Query 010875
Match_columns 498
No_of_seqs 132 out of 181
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 16:06:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g9r_A Glycosyl transferase; a 95.7 0.0081 2.8E-07 58.0 4.5 58 373-435 2-65 (311)
2 3tzt_A Glycosyl transferase fa 93.1 0.037 1.3E-06 53.1 2.3 61 372-436 6-71 (276)
3 3v1a_A Computational design, M 63.4 9.8 0.00033 29.1 4.5 39 227-265 5-43 (48)
4 1yzm_A FYVE-finger-containing 59.9 12 0.00041 28.9 4.5 39 227-265 6-44 (51)
5 1z0k_B FYVE-finger-containing 58.8 12 0.0004 30.5 4.5 40 226-265 23-62 (69)
6 1z0j_B FYVE-finger-containing 56.0 15 0.0005 29.2 4.5 40 227-266 13-52 (59)
7 2lk9_A Bone marrow stromal ant 32.5 22 0.00074 25.7 1.9 20 24-43 12-31 (35)
8 4e61_A Protein BIM1; EB1-like 22.0 1.2E+02 0.004 26.5 4.9 60 253-315 22-101 (106)
9 2b5u_A Colicin E3; high resolu 19.8 6E+02 0.021 27.6 10.7 21 156-176 290-310 (551)
10 1dip_A Delta-sleep-inducing pe 15.3 1.8E+02 0.0061 24.2 4.3 40 304-346 18-57 (78)
No 1
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=95.68 E-value=0.0081 Score=58.05 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=41.8
Q ss_pred eEEEEecc--eeeeehhhhhh-hhcccCCCCeEEEEecCccc---hHHHHHHHhcCCCCCceEEEeeec
Q 010875 373 HYALFSDN--VLAASVVVNST-IMNAKDSSKHVFHLVTDKLN---FGAMNMWFLLNPPGKAAIHVENVD 435 (498)
Q Consensus 373 HYaIFSDN--VLAASVVVNST-V~nAkeP~k~VFHVVTDk~N---y~AMk~WF~~Np~~~AtVeV~nIe 435 (498)
|.|+.+|+ +-.+.|.++|. +.|+ +..++|||+||..+ ...++.++.. + +..|++..++
T Consensus 2 ~I~~~~d~~Y~~~~~vli~Sl~l~~~--~~~~~f~il~~~ls~~~~~~L~~~~~~--~-~~~i~~~~~~ 65 (311)
T 1g9r_A 2 DIVFAADDNYAAYLCVAAKSVEAAHP--DTEIRFHVLDAGISEANRAAVAANLRG--G-GGNIRFIDVN 65 (311)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHTCT--TSCCEEEEEESSCCHHHHHHHHHHSGG--G-TTTEEEEECC
T ss_pred eEEEECCHhHHHHHHHHHHHHHHHcC--CCCceEEEEECCCCHHHHHHHHHHHHH--c-CCEEEEEEcC
Confidence 67777776 67789999999 8886 56799999999865 4456666542 2 4566666554
No 2
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=93.07 E-value=0.037 Score=53.05 Aligned_cols=61 Identities=10% Similarity=0.043 Sum_probs=45.8
Q ss_pred ceEEEEecc--eeeeehhhhhhhhcccCCCCeEEEEecCccc---hHHHHHHHhcCCCCCceEEEeeecc
Q 010875 372 YHYALFSDN--VLAASVVVNSTIMNAKDSSKHVFHLVTDKLN---FGAMNMWFLLNPPGKAAIHVENVDE 436 (498)
Q Consensus 372 yHYaIFSDN--VLAASVVVNSTV~nAkeP~k~VFHVVTDk~N---y~AMk~WF~~Np~~~AtVeV~nIed 436 (498)
-|.|+.+|+ +-.+.|.+.|.+.|..+ ..++|||+||... ...++.++.. .+..|++-.+++
T Consensus 6 i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~---~~~~i~~~~~~~ 71 (276)
T 3tzt_A 6 DALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKK---FSYTLYPIRATD 71 (276)
T ss_dssp EEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHT---TTCEEEEEECC-
T ss_pred EEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHH---cCCEEEEEEeCH
Confidence 577888776 67789999999999775 7899999999765 4566777653 246777766654
No 3
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=63.41 E-value=9.8 Score=29.08 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=35.5
Q ss_pred HhHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHh
Q 010875 227 LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRAL 265 (498)
Q Consensus 227 ~lkDQli~AkaY~~IAk~~~n~~L~~EL~~~IrE~qr~L 265 (498)
=|.+|+++-+.|+.-|+..+...=+.-|..+++|+++-+
T Consensus 5 PL~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 5 PLAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999987654
No 4
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=59.89 E-value=12 Score=28.89 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=35.3
Q ss_pred HhHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHh
Q 010875 227 LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRAL 265 (498)
Q Consensus 227 ~lkDQli~AkaY~~IAk~~~n~~L~~EL~~~IrE~qr~L 265 (498)
=|.+|+++-+.|+--||..+..+=+.-|..+++|++.-+
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei 44 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEY 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999987654
No 5
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=58.83 E-value=12 Score=30.55 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=36.5
Q ss_pred HHhHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHh
Q 010875 226 RLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRAL 265 (498)
Q Consensus 226 r~lkDQli~AkaY~~IAk~~~n~~L~~EL~~~IrE~qr~L 265 (498)
.=|.+|+++-+.|+--||..+..+=+.-|..+++|+++-+
T Consensus 23 dPL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei 62 (69)
T 1z0k_B 23 DPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEY 62 (69)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999988755
No 6
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=56.02 E-value=15 Score=29.24 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=36.1
Q ss_pred HhHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhc
Q 010875 227 LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALG 266 (498)
Q Consensus 227 ~lkDQli~AkaY~~IAk~~~n~~L~~EL~~~IrE~qr~Ls 266 (498)
-|.+|+++-+.|+--||..+..+=+.-|..+++|++.-+.
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~ 52 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLA 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999876553
No 7
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=32.54 E-value=22 Score=25.66 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=12.8
Q ss_pred hhhHHHHHHhhhhhhhhccc
Q 010875 24 IVLVIFFSVLAPLIFFVGRG 43 (498)
Q Consensus 24 ~~~~~~~~~~~p~~~~~~~~ 43 (498)
+++++.+.+..|||+|+-|.
T Consensus 12 l~LLviV~LgV~LI~f~~kA 31 (35)
T 2lk9_A 12 LVLLIIVILGVPLIIFTIKK 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcchheEEeeec
Confidence 34555667889999998775
No 8
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.02 E-value=1.2e+02 Score=26.52 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHHHHHHhhhc--------------------ccchHHHHHHHHHHHHH
Q 010875 253 ELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQ--------------------LYDCKLVTGKLRAMLQT 312 (498)
Q Consensus 253 EL~~~IrE~qr~LseA~~D~dLp~~a~~kik~M~~~l~kAK~~--------------------~yDc~~~~~KLRamL~~ 312 (498)
+|.++|.++...+.......| +-..|++..+.++-.+.+. .-+-..+++|+.++|.+
T Consensus 22 ~L~~ei~eLk~~ve~lEkERD---FYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ILYa 98 (106)
T 4e61_A 22 SLNEEIEQYKGTVSTLEIERE---FYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYA 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHHhc
Confidence 555555555544444332221 3456888888888777652 11234678999999999
Q ss_pred HHH
Q 010875 313 ADE 315 (498)
Q Consensus 313 ~Ee 315 (498)
|||
T Consensus 99 Tee 101 (106)
T 4e61_A 99 TAE 101 (106)
T ss_dssp HHH
T ss_pred ccc
Confidence 997
No 9
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=19.82 E-value=6e+02 Score=27.60 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 010875 156 VDTPAKQFRRQLRERRREKRA 176 (498)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~r~ 176 (498)
..+|..+++|+..|+|+++-.
T Consensus 290 ilt~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 290 VLSPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 567999999999999987643
No 10
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=15.34 E-value=1.8e+02 Score=24.21 Aligned_cols=40 Identities=25% Similarity=0.413 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHhhhhccCCCcccccchhh
Q 010875 304 GKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRL 346 (498)
Q Consensus 304 ~KLRamL~~~Eeq~~~~kkQsafl~qLAA~tiPKsLHCLsMRL 346 (498)
--||..|.-++++.........+|.++|+ |..|--|..||
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~as---pEql~q~q~~l 57 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLAS---PEQLEKFQSRL 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS---SSCSCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHhcc
Confidence 35899999999999999999999999998 88888888888
Done!