318 RSLKKQSTFLSQLAA 332 (498)
Q Consensus 318 ~~~kkQsafl~qLAA 332 (498)
..++-|......++.
T Consensus 144 ~~akA~~~v~~~~~~ 158 (225)
T COG1842 144 AAAKAQEKVNRSLGG 158 (225)
T ss_pred HHHHHHHHHHHHhcC
Confidence 555555555555444
No 28
>PRK10404 hypothetical protein; Provisional
Probab=22.39 E-value=3.4e+02 Score=24.13 Aligned_cols=79 Identities=11% Similarity=0.080 Sum_probs=52.2
Q ss_pred cCCCchHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhhcccchHH-HHHHHHHHHHHHHHHHHHHHH
Q 010875 244 MKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKL-VTGKLRAMLQTADEQVRSLKK 322 (498)
Q Consensus 244 ~~~n~~L~~EL~~~IrE~qr~LseA~~D~dLp~~a~~kik~M~~~l~kAK~~~yDc~~-~~~KLRamL~~~Eeq~~~~kk 322 (498)
..+..+|..||+.=+.+++.+|.++..++ -..+.+.=...+..|..+|+..-|... +..+.|++...+++-++.+--
T Consensus 4 ~~~~~~l~~dl~~L~~dle~Ll~~~~~~a--~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw 81 (101)
T PRK10404 4 QFGDTRIDDDLTLLSETLEEVLRSSGDPA--DQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPW 81 (101)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 44567889999999999999998876443 122222333344455555544444444 345679999999999988766
Q ss_pred hh
Q 010875 323 QS 324 (498)
Q Consensus 323 Qs 324 (498)
|+
T Consensus 82 ~a 83 (101)
T PRK10404 82 QG 83 (101)
T ss_pred HH
Confidence 54
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.15 E-value=2.3e+02 Score=30.70 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhh
Q 010875 281 KIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAA 332 (498)
Q Consensus 281 kik~M~~~l~kAK~~~yDc~~~~~KLRamL~~~Eeq~~~~kkQsafl~qLAA 332 (498)
.|...-.+++.-|+.+-+...-.+||++|.+.+|+|+....++...|.-=-.
T Consensus 226 eme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 226 EMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVR 277 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444444455555555677777889999999999999998888887765433
No 30
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=21.08 E-value=84 Score=28.69 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcccccCcCCCCCH----HHHHHHHHHHHHHhhh
Q 010875 253 ELQSRLKESQRALGDTAADADLHHSV----PEKIKLMGQVLSKARE 294 (498)
Q Consensus 253 EL~~~IrE~qr~LseA~~D~dLp~~a----~~kik~M~~~l~kAK~ 294 (498)
+|+.+||+++|+|..- +||+.+ +..+++++.-+..+..
T Consensus 1 klK~riRdieRLL~r~----~Lp~~vR~~~Er~L~~L~~~l~~~~~ 42 (114)
T PF10153_consen 1 KLKKRIRDIERLLKRK----DLPADVRVEKERELEALKRELEEAER 42 (114)
T ss_pred CHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999766 566554 4467777776666543
No 31
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=20.46 E-value=8.9e+02 Score=24.90 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=23.9
Q ss_pred CCchhHHHHhHHHHHHHHhhhhhhccCCC
Q 010875 219 DNSDSTVRLMRDQMIMARVYLSIAKMKNK 247 (498)
Q Consensus 219 ~~~Ds~vr~lkDQli~AkaY~~IAk~~~n 247 (498)
+.++.....+++++---|.|+.-|...+.
T Consensus 122 ~~S~~~~~~l~~~~~k~~~~L~~A~~sD~ 150 (342)
T cd08915 122 PSSDEAAKELYEKVTKLRGYLEQASNSDN 150 (342)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 35677888999999999999998887665
No 32
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=20.13 E-value=4e+02 Score=25.24 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=48.4
Q ss_pred HHHHHHHHh----hhhhhccCCCchHHHHHHHHHHHHHHHhcccccCc---CCCCCHHHHHHHHHHHHHHhhhcccchHH
Q 010875 229 RDQMIMARV----YLSIAKMKNKPDLQQELQSRLKESQRALGDTAADA---DLHHSVPEKIKLMGQVLSKAREQLYDCKL 301 (498)
Q Consensus 229 kDQli~Aka----Y~~IAk~~~n~~L~~EL~~~IrE~qr~LseA~~D~---dLp~~a~~kik~M~~~l~kAK~~~yDc~~ 301 (498)
|.|.++|-- |++.-- ..=.||.+.+||||--.=--.+.-+ .+....++-||.|+.-|... -.-
T Consensus 29 kkQtllaLLiLvLYlgtgi----sG~sWEvserireCN~~QN~v~sqg~EyQt~epseEPik~~r~WLken------Lhv 98 (135)
T PF15466_consen 29 KKQTLLALLILVLYLGTGI----SGRSWEVSERIRECNYYQNPVASQGFEYQTKEPSEEPIKAIRNWLKEN------LHV 98 (135)
T ss_pred HHHHHHHHHHHHHHHhccc----CCCchhHHhhhhhcCCcCCcccccccccccCCCccchHHHHHHHHHHH------HHH
Confidence 456666654 554433 4445999999999954433333222 25555667789988888542 334
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010875 302 VTGKLRAMLQTADEQVRS 319 (498)
Q Consensus 302 ~~~KLRamL~~~Eeq~~~ 319 (498)
+--||..-++.+|+.++-
T Consensus 99 flEkLE~EvreLEQlV~D 116 (135)
T PF15466_consen 99 FLEKLEKEVRELEQLVRD 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555665555555555543
Done!