Query 010876
Match_columns 498
No_of_seqs 342 out of 3255
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 6.4E-85 1.4E-89 636.9 39.9 432 48-479 16-482 (519)
2 PTZ00110 helicase; Provisional 100.0 2.9E-81 6.2E-86 644.8 53.7 443 35-477 70-516 (545)
3 KOG0336 ATP-dependent RNA heli 100.0 7.3E-79 1.6E-83 559.8 32.4 431 46-477 165-604 (629)
4 KOG0339 ATP-dependent RNA heli 100.0 6.1E-77 1.3E-81 560.4 36.8 428 45-473 175-603 (731)
5 PLN00206 DEAD-box ATP-dependen 100.0 1.3E-70 2.8E-75 564.4 48.0 426 45-472 72-502 (518)
6 KOG0333 U5 snRNP-like RNA heli 100.0 1.4E-71 3E-76 526.7 33.5 410 63-474 215-654 (673)
7 KOG0341 DEAD-box protein abstr 100.0 1.2E-72 2.5E-77 515.5 23.1 416 57-475 134-559 (610)
8 KOG0330 ATP-dependent RNA heli 100.0 2.3E-71 5E-76 508.1 31.2 370 90-466 58-430 (476)
9 KOG0335 ATP-dependent RNA heli 100.0 1.5E-69 3.3E-74 519.8 35.5 408 69-477 48-476 (482)
10 KOG0334 RNA helicase [RNA proc 100.0 1E-69 2.3E-74 555.4 32.0 430 45-475 316-750 (997)
11 COG0513 SrmB Superfamily II DN 100.0 1.6E-66 3.4E-71 530.3 41.7 372 93-468 29-407 (513)
12 PRK10590 ATP-dependent RNA hel 100.0 6.6E-66 1.4E-70 523.6 44.5 365 94-460 2-367 (456)
13 KOG0328 Predicted ATP-dependen 100.0 2.3E-66 5.1E-71 455.8 30.4 379 86-471 20-399 (400)
14 PRK04537 ATP-dependent RNA hel 100.0 2E-63 4.2E-68 514.0 44.9 366 93-460 9-379 (572)
15 KOG0338 ATP-dependent RNA heli 100.0 3.5E-65 7.7E-70 481.4 27.3 362 92-457 180-545 (691)
16 PRK04837 ATP-dependent RNA hel 100.0 4.8E-63 1E-67 499.6 43.6 367 92-460 7-377 (423)
17 KOG0326 ATP-dependent RNA heli 100.0 2E-64 4.3E-69 450.8 18.8 369 92-468 84-452 (459)
18 KOG0340 ATP-dependent RNA heli 100.0 6E-63 1.3E-67 447.6 28.6 367 92-463 6-379 (442)
19 PRK11776 ATP-dependent RNA hel 100.0 1.5E-61 3.3E-66 493.9 41.9 359 93-459 4-363 (460)
20 PRK11634 ATP-dependent RNA hel 100.0 2.2E-61 4.7E-66 501.2 41.7 358 92-456 5-363 (629)
21 KOG0342 ATP-dependent RNA heli 100.0 2.4E-62 5.3E-67 461.9 31.0 363 91-454 80-446 (543)
22 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-61 3.7E-66 460.4 31.7 361 90-453 66-431 (758)
23 PRK11192 ATP-dependent RNA hel 100.0 4.7E-60 1E-64 480.1 43.5 364 94-460 2-367 (434)
24 PRK01297 ATP-dependent RNA hel 100.0 4.1E-59 8.9E-64 477.1 49.8 378 91-470 85-469 (475)
25 KOG0345 ATP-dependent RNA heli 100.0 5.3E-60 1.2E-64 443.0 34.9 354 93-447 4-366 (567)
26 KOG0346 RNA helicase [RNA proc 100.0 1.1E-59 2.4E-64 437.1 28.2 368 93-460 19-425 (569)
27 PTZ00424 helicase 45; Provisio 100.0 1.3E-57 2.7E-62 459.2 41.1 368 92-466 27-395 (401)
28 KOG0348 ATP-dependent RNA heli 100.0 3.4E-58 7.4E-63 436.5 33.1 364 92-455 135-564 (708)
29 KOG0332 ATP-dependent RNA heli 100.0 4.4E-56 9.6E-61 405.3 30.1 370 91-471 88-471 (477)
30 KOG0344 ATP-dependent RNA heli 100.0 3.1E-56 6.7E-61 430.4 28.0 398 75-473 114-523 (593)
31 KOG0347 RNA helicase [RNA proc 100.0 4.1E-56 8.9E-61 423.6 18.1 371 88-461 176-586 (731)
32 KOG0337 ATP-dependent RNA heli 100.0 2E-54 4.4E-59 400.2 20.8 363 92-459 20-382 (529)
33 KOG0327 Translation initiation 100.0 1.2E-53 2.5E-58 393.0 25.0 369 92-469 25-394 (397)
34 TIGR03817 DECH_helic helicase/ 100.0 4.3E-52 9.3E-57 440.1 38.1 344 99-457 20-400 (742)
35 KOG4284 DEAD box protein [Tran 100.0 4.4E-52 9.6E-57 402.3 24.3 355 85-447 17-381 (980)
36 PLN03137 ATP-dependent DNA hel 100.0 1.1E-49 2.5E-54 418.5 40.3 342 94-454 436-796 (1195)
37 KOG0350 DEAD-box ATP-dependent 100.0 9.6E-51 2.1E-55 383.2 26.0 352 103-459 147-554 (620)
38 TIGR00614 recQ_fam ATP-depende 100.0 1E-49 2.3E-54 406.1 35.0 326 110-455 6-343 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 1.1E-47 2.4E-52 401.0 37.5 332 101-454 10-352 (607)
40 PRK02362 ski2-like helicase; P 100.0 9.8E-48 2.1E-52 411.5 35.6 336 94-445 2-397 (737)
41 PRK13767 ATP-dependent helicas 100.0 1.9E-46 4E-51 405.0 38.5 343 100-444 18-397 (876)
42 TIGR01389 recQ ATP-dependent D 100.0 1.2E-46 2.6E-51 394.7 34.9 321 111-454 9-340 (591)
43 PRK00254 ski2-like helicase; P 100.0 3.9E-46 8.4E-51 398.2 35.6 339 94-446 2-389 (720)
44 TIGR00580 mfd transcription-re 100.0 4.4E-44 9.6E-49 382.2 40.1 336 100-460 436-787 (926)
45 PRK01172 ski2-like helicase; P 100.0 5.6E-45 1.2E-49 387.8 31.6 335 94-445 2-378 (674)
46 KOG0329 ATP-dependent RNA heli 100.0 2.3E-46 4.9E-51 325.1 16.1 334 93-467 42-378 (387)
47 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.1E-44 4.6E-49 373.9 33.3 313 111-443 12-389 (844)
48 COG1201 Lhr Lhr-like helicases 100.0 1.8E-44 4E-49 372.3 32.4 338 100-444 8-361 (814)
49 PRK10917 ATP-dependent DNA hel 100.0 7.6E-43 1.6E-47 368.4 39.8 337 102-463 248-607 (681)
50 PRK10689 transcription-repair 100.0 1.3E-42 2.8E-47 378.7 40.7 351 102-477 587-956 (1147)
51 TIGR00643 recG ATP-dependent D 100.0 2.1E-42 4.6E-47 362.8 38.5 359 104-488 225-607 (630)
52 COG0514 RecQ Superfamily II DN 100.0 4.3E-42 9.2E-47 342.7 28.2 326 111-456 13-348 (590)
53 COG1111 MPH1 ERCC4-like helica 100.0 8.5E-41 1.8E-45 318.7 34.2 333 113-455 13-493 (542)
54 PRK09751 putative ATP-dependen 100.0 1.7E-41 3.6E-46 371.5 33.5 302 135-439 1-379 (1490)
55 PHA02653 RNA helicase NPH-II; 100.0 7.7E-41 1.7E-45 345.9 33.4 310 118-447 167-516 (675)
56 PHA02558 uvsW UvsW helicase; P 100.0 2.8E-40 6.1E-45 338.5 31.7 345 68-437 65-444 (501)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 7.6E-40 1.6E-44 346.4 33.6 304 119-447 6-338 (819)
58 COG1202 Superfamily II helicas 100.0 7.2E-41 1.6E-45 321.2 21.3 338 93-445 194-553 (830)
59 PRK09401 reverse gyrase; Revie 100.0 2.3E-39 5.1E-44 354.0 35.6 302 107-432 72-431 (1176)
60 COG1204 Superfamily II helicas 100.0 4.4E-40 9.6E-45 344.7 27.9 335 98-444 14-407 (766)
61 PRK12898 secA preprotein trans 100.0 4.3E-39 9.3E-44 327.6 31.1 316 115-447 103-588 (656)
62 PRK11664 ATP-dependent RNA hel 100.0 4.3E-39 9.3E-44 341.6 31.5 304 119-447 9-341 (812)
63 PRK14701 reverse gyrase; Provi 100.0 5.1E-39 1.1E-43 358.2 32.4 326 103-450 67-461 (1638)
64 TIGR01587 cas3_core CRISPR-ass 100.0 5.7E-39 1.2E-43 318.2 28.3 299 132-445 1-336 (358)
65 TIGR01054 rgy reverse gyrase. 100.0 1.8E-37 3.8E-42 339.8 34.2 292 103-417 66-409 (1171)
66 PRK09200 preprotein translocas 100.0 2.3E-37 4.9E-42 321.6 31.1 319 112-447 76-543 (790)
67 KOG0349 Putative DEAD-box RNA 100.0 1E-38 2.2E-43 296.7 18.2 309 167-477 287-679 (725)
68 PRK13766 Hef nuclease; Provisi 100.0 2E-36 4.4E-41 328.2 38.4 323 113-445 13-479 (773)
69 KOG0354 DEAD-box like helicase 100.0 6.5E-37 1.4E-41 308.9 30.2 333 100-444 47-528 (746)
70 TIGR03714 secA2 accessory Sec 100.0 7.6E-37 1.6E-41 314.6 31.3 319 115-447 68-539 (762)
71 KOG0952 DNA/RNA helicase MER3/ 100.0 1.3E-37 2.8E-42 317.2 25.2 383 63-455 58-501 (1230)
72 TIGR00963 secA preprotein tran 100.0 4.1E-36 8.8E-41 307.3 32.0 316 115-447 56-519 (745)
73 TIGR00603 rad25 DNA repair hel 100.0 6.6E-36 1.4E-40 307.8 30.4 322 114-462 254-626 (732)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-35 2.4E-40 291.6 30.2 291 119-430 1-357 (357)
75 COG1205 Distinct helicase fami 100.0 1.5E-35 3.3E-40 315.0 31.9 334 100-443 55-420 (851)
76 KOG0351 ATP-dependent DNA heli 100.0 6.8E-36 1.5E-40 315.1 26.7 330 109-455 258-602 (941)
77 PRK11131 ATP-dependent RNA hel 100.0 1.3E-34 2.8E-39 312.3 29.9 302 117-447 76-413 (1294)
78 KOG0352 ATP-dependent DNA heli 100.0 2.4E-35 5.2E-40 273.9 20.5 332 104-454 7-371 (641)
79 KOG0353 ATP-dependent DNA heli 100.0 3.3E-34 7.1E-39 262.8 22.1 335 96-447 74-469 (695)
80 KOG0951 RNA helicase BRR2, DEA 100.0 4.5E-34 9.9E-39 294.8 24.1 347 99-454 295-711 (1674)
81 COG1200 RecG RecG-like helicas 100.0 4.5E-32 9.7E-37 270.1 35.5 345 100-467 247-615 (677)
82 PRK04914 ATP-dependent helicas 100.0 1.1E-32 2.3E-37 293.8 32.0 334 115-460 152-618 (956)
83 COG1061 SSL2 DNA or RNA helica 100.0 1.9E-32 4.1E-37 275.2 27.0 294 114-431 35-375 (442)
84 PRK09694 helicase Cas3; Provis 100.0 2E-31 4.4E-36 282.3 36.1 353 113-475 284-727 (878)
85 PRK05580 primosome assembly pr 100.0 6.9E-31 1.5E-35 276.5 37.9 317 114-451 143-555 (679)
86 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.3E-31 2.8E-36 290.2 30.5 302 121-447 73-406 (1283)
87 KOG0947 Cytoplasmic exosomal R 100.0 3.9E-32 8.5E-37 274.3 23.8 309 114-443 296-721 (1248)
88 cd00268 DEADc DEAD-box helicas 100.0 8E-31 1.7E-35 238.8 24.7 202 95-299 1-202 (203)
89 COG1197 Mfd Transcription-repa 100.0 2.4E-29 5.1E-34 264.1 34.3 323 99-445 578-913 (1139)
90 PRK13104 secA preprotein trans 100.0 1.1E-29 2.3E-34 263.7 31.1 316 115-447 82-589 (896)
91 KOG0948 Nuclear exosomal RNA h 100.0 3.4E-31 7.3E-36 261.5 18.0 309 114-445 128-539 (1041)
92 TIGR00595 priA primosomal prot 100.0 6.5E-29 1.4E-33 252.6 31.6 292 134-446 1-382 (505)
93 PRK12904 preprotein translocas 100.0 2.8E-29 6.2E-34 260.4 29.1 316 115-447 81-575 (830)
94 PLN03142 Probable chromatin-re 100.0 9.4E-29 2E-33 264.5 28.6 315 115-442 169-594 (1033)
95 COG4581 Superfamily II RNA hel 100.0 6.2E-29 1.3E-33 260.9 25.9 311 114-444 118-536 (1041)
96 PRK12899 secA preprotein trans 100.0 5.7E-28 1.2E-32 250.4 32.5 181 61-253 31-228 (970)
97 PRK12906 secA preprotein trans 100.0 9.2E-29 2E-33 255.6 26.3 316 115-447 80-555 (796)
98 KOG0950 DNA polymerase theta/e 100.0 1.3E-28 2.8E-33 250.8 25.4 342 100-455 208-621 (1008)
99 PRK11448 hsdR type I restricti 100.0 5.9E-28 1.3E-32 263.2 28.5 308 114-433 412-801 (1123)
100 COG4098 comFA Superfamily II D 100.0 1.4E-26 3.1E-31 210.5 28.7 306 115-449 97-420 (441)
101 PRK13107 preprotein translocas 100.0 1.1E-26 2.4E-31 240.6 26.2 316 115-447 82-593 (908)
102 COG1643 HrpA HrpA-like helicas 100.0 3.9E-26 8.4E-31 238.6 27.1 309 116-446 51-388 (845)
103 KOG0922 DEAH-box RNA helicase 99.9 3E-26 6.5E-31 226.3 24.4 305 116-447 52-392 (674)
104 PF00270 DEAD: DEAD/DEAH box h 99.9 2E-26 4.4E-31 203.4 19.3 165 117-287 1-168 (169)
105 KOG0385 Chromatin remodeling c 99.9 9.8E-26 2.1E-30 224.0 24.7 314 115-445 167-597 (971)
106 COG1203 CRISPR-associated heli 99.9 2.5E-25 5.4E-30 236.7 25.9 324 115-447 195-552 (733)
107 KOG0920 ATP-dependent RNA heli 99.9 1.1E-24 2.5E-29 226.6 26.1 317 115-446 173-545 (924)
108 KOG0384 Chromodomain-helicase 99.9 2.5E-25 5.4E-30 231.1 15.2 380 45-445 304-811 (1373)
109 KOG0387 Transcription-coupled 99.9 4.8E-24 1E-28 213.0 23.7 328 115-455 205-671 (923)
110 KOG0923 mRNA splicing factor A 99.9 5E-24 1.1E-28 208.6 22.5 308 112-444 262-605 (902)
111 COG1110 Reverse gyrase [DNA re 99.9 1.1E-22 2.3E-27 208.9 27.6 289 104-417 71-417 (1187)
112 TIGR00631 uvrb excinuclease AB 99.9 3.2E-22 7E-27 208.4 31.9 135 321-456 424-564 (655)
113 KOG0924 mRNA splicing factor A 99.9 5.5E-23 1.2E-27 201.8 22.6 305 117-445 358-697 (1042)
114 PRK12900 secA preprotein trans 99.9 5.7E-23 1.2E-27 214.0 23.0 142 319-462 578-732 (1025)
115 COG0556 UvrB Helicase subunit 99.9 4.5E-22 9.8E-27 191.3 26.1 168 271-447 386-559 (663)
116 TIGR00348 hsdR type I site-spe 99.9 3.6E-22 7.8E-27 210.5 27.4 300 115-432 238-634 (667)
117 COG1198 PriA Primosomal protei 99.9 1.1E-21 2.4E-26 202.4 29.8 321 114-454 197-612 (730)
118 COG4096 HsdR Type I site-speci 99.9 1E-22 2.3E-27 206.0 20.3 295 115-432 165-525 (875)
119 KOG0390 DNA repair protein, SN 99.9 2.3E-21 5E-26 198.9 27.1 322 115-443 238-703 (776)
120 PRK05298 excinuclease ABC subu 99.9 7.4E-21 1.6E-25 199.8 31.1 147 322-469 429-590 (652)
121 TIGR01407 dinG_rel DnaQ family 99.9 1.2E-20 2.7E-25 205.1 33.3 346 101-459 232-830 (850)
122 PRK12326 preprotein translocas 99.9 7.8E-21 1.7E-25 192.9 28.4 314 115-446 78-548 (764)
123 KOG0392 SNF2 family DNA-depend 99.9 1.9E-21 4.1E-26 201.8 23.9 323 115-445 975-1454(1549)
124 KOG0389 SNF2 family DNA-depend 99.9 1.4E-21 3.1E-26 195.3 21.4 319 115-445 399-888 (941)
125 KOG0926 DEAH-box RNA helicase 99.9 6E-21 1.3E-25 190.6 22.9 302 122-445 263-704 (1172)
126 KOG0925 mRNA splicing factor A 99.9 2.2E-21 4.8E-26 184.1 18.9 322 92-445 24-387 (699)
127 KOG0949 Predicted helicase, DE 99.9 8.6E-22 1.9E-26 200.3 15.4 158 115-282 511-672 (1330)
128 smart00487 DEXDc DEAD-like hel 99.9 1.9E-20 4.1E-25 169.5 21.5 186 111-302 4-191 (201)
129 PRK13103 secA preprotein trans 99.9 3.5E-20 7.6E-25 192.7 25.8 315 115-447 82-593 (913)
130 KOG1123 RNA polymerase II tran 99.9 4.9E-21 1.1E-25 182.3 16.1 311 114-450 301-658 (776)
131 KOG1000 Chromatin remodeling p 99.9 4.2E-20 9.2E-25 175.8 21.5 313 114-443 197-599 (689)
132 PRK12903 secA preprotein trans 99.8 6.5E-19 1.4E-23 181.5 26.4 315 115-447 78-541 (925)
133 PRK07246 bifunctional ATP-depe 99.8 1.9E-17 4E-22 177.9 31.2 330 114-459 244-799 (820)
134 CHL00122 secA preprotein trans 99.8 7.8E-18 1.7E-22 174.6 24.8 274 115-405 76-491 (870)
135 KOG0386 Chromatin remodeling c 99.8 2.3E-19 5E-24 183.8 13.3 323 115-453 394-844 (1157)
136 cd00079 HELICc Helicase superf 99.8 1.2E-18 2.6E-23 146.6 14.1 119 323-441 12-131 (131)
137 COG4889 Predicted helicase [Ge 99.8 7.8E-19 1.7E-23 177.0 14.5 349 103-462 149-618 (1518)
138 KOG4150 Predicted ATP-dependen 99.8 9.5E-18 2.1E-22 162.2 18.7 326 108-442 279-637 (1034)
139 TIGR03117 cas_csf4 CRISPR-asso 99.8 8.9E-16 1.9E-20 157.9 33.5 120 337-458 469-630 (636)
140 PRK12902 secA preprotein trans 99.8 2E-16 4.3E-21 163.9 27.7 274 115-405 85-506 (939)
141 KOG0391 SNF2 family DNA-depend 99.8 4.7E-17 1E-21 168.1 22.2 132 322-453 1259-1393(1958)
142 PRK08074 bifunctional ATP-depe 99.8 1E-15 2.2E-20 167.5 32.7 135 325-459 737-909 (928)
143 KOG0388 SNF2 family DNA-depend 99.8 2E-17 4.3E-22 163.5 17.3 148 321-473 1026-1175(1185)
144 PF00271 Helicase_C: Helicase 99.8 3.7E-18 7.9E-23 129.5 8.8 78 356-433 1-78 (78)
145 KOG0953 Mitochondrial RNA heli 99.7 3E-17 6.6E-22 158.7 16.6 266 132-445 193-477 (700)
146 KOG1002 Nucleotide excision re 99.7 1.6E-16 3.5E-21 151.5 21.1 141 322-464 619-766 (791)
147 cd00046 DEXDc DEAD-like helica 99.7 1E-16 2.2E-21 136.5 16.7 144 131-281 1-144 (144)
148 KOG0951 RNA helicase BRR2, DEA 99.7 2.6E-16 5.6E-21 164.5 19.2 315 115-454 1143-1503(1674)
149 PF04851 ResIII: Type III rest 99.7 8.5E-17 1.9E-21 143.8 12.7 152 115-282 3-183 (184)
150 KOG4439 RNA polymerase II tran 99.7 8.3E-16 1.8E-20 152.4 17.8 121 321-441 727-852 (901)
151 PRK12901 secA preprotein trans 99.6 1.2E-14 2.6E-19 152.4 20.3 127 319-447 608-743 (1112)
152 TIGR02562 cas3_yersinia CRISPR 99.6 3.4E-14 7.5E-19 149.7 23.1 312 114-435 407-882 (1110)
153 PRK11747 dinG ATP-dependent DN 99.6 1E-12 2.2E-17 139.6 32.6 129 325-457 520-688 (697)
154 COG0553 HepA Superfamily II DN 99.6 1.3E-13 2.8E-18 153.2 26.8 337 114-459 337-834 (866)
155 smart00490 HELICc helicase sup 99.6 2.3E-15 5E-20 115.3 8.8 81 353-433 2-82 (82)
156 PRK14873 primosome assembly pr 99.6 2.2E-13 4.9E-18 142.1 25.5 278 136-445 166-539 (665)
157 COG1199 DinG Rad3-related DNA 99.6 2.1E-13 4.5E-18 145.9 26.1 119 338-459 479-633 (654)
158 TIGR00604 rad3 DNA repair heli 99.6 9.7E-13 2.1E-17 140.9 30.0 73 112-189 7-83 (705)
159 PF02399 Herpes_ori_bp: Origin 99.6 2.5E-13 5.5E-18 139.8 23.3 289 132-445 51-388 (824)
160 PF06862 DUF1253: Protein of u 99.6 8.5E-12 1.8E-16 122.4 29.6 291 165-456 36-426 (442)
161 KOG1015 Transcription regulato 99.5 2.2E-13 4.8E-18 139.0 17.1 122 322-443 1125-1273(1567)
162 PF00176 SNF2_N: SNF2 family N 99.4 4E-12 8.8E-17 122.9 14.4 156 119-281 1-172 (299)
163 COG0610 Type I site-specific r 99.4 5.2E-11 1.1E-15 130.0 23.4 286 131-432 274-636 (962)
164 COG0653 SecA Preprotein transl 99.4 4.7E-11 1E-15 124.1 19.7 316 115-446 78-546 (822)
165 PF07652 Flavi_DEAD: Flaviviru 99.3 2.9E-12 6.2E-17 105.0 7.5 136 130-286 4-141 (148)
166 KOG0921 Dosage compensation co 99.3 1.6E-11 3.5E-16 125.3 14.1 304 124-443 387-772 (1282)
167 KOG2340 Uncharacterized conser 99.3 9.9E-11 2.1E-15 113.5 18.1 344 113-457 214-680 (698)
168 smart00489 DEXDc3 DEAD-like he 99.2 3.7E-10 8.1E-15 107.5 14.2 73 115-189 8-84 (289)
169 smart00488 DEXDc2 DEAD-like he 99.2 3.7E-10 8.1E-15 107.5 14.2 73 115-189 8-84 (289)
170 PRK15483 type III restriction- 99.2 2.2E-08 4.7E-13 106.9 27.3 73 388-460 501-583 (986)
171 KOG1016 Predicted DNA helicase 99.0 4.3E-08 9.4E-13 99.2 20.7 118 338-455 719-857 (1387)
172 PF07517 SecA_DEAD: SecA DEAD- 99.0 7.8E-09 1.7E-13 95.8 14.2 128 114-253 76-210 (266)
173 KOG0952 DNA/RNA helicase MER3/ 98.8 2.6E-09 5.7E-14 111.6 4.4 260 115-390 927-1207(1230)
174 TIGR00596 rad1 DNA repair prot 98.8 2.2E-07 4.7E-12 99.3 17.8 68 215-282 6-73 (814)
175 KOG1001 Helicase-like transcri 98.8 5.5E-08 1.2E-12 101.5 13.0 101 340-440 541-643 (674)
176 COG3587 Restriction endonuclea 98.7 5E-07 1.1E-11 93.2 14.9 73 387-459 482-567 (985)
177 PF13872 AAA_34: P-loop contai 98.6 1.2E-06 2.5E-11 81.6 14.9 170 97-285 25-224 (303)
178 PF13604 AAA_30: AAA domain; P 98.6 3.2E-07 6.8E-12 82.4 10.1 123 115-280 1-130 (196)
179 PF13086 AAA_11: AAA domain; P 98.6 5E-07 1.1E-11 83.8 11.0 73 115-188 1-75 (236)
180 PF02562 PhoH: PhoH-like prote 98.5 7.6E-07 1.7E-11 79.3 10.5 146 114-280 3-155 (205)
181 PF13307 Helicase_C_2: Helicas 98.5 5.5E-07 1.2E-11 78.6 8.0 106 338-445 9-150 (167)
182 PF12340 DUF3638: Protein of u 98.4 4.3E-06 9.3E-11 75.1 12.5 151 94-254 4-186 (229)
183 TIGR00376 DNA helicase, putati 98.4 0.00011 2.5E-09 77.7 23.7 68 114-189 156-224 (637)
184 KOG1802 RNA helicase nonsense 98.2 3.6E-05 7.8E-10 77.6 15.2 84 107-201 402-485 (935)
185 PF09848 DUF2075: Uncharacteri 98.2 0.0001 2.2E-09 72.8 17.6 108 132-267 3-117 (352)
186 TIGR01447 recD exodeoxyribonuc 98.2 2.8E-05 6.1E-10 81.1 13.9 143 117-280 147-295 (586)
187 PRK10875 recD exonuclease V su 98.2 2.7E-05 5.8E-10 81.4 13.5 143 116-280 153-301 (615)
188 PRK10536 hypothetical protein; 98.1 0.0001 2.2E-09 67.7 14.9 142 111-277 55-209 (262)
189 TIGR01448 recD_rel helicase, p 98.1 4.1E-05 8.8E-10 82.2 14.2 127 113-280 321-452 (720)
190 KOG1132 Helicase of the DEAD s 98.0 3.3E-05 7.2E-10 80.5 11.1 137 114-253 20-260 (945)
191 KOG1803 DNA helicase [Replicat 98.0 1.3E-05 2.9E-10 80.2 7.7 65 115-187 185-250 (649)
192 PF13245 AAA_19: Part of AAA d 97.9 5.7E-05 1.2E-09 56.1 7.5 60 123-186 2-62 (76)
193 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00028 6E-09 76.2 14.7 122 114-278 351-474 (744)
194 PRK13889 conjugal transfer rel 97.8 0.00035 7.6E-09 76.7 15.0 124 114-280 345-470 (988)
195 KOG1805 DNA replication helica 97.7 0.00019 4.1E-09 75.7 10.7 139 96-254 654-810 (1100)
196 PRK04296 thymidine kinase; Pro 97.7 0.00015 3.2E-09 64.8 7.4 36 131-174 3-38 (190)
197 COG3421 Uncharacterized protei 97.6 0.00048 1E-08 69.1 11.0 138 135-283 2-167 (812)
198 PRK13826 Dtr system oriT relax 97.6 0.0013 2.9E-08 72.7 15.3 124 114-280 380-505 (1102)
199 PRK08181 transposase; Validate 97.6 0.0014 3E-08 61.6 12.7 122 116-286 88-214 (269)
200 COG1875 NYN ribonuclease and A 97.5 0.00096 2.1E-08 63.4 11.3 146 111-278 224-385 (436)
201 TIGR02760 TraI_TIGR conjugativ 97.5 0.0078 1.7E-07 71.6 21.1 236 115-387 429-685 (1960)
202 smart00492 HELICc3 helicase su 97.5 0.00074 1.6E-08 56.8 9.4 77 367-443 26-136 (141)
203 PRK06526 transposase; Provisio 97.5 0.00029 6.3E-09 65.7 7.6 112 125-285 93-205 (254)
204 KOG0383 Predicted helicase [Ge 97.5 1E-05 2.3E-10 83.8 -2.4 79 322-401 614-696 (696)
205 PRK12723 flagellar biosynthesi 97.5 0.0025 5.4E-08 63.0 13.9 130 131-292 175-309 (388)
206 PF13401 AAA_22: AAA domain; P 97.5 0.00059 1.3E-08 56.8 8.1 20 130-149 4-23 (131)
207 smart00491 HELICc2 helicase su 97.4 0.00072 1.6E-08 57.0 8.4 94 351-444 4-138 (142)
208 PF13871 Helicase_C_4: Helicas 97.4 0.00088 1.9E-08 62.4 8.8 82 379-460 52-145 (278)
209 cd00009 AAA The AAA+ (ATPases 97.3 0.0027 5.9E-08 53.5 11.2 18 130-147 19-36 (151)
210 PRK14974 cell division protein 97.3 0.004 8.6E-08 60.4 12.8 130 132-293 142-276 (336)
211 PF00580 UvrD-helicase: UvrD/R 97.3 0.00086 1.9E-08 65.1 7.9 123 116-250 1-125 (315)
212 PRK11889 flhF flagellar biosyn 97.3 0.0095 2.1E-07 58.3 14.6 167 131-347 242-413 (436)
213 PRK07952 DNA replication prote 97.2 0.0091 2E-07 55.2 13.7 109 131-286 100-210 (244)
214 PRK14722 flhF flagellar biosyn 97.2 0.0025 5.3E-08 62.5 10.3 132 130-293 137-270 (374)
215 KOG0298 DEAD box-containing he 97.2 0.0015 3.2E-08 71.1 9.3 152 130-286 374-555 (1394)
216 COG1419 FlhF Flagellar GTP-bin 97.1 0.011 2.4E-07 57.7 13.3 133 130-294 203-337 (407)
217 smart00382 AAA ATPases associa 97.1 0.0013 2.8E-08 55.1 6.4 41 130-178 2-42 (148)
218 KOG0989 Replication factor C, 97.1 0.0035 7.6E-08 58.3 9.1 59 235-294 124-185 (346)
219 PF00448 SRP54: SRP54-type pro 97.1 0.0012 2.5E-08 59.2 5.9 54 239-292 82-136 (196)
220 PRK08116 hypothetical protein; 97.0 0.035 7.5E-07 52.4 15.6 109 132-286 116-226 (268)
221 PF05970 PIF1: PIF1-like helic 97.0 0.0028 6.1E-08 62.8 8.6 60 115-182 1-66 (364)
222 PRK06921 hypothetical protein; 97.0 0.017 3.8E-07 54.3 13.5 45 129-181 116-160 (266)
223 KOG1131 RNA polymerase II tran 97.0 0.0079 1.7E-07 59.7 11.0 73 112-188 13-89 (755)
224 PRK05707 DNA polymerase III su 96.9 0.0054 1.2E-07 59.6 9.6 42 115-157 3-48 (328)
225 PRK05703 flhF flagellar biosyn 96.9 0.049 1.1E-06 54.9 16.7 128 130-292 221-354 (424)
226 PF14617 CMS1: U3-containing 9 96.9 0.0028 6.1E-08 58.4 6.7 87 164-251 124-212 (252)
227 PRK14712 conjugal transfer nic 96.8 0.011 2.5E-07 67.7 12.6 62 115-182 835-900 (1623)
228 cd01124 KaiC KaiC is a circadi 96.8 0.0076 1.6E-07 53.6 9.0 49 133-190 2-50 (187)
229 cd01120 RecA-like_NTPases RecA 96.7 0.018 3.8E-07 49.7 10.8 38 133-178 2-39 (165)
230 KOG1133 Helicase of the DEAD s 96.7 0.1 2.3E-06 53.9 17.2 210 241-477 527-802 (821)
231 PRK08727 hypothetical protein; 96.7 0.015 3.3E-07 53.7 10.5 48 239-286 92-141 (233)
232 PHA02533 17 large terminase pr 96.7 0.014 3E-07 60.5 10.9 149 114-281 58-210 (534)
233 COG2256 MGS1 ATPase related to 96.7 0.0063 1.4E-07 58.8 7.7 18 132-149 50-67 (436)
234 PRK06893 DNA replication initi 96.6 0.0098 2.1E-07 54.8 8.8 45 239-283 90-136 (229)
235 PRK12727 flagellar biosynthesi 96.6 0.21 4.6E-06 51.1 18.8 129 129-292 349-481 (559)
236 PRK06731 flhF flagellar biosyn 96.6 0.053 1.1E-06 51.0 13.6 167 130-347 75-247 (270)
237 PRK05642 DNA replication initi 96.6 0.014 3E-07 54.0 9.8 44 239-282 96-140 (234)
238 PRK13709 conjugal transfer nic 96.6 0.028 6E-07 65.5 13.9 65 114-182 966-1032(1747)
239 PRK12377 putative replication 96.6 0.015 3.1E-07 54.1 9.7 107 130-284 101-209 (248)
240 PRK08769 DNA polymerase III su 96.6 0.016 3.6E-07 55.8 10.2 143 114-280 3-152 (319)
241 PRK08084 DNA replication initi 96.6 0.01 2.2E-07 54.9 8.5 45 240-284 97-144 (235)
242 PRK09183 transposase/IS protei 96.6 0.029 6.4E-07 52.6 11.5 46 127-181 99-144 (259)
243 TIGR01075 uvrD DNA helicase II 96.6 0.015 3.3E-07 63.2 10.9 71 114-190 3-73 (715)
244 COG1484 DnaC DNA replication p 96.6 0.019 4.2E-07 53.6 10.1 106 129-282 104-210 (254)
245 PRK11773 uvrD DNA-dependent he 96.5 0.014 3.1E-07 63.4 10.4 71 114-190 8-78 (721)
246 PRK06835 DNA replication prote 96.5 0.076 1.6E-06 51.6 14.2 111 129-286 182-294 (329)
247 PRK07003 DNA polymerase III su 96.5 0.024 5.2E-07 60.0 11.3 39 239-278 118-156 (830)
248 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.024 5.2E-07 52.1 10.2 21 129-149 37-57 (226)
249 KOG0701 dsRNA-specific nucleas 96.4 0.0034 7.4E-08 71.1 5.0 93 340-432 294-398 (1606)
250 COG2805 PilT Tfp pilus assembl 96.4 0.0099 2.1E-07 55.3 7.1 53 86-158 99-152 (353)
251 PF01695 IstB_IS21: IstB-like 96.4 0.0041 8.9E-08 54.8 4.5 49 125-182 42-90 (178)
252 PRK07764 DNA polymerase III su 96.4 0.031 6.7E-07 60.9 11.9 39 239-278 119-157 (824)
253 PRK14723 flhF flagellar biosyn 96.4 0.047 1E-06 58.4 12.8 131 131-293 186-318 (767)
254 PRK00771 signal recognition pa 96.4 0.032 6.9E-07 56.2 11.1 53 241-293 176-229 (437)
255 PRK00149 dnaA chromosomal repl 96.4 0.062 1.3E-06 55.0 13.4 111 131-288 149-261 (450)
256 PF05496 RuvB_N: Holliday junc 96.4 0.014 3E-07 52.5 7.5 18 132-149 52-69 (233)
257 PRK11054 helD DNA helicase IV; 96.3 0.017 3.8E-07 61.7 9.5 78 114-197 195-272 (684)
258 PRK10917 ATP-dependent DNA hel 96.3 0.019 4.1E-07 61.9 9.8 86 327-412 299-389 (681)
259 PF05127 Helicase_RecD: Helica 96.3 0.0034 7.4E-08 54.6 3.1 123 134-281 1-123 (177)
260 TIGR01074 rep ATP-dependent DN 96.3 0.034 7.4E-07 60.1 11.4 109 116-251 2-112 (664)
261 PRK08903 DnaA regulatory inact 96.2 0.026 5.7E-07 51.9 9.1 43 240-283 90-133 (227)
262 PRK12422 chromosomal replicati 96.2 0.031 6.7E-07 56.8 10.3 112 131-291 142-255 (445)
263 PF00308 Bac_DnaA: Bacterial d 96.2 0.016 3.6E-07 52.9 7.6 107 132-285 36-144 (219)
264 PF03354 Terminase_1: Phage Te 96.2 0.017 3.7E-07 59.6 8.5 149 118-278 1-160 (477)
265 COG3973 Superfamily I DNA and 96.2 0.052 1.1E-06 55.3 11.3 92 98-191 187-285 (747)
266 PF13177 DNA_pol3_delta2: DNA 96.2 0.044 9.5E-07 47.5 9.7 42 239-281 101-142 (162)
267 PRK06645 DNA polymerase III su 96.2 0.026 5.7E-07 58.0 9.5 24 132-156 45-68 (507)
268 TIGR02760 TraI_TIGR conjugativ 96.2 0.035 7.7E-07 66.3 11.7 62 114-182 1018-1084(1960)
269 PRK14956 DNA polymerase III su 96.2 0.022 4.7E-07 57.6 8.6 17 133-149 43-59 (484)
270 PRK11331 5-methylcytosine-spec 96.2 0.017 3.6E-07 57.8 7.6 34 115-148 179-212 (459)
271 PRK07994 DNA polymerase III su 96.2 0.055 1.2E-06 57.1 11.8 38 239-277 118-155 (647)
272 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.067 1.5E-06 45.8 10.1 53 238-290 93-147 (159)
273 PRK14086 dnaA chromosomal repl 96.1 0.025 5.4E-07 58.9 8.8 49 238-286 375-425 (617)
274 TIGR00362 DnaA chromosomal rep 96.1 0.07 1.5E-06 53.8 12.0 109 132-287 138-248 (405)
275 PRK14087 dnaA chromosomal repl 96.1 0.04 8.8E-07 56.1 10.2 109 132-285 143-253 (450)
276 COG1444 Predicted P-loop ATPas 96.0 0.045 9.8E-07 58.0 10.5 148 108-281 207-356 (758)
277 PRK14088 dnaA chromosomal repl 96.0 0.11 2.3E-06 53.0 13.1 51 240-290 194-246 (440)
278 PRK14964 DNA polymerase III su 96.0 0.042 9.1E-07 56.1 9.9 40 238-278 114-153 (491)
279 PRK14958 DNA polymerase III su 96.0 0.035 7.7E-07 57.3 9.5 39 239-278 118-156 (509)
280 PF05621 TniB: Bacterial TniB 96.0 0.032 7E-07 52.6 8.3 52 131-186 62-116 (302)
281 TIGR01547 phage_term_2 phage t 96.0 0.025 5.3E-07 57.0 8.2 136 132-283 3-142 (396)
282 PRK10919 ATP-dependent DNA hel 96.0 0.019 4.2E-07 61.6 7.7 70 115-190 2-71 (672)
283 KOG0741 AAA+-type ATPase [Post 96.0 0.044 9.4E-07 54.9 9.3 58 87-147 210-273 (744)
284 PRK14960 DNA polymerase III su 95.9 0.059 1.3E-06 56.4 10.7 39 239-278 117-155 (702)
285 PHA03333 putative ATPase subun 95.9 0.15 3.3E-06 53.3 13.5 70 115-191 169-241 (752)
286 TIGR01425 SRP54_euk signal rec 95.9 0.16 3.4E-06 50.9 13.3 54 240-293 182-236 (429)
287 PRK08533 flagellar accessory p 95.9 0.082 1.8E-06 48.7 10.7 54 128-190 22-75 (230)
288 TIGR00643 recG ATP-dependent D 95.9 0.032 7E-07 59.6 9.0 85 328-412 274-363 (630)
289 PRK12402 replication factor C 95.9 0.083 1.8E-06 51.8 11.3 39 239-278 124-162 (337)
290 PRK12726 flagellar biosynthesi 95.9 0.17 3.6E-06 49.6 12.8 168 130-347 206-378 (407)
291 PRK14949 DNA polymerase III su 95.9 0.059 1.3E-06 58.3 10.6 38 239-277 118-155 (944)
292 PTZ00293 thymidine kinase; Pro 95.9 0.084 1.8E-06 47.3 10.0 38 130-175 4-41 (211)
293 PF00004 AAA: ATPase family as 95.9 0.074 1.6E-06 43.9 9.4 17 133-149 1-17 (132)
294 PHA02544 44 clamp loader, smal 95.8 0.042 9.1E-07 53.4 8.8 40 240-279 100-139 (316)
295 PTZ00112 origin recognition co 95.8 0.14 3.1E-06 55.1 12.9 23 133-156 784-806 (1164)
296 TIGR01073 pcrA ATP-dependent D 95.8 0.045 9.8E-07 59.7 9.8 71 114-190 3-73 (726)
297 PLN03025 replication factor C 95.8 0.12 2.7E-06 50.2 11.9 38 240-278 99-136 (319)
298 TIGR02881 spore_V_K stage V sp 95.8 0.053 1.1E-06 51.1 9.1 19 131-149 43-61 (261)
299 PRK06964 DNA polymerase III su 95.8 0.076 1.6E-06 51.7 10.3 41 116-157 2-47 (342)
300 COG0470 HolB ATPase involved i 95.8 0.074 1.6E-06 51.8 10.3 40 239-279 108-147 (325)
301 PRK08691 DNA polymerase III su 95.8 0.054 1.2E-06 57.1 9.6 40 238-278 117-156 (709)
302 PRK08699 DNA polymerase III su 95.7 0.081 1.7E-06 51.4 10.1 40 116-156 2-46 (325)
303 PRK13342 recombination factor 95.6 0.092 2E-06 53.1 10.7 18 132-149 38-55 (413)
304 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.071 1.5E-06 49.4 9.0 54 129-191 20-73 (237)
305 PRK05986 cob(I)alamin adenolsy 95.6 0.092 2E-06 46.3 9.1 144 129-290 21-167 (191)
306 PRK12323 DNA polymerase III su 95.6 0.089 1.9E-06 55.0 10.4 40 239-279 123-162 (700)
307 PRK14965 DNA polymerase III su 95.6 0.11 2.4E-06 54.8 11.4 40 238-278 117-156 (576)
308 PRK08939 primosomal protein Dn 95.6 0.18 3.8E-06 48.6 11.8 50 238-287 215-267 (306)
309 PRK00411 cdc6 cell division co 95.6 0.15 3.1E-06 51.4 11.9 25 131-156 56-80 (394)
310 PRK14961 DNA polymerase III su 95.6 0.097 2.1E-06 51.9 10.3 39 239-278 118-156 (363)
311 PRK12724 flagellar biosynthesi 95.5 0.22 4.7E-06 49.6 12.3 54 239-292 298-356 (432)
312 TIGR00064 ftsY signal recognit 95.5 0.2 4.2E-06 47.4 11.7 55 239-293 153-214 (272)
313 TIGR00708 cobA cob(I)alamin ad 95.5 0.11 2.4E-06 45.0 9.1 52 239-290 96-149 (173)
314 PRK05580 primosome assembly pr 95.5 0.11 2.3E-06 56.1 11.0 93 321-414 172-266 (679)
315 TIGR03015 pepcterm_ATPase puta 95.4 0.076 1.6E-06 50.2 8.8 34 115-148 23-61 (269)
316 COG1219 ClpX ATP-dependent pro 95.4 0.03 6.6E-07 52.5 5.6 28 128-157 95-122 (408)
317 TIGR00580 mfd transcription-re 95.4 0.071 1.5E-06 59.0 9.4 82 331-412 493-579 (926)
318 PF13173 AAA_14: AAA domain 95.4 0.14 3.1E-06 42.2 9.3 38 240-280 61-98 (128)
319 PRK14969 DNA polymerase III su 95.4 0.14 3E-06 53.3 11.1 40 238-278 117-156 (527)
320 PRK06871 DNA polymerase III su 95.4 0.15 3.2E-06 49.4 10.5 42 238-280 105-146 (325)
321 PRK11823 DNA repair protein Ra 95.4 0.096 2.1E-06 53.3 9.7 88 130-254 80-170 (446)
322 PRK09111 DNA polymerase III su 95.4 0.11 2.3E-06 54.8 10.2 40 238-278 130-169 (598)
323 PRK14721 flhF flagellar biosyn 95.4 0.36 7.8E-06 48.4 13.4 172 130-349 191-364 (420)
324 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.16 3.4E-06 46.8 10.4 53 129-190 19-71 (229)
325 PRK14959 DNA polymerase III su 95.4 0.042 9.2E-07 57.5 7.1 18 132-149 40-57 (624)
326 cd01122 GP4d_helicase GP4d_hel 95.3 0.058 1.3E-06 51.2 7.6 41 127-174 27-67 (271)
327 PRK14950 DNA polymerase III su 95.3 0.18 4E-06 53.3 12.0 24 132-156 40-63 (585)
328 TIGR02785 addA_Gpos recombinat 95.3 0.085 1.8E-06 60.8 10.0 124 115-251 1-126 (1232)
329 PRK14952 DNA polymerase III su 95.3 0.13 2.7E-06 54.0 10.4 40 238-278 116-155 (584)
330 PRK14957 DNA polymerase III su 95.3 0.11 2.4E-06 53.9 9.8 40 238-278 117-156 (546)
331 COG1435 Tdk Thymidine kinase [ 95.3 0.23 5E-06 43.5 10.2 90 132-253 6-95 (201)
332 PRK07993 DNA polymerase III su 95.3 0.1 2.3E-06 50.8 9.2 42 115-157 2-50 (334)
333 TIGR00595 priA primosomal prot 95.2 0.12 2.6E-06 53.5 10.1 92 322-414 8-101 (505)
334 CHL00181 cbbX CbbX; Provisiona 95.2 0.17 3.6E-06 48.4 10.1 20 130-149 59-78 (287)
335 PRK05973 replicative DNA helic 95.2 0.21 4.5E-06 45.9 10.4 66 115-190 50-115 (237)
336 KOG0745 Putative ATP-dependent 95.2 0.031 6.7E-07 54.6 5.0 36 130-175 226-261 (564)
337 PF06745 KaiC: KaiC; InterPro 95.2 0.081 1.8E-06 48.6 7.8 131 129-280 18-159 (226)
338 PRK14955 DNA polymerase III su 95.2 0.18 3.8E-06 50.7 10.8 24 132-156 40-63 (397)
339 cd01121 Sms Sms (bacterial rad 95.1 0.14 3.1E-06 50.6 9.9 91 130-254 82-172 (372)
340 PRK06995 flhF flagellar biosyn 95.1 0.079 1.7E-06 53.9 8.1 20 130-149 256-275 (484)
341 PF02572 CobA_CobO_BtuR: ATP:c 95.1 0.45 9.8E-06 41.3 11.6 140 133-290 6-148 (172)
342 PRK07940 DNA polymerase III su 95.1 0.13 2.7E-06 51.4 9.3 45 239-285 116-160 (394)
343 PHA03368 DNA packaging termina 95.1 0.13 2.7E-06 53.7 9.4 131 131-280 255-389 (738)
344 PRK14873 primosome assembly pr 95.0 0.19 4.2E-06 53.6 11.1 93 321-414 170-265 (665)
345 PRK13833 conjugal transfer pro 95.0 0.094 2E-06 50.6 7.9 64 107-178 122-186 (323)
346 PRK05563 DNA polymerase III su 95.0 0.23 4.9E-06 52.2 11.3 18 132-149 40-57 (559)
347 TIGR02928 orc1/cdc6 family rep 94.9 0.22 4.8E-06 49.4 10.9 25 131-156 41-65 (365)
348 PRK06067 flagellar accessory p 94.9 0.4 8.7E-06 44.3 11.8 52 130-190 25-76 (234)
349 cd00984 DnaB_C DnaB helicase C 94.9 0.091 2E-06 48.8 7.5 40 128-174 11-50 (242)
350 PRK14954 DNA polymerase III su 94.9 0.26 5.7E-06 52.1 11.5 40 238-278 125-164 (620)
351 COG0593 DnaA ATPase involved i 94.9 0.18 4E-06 49.9 9.6 48 240-287 175-224 (408)
352 PRK09112 DNA polymerase III su 94.9 0.24 5.1E-06 48.7 10.4 40 239-279 140-179 (351)
353 KOG2028 ATPase related to the 94.8 0.11 2.3E-06 49.9 7.4 49 132-188 164-212 (554)
354 PF05876 Terminase_GpA: Phage 94.8 0.068 1.5E-06 56.0 6.8 68 115-189 16-86 (557)
355 PRK07471 DNA polymerase III su 94.8 0.29 6.4E-06 48.3 10.9 43 238-281 139-181 (365)
356 COG1200 RecG RecG-like helicas 94.8 0.17 3.6E-06 52.7 9.3 90 323-412 296-390 (677)
357 PRK13341 recombination factor 94.8 0.15 3.3E-06 54.9 9.5 41 240-285 109-149 (725)
358 PRK06090 DNA polymerase III su 94.8 0.29 6.3E-06 47.3 10.5 42 115-157 3-51 (319)
359 PRK14951 DNA polymerase III su 94.7 0.12 2.6E-06 54.5 8.4 39 239-278 123-161 (618)
360 PRK05896 DNA polymerase III su 94.7 0.095 2.1E-06 54.6 7.6 39 239-278 118-156 (605)
361 KOG0738 AAA+-type ATPase [Post 94.7 1 2.2E-05 43.9 13.6 16 131-146 246-261 (491)
362 PRK10867 signal recognition pa 94.7 0.32 7E-06 49.0 11.0 17 133-149 103-119 (433)
363 KOG0991 Replication factor C, 94.7 0.13 2.8E-06 46.2 7.1 42 238-280 111-152 (333)
364 TIGR02880 cbbX_cfxQ probable R 94.6 0.2 4.4E-06 47.7 9.2 20 130-149 58-77 (284)
365 PF02456 Adeno_IVa2: Adenoviru 94.6 0.11 2.3E-06 48.7 6.8 39 133-177 90-128 (369)
366 cd03115 SRP The signal recogni 94.6 0.67 1.5E-05 40.4 11.8 54 239-292 81-135 (173)
367 PRK04195 replication factor C 94.6 0.26 5.7E-06 50.9 10.5 19 130-148 39-57 (482)
368 PRK14962 DNA polymerase III su 94.5 0.18 3.9E-06 51.6 9.0 17 133-149 39-55 (472)
369 TIGR02525 plasmid_TraJ plasmid 94.5 0.12 2.6E-06 51.0 7.3 27 130-157 149-175 (372)
370 PF10593 Z1: Z1 domain; Inter 94.4 0.094 2E-06 48.4 6.2 83 389-475 136-219 (239)
371 PF04665 Pox_A32: Poxvirus A32 94.4 0.15 3.3E-06 46.8 7.3 35 132-174 15-49 (241)
372 COG2109 BtuR ATP:corrinoid ade 94.4 0.7 1.5E-05 40.2 10.8 142 133-291 31-175 (198)
373 PHA00729 NTP-binding motif con 94.4 0.33 7.2E-06 44.1 9.4 74 218-291 60-138 (226)
374 COG4962 CpaF Flp pilus assembl 94.4 0.12 2.5E-06 49.5 6.7 60 111-179 153-213 (355)
375 COG2909 MalT ATP-dependent tra 94.4 0.38 8.3E-06 51.3 11.0 43 240-282 129-171 (894)
376 PRK04841 transcriptional regul 94.4 0.32 6.9E-06 54.7 11.5 44 240-283 121-164 (903)
377 TIGR02639 ClpA ATP-dependent C 94.3 0.77 1.7E-05 50.1 13.9 19 131-149 204-222 (731)
378 TIGR02524 dot_icm_DotB Dot/Icm 94.3 0.13 2.9E-06 50.5 7.3 27 129-156 133-159 (358)
379 PRK11034 clpA ATP-dependent Cl 94.3 0.41 8.9E-06 51.9 11.5 20 130-149 207-226 (758)
380 PRK13894 conjugal transfer ATP 94.3 0.16 3.5E-06 49.1 7.7 66 105-178 124-190 (319)
381 PRK00440 rfc replication facto 94.3 0.65 1.4E-05 45.1 12.2 39 240-279 102-140 (319)
382 PRK14963 DNA polymerase III su 94.2 0.17 3.8E-06 52.2 8.2 23 133-156 39-61 (504)
383 PRK04328 hypothetical protein; 94.2 0.44 9.4E-06 44.5 10.2 54 129-191 22-75 (249)
384 TIGR02782 TrbB_P P-type conjug 94.2 0.21 4.6E-06 47.9 8.2 67 105-179 108-175 (299)
385 PRK10689 transcription-repair 94.2 0.21 4.6E-06 56.7 9.3 78 335-412 646-728 (1147)
386 COG2804 PulE Type II secretory 94.1 0.084 1.8E-06 53.1 5.4 41 116-157 242-284 (500)
387 COG0552 FtsY Signal recognitio 94.0 0.93 2E-05 43.3 11.8 129 133-292 142-280 (340)
388 COG1198 PriA Primosomal protei 94.0 0.22 4.9E-06 53.1 8.5 95 316-411 222-318 (730)
389 TIGR00678 holB DNA polymerase 93.9 0.43 9.2E-06 42.4 9.3 39 238-277 94-132 (188)
390 PRK14948 DNA polymerase III su 93.9 0.27 5.9E-06 52.1 9.1 26 131-157 39-64 (620)
391 TIGR00959 ffh signal recogniti 93.8 0.71 1.5E-05 46.5 11.5 54 240-293 182-236 (428)
392 COG1474 CDC6 Cdc6-related prot 93.8 0.76 1.6E-05 45.4 11.5 25 132-157 44-68 (366)
393 PHA00012 I assembly protein 93.8 1.7 3.8E-05 41.5 13.1 56 239-295 80-141 (361)
394 COG4626 Phage terminase-like p 93.7 0.36 7.7E-06 49.2 8.9 145 114-279 60-223 (546)
395 COG5008 PilU Tfp pilus assembl 93.6 0.94 2E-05 41.7 10.5 27 129-156 125-152 (375)
396 PRK06305 DNA polymerase III su 93.6 0.47 1E-05 48.5 9.9 39 239-278 120-158 (451)
397 PF03969 AFG1_ATPase: AFG1-lik 93.6 1.6 3.4E-05 43.1 13.1 110 130-285 62-172 (362)
398 TIGR03345 VI_ClpV1 type VI sec 93.5 0.7 1.5E-05 51.1 11.6 30 120-149 192-227 (852)
399 COG1110 Reverse gyrase [DNA re 93.4 0.24 5.2E-06 53.7 7.5 89 325-414 113-211 (1187)
400 PRK10416 signal recognition pa 93.4 1.7 3.8E-05 42.0 12.9 55 239-293 195-256 (318)
401 PRK08451 DNA polymerase III su 93.3 0.31 6.8E-06 50.4 8.0 40 238-278 115-154 (535)
402 PRK14971 DNA polymerase III su 93.3 0.37 8.1E-06 51.1 8.8 41 238-280 119-159 (614)
403 PRK07414 cob(I)yrinic acid a,c 93.2 1.2 2.6E-05 38.8 10.3 138 133-290 24-167 (178)
404 PF06733 DEAD_2: DEAD_2; Inte 93.1 0.059 1.3E-06 47.3 2.3 46 210-255 113-160 (174)
405 KOG1133 Helicase of the DEAD s 93.1 0.14 2.9E-06 53.1 5.0 45 114-158 14-62 (821)
406 PRK13900 type IV secretion sys 93.1 0.29 6.2E-06 47.7 7.2 42 128-178 158-199 (332)
407 KOG1513 Nuclear helicase MOP-3 93.1 0.16 3.4E-06 53.3 5.4 80 382-461 851-942 (1300)
408 KOG0741 AAA+-type ATPase [Post 93.1 2.2 4.8E-05 43.3 13.0 69 98-176 494-574 (744)
409 TIGR02012 tigrfam_recA protein 93.1 0.23 5E-06 47.9 6.3 44 129-180 54-97 (321)
410 PRK06647 DNA polymerase III su 93.0 0.5 1.1E-05 49.5 9.3 24 132-156 40-63 (563)
411 TIGR03880 KaiC_arch_3 KaiC dom 93.0 0.69 1.5E-05 42.4 9.3 52 130-190 16-67 (224)
412 PF03237 Terminase_6: Terminas 93.0 1.9 4.1E-05 42.7 13.3 145 134-296 1-154 (384)
413 TIGR03600 phage_DnaB phage rep 92.9 1.3 2.8E-05 45.0 12.0 38 129-173 193-230 (421)
414 TIGR03689 pup_AAA proteasome A 92.9 0.41 8.8E-06 49.3 8.2 18 130-147 216-233 (512)
415 PRK09354 recA recombinase A; P 92.8 0.33 7.2E-06 47.3 7.1 43 130-180 60-102 (349)
416 TIGR03499 FlhF flagellar biosy 92.8 0.15 3.3E-06 48.5 4.8 19 131-149 195-213 (282)
417 PRK07399 DNA polymerase III su 92.8 0.78 1.7E-05 44.4 9.6 59 219-280 104-162 (314)
418 PRK06904 replicative DNA helic 92.7 2 4.4E-05 44.1 13.0 115 130-254 221-348 (472)
419 TIGR00416 sms DNA repair prote 92.7 0.97 2.1E-05 46.2 10.6 91 130-254 94-184 (454)
420 KOG1513 Nuclear helicase MOP-3 92.7 0.086 1.9E-06 55.2 3.0 156 114-280 263-453 (1300)
421 cd00983 recA RecA is a bacter 92.7 0.32 7E-06 46.9 6.7 43 130-180 55-97 (325)
422 PHA03372 DNA packaging termina 92.7 1.3 2.8E-05 45.8 11.2 124 131-280 203-336 (668)
423 TIGR00635 ruvB Holliday juncti 92.7 0.22 4.8E-06 48.1 5.8 17 131-147 31-47 (305)
424 TIGR01420 pilT_fam pilus retra 92.6 0.38 8.3E-06 47.3 7.4 42 130-178 122-163 (343)
425 TIGR02655 circ_KaiC circadian 92.6 0.91 2E-05 46.9 10.5 60 122-190 250-314 (484)
426 cd01128 rho_factor Transcripti 92.6 0.59 1.3E-05 43.5 8.2 19 128-146 14-32 (249)
427 CHL00095 clpC Clp protease ATP 92.6 1.1 2.4E-05 49.5 11.7 19 131-149 201-219 (821)
428 PRK08058 DNA polymerase III su 92.5 0.83 1.8E-05 44.6 9.5 41 238-279 108-148 (329)
429 TIGR03346 chaperone_ClpB ATP-d 92.4 0.71 1.5E-05 51.3 9.9 19 131-149 195-213 (852)
430 PRK13851 type IV secretion sys 92.4 0.21 4.4E-06 48.9 5.1 44 127-179 159-202 (344)
431 KOG0298 DEAD box-containing he 92.3 0.18 3.9E-06 55.7 5.0 99 337-440 1220-1319(1394)
432 TIGR02868 CydC thiol reductant 92.3 0.24 5.1E-06 52.0 5.9 41 238-278 486-526 (529)
433 PF03796 DnaB_C: DnaB-like hel 92.3 0.72 1.6E-05 43.3 8.5 112 130-255 19-145 (259)
434 COG3267 ExeA Type II secretory 92.2 1.3 2.8E-05 40.7 9.4 22 127-148 47-69 (269)
435 PF05729 NACHT: NACHT domain 92.2 1.9 4.1E-05 36.9 10.7 38 243-280 84-129 (166)
436 TIGR01243 CDC48 AAA family ATP 92.2 0.61 1.3E-05 51.0 9.0 18 130-147 487-504 (733)
437 COG1197 Mfd Transcription-repa 92.2 0.71 1.5E-05 51.2 9.2 81 331-411 636-721 (1139)
438 KOG0733 Nuclear AAA ATPase (VC 92.2 1.2 2.6E-05 46.0 10.1 53 91-146 506-561 (802)
439 PF01443 Viral_helicase1: Vira 92.2 0.15 3.3E-06 47.0 3.8 14 133-146 1-14 (234)
440 PRK07133 DNA polymerase III su 92.2 0.46 1E-05 50.8 7.7 17 133-149 43-59 (725)
441 TIGR02397 dnaX_nterm DNA polym 92.1 0.63 1.4E-05 46.0 8.4 24 132-156 38-61 (355)
442 cd01129 PulE-GspE PulE/GspE Th 92.1 0.41 8.9E-06 45.1 6.6 38 117-155 65-104 (264)
443 cd01125 repA Hexameric Replica 92.1 1.4 3.1E-05 40.8 10.2 56 132-187 3-65 (239)
444 TIGR01243 CDC48 AAA family ATP 92.1 1.1 2.4E-05 49.0 10.8 18 129-146 211-228 (733)
445 PF00265 TK: Thymidine kinase; 92.1 0.39 8.5E-06 42.1 6.0 35 133-175 4-38 (176)
446 PRK14953 DNA polymerase III su 92.0 0.28 6.1E-06 50.4 5.8 17 133-149 41-57 (486)
447 PRK10436 hypothetical protein; 92.0 0.35 7.5E-06 49.3 6.3 40 116-156 202-243 (462)
448 PRK10865 protein disaggregatio 91.9 0.82 1.8E-05 50.7 9.6 19 131-149 200-218 (857)
449 TIGR00614 recQ_fam ATP-depende 91.9 0.98 2.1E-05 46.6 9.7 76 337-412 50-133 (470)
450 PRK03992 proteasome-activating 91.8 0.72 1.6E-05 46.2 8.4 18 130-147 165-182 (389)
451 KOG0740 AAA+-type ATPase [Post 91.8 0.72 1.6E-05 45.9 8.1 52 240-291 245-309 (428)
452 TIGR00767 rho transcription te 91.8 0.88 1.9E-05 45.0 8.6 19 129-147 167-185 (415)
453 TIGR02688 conserved hypothetic 91.8 0.53 1.2E-05 46.8 7.1 25 125-149 204-228 (449)
454 KOG0344 ATP-dependent RNA heli 91.7 2.1 4.6E-05 43.7 11.2 100 137-251 364-467 (593)
455 PRK13764 ATPase; Provisional 91.6 0.46 9.9E-06 49.9 6.8 27 129-156 256-282 (602)
456 COG3972 Superfamily I DNA and 91.5 2.9 6.4E-05 42.0 11.7 144 103-254 151-309 (660)
457 KOG2170 ATPase of the AAA+ sup 91.4 0.72 1.6E-05 43.3 7.1 51 242-293 180-237 (344)
458 COG2812 DnaX DNA polymerase II 91.3 0.22 4.7E-06 51.0 4.0 39 238-280 117-156 (515)
459 PRK08840 replicative DNA helic 91.3 3.2 7E-05 42.5 12.5 50 129-186 216-265 (464)
460 PF02534 T4SS-DNA_transf: Type 91.2 0.22 4.8E-06 51.3 4.2 50 131-190 45-94 (469)
461 COG0466 Lon ATP-dependent Lon 91.2 0.56 1.2E-05 49.2 6.9 65 198-267 380-444 (782)
462 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.2 1.4 3E-05 37.2 8.3 31 238-268 86-116 (144)
463 PRK14970 DNA polymerase III su 91.2 1.3 2.9E-05 43.9 9.5 24 132-156 41-64 (367)
464 PRK09376 rho transcription ter 91.1 1.4 3E-05 43.6 9.1 27 129-156 168-194 (416)
465 PRK00080 ruvB Holliday junctio 91.1 0.62 1.4E-05 45.5 6.9 18 131-148 52-69 (328)
466 COG1222 RPT1 ATP-dependent 26S 91.0 1.1 2.4E-05 43.1 8.1 18 130-147 185-202 (406)
467 TIGR01241 FtsH_fam ATP-depende 90.9 1.2 2.7E-05 46.2 9.3 17 131-147 89-105 (495)
468 COG2255 RuvB Holliday junction 90.9 0.85 1.8E-05 42.5 7.0 18 132-149 54-71 (332)
469 PF12846 AAA_10: AAA-like doma 90.7 0.36 7.7E-06 46.3 4.8 42 131-180 2-43 (304)
470 cd03239 ABC_SMC_head The struc 90.7 0.36 7.8E-06 42.5 4.4 42 239-280 115-157 (178)
471 PRK08506 replicative DNA helic 90.6 2.8 6.1E-05 43.1 11.4 113 130-254 192-316 (472)
472 TIGR02533 type_II_gspE general 90.6 0.48 1E-05 48.8 5.7 39 116-155 226-266 (486)
473 PRK09087 hypothetical protein; 90.5 0.81 1.8E-05 42.0 6.8 41 242-284 89-130 (226)
474 CHL00176 ftsH cell division pr 90.5 2.7 5.8E-05 44.9 11.3 17 131-147 217-233 (638)
475 KOG2543 Origin recognition com 90.5 3.4 7.4E-05 40.3 10.8 46 239-284 114-161 (438)
476 KOG0058 Peptide exporter, ABC 90.4 2.2 4.7E-05 45.1 10.3 38 238-275 620-657 (716)
477 COG4152 ABC-type uncharacteriz 90.4 2.7 5.8E-05 38.5 9.5 56 238-293 146-201 (300)
478 TIGR00665 DnaB replicative DNA 90.4 3.2 6.9E-05 42.3 11.7 112 130-253 195-318 (434)
479 cd01130 VirB11-like_ATPase Typ 90.3 0.64 1.4E-05 41.2 5.7 32 115-146 9-41 (186)
480 PRK07004 replicative DNA helic 90.3 2.2 4.8E-05 43.7 10.3 38 130-174 213-250 (460)
481 cd01393 recA_like RecA is a b 90.3 1.5 3.3E-05 40.0 8.4 45 130-176 19-63 (226)
482 COG1485 Predicted ATPase [Gene 90.2 9 0.00019 37.1 13.3 109 131-285 66-175 (367)
483 PRK08006 replicative DNA helic 90.1 5.3 0.00011 41.1 12.8 114 130-253 224-349 (471)
484 TIGR03878 thermo_KaiC_2 KaiC d 90.1 0.86 1.9E-05 42.8 6.6 38 129-174 35-72 (259)
485 PRK13897 type IV secretion sys 90.0 0.24 5.1E-06 52.2 3.1 50 131-190 159-208 (606)
486 COG1132 MdlB ABC-type multidru 90.0 1.2 2.7E-05 47.1 8.6 41 238-278 481-521 (567)
487 TIGR02538 type_IV_pilB type IV 90.0 0.63 1.4E-05 49.0 6.2 40 116-156 300-341 (564)
488 cd01126 TraG_VirD4 The TraG/Tr 89.9 0.16 3.6E-06 50.8 1.7 48 132-189 1-48 (384)
489 PRK05748 replicative DNA helic 89.9 4.1 8.8E-05 41.7 11.9 112 130-253 203-327 (448)
490 KOG2228 Origin recognition com 89.8 2.4 5.2E-05 40.6 9.0 56 226-281 123-181 (408)
491 TIGR02858 spore_III_AA stage I 89.6 4.3 9.3E-05 38.3 10.8 25 122-146 100-127 (270)
492 PRK08760 replicative DNA helic 89.5 3.2 7E-05 42.7 10.8 111 131-253 230-352 (476)
493 COG4555 NatA ABC-type Na+ tran 89.5 2.5 5.5E-05 37.5 8.4 54 238-291 149-202 (245)
494 COG3973 Superfamily I DNA and 89.4 3 6.6E-05 43.0 10.1 123 273-415 590-716 (747)
495 KOG0732 AAA+-type ATPase conta 89.3 0.97 2.1E-05 49.9 7.0 54 92-146 261-315 (1080)
496 COG4178 ABC-type uncharacteriz 89.3 2.4 5.2E-05 44.3 9.5 41 237-277 530-570 (604)
497 COG1221 PspF Transcriptional r 89.2 3.3 7.1E-05 41.2 10.1 24 126-149 97-120 (403)
498 COG0467 RAD55 RecA-superfamily 89.2 0.81 1.8E-05 43.0 5.8 55 129-192 22-76 (260)
499 PRK14701 reverse gyrase; Provi 89.2 1.3 2.8E-05 52.3 8.4 61 337-397 121-187 (1638)
500 PHA00350 putative assembly pro 89.2 4.1 8.9E-05 40.5 10.7 17 133-149 4-20 (399)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-85 Score=636.90 Aligned_cols=432 Identities=65% Similarity=1.070 Sum_probs=407.0
Q ss_pred CCCCcccccccccCccccCCCHHHHHHHHHhcCceEecCC-CCCCcCCcccC----------------------------
Q 010876 48 DGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRD-VPKPVKSFRDV---------------------------- 98 (498)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~~~~~-~~~~~~~f~~~---------------------------- 98 (498)
..++++.+++|.+++........+.+.+++..++.+++.. +|+|..+|++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 5678899999999999999999999999999999988766 88887776543
Q ss_pred -CCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhc-CCCCCCCCCCEEEEEcCcH
Q 010876 99 -GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNA-QPFLAPGDGPIVLVLAPTR 176 (498)
Q Consensus 99 -~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~-~~~~~~~~~~~vlvl~P~~ 176 (498)
++++.+...++..+|..|+|+|.+.||.+++|+|++.+|.||||||++|++|++.++.. +.....+++|++|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 45566667777999999999999999999999999999999999999999999999998 6667778899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC
Q 010876 177 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 256 (498)
Q Consensus 177 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~ 256 (498)
|||.|+.+.+.+|+..+.+++.|+|||.+...|.+++.++.+|+|+||++|.++++....+++++.|+|+||||+|++++
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhc-CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCC-CcccccceeeeEeecchhhhHHHHHHHHHh
Q 010876 257 FEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP-DLKANHAIRQHVDIVSESQKYNKLVKLLED 334 (498)
Q Consensus 257 ~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 334 (498)
|.+++++|+..+ ++..|++++|||||.++..++..|+.+|..+.+... .+.++..+.|.+..++...|...|..+|..
T Consensus 256 Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~ 335 (519)
T KOG0331|consen 256 FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLED 335 (519)
T ss_pred cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHH
Confidence 999999999999 677799999999999999999999999999998866 778899999999999999999999999999
Q ss_pred hc--CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEE
Q 010876 335 IM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 412 (498)
Q Consensus 335 ~~--~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~ 412 (498)
.. ..+|+||||++++.|++|+..|+..++++..|||+++|.+|+.+++.|++|++.|||||+++++|||||+|++|||
T Consensus 336 ~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 336 ISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN 415 (519)
T ss_pred HhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe
Confidence 86 4559999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHhhhcCCCCCC
Q 010876 413 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPSS 479 (498)
Q Consensus 413 ~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~ 479 (498)
||+|.+.++|+||+||+||.|+.|.+++|++..+...+..+.+.++++++++|+.|.++++...+++
T Consensus 416 ydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~~~~ 482 (519)
T KOG0331|consen 416 YDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSGSGG 482 (519)
T ss_pred CCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999988764433
No 2
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.9e-81 Score=644.78 Aligned_cols=443 Identities=65% Similarity=1.049 Sum_probs=412.4
Q ss_pred CCCCCCCCCC-CCCCCCCcccccccccCccccCCCHHHHHHHHHhcCceE-ecCCCCCCcCCcccCCCCHHHHHHHHHCC
Q 010876 35 DYDGAESPRK-LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVMQEISKAG 112 (498)
Q Consensus 35 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~-~~~~~~~~~~~f~~~~l~~~~~~~l~~~~ 112 (498)
+..+..+... |+...+++++|+||.+++.+..++.++++++++..++.+ .+..+|+|+.+|+++++++.+++.|.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g 149 (545)
T PTZ00110 70 STLGKRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAG 149 (545)
T ss_pred cccccccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCC
Confidence 3444455555 888899999999999999999999999999999998886 68899999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 113 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 113 ~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
|.+|+|+|.++||.+++|+|+|++||||||||++|++|++.++..++......++.+|||+||++||.|+.+++.+|+..
T Consensus 150 ~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~ 229 (545)
T PTZ00110 150 FTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGAS 229 (545)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998766555566899999999999999999999999999
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCC
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 272 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~ 272 (498)
.++++.+++++.....+...+..+++|+|+||++|.+++.....++.++++|||||||++++++|..++.+++..++++.
T Consensus 230 ~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~ 309 (545)
T PTZ00110 230 SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 309 (545)
T ss_pred cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCC
Confidence 99999999999998888888889999999999999999998888899999999999999999999999999999999999
Q ss_pred cEEEEcCCCcHHHHHHHHHHhc-CCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhc-CCCeEEEEeCCccc
Q 010876 273 QTLYWSATWPKEVEHLARQYLY-NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKG 350 (498)
Q Consensus 273 ~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~ 350 (498)
|++++|||+|.+++.+++.++. ++..+.+..........+.+.+..+....|...|..++.... ...++||||++++.
T Consensus 310 q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~ 389 (545)
T PTZ00110 310 QTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKG 389 (545)
T ss_pred eEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHH
Confidence 9999999999999999998886 577777776665666778888888888889999999988875 56799999999999
Q ss_pred HHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccc
Q 010876 351 CDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTG 430 (498)
Q Consensus 351 ~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~ 430 (498)
|+.+++.|+..++++..+||++++++|+.+++.|++|+.+|||||+++++|||+|++++||+||+|.++++|+||+||+|
T Consensus 390 a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtG 469 (545)
T PTZ00110 390 ADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTG 469 (545)
T ss_pred HHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHhhhcCCCC
Q 010876 431 RAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPP 477 (498)
Q Consensus 431 R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~ 477 (498)
|.|+.|.|++|+++++...+.+|+++|++.++++|++|.+|+.....
T Consensus 470 R~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~~ 516 (545)
T PTZ00110 470 RAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERSN 516 (545)
T ss_pred cCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999976654
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-79 Score=559.75 Aligned_cols=431 Identities=47% Similarity=0.801 Sum_probs=405.6
Q ss_pred CCCCCCcccccccccCccccCCCHHHHHHHHHhcC-ceE------ecCCCCCCcCCccc-CCCCHHHHHHHHHCCCCCCc
Q 010876 46 DLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQRE-ITV------EGRDVPKPVKSFRD-VGFPDYVMQEISKAGFFEPT 117 (498)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-i~~------~~~~~~~~~~~f~~-~~l~~~~~~~l~~~~~~~~~ 117 (498)
.|.+++|..|+||.+.+..+.++.++++++++++. +.+ +..++|+|..+|++ +...+++++.+.+.||.+|+
T Consensus 165 kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPt 244 (629)
T KOG0336|consen 165 KWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPT 244 (629)
T ss_pred ccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCC
Confidence 36689999999999999999999999999999854 333 23568999999997 47788999999999999999
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCC-CCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCce
Q 010876 118 PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA-PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 196 (498)
Q Consensus 118 ~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~ 196 (498)
|+|.+|||.+|+|.|++.+|.||+|||++|++|.+.|+..++... ...++.+|+++||++||.|+.-++.++. ..+++
T Consensus 245 PIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~k 323 (629)
T KOG0336|consen 245 PIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLK 323 (629)
T ss_pred cchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcc
Confidence 999999999999999999999999999999999999998876433 4568999999999999999998888875 56799
Q ss_pred EEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEE
Q 010876 197 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLY 276 (498)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 276 (498)
.+|++|+.....++.++..+.+|+|+||++|.++...+..++..+.|+|+||||+|++|+|.+++++|+-.+++++|+++
T Consensus 324 svc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvm 403 (629)
T KOG0336|consen 324 SVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVM 403 (629)
T ss_pred eEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHH
Q 010876 277 WSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITR 356 (498)
Q Consensus 277 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~ 356 (498)
.|||||+.+..++..|+.+|+.+.++..++.....++|.+.+..+.+|...+..++.......++||||..+..|+.|..
T Consensus 404 TSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSS 483 (629)
T KOG0336|consen 404 TSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSS 483 (629)
T ss_pred ecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccc
Confidence 99999999999999999999999999999999999999998888889998888888888888899999999999999999
Q ss_pred HHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcc
Q 010876 357 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG 436 (498)
Q Consensus 357 ~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g 436 (498)
.|.-.|+....+||+..+.+|+..++.|++|+++|||||+++++|+|++++.||+|||+|.+++.|+||+||+||+|+.|
T Consensus 484 d~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G 563 (629)
T KOG0336|consen 484 DFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTG 563 (629)
T ss_pred hhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHhhhcCCCC
Q 010876 437 TAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPP 477 (498)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~ 477 (498)
.+++|++.+|..++..|+++|++++|+||++|..||+.+.-
T Consensus 564 ~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~ 604 (629)
T KOG0336|consen 564 TSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYKL 604 (629)
T ss_pred ceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987733
No 4
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-77 Score=560.39 Aligned_cols=428 Identities=48% Similarity=0.790 Sum_probs=412.0
Q ss_pred CCCCCCCcccccccccCccccCCCHHHHHHHHHhcCceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHH
Q 010876 45 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGW 124 (498)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i 124 (498)
......++|+|+||.++.+++.++..+...++....+.+.+...|+|+.+|+.+++++.+..++.+.-|.+|||+|.+++
T Consensus 175 hs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qal 254 (731)
T KOG0339|consen 175 HSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQAL 254 (731)
T ss_pred hhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCccccccc
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010876 125 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 204 (498)
Q Consensus 125 ~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~ 204 (498)
|.+++|++++-+|.||||||.+|+.|++.|+..++.+..+++|..||+||||+||.|++.++++|++..+++++++|||.
T Consensus 255 ptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGg 334 (731)
T KOG0339|consen 255 PTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGG 334 (731)
T ss_pred ccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHH
Q 010876 205 PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKE 284 (498)
Q Consensus 205 ~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 284 (498)
+..+|...+..++.||||||++|++++.....++.++++|||||+++|.+++|.++++.|...+++++|+|+||||++..
T Consensus 335 sk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~k 414 (731)
T KOG0339|consen 335 SKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKK 414 (731)
T ss_pred cHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecch-hhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCC
Q 010876 285 VEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW 363 (498)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~ 363 (498)
++.+++.++.+|+.+..+... ..+..+.|.+.++.+ ..|+..|+..|-.....+++|||+.-+..++.++..|+..++
T Consensus 415 Ie~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~ 493 (731)
T KOG0339|consen 415 IEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF 493 (731)
T ss_pred HHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccc
Confidence 999999999999998887654 567788998888765 568899998888887888999999999999999999999999
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEec
Q 010876 364 PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 443 (498)
Q Consensus 364 ~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 443 (498)
.+..+||+|.+.+|.+++..|+.+...|||+|+++++|+||+++..||+||.-.+++.|.|||||+||.|..|.+|++++
T Consensus 494 ~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvT 573 (731)
T KOG0339|consen 494 NVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVT 573 (731)
T ss_pred eeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhCCCCCHHHHhhhc
Q 010876 444 AANARFAKELITILEEAGQKVSPELAAMGR 473 (498)
Q Consensus 444 ~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 473 (498)
+.|.+++..|++.|+.++|.||++|.+||.
T Consensus 574 eKDa~fAG~LVnnLe~agQnVP~~l~dlam 603 (731)
T KOG0339|consen 574 EKDAEFAGHLVNNLEGAGQNVPDELMDLAM 603 (731)
T ss_pred hhhHHHhhHHHHHHhhccccCChHHHHHHh
Confidence 999999999999999999999999998874
No 5
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.3e-70 Score=564.37 Aligned_cols=426 Identities=36% Similarity=0.613 Sum_probs=387.6
Q ss_pred CCCCCCCcccccccccCccccC-CCHHHHHHHHHhcCceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHH
Q 010876 45 LDLDGLTPFEKNFYVESPSVAA-MSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQG 123 (498)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~i~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~ 123 (498)
-+.+.+++++++||..++.... ++.++++.+++..++.+.|...|+|+.+|+++++++.+++.+.+.||..|+|+|.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~a 151 (518)
T PLN00206 72 PKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQA 151 (518)
T ss_pred CchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHH
Confidence 3455778899999999887765 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCC--CCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEe
Q 010876 124 WPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF--LAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIY 201 (498)
Q Consensus 124 i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~--~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~ 201 (498)
|+.+++|+|+++++|||||||++|++|++.++..... .....++++|||+||++||.|+.+.+..+....++++..++
T Consensus 152 ip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~ 231 (518)
T PLN00206 152 IPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVV 231 (518)
T ss_pred HHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 9999999999999999999999999999998864321 12235789999999999999999999999988889999999
Q ss_pred CCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCC
Q 010876 202 GGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 281 (498)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 281 (498)
||.....+...+..+++|+|+||++|.+++.+....+.++++||+||||+|++++|...+..++..+ +.+|++++|||+
T Consensus 232 gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl 310 (518)
T PLN00206 232 GGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQPQVLLFSATV 310 (518)
T ss_pred CCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CCCcEEEEEeeC
Confidence 9998888888888899999999999999999888889999999999999999999999999999888 478999999999
Q ss_pred cHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHhh
Q 010876 282 PKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRM 360 (498)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-~~~vlIf~~s~~~~~~l~~~L~~ 360 (498)
+++++.++..++.++..+.+.... .....+.+.+..+....+...+.+++..... ..++||||+++..|+.+++.|..
T Consensus 311 ~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~ 389 (518)
T PLN00206 311 SPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITV 389 (518)
T ss_pred CHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhh
Confidence 999999999999888888776654 3455567777777777888888888876432 35899999999999999999975
Q ss_pred -CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEE
Q 010876 361 -DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY 439 (498)
Q Consensus 361 -~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~ 439 (498)
.++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|..|.++
T Consensus 390 ~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai 469 (518)
T PLN00206 390 VTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAI 469 (518)
T ss_pred ccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHHHHHhCCCCCHHHHhhh
Q 010876 440 TFFTAANARFAKELITILEEAGQKVSPELAAMG 472 (498)
Q Consensus 440 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~ 472 (498)
+|+++++...+.++.+.++..++.+|++|.++.
T Consensus 470 ~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 470 VFVNEEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred EEEchhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 999999999999999999999999999998865
No 6
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.4e-71 Score=526.71 Aligned_cols=410 Identities=46% Similarity=0.757 Sum_probs=382.7
Q ss_pred cccCCCHHHHHHHHHhcCceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCch
Q 010876 63 SVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSG 142 (498)
Q Consensus 63 ~~~~~~~~e~~~~~~~~~i~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsG 142 (498)
....|++.++.-|+..-.+.+++..+|.|+.+|++.+||..+++.+.+.||..|+|+|.+++|..++.+|+|.+|.||||
T Consensus 215 ~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsG 294 (673)
T KOG0333|consen 215 VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSG 294 (673)
T ss_pred hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCC
Confidence 35667778888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCC----CCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCc
Q 010876 143 KTLAYLLPAIVHVNAQPFLA----PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVE 218 (498)
Q Consensus 143 KT~~~~l~~l~~~~~~~~~~----~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (498)
||++|++|++..+...+... ...+|.+++++|||+||+|+.++-.+|+..++++++.+.||.+..++--.+..+|+
T Consensus 295 ktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gce 374 (673)
T KOG0333|consen 295 KTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCE 374 (673)
T ss_pred ccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccce
Confidence 99999999999998877433 34689999999999999999999999999999999999999999999888999999
Q ss_pred EEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCC-------------------------CCc
Q 010876 219 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP-------------------------DRQ 273 (498)
Q Consensus 219 Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~-------------------------~~~ 273 (498)
|+|+||++|.+.|++..+-+.++.+||+|||++|.+++|.+.+..++..++. -.|
T Consensus 375 iviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrq 454 (673)
T KOG0333|consen 375 IVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQ 454 (673)
T ss_pred eeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeE
Confidence 9999999999999999999999999999999999999999999999988851 169
Q ss_pred EEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHH
Q 010876 274 TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQ 353 (498)
Q Consensus 274 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~ 353 (498)
+++||||+|+.++.+++.|+.+|..+.++... .....+.|.+..+....|...|.++|... ...++|||+|+++.|+.
T Consensus 455 T~mftatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~ 532 (673)
T KOG0333|consen 455 TVMFTATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADA 532 (673)
T ss_pred EEEEecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHH
Confidence 99999999999999999999999999998876 56778899999999999999999999986 34589999999999999
Q ss_pred HHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCC
Q 010876 354 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 433 (498)
Q Consensus 354 l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g 433 (498)
|++.|.+.++.+..|||+.++++|+.++..|++|..+|||||+++++|||||+|.+|||||++.++++|.|||||+||+|
T Consensus 533 lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAG 612 (673)
T KOG0333|consen 533 LAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAG 612 (673)
T ss_pred HHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEeccccHHHHHHHHHHHHH-hCCCCCHHHHhhhcC
Q 010876 434 AKGTAYTFFTAANARFAKELITILEE-AGQKVSPELAAMGRG 474 (498)
Q Consensus 434 ~~g~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~l~~~~~~ 474 (498)
+.|.+++|+++.|...+++|...|.+ .....|++|....+.
T Consensus 613 k~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~a 654 (673)
T KOG0333|consen 613 KSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPDA 654 (673)
T ss_pred cCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChhh
Confidence 99999999999999999999998874 477889998765543
No 7
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.2e-72 Score=515.49 Aligned_cols=416 Identities=42% Similarity=0.699 Sum_probs=385.9
Q ss_pred ccccCccccCCCHHHHHHHHHhcCceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEE
Q 010876 57 FYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGI 136 (498)
Q Consensus 57 ~~~~~~~~~~~~~~e~~~~~~~~~i~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~ 136 (498)
.|...--+..+|+++.+..+++..|.++++.+|+|+.+|.++.+|..+++.+++.|+.+|||+|.+.+|.+++|+|+|.+
T Consensus 134 ~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGI 213 (610)
T KOG0341|consen 134 AWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGI 213 (610)
T ss_pred ccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeE
Confidence 34444567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHhcCC---CCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC------CCceEEEEeCCCCCc
Q 010876 137 AETGSGKTLAYLLPAIVHVNAQP---FLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS------SKIKSTCIYGGVPKG 207 (498)
Q Consensus 137 a~TGsGKT~~~~l~~l~~~~~~~---~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~------~~~~~~~~~~~~~~~ 207 (498)
|-||||||++|.+|++...+.+. .+..+.+|..||+||+|+||.|.++.+..|... ..++...+.||.+..
T Consensus 214 AfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~ 293 (610)
T KOG0341|consen 214 AFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVR 293 (610)
T ss_pred EeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHH
Confidence 99999999999999988777643 345678999999999999999999888876432 347788899999999
Q ss_pred hhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHH
Q 010876 208 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEH 287 (498)
Q Consensus 208 ~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 287 (498)
.+...++.+.+|+|+||++|.+++.+...+|.-+.|+.+||||+|.+++|...++.+...+...+|+++||||+|..++.
T Consensus 294 eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~ 373 (610)
T KOG0341|consen 294 EQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQN 373 (610)
T ss_pred HHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEE
Q 010876 288 LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 367 (498)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~ 367 (498)
+++..+..|+.+.++... .++.++.|.+..+..+.|+..++++|+... .++||||..+..++.++++|--.|..+..
T Consensus 374 FAkSALVKPvtvNVGRAG-AAsldViQevEyVkqEaKiVylLeCLQKT~--PpVLIFaEkK~DVD~IhEYLLlKGVEava 450 (610)
T KOG0341|consen 374 FAKSALVKPVTVNVGRAG-AASLDVIQEVEYVKQEAKIVYLLECLQKTS--PPVLIFAEKKADVDDIHEYLLLKGVEAVA 450 (610)
T ss_pred HHHhhcccceEEeccccc-ccchhHHHHHHHHHhhhhhhhHHHHhccCC--CceEEEeccccChHHHHHHHHHccceeEE
Confidence 999999999999998876 566777788888999999999999988753 48999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccc-c
Q 010876 368 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-N 446 (498)
Q Consensus 368 lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~ 446 (498)
+||+.++++|...++.|+.|+.+|||||++++.|+|+|++.+|||||+|..++.|+|||||+||.|++|.+.+|+..+ +
T Consensus 451 IHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 451 IHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred eecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 6
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHhhhcCC
Q 010876 447 ARFAKELITILEEAGQKVSPELAAMGRGA 475 (498)
Q Consensus 447 ~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 475 (498)
...+.+|..+|.+++|++|+.|..++..-
T Consensus 531 esvLlDLK~LL~EakQ~vP~~L~~L~~~~ 559 (610)
T KOG0341|consen 531 ESVLLDLKHLLQEAKQEVPPVLAELAGPM 559 (610)
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHhCCCc
Confidence 67889999999999999999999987543
No 8
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-71 Score=508.11 Aligned_cols=370 Identities=39% Similarity=0.602 Sum_probs=349.3
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEE
Q 010876 90 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 169 (498)
Q Consensus 90 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 169 (498)
....+|.++++.+.++++++..+|..|+++|+++||.++.|+|+|..|+||||||.+|++|++++++.++ ..+++
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-----~~~~~ 132 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP-----KLFFA 132 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-----CCceE
Confidence 3457899999999999999999999999999999999999999999999999999999999999999864 35889
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHh-ccCcccccccEEEecc
Q 010876 170 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDE 248 (498)
Q Consensus 170 lvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~-~~~~~l~~~~~vI~DE 248 (498)
||++||||||.|+.+++..++...++++.++.||.....+...+.+.++|+|+||++|++++. .+.+++..++++|+||
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 999999999999999999999999999999999999999999999999999999999999998 5678899999999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHH
Q 010876 249 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 328 (498)
Q Consensus 249 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 328 (498)
||+++++.|...+.+|++.++..+|++++|||++..+.++.+..+.+|..+...... ..-..+.|.+..++...|...|
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhH
Confidence 999999999999999999999999999999999999999999999999988776654 5566788888899999999999
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCC
Q 010876 329 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK 408 (498)
Q Consensus 329 ~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~ 408 (498)
+.++++.. +..+||||++...++.++-.|+..|+.+..+||.|++..|.-.++.|++|.++||||||+++||+|+|.|+
T Consensus 292 V~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd 370 (476)
T KOG0330|consen 292 VYLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVD 370 (476)
T ss_pred HHHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCce
Confidence 99999864 47899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCC--CCH
Q 010876 409 YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQK--VSP 466 (498)
Q Consensus 409 ~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~ 466 (498)
+|||||.|.+..+|+||+||++|.|+.|.++.|++..|.+.+..|...+++.... ++.
T Consensus 371 ~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 371 VVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred EEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 9999999999999999999999999999999999999999999999999888765 444
No 9
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-69 Score=519.77 Aligned_cols=408 Identities=43% Similarity=0.712 Sum_probs=374.6
Q ss_pred HHHHHHHHHhcCce--EecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHH
Q 010876 69 EREVEEYRQQREIT--VEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 69 ~~e~~~~~~~~~i~--~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~ 146 (498)
.+...++.+++.+. +.+.++|.++..|.+..+.+.+..+++..++..|+|+|+.+||.+..|+++++||+||||||.+
T Consensus 48 ~~~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~a 127 (482)
T KOG0335|consen 48 ISTGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAA 127 (482)
T ss_pred cchhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHH
Confidence 34455566665554 5788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCC-----CCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEE
Q 010876 147 YLLPAIVHVNAQPFLAP-----GDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVI 221 (498)
Q Consensus 147 ~~l~~l~~~~~~~~~~~-----~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi 221 (498)
|++|++.++.+...... ...|.+||++||||||.|++++.++|...+.++++..||+.....+.+.+.++|+|+|
T Consensus 128 FLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlv 207 (482)
T KOG0335|consen 128 FLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILV 207 (482)
T ss_pred HHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEE
Confidence 99999999988654321 1258999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHhccCcccccccEEEeccchhhhc-CCcHHHHHHHHHhcC----CCCcEEEEcCCCcHHHHHHHHHHhcC-
Q 010876 222 ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIR----PDRQTLYWSATWPKEVEHLARQYLYN- 295 (498)
Q Consensus 222 ~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~-~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~- 295 (498)
+||++|.++++.+.+.+.+++++||||||+|++ ++|.+.+++|+.... ...|.+|||||+|.+++.++..++.+
T Consensus 208 aTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~ 287 (482)
T KOG0335|consen 208 ATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDN 287 (482)
T ss_pred ecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhcc
Confidence 999999999999999999999999999999999 999999999998875 37899999999999999999999887
Q ss_pred CeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhc---CCC-----eEEEEeCCcccHHHHHHHHhhCCCCeEE
Q 010876 296 PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGS-----RILIFMDTKKGCDQITRQLRMDGWPALS 367 (498)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~-----~vlIf~~s~~~~~~l~~~L~~~~~~~~~ 367 (498)
++.+.+.... ....++.|.+..+.+.+|...|+++|.... ... +++|||.+++.|+.++..|...++++..
T Consensus 288 yi~laV~rvg-~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~s 366 (482)
T KOG0335|consen 288 YIFLAVGRVG-STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKS 366 (482)
T ss_pred ceEEEEeeec-cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCcee
Confidence 6666666655 667889999999999999999999998654 233 8999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 368 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 368 lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
+||+.++.+|.+.++.|++|++.+||||+++++|+|||+|++||+||+|.+..+|+|||||+||.|+.|.++.|++..+.
T Consensus 367 Ihg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~ 446 (482)
T KOG0335|consen 367 IHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQ 446 (482)
T ss_pred ecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHhhhcCCCC
Q 010876 448 RFAKELITILEEAGQKVSPELAAMGRGAPP 477 (498)
Q Consensus 448 ~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~ 477 (498)
...+.|.++|.++++++|++|.+|+.....
T Consensus 447 ~i~~~L~~~l~ea~q~vP~wl~~~~~~~~~ 476 (482)
T KOG0335|consen 447 NIAKALVEILTEANQEVPQWLSELSREREL 476 (482)
T ss_pred hhHHHHHHHHHHhcccCcHHHHhhhhhccc
Confidence 999999999999999999999997766533
No 10
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-69 Score=555.38 Aligned_cols=430 Identities=47% Similarity=0.796 Sum_probs=410.8
Q ss_pred CCCCCCCcccccccccCccccCCCHHHHHHHHHhcC-ceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHH
Q 010876 45 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQRE-ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQG 123 (498)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-i~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~ 123 (498)
......++|.++||.+.+++..++..+++.|+.... +.+.+...|+|+.+|.+.+++..++..+++.+|..|+|+|.+|
T Consensus 316 ~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qA 395 (997)
T KOG0334|consen 316 HSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQA 395 (997)
T ss_pred cccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhh
Confidence 456678999999999999999999999999999977 9999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 010876 124 WPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG 203 (498)
Q Consensus 124 i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~ 203 (498)
||++++|+++|.+|.||||||++|++|++.|+..++....++||.+||++||++||.|+.+++++|...++++++++||+
T Consensus 396 iP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg 475 (997)
T KOG0334|consen 396 IPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGG 475 (997)
T ss_pred cchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHhcCCcEEEcChHHHHHHHhcc---CcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCC
Q 010876 204 VPKGPQVRDLQKGVEIVIATPGRLIDMLESH---NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 280 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~---~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 280 (498)
....+++.++.+++.|+||||+++++++-.. ..++.++.++|+||+|+|.+++|.+++..|+..+++.+|++++|||
T Consensus 476 ~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSat 555 (997)
T KOG0334|consen 476 SGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSAT 555 (997)
T ss_pred ccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhh
Confidence 9999999999999999999999999987643 3467777899999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecc-hhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHh
Q 010876 281 WPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR 359 (498)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~ 359 (498)
+|..+..+++..+..|+.+.++... .....+.+.+.++. ..+|+..|.++|.+.....++||||.....|+.|.+.|.
T Consensus 556 fpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~ 634 (997)
T KOG0334|consen 556 FPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQ 634 (997)
T ss_pred hhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHH
Confidence 9999999999999999998887554 67888999999998 899999999999999889999999999999999999999
Q ss_pred hCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEE
Q 010876 360 MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY 439 (498)
Q Consensus 360 ~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~ 439 (498)
+.++++..+||+.++.+|..++++|+++.+.+||||+++++|+|++++.+|||||+|...++|+||.||+||.|++|.|+
T Consensus 635 ~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~Av 714 (997)
T KOG0334|consen 635 KAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAV 714 (997)
T ss_pred hcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHHHHHhCCCCCHHHHhhhcCC
Q 010876 440 TFFTAANARFAKELITILEEAGQKVSPELAAMGRGA 475 (498)
Q Consensus 440 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 475 (498)
+|+++++.+++.+|.+.+..+++.+|..|..|+...
T Consensus 715 tFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f 750 (997)
T KOG0334|consen 715 TFITPDQLKYAGDLCKALELSKQPVPKLLQALSERF 750 (997)
T ss_pred EEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 999999999999999999999999999999987543
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-66 Score=530.30 Aligned_cols=372 Identities=44% Similarity=0.711 Sum_probs=341.4
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010876 93 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 172 (498)
Q Consensus 93 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl 172 (498)
..|+++++++.+++.+.+.||..|+|+|.++||.++.|+|+++.|+||||||++|++|+++++.... .....+ +||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--ERKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--ccCCCc-eEEE
Confidence 6799999999999999999999999999999999999999999999999999999999999977431 111112 9999
Q ss_pred cCcHHHHHHHHHHHHHhcCCC-CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh
Q 010876 173 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 251 (498)
Q Consensus 173 ~P~~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~ 251 (498)
+||||||.|+++.+.+++... ++++.+++||.+...+...+..+++|||+||+++++++.+..+++..+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999999999999988899999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCc-ccccceeeeEeecchhh-hHHHHH
Q 010876 252 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL-KANHAIRQHVDIVSESQ-KYNKLV 329 (498)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-k~~~l~ 329 (498)
|++++|...++.|+..++.+.|+++||||+|..+..+++.++.+|..+.+..... .....+.|.+..+.... |...|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888774432 36778888888888766 999999
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCE
Q 010876 330 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 409 (498)
Q Consensus 330 ~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~ 409 (498)
.++...... ++||||+++..|+.++..|...|+++..+||++++++|..+++.|++|+.+||||||+++||||||++++
T Consensus 266 ~ll~~~~~~-~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDEDEG-RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCCCC-eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 998876443 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhcccccCCCcceEEEEeccc-cHHHHHHHHHHHHHh---CCCCCHHH
Q 010876 410 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEA---GQKVSPEL 468 (498)
Q Consensus 410 VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~---~~~~~~~l 468 (498)
|||||+|.+++.|+||+||+||+|+.|.+++|+++. +...+..+.+.+... ...+|...
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~ 407 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDE 407 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcch
Confidence 999999999999999999999999999999999986 888899999988665 33555443
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.6e-66 Score=523.58 Aligned_cols=365 Identities=38% Similarity=0.683 Sum_probs=329.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCC-CCCCCEEEEE
Q 010876 94 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA-PGDGPIVLVL 172 (498)
Q Consensus 94 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vlvl 172 (498)
+|++++|++.+++.|.+.+|.+||++|.++|+.++.++|+++++|||||||++|++|+++.+....... ....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999987643221 1234589999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhh
Q 010876 173 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 252 (498)
Q Consensus 173 ~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~ 252 (498)
+||++||.|+.+.+..+....++.+..++|+.....+...+...++|+|+||++|++++......++++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988899999999999888887788888999999999999999888888999999999999999
Q ss_pred hcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHH
Q 010876 253 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLL 332 (498)
Q Consensus 253 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 332 (498)
++++|...++.++..++...|++++|||+++++..++..++.++..+.+.... .....+.+.+..+....+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877665433 33455667777777777776666666
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEE
Q 010876 333 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 412 (498)
Q Consensus 333 ~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~ 412 (498)
... ...++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 241 ~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 241 GKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred HcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 543 3458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHh
Q 010876 413 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 460 (498)
Q Consensus 413 ~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 460 (498)
|++|.++.+|+||+||+||.|..|.+++|++.++...+..+.+.+...
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred eCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999888877654
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-66 Score=455.76 Aligned_cols=379 Identities=34% Similarity=0.598 Sum_probs=351.4
Q ss_pred CCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCC
Q 010876 86 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 165 (498)
Q Consensus 86 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 165 (498)
...-+++.+|+++++.+.+++.+...||.+|..+|+.|++.+++|+|+|+++..|+|||.+|.+.+++.+.-. .+
T Consensus 20 s~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r 94 (400)
T KOG0328|consen 20 SEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VR 94 (400)
T ss_pred ccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cc
Confidence 3455668899999999999999999999999999999999999999999999999999999888777665542 23
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEE
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLV 245 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI 245 (498)
...+||++||||||.|+.+.+..++...++.+..+.||.+..+.++.+..+.+++.+||+++.+++.+..+..+.++++|
T Consensus 95 ~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlV 174 (400)
T KOG0328|consen 95 ETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLV 174 (400)
T ss_pred eeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhh-h
Q 010876 246 LDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQ-K 324 (498)
Q Consensus 246 ~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k 324 (498)
+||+|.|++.+|..++-.+.+.++++.|++++|||+|.++.+...+|+.+|+.+.+...++ ..+.+++++..+..++ |
T Consensus 175 LDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdel-tlEgIKqf~v~ve~EewK 253 (400)
T KOG0328|consen 175 LDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDEL-TLEGIKQFFVAVEKEEWK 253 (400)
T ss_pred eccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCC-chhhhhhheeeechhhhh
Confidence 9999999999999999999999999999999999999999999999999999999888774 4555777666665554 9
Q ss_pred HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 010876 325 YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 404 (498)
Q Consensus 325 ~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 404 (498)
++.|.++...+.- .+++||||++..++.|.+.|++.++.+...||+|.+++|+.++++|++|+.+|||+|++.++|+|+
T Consensus 254 fdtLcdLYd~LtI-tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv 332 (400)
T KOG0328|consen 254 FDTLCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV 332 (400)
T ss_pred HhHHHHHhhhheh-heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc
Confidence 9999998887655 379999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHhh
Q 010876 405 KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 471 (498)
Q Consensus 405 ~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 471 (498)
|.|++|||||+|.+.+.|+||+||.||.|++|.++-|+..+|.+.++++.+.+.-+..++|..+.++
T Consensus 333 ~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 333 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred ceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999988776553
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-63 Score=514.02 Aligned_cols=366 Identities=39% Similarity=0.633 Sum_probs=327.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCC--CCCCCEEE
Q 010876 93 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPIVL 170 (498)
Q Consensus 93 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~vl 170 (498)
.+|++++|++.+++.|.+.||..|+|+|.++||.+++|+|+++++|||||||++|++|++.++...+... ....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999999887543211 22357899
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc-CcccccccEEEeccc
Q 010876 171 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEA 249 (498)
Q Consensus 171 vl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~-~~~l~~~~~vI~DE~ 249 (498)
||+||++||.|+++.+.+++...++++..++|+.....+...+..+++|+|+||++|++++... .+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999999999999999999888777778888999999999999998764 467889999999999
Q ss_pred hhhhcCCcHHHHHHHHHhcCC--CCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHH
Q 010876 250 DRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 327 (498)
Q Consensus 250 h~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 327 (498)
|++++++|...+..++..++. ..|+++||||++..+..+...++.++..+.+.... .....+.+.+.......|...
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~ 247 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQTL 247 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHHH
Confidence 999999999999999998875 78999999999999999999999888777665543 334456677777777888888
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC
Q 010876 328 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 407 (498)
Q Consensus 328 l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v 407 (498)
+..++... ...++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++
T Consensus 248 L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 248 LLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 88877653 45689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHh
Q 010876 408 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 460 (498)
Q Consensus 408 ~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 460 (498)
++||+||+|.+.++|+||+||+||.|..|.|++|+++.+...+.++.+.+...
T Consensus 327 ~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 327 KYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred CEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999998888888887776543
No 15
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-65 Score=481.42 Aligned_cols=362 Identities=36% Similarity=0.554 Sum_probs=332.4
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 171 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlv 171 (498)
..+|.+++|+.++++++...||..|||+|..+||.++-|+|++.||.||||||.+|++|+|..++..+.- -...+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEE
Confidence 3589999999999999999999999999999999999999999999999999999999999999886532 34678999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc-cCcccccccEEEeccch
Q 010876 172 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEAD 250 (498)
Q Consensus 172 l~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~-~~~~l~~~~~vI~DE~h 250 (498)
|||||+||.|++...+++..++++.+....||.+...|...++..+||||+||++|.+++.+ ..+++.++.++|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 47789999999999999
Q ss_pred hhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeee-Eeecc--hhhhHHH
Q 010876 251 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQH-VDIVS--ESQKYNK 327 (498)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~k~~~ 327 (498)
+|++.+|..++..|+..++.++|+++||||+..++.+++.-.+..|+.+.+...... ...+.|. +.+.+ +.++...
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~-a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDT-APKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcccc-chhhhHHHheeccccccccHHH
Confidence 999999999999999999999999999999999999999999999999999887643 3344443 33332 3456667
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC
Q 010876 328 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 407 (498)
Q Consensus 328 l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v 407 (498)
+..++..... .+++||+.+++.|..+.-.|--.|+++.-+||.++|.+|-..++.|++.+++|||||+++++|+||+.|
T Consensus 417 l~~l~~rtf~-~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTFQ-DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhcc-cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 7777777654 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHH
Q 010876 408 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 457 (498)
Q Consensus 408 ~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l 457 (498)
.+||||.+|.+...|+||+||+.|+|+.|.+++|+.+++.++++.+++.-
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999998888764
No 16
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.8e-63 Score=499.60 Aligned_cols=367 Identities=38% Similarity=0.582 Sum_probs=329.2
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCC--CCCCCEE
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPIV 169 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~v 169 (498)
..+|+++++++.+++.+...||..|+|+|.++||.+++|+|++++||||||||++|++|++..+...+... ...++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 36899999999999999999999999999999999999999999999999999999999999987644321 2246889
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccc
Q 010876 170 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 249 (498)
Q Consensus 170 lvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~ 249 (498)
|||+||++||.|+++.+..+....++++..++|+.....+...+..+++|+|+||++|.+++......+.++++||+|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999999999999999998887777788888999999999999999888888999999999999
Q ss_pred hhhhcCCcHHHHHHHHHhcCC--CCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHH
Q 010876 250 DRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 327 (498)
Q Consensus 250 h~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 327 (498)
|++++++|...+..++..++. ..+.+++|||++..+..+...++.+|..+.+.... .....+.+.+.......|...
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~ 245 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRL 245 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHHH
Confidence 999999999999999988874 56689999999999999998888888877765443 334456666666677788888
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC
Q 010876 328 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 407 (498)
Q Consensus 328 l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v 407 (498)
+..++... ...++||||+++..|+.++..|...++++..+||++++.+|..+++.|++|+++|||||+++++|||+|++
T Consensus 246 l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 246 LQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 88887664 34689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHh
Q 010876 408 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 460 (498)
Q Consensus 408 ~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 460 (498)
++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+...
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999888888877766544
No 17
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-64 Score=450.75 Aligned_cols=369 Identities=30% Similarity=0.524 Sum_probs=347.9
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 171 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlv 171 (498)
-..|+++.|...++..+.+.||..|.|+|.++||.++.|+|+++.|..|+|||.+|++|++..+... ...-..+|
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~i 158 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAII 158 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEE
Confidence 3568899999999999999999999999999999999999999999999999999999999987753 23556899
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh
Q 010876 172 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 251 (498)
Q Consensus 172 l~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~ 251 (498)
++|||+||.|+.+.+.++++..++++.+.+||++..+.+-.+....+++|+||++++++..++.-.++++.++|+||||.
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK 238 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHH
Q 010876 252 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 331 (498)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 331 (498)
+++..|.+.++.++..+++.+|++++|||+|-.+..+..+++.+|+.+....+ .....+.|++..+.+..|...|..+
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999998876553 5677899999999999999999999
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEE
Q 010876 332 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 411 (498)
Q Consensus 332 l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI 411 (498)
+..+.-+ +.||||||...++.+++.+.+.|+.+.++|+.|.++.|..++..|++|.++.||||+.+.+|||++++++||
T Consensus 317 fskLqIN-QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI 395 (459)
T KOG0326|consen 317 FSKLQIN-QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI 395 (459)
T ss_pred HHHhccc-ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE
Confidence 9887665 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHH
Q 010876 412 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPEL 468 (498)
Q Consensus 412 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l 468 (498)
|||.|.++++|+||+||.||.|..|.++.+++.+|...+.++..-|...-..+|+..
T Consensus 396 NFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 396 NFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred ecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 999999999999999999999999999999999999999999988888888888654
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-63 Score=447.65 Aligned_cols=367 Identities=35% Similarity=0.512 Sum_probs=335.3
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 171 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlv 171 (498)
...|+.+++++|+.+.++..++.+|||+|..|||.++.|+|+|.+|.||||||++|.+|+++.+.+++ .+-.++|
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999865 5788999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc----CcccccccEEEec
Q 010876 172 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLD 247 (498)
Q Consensus 172 l~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~----~~~l~~~~~vI~D 247 (498)
++|||+||.|+.++|..+++..++++.+++||...-.+...+...+++||+||+++.+++... .+.++++.++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 999999999999999999999999999999999988888999999999999999999998765 3457899999999
Q ss_pred cchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEE-cCCCcccccceeeeEeecchhhhHH
Q 010876 248 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII-GSPDLKANHAIRQHVDIVSESQKYN 326 (498)
Q Consensus 248 E~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~ 326 (498)
|||++++..|...++-+...++..+|.++||||+.+.+..+...-...++.+.. ..........+.+.+..++...|..
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 999999999999999999999999999999999988887776555544322222 2345567778888888999999999
Q ss_pred HHHHHHHhhcC--CCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 010876 327 KLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 404 (498)
Q Consensus 327 ~l~~~l~~~~~--~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 404 (498)
.++.+|....+ .+.++||+++..+|+.|+..|+...+.+..+|+.|++.+|-..+.+|+++..+||||||++++|+||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 99999987665 6689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCC
Q 010876 405 KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQK 463 (498)
Q Consensus 405 ~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 463 (498)
|.|++|||+|.|.++.+|+||+||+.|+|+.|.++.|+++.|.+.+..+.+.+..+-.+
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e 379 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTE 379 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999998888877665443
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.5e-61 Score=493.92 Aligned_cols=359 Identities=39% Similarity=0.622 Sum_probs=328.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010876 93 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 172 (498)
Q Consensus 93 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl 172 (498)
.+|+++++++.+++.+.+.||.+|+|+|.+||+.+++++|++++||||||||++|++|++.++.... ..+++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-----~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-----FRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-----CCceEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999886421 25679999
Q ss_pred cCcHHHHHHHHHHHHHhcCCC-CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh
Q 010876 173 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 251 (498)
Q Consensus 173 ~P~~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~ 251 (498)
+||++||.|+.++++++.... ++++..++|+.+...+...+..+++|+|+||++|.+++.+....+.++++||+||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999887644 6889999999998888888888999999999999999998888899999999999999
Q ss_pred hhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHH
Q 010876 252 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 331 (498)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 331 (498)
+++++|...+..++..+++..|++++|||+|+.+..++..++.++..+.+.... ....+.+.+..+....|...+..+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~l 236 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRL 236 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888776543 234477777777777888888888
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEE
Q 010876 332 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 411 (498)
Q Consensus 332 l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI 411 (498)
+... ...++||||+++..|+.+++.|...++.+..+||++++.+|+.+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 237 l~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 237 LLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 8764 345899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 010876 412 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 459 (498)
Q Consensus 412 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 459 (498)
+||+|.+...|+||+||+||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 316 ~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999988877777776644
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.2e-61 Score=501.24 Aligned_cols=358 Identities=39% Similarity=0.640 Sum_probs=324.0
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 171 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlv 171 (498)
..+|.+++|++.++++|.+.||.+|+|+|.++|+.++.++++|++||||+|||++|++|++..+... ...+++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3569999999999999999999999999999999999999999999999999999999999887642 23678999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCC-CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccch
Q 010876 172 LAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 250 (498)
Q Consensus 172 l~P~~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h 250 (498)
|+||++||.|+++.+.++.... ++.+..++|+.....+...+..+++|||+||++|.+++.+....++++.+|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999887554 688999999998888888888889999999999999999888889999999999999
Q ss_pred hhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHH
Q 010876 251 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 330 (498)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 330 (498)
.|++++|...+..++..++...|+++||||+|..+..+.+.++.++..+.+.... .....+.+.+..+....|...+..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887766544 334456666666777788888888
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEE
Q 010876 331 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 410 (498)
Q Consensus 331 ~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 410 (498)
++... ...++||||+++..++.++..|...++.+..+||++++.+|+.+++.|++|+++|||||+++++|||+|++++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 88754 34589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHH
Q 010876 411 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 456 (498)
Q Consensus 411 I~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 456 (498)
|+||+|.+.+.|+||+||+||.|+.|.+++|+++.+...+..+.+.
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~ 363 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998776555555443
No 21
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.4e-62 Score=461.93 Aligned_cols=363 Identities=36% Similarity=0.563 Sum_probs=331.8
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010876 91 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 170 (498)
Q Consensus 91 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 170 (498)
....|++..|++..+++++.+||..+|++|+..++.++.|+|+++.|.||+|||++|++|+++.+.+.++..+ .+-.+|
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vl 158 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVL 158 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEE
Confidence 3566888999999999999999999999999999999999999999999999999999999999998776554 577899
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCC-CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccC-cccccccEEEecc
Q 010876 171 VLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN-TNLRRVTYLVLDE 248 (498)
Q Consensus 171 vl~P~~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~-~~l~~~~~vI~DE 248 (498)
||||||+||.|++.+++++.... ++.+..+.||.......+.+.++++|+|+||++|.+++++.. +...+++++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999988877 899999999999988888898899999999999999999854 4456678999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcC-CeEEEEcCC-CcccccceeeeEeecchhhhHH
Q 010876 249 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYN-PYKVIIGSP-DLKANHAIRQHVDIVSESQKYN 326 (498)
Q Consensus 249 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~ 326 (498)
||++++++|...++.|+..++..+|.++||||.+.+++++++-.+.. +..+..... .......+.|.+.+++...++.
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99999999999999999999999999999999999999999987765 555554433 3345567788788888888889
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 010876 327 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 406 (498)
Q Consensus 327 ~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 406 (498)
.+..+|++.....++||||+|...+..+++.|+...++|..+||.++|..|..+...|++.+.-||||||+++||+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 99999999877789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHH
Q 010876 407 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 454 (498)
Q Consensus 407 v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 454 (498)
|++||+||+|.++++|+||+||+||.|..|.+++++.+.+..+++.|-
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999999999999999998887766655
No 22
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-61 Score=460.40 Aligned_cols=361 Identities=34% Similarity=0.541 Sum_probs=330.5
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEE
Q 010876 90 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 169 (498)
Q Consensus 90 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 169 (498)
..+..|.++++++..++.|+..+|..++.+|+++||.+++|+|++..|.||||||++|++|++.++...... ...|--+
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs-~~DGlGa 144 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS-PTDGLGA 144 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCC-CCCCcee
Confidence 346789999999999999999999999999999999999999999999999999999999999999876543 3457779
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc-cCcccccccEEEecc
Q 010876 170 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDE 248 (498)
Q Consensus 170 lvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~-~~~~l~~~~~vI~DE 248 (498)
|||+|||+||.|+++.+.+.+....+....+.||.........+ +.++|+||||++|+.++.. ..++..++.++|+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999999999999999999866555544 4589999999999998865 466788999999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCC-cccccceeeeEeecchhhhHHH
Q 010876 249 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD-LKANHAIRQHVDIVSESQKYNK 327 (498)
Q Consensus 249 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~ 327 (498)
||+|++|+|...+..|+..+++.+|+++||||....+.++++-.+.+|..+.+.... ...+..+.|.+.+++..+|+..
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~ 303 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDM 303 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHH
Confidence 999999999999999999999999999999999999999999999999998887544 5678889999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhh--CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC
Q 010876 328 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM--DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 405 (498)
Q Consensus 328 l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~--~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~ 405 (498)
|..+|..+.. .++|||+.|.+++..+++.+++ +|+++..+||.|+|..|..++..|...+.-||+||++++||+|+|
T Consensus 304 L~sFI~shlk-~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 304 LWSFIKSHLK-KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHhccc-cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 9999998754 5899999999999999999976 589999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccH-HHHHHH
Q 010876 406 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA-RFAKEL 453 (498)
Q Consensus 406 ~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~-~~~~~l 453 (498)
.|++||.+|+|.+.++|+||+||+.|....|.+++++++.+. .++..|
T Consensus 383 aVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~L 431 (758)
T KOG0343|consen 383 AVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKL 431 (758)
T ss_pred ccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHH
Confidence 999999999999999999999999999999999999999984 344333
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.7e-60 Score=480.10 Aligned_cols=364 Identities=36% Similarity=0.591 Sum_probs=324.7
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010876 94 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 173 (498)
Q Consensus 94 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~ 173 (498)
+|+++++++.+++.+.+.||.+|+++|.++|+.++.++|+++++|||+|||++|++|+++++...+. .....+++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-RKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCceEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999876432 122357899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhh
Q 010876 174 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 253 (498)
Q Consensus 174 P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~ 253 (498)
||++||.|+++.+..+....++.+..++|+.....+...+..+++|+|+||++|.+++....+.+.++++|||||||+++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999999999999999998888877778889999999999999999888889999999999999999
Q ss_pred cCCcHHHHHHHHHhcCCCCcEEEEcCCCcH-HHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecc-hhhhHHHHHHH
Q 010876 254 DMGFEPQIKKILSQIRPDRQTLYWSATWPK-EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKL 331 (498)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~ 331 (498)
+++|...+..+...++...|+++||||++. .+..+...++.++..+...... .....+.+.+..+. ...+...+..+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHH
Confidence 999999999999999889999999999985 5788888888888877665443 33444555555554 35666777776
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEE
Q 010876 332 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 411 (498)
Q Consensus 332 l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI 411 (498)
+... ...++||||+++.+|+.++..|+..++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||
T Consensus 240 ~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 240 LKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred HhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 6542 446899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHh
Q 010876 412 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 460 (498)
Q Consensus 412 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 460 (498)
+||+|.+...|+||+||+||.|..|.+++|++..|...+..+.+++.+.
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999988888888776543
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.1e-59 Score=477.11 Aligned_cols=378 Identities=37% Similarity=0.559 Sum_probs=332.2
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCC--CCCCCE
Q 010876 91 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPI 168 (498)
Q Consensus 91 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~ 168 (498)
...+|.++++++.+.+.|.+.||..|+++|.++|+.+++|+|+|+++|||||||++|++|++..+...+... ....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 346789999999999999999999999999999999999999999999999999999999999987653211 112578
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHh-cCCcEEEcChHHHHHHHhccCcccccccEEEec
Q 010876 169 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 247 (498)
Q Consensus 169 vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~D 247 (498)
+|||+||++||.|+.+.+..+....++.+..++|+.....+.+.+. ..++|+|+||++|.+++.+....++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999999999999888999999999987777666664 468999999999999988888889999999999
Q ss_pred cchhhhcCCcHHHHHHHHHhcCC--CCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhH
Q 010876 248 EADRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY 325 (498)
Q Consensus 248 E~h~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 325 (498)
|+|++.+++|...+..++..++. ..|++++|||++.++..++..++.++..+.+.... .....+.+.+..+...++.
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHH
Confidence 99999999999999999988853 67999999999999999999999998877665544 3334456666667777788
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC
Q 010876 326 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 405 (498)
Q Consensus 326 ~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~ 405 (498)
..+..++... ...++||||+++.+|+.+++.|...++.+..+||++++++|..+++.|++|+++|||||+++++|||+|
T Consensus 324 ~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 324 KLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 8888877653 345899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhC--CCCCHHHHh
Q 010876 406 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG--QKVSPELAA 470 (498)
Q Consensus 406 ~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~l~~ 470 (498)
++++||++++|.|..+|+||+||+||.|++|.+++|++++|...+..+.+++.... ...|.+|.+
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 99999999999999999999999999999999999999998888888888876664 234555554
No 25
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-60 Score=443.05 Aligned_cols=354 Identities=34% Similarity=0.553 Sum_probs=314.6
Q ss_pred CCcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010876 93 KSFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 170 (498)
Q Consensus 93 ~~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 170 (498)
.+|++++ |+++++.++...||...||+|..+||.++.++|+++.++||||||++|++|++..+.......+.....+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3567665 55999999999999999999999999999999999999999999999999999999543322222224589
Q ss_pred EEcCcHHHHHHHHHHHHHhcCC-CCceEEEEeCCCCCchhHHHHh-cCCcEEEcChHHHHHHHhccC--cccccccEEEe
Q 010876 171 VLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHN--TNLRRVTYLVL 246 (498)
Q Consensus 171 vl~P~~~La~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivi~T~~~l~~~l~~~~--~~l~~~~~vI~ 246 (498)
||+||||||.|+.+.+..|... .++.+.++.||......+..+. .++.|+|+||++|.+++++.. +++.++.++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999887655 6788999999988877776664 467899999999999998854 44559999999
Q ss_pred ccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCc-ccccceeeeEeecchhhhH
Q 010876 247 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL-KANHAIRQHVDIVSESQKY 325 (498)
Q Consensus 247 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~ 325 (498)
||||++++++|...+..|++.+++++++-+||||...++.++.+..+.+|..+.+..... ..+..+...+..+....|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 999999999999999999999999999999999999999999999999999998877653 2455677788889999999
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCC
Q 010876 326 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 403 (498)
Q Consensus 326 ~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gld 403 (498)
..++.+|... ..+++|||.+|...++.....|... ..++..+||.|.+..|..++..|++..-.+|+|||++++|+|
T Consensus 244 ~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 244 SQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 9999999884 4569999999999999999888754 678999999999999999999999988889999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 404 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 404 i~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
||++++||+||+|.+++.|+||+||++|.|+.|.+++|+.+.+.
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~ 366 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREE 366 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHH
Confidence 99999999999999999999999999999999999999999543
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-59 Score=437.10 Aligned_cols=368 Identities=31% Similarity=0.490 Sum_probs=335.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCC-CCCCCCEEEE
Q 010876 93 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-APGDGPIVLV 171 (498)
Q Consensus 93 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~vlv 171 (498)
.+|++++|++.+++++.+.||.+||-+|+.|||.++.|+|+++.|.||||||.+|++|+++.+...... ....++..+|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999887655 4556899999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCC--ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccC-cccccccEEEecc
Q 010876 172 LAPTRELAVQIQQESTKFGASSK--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN-TNLRRVTYLVLDE 248 (498)
Q Consensus 172 l~P~~~La~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~-~~l~~~~~vI~DE 248 (498)
++||+|||.|++..+.++...+. ++++-+..+.+.......+...++|||+||+++..++..+. ..+..+.++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999988754433 55555555555555556677789999999999999998876 6788899999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHH
Q 010876 249 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 328 (498)
Q Consensus 249 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 328 (498)
||.++..+|...+.++.+.+++..|.++||||+++++..+.+.++.+|+.+.+...++.....+.|+...|.+.+|+..+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc-----------
Q 010876 329 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV----------- 397 (498)
Q Consensus 329 ~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~----------- 397 (498)
+.+++...-.+++|||+|+++.|..|.-.|++.|++.++++|.++...|..+++.|+.|-++++||||.
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 999988767789999999999999999999999999999999999999999999999999999999981
Q ss_pred ------------------------ccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHH
Q 010876 398 ------------------------AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 453 (498)
Q Consensus 398 ------------------------~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 453 (498)
.+||||+.+|.+|+|||+|.+...|+||+||++|.+++|.+++|+.+.+..-...|
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHH
Confidence 26899999999999999999999999999999999999999999999887755666
Q ss_pred HHHHHHh
Q 010876 454 ITILEEA 460 (498)
Q Consensus 454 ~~~l~~~ 460 (498)
..++...
T Consensus 419 e~~~~d~ 425 (569)
T KOG0346|consen 419 ESILKDE 425 (569)
T ss_pred HHHHhhH
Confidence 6655543
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.3e-57 Score=459.17 Aligned_cols=368 Identities=33% Similarity=0.592 Sum_probs=322.9
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 171 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlv 171 (498)
..+|+++++++.+.+.+.+.+|.+|+|+|.++|+.++.++++++++|||||||++|++|++..+... ..++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999887532 23678999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh
Q 010876 172 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 251 (498)
Q Consensus 172 l~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~ 251 (498)
++|+++|+.|+.+.+..++....+.+..++|+.........+..+++|+|+||++|.+++.+....+.++++||+||+|+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 99999999999999999988888888888898887777777778889999999999999988878899999999999999
Q ss_pred hhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecch-hhhHHHHHH
Q 010876 252 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-SQKYNKLVK 330 (498)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~ 330 (498)
+.+.+|...+..++..+++..|++++|||+|+.+..+...++.++..+.+..... ....+.+.+..+.. ..+...+..
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988888766554432 23334444443333 345555666
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEE
Q 010876 331 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 410 (498)
Q Consensus 331 ~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 410 (498)
++... ...++||||+++++|+.+++.|+..++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++|
T Consensus 261 ~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~V 339 (401)
T PTZ00424 261 LYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLV 339 (401)
T ss_pred HHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEE
Confidence 55543 34589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCH
Q 010876 411 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSP 466 (498)
Q Consensus 411 I~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 466 (498)
|++++|.+..+|+||+||+||.|+.|.|++|+++++.+.+..+.+.+....++.++
T Consensus 340 I~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 340 INYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred EEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 99999999999999999999999999999999999988888887777655555543
No 28
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-58 Score=436.51 Aligned_cols=364 Identities=35% Similarity=0.561 Sum_probs=316.1
Q ss_pred cCCcccCCCCHHHHHHHH-HCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcC-CCCCCCCCCEE
Q 010876 92 VKSFRDVGFPDYVMQEIS-KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQ-PFLAPGDGPIV 169 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~-~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~-~~~~~~~~~~v 169 (498)
-..|..++|++.+.+.|+ .+++..||.+|.++||.+++|+|+++.++||||||++|++|+++.+... +.+.+..|+.+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 456889999999999997 5799999999999999999999999999999999999999999999764 44567789999
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCce-EEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc-cCcccccccEEEec
Q 010876 170 LVLAPTRELAVQIQQESTKFGASSKIK-STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLD 247 (498)
Q Consensus 170 lvl~P~~~La~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~-~~~~l~~~~~vI~D 247 (498)
||++||||||.|+++.+.++...+... ...+.||.........++++++|+|+||++|.|++.+ ..+.++++.|||||
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 999999999999999999987765544 4668888888888999999999999999999999987 46678899999999
Q ss_pred cchhhhcCCcHHHHHHHHHhcC-------------CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCC----------
Q 010876 248 EADRMLDMGFEPQIKKILSQIR-------------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP---------- 304 (498)
Q Consensus 248 E~h~~~~~~~~~~~~~i~~~~~-------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------- 304 (498)
|+|++++.+|...+..|++.+. +..|.+++|||+.+.+..++...+.||..+..+..
T Consensus 295 EaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a 374 (708)
T KOG0348|consen 295 EADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKA 374 (708)
T ss_pred chhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhh
Confidence 9999999999999999988762 24688999999999999999999999988772111
Q ss_pred --------------CcccccceeeeEeecchhhhHHHHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHhhC------
Q 010876 305 --------------DLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMD------ 361 (498)
Q Consensus 305 --------------~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~vlIf~~s~~~~~~l~~~L~~~------ 361 (498)
....+..+.|.+.+++..-++..|..+|.... ...++|||+.+.+.++.-+..|...
T Consensus 375 ~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e 454 (708)
T KOG0348|consen 375 VQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLE 454 (708)
T ss_pred hhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccc
Confidence 12334556777778888888888887776543 3458999999999998888877532
Q ss_pred ----------------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHh
Q 010876 362 ----------------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHR 425 (498)
Q Consensus 362 ----------------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr 425 (498)
+.++..+||+|+|++|..+++.|...+..||+|||+++||+|+|+|.+||.||+|.+.++|+||
T Consensus 455 ~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHR 534 (708)
T KOG0348|consen 455 GSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHR 534 (708)
T ss_pred cccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHH
Confidence 2456789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCcceEEEEeccccHHHHHHHHH
Q 010876 426 IGRTGRAGAKGTAYTFFTAANARFAKELIT 455 (498)
Q Consensus 426 ~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 455 (498)
+||+.|.|..|.+++|+.+.+.+++..|..
T Consensus 535 vGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 535 VGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred hhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 999999999999999999999886555444
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-56 Score=405.30 Aligned_cols=370 Identities=29% Similarity=0.492 Sum_probs=319.1
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010876 91 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 168 (498)
Q Consensus 91 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 168 (498)
...+|+++.|.+++++.+..++|..|+.+|..|+|.++.. +++|.++..|+|||.+|.+.+|.++... ...|.
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~PQ 162 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVPQ 162 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCCC
Confidence 4688999999999999999999999999999999999975 6899999999999999999999887653 24678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCC--CchhHHHHhcCCcEEEcChHHHHHHHhc-cCcccccccEEE
Q 010876 169 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP--KGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLV 245 (498)
Q Consensus 169 vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Ivi~T~~~l~~~l~~-~~~~l~~~~~vI 245 (498)
+++|+|+|+||.|..+.+.+.++..++......-+.. ....+ ..+|+|+||+.+.+++.. .-..+..++++|
T Consensus 163 ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i-----~eqIviGTPGtv~Dlm~klk~id~~kikvfV 237 (477)
T KOG0332|consen 163 CICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKL-----TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFV 237 (477)
T ss_pred ceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcc-----hhheeeCCCccHHHHHHHHHhhChhhceEEE
Confidence 9999999999999999999999998888777666551 11111 248999999999999877 677889999999
Q ss_pred eccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhh
Q 010876 246 LDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQK 324 (498)
Q Consensus 246 ~DE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 324 (498)
+|||+.|++. +|..+-..|...++++.|++++|||+...+..++.....++..+.+...++......+.++.+....+|
T Consensus 238 lDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K 317 (477)
T KOG0332|consen 238 LDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDK 317 (477)
T ss_pred ecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhH
Confidence 9999998874 588888899999999999999999999999999999999999999988886555444444555566789
Q ss_pred HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 010876 325 YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 404 (498)
Q Consensus 325 ~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 404 (498)
++.|.++...+.- ++.||||.++..|.+++..|...|+.+..+||+|.-++|..++++|+.|..+|||+|++++||+|+
T Consensus 318 ~~~l~~lyg~~ti-gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv 396 (477)
T KOG0332|consen 318 YQALVNLYGLLTI-GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDV 396 (477)
T ss_pred HHHHHHHHhhhhh-hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccccc
Confidence 9999996655433 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCC------ChhHHHHhhcccccCCCcceEEEEeccc-cHHHHHHHHHHHHHhC-CCCCHHHHhh
Q 010876 405 KDVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAG-QKVSPELAAM 471 (498)
Q Consensus 405 ~~v~~VI~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~-~~~~~~l~~~ 471 (498)
+.|++|||||+|. +++.|+||+||+||.|+.|.++.|++.. ..+.+..|.++..... ...|+.+.++
T Consensus 397 ~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 397 AQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred ceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 9999999999995 7899999999999999999999998865 5567777777774443 3344444443
No 30
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-56 Score=430.38 Aligned_cols=398 Identities=34% Similarity=0.513 Sum_probs=350.6
Q ss_pred HHHhcCceEecCCCCCCcCCcccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHH
Q 010876 75 YRQQREITVEGRDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLP 150 (498)
Q Consensus 75 ~~~~~~i~~~~~~~~~~~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~ 150 (498)
.++...+.+.|..+|+|+.+|.++ .+...++..+...+|..|+|+|.+|+|.++.++++++|+|||+|||++|.+|
T Consensus 114 ~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~P 193 (593)
T KOG0344|consen 114 IRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLP 193 (593)
T ss_pred chhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhH
Confidence 344467888999999999999984 6888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc--CCCCceEEEEeCCCCCchh-HHHHhcCCcEEEcChHHH
Q 010876 151 AIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG--ASSKIKSTCIYGGVPKGPQ-VRDLQKGVEIVIATPGRL 227 (498)
Q Consensus 151 ~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ivi~T~~~l 227 (498)
++.++..........+-+++|+.|+++||.|++.++.++. .....+...+.......+. .......++|+|.||-++
T Consensus 194 il~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri 273 (593)
T KOG0344|consen 194 ILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRI 273 (593)
T ss_pred HHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHH
Confidence 9999988665555668899999999999999999999998 5665555544443222221 222234579999999999
Q ss_pred HHHHhccC--cccccccEEEeccchhhhcC-CcHHHHHHHHHhcC-CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcC
Q 010876 228 IDMLESHN--TNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 303 (498)
Q Consensus 228 ~~~l~~~~--~~l~~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 303 (498)
..++.... .+++.+.++|+||+|++.+. .|..++..|++.+. ++..+-+||||.+..++++++....++..+.++.
T Consensus 274 ~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~ 353 (593)
T KOG0344|consen 274 VGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGL 353 (593)
T ss_pred HHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEec
Confidence 99988765 67899999999999999998 89999999988765 6778889999999999999999999999999988
Q ss_pred CCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHH-hhCCCCeEEecCCCCHHHHHHHHH
Q 010876 304 PDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL-RMDGWPALSIHGDKSQAERDWVLS 382 (498)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L-~~~~~~~~~lh~~~~~~~r~~~~~ 382 (498)
.+.......+..+....+..|...+.+++....+ .++|||+++++.|.+|...| ...++.+.++||+.++.+|+++++
T Consensus 354 ~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~-PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 354 RNSANETVDQELVFCGSEKGKLLALRQLVASGFK-PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred chhHhhhhhhhheeeecchhHHHHHHHHHhccCC-CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHH
Confidence 7754443344456667788899999999988644 48999999999999999999 677899999999999999999999
Q ss_pred HHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCC
Q 010876 383 EFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 462 (498)
Q Consensus 383 ~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 462 (498)
+|+.|++.|||||+++++|+|+.+++.|||||.|.+...|+||+||+||+|+.|.+++||+..|.+.++.+.+.+++.|-
T Consensus 433 ~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~ 512 (593)
T KOG0344|consen 433 RFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGC 512 (593)
T ss_pred HHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhhhc
Q 010876 463 KVSPELAAMGR 473 (498)
Q Consensus 463 ~~~~~l~~~~~ 473 (498)
++|+++..|..
T Consensus 513 evpe~~m~~~k 523 (593)
T KOG0344|consen 513 EVPEKIMGIKK 523 (593)
T ss_pred cchHHHHhhhh
Confidence 99999988874
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-56 Score=423.62 Aligned_cols=371 Identities=34% Similarity=0.486 Sum_probs=305.7
Q ss_pred CCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC-CcEEEEcCCCchHHHHHHHHHHHHHhcCCCC-----
Q 010876 88 VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFL----- 161 (498)
Q Consensus 88 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~----- 161 (498)
.+..+..|..+.+|..++.+|..+||..|+++|.-.+|.+..| .|++..|.||||||++|-+|++..+.+....
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3445677999999999999999999999999999999999999 6999999999999999999999955442211
Q ss_pred ---CCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCc--
Q 010876 162 ---APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-- 236 (498)
Q Consensus 162 ---~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~-- 236 (498)
.....+..||++|||+||.|+.+.+......+++++..++||.....|.+.+...++|||+||++|+.++..+..
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 112234599999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred -ccccccEEEeccchhhhcCCcHHHHHHHHHhcC-----CCCcEEEEcCCCcHHH---------------------HHHH
Q 010876 237 -NLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-----PDRQTLYWSATWPKEV---------------------EHLA 289 (498)
Q Consensus 237 -~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SAT~~~~~---------------------~~~~ 289 (498)
++.++.++|+||+|+|+..++...+..++..+. ..+|++.||||+.-.. +.++
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 577889999999999999998888888887764 5689999999975322 2222
Q ss_pred HHH--hcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEE
Q 010876 290 RQY--LYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 367 (498)
Q Consensus 290 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~ 367 (498)
+.. ...|..+...... .....+......|+..+|.-.|+.+|.. -.+++|||||++..+..|+-+|+..+++...
T Consensus 416 k~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 221 1223222222221 1222222222223333333333333333 2468999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 368 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 368 lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
+|+.|.|.+|-..+++|++..-.|||||++++||+|||+|.|||||-.|.+.+.|+||.||+.|++..|..++++.+.+.
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 010876 448 RFAKELITILEEAG 461 (498)
Q Consensus 448 ~~~~~l~~~l~~~~ 461 (498)
..+..|++-|+...
T Consensus 573 ~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 573 GPLKKLCKTLKKKE 586 (731)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999887764
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-54 Score=400.17 Aligned_cols=363 Identities=35% Similarity=0.569 Sum_probs=339.9
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 171 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlv 171 (498)
.-.|+.++|+..+++++.+.+|..|+|+|++.+|.++++++++..+-||||||.+|++|+++++.... ..+.++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 46799999999999999999999999999999999999999999999999999999999999998743 34778999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh
Q 010876 172 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 251 (498)
Q Consensus 172 l~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~ 251 (498)
++||++||.|..+.++.++...++++++++|+.+..++...+..+.|||++||+++..+.-...+.|+.+.||||||+++
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999998999999999999887766667899999999999999
Q ss_pred hhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHH
Q 010876 252 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 331 (498)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 331 (498)
+..++|.+++.+++..++.+.|+++||||+|..+.++++.-+.+|..+.+..+. .....++..+..+...+|...|+.+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998865544 5566667777788899999999999
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEE
Q 010876 332 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 411 (498)
Q Consensus 332 l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI 411 (498)
+.....+.+++|||.++.+++-+...|+..|+.+..++|.+++.-|..-+.+|+.++..+||.|+++++|+|||-.+.||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 99887777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 010876 412 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 459 (498)
Q Consensus 412 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 459 (498)
|||.|.+...|+||+||+.|.|+.|.+|.++.+++..++-+|.-++.+
T Consensus 335 nyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred cccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 999999999999999999999999999999999999888888776654
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-53 Score=393.04 Aligned_cols=369 Identities=34% Similarity=0.579 Sum_probs=336.6
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 171 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlv 171 (498)
+.+|++++|++.+++.+...||.+|+.+|+.||..+..|.|+++.+++|+|||.+|.+++++++... .....+|+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-----~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-----VKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-----hHHHHHHH
Confidence 4589999999999999999999999999999999999999999999999999999999999887432 23556999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH-HHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccch
Q 010876 172 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV-RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 250 (498)
Q Consensus 172 l~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h 250 (498)
++|+++||.|+.+....++...+.++..+.|+.....+. ......++|+++||+++.+++....+....++++|+||++
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 999999999999999999999999999888888776444 3344568999999999999999888878889999999999
Q ss_pred hhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHH
Q 010876 251 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 330 (498)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 330 (498)
.++..+|..++..+...++++.|++++|||.|.++....+.++.+|..+.+...++. ...+.|.+..+..++|...|.+
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHH
Confidence 999999999999999999999999999999999999999999999999998887744 6667777777777779999988
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEE
Q 010876 331 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 410 (498)
Q Consensus 331 ~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 410 (498)
+.. .-...+||||+++.++.+...|...++.+..+|++|.+.+|+.+++.|+.|..+|||+|+.+++|+|+..+..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 888 34579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHH
Q 010876 411 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELA 469 (498)
Q Consensus 411 I~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 469 (498)
|+|+.|...++|+||+||+||.|++|.++.|+++.+...+.++.++..-.-.+.|....
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~ 394 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFA 394 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchh
Confidence 99999999999999999999999999999999999999999999887766667776544
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.3e-52 Score=440.06 Aligned_cols=344 Identities=20% Similarity=0.276 Sum_probs=271.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 010876 99 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 178 (498)
Q Consensus 99 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~L 178 (498)
.+++.+.+.|.+.||.+|+++|.++|+.+++|+|+++++|||||||++|++|++..+... .+.++|||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 388999999999999999999999999999999999999999999999999999998763 25789999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc----CcccccccEEEeccchhhhc
Q 010876 179 AVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLDEADRMLD 254 (498)
Q Consensus 179 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~----~~~l~~~~~vI~DE~h~~~~ 254 (498)
|.|+.+.+.++. ..++++..+.|+.+ ..+...+...++|+|+||++|...+... ...++++++||+||+|.+.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 44677777766665 4444556677899999999987533221 12378999999999999876
Q ss_pred CCcHHHHHHHHHh-------cCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeec--------
Q 010876 255 MGFEPQIKKILSQ-------IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV-------- 319 (498)
Q Consensus 255 ~~~~~~~~~i~~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 319 (498)
. |+..+..++.. ...++|++++|||+++..+ ++..++..+..+. .... .........+...
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~-~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDG-SPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCC-CCcCceEEEEecCCccccccc
Confidence 3 67665555444 3467899999999998654 6777777775543 2211 1111111111100
Q ss_pred --------chhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC--------CCCeEEecCCCCHHHHHHHHHH
Q 010876 320 --------SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--------GWPALSIHGDKSQAERDWVLSE 383 (498)
Q Consensus 320 --------~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~--------~~~~~~lh~~~~~~~r~~~~~~ 383 (498)
....+...+..++. .+.++||||+|++.|+.++..|+.. +.++..+||++++++|..++++
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 01234444444444 3569999999999999999988753 5678899999999999999999
Q ss_pred HhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccc--cHHHHHHHHHHH
Q 010876 384 FKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA--NARFAKELITIL 457 (498)
Q Consensus 384 f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~--~~~~~~~l~~~l 457 (498)
|++|++++||||+++++||||+++++||++++|.+.++|+||+||+||.|+.|.++++...+ |..++....+++
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988643 433444444343
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.4e-52 Score=402.26 Aligned_cols=355 Identities=30% Similarity=0.471 Sum_probs=318.9
Q ss_pred cCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 010876 85 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 164 (498)
Q Consensus 85 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 164 (498)
++-.+.....|+++-|...++..|+..+|..|+++|..|||.++.+-|+|+++..|+|||++|.+.++..+... .
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-----~ 91 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-----S 91 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----c
Confidence 44456667789999999999999999999999999999999999999999999999999999988887766542 3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhcC-CCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccE
Q 010876 165 DGPIVLVLAPTRELAVQIQQESTKFGA-SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 243 (498)
Q Consensus 165 ~~~~vlvl~P~~~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~ 243 (498)
..+..+||+|||++|.|+.+.+.++++ ..+.++.++.||+.......++. .++|+|+||+++..+++.+.++.+.+++
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrl 170 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRL 170 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeE
Confidence 467899999999999999999999986 46799999999998776666654 4789999999999999999999999999
Q ss_pred EEeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecch-
Q 010876 244 LVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE- 321 (498)
Q Consensus 244 vI~DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 321 (498)
+|+||||.+.+ ..|...+..|+..++..+|++.+|||.|..+...+.+++.+|..+.....+ .....++|++.....
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d-~~L~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADD-VQLFGIKQYVVAKCSP 249 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCC-ceeechhheeeeccCC
Confidence 99999999998 569999999999999999999999999999999999999999999887766 455667777765543
Q ss_pred -------hhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 010876 322 -------SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 394 (498)
Q Consensus 322 -------~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLva 394 (498)
..|.+.|..+++.+ +-.+.||||+....|+-++.+|...|+++.++.|.|++.+|..+++.+++-.++|||+
T Consensus 250 nnsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 24667777777765 3357999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 395 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 395 T~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
|+..+||||-+++++|||.|.|.+.++|.||||||||.|..|.+++|+....+
T Consensus 329 TDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999999987644
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.1e-49 Score=418.50 Aligned_cols=342 Identities=23% Similarity=0.329 Sum_probs=264.3
Q ss_pred Cccc--CCCCHHHHHHHHH-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010876 94 SFRD--VGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 170 (498)
Q Consensus 94 ~f~~--~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 170 (498)
.|.. ++....+...++. .|+..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. ...+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 3543 3444555555543 68999999999999999999999999999999999999999853 34699
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHh------cCCcEEEcChHHHHH--HHhccC---cccc
Q 010876 171 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ------KGVEIVIATPGRLID--MLESHN---TNLR 239 (498)
Q Consensus 171 vl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Ivi~T~~~l~~--~l~~~~---~~l~ 239 (498)
||+|+++|+.++...+... ++....+.++.....+...+. ...+|+++||++|.. .+.+.. ....
T Consensus 505 VISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 9999999998665555543 578888888887665544332 357999999999852 222111 1134
Q ss_pred cccEEEeccchhhhcCC--cHHHHHHH--HHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeee
Q 010876 240 RVTYLVLDEADRMLDMG--FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQH 315 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (498)
.+.+|||||||++.+|+ |++.+..+ +....+..++++||||++..+...+...+.....+.+.... ...++.
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf--~RpNL~-- 656 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF--NRPNLW-- 656 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc--CccceE--
Confidence 57899999999999987 77777653 44444678999999999998887655554332222221111 112222
Q ss_pred Eeecchhh-hHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 010876 316 VDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 394 (498)
Q Consensus 316 ~~~~~~~~-k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLva 394 (498)
+.++.... ....+..++.....+.+.||||.+++.|+.++..|+..|+.+..+||+|++++|..++++|.+|+++||||
T Consensus 657 y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVA 736 (1195)
T PLN03137 657 YSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICA 736 (1195)
T ss_pred EEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 22222222 24556666665444568999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHH
Q 010876 395 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 454 (498)
Q Consensus 395 T~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 454 (498)
|+++++|||+|+|++||||++|.|++.|+||+|||||.|..|.|++|+...|......++
T Consensus 737 TdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 737 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred echhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987766555554
No 37
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-51 Score=383.23 Aligned_cols=352 Identities=29% Similarity=0.454 Sum_probs=293.2
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHhhc---------CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010876 103 YVMQEISKAGFFEPTPIQAQGWPMALK---------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 173 (498)
Q Consensus 103 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~---------~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~ 173 (498)
.+.+.+.++++...+|+|..++|+++. .+|+.+.||||||||++|.+|+++.+...+ -+.-++|||+
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~----v~~LRavViv 222 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP----VKRLRAVVIV 222 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC----ccceEEEEEe
Confidence 344558899999999999999999862 578999999999999999999999887743 2347799999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcC-----CcEEEcChHHHHHHHhc-cCcccccccEEEec
Q 010876 174 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG-----VEIVIATPGRLIDMLES-HNTNLRRVTYLVLD 247 (498)
Q Consensus 174 P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~Ivi~T~~~l~~~l~~-~~~~l~~~~~vI~D 247 (498)
|+++|+.|+++.|.++....++.|+.+.|..+.......+... .+|+|+||++|.+++.+ ..++|+++.++|+|
T Consensus 223 Ptr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVID 302 (620)
T KOG0350|consen 223 PTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVID 302 (620)
T ss_pred eHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEec
Confidence 9999999999999999999999998888888887777776543 38999999999999985 67889999999999
Q ss_pred cchhhhcCCcHHHHHHHHHhcC----------------------------------CCCcEEEEcCCCcHHHHHHHHHHh
Q 010876 248 EADRMLDMGFEPQIKKILSQIR----------------------------------PDRQTLYWSATWPKEVEHLARQYL 293 (498)
Q Consensus 248 E~h~~~~~~~~~~~~~i~~~~~----------------------------------~~~~~i~~SAT~~~~~~~~~~~~~ 293 (498)
|||+|++..|..++..++..+. +..+.+.+|||+...-..+...-+
T Consensus 303 EADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l 382 (620)
T KOG0350|consen 303 EADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTL 382 (620)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhc
Confidence 9999998877766665544331 223467889998777667766667
Q ss_pred cCCeEEEEcC---CCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHh----hCCCCeE
Q 010876 294 YNPYKVIIGS---PDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR----MDGWPAL 366 (498)
Q Consensus 294 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~----~~~~~~~ 366 (498)
..|..+.+.. .....+..+.+....+....|-..+..++... +..++|+|+++...+..++..|+ +..+++.
T Consensus 383 ~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s 461 (620)
T KOG0350|consen 383 HIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVS 461 (620)
T ss_pred CCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccchhh
Confidence 7775444432 22344455566665666667777777777764 44689999999999999999887 3456777
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEecccc
Q 010876 367 SIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 446 (498)
Q Consensus 367 ~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 446 (498)
.+.|.++...|...+..|..|.+.||||+|+++||+|+.+++.|||||+|.+..+|+||+||++|+|+.|.|+++++..+
T Consensus 462 ~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 462 EFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred hhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 010876 447 ARFAKELITILEE 459 (498)
Q Consensus 447 ~~~~~~l~~~l~~ 459 (498)
...+.++++....
T Consensus 542 ~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 542 KRLFSKLLKKTNL 554 (620)
T ss_pred chHHHHHHHHhcc
Confidence 8887777776554
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1e-49 Score=406.11 Aligned_cols=326 Identities=26% Similarity=0.370 Sum_probs=255.3
Q ss_pred HCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 110 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 110 ~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
..||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. +..+|||+|+++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 368999999999999999999999999999999999999998753 346899999999999999988865
Q ss_pred cCCCCceEEEEeCCCCCchhH---HHH-hcCCcEEEcChHHHHHHH-hccCc-ccccccEEEeccchhhhcCC--cHHHH
Q 010876 190 GASSKIKSTCIYGGVPKGPQV---RDL-QKGVEIVIATPGRLIDML-ESHNT-NLRRVTYLVLDEADRMLDMG--FEPQI 261 (498)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~Ivi~T~~~l~~~l-~~~~~-~l~~~~~vI~DE~h~~~~~~--~~~~~ 261 (498)
+ +.+..+.++....+.. ..+ ....+|+++||+++.... ....+ ...++++||+||||++.+++ |.+.+
T Consensus 75 g----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 G----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred C----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 4 5666666665543222 222 334799999999975321 00111 46788999999999999876 66666
Q ss_pred HHH--HHhcCCCCcEEEEcCCCcHHHHHHHHHHhc--CCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcC
Q 010876 262 KKI--LSQIRPDRQTLYWSATWPKEVEHLARQYLY--NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMD 337 (498)
Q Consensus 262 ~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 337 (498)
..+ +....++.+++++|||+++.+.......+. ++..+.. ... ..++...+.. ........+..++.....
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s~~---r~nl~~~v~~-~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT-SFD---RPNLYYEVRR-KTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-CCC---CCCcEEEEEe-CCccHHHHHHHHHHHhcC
Confidence 554 233336789999999999887665554432 3333222 211 1122222211 112345566666665555
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG 417 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~ 417 (498)
+.++||||+++++|+.++..|+..++.+..+|++|++++|..+++.|++|+++|||||+++++|||+|++++||++++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHH
Q 010876 418 SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 455 (498)
Q Consensus 418 s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 455 (498)
|.+.|+||+||+||.|..|.|++|+++.|...++.++.
T Consensus 306 s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 306 SMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999999999999999988776666654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.1e-47 Score=401.01 Aligned_cols=332 Identities=23% Similarity=0.372 Sum_probs=255.7
Q ss_pred CHHHHHHHHH-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 010876 101 PDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 179 (498)
Q Consensus 101 ~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La 179 (498)
++...+.|++ .||..|+|+|.++++.++.++++++++|||+|||++|++|++.. ...+|||+|+++|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~ 78 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLM 78 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHH
Confidence 3334444443 69999999999999999999999999999999999999998854 33589999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCCCchhHH---HHh-cCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcC
Q 010876 180 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 255 (498)
Q Consensus 180 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~ 255 (498)
.|+.+.+..++ +...++.++........ .+. ...+++++||+++........+...++++||+||||++.++
T Consensus 79 ~dqv~~l~~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 79 KDQVDQLLANG----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHHcC----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 99999888763 56666666654433322 222 34789999999986422112233457899999999999987
Q ss_pred C--cHHHHHHH--HHhcCCCCcEEEEcCCCcHHHHHHHHHHh--cCCeEEEEcCCCcccccceeeeEeecchhhhHHHHH
Q 010876 256 G--FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYL--YNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 329 (498)
Q Consensus 256 ~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 329 (498)
+ |.+.+..+ +....++.+++++|||+++.+.......+ .++... ..... ..++. +.+.....+...+.
T Consensus 155 G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~---r~nl~--~~v~~~~~~~~~l~ 228 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD---RPNIR--YTLVEKFKPLDQLM 228 (607)
T ss_pred cCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCC---CCcce--eeeeeccchHHHHH
Confidence 6 66655444 22233678999999999987765443333 233322 22211 11221 22223334455566
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCE
Q 010876 330 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 409 (498)
Q Consensus 330 ~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~ 409 (498)
..+... .+.++||||+++++|+.++..|+..++.+..+|++|++++|..+++.|++|+++|||||+++++|||+|++++
T Consensus 229 ~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~ 307 (607)
T PRK11057 229 RYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRF 307 (607)
T ss_pred HHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCE
Confidence 666543 4568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHH
Q 010876 410 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 454 (498)
Q Consensus 410 VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 454 (498)
||+|++|.|.+.|+||+||+||.|..|.|++|+++.|...+..++
T Consensus 308 VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 308 VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876655544
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9.8e-48 Score=411.45 Aligned_cols=336 Identities=22% Similarity=0.299 Sum_probs=261.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010876 94 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 172 (498)
Q Consensus 94 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl 172 (498)
.|+++++|+.+++.+.+.|+.+|+|+|.++++. +++++|+++++|||||||++|.+|++.++.. +.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 578899999999999999999999999999998 7789999999999999999999999988853 5679999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhh
Q 010876 173 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 252 (498)
Q Consensus 173 ~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~ 252 (498)
+|+++||.|+++.+.++.. .++++..++|+...... .....+|+|+||+++..++.+....+.++++||+||+|.+
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999998753 47888888887654332 2245799999999998888776666889999999999999
Q ss_pred hcCCcHHHHHHHHHhc---CCCCcEEEEcCCCcHHHHHHHHHHhcCC-------eEEE--EcCCCcccccceeeeEeecc
Q 010876 253 LDMGFEPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYNP-------YKVI--IGSPDLKANHAIRQHVDIVS 320 (498)
Q Consensus 253 ~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~ 320 (498)
.+.+++..++.++..+ .+..|++++|||+++ ..++...+.... ..+. +.......... .+ ....
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~--~~~~ 225 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQ--REVE 225 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-cc--ccCC
Confidence 9988898888887665 478899999999976 344443322111 1100 00000000000 00 0011
Q ss_pred hhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCC------------------------------------CC
Q 010876 321 ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG------------------------------------WP 364 (498)
Q Consensus 321 ~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~------------------------------------~~ 364 (498)
...+...+..++..+..++++||||+++++|+.++..|.... ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 226 VPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred CccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 111111222222223356799999999999999988885421 35
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEE----cC-----CCCChhHHHHhhcccccCCCc
Q 010876 365 ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD-----FPGSLEDYVHRIGRTGRAGAK 435 (498)
Q Consensus 365 ~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~-----~p~s~~~~~Qr~GR~~R~g~~ 435 (498)
+..+|+++++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|.||+|||||.|.+
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 788999999999999999999999999999999999999999999997 65 588999999999999999876
Q ss_pred --ceEEEEeccc
Q 010876 436 --GTAYTFFTAA 445 (498)
Q Consensus 436 --g~~~~~~~~~ 445 (498)
|.++++....
T Consensus 386 ~~G~~ii~~~~~ 397 (737)
T PRK02362 386 PYGEAVLLAKSY 397 (737)
T ss_pred CCceEEEEecCc
Confidence 8999888654
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.9e-46 Score=404.95 Aligned_cols=343 Identities=22% Similarity=0.268 Sum_probs=253.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCC-CCCCCEEEEEcCcHHH
Q 010876 100 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA-PGDGPIVLVLAPTREL 178 (498)
Q Consensus 100 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vlvl~P~~~L 178 (498)
+++.+.+.+.+ +|..|+|+|.++|+.+++|+|++++||||||||++|++|++.++....... ...+.++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666554 788999999999999999999999999999999999999999887532211 1346789999999999
Q ss_pred HHHHHHHHHH-------h----cCCC-CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCc--ccccccEE
Q 010876 179 AVQIQQESTK-------F----GASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--NLRRVTYL 244 (498)
Q Consensus 179 a~q~~~~~~~-------~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~--~l~~~~~v 244 (498)
++|+++.+.. + +... ++++.+.+|+.........+.+.++|+|+||++|..++.+... .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999875542 2 2333 6788899999887777677777899999999999877765432 47899999
Q ss_pred EeccchhhhcCCcHHHHHHHHH----hcCCCCcEEEEcCCCcHHHHHHHHHHhcC-----CeEEEEcCCCcccccceeee
Q 010876 245 VLDEADRMLDMGFEPQIKKILS----QIRPDRQTLYWSATWPKEVEHLARQYLYN-----PYKVIIGSPDLKANHAIRQH 315 (498)
Q Consensus 245 I~DE~h~~~~~~~~~~~~~i~~----~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 315 (498)
|+||+|.+.+..++..+...+. ...+..|++++|||+++ ...++..+... +..+.+..........+...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 9999999998776665554443 33467899999999976 33443333221 11111111110111111100
Q ss_pred E-----eecchhhhHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhC------CCCeEEecCCCCHHHHHHHHHH
Q 010876 316 V-----DIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD------GWPALSIHGDKSQAERDWVLSE 383 (498)
Q Consensus 316 ~-----~~~~~~~k~~~l~~~l~~-~~~~~~vlIf~~s~~~~~~l~~~L~~~------~~~~~~lh~~~~~~~r~~~~~~ 383 (498)
. ...........+...+.. +....++||||+|+..|+.++..|+.. +..+..+||++++++|..+++.
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~ 335 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEK 335 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHH
Confidence 0 001111222333333333 234568999999999999999999862 4679999999999999999999
Q ss_pred HhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC-CCcceEEEEecc
Q 010876 384 FKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA-GAKGTAYTFFTA 444 (498)
Q Consensus 384 f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~-g~~g~~~~~~~~ 444 (498)
|++|+++|||||+++++|||+|++++||+++.|.+..+|+||+||+||. |..+.++++...
T Consensus 336 fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 336 LKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999999999999999999999999999999986 344455555443
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.2e-46 Score=394.73 Aligned_cols=321 Identities=24% Similarity=0.385 Sum_probs=256.8
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 111 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 111 ~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.||.+++|+|.++|+.++.|+|+++++|||+|||++|++|++.. ...++||+|+++|+.|+.+.+..++
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~g 77 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAAG 77 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999998843 3358999999999999999888763
Q ss_pred CCCCceEEEEeCCCCCchhHHH----HhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC--cHHHHHHH
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRD----LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKI 264 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~--~~~~~~~i 264 (498)
+.+..+.++......... .....+|+++||+++............++++|||||||++.+++ |.+.+..+
T Consensus 78 ----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 78 ----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 667777777654433221 23468999999999865333333445688999999999999876 77766655
Q ss_pred H---HhcCCCCcEEEEcCCCcHHHHHHHHHHhc--CCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCC
Q 010876 265 L---SQIRPDRQTLYWSATWPKEVEHLARQYLY--NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGS 339 (498)
Q Consensus 265 ~---~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 339 (498)
. ..+ +..+++++|||++..+...+...+. ++..+ .... ...++ .+.+.....+...+.+.+.... +.
T Consensus 154 ~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~~---~r~nl--~~~v~~~~~~~~~l~~~l~~~~-~~ 225 (591)
T TIGR01389 154 GSLAERF-PQVPRIALTATADAETRQDIRELLRLADANEF-ITSF---DRPNL--RFSVVKKNNKQKFLLDYLKKHR-GQ 225 (591)
T ss_pred HHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecCC---CCCCc--EEEEEeCCCHHHHHHHHHHhcC-CC
Confidence 3 333 3556999999999888766665553 23222 2111 11122 2223344556677777776643 56
Q ss_pred eEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCCh
Q 010876 340 RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSL 419 (498)
Q Consensus 340 ~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~ 419 (498)
++||||++++.|+.+++.|...++++..+|++|+.++|..+++.|.+|+++|||||+++++|||+|++++||++++|.|.
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~ 305 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNL 305 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcccccCCCcceEEEEeccccHHHHHHHH
Q 010876 420 EDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 454 (498)
Q Consensus 420 ~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 454 (498)
+.|+|++||+||.|..+.|++|+++.|......++
T Consensus 306 ~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 306 ESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred HHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999988765544443
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.9e-46 Score=398.16 Aligned_cols=339 Identities=20% Similarity=0.279 Sum_probs=261.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010876 94 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 172 (498)
Q Consensus 94 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl 172 (498)
+|+++++++.+.+.+++.|+.+|+|+|.++++. +++++++++++|||||||++|.+|++.++... +.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 577889999999999999999999999999986 78999999999999999999999999887652 5689999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhh
Q 010876 173 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 252 (498)
Q Consensus 173 ~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~ 252 (498)
+|+++|+.|+++.+.++. ..++++..++|+...... ....++|+|+||+++..++.+....++++++||+||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999998874 457889889988765332 2346799999999998888776667889999999999999
Q ss_pred hcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccc-eeeeEeecchh--hh-HHHH
Q 010876 253 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHA-IRQHVDIVSES--QK-YNKL 328 (498)
Q Consensus 253 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~k-~~~l 328 (498)
.+.+++..++.++..+....|++++|||+++ ..+++. ++....... .......... ..+........ .+ ...+
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVS-DWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccC-CCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 9988999999999999889999999999986 455554 333221110 0000000000 00111111110 01 0111
Q ss_pred HHHH-HhhcCCCeEEEEeCCcccHHHHHHHHhhC---------------------------------CCCeEEecCCCCH
Q 010876 329 VKLL-EDIMDGSRILIFMDTKKGCDQITRQLRMD---------------------------------GWPALSIHGDKSQ 374 (498)
Q Consensus 329 ~~~l-~~~~~~~~vlIf~~s~~~~~~l~~~L~~~---------------------------------~~~~~~lh~~~~~ 374 (498)
...+ ..+..+.++||||++++.|+.++..|... ...+..+|++|++
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 1222 22234678999999999998887666321 2358899999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEE-------cCCCC-ChhHHHHhhcccccCC--CcceEEEEecc
Q 010876 375 AERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN-------YDFPG-SLEDYVHRIGRTGRAG--AKGTAYTFFTA 444 (498)
Q Consensus 375 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~-------~~~p~-s~~~~~Qr~GR~~R~g--~~g~~~~~~~~ 444 (498)
++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+|||||.| ..|.++++...
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999999999994 44433 5779999999999975 56999999876
Q ss_pred cc
Q 010876 445 AN 446 (498)
Q Consensus 445 ~~ 446 (498)
.+
T Consensus 388 ~~ 389 (720)
T PRK00254 388 EE 389 (720)
T ss_pred cc
Confidence 54
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.4e-44 Score=382.23 Aligned_cols=336 Identities=21% Similarity=0.228 Sum_probs=258.5
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010876 100 FPDYVMQEISK-AGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 172 (498)
Q Consensus 100 l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl 172 (498)
.+..+.+.+.. .+| +||++|.+||+.++++ .|.+++++||+|||.+|++|++..+.. +++++|+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvL 506 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVL 506 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEE
Confidence 44556666655 466 7999999999999874 689999999999999999999887764 5789999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh---HHHHhc-CCcEEEcChHHHHHHHhccCcccccccEEEecc
Q 010876 173 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 248 (498)
Q Consensus 173 ~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE 248 (498)
+||++||.|+++.+.++....++++..++++....++ ...+.. .++|||+||..+ .....+.++++||+||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDE 581 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeec
Confidence 9999999999999999888888888888887664433 233333 489999999433 2345688999999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHH
Q 010876 249 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 328 (498)
Q Consensus 249 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 328 (498)
+|++ +......+..+....++++||||+.+....+......++..+...... ...+...+...... ...
T Consensus 582 ahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~~~---~i~ 650 (926)
T TIGR00580 582 EQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEYDPE---LVR 650 (926)
T ss_pred cccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEecCHH---HHH
Confidence 9994 334455667777889999999998776666555555555544332211 12233333221111 111
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 010876 329 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 406 (498)
Q Consensus 329 ~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 406 (498)
..++.++..+++++|||+++++++.+++.|++. ++++..+||.|++.+|+.++++|++|+++|||||+++++|+|+|+
T Consensus 651 ~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~ 730 (926)
T TIGR00580 651 EAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPN 730 (926)
T ss_pred HHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccccc
Confidence 123334456779999999999999999999874 788999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC-ChhHHHHhhcccccCCCcceEEEEecccc--HHHHHHHHHHHHHh
Q 010876 407 VKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAAN--ARFAKELITILEEA 460 (498)
Q Consensus 407 v~~VI~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~ 460 (498)
+++||+++.|. +..+|.||+||+||.|+.|.|++++...+ .+...+-++.+++.
T Consensus 731 v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 731 ANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 99999999875 67899999999999999999999987653 23444445555443
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.6e-45 Score=387.78 Aligned_cols=335 Identities=21% Similarity=0.268 Sum_probs=253.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010876 94 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 173 (498)
Q Consensus 94 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~ 173 (498)
.|+++++++.+++.+.+.++. |+++|.++++.+.+++++++++|||||||++|.++++..+.. +.++||++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 477889999999999988875 999999999999999999999999999999999999887764 45799999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhh
Q 010876 174 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 253 (498)
Q Consensus 174 P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~ 253 (498)
|+++||.|+++.+.++. ..++++...+|+...... ....++|+|+||+++..++.+....+.++++||+||+|.+.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999999864 457788888887654322 23467999999999988887766668899999999999999
Q ss_pred cCCcHHHHHHHHHh---cCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCccccccee--eeEeecchhhhHHHH
Q 010876 254 DMGFEPQIKKILSQ---IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIR--QHVDIVSESQKYNKL 328 (498)
Q Consensus 254 ~~~~~~~~~~i~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~l 328 (498)
+..++..++.++.. ++++.|++++|||+++ ..++.+.+....+....... .....+. ..............+
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~~r~v--pl~~~i~~~~~~~~~~~~~~~~~~ 225 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSNFRPV--PLKLGILYRKRLILDGYERSQVDI 225 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCCCCCC--CeEEEEEecCeeeecccccccccH
Confidence 88888888877654 4578899999999976 45555433222111000000 0000000 000000011111123
Q ss_pred HHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhCC-------------------------CCeEEecCCCCHHHHHHHHH
Q 010876 329 VKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDG-------------------------WPALSIHGDKSQAERDWVLS 382 (498)
Q Consensus 329 ~~~l~~-~~~~~~vlIf~~s~~~~~~l~~~L~~~~-------------------------~~~~~lh~~~~~~~r~~~~~ 382 (498)
..++.+ ...++++||||++++.|+.++..|.... ..+..+|+++++++|..+++
T Consensus 226 ~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~ 305 (674)
T PRK01172 226 NSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred HHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHH
Confidence 334443 3456799999999999999998886431 24678999999999999999
Q ss_pred HHhcCCCcEEEEeccccccCCCCCCCEEEEcC---------CCCChhHHHHhhcccccCCC--cceEEEEeccc
Q 010876 383 EFKAGKSPIMTATDVAARGLDVKDVKYVINYD---------FPGSLEDYVHRIGRTGRAGA--KGTAYTFFTAA 445 (498)
Q Consensus 383 ~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~---------~p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~ 445 (498)
.|++|.++|||||+++++|+|+|+..+|| .+ .|.+..+|.||+|||||.|. .|.+++++...
T Consensus 306 ~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 306 MFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999865554 33 24588999999999999985 47788776543
No 46
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-46 Score=325.14 Aligned_cols=334 Identities=29% Similarity=0.522 Sum_probs=294.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010876 93 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 172 (498)
Q Consensus 93 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl 172 (498)
.-|.++-|.+++++++-..||..|...|.++||.+.-|-|++++|..|.|||.+|+++.++++.-- .....+|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlvm 116 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLVM 116 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEEE
Confidence 457788899999999999999999999999999999999999999999999999999999886542 224569999
Q ss_pred cCcHHHHHHHHHHHHHhcCCC-CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh
Q 010876 173 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 251 (498)
Q Consensus 173 ~P~~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~ 251 (498)
|.||+||-|+..+..+|.+.. ++++.+++||.........+.+-++|+|+||++++.+..+..+++++++++|+|||+.
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 999999999999888876654 4889999999999888888888899999999999999999999999999999999998
Q ss_pred hhcC-CcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHH
Q 010876 252 MLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 330 (498)
Q Consensus 252 ~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 330 (498)
|+.+ ..+..+..|.+..+...|+.++|||+++++...+++++.+|..+.+..+.......+.|++....+.+|...+.+
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 8764 467788899999999999999999999999999999999999999988877778888999988899999999999
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEE
Q 010876 331 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 410 (498)
Q Consensus 331 ~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 410 (498)
+|..+.- .+++||+.+... | + | +.+ +|||+++++|+||..++.|
T Consensus 277 LLd~LeF-NQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 277 LLDVLEF-NQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhhhhhh-cceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcccceee
Confidence 9887644 589999988765 0 0 2 222 8999999999999999999
Q ss_pred EEcCCCCChhHHHHhhcccccCCCcceEEEEeccc-cHHHHHHHHHHHHHhCCCCCHH
Q 010876 411 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPE 467 (498)
Q Consensus 411 I~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~ 467 (498)
||||+|.+..+|+||++||||.|..|.+++|++.. +.+.+..+.+-.+-...++|++
T Consensus 321 ~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 321 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99999999999999999999999999999998854 6677777777666666677766
No 47
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.1e-44 Score=373.90 Aligned_cols=313 Identities=21% Similarity=0.241 Sum_probs=242.7
Q ss_pred CCCCCCcHHHHHHHHHhhcCC-cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCC-EEEEEcCcHHHHHHHHHHHHH
Q 010876 111 AGFFEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP-IVLVLAPTRELAVQIQQESTK 188 (498)
Q Consensus 111 ~~~~~~~~~Q~~~i~~~l~~~-~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~-~vlvl~P~~~La~q~~~~~~~ 188 (498)
.||. |+|||.++++.++.|+ ++++++|||||||.+|.++++.. .. ....+ ++++++|+|+|+.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 5775 9999999999999998 57788999999998765444422 11 11234 455578999999999999998
Q ss_pred hcCCC-----------------------CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCc---------
Q 010876 189 FGASS-----------------------KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--------- 236 (498)
Q Consensus 189 ~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~--------- 236 (498)
++... .+++.+++||.....++..+..+++|||+|++. +.+..+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~----i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDM----IGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHH----HcCCccccccccccc
Confidence 87644 488999999999999999999999999999644 444333
Q ss_pred -------ccccccEEEeccchhhhcCCcHHHHHHHHHhc--CCC---CcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCC
Q 010876 237 -------NLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RPD---RQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP 304 (498)
Q Consensus 237 -------~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~--~~~---~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 304 (498)
.+.++++||||||| ++++|...+..|++.+ ++. +|+++||||++.++..+...++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26789999999999 6789999999999964 332 699999999999888888888777765555443
Q ss_pred CcccccceeeeEeecchhhhHHHHHHHHHh--hcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHH----
Q 010876 305 DLKANHAIRQHVDIVSESQKYNKLVKLLED--IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERD---- 378 (498)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~---- 378 (498)
.. ....+.+++ .+....|...+...+.. ....+++||||||++.|+.+++.|++.++ ..+||+|++.+|.
T Consensus 239 ~l-~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 239 RL-AAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred cc-cccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 32 223344433 23334444443333222 12446899999999999999999998876 8999999999999
Q ss_pred -HHHHHHhc----CC-------CcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcc-eEEEEec
Q 010876 379 -WVLSEFKA----GK-------SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG-TAYTFFT 443 (498)
Q Consensus 379 -~~~~~f~~----g~-------~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g-~~~~~~~ 443 (498)
.+++.|++ ++ ..|||||+++++||||+. ++||++..| .+.|+||+||++|.|+.+ ..++++.
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 78999987 44 689999999999999986 889987777 799999999999999864 3355553
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.8e-44 Score=372.29 Aligned_cols=338 Identities=25% Similarity=0.301 Sum_probs=271.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 010876 100 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 179 (498)
Q Consensus 100 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La 179 (498)
|++.+.+.+... |.+|||.|.+||+.+.+|+|++++||||||||+++.+|++..+..........+-.+|||+|.++|+
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 788898988877 9999999999999999999999999999999999999999999886422233467899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc--CcccccccEEEeccchhhhcCCc
Q 010876 180 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDMGF 257 (498)
Q Consensus 180 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~--~~~l~~~~~vI~DE~h~~~~~~~ 257 (498)
+.+...+...+...++.+.+-+|+++.....+...+.++|+|+|||.|.-++... ...|.++.+||+||+|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 9999999999999999999999999988888888999999999999998777653 33588999999999999998776
Q ss_pred HHHHHHHHHhc---CCCCcEEEEcCCCcHHHHHHHHHHhcCC--eEEEEcCCCcccccceeeeEeecc-------hhhhH
Q 010876 258 EPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYNP--YKVIIGSPDLKANHAIRQHVDIVS-------ESQKY 325 (498)
Q Consensus 258 ~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~k~ 325 (498)
+.++.-.+..+ -++.|.|++|||..+ ..+.++.+.... ..+..... .....+.-...... ....+
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~--~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA--AKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc--CCcceEEEEecCCccccccchhHHHH
Confidence 65554443332 238999999999874 555555555543 33322221 11111111111111 11223
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCC-CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 010876 326 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 404 (498)
Q Consensus 326 ~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~-~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 404 (498)
..+.+++++ ...+|||+||+..++.++..|++.+ .++..+||+++.++|..++++|++|+.+++|||+.++-|||+
T Consensus 244 ~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 244 ERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 334444433 4479999999999999999999876 789999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHhhccccc-CCCcceEEEEecc
Q 010876 405 KDVKYVINYDFPGSLEDYVHRIGRTGR-AGAKGTAYTFFTA 444 (498)
Q Consensus 405 ~~v~~VI~~~~p~s~~~~~Qr~GR~~R-~g~~g~~~~~~~~ 444 (498)
.+++.||++..|.+.+.++||+||+|+ .+....++++...
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999996 4555666666554
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=7.6e-43 Score=368.42 Aligned_cols=337 Identities=20% Similarity=0.257 Sum_probs=249.9
Q ss_pred HHHHHHHHH-CCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 102 DYVMQEISK-AGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 102 ~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
..+.+.+.. .+| +||++|.++++.+..+ .+.+++++||||||++|++|++..+.. +.+++|++|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaP 318 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAP 318 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEec
Confidence 344444544 454 8999999999999876 379999999999999999999887754 778999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh---HHHHhc-CCcEEEcChHHHHHHHhccCcccccccEEEeccch
Q 010876 175 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 250 (498)
Q Consensus 175 ~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h 250 (498)
|++||.|+++.+.++....++++..++|+...... ...+.. .++|+|+||+.+.+ ...+.++++||+||+|
T Consensus 319 T~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQH 393 (681)
T ss_pred cHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechh
Confidence 99999999999999998888999999999875333 333444 48999999987743 3457889999999999
Q ss_pred hhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHH
Q 010876 251 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 330 (498)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 330 (498)
++.. .....+......+++++||||+.+....+......+... +.... .....+...+. .. .+...+.+
T Consensus 394 rfg~-----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~--i~~~p-~~r~~i~~~~~--~~-~~~~~~~~ 462 (681)
T PRK10917 394 RFGV-----EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSV--IDELP-PGRKPITTVVI--PD-SRRDEVYE 462 (681)
T ss_pred hhhH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEE--EecCC-CCCCCcEEEEe--Cc-ccHHHHHH
Confidence 9642 223333344456899999999866554443322112222 21111 11122333222 22 22233333
Q ss_pred HHH-hhcCCCeEEEEeCCcc--------cHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 010876 331 LLE-DIMDGSRILIFMDTKK--------GCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 399 (498)
Q Consensus 331 ~l~-~~~~~~~vlIf~~s~~--------~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 399 (498)
.+. ....+.+++|||+.++ .++.+++.|... ++++..+||+|++.+|+.++++|++|+++|||||++++
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 542 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 542 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee
Confidence 333 3445679999999654 456677777654 47899999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcCCCC-ChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCC
Q 010876 400 RGLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQK 463 (498)
Q Consensus 400 ~Gldi~~v~~VI~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 463 (498)
+|+|+|++++||+++.|. ..+++.||+||+||.|..|.|++++.....+.....++.+++...-
T Consensus 543 ~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dg 607 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDG 607 (681)
T ss_pred eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcch
Confidence 999999999999999986 5788999999999999999999999644344455556667664433
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.3e-42 Score=378.73 Aligned_cols=351 Identities=18% Similarity=0.177 Sum_probs=264.6
Q ss_pred HHHHHH-HHHCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 102 DYVMQE-ISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 102 ~~~~~~-l~~~~~~~~~~~Q~~~i~~~l~~------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
..+.+. ....+| +||+.|.+||+.++.+ .|++++++||+|||.+|+.+++..+.. +++++|++|
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--------g~qvlvLvP 657 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--------HKQVAVLVP 657 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--------CCeEEEEeC
Confidence 344444 455666 8999999999999986 789999999999999998887766543 678999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHH---h-cCCcEEEcChHHHHHHHhccCcccccccEEEeccch
Q 010876 175 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL---Q-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 250 (498)
Q Consensus 175 ~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h 250 (498)
|++||.|+++.+.++....++++.++.++.+..++...+ . ..++|+|+||+.+ . ....+.++++||+||+|
T Consensus 658 T~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEah 732 (1147)
T PRK10689 658 TTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEEH 732 (1147)
T ss_pred cHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEechh
Confidence 999999999999987766778888888887765554433 2 3589999999744 2 34457899999999999
Q ss_pred hhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHH
Q 010876 251 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 330 (498)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 330 (498)
++. + .....++.++.+.|+++||||+.+....++...+.++..+...... ...+...+...... .....
T Consensus 733 rfG---~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~~---~~k~~ 801 (1147)
T PRK10689 733 RFG---V--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDSL---VVREA 801 (1147)
T ss_pred hcc---h--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecCcH---HHHHH
Confidence 962 2 2245567778899999999999888888777777777766543321 12233333222211 11223
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCC
Q 010876 331 LLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK 408 (498)
Q Consensus 331 ~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~ 408 (498)
++.++..+++++||||+++.++.+++.|++. +.++..+||+|++.+|+.++.+|++|+++|||||+++++|+|+|+++
T Consensus 802 il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~ 881 (1147)
T PRK10689 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 (1147)
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCC
Confidence 3444445679999999999999999999876 77899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC-CChhHHHHhhcccccCCCcceEEEEecccc--HHHHHHHHHHHHHhCC---CCCHHHHhhhcCCCC
Q 010876 409 YVINYDFP-GSLEDYVHRIGRTGRAGAKGTAYTFFTAAN--ARFAKELITILEEAGQ---KVSPELAAMGRGAPP 477 (498)
Q Consensus 409 ~VI~~~~p-~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~~~---~~~~~l~~~~~~~~~ 477 (498)
+||..+.+ .+..+|.||+||+||.|+.|.|++++.... .+.+..-++.+++... -+.--+.+|.-++.|
T Consensus 882 ~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~g 956 (1147)
T PRK10689 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 (1147)
T ss_pred EEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCc
Confidence 99955443 356789999999999999999998876532 2334444455554422 344445555555544
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.1e-42 Score=362.85 Aligned_cols=359 Identities=19% Similarity=0.257 Sum_probs=257.2
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 010876 104 VMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 177 (498)
Q Consensus 104 ~~~~l~~~~~~~~~~~Q~~~i~~~l~~------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~ 177 (498)
+.+.+...+| +||++|.+|++.++.+ .+.+++++||||||++|++|++..+.. +.+++|++||++
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT~~ 295 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPTEI 295 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCHHH
Confidence 3445556677 8999999999999865 258999999999999999999887754 678999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCCCCchh---HHHHh-cCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhh
Q 010876 178 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 253 (498)
Q Consensus 178 La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~ 253 (498)
||.|+++.+.++....++++..++|+...... ...+. ..++|+|+||+.+.+ ...+.++++||+||+|++.
T Consensus 296 LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 296 LAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhcc
Confidence 99999999999988889999999998876543 33333 347999999988753 3457889999999999864
Q ss_pred cCCcHHHHHHHHHhcC--CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHH
Q 010876 254 DMGFEPQIKKILSQIR--PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 331 (498)
Q Consensus 254 ~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 331 (498)
... ...+..... ..+++++||||+.+....+.. ..+.....+.... .....+...+ .....+ ..+...
T Consensus 371 ~~q----r~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p-~~r~~i~~~~--~~~~~~-~~~~~~ 440 (630)
T TIGR00643 371 VEQ----RKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELP-PGRKPITTVL--IKHDEK-DIVYEF 440 (630)
T ss_pred HHH----HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCC-CCCCceEEEE--eCcchH-HHHHHH
Confidence 322 222333222 268999999998654433322 1111111111111 1112222222 222222 334444
Q ss_pred HH-hhcCCCeEEEEeCCcc--------cHHHHHHHHhh--CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 010876 332 LE-DIMDGSRILIFMDTKK--------GCDQITRQLRM--DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 400 (498)
Q Consensus 332 l~-~~~~~~~vlIf~~s~~--------~~~~l~~~L~~--~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 400 (498)
+. .+..+.+++|||+..+ .++.+++.|.. .++++..+||+|++++|..+++.|++|+.+|||||+++++
T Consensus 441 i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 520 (630)
T TIGR00643 441 IEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEV 520 (630)
T ss_pred HHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeec
Confidence 43 3445678999999764 45677777765 3678999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCC-ChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHhhhcCCCCCC
Q 010876 401 GLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPSS 479 (498)
Q Consensus 401 Gldi~~v~~VI~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~ 479 (498)
|||+|++++||+++.|. +.++|.||+||+||.|+.|.|++++.....+.....++.+.+...-+.-.-.++.-+++|
T Consensus 521 GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~Rg~g-- 598 (630)
T TIGR00643 521 GVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLELRGPG-- 598 (630)
T ss_pred CcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhcCCCc--
Confidence 99999999999999986 688999999999999999999999954444444555677766555444334455544433
Q ss_pred CCCCCCCCC
Q 010876 480 GHGGFRDRG 488 (498)
Q Consensus 480 ~~~~~~~~~ 488 (498)
.=-|.+|.|
T Consensus 599 ~~~g~~QsG 607 (630)
T TIGR00643 599 DLLGTKQSG 607 (630)
T ss_pred ccCCCcccC
Confidence 222355544
No 52
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.3e-42 Score=342.67 Aligned_cols=326 Identities=25% Similarity=0.376 Sum_probs=256.6
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 111 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 111 ~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.|+..+++-|.++|..+++++++++.+|||.||++||.+|++.. .| -+|||+|..+|...+.+.+...+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~~l~~~G 81 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVDQLEAAG 81 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999999999999998865 13 48999999999988888888765
Q ss_pred CCCCceEEEEeCCCCCchhH---HHHhc-CCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC--cHHHHHHH
Q 010876 191 ASSKIKSTCIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKI 264 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~--~~~~~~~i 264 (498)
+.+.++.+..+..+.. ..+.. ..++++-+||+|..--....+.-..+.+++|||||++.+|+ |++.+..+
T Consensus 82 ----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 82 ----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred ----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 6677777665544432 22333 37999999999754322222224567899999999999997 99888877
Q ss_pred HHhc--CCCCcEEEEcCCCcHHHHHHHHHHhcC-CeEEEEcCCCcccccceeeeEeec-chhhhHHHHHHHHHhhcCCCe
Q 010876 265 LSQI--RPDRQTLYWSATWPKEVEHLARQYLYN-PYKVIIGSPDLKANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSR 340 (498)
Q Consensus 265 ~~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~ 340 (498)
-... -++++++.+|||.++.+...+...+.. ...+...+.+ ..++...+... ....+...+.+ ......+.
T Consensus 158 g~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd---RpNi~~~v~~~~~~~~q~~fi~~--~~~~~~~~ 232 (590)
T COG0514 158 GRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD---RPNLALKVVEKGEPSDQLAFLAT--VLPQLSKS 232 (590)
T ss_pred HHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC---CchhhhhhhhcccHHHHHHHHHh--hccccCCC
Confidence 4333 248899999999998887766655543 3233333322 22222222211 12233332222 11334557
Q ss_pred EEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChh
Q 010876 341 ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE 420 (498)
Q Consensus 341 vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~ 420 (498)
.||||.|++.++.+++.|...|+.+..+|++|+.++|+.+.++|.+++.+|+|||.++++|||-||+++||||++|.|.+
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccCCCcceEEEEeccccHHHHHHHHHH
Q 010876 421 DYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 456 (498)
Q Consensus 421 ~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 456 (498)
.|.|-+|||||.|....|++|+.+.|......+++.
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred HHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999999999999999999998776666665
No 53
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.5e-41 Score=318.68 Aligned_cols=333 Identities=23% Similarity=0.264 Sum_probs=250.5
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 113 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 113 ~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
..+++.||......++.+ +++++.|||.|||+++++-+...+.+.+ + ++|+++||+-|+.|.++.|.++..-
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~------~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG------G-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC------C-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 348899999999888876 9999999999999999988887877742 3 8999999999999999999999877
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCC
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 272 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~ 272 (498)
..-.++.++|.......... .....|+|+||+.+.+-+..+..++.++.++||||||+.....-...+.+.......++
T Consensus 85 p~~~i~~ltGev~p~~R~~~-w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREEL-WAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHHH-HhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 77778888888876555444 44569999999999999999999999999999999999765543444444444555788
Q ss_pred cEEEEcCCCcHHHHH---HHHHHhcCCeEEEE------------------------------------------------
Q 010876 273 QTLYWSATWPKEVEH---LARQYLYNPYKVII------------------------------------------------ 301 (498)
Q Consensus 273 ~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~------------------------------------------------ 301 (498)
.+++||||+..+.+. .+..+....+.+..
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 899999996433222 22221111111100
Q ss_pred ---cCCCccc------c-------cc--------------------------------eeee------------------
Q 010876 302 ---GSPDLKA------N-------HA--------------------------------IRQH------------------ 315 (498)
Q Consensus 302 ---~~~~~~~------~-------~~--------------------------------~~~~------------------ 315 (498)
....... . .. ..++
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 0000000 0 00 0000
Q ss_pred -----------------EeecchhhhHHHHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHhhCCCCeE-Ee------
Q 010876 316 -----------------VDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPAL-SI------ 368 (498)
Q Consensus 316 -----------------~~~~~~~~k~~~l~~~l~~~~---~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~-~l------ 368 (498)
........|+..+.+++++.. .+.++|||++.+.+|+.+..+|...+..+. .+
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 000012345555666665543 345999999999999999999999887764 22
Q ss_pred --cCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccc-
Q 010876 369 --HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA- 445 (498)
Q Consensus 369 --h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~- 445 (498)
..+|+|.++.++++.|++|+++|||||+++++|+|||+++.||+|++..|+..++||.||+||. +.|.++++++++
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 2479999999999999999999999999999999999999999999999999999999999998 899999999988
Q ss_pred -cHHHHHHHHH
Q 010876 446 -NARFAKELIT 455 (498)
Q Consensus 446 -~~~~~~~l~~ 455 (498)
|+.+++.-++
T Consensus 483 rdeayy~~s~r 493 (542)
T COG1111 483 RDEAYYYSSRR 493 (542)
T ss_pred hHHHHHHHHHH
Confidence 4444444333
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.7e-41 Score=371.53 Aligned_cols=302 Identities=23% Similarity=0.300 Sum_probs=225.5
Q ss_pred EEcCCCchHHHHHHHHHHHHHhcCCCC-----CCCCCCEEEEEcCcHHHHHHHHHHHHHh-----------c-CCCCceE
Q 010876 135 GIAETGSGKTLAYLLPAIVHVNAQPFL-----APGDGPIVLVLAPTRELAVQIQQESTKF-----------G-ASSKIKS 197 (498)
Q Consensus 135 ~~a~TGsGKT~~~~l~~l~~~~~~~~~-----~~~~~~~vlvl~P~~~La~q~~~~~~~~-----------~-~~~~~~~ 197 (498)
+++|||||||++|.+|++..+..+... ....+.++|||+|+++|++|+.+.++.. + ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 1124678999999999999999988641 1 2346889
Q ss_pred EEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc-CcccccccEEEeccchhhhcCCcHH----HHHHHHHhcCCCC
Q 010876 198 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEADRMLDMGFEP----QIKKILSQIRPDR 272 (498)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~-~~~l~~~~~vI~DE~h~~~~~~~~~----~~~~i~~~~~~~~ 272 (498)
...+|+.+..++.+.+.+.++|+|+||++|..++.+. ...++++++|||||+|.+.+..++. .++++...+....
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999887777777778999999999998887653 3468999999999999999765444 4555555556788
Q ss_pred cEEEEcCCCcHHHHHHHHHHhcC-CeEEEEcCCCcccccceeeeEeecchh-------------------hhH-HHHHHH
Q 010876 273 QTLYWSATWPKEVEHLARQYLYN-PYKVIIGSPDLKANHAIRQHVDIVSES-------------------QKY-NKLVKL 331 (498)
Q Consensus 273 ~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~k~-~~l~~~ 331 (498)
|+|++|||+++ .+++++.+... +..+.. ... .....+...+...... ... .....+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~-~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPA-MRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCC-CcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 45666544332 444432 221 1111222111110000 000 111233
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHhhCC---------------------------------CCeEEecCCCCHHHHH
Q 010876 332 LEDIMDGSRILIFMDTKKGCDQITRQLRMDG---------------------------------WPALSIHGDKSQAERD 378 (498)
Q Consensus 332 l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~---------------------------------~~~~~lh~~~~~~~r~ 378 (498)
+..+....++||||||++.|+.++..|++.. +.+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 4444456789999999999999999997531 1256899999999999
Q ss_pred HHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC-CCcceEE
Q 010876 379 WVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA-GAKGTAY 439 (498)
Q Consensus 379 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~-g~~g~~~ 439 (498)
.+++.|++|++++||||+++++||||+++++||+++.|.+..+|+||+||+||. +..+.++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 999999999999999999999999999999999999999999999999999996 2234444
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.7e-41 Score=345.89 Aligned_cols=310 Identities=18% Similarity=0.224 Sum_probs=229.8
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCchHHHH---------HHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 010876 118 PIQAQGWPMALKGRDLIGIAETGSGKTLA---------YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 188 (498)
Q Consensus 118 ~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~---------~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~ 188 (498)
.+|.++++.+++++++|++|+||||||.+ |++|.+..+.... ......+++|++||++||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 37999999999999999999999999987 3344444432210 122356799999999999999999876
Q ss_pred hcCC---CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHH
Q 010876 189 FGAS---SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 265 (498)
Q Consensus 189 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~ 265 (498)
.... .+..+.+.+|+... .+........+|+|+|++.. ...+.++++|||||||.+..++ ..+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 5433 35667888998863 22222333679999996521 1247889999999999987664 4445555
Q ss_pred HhcC-CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecc----------hhhhHHHHHHHHHh
Q 010876 266 SQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS----------ESQKYNKLVKLLED 334 (498)
Q Consensus 266 ~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~~ 334 (498)
.... ..+|+++||||++.+++.+ ..++.++..+.+... ....+.+.+.... ...+. .+...+..
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~-~~l~~L~~ 389 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKK-NIVTALKK 389 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHH-HHHHHHHH
Confidence 4443 3359999999999888776 567778877766432 1233443332111 11222 23333333
Q ss_pred hc--CCCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHH-hcCCCcEEEEeccccccCCCCCCCE
Q 010876 335 IM--DGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEF-KAGKSPIMTATDVAARGLDVKDVKY 409 (498)
Q Consensus 335 ~~--~~~~vlIf~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f-~~g~~~vLvaT~~~~~Gldi~~v~~ 409 (498)
.. .++++||||+++.+|+.+++.|++. ++.+..+||++++. ++++++| ++|+.+|||||+++++|||||+|++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 21 3458999999999999999999876 68999999999975 4666777 7899999999999999999999999
Q ss_pred EEEcC---CCC---------ChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 410 VINYD---FPG---------SLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 410 VI~~~---~p~---------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
||+++ .|. |.++|+||+||+||. ++|.|+.|+++.+.
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99998 554 888999999999999 89999999998764
No 56
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.8e-40 Score=338.48 Aligned_cols=345 Identities=15% Similarity=0.167 Sum_probs=240.6
Q ss_pred CHHHHHHHHHhcCceEecCCCCCCcCCcccC---CCCHHHHHHHHHC--CCCCCcHHHHHHHHHhhcCCcEEEEcCCCch
Q 010876 68 SEREVEEYRQQREITVEGRDVPKPVKSFRDV---GFPDYVMQEISKA--GFFEPTPIQAQGWPMALKGRDLIGIAETGSG 142 (498)
Q Consensus 68 ~~~e~~~~~~~~~i~~~~~~~~~~~~~f~~~---~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsG 142 (498)
-.+.+..+.++..+...- +.+....+.+ .+..++....... +...|+++|.++++.++.+++.++++|||+|
T Consensus 65 ~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~Q~~av~~~l~~~~~il~apTGsG 141 (501)
T PHA02558 65 LVGQLKKFAKNRGYSIWV---DPRIEENEDISREDFDEWVSSLEIYSGNKKIEPHWYQYDAVYEGLKNNRRLLNLPTSAG 141 (501)
T ss_pred hHHHHHHHHHhcCCeEec---CcccccCCCCCHHHHHhHhhhcccccCCCcCCCCHHHHHHHHHHHhcCceEEEeCCCCC
Confidence 356777777777765532 2222222221 1222222222222 2358999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEc
Q 010876 143 KTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 222 (498)
Q Consensus 143 KT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~ 222 (498)
||+++... ....... ...++|||+||++|+.||.+.+.+++......+..+.+|.... ...+|+|+
T Consensus 142 KT~i~~~l-~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~Va 207 (501)
T PHA02558 142 KSLIQYLL-SRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVS 207 (501)
T ss_pred HHHHHHHH-HHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEe
Confidence 99876542 2222221 1337999999999999999999998755445555666665432 34689999
Q ss_pred ChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHH--HHHhcCCeEEE
Q 010876 223 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLA--RQYLYNPYKVI 300 (498)
Q Consensus 223 T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~--~~~~~~~~~~~ 300 (498)
|++++.+... ..+.++++||+||||++... .+..++..+++.+++++||||++....... ..++. ++...
T Consensus 208 T~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~ 279 (501)
T PHA02558 208 TWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFG-DIFKP 279 (501)
T ss_pred eHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEeccCCCccccHHHHHHhhC-CceEE
Confidence 9999876432 24678999999999998754 456677777678899999999965322111 11111 11111
Q ss_pred EcCCCcc------------------cc--c-----ceeeeE-eecchhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHH
Q 010876 301 IGSPDLK------------------AN--H-----AIRQHV-DIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQ 353 (498)
Q Consensus 301 ~~~~~~~------------------~~--~-----~~~~~~-~~~~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~ 353 (498)
+...++. .. . .....+ .......+...+..++..+. .+.+++|||++.++++.
T Consensus 280 v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~ 359 (501)
T PHA02558 280 VTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKP 359 (501)
T ss_pred ecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHH
Confidence 1100000 00 0 000000 01122334444555554433 34689999999999999
Q ss_pred HHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC
Q 010876 354 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 432 (498)
Q Consensus 354 l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~ 432 (498)
+++.|+..+.++..+||++++++|..+++.|++++..||||| +++++|+|+|++++||+++++.|...|+||+||++|.
T Consensus 360 L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~ 439 (501)
T PHA02558 360 LYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRK 439 (501)
T ss_pred HHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccC
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999998
Q ss_pred CCcce
Q 010876 433 GAKGT 437 (498)
Q Consensus 433 g~~g~ 437 (498)
+..+.
T Consensus 440 ~~~K~ 444 (501)
T PHA02558 440 HGSKS 444 (501)
T ss_pred CCCCc
Confidence 76543
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.6e-40 Score=346.40 Aligned_cols=304 Identities=20% Similarity=0.262 Sum_probs=233.4
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH-HhcCCCCceE
Q 010876 119 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-KFGASSKIKS 197 (498)
Q Consensus 119 ~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~-~~~~~~~~~~ 197 (498)
+-.+.+..+.+++++|++|+||||||++|.++++.... .+.+++|+.|+|++|.|+++.+. .++...+..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 34556667778899999999999999999999887652 24579999999999999999986 4554555555
Q ss_pred EEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccch-hhhcCCcHHH-HHHHHHhcCCCCcEE
Q 010876 198 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIRPDRQTL 275 (498)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h-~~~~~~~~~~-~~~i~~~~~~~~~~i 275 (498)
.....+.. ......+|+|+|+++|.+++.+. ..++++++|||||+| ++++.++... +..+...++++.|++
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 54444332 22345789999999999988764 568999999999999 5777665543 355666678899999
Q ss_pred EEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhH-----HHHHHHHHhhcCCCeEEEEeCCccc
Q 010876 276 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY-----NKLVKLLEDIMDGSRILIFMDTKKG 350 (498)
Q Consensus 276 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~vlIf~~s~~~ 350 (498)
+||||++.+. ...++.++..+.+... ...+.+.+......++. ..+..++.. ..+++|||++++.+
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~gr----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~e 221 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEGR----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQAE 221 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecCc----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHH
Confidence 9999998754 3455555444433221 12234444333333332 122233322 34689999999999
Q ss_pred HHHHHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCC----------
Q 010876 351 CDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG---------- 417 (498)
Q Consensus 351 ~~~l~~~L~~---~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~---------- 417 (498)
++.+++.|++ .++.+..+||++++++|..+++.|++|+.+|||||+++++|||||+|++||+++.|.
T Consensus 222 I~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~ 301 (819)
T TIGR01970 222 IRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGI 301 (819)
T ss_pred HHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCC
Confidence 9999999987 478899999999999999999999999999999999999999999999999999875
Q ss_pred --------ChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 418 --------SLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 418 --------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
|.++|.||.||+||. ++|.||.++++.+.
T Consensus 302 ~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 302 TRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred ceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 345699999999999 89999999997654
No 58
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=7.2e-41 Score=321.22 Aligned_cols=338 Identities=21% Similarity=0.302 Sum_probs=275.7
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010876 93 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 171 (498)
Q Consensus 93 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlv 171 (498)
...+++.+|+.+...++..|+.++.|+|.-++.. ++.|.|.+++++|+||||++..++-+..++. .+.+.||
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~Kmlf 266 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLF 266 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEE
Confidence 4567889999999999999999999999999988 7799999999999999999999988888776 3778999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH----HHHhcCCcEEEcChHHHHHHHhccCcccccccEEEec
Q 010876 172 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV----RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 247 (498)
Q Consensus 172 l~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~D 247 (498)
++|..+||+|.+++|+.-...+++++..-.|........ ......+||||+|++-+-.++..+ ..+.+++.||+|
T Consensus 267 LvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVID 345 (830)
T COG1202 267 LVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVID 345 (830)
T ss_pred EehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEee
Confidence 999999999999999987788888887777665433221 122345899999999996666655 678999999999
Q ss_pred cchhhhcCCcHHHHHHHHHhc---CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeec-chhh
Q 010876 248 EADRMLDMGFEPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV-SESQ 323 (498)
Q Consensus 248 E~h~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 323 (498)
|+|.+.+...++.+.-++..+ -+..|+|.+|||..+ -+++++.+....+.+.- .+..+...+.++ ...+
T Consensus 346 EiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN-p~elA~~l~a~lV~y~~------RPVplErHlvf~~~e~e 418 (830)
T COG1202 346 EIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN-PEELAKKLGAKLVLYDE------RPVPLERHLVFARNESE 418 (830)
T ss_pred eeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC-hHHHHHHhCCeeEeecC------CCCChhHeeeeecCchH
Confidence 999999877777777665554 478999999999966 56777777665554421 222333333344 4788
Q ss_pred hHHHHHHHHHhhc-------CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 010876 324 KYNKLVKLLEDIM-------DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 396 (498)
Q Consensus 324 k~~~l~~~l~~~~-------~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 396 (498)
|.+.+..+++.-. -.+++|||++|++.|..|+..|...|+++..+|++++..+|..+...|.++++.++|+|.
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 8888888876532 135899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEE---cCC-CCChhHHHHhhcccccCCC--cceEEEEeccc
Q 010876 397 VAARGLDVKDVKYVIN---YDF-PGSLEDYVHRIGRTGRAGA--KGTAYTFFTAA 445 (498)
Q Consensus 397 ~~~~Gldi~~v~~VI~---~~~-p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~ 445 (498)
+++.|+|+|.-.+++. .+. .-|+.+|.||.|||||.+- .|.+|+++.+.
T Consensus 499 AL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999997665441 222 3489999999999999875 48888887753
No 59
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.3e-39 Score=353.97 Aligned_cols=302 Identities=22% Similarity=0.278 Sum_probs=237.1
Q ss_pred HHHHC-CCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 010876 107 EISKA-GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 185 (498)
Q Consensus 107 ~l~~~-~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~ 185 (498)
.+++. |+ +|+++|.++++.++.|++++++||||+|||. |.++++..+.. .++++|||+||++|+.|+++.
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~ 142 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEK 142 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHH
Confidence 44343 55 8999999999999999999999999999996 55555555433 367899999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCCC-----chhHHHHh-cCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhc-----
Q 010876 186 STKFGASSKIKSTCIYGGVPK-----GPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD----- 254 (498)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~----- 254 (498)
+.+++...++.+..++++... ..+...+. ..++|+|+||++|.+++. .+...++++||+||||++++
T Consensus 143 l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 143 LEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccch
Confidence 999998888888777776542 22233334 358999999999998876 34456799999999999986
Q ss_pred ------CCcH-HHHHHHHHhcCC------------------------CCcEEEEcCCCcHH-HHHHHHHHhcCCeEEEEc
Q 010876 255 ------MGFE-PQIKKILSQIRP------------------------DRQTLYWSATWPKE-VEHLARQYLYNPYKVIIG 302 (498)
Q Consensus 255 ------~~~~-~~~~~i~~~~~~------------------------~~~~i~~SAT~~~~-~~~~~~~~~~~~~~~~~~ 302 (498)
++|. ..+..++..++. ..|++++|||+++. +.. .++.++..+.+.
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~ 297 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVG 297 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEec
Confidence 5674 567777766653 68999999999864 332 223344445554
Q ss_pred CCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCccc---HHHHHHHHhhCCCCeEEecCCCCHHHHHH
Q 010876 303 SPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKG---CDQITRQLRMDGWPALSIHGDKSQAERDW 379 (498)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~---~~~l~~~L~~~~~~~~~lh~~~~~~~r~~ 379 (498)
... ....++.+.+..+. ++...+..+++... .++||||+++.. |+.+++.|+..|+++..+||++ ..
T Consensus 298 ~~~-~~~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~ 367 (1176)
T PRK09401 298 SPV-FYLRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ER 367 (1176)
T ss_pred Ccc-cccCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HH
Confidence 443 23345555554443 56777888877653 479999999888 9999999999999999999999 23
Q ss_pred HHHHHhcCCCcEEEE----eccccccCCCCC-CCEEEEcCCCC------ChhHHHHhhcccccC
Q 010876 380 VLSEFKAGKSPIMTA----TDVAARGLDVKD-VKYVINYDFPG------SLEDYVHRIGRTGRA 432 (498)
Q Consensus 380 ~~~~f~~g~~~vLva----T~~~~~Gldi~~-v~~VI~~~~p~------s~~~~~Qr~GR~~R~ 432 (498)
.+++|++|+++|||| |++++||||+|+ +++||||+.|. ....|.||+||+...
T Consensus 368 ~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 368 KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 459999999999999 689999999999 89999999998 678899999999743
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.4e-40 Score=344.68 Aligned_cols=335 Identities=22% Similarity=0.290 Sum_probs=261.4
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHhh-cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 010876 98 VGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 176 (498)
Q Consensus 98 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l-~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~ 176 (498)
..+++.+.+.++..++.++++.|+.++...+ +++|+++++|||||||+++++.++..+.+. +.+++||||++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlk 86 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLK 86 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChH
Confidence 3477788888888888899999999987755 558999999999999999999999998873 56799999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC
Q 010876 177 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 256 (498)
Q Consensus 177 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~ 256 (498)
+||++.++++.++ ...+++|...+|+...... ...+++|+|+|||++-..+.+....+..+++||+||+|.+.+..
T Consensus 87 ALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 87 ALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 9999999999944 4678999999999876542 23468999999999987777766678899999999999999987
Q ss_pred cHHHHHHHHHhcC---CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchh-------hhHH
Q 010876 257 FEPQIKKILSQIR---PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES-------QKYN 326 (498)
Q Consensus 257 ~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~k~~ 326 (498)
.++.++.++...+ ...+++++|||+|+ ..+++.....++.........+.......+.+...... ....
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHH
Confidence 7888888877765 34799999999997 77777776665552222222222222222223222211 2233
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC------------------C-------------------CCeEEec
Q 010876 327 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------G-------------------WPALSIH 369 (498)
Q Consensus 327 ~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~------------------~-------------------~~~~~lh 369 (498)
.+..++..+.+++++||||++++.+...++.|+.. . ..+..+|
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 44445555667889999999999999888888720 0 1245789
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEE----EcC-----CCCChhHHHHhhcccccCCCc--ceE
Q 010876 370 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----NYD-----FPGSLEDYVHRIGRTGRAGAK--GTA 438 (498)
Q Consensus 370 ~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI----~~~-----~p~s~~~~~Qr~GR~~R~g~~--g~~ 438 (498)
++++.++|..+.+.|+.|.++||+||++++.|+|+|.-.+|| .|+ .+.+..++.||+|||||.|-+ |.+
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~ 401 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEA 401 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcE
Confidence 999999999999999999999999999999999999877777 355 345789999999999999865 666
Q ss_pred EEEecc
Q 010876 439 YTFFTA 444 (498)
Q Consensus 439 ~~~~~~ 444 (498)
+++.+.
T Consensus 402 ~i~~~~ 407 (766)
T COG1204 402 IILATS 407 (766)
T ss_pred EEEecC
Confidence 666633
No 61
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.3e-39 Score=327.57 Aligned_cols=316 Identities=22% Similarity=0.270 Sum_probs=248.9
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.|+|+|..+++.+++|+ |+.+.||+|||++|.+|++.+... ++.++|++||++||.|.++++..+....+
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~~~lG 172 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLYEALG 172 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHHhhcC
Confidence 89999999999999998 999999999999999999987654 67899999999999999999999999999
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHH-HHHHhccC-------------------------cccccccEEEecc
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN-------------------------TNLRRVTYLVLDE 248 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-~~~l~~~~-------------------------~~l~~~~~vI~DE 248 (498)
+++.+++|+.+ .+.+....+++|+++|...| .|+|.... .....+.+.|+||
T Consensus 173 lsv~~i~gg~~--~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDE 250 (656)
T PRK12898 173 LTVGCVVEDQS--PDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDE 250 (656)
T ss_pred CEEEEEeCCCC--HHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeec
Confidence 99999999975 34555667899999998776 34443221 1235678999999
Q ss_pred chhhh-c--------------C---CcH--------------------------------HHHHHHH-------------
Q 010876 249 ADRML-D--------------M---GFE--------------------------------PQIKKIL------------- 265 (498)
Q Consensus 249 ~h~~~-~--------------~---~~~--------------------------------~~~~~i~------------- 265 (498)
+|.++ | . .+. ..++.++
T Consensus 251 vDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~ 330 (656)
T PRK12898 251 ADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRR 330 (656)
T ss_pred ccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHH
Confidence 99754 0 0 000 0011110
Q ss_pred -----Hhc------C-------------------------------------------------------------CCCc
Q 010876 266 -----SQI------R-------------------------------------------------------------PDRQ 273 (498)
Q Consensus 266 -----~~~------~-------------------------------------------------------------~~~~ 273 (498)
..+ . .-.+
T Consensus 331 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~k 410 (656)
T PRK12898 331 EELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLR 410 (656)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHH
Confidence 000 0 0025
Q ss_pred EEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHH
Q 010876 274 TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCD 352 (498)
Q Consensus 274 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~ 352 (498)
+.+||||.+....++...|..++..+-...+. .....+.+..++..+|...|.+.+.... .+.++||||+|+..++
T Consensus 411 l~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 411 LAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred HhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 67999999988888888888877665443332 2223344455677889999999888754 3468999999999999
Q ss_pred HHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC---CCC-----EEEEcCCCCChhHHHH
Q 010876 353 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---DVK-----YVINYDFPGSLEDYVH 424 (498)
Q Consensus 353 ~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~---~v~-----~VI~~~~p~s~~~~~Q 424 (498)
.++..|...++++..+||.++ +|+..+..|..+...|+|||++++||+||+ +|. +||++++|.|...|.|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 999999999999999999865 555556666666678999999999999999 666 9999999999999999
Q ss_pred hhcccccCCCcceEEEEeccccH
Q 010876 425 RIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 425 r~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
|+||+||.|.+|.++.|++..|.
T Consensus 566 r~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 566 LAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred hcccccCCCCCeEEEEEechhHH
Confidence 99999999999999999998653
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.3e-39 Score=341.56 Aligned_cols=304 Identities=19% Similarity=0.293 Sum_probs=232.3
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hcCCCCceE
Q 010876 119 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKS 197 (498)
Q Consensus 119 ~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~-~~~~~~~~~ 197 (498)
+-.+.+..+.++++++++|+||||||++|.++++..... ..+++|++|||++|.|+++.+.+ ++...+..+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--------CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 345566677788999999999999999999888865321 24799999999999999999864 555566666
Q ss_pred EEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh-hhcCCc-HHHHHHHHHhcCCCCcEE
Q 010876 198 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGF-EPQIKKILSQIRPDRQTL 275 (498)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~-~~~~~~-~~~~~~i~~~~~~~~~~i 275 (498)
....++... ......|+|+|+++|.+++..+ ..++++++|||||+|. .++.++ ...+..+++.++++.|++
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEE
Confidence 666655432 1234689999999999988764 4689999999999996 444443 233455667778899999
Q ss_pred EEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHH-----HHHHHHHhhcCCCeEEEEeCCccc
Q 010876 276 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYN-----KLVKLLEDIMDGSRILIFMDTKKG 350 (498)
Q Consensus 276 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~vlIf~~s~~~ 350 (498)
+||||++.+. + ..++.++..+.+... ...+.+.+.......+.. .+..++.. ..+.+||||+++.+
T Consensus 154 lmSATl~~~~--l-~~~~~~~~~I~~~gr----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~e 224 (812)
T PRK11664 154 IMSATLDNDR--L-QQLLPDAPVIVSEGR----SFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGVGE 224 (812)
T ss_pred EEecCCCHHH--H-HHhcCCCCEEEecCc----cccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHHH
Confidence 9999998652 3 455555444433221 122444443333333332 22233322 35789999999999
Q ss_pred HHHHHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCC----------
Q 010876 351 CDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG---------- 417 (498)
Q Consensus 351 ~~~l~~~L~~---~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~---------- 417 (498)
++.+++.|+. .++.+..+||++++++|+.++..|++|+.+|||||+++++|||||+|++||+++.+.
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 9999999986 578899999999999999999999999999999999999999999999999988764
Q ss_pred --------ChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 418 --------SLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 418 --------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
|.++|.||.||+||. +.|.||.++++.+.
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred ceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 446899999999999 79999999997643
No 63
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=5.1e-39 Score=358.15 Aligned_cols=326 Identities=19% Similarity=0.244 Sum_probs=247.3
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHH
Q 010876 103 YVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 181 (498)
Q Consensus 103 ~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q 181 (498)
.+.+.+++ .|| +|+++|.++++.+++|++++++||||+|||++++++++.... .++++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHH
Confidence 34455655 788 799999999999999999999999999999966665554422 26789999999999999
Q ss_pred HHHHHHHhcCCC--CceEEEEeCCCCCchhH---HHHhc-CCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhc-
Q 010876 182 IQQESTKFGASS--KIKSTCIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD- 254 (498)
Q Consensus 182 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~-~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~- 254 (498)
+++.+..++... ++.+..++|+.+..++. ..+.. .++|+|+||++|.+.+.... ..+++++|+||||+|++
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~--~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK--HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh--hCCCCEEEEECceecccc
Confidence 999999987764 45667788888765543 23444 48999999999988765421 26789999999999986
Q ss_pred ----------CCcHHHHHH----HHH----------------------hcCCCCc-EEEEcCCCcHHHHHHHHHHhcCCe
Q 010876 255 ----------MGFEPQIKK----ILS----------------------QIRPDRQ-TLYWSATWPKEVEHLARQYLYNPY 297 (498)
Q Consensus 255 ----------~~~~~~~~~----i~~----------------------~~~~~~~-~i~~SAT~~~~~~~~~~~~~~~~~ 297 (498)
++|.+.+.. ++. .+++..| ++++|||++.... . ..++.++.
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~-~~l~~~~l 293 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-R-VKLYRELL 293 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-H-HHHhhcCe
Confidence 478777754 322 2234555 5679999985311 1 13345666
Q ss_pred EEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCccc---HHHHHHHHhhCCCCeEEecCCCCH
Q 010876 298 KVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKG---CDQITRQLRMDGWPALSIHGDKSQ 374 (498)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~---~~~l~~~L~~~~~~~~~lh~~~~~ 374 (498)
.+.++... .....+.+.+..+....+ ..+.++++.. +..+||||++++. |+.+++.|+..|+++..+|++
T Consensus 294 ~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 294 GFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 66665544 334455565554544444 5677777765 4579999999886 589999999999999999995
Q ss_pred HHHHHHHHHHhcCCCcEEEEe----ccccccCCCCC-CCEEEEcCCCC---ChhHHHHhh-------------cccccCC
Q 010876 375 AERDWVLSEFKAGKSPIMTAT----DVAARGLDVKD-VKYVINYDFPG---SLEDYVHRI-------------GRTGRAG 433 (498)
Q Consensus 375 ~~r~~~~~~f~~g~~~vLvaT----~~~~~Gldi~~-v~~VI~~~~p~---s~~~~~Qr~-------------GR~~R~g 433 (498)
|..++++|++|+++||||| ++++||||+|+ |++|||+|.|. +.+.|.|.. ||++|.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8899999999999999999 58999999999 99999999999 887776655 9999999
Q ss_pred CcceEEEEeccccHHHH
Q 010876 434 AKGTAYTFFTAANARFA 450 (498)
Q Consensus 434 ~~g~~~~~~~~~~~~~~ 450 (498)
....++..+...+...+
T Consensus 445 ~~~~~~~~~~~~~~~~~ 461 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFL 461 (1638)
T ss_pred CcchhHHHhHHHHHHHH
Confidence 88777744444443333
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=5.7e-39 Score=318.24 Aligned_cols=299 Identities=22% Similarity=0.245 Sum_probs=211.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCc----
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKG---- 207 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~---- 207 (498)
++++++|||||||++|++|++..+... ...+++|++|+++|+.|+++.+..+... .+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 479999999999999999999876542 3568999999999999999999986432 233333322110
Q ss_pred --------hhHHHH------hcCCcEEEcChHHHHHHHhccC----cccc--cccEEEeccchhhhcCCcHHHHHHHHHh
Q 010876 208 --------PQVRDL------QKGVEIVIATPGRLIDMLESHN----TNLR--RVTYLVLDEADRMLDMGFEPQIKKILSQ 267 (498)
Q Consensus 208 --------~~~~~~------~~~~~Ivi~T~~~l~~~l~~~~----~~l~--~~~~vI~DE~h~~~~~~~~~~~~~i~~~ 267 (498)
...... ....+|+|+||+++...+.... ..+. ..++||+||+|.+.+..+.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 000001 1135799999999988765521 1111 23789999999998765433 5555544
Q ss_pred cC-CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEe--ecchhhhHHHHHHHHHhhcCCCeEEEE
Q 010876 268 IR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD--IVSESQKYNKLVKLLEDIMDGSRILIF 344 (498)
Q Consensus 268 ~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~l~~~l~~~~~~~~vlIf 344 (498)
+. .+.|+++||||+|+.+.+++......+........... ....+.+. ......+...+..++.....+.++|||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER--RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc--ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 43 57899999999998777776655433221111111000 00111111 112234555666666665567899999
Q ss_pred eCCcccHHHHHHHHhhCCC--CeEEecCCCCHHHHHH----HHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCC
Q 010876 345 MDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDW----VLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 418 (498)
Q Consensus 345 ~~s~~~~~~l~~~L~~~~~--~~~~lh~~~~~~~r~~----~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s 418 (498)
|+++++|+.+++.|++.+. .+..+||++++.+|.. +++.|++++.+|||||+++++|+|++ +++||++..|
T Consensus 229 ~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~-- 305 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP-- 305 (358)
T ss_pred ECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--
Confidence 9999999999999987765 4899999999999976 48899999999999999999999995 8899988877
Q ss_pred hhHHHHhhcccccCCCc----ceEEEEeccc
Q 010876 419 LEDYVHRIGRTGRAGAK----GTAYTFFTAA 445 (498)
Q Consensus 419 ~~~~~Qr~GR~~R~g~~----g~~~~~~~~~ 445 (498)
.++|+||+||+||.|+. |..++|....
T Consensus 306 ~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 306 IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 78999999999998864 3677776644
No 65
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.8e-37 Score=339.78 Aligned_cols=292 Identities=19% Similarity=0.312 Sum_probs=219.1
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 010876 103 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 182 (498)
Q Consensus 103 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~ 182 (498)
.+.+.+.+....+|+++|+.+++.++.|++++++||||+|||+ |.+|++..+.. .++++|||+||++||.|+
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi 137 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQV 137 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHH
Confidence 3444555555568999999999999999999999999999997 66666666543 267899999999999999
Q ss_pred HHHHHHhcCCCCceEE---EEeCCCCCchhH---HHHhc-CCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhc-
Q 010876 183 QQESTKFGASSKIKST---CIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD- 254 (498)
Q Consensus 183 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~-~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~- 254 (498)
++.+.++....++.+. +++|+.+...+. ..+.+ +++|+|+||++|.+.+.... . +++++|+||||+|++
T Consensus 138 ~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 138 AEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhc
Confidence 9999999877665543 466777655432 23333 58999999999988776422 2 899999999999997
Q ss_pred ----------CCcHHH-HHHHH----------------------HhcCCCCc--EEEEcCC-CcHHHHHHHHHHhcCCeE
Q 010876 255 ----------MGFEPQ-IKKIL----------------------SQIRPDRQ--TLYWSAT-WPKEVEHLARQYLYNPYK 298 (498)
Q Consensus 255 ----------~~~~~~-~~~i~----------------------~~~~~~~~--~i~~SAT-~~~~~~~~~~~~~~~~~~ 298 (498)
++|... ++.++ +.++...| ++++||| +|..+.. .++.+...
T Consensus 215 ~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~ 291 (1171)
T TIGR01054 215 SKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLG 291 (1171)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccc
Confidence 567653 44432 23344445 5678999 5654432 23444444
Q ss_pred EEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCc---ccHHHHHHHHhhCCCCeEEecCCCCHH
Q 010876 299 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTK---KGCDQITRQLRMDGWPALSIHGDKSQA 375 (498)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~---~~~~~l~~~L~~~~~~~~~lh~~~~~~ 375 (498)
+.++... ....++.+.+..... +...+.++++.. +.++||||+++ +.|+.++..|+..|+++..+||++++
T Consensus 292 ~~v~~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 292 FEVGGGS-DTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred eEecCcc-ccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 5554433 233445555443322 245566777664 35799999999 99999999999999999999999973
Q ss_pred HHHHHHHHHhcCCCcEEEEe----ccccccCCCCC-CCEEEEcCCCC
Q 010876 376 ERDWVLSEFKAGKSPIMTAT----DVAARGLDVKD-VKYVINYDFPG 417 (498)
Q Consensus 376 ~r~~~~~~f~~g~~~vLvaT----~~~~~Gldi~~-v~~VI~~~~p~ 417 (498)
.+++.|++|+++||||| ++++||||+|+ +++|||||.|.
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 68999999999999994 89999999999 89999988764
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.3e-37 Score=321.60 Aligned_cols=319 Identities=20% Similarity=0.261 Sum_probs=241.7
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 010876 112 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 191 (498)
Q Consensus 112 ~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~ 191 (498)
|+ .|+++|..+...+.+|+ |+.+.||+|||++|++|++..... ++.++|++||++||.|.++++..+..
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 54 89999999999888776 999999999999999999877665 67799999999999999999999999
Q ss_pred CCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHH-HHHHhcc------CcccccccEEEeccchhhhcC---------
Q 010876 192 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRMLDM--------- 255 (498)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-~~~l~~~------~~~l~~~~~vI~DE~h~~~~~--------- 255 (498)
..++.+.++.|+.+...+.+ ....++|+++||++| .+++... ...+..+.++|+||+|.|+=.
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 99999999999987433333 345689999999998 5555432 134678899999999986510
Q ss_pred -------CcHHHHHHHHHhcCCC---------------------------------------------------------
Q 010876 256 -------GFEPQIKKILSQIRPD--------------------------------------------------------- 271 (498)
Q Consensus 256 -------~~~~~~~~i~~~~~~~--------------------------------------------------------- 271 (498)
.+......++..+...
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 0111111111111000
Q ss_pred ------------------------------------------------------------CcEEEEcCCCcHHHHHHHHH
Q 010876 272 ------------------------------------------------------------RQTLYWSATWPKEVEHLARQ 291 (498)
Q Consensus 272 ------------------------------------------------------------~~~i~~SAT~~~~~~~~~~~ 291 (498)
..+.+||+|...+..++...
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~ 383 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV 383 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH
Confidence 14456666665444444444
Q ss_pred HhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecC
Q 010876 292 YLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG 370 (498)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~ 370 (498)
|..+... +.... .....-..........+|...+.+.+... ..+.++||||+|+..++.++..|.+.++++..+|+
T Consensus 384 Y~l~v~~--IPt~k-p~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 384 YNMEVVQ--IPTNR-PIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred hCCcEEE--CCCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 4322221 11111 11111111233456678899898888764 35669999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC---CCCC-----EEEEcCCCCChhHHHHhhcccccCCCcceEEEEe
Q 010876 371 DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV---KDVK-----YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 442 (498)
Q Consensus 371 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi---~~v~-----~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 442 (498)
.+.+.++..+...++.| .|+|||++++||+|| ++|. +||++++|.|...|.||+||+||.|.+|.++.|+
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 99998888887777765 799999999999999 6898 9999999999999999999999999999999999
Q ss_pred ccccH
Q 010876 443 TAANA 447 (498)
Q Consensus 443 ~~~~~ 447 (498)
+..|.
T Consensus 539 s~eD~ 543 (790)
T PRK09200 539 SLEDD 543 (790)
T ss_pred cchHH
Confidence 88653
No 67
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1e-38 Score=296.70 Aligned_cols=309 Identities=30% Similarity=0.480 Sum_probs=240.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhc---CCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccE
Q 010876 167 PIVLVLAPTRELAVQIQQESTKFG---ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 243 (498)
Q Consensus 167 ~~vlvl~P~~~La~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~ 243 (498)
|..+|+-|+++||+|.+..+++|. ....++...+.||...+.|...+.++.+|+|+||+++.+.+..+...+..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 678999999999999999777664 34446667888999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhcCCcHHHHHHHHHhcC------CCCcEEEEcCCCcH-HHHHHHHHHhcCCeEEEEcCCCcccccceeeeE
Q 010876 244 LVLDEADRMLDMGFEPQIKKILSQIR------PDRQTLYWSATWPK-EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV 316 (498)
Q Consensus 244 vI~DE~h~~~~~~~~~~~~~i~~~~~------~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (498)
+++||++.++..++...+.++...++ ..+|.+..|||+.. ++..+.++.+.-|.-+.....+ .....+.+.+
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv 445 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVV 445 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccce
Confidence 99999999999998888888877765 35789999999742 3445555555555555444333 1222222222
Q ss_pred eecc------------------------------hhhhHHHHHHH---------HHhhcCCCeEEEEeCCcccHHHHHHH
Q 010876 317 DIVS------------------------------ESQKYNKLVKL---------LEDIMDGSRILIFMDTKKGCDQITRQ 357 (498)
Q Consensus 317 ~~~~------------------------------~~~k~~~l~~~---------l~~~~~~~~vlIf~~s~~~~~~l~~~ 357 (498)
..+. +.+.......+ +++ ....+.||||.++..|+.|.++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~-h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRR-HAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhh-hccCceEEEEeccccchHHHHH
Confidence 1110 00111111111 222 1335899999999999999999
Q ss_pred HhhCC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCC
Q 010876 358 LRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA 434 (498)
Q Consensus 358 L~~~~---~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~ 434 (498)
+++.+ +.+..+||+..+.+|.+.++.|+....++||||+++++|+||..+-+|||..+|.+...|+|||||+||+.+
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraer 604 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAER 604 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhh
Confidence 98764 679999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceEEEEecc--------------------------------ccHHHHHHHHHHHHHhCCCCCHHHHhhhcCCCC
Q 010876 435 KGTAYTFFTA--------------------------------ANARFAKELITILEEAGQKVSPELAAMGRGAPP 477 (498)
Q Consensus 435 ~g~~~~~~~~--------------------------------~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~ 477 (498)
-|.++.++.- ++...+.++.+.|....+.+.+.+.--+....|
T Consensus 605 mglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~vpv~~fdg 679 (725)
T KOG0349|consen 605 MGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVNDFDG 679 (725)
T ss_pred cceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCCCCcccccCC
Confidence 8988877642 233567777777777777777777666655544
No 68
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2e-36 Score=328.20 Aligned_cols=323 Identities=25% Similarity=0.314 Sum_probs=241.6
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 113 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 113 ~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
..+|++||.+++..++.+ ++++++|||+|||++|++++...+.. .+.++|||+|+++|+.|+.+.+.++...
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 358999999999998887 99999999999999999888777632 2567999999999999999999988655
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCC
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 272 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~ 272 (498)
....+..+.|+..... ...+....+|+|+||+.+...+......+.++++|||||||++........+........+.+
T Consensus 85 ~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 4556777777765543 334455679999999999888777777888999999999999876543344444444444567
Q ss_pred cEEEEcCCCcHH---HHHHHHHHhcCCeEEE--------------------EcCCC------------------------
Q 010876 273 QTLYWSATWPKE---VEHLARQYLYNPYKVI--------------------IGSPD------------------------ 305 (498)
Q Consensus 273 ~~i~~SAT~~~~---~~~~~~~~~~~~~~~~--------------------~~~~~------------------------ 305 (498)
++++||||+... +..++..+....+.+. +....
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 899999997322 2222222111100000 00000
Q ss_pred cc--cc------------cceeee--------------------------------------------------------
Q 010876 306 LK--AN------------HAIRQH-------------------------------------------------------- 315 (498)
Q Consensus 306 ~~--~~------------~~~~~~-------------------------------------------------------- 315 (498)
.. .. ..+...
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 00 00 000000
Q ss_pred ----------------EeecchhhhHHHHHHHHHhh---cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCC-----
Q 010876 316 ----------------VDIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD----- 371 (498)
Q Consensus 316 ----------------~~~~~~~~k~~~l~~~l~~~---~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~----- 371 (498)
..+.....|...|.++|.+. ..+.++||||+++.+|+.|++.|...++++..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 00011234556666666654 345699999999999999999999999999999886
Q ss_pred ---CCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccc
Q 010876 372 ---KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 445 (498)
Q Consensus 372 ---~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 445 (498)
+++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.+ .|.+++++..+
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~ 479 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKG 479 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999985 48888888765
No 69
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=6.5e-37 Score=308.89 Aligned_cols=333 Identities=25% Similarity=0.283 Sum_probs=241.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 010876 100 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 179 (498)
Q Consensus 100 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La 179 (498)
+++...+...--....+++||.+.+..+| ++++|+++|||+|||+++...++.|+...+ ..+++|++|++-|+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLV 119 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHH
Confidence 44444444444455689999999999999 999999999999999999999999988864 46799999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcc-cccccEEEeccchhhhcCC-c
Q 010876 180 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTN-LRRVTYLVLDEADRMLDMG-F 257 (498)
Q Consensus 180 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~-l~~~~~vI~DE~h~~~~~~-~ 257 (498)
.|....+..++.. ..+....++.........+....+|+|+||+.+.+-|.....+ ++.+.++||||||+-.... |
T Consensus 120 ~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y 197 (746)
T KOG0354|consen 120 NQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPY 197 (746)
T ss_pred HHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccH
Confidence 9999778887765 5566666665444444466677899999999999888775443 5899999999999876544 4
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHH---HHhcCCeEEE----------------------------------
Q 010876 258 EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR---QYLYNPYKVI---------------------------------- 300 (498)
Q Consensus 258 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~---~~~~~~~~~~---------------------------------- 300 (498)
...++..+.......|+|++|||+.+..+.... .++.. ..+.
T Consensus 198 ~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~ 276 (746)
T KOG0354|consen 198 NNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFG 276 (746)
T ss_pred HHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHH
Confidence 555556665555556999999997544322211 11100 0000
Q ss_pred -----------------EcCCC-----------cccccc--eeee--Ee-------------------------------
Q 010876 301 -----------------IGSPD-----------LKANHA--IRQH--VD------------------------------- 317 (498)
Q Consensus 301 -----------------~~~~~-----------~~~~~~--~~~~--~~------------------------------- 317 (498)
+.... ...... -.+. +.
T Consensus 277 ~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~ 356 (746)
T KOG0354|consen 277 MIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYE 356 (746)
T ss_pred HHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhcc
Confidence 00000 000000 0000 00
Q ss_pred -------------------------------e--cchhhhHHHHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHhh-
Q 010876 318 -------------------------------I--VSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRM- 360 (498)
Q Consensus 318 -------------------------------~--~~~~~k~~~l~~~l~~~~---~~~~vlIf~~s~~~~~~l~~~L~~- 360 (498)
. .....|+..+.+.+.+.. +..++||||.++..|+.|..+|.+
T Consensus 357 e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~ 436 (746)
T KOG0354|consen 357 EVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL 436 (746)
T ss_pred ccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh
Confidence 0 011345555555554432 345899999999999999999973
Q ss_pred --CCCCeEEec--------CCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccc
Q 010876 361 --DGWPALSIH--------GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTG 430 (498)
Q Consensus 361 --~~~~~~~lh--------~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~ 430 (498)
.+++...+- .+|++.++.++++.|++|+++|||||+++++|+||+.|+.||.||...|+..++||.|| |
T Consensus 437 ~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-g 515 (746)
T KOG0354|consen 437 HELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-G 515 (746)
T ss_pred hhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-c
Confidence 244444443 37999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cCCCcceEEEEecc
Q 010876 431 RAGAKGTAYTFFTA 444 (498)
Q Consensus 431 R~g~~g~~~~~~~~ 444 (498)
|. +.|.++++++.
T Consensus 516 Ra-~ns~~vll~t~ 528 (746)
T KOG0354|consen 516 RA-RNSKCVLLTTG 528 (746)
T ss_pred cc-cCCeEEEEEcc
Confidence 98 78999999883
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=7.6e-37 Score=314.63 Aligned_cols=319 Identities=18% Similarity=0.188 Sum_probs=235.1
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.++|+|.|++..+..++..|+.++||+|||++|++|++.+... ++.++||+|+++||.|+++++..+...++
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 4566666666665555668999999999999999998777654 45699999999999999999999999999
Q ss_pred ceEEEEeCCCC---CchhHHHHhcCCcEEEcChHHH-HHHHhc------cCcccccccEEEeccchhhhcCC--------
Q 010876 195 IKSTCIYGGVP---KGPQVRDLQKGVEIVIATPGRL-IDMLES------HNTNLRRVTYLVLDEADRMLDMG-------- 256 (498)
Q Consensus 195 ~~~~~~~~~~~---~~~~~~~~~~~~~Ivi~T~~~l-~~~l~~------~~~~l~~~~~vI~DE~h~~~~~~-------- 256 (498)
+.+.+++++.. .....+....+++|+++||++| .+++.. ....+..+.++|+||||.|+-..
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 99988877632 2233344456799999999999 555532 23346789999999999875110
Q ss_pred --------cHHHHHHHHHhcCC----------------------------------------------------------
Q 010876 257 --------FEPQIKKILSQIRP---------------------------------------------------------- 270 (498)
Q Consensus 257 --------~~~~~~~i~~~~~~---------------------------------------------------------- 270 (498)
.......++..+.+
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 00111111111100
Q ss_pred -----------------------------------------------------------CCcEEEEcCCCcHHHHHHHHH
Q 010876 271 -----------------------------------------------------------DRQTLYWSATWPKEVEHLARQ 291 (498)
Q Consensus 271 -----------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~ 291 (498)
-.++.+||+|...+..++...
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 024567777765555555544
Q ss_pred HhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecC
Q 010876 292 YLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG 370 (498)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~ 370 (498)
|..+... +.... .....-...........|...+.+.+.+. ..+.++||||+++..++.++..|.+.++++..+|+
T Consensus 380 Y~l~v~~--IPt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 380 YSLSVVK--IPTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred hCCCEEE--cCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 4322221 11111 11111122234456678888888888764 45669999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC---------CCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEE
Q 010876 371 DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 441 (498)
Q Consensus 371 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~---------~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 441 (498)
.+.+.++..+...++.| .|+|||++++||+||+ ++.+|+++++|....+ .||+||+||.|.+|.++.|
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~ 533 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFF 533 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEE
Confidence 99998888887777666 6999999999999999 8999999999988766 9999999999999999999
Q ss_pred eccccH
Q 010876 442 FTAANA 447 (498)
Q Consensus 442 ~~~~~~ 447 (498)
++..|.
T Consensus 534 is~eD~ 539 (762)
T TIGR03714 534 VSLEDD 539 (762)
T ss_pred Eccchh
Confidence 998654
No 71
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=317.22 Aligned_cols=383 Identities=22% Similarity=0.288 Sum_probs=273.0
Q ss_pred cccCCCHHHHHHHHHhcCceEecCCCCCCcCCcccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHhhc-CCcEEEEc
Q 010876 63 SVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIA 137 (498)
Q Consensus 63 ~~~~~~~~e~~~~~~~~~i~~~~~~~~~~~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~-~~~~i~~a 137 (498)
.+.....++.+++..+.++.+ +...|-+ ..-.++ .++..-.+. -.+|..++.+|.+++|.+.. ..|+|+||
T Consensus 58 k~~lp~~~~r~~~~~~eE~~~-P~s~~~~-~~~~k~~~isdld~~~rk~--~f~f~~fN~iQS~vFp~aY~SneNMLIcA 133 (1230)
T KOG0952|consen 58 KFTLPEGSEREDYKTYEEVKI-PASVPMP-MDGEKLLSISDLDDVGRKG--FFSFEEFNRIQSEVFPVAYKSNENMLICA 133 (1230)
T ss_pred eEeccCCccccccCcceEEec-CccCCCc-cccccceeEEecchhhhhh--cccHHHHHHHHHHhhhhhhcCCCCEEEEC
Confidence 344444556666666666655 2223333 111111 123222212 25677899999999999985 56899999
Q ss_pred CCCchHHHHHHHHHHHHHhcCC--CCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhc
Q 010876 138 ETGSGKTLAYLLPAIVHVNAQP--FLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQK 215 (498)
Q Consensus 138 ~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (498)
|||||||.+|++.++..+.++. .....+..+++||+|+++||.++.+.+.+-....++.|..++|++...... ..
T Consensus 134 PTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~ 210 (1230)
T KOG0952|consen 134 PTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE---IA 210 (1230)
T ss_pred CCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH---HH
Confidence 9999999999999998887521 222345788999999999999999999887778899999999998754433 34
Q ss_pred CCcEEEcChHHHHHHHhccC----cccccccEEEeccchhhhcCCcHHHHHHHHHhc-------CCCCcEEEEcCCCcHH
Q 010876 216 GVEIVIATPGRLIDMLESHN----TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-------RPDRQTLYWSATWPKE 284 (498)
Q Consensus 216 ~~~Ivi~T~~~l~~~l~~~~----~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~-------~~~~~~i~~SAT~~~~ 284 (498)
.++|+|+|||++ |.+.+.. ..++.+.+||+||+|.+.+. .++.++.|+.+. ....+++++|||+|+
T Consensus 211 ~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN- 287 (1230)
T KOG0952|consen 211 DTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETIVARTLRLVESSQSMIRIVGLSATLPN- 287 (1230)
T ss_pred hcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHHHHHHHHHHHhhhhheEEEEeeccCCC-
Confidence 589999999998 6555432 23677899999999987776 488888887654 357889999999997
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchh---hh-----HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHH
Q 010876 285 VEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES---QK-----YNKLVKLLEDIMDGSRILIFMDTKKGCDQITR 356 (498)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k-----~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~ 356 (498)
.+++++.+..++..-.+.......+..+.+.+.-.... .+ .....+.++.+..+.+++|||+++..+-..|+
T Consensus 288 ~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~ 367 (1230)
T KOG0952|consen 288 YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAK 367 (1230)
T ss_pred HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHH
Confidence 77888877666432222222223333444443322221 11 11122334445568899999999999988888
Q ss_pred HHhhC----C-------------------CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEE--
Q 010876 357 QLRMD----G-------------------WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI-- 411 (498)
Q Consensus 357 ~L~~~----~-------------------~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI-- 411 (498)
.|.+. + .....+|++|...+|..+.+.|..|.++||+||.++++|+|+|+-.++|
T Consensus 368 ~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKG 447 (1230)
T KOG0952|consen 368 KLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKG 447 (1230)
T ss_pred HHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecC
Confidence 88542 1 1234789999999999999999999999999999999999999877666
Q ss_pred --EcCCCC------ChhHHHHhhcccccCC--CcceEEEEeccccHHHHHHHHH
Q 010876 412 --NYDFPG------SLEDYVHRIGRTGRAG--AKGTAYTFFTAANARFAKELIT 455 (498)
Q Consensus 412 --~~~~p~------s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~l~~ 455 (498)
.||... .+.+.+|.+|||||.. ..|.++++.+.+....+..|+.
T Consensus 448 T~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~ 501 (1230)
T KOG0952|consen 448 TQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLT 501 (1230)
T ss_pred CcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHc
Confidence 244322 5778999999999964 4589998888877666666654
No 72
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=4.1e-36 Score=307.25 Aligned_cols=316 Identities=21% Similarity=0.242 Sum_probs=241.3
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.|+++|..+...+..|+ |+.++||+|||++|.+|++..... +..|+|++||++||.|.++++..+...++
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~LG 125 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFLG 125 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 78899999888877765 999999999999999999655554 44599999999999999999999999999
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHH-HHHHhcc------CcccccccEEEeccchhhhc-CCcH--------
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRMLD-MGFE-------- 258 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-~~~l~~~------~~~l~~~~~vI~DE~h~~~~-~~~~-------- 258 (498)
+++.+++++....... ....++|+++||.+| .+++... ...++.+.++|+||+|+++- ....
T Consensus 126 Lsv~~i~g~~~~~~r~--~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~ 203 (745)
T TIGR00963 126 LSVGLILSGMSPEERR--EAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPA 203 (745)
T ss_pred CeEEEEeCCCCHHHHH--HhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCC
Confidence 9999999988754333 333589999999999 8888665 34678899999999998652 0000
Q ss_pred -------HHHHHHHHhcC--------------------------------------------------------------
Q 010876 259 -------PQIKKILSQIR-------------------------------------------------------------- 269 (498)
Q Consensus 259 -------~~~~~i~~~~~-------------------------------------------------------------- 269 (498)
.....+...+.
T Consensus 204 ~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYi 283 (745)
T TIGR00963 204 EKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYI 283 (745)
T ss_pred CCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 00000100000
Q ss_pred -------------------------------------------------------CCCcEEEEcCCCcHHHHHHHHHHhc
Q 010876 270 -------------------------------------------------------PDRQTLYWSATWPKEVEHLARQYLY 294 (498)
Q Consensus 270 -------------------------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~ 294 (498)
.-.++.+||+|...+..++...|..
T Consensus 284 V~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 363 (745)
T TIGR00963 284 VRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL 363 (745)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC
Confidence 0024567777776555555555544
Q ss_pred CCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010876 295 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 373 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 373 (498)
+...+ .......... ..........+|...+.+.+.+ ...+.++||||+++..++.++..|.+.++++..+|+.
T Consensus 364 ~vv~I--Ptnkp~~R~d-~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 364 EVVVV--PTNRPVIRKD-LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred CEEEe--CCCCCeeeee-CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 33322 1111111111 1122234556788777776654 3456699999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccccCCCCC-------CCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEecccc
Q 010876 374 QAERDWVLSEFKAGKSPIMTATDVAARGLDVKD-------VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 446 (498)
Q Consensus 374 ~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~-------v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 446 (498)
+.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|.|...|.|++||+||.|.+|.+..|++..|
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 889999999999999999999999999999998 5599999999999999999999999999999999999876
Q ss_pred H
Q 010876 447 A 447 (498)
Q Consensus 447 ~ 447 (498)
.
T Consensus 519 ~ 519 (745)
T TIGR00963 519 N 519 (745)
T ss_pred H
Confidence 4
No 73
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.6e-36 Score=307.75 Aligned_cols=322 Identities=19% Similarity=0.214 Sum_probs=225.3
Q ss_pred CCCcHHHHHHHHHhhc-C--CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 114 FEPTPIQAQGWPMALK-G--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~-~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
..|+|||.+++..+.. + +..++++|||+|||++++..+ ..+ +.++|||||+..|+.||.+++.++.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4799999999999874 3 368999999999999876543 332 2349999999999999999999986
Q ss_pred CCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc--------cCcccccccEEEeccchhhhcCCcHHHHH
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--------HNTNLRRVTYLVLDEADRMLDMGFEPQIK 262 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~--------~~~~l~~~~~vI~DE~h~~~~~~~~~~~~ 262 (498)
......+..++|+.... ......|+|+|++.+.....+ ..+.-..+++||+||||++.. ..+.
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 54445555555543221 122468999999987532211 112224688999999999864 4455
Q ss_pred HHHHhcCCCCcEEEEcCCCcHHHHH--HHHHHhcCCeEEEEcCCCccccccee--------------------------e
Q 010876 263 KILSQIRPDRQTLYWSATWPKEVEH--LARQYLYNPYKVIIGSPDLKANHAIR--------------------------Q 314 (498)
Q Consensus 263 ~i~~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~ 314 (498)
.++..+ .....++||||+..+-.. .+..+ ..|..+.....++....-+. .
T Consensus 394 ~il~~l-~a~~RLGLTATP~ReD~~~~~L~~L-iGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIV-QAHCKLGLTATLVREDDKITDLNFL-IGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhc-CcCcEEEEeecCcccCCchhhhhhh-cCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 566555 355679999998543211 11122 22222221111100000000 0
Q ss_pred eEeecchhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEE
Q 010876 315 HVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIM 392 (498)
Q Consensus 315 ~~~~~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g-~~~vL 392 (498)
.........|+..+..+++.. ..+.++||||++...++.+++.|. +..+||++++.+|..+++.|+++ .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 000112234555555566544 255699999999999999988873 45699999999999999999865 88999
Q ss_pred EEeccccccCCCCCCCEEEEcCCC-CChhHHHHhhcccccCCCcceE-------EEEeccc--cHHHHHHHHHHHHHhCC
Q 010876 393 TATDVAARGLDVKDVKYVINYDFP-GSLEDYVHRIGRTGRAGAKGTA-------YTFFTAA--NARFAKELITILEEAGQ 462 (498)
Q Consensus 393 vaT~~~~~Gldi~~v~~VI~~~~p-~s~~~~~Qr~GR~~R~g~~g~~-------~~~~~~~--~~~~~~~l~~~l~~~~~ 462 (498)
|+|+++.+|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ |.|++.+ +..+...-..+|-+.|-
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qGY 626 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQGY 626 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999988 4999999999999999877665 7888876 45566777778877654
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.1e-35 Score=291.56 Aligned_cols=291 Identities=18% Similarity=0.204 Sum_probs=201.3
Q ss_pred HHHHHHHHhhcCCc--EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC----
Q 010876 119 IQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS---- 192 (498)
Q Consensus 119 ~Q~~~i~~~l~~~~--~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~---- 192 (498)
+|.++++.+..+.+ +++++|||||||.+|++|++.. ..+++|++|+++|++|+++.+.++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 69999999998874 7889999999999999988842 234899999999999999998887532
Q ss_pred CCceEEEEeCCCCCc--hhH------------------HHHhcCCcEEEcChHHHHHHHhcc---C-----cccccccEE
Q 010876 193 SKIKSTCIYGGVPKG--PQV------------------RDLQKGVEIVIATPGRLIDMLESH---N-----TNLRRVTYL 244 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~--~~~------------------~~~~~~~~Ivi~T~~~l~~~l~~~---~-----~~l~~~~~v 244 (498)
.+..+..+.|..... ... ......+.|+++||+.|..++... . ..+.++++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 345555555542111 000 001235788999999997655321 1 125789999
Q ss_pred EeccchhhhcCC-----cHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHH--hcCCeEEEEcCC-----------Cc
Q 010876 245 VLDEADRMLDMG-----FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY--LYNPYKVIIGSP-----------DL 306 (498)
Q Consensus 245 I~DE~h~~~~~~-----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~-----------~~ 306 (498)
||||+|.+.... +......++.......+++++|||+++.+...+... +..+.....+.. ..
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 999999977533 122334444444446799999999999877777654 344443322220 00
Q ss_pred c------cccceeeeEeecchhhhHHHHHHHHHhh------cCCCeEEEEeCCcccHHHHHHHHhhCC--CCeEEecCCC
Q 010876 307 K------ANHAIRQHVDIVSESQKYNKLVKLLEDI------MDGSRILIFMDTKKGCDQITRQLRMDG--WPALSIHGDK 372 (498)
Q Consensus 307 ~------~~~~~~~~~~~~~~~~k~~~l~~~l~~~------~~~~~vlIf~~s~~~~~~l~~~L~~~~--~~~~~lh~~~ 372 (498)
. ....+.+.+.. ....+...+..+++.. ..++++||||++++.|+.++..|+..+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 0 00123333322 2223333333322222 245689999999999999999998764 5788999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccc
Q 010876 373 SQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTG 430 (498)
Q Consensus 373 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~ 430 (498)
++.+|..+ ++.+|||||+++++|||++.+ +|| ++ |.+.+.|+||+||+|
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99988654 378999999999999999986 566 45 889999999999997
No 75
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=314.96 Aligned_cols=334 Identities=23% Similarity=0.337 Sum_probs=257.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 010876 100 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 179 (498)
Q Consensus 100 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La 179 (498)
....+..++.+.++..|++||.+|+..+.+|+++|++.+||||||.+|++|++.++..++ ..++|+|.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhH
Confidence 344567888889999999999999999999999999999999999999999999999854 33789999999999
Q ss_pred HHHHHHHHHhcCCCC--ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc----CcccccccEEEeccchhhh
Q 010876 180 VQIQQESTKFGASSK--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLDEADRML 253 (498)
Q Consensus 180 ~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~----~~~l~~~~~vI~DE~h~~~ 253 (498)
+.+.+.++++....+ +......|+...........+.++|+++||++|..++.+. .+.++++++||+||+|..-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999987776 6667777777665555667888999999999998755543 2346779999999999754
Q ss_pred cCCcHHHHHHH-------HHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecc------
Q 010876 254 DMGFEPQIKKI-------LSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS------ 320 (498)
Q Consensus 254 ~~~~~~~~~~i-------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 320 (498)
.. |+..+..+ +......+|+|+.|||+.+ ..+++..+........+.... . .......+...+
T Consensus 209 Gv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~~v~~~g-~-~~~~~~~~~~~p~~~~~~ 284 (851)
T COG1205 209 GV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLAN-PGEFAEELFGRDFEVPVDEDG-S-PRGLRYFVRREPPIRELA 284 (851)
T ss_pred cc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccC-hHHHHHHhcCCcceeeccCCC-C-CCCceEEEEeCCcchhhh
Confidence 32 34333333 3333468999999999976 556666666666555332221 1 111111111111
Q ss_pred ---hhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHH----HHHhhCC----CCeEEecCCCCHHHHHHHHHHHhcCC
Q 010876 321 ---ESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQIT----RQLRMDG----WPALSIHGDKSQAERDWVLSEFKAGK 388 (498)
Q Consensus 321 ---~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~----~~L~~~~----~~~~~lh~~~~~~~r~~~~~~f~~g~ 388 (498)
...+...+..++... ..+-++|+|+.++..++.+. ..+...+ ..+..+++++...+|..++..|+.|+
T Consensus 285 ~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 285 ESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred hhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC
Confidence 113333333443332 34569999999999999997 4444444 56889999999999999999999999
Q ss_pred CcEEEEeccccccCCCCCCCEEEEcCCCC-ChhHHHHhhcccccCCCcceEEEEec
Q 010876 389 SPIMTATDVAARGLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFT 443 (498)
Q Consensus 389 ~~vLvaT~~~~~Gldi~~v~~VI~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~ 443 (498)
..++++|++++-|+||.+++.||.+..|. +..+++||.||+||.++.+..++...
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999999999999999999999 89999999999999987776666555
No 76
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.8e-36 Score=315.06 Aligned_cols=330 Identities=23% Similarity=0.318 Sum_probs=262.4
Q ss_pred HHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 010876 109 SKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 188 (498)
Q Consensus 109 ~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~ 188 (498)
...|...+++-|.++|..++.|+++++.+|||.||++||.+|++.. ++..|||.|..+|.+.+...+.
T Consensus 258 ~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L~- 325 (941)
T KOG0351|consen 258 EVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHLS- 325 (941)
T ss_pred HHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhhh-
Confidence 4578899999999999999999999999999999999999998754 4579999999999765555443
Q ss_pred hcCCCCceEEEEeCCCCCchhH---HHHhc---CCcEEEcChHHHHHH--HhccCccccc---ccEEEeccchhhhcCC-
Q 010876 189 FGASSKIKSTCIYGGVPKGPQV---RDLQK---GVEIVIATPGRLIDM--LESHNTNLRR---VTYLVLDEADRMLDMG- 256 (498)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~Ivi~T~~~l~~~--l~~~~~~l~~---~~~vI~DE~h~~~~~~- 256 (498)
..++....+.++....++. ..+.. ..+|+..|||++... +......+.. +.++|+||||++..|+
T Consensus 326 ---~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgH 402 (941)
T KOG0351|consen 326 ---KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGH 402 (941)
T ss_pred ---hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcc
Confidence 3457778888877664332 23333 478999999997542 2222223444 7899999999999987
Q ss_pred -cHHHHHHHHHhc--CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHH
Q 010876 257 -FEPQIKKILSQI--RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLE 333 (498)
Q Consensus 257 -~~~~~~~i~~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 333 (498)
|++.++++.... .+...++.+|||....+.+.+-..+.-.....+... ....++...+...........+...++
T Consensus 403 dFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s--fnR~NL~yeV~~k~~~~~~~~~~~~~~ 480 (941)
T KOG0351|consen 403 DFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS--FNRPNLKYEVSPKTDKDALLDILEESK 480 (941)
T ss_pred cccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc--CCCCCceEEEEeccCccchHHHHHHhh
Confidence 888877764322 245789999999988887766665543333233222 223344444443333455556666677
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEc
Q 010876 334 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 413 (498)
Q Consensus 334 ~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~ 413 (498)
...+....||||.++.+|+.++..|+..++.+..||++|+..+|+.+...|..++++|+|||=++++|||-|+|+.||||
T Consensus 481 ~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~ 560 (941)
T KOG0351|consen 481 LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHY 560 (941)
T ss_pred hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEEC
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHH
Q 010876 414 DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 455 (498)
Q Consensus 414 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 455 (498)
.+|.|.+.|.|-+|||||.|....|++|+...|...+..++.
T Consensus 561 ~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 561 SLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred CCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 999999999999999999999999999999987666555554
No 77
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.3e-34 Score=312.30 Aligned_cols=302 Identities=23% Similarity=0.329 Sum_probs=215.9
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCc----HHHHHHHHHHHHH-hcC
Q 010876 117 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT----RELAVQIQQESTK-FGA 191 (498)
Q Consensus 117 ~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~----~~La~q~~~~~~~-~~~ 191 (498)
+.+..+.+..+..++.++++|+||||||+ .+|.+..... .+....+++..|. ++||.++++++.. ++.
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g-----~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG-----RGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC-----CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 34455666677777889999999999999 4674433221 1112346666785 5888888888874 554
Q ss_pred CCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccch-hhhcCCcHHH-HHHHHHhcC
Q 010876 192 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIR 269 (498)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h-~~~~~~~~~~-~~~i~~~~~ 269 (498)
..++.+. ... ....++.|+|+||++|++.+..+. .++++++||||||| ++++.+|... +..++.. +
T Consensus 149 ~VGY~vr-------f~~---~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-r 216 (1294)
T PRK11131 149 CVGYKVR-------FND---QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-R 216 (1294)
T ss_pred eeceeec-------Ccc---ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-C
Confidence 4443321 111 123468999999999999988654 48999999999999 6888887653 4444433 3
Q ss_pred CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecch------hhhHHHHHHHHHhh--cCCCeE
Q 010876 270 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE------SQKYNKLVKLLEDI--MDGSRI 341 (498)
Q Consensus 270 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~~~--~~~~~v 341 (498)
++.|+|+||||++. +.+.+.|...|. +.+.... ..+...+..... .+....++..+..+ ...+.+
T Consensus 217 pdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdI 289 (1294)
T PRK11131 217 PDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDI 289 (1294)
T ss_pred CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCE
Confidence 67899999999975 456666655554 3332211 123333322211 22333444433332 234689
Q ss_pred EEEeCCcccHHHHHHHHhhCCCC---eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCC---
Q 010876 342 LIFMDTKKGCDQITRQLRMDGWP---ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF--- 415 (498)
Q Consensus 342 lIf~~s~~~~~~l~~~L~~~~~~---~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~--- 415 (498)
||||+++.+++.+++.|+..+++ +..+||++++++|..+++. .|..+|||||+++++|||||++++||+++.
T Consensus 290 LVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~ 367 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARI 367 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccc
Confidence 99999999999999999987665 6789999999999999886 578999999999999999999999999863
Q ss_pred ------------C---CChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 416 ------------P---GSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 416 ------------p---~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
| .|.++|.||+||+||. ++|.||.++++.+.
T Consensus 368 ~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 368 SRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred cccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 3 4668999999999999 79999999997653
No 78
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-35 Score=273.92 Aligned_cols=332 Identities=22% Similarity=0.354 Sum_probs=242.2
Q ss_pred HHHHHHH-CCCCC-CcHHHHHHHHHhhcC-CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 010876 104 VMQEISK-AGFFE-PTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 180 (498)
Q Consensus 104 ~~~~l~~-~~~~~-~~~~Q~~~i~~~l~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~ 180 (498)
+.+.|++ .|+.. -++.|++|+..+..+ +|+.+++|||+||+++|.+|+|.+ +...||++|..+|..
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHH
Confidence 4445554 35443 478999999998865 589999999999999999999876 447999999999998
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCCCchh---HHHH---hcCCcEEEcChHHHH-----HHHhccCcccccccEEEeccc
Q 010876 181 QIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDL---QKGVEIVIATPGRLI-----DMLESHNTNLRRVTYLVLDEA 249 (498)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~Ivi~T~~~l~-----~~l~~~~~~l~~~~~vI~DE~ 249 (498)
.+.+.+.++. +.+..+.+..+..+. +.++ .....++..||+... ++|+ ...+-..+.|+|+|||
T Consensus 76 DQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 76 DQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechh
Confidence 8888887764 333333333332222 2223 234679999998742 2332 2222345789999999
Q ss_pred hhhhcCC--cHHHHHHH--HHhcCCCCcEEEEcCCCcHHHHHHHHHH--hcCCeEEEEcCCCcccccceeeeEe-ecchh
Q 010876 250 DRMLDMG--FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQY--LYNPYKVIIGSPDLKANHAIRQHVD-IVSES 322 (498)
Q Consensus 250 h~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 322 (498)
|++..|+ |++.+..+ ++..-++...+.+|||.+..+++.+-.- +.+|+.+.-... .. .++...+. ...-+
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~-FR--~NLFYD~~~K~~I~ 227 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT-FR--DNLFYDNHMKSFIT 227 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc-hh--hhhhHHHHHHHHhh
Confidence 9999987 77766554 2223367889999999998887655433 345554432111 11 11110000 00112
Q ss_pred hhHHHHHHHHHhhc------------CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCc
Q 010876 323 QKYNKLVKLLEDIM------------DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 390 (498)
Q Consensus 323 ~k~~~l~~~l~~~~------------~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~ 390 (498)
+.+..|.++..... ..+..||||.|+++|+.++-.|...|+++..+|.++...+|.++.+.|.+++..
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 33444444432211 123589999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHH
Q 010876 391 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 454 (498)
Q Consensus 391 vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 454 (498)
|++||..+++|+|-|+|++|||++.|.|..-|.|-.||+||.|....|-+++..+|...+.-|+
T Consensus 308 vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988875554443
No 79
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=3.3e-34 Score=262.75 Aligned_cols=335 Identities=21% Similarity=0.331 Sum_probs=261.7
Q ss_pred ccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 96 RDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 96 ~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
++++.+....+.|+. ....+++|.|..+|+..+.+.+++++.|||.||+++|.+|++.. ...+||+||
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~p 142 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICP 142 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeech
Confidence 356777788877764 46778999999999999999999999999999999999999854 445899999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH---H---HhcCCcEEEcChHHHHH---HHhc--cCcccccccE
Q 010876 175 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---D---LQKGVEIVIATPGRLID---MLES--HNTNLRRVTY 243 (498)
Q Consensus 175 ~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~Ivi~T~~~l~~---~l~~--~~~~l~~~~~ 243 (498)
..+|.+...-+++.++ +....+....+.....+ . ......++..||+++.. ++.+ .......+++
T Consensus 143 lislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 143 LISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred hHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 9999988888888876 33334444333322211 1 12346799999998743 1211 1234567889
Q ss_pred EEeccchhhhcCC--cHHHHHH--HHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEee-
Q 010876 244 LVLDEADRMLDMG--FEPQIKK--ILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI- 318 (498)
Q Consensus 244 vI~DE~h~~~~~~--~~~~~~~--i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 318 (498)
+.+||+|+...|+ |++.+.. +++..-+...+++++||..+.+...++..+.-...+.+.... ...++...+..
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~f--nr~nl~yev~qk 296 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGF--NRPNLKYEVRQK 296 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeeccc--CCCCceeEeeeC
Confidence 9999999999886 6665553 455555788999999999988887777766543333332221 12223322222
Q ss_pred -cchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 010876 319 -VSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 397 (498)
Q Consensus 319 -~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 397 (498)
...++-...+..+++....+...||||-+.+.|+.++..|+..|+.+..+|..|.+++|.-+.+.|..|++.|+|||-.
T Consensus 297 p~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatva 376 (695)
T KOG0353|consen 297 PGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVA 376 (695)
T ss_pred CCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEee
Confidence 2345567777778877777788999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCEEEEcCCCCChhHHHH-------------------------------------------hhcccccCCC
Q 010876 398 AARGLDVKDVKYVINYDFPGSLEDYVH-------------------------------------------RIGRTGRAGA 434 (498)
Q Consensus 398 ~~~Gldi~~v~~VI~~~~p~s~~~~~Q-------------------------------------------r~GR~~R~g~ 434 (498)
+++|||-|+|++|||..+|.|++.|.| -.||+||.+.
T Consensus 377 fgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~ 456 (695)
T KOG0353|consen 377 FGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDM 456 (695)
T ss_pred ecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCC
Confidence 999999999999999999999999999 5699999999
Q ss_pred cceEEEEeccccH
Q 010876 435 KGTAYTFFTAANA 447 (498)
Q Consensus 435 ~g~~~~~~~~~~~ 447 (498)
+..|++++--.|.
T Consensus 457 ~a~cilyy~~~di 469 (695)
T KOG0353|consen 457 KADCILYYGFADI 469 (695)
T ss_pred cccEEEEechHHH
Confidence 9999999875543
No 80
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.5e-34 Score=294.76 Aligned_cols=347 Identities=19% Similarity=0.272 Sum_probs=256.8
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCC-cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCC---CCCEEEEEcC
Q 010876 99 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG---DGPIVLVLAP 174 (498)
Q Consensus 99 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~-~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~---~~~~vlvl~P 174 (498)
.+|.+-..++. +...++++|....+.++.+. ++++|||||+|||.++++.+++.+..+.....+ ...+++|++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 57777777774 44569999999999998765 799999999999999999999999876542211 2457999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccC---cccccccEEEeccchh
Q 010876 175 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN---TNLRRVTYLVLDEADR 251 (498)
Q Consensus 175 ~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~---~~l~~~~~vI~DE~h~ 251 (498)
.++|++.|...|.+.....++.|...+|+.....+. ..+..|+|+|||++ |.+.++. ...+-++++|+||+|.
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhh
Confidence 999999999999998889999999999987654332 23578999999998 5555542 2345678999999998
Q ss_pred hhcCCcHHHHHHHHHhc-------CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhh-
Q 010876 252 MLDMGFEPQIKKILSQI-------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQ- 323 (498)
Q Consensus 252 ~~~~~~~~~~~~i~~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 323 (498)
+.+. .++.++.|+.+. ....+++++|||+|+ .++....+..++..++.-... ..+..+.|.+.-+....
T Consensus 449 LhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~fd~s-yRpvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 449 LHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFYFDSS-YRPVPLKQQYIGITEKKP 525 (1674)
T ss_pred cccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCc-hhhhHHHhccCcccccccCcc-cCcCCccceEeccccCCc
Confidence 7665 488888776554 246789999999997 556666555555333222222 33444555444333221
Q ss_pred --hHH----HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC------------------------------------
Q 010876 324 --KYN----KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------------------------ 361 (498)
Q Consensus 324 --k~~----~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~------------------------------------ 361 (498)
+.+ ...+-+-+....++||||+.+++++.+.|+.++..
T Consensus 526 ~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdL 605 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDL 605 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHH
Confidence 111 22333333344579999999999988887777521
Q ss_pred -CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEE----EcCC------CCChhHHHHhhcccc
Q 010876 362 -GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----NYDF------PGSLEDYVHRIGRTG 430 (498)
Q Consensus 362 -~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI----~~~~------p~s~~~~~Qr~GR~~ 430 (498)
.+....+|++|+..+|..+++.|.+|+++|||+|.++++|+|+|...++| .||+ +.++.+.+||+||+|
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 14567899999999999999999999999999999999999999988877 3443 348999999999999
Q ss_pred cCCCc--ceEEEEeccccHHHHHHHH
Q 010876 431 RAGAK--GTAYTFFTAANARFAKELI 454 (498)
Q Consensus 431 R~g~~--g~~~~~~~~~~~~~~~~l~ 454 (498)
|.+-+ |..++....++..+...++
T Consensus 686 rp~~D~~gegiiit~~se~qyyls~m 711 (1674)
T KOG0951|consen 686 RPQYDTCGEGIIITDHSELQYYLSLM 711 (1674)
T ss_pred CCccCcCCceeeccCchHhhhhHHhh
Confidence 98654 6666666655554444433
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=4.5e-32 Score=270.06 Aligned_cols=345 Identities=21% Similarity=0.268 Sum_probs=258.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010876 100 FPDYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 173 (498)
Q Consensus 100 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~ 173 (498)
....+++.+...=-++||..|++++..|... .+-+++++.|||||++++++++..+.. |.++...+
T Consensus 247 ~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMA 318 (677)
T COG1200 247 ANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMA 318 (677)
T ss_pred ccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEec
Confidence 3444555554333349999999999998753 247999999999999999988887765 78899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh---HHHHhcC-CcEEEcChHHHHHHHhccCcccccccEEEeccc
Q 010876 174 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 249 (498)
Q Consensus 174 P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~ 249 (498)
||.-||.|.++.+.++....++++..++|....... ...+.++ .+|||+| +.|..+...++++.++|+||=
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEecc
Confidence 999999999999999999999999999998765443 3334444 8999999 444556777999999999999
Q ss_pred hhhhcCCcHHHHHHHHHhcCC-CCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHH
Q 010876 250 DRMLDMGFEPQIKKILSQIRP-DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 328 (498)
Q Consensus 250 h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 328 (498)
|+ |+-.-+..+..-.. .+++++||||+-+....+.. +.+-..-.+.... .-...+.-. ++..+.+...+
T Consensus 394 HR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~--fgDldvS~IdElP-~GRkpI~T~--~i~~~~~~~v~ 463 (677)
T COG1200 394 HR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTA--FGDLDVSIIDELP-PGRKPITTV--VIPHERRPEVY 463 (677)
T ss_pred cc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHH--hccccchhhccCC-CCCCceEEE--EeccccHHHHH
Confidence 99 55555555555555 78999999998655544433 2222221222211 111222222 22333333333
Q ss_pred HHHHHhhcCCCeEEEEeCCccc--------HHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 010876 329 VKLLEDIMDGSRILIFMDTKKG--------CDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 398 (498)
Q Consensus 329 ~~~l~~~~~~~~vlIf~~s~~~--------~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 398 (498)
..+-+++..+.++.|.|+-+++ |..++..|+.. ++++..+||.|+.++++.++..|++|+++|||||.++
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE
Confidence 3444556678899999988765 45666777643 5678999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEcCCC-CChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhC--CCCCHH
Q 010876 399 ARGLDVKDVKYVINYDFP-GSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG--QKVSPE 467 (498)
Q Consensus 399 ~~Gldi~~v~~VI~~~~p-~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~ 467 (498)
+.|||+|+++++|+.+.- .-.++.-|-.||+||.+..+.|+.++.+...+..+.-++++++.. ..|.+.
T Consensus 544 EVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~ 615 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEE 615 (677)
T ss_pred EecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhh
Confidence 999999999999988864 357899999999999999999999999887677888888888764 344443
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.1e-32 Score=293.76 Aligned_cols=334 Identities=17% Similarity=0.153 Sum_probs=220.2
Q ss_pred CCcHHHHHHHHHhhcC--CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 115 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
.|.|||.+++..++.. ..+++..++|.|||..+.+.+...+.. +...++|||||. .|..||..++.+...
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF~- 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRFN- 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHhC-
Confidence 5999999998887654 369999999999999887644443333 234569999997 899999999864321
Q ss_pred CCceEEEEeCCCCCchhHH---HHhcCCcEEEcChHHHHHHHh-ccCcccccccEEEeccchhhhcCC--cHHHHHHHHH
Q 010876 193 SKIKSTCIYGGVPKGPQVR---DLQKGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKILS 266 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~---~~~~~~~Ivi~T~~~l~~~l~-~~~~~l~~~~~vI~DE~h~~~~~~--~~~~~~~i~~ 266 (498)
+.... +++........ ......+++|+|++.+...-. .....-..+++||+||||++.... -...+..+..
T Consensus 224 --l~~~i-~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 224 --LRFSL-FDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred --CCeEE-EcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 23322 22221110000 111235899999988764111 011122468999999999987321 1122333322
Q ss_pred hcCCCCcEEEEcCCCcH-HHH------------------HHH-------------H-----------------HHhcCCe
Q 010876 267 QIRPDRQTLYWSATWPK-EVE------------------HLA-------------R-----------------QYLYNPY 297 (498)
Q Consensus 267 ~~~~~~~~i~~SAT~~~-~~~------------------~~~-------------~-----------------~~~~~~~ 297 (498)
.......++++|||+-. ... .+. . .++.+..
T Consensus 301 La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 301 LAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred HhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 22345689999999631 000 000 0 0000000
Q ss_pred ---------------------------------EEEEcCCC--cc-cccceeeeEe------------------------
Q 010876 298 ---------------------------------KVIIGSPD--LK-ANHAIRQHVD------------------------ 317 (498)
Q Consensus 298 ---------------------------------~~~~~~~~--~~-~~~~~~~~~~------------------------ 317 (498)
.+.+.... .. ......+.+.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 00000000 00 0000000000
Q ss_pred -------------ecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHh-hCCCCeEEecCCCCHHHHHHHHHH
Q 010876 318 -------------IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR-MDGWPALSIHGDKSQAERDWVLSE 383 (498)
Q Consensus 318 -------------~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~-~~~~~~~~lh~~~~~~~r~~~~~~ 383 (498)
......|...|.++++... ..|+||||+++..++.+++.|+ ..|+++..+||+|++.+|+.+++.
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~-~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~ 539 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSHR-SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAY 539 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhcC-CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHH
Confidence 0011235556667666543 5699999999999999999994 679999999999999999999999
Q ss_pred HhcC--CCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHh
Q 010876 384 FKAG--KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 460 (498)
Q Consensus 384 f~~g--~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 460 (498)
|+++ ..+|||||+++++|+|++.+++||+||+|+++..|.||+||++|.|+++.+.+++........+.+.+.+.+.
T Consensus 540 F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~ 618 (956)
T PRK04914 540 FADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEG 618 (956)
T ss_pred HhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhh
Confidence 9974 6999999999999999999999999999999999999999999999999888887766655666666666654
No 83
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-32 Score=275.22 Aligned_cols=294 Identities=23% Similarity=0.292 Sum_probs=203.5
Q ss_pred CCCcHHHHHHHHHhhc----CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 114 FEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~----~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
.+|+++|++|+..+.. .+..++++|||+|||.+++..+ ..+.. .+|||||+++|+.||++.+.++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~-~~~~~----------~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAI-AELKR----------STLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHH-HHhcC----------CEEEEECcHHHHHHHHHHHHHh
Confidence 4799999999999988 7889999999999999876643 33322 2999999999999999888876
Q ss_pred cCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcC
Q 010876 190 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 269 (498)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~ 269 (498)
.... .....+++..... .. ..|+|+|.+.+.............+++||+||||++.+..+. .+...+.
T Consensus 104 ~~~~--~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~~ 171 (442)
T COG1061 104 LLLN--DEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELLS 171 (442)
T ss_pred cCCc--cccceecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhhh
Confidence 5432 1223333332211 11 369999999987752112222347899999999998866543 3333332
Q ss_pred CCCcEEEEcCCCcHHHHHHHHHH--hcCCeEEEEcCCCcc-----cccceeeeEe-------------------------
Q 010876 270 PDRQTLYWSATWPKEVEHLARQY--LYNPYKVIIGSPDLK-----ANHAIRQHVD------------------------- 317 (498)
Q Consensus 270 ~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~------------------------- 317 (498)
....+++||||++.........+ ...+..+.....++. .+..+.....
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~ 251 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG 251 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh
Confidence 22228999999764321111111 111222221111100 0000000000
Q ss_pred -----------ecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhc
Q 010876 318 -----------IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 386 (498)
Q Consensus 318 -----------~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~ 386 (498)
......+...+..++.....+.+++|||.++.+++.++..+...++ +..+.+..+..+|..+++.|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 252 TLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc
Confidence 0011122333333333332356999999999999999999998888 8899999999999999999999
Q ss_pred CCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhccccc
Q 010876 387 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR 431 (498)
Q Consensus 387 g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R 431 (498)
|.+++||++.++.+|+|+|+++++|...+..|...|+||+||..|
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999
No 84
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=2e-31 Score=282.28 Aligned_cols=353 Identities=20% Similarity=0.241 Sum_probs=227.0
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 113 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 113 ~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
..+|+|+|..+........-+|+.||||+|||.+++.++...+.. +...+++|..||+++++|+++.+.++...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ------GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 348999999886554445568999999999999987765543332 22467999999999999999998763321
Q ss_pred --CCceEEEEeCCCCCchhHH--------------------HH-h---c---CCcEEEcChHHHHHHH-hccCcccccc-
Q 010876 193 --SKIKSTCIYGGVPKGPQVR--------------------DL-Q---K---GVEIVIATPGRLIDML-ESHNTNLRRV- 241 (498)
Q Consensus 193 --~~~~~~~~~~~~~~~~~~~--------------------~~-~---~---~~~Ivi~T~~~l~~~l-~~~~~~l~~~- 241 (498)
....+...+|......... .. . + -.+|+|+|.++++..+ ......+..+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 1245666666543211100 00 0 1 1589999999976543 3222233333
Q ss_pred ---cEEEeccchhhhcCCcHHHHHHHHHhc-CCCCcEEEEcCCCcHHHHHHH-HHHhcC-C------eE-EE-EcCC---
Q 010876 242 ---TYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLA-RQYLYN-P------YK-VI-IGSP--- 304 (498)
Q Consensus 242 ---~~vI~DE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~-~~~~~~-~------~~-~~-~~~~--- 304 (498)
++|||||+|.+-. .....+..+++.+ .....+|+||||+|....+.+ +.+-.. + +. +. ....
T Consensus 438 La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 4899999998633 2344555555443 245679999999998776543 333211 0 00 00 0000
Q ss_pred C--cccc---cceeeeEee--c--ch-hhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCC---CCeEEecCC
Q 010876 305 D--LKAN---HAIRQHVDI--V--SE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG---WPALSIHGD 371 (498)
Q Consensus 305 ~--~~~~---~~~~~~~~~--~--~~-~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~---~~~~~lh~~ 371 (498)
. .... ......+.+ . .. ......+..+++....++++||||||++.|..+++.|++.+ .++..+|+.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 0 0000 001111111 1 11 11223333444445567799999999999999999998764 579999999
Q ss_pred CCHHHH----HHHHHHH-hcCC---CcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCc----c---
Q 010876 372 KSQAER----DWVLSEF-KAGK---SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK----G--- 436 (498)
Q Consensus 372 ~~~~~r----~~~~~~f-~~g~---~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~----g--- 436 (498)
++..+| +++++.| ++++ ..|||||+++++|||| ++++||....| .+.++||+||++|.+.. |
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~~rp~~~~~ 673 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRKYRPAGFEI 673 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCCCCCCCCcC
Confidence 999999 4567788 6666 4799999999999999 68999998888 78999999999998763 2
Q ss_pred -eEEEEecc-----------ccHHHHHHHHHHHHHhC---CCCCHHHHhhhcCC
Q 010876 437 -TAYTFFTA-----------ANARFAKELITILEEAG---QKVSPELAAMGRGA 475 (498)
Q Consensus 437 -~~~~~~~~-----------~~~~~~~~l~~~l~~~~---~~~~~~l~~~~~~~ 475 (498)
.++++... .+...+..-..+|++.+ ..+|+....+.+..
T Consensus 674 p~~~V~~p~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~~~~lve~v 727 (878)
T PRK09694 674 PVATVLLPDGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDAYREWIESV 727 (878)
T ss_pred ceEEEEeccccccCCceeecCchHHHHHHHHHHHhcCCCCcCChHHHHHHHHHH
Confidence 33443221 12234455557777775 56888887776544
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=6.9e-31 Score=276.48 Aligned_cols=317 Identities=19% Similarity=0.202 Sum_probs=219.4
Q ss_pred CCCcHHHHHHHHHhhcC---CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 114 FEPTPIQAQGWPMALKG---RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~---~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
..|++.|.++++.+..+ +++++.++||||||.+|+.++...+.. +.++||++|+++|+.|+.+.+++..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36999999999999874 689999999999999998876665543 6689999999999999999998753
Q ss_pred CCCCceEEEEeCCCCCchhHHH---H-hcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-----c-HHH
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----F-EPQ 260 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-----~-~~~ 260 (498)
+..+..++++.+..+.... + ....+|+|+|++.+. ..+.++++||+||+|...... + ...
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 3578888888776544322 2 345799999998763 347889999999999765332 1 111
Q ss_pred HHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchh------hhHHHHHHHHHh
Q 010876 261 IKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES------QKYNKLVKLLED 334 (498)
Q Consensus 261 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l~~ 334 (498)
+ .++.....+.+++++|||++.+....+.. .....+................+...... .--..+.+.+++
T Consensus 285 v-a~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 285 L-AVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred H-HHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHH
Confidence 2 22333456889999999987655544332 11111111111000001111111110000 011234444443
Q ss_pred -hcCCCeEEEEeCCcc------------------------------------------------------------cHHH
Q 010876 335 -IMDGSRILIFMDTKK------------------------------------------------------------GCDQ 353 (498)
Q Consensus 335 -~~~~~~vlIf~~s~~------------------------------------------------------------~~~~ 353 (498)
+..+.++|||+|.+. .++.
T Consensus 362 ~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~ 441 (679)
T PRK05580 362 RLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTER 441 (679)
T ss_pred HHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHH
Confidence 334568999988632 3467
Q ss_pred HHHHHhhC--CCCeEEecCCCC--HHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCC--CC---------
Q 010876 354 ITRQLRMD--GWPALSIHGDKS--QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP--GS--------- 418 (498)
Q Consensus 354 l~~~L~~~--~~~~~~lh~~~~--~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p--~s--------- 418 (498)
+++.|++. +.++..+|+++. ..+++.+++.|++|+.+|||+|+++++|+|+|++++|+.++.+ .+
T Consensus 442 ~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er 521 (679)
T PRK05580 442 LEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASER 521 (679)
T ss_pred HHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHH
Confidence 77888764 778999999986 4678999999999999999999999999999999999655543 22
Q ss_pred -hhHHHHhhcccccCCCcceEEEEeccccHHHHH
Q 010876 419 -LEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 451 (498)
Q Consensus 419 -~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~ 451 (498)
...|+|++||+||.+..|.+++.....+...+.
T Consensus 522 ~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 522 TFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred HHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHH
Confidence 367999999999999999999876655443333
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.3e-31 Score=290.20 Aligned_cols=302 Identities=23% Similarity=0.296 Sum_probs=212.5
Q ss_pred HHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh-cCCCCceEEE
Q 010876 121 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF-GASSKIKSTC 199 (498)
Q Consensus 121 ~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~-~~~~~~~~~~ 199 (498)
.+.+..+..++.+|++|+||||||+. +|.+..-.. .+...++++..|.|--|..+++.+.+. +...+-.|..
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~-----~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY 145 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG-----RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGY 145 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC-----CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEee
Confidence 45566666777899999999999994 564433221 112346788889987777777666643 3333322221
Q ss_pred EeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccch-hhhcCCcHHH-HHHHHHhcCCCCcEEEE
Q 010876 200 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIRPDRQTLYW 277 (498)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h-~~~~~~~~~~-~~~i~~~~~~~~~~i~~ 277 (498)
-.. ...+ ......|+++|++.|++.+..+. .+.++++|||||+| +.++.+|... ++.++.. +++.++|+|
T Consensus 146 ~vR---~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlm 217 (1283)
T TIGR01967 146 KVR---FHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIIT 217 (1283)
T ss_pred EEc---CCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEE
Confidence 111 1111 23457899999999999887654 48999999999999 6888887654 5555443 468999999
Q ss_pred cCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecc------hhhhHHHHHHHHHhhc--CCCeEEEEeCCcc
Q 010876 278 SATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS------ESQKYNKLVKLLEDIM--DGSRILIFMDTKK 349 (498)
Q Consensus 278 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~k~~~l~~~l~~~~--~~~~vlIf~~s~~ 349 (498)
|||++. ..+.+.|...|. +.+.... ..+...+.... ..++...+...+..+. ..+.+|||+++..
T Consensus 218 SATld~--~~fa~~F~~apv-I~V~Gr~----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~ 290 (1283)
T TIGR01967 218 SATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGER 290 (1283)
T ss_pred eCCcCH--HHHHHHhcCCCE-EEECCCc----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHH
Confidence 999964 566666655554 3332211 11222222111 1134444555444432 3468999999999
Q ss_pred cHHHHHHHHhhCC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCC----------
Q 010876 350 GCDQITRQLRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP---------- 416 (498)
Q Consensus 350 ~~~~l~~~L~~~~---~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p---------- 416 (498)
+++.+++.|++.+ +.+..+||++++++|..+++.+ +..+|||||+++++|||||++++||+++.+
T Consensus 291 EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~ 368 (1283)
T TIGR01967 291 EIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTK 368 (1283)
T ss_pred HHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccC
Confidence 9999999998764 4578899999999999986654 347899999999999999999999999853
Q ss_pred --------CChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 417 --------GSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 417 --------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
.|.++|.||.||+||.+ +|.||.++++.+.
T Consensus 369 ~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 369 VQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred ccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 36789999999999996 9999999997654
No 87
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.9e-32 Score=274.30 Aligned_cols=309 Identities=18% Similarity=0.198 Sum_probs=230.5
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
++|-.+|++||-++..|.++++.|+|.+|||+++..++...-. .+.+++|.+|-++|.+|.++.|+.-....
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~--------h~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK--------HMTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh--------hccceEecchhhhhccchHHHHHHhcccc
Confidence 4889999999999999999999999999999998776543322 36789999999999999999999655443
Q ss_pred CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCc
Q 010876 194 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 273 (498)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~ 273 (498)
+ .++|+... ...+.++|+|.+.|.+++.++..-++++.+|||||+|.+.+...+..+++++-.++.+.+
T Consensus 368 g----LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~ 436 (1248)
T KOG0947|consen 368 G----LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVN 436 (1248)
T ss_pred c----eeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccce
Confidence 3 67777643 456789999999999999998888899999999999999999999999999999999999
Q ss_pred EEEEcCCCcHHHHHHHHHHhc-CCeEEEEcCCCcccccceeeeEeec---------------------------------
Q 010876 274 TLYWSATWPKEVEHLARQYLY-NPYKVIIGSPDLKANHAIRQHVDIV--------------------------------- 319 (498)
Q Consensus 274 ~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 319 (498)
+|++|||.|+..+ ++..... +...+.+.+.. ..+..+.+++...
T Consensus 437 ~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~-kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~ 514 (1248)
T KOG0947|consen 437 FILLSATVPNTLE-FADWIGRTKQKTIYVISTS-KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVD 514 (1248)
T ss_pred EEEEeccCCChHH-HHHHhhhccCceEEEEecC-CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccc
Confidence 9999999998543 4333211 11111111100 0000000000000
Q ss_pred ------------------------------chhhhH--HHHHHHHHhhcCC--CeEEEEeCCcccHHHHHHHHhhCCC--
Q 010876 320 ------------------------------SESQKY--NKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQLRMDGW-- 363 (498)
Q Consensus 320 ------------------------------~~~~k~--~~l~~~l~~~~~~--~~vlIf~~s~~~~~~l~~~L~~~~~-- 363 (498)
....+. ....+++..+... -|++|||-+++.|++.+++|....+
T Consensus 515 ~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~ 594 (1248)
T KOG0947|consen 515 VEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTD 594 (1248)
T ss_pred cccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCccc
Confidence 000111 1244444443322 3899999999999999999965321
Q ss_pred -------------------------------------CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 010876 364 -------------------------------------PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 406 (498)
Q Consensus 364 -------------------------------------~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 406 (498)
.+.++||++-+--++.++..|..|-++||+||.++++|||+|.
T Consensus 595 ~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA 674 (1248)
T KOG0947|consen 595 SKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA 674 (1248)
T ss_pred chhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc
Confidence 2347899999999999999999999999999999999999998
Q ss_pred CCEEEEcC--------CCCChhHHHHhhcccccCCCc--ceEEEEec
Q 010876 407 VKYVINYD--------FPGSLEDYVHRIGRTGRAGAK--GTAYTFFT 443 (498)
Q Consensus 407 v~~VI~~~--------~p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~ 443 (498)
-.+|+.-- .--.+.+|.||.|||||.|-+ |.++++..
T Consensus 675 RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 675 RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 77776321 122689999999999999876 66555544
No 88
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=8e-31 Score=238.81 Aligned_cols=202 Identities=52% Similarity=0.868 Sum_probs=183.6
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 95 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 95 f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
|+++++++.+.+.+...++..|+++|.++++.+++++++++++|||+|||++|++|++.++.... ...+++++|++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999988742 124788999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhc
Q 010876 175 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 254 (498)
Q Consensus 175 ~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~ 254 (498)
+++|+.|+.+.+..+....++.+..++|+.........+..+++|+|+||+++.+++.+....+.+++++|+||+|.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988788999999998877666666666889999999999999988878889999999999999998
Q ss_pred CCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEE
Q 010876 255 MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV 299 (498)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 299 (498)
.++...+..++..++...+++++|||+++.+..++..++.+++.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 889999999999998899999999999999999999999888764
No 89
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.4e-29 Score=264.06 Aligned_cols=323 Identities=21% Similarity=0.236 Sum_probs=251.4
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHhhc----CC--cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010876 99 GFPDYVMQEISKAGFFEPTPIQAQGWPMALK----GR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 172 (498)
Q Consensus 99 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~----~~--~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl 172 (498)
+.+....+.+...--.+-|+-|..||..+.. ++ |-++|++.|-|||.+++-+++..+.. +++|.|+
T Consensus 578 ~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvL 649 (1139)
T COG1197 578 PPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVL 649 (1139)
T ss_pred CCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEE
Confidence 3455666666654334889999999999763 44 68999999999999999988877765 7899999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHH---Hh-cCCcEEEcChHHHHHHHhccCcccccccEEEecc
Q 010876 173 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 248 (498)
Q Consensus 173 ~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE 248 (498)
|||.-||+|.++.|++-.....+++..+.-=.+..++... +. ...||||+| +.+-...+.+.++++||+||
T Consensus 650 VPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDE 724 (1139)
T COG1197 650 VPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDE 724 (1139)
T ss_pred cccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEec
Confidence 9999999999999998888888998887766655555333 33 348999999 44445667789999999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHH
Q 010876 249 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 328 (498)
Q Consensus 249 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 328 (498)
-|+ |+-.-++-++.++.+..++-||||+-+....++-.-+.+-..+.... .....+.-++. +.+....=
T Consensus 725 EqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP---~~R~pV~T~V~---~~d~~~ir 793 (1139)
T COG1197 725 EQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP---EDRLPVKTFVS---EYDDLLIR 793 (1139)
T ss_pred hhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC---CCCcceEEEEe---cCChHHHH
Confidence 999 56666777788889999999999986666666544444433222111 11222222222 22222222
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 010876 329 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 406 (498)
Q Consensus 329 ~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 406 (498)
..+++++..++++...+|.++..+.++..|+.. ..++.+.||.|+..+-+.++..|.+|+++|||||.+++.|||||+
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPn 873 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPN 873 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCC
Confidence 334566777899999999999999999999875 456889999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCC-CChhHHHHhhcccccCCCcceEEEEeccc
Q 010876 407 VKYVINYDFP-GSLEDYVHRIGRTGRAGAKGTAYTFFTAA 445 (498)
Q Consensus 407 v~~VI~~~~p-~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 445 (498)
+|.+|.-+.. .-.++..|..||+||..+.+-||.++.+.
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9999976655 35889999999999999999999888864
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.1e-29 Score=263.69 Aligned_cols=316 Identities=17% Similarity=0.210 Sum_probs=228.0
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.|++.|.-+--. -++.-|+.++||+|||++|.+|++..+.. +..|+||+||++||.|.++++..+...++
T Consensus 82 ~~ydvQliGg~~--Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 82 RHFDVQLIGGMV--LHEGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CcchHHHhhhhh--hccCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 566666555433 34557999999999999999999987764 44599999999999999999999999999
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHH-HHHHhcc-Cccc-----ccccEEEeccchhhhcC------------
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH-NTNL-----RRVTYLVLDEADRMLDM------------ 255 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-~~~l~~~-~~~l-----~~~~~vI~DE~h~~~~~------------ 255 (498)
+.+.+++++......... ..++|+++||++| .+++... ...+ ..+.++|+||+|.|+=.
T Consensus 152 Ltv~~i~gg~~~~~r~~~--y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~ 229 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAA 229 (896)
T ss_pred ceEEEEeCCCCHHHHHHH--hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCC
Confidence 999999999776554433 3689999999999 8888765 3333 58899999999986510
Q ss_pred ----CcHHHHHHHHHhcCC--------------CC---------------------------------------------
Q 010876 256 ----GFEPQIKKILSQIRP--------------DR--------------------------------------------- 272 (498)
Q Consensus 256 ----~~~~~~~~i~~~~~~--------------~~--------------------------------------------- 272 (498)
.....+..++..+.. ..
T Consensus 230 ~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 230 EDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 011111222222211 01
Q ss_pred -----------------------------------------------------------------------cEEEEcCCC
Q 010876 273 -----------------------------------------------------------------------QTLYWSATW 281 (498)
Q Consensus 273 -----------------------------------------------------------------------~~i~~SAT~ 281 (498)
++-+||+|.
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 222333333
Q ss_pred cHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhh
Q 010876 282 PKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRM 360 (498)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~ 360 (498)
..+..++...|..+.+.+ ....................+|...+.+.+.+. ..+.|+||||+|+..++.++..|.+
T Consensus 390 ~te~~Ef~~iY~l~Vv~I---Ptnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 390 DTEAYEFQQIYNLEVVVI---PTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred hhHHHHHHHHhCCCEEEC---CCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 222222222222111111 000000011111223345667888888777654 4566999999999999999999999
Q ss_pred CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC---------------------------------
Q 010876 361 DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV--------------------------------- 407 (498)
Q Consensus 361 ~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v--------------------------------- 407 (498)
.++++..+|+.+.+.+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999995 99999999999998621
Q ss_pred -----CEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 408 -----KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 408 -----~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
=+||-...+.|..--.|-.||+||.|.+|.+..|++-.|.
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1688888888898999999999999999999999887654
No 91
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.4e-31 Score=261.46 Aligned_cols=309 Identities=19% Similarity=0.257 Sum_probs=236.8
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
+++-|+|.+||.++-.++++++.|.|.+|||.++..++...+.. ..+|||.+|-++|.+|.++++..-...
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~D- 198 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKD- 198 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcc-
Confidence 47899999999999999999999999999999999987777665 678999999999999999998865444
Q ss_pred CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCc
Q 010876 194 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 273 (498)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~ 273 (498)
|...+|+... ...+..+|+|.+.|..++.++.--++.+.+|||||+|.|-+...+-.++.-+-.++++.+
T Consensus 199 ---VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr 268 (1041)
T KOG0948|consen 199 ---VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVR 268 (1041)
T ss_pred ---cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccce
Confidence 3444555433 345678999999999999998888999999999999999999888888888888999999
Q ss_pred EEEEcCCCcHHHHHHHHHHh---cCCeEEEEcCCCcccccceeeeEe---------ecch-----hhhHH----------
Q 010876 274 TLYWSATWPKEVEHLARQYL---YNPYKVIIGSPDLKANHAIRQHVD---------IVSE-----SQKYN---------- 326 (498)
Q Consensus 274 ~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-----~~k~~---------- 326 (498)
.+++|||+|+.. ++++..+ ..|.++...... +..+++++. +++. ++.+.
T Consensus 269 ~VFLSATiPNA~-qFAeWI~~ihkQPcHVVYTdyR---PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 269 FVFLSATIPNAR-QFAEWICHIHKQPCHVVYTDYR---PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred EEEEeccCCCHH-HHHHHHHHHhcCCceEEeecCC---CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 999999999854 4444432 334444433322 112222211 1110 11111
Q ss_pred -------------------------HHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhhCCCC---------------
Q 010876 327 -------------------------KLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWP--------------- 364 (498)
Q Consensus 327 -------------------------~l~~~l~~~~--~~~~vlIf~~s~~~~~~l~~~L~~~~~~--------------- 364 (498)
.+..+++.+. ...++|||+-++++|+.+|-.+.+..++
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nA 424 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNA 424 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHH
Confidence 1222233222 2248999999999999999888654322
Q ss_pred ------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEE----cCC-
Q 010876 365 ------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YDF- 415 (498)
Q Consensus 365 ------------------------~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~~- 415 (498)
+.++|+++-+--++-++-.|..|-+++|+||.+++.|+|+|.-++|+- ||-
T Consensus 425 i~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~ 504 (1041)
T KOG0948|consen 425 IDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGK 504 (1041)
T ss_pred HHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCc
Confidence 237899999999999999999999999999999999999998777762 232
Q ss_pred ---CCChhHHHHhhcccccCCCc--ceEEEEeccc
Q 010876 416 ---PGSLEDYVHRIGRTGRAGAK--GTAYTFFTAA 445 (498)
Q Consensus 416 ---p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~ 445 (498)
..|.-+|+||.|||||.|.+ |.|++++++.
T Consensus 505 ~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 505 KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 23678999999999999976 8888888764
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=6.5e-29 Score=252.55 Aligned_cols=292 Identities=22% Similarity=0.256 Sum_probs=194.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH---
Q 010876 134 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV--- 210 (498)
Q Consensus 134 i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 210 (498)
++.++||||||.+|+..+. .... .+.++||++|+++|+.|+++.+++.. +..+..++++.+..+..
T Consensus 1 LL~g~TGsGKT~v~l~~i~-~~l~-------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIE-KVLA-------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHH-HHHH-------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 4689999999999876544 3333 26679999999999999999998754 35677888877654432
Q ss_pred HHHh-cCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-----cH-HHHHHHHHhcCCCCcEEEEcCCCcH
Q 010876 211 RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----FE-PQIKKILSQIRPDRQTLYWSATWPK 283 (498)
Q Consensus 211 ~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-----~~-~~~~~i~~~~~~~~~~i~~SAT~~~ 283 (498)
..+. ...+|||+|+..+. ..+.++++|||||.|.....+ |. ..+... .....+.+++++|||++.
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~-ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVY-RAKKFNCPVVLGSATPSL 141 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHH-HHHhcCCCEEEEeCCCCH
Confidence 2222 35799999998763 347789999999999866432 11 122222 233467899999999875
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchh---hhHHHHHHHHHh-hcCCCeEEEEeCCccc---------
Q 010876 284 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES---QKYNKLVKLLED-IMDGSRILIFMDTKKG--------- 350 (498)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~-~~~~~~vlIf~~s~~~--------- 350 (498)
+....+.. .....+..............+.+...... .--..+.+.+++ +..++++|||+|++..
T Consensus 142 es~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 142 ESYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred HHHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhC
Confidence 54443321 11111111110000011111111111110 011234444443 4456689999887653
Q ss_pred ---------------------------------------------------HHHHHHHHhhC--CCCeEEecCCCCHHHH
Q 010876 351 ---------------------------------------------------CDQITRQLRMD--GWPALSIHGDKSQAER 377 (498)
Q Consensus 351 ---------------------------------------------------~~~l~~~L~~~--~~~~~~lh~~~~~~~r 377 (498)
.+.+++.|++. +.++..+|++++...+
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKG 299 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCcc
Confidence 37778888765 6789999999987665
Q ss_pred --HHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCC------------ChhHHHHhhcccccCCCcceEEEEec
Q 010876 378 --DWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG------------SLEDYVHRIGRTGRAGAKGTAYTFFT 443 (498)
Q Consensus 378 --~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~------------s~~~~~Qr~GR~~R~g~~g~~~~~~~ 443 (498)
+.+++.|++|+.+|||+|+++++|+|+|++++|+.++.+. ....|+|++||+||.+..|.+++...
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8999999999999999999999999999999886444321 24678999999999999999986654
Q ss_pred ccc
Q 010876 444 AAN 446 (498)
Q Consensus 444 ~~~ 446 (498)
..+
T Consensus 380 ~p~ 382 (505)
T TIGR00595 380 NPN 382 (505)
T ss_pred CCC
Confidence 333
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.8e-29 Score=260.44 Aligned_cols=316 Identities=20% Similarity=0.225 Sum_probs=237.7
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.|++.|.-+.-.+.+| -|+.+.||+|||++|.+|++...+. +..|-|++||..||.|.++++..+...++
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 7888888777655554 5999999999999999999755443 33478999999999999999999999999
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHH-HHHHhccC------cccccccEEEeccchhhhcC------------
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLRRVTYLVLDEADRMLDM------------ 255 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-~~~l~~~~------~~l~~~~~vI~DE~h~~~~~------------ 255 (498)
+.+.++.++.+...+...+ .++|+++|+..| .+++.... ..++.+.++|+||||.|+=.
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 9999999988776555443 489999999999 88887553 23678899999999986500
Q ss_pred ----CcHHHHHHHHHhcCC-------------------------------------------------------------
Q 010876 256 ----GFEPQIKKILSQIRP------------------------------------------------------------- 270 (498)
Q Consensus 256 ----~~~~~~~~i~~~~~~------------------------------------------------------------- 270 (498)
.....+..++..+..
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 011111112111110
Q ss_pred --------------------------------------------------------CCcEEEEcCCCcHHHHHHHHHHhc
Q 010876 271 --------------------------------------------------------DRQTLYWSATWPKEVEHLARQYLY 294 (498)
Q Consensus 271 --------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~ 294 (498)
-.++.+||+|...+..++...|..
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 024566777766555555555443
Q ss_pred CCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010876 295 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 373 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 373 (498)
+...+- ... ................+|...+.+.+.+. ..+.++||||+|+..++.++..|...++++..+|+.
T Consensus 389 ~vv~IP--tnk-p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-- 463 (830)
T PRK12904 389 DVVVIP--TNR-PMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-- 463 (830)
T ss_pred CEEEcC--CCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--
Confidence 333221 111 11111111233446677888888888763 345699999999999999999999999999999995
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC--------------------------------------CEEEEcCC
Q 010876 374 QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV--------------------------------------KYVINYDF 415 (498)
Q Consensus 374 ~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v--------------------------------------~~VI~~~~ 415 (498)
+.+|+..+..|..+...|+|||++++||+||+-- =+||-...
T Consensus 464 q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer 543 (830)
T PRK12904 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER 543 (830)
T ss_pred hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc
Confidence 8899999999999999999999999999999642 27888888
Q ss_pred CCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 416 PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 416 p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
+.|..--.|-.||+||.|.+|.+..|++-.|.
T Consensus 544 hesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 544 HESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 99999999999999999999999999987654
No 94
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=9.4e-29 Score=264.47 Aligned_cols=315 Identities=20% Similarity=0.244 Sum_probs=217.3
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
++++||.+++.+++ .+.+.|++.++|.|||+.++. ++.++.... +....+|||||. ++..+|.+++.+|.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999999976 467899999999999988544 445544321 122348999997 67788999999998
Q ss_pred CCCCceEEEEeCCCCCchhHHH---HhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHh
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRD---LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 267 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~ 267 (498)
+. +.+..++|.......... .....+|+|+|++.+...... +.-..+++||+||||++.+. ...+.+.+..
T Consensus 243 p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~ 316 (1033)
T PLN03142 243 PV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRL 316 (1033)
T ss_pred CC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHH
Confidence 64 556666665433222211 123578999999998654321 22235789999999999875 3445555555
Q ss_pred cCCCCcEEEEcCCCcH-HHHH---HHHHH-------------------------------------------------hc
Q 010876 268 IRPDRQTLYWSATWPK-EVEH---LARQY-------------------------------------------------LY 294 (498)
Q Consensus 268 ~~~~~~~i~~SAT~~~-~~~~---~~~~~-------------------------------------------------~~ 294 (498)
+. ....+++|+|+-. ...+ ++..+ +.
T Consensus 317 L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 FS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred hh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 54 4566899999521 1111 11000 00
Q ss_pred CCeE--EEEcCCCcc----------------ccc---ce----ee----------------------eEeecchhhhHHH
Q 010876 295 NPYK--VIIGSPDLK----------------ANH---AI----RQ----------------------HVDIVSESQKYNK 327 (498)
Q Consensus 295 ~~~~--~~~~~~~~~----------------~~~---~~----~~----------------------~~~~~~~~~k~~~ 327 (498)
.... +.+...... ... .+ .+ .-..+..+.|...
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 0000 000000000 000 00 00 0001123456667
Q ss_pred HHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC---CCcEEEEeccccccCC
Q 010876 328 LVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG---KSPIMTATDVAARGLD 403 (498)
Q Consensus 328 l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g---~~~vLvaT~~~~~Gld 403 (498)
|..+|..+. .+.++|||++.....+.|.++|...++.+..+||+++..+|+.+++.|++. ...+|++|.+++.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 777776654 456999999999999999999999999999999999999999999999853 3457899999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEe
Q 010876 404 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 442 (498)
Q Consensus 404 i~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 442 (498)
+..+++||+||++||+....|++||+.|.|+...+.++.
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 999999999999999999999999999999987665543
No 95
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=6.2e-29 Score=260.88 Aligned_cols=311 Identities=21% Similarity=0.268 Sum_probs=231.9
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
+.|-++|++++..+..+.+++++||||+|||+++..++...+.. +.+++|++|.++|.+|.+..+.......
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHHHhhhh
Confidence 48999999999999999999999999999999988876666554 5669999999999999998887433222
Q ss_pred CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCc
Q 010876 194 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 273 (498)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~ 273 (498)
.-.+..++|+.+. ..++.++|+|.+.|.+++..+...+..+.+|||||+|.|.+...+..++.++-.++...+
T Consensus 190 ~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~ 262 (1041)
T COG4581 190 ADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVR 262 (1041)
T ss_pred hhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCc
Confidence 2234556666543 556899999999999999999888999999999999999999999999999999999999
Q ss_pred EEEEcCCCcHHHHHHHHHH---hcCCeEEEEcCCCcccccceeeeEe-------ecchhh--------------------
Q 010876 274 TLYWSATWPKEVEHLARQY---LYNPYKVIIGSPDLKANHAIRQHVD-------IVSESQ-------------------- 323 (498)
Q Consensus 274 ~i~~SAT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-------------------- 323 (498)
+++||||.|+.. ++...+ -..+..++..... +..+.+++. .++...
T Consensus 263 ~v~LSATv~N~~-EF~~Wi~~~~~~~~~vv~t~~R---pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~ 338 (1041)
T COG4581 263 FVFLSATVPNAE-EFAEWIQRVHSQPIHVVSTEHR---PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEK 338 (1041)
T ss_pred EEEEeCCCCCHH-HHHHHHHhccCCCeEEEeecCC---CCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchh
Confidence 999999998743 343332 2334444333221 111111111 111100
Q ss_pred ---------------------------hHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC---------------
Q 010876 324 ---------------------------KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--------------- 361 (498)
Q Consensus 324 ---------------------------k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~--------------- 361 (498)
+...++..+... ...++|+|+-+++.|+.++..+...
T Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~-~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~i 417 (1041)
T COG4581 339 VRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKD-NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREI 417 (1041)
T ss_pred ccccCccccccccccccccCCcccccccchHHHhhhhhh-cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHH
Confidence 001112222111 2238999999999998888777421
Q ss_pred -------------CCC-------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEE----
Q 010876 362 -------------GWP-------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI---- 411 (498)
Q Consensus 362 -------------~~~-------------~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI---- 411 (498)
+++ +.++|++|-+..|..+...|..|-++|++||.+++.|+|+|.-++|+
T Consensus 418 i~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~ 497 (1041)
T COG4581 418 IDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLS 497 (1041)
T ss_pred HHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeE
Confidence 121 23679999999999999999999999999999999999999877766
Q ss_pred EcC----CCCChhHHHHhhcccccCCCc--ceEEEEecc
Q 010876 412 NYD----FPGSLEDYVHRIGRTGRAGAK--GTAYTFFTA 444 (498)
Q Consensus 412 ~~~----~p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~ 444 (498)
.+| .+-++.+|.|+.|||||.|.+ |.+++...+
T Consensus 498 K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 498 KFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred EecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 222 234789999999999999986 777766443
No 96
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5.7e-28 Score=250.38 Aligned_cols=181 Identities=18% Similarity=0.253 Sum_probs=141.0
Q ss_pred CccccCCCHHHHHHHHHhcCceE-ecCCCCCCcCCcccCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHhhcCC
Q 010876 61 SPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVMQEIS-----KAGFFEP---TPIQAQGWPMALKGR 131 (498)
Q Consensus 61 ~~~~~~~~~~e~~~~~~~~~i~~-~~~~~~~~~~~f~~~~l~~~~~~~l~-----~~~~~~~---~~~Q~~~i~~~l~~~ 131 (498)
.+....++++++..--....... .+..... .-.+.+.+...+.+.+. ..|+..| +|+|.++++.++.++
T Consensus 31 e~~~~~lsd~eL~~kt~~~k~~l~~~~~ld~--~l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~ 108 (970)
T PRK12899 31 DEKFSSLSDDELRNKTAELKQRYQDGESLDK--LLPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHK 108 (970)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHcCCchHH--HHHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCC
Confidence 34567777777644322211111 1111111 01245678888888876 5788888 999999999999999
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 211 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (498)
++++.++||+|||++|++|++..+.. +..++||+||++||.|.++++..+....++++.+++||.....+..
T Consensus 109 gvIAeaqTGeGKTLAf~LP~l~~aL~--------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~ 180 (970)
T PRK12899 109 GFITEMQTGEGKTLTAVMPLYLNALT--------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKE 180 (970)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHhh--------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 99999999999999999999988764 2238999999999999999999999999999999999998877765
Q ss_pred HHhcCCcEEEcChHHH-HHHHhccCcccc-------cccEEEeccchhhh
Q 010876 212 DLQKGVEIVIATPGRL-IDMLESHNTNLR-------RVTYLVLDEADRML 253 (498)
Q Consensus 212 ~~~~~~~Ivi~T~~~l-~~~l~~~~~~l~-------~~~~vI~DE~h~~~ 253 (498)
.+ .++|+|+||++| .+++......++ .+.++|+||||.|+
T Consensus 181 ~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 181 IY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred Hc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 54 589999999999 999987755554 45899999999876
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=9.2e-29 Score=255.63 Aligned_cols=316 Identities=20% Similarity=0.242 Sum_probs=229.3
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.|++.|.-+--.+.+|+ |+.+.||+|||+++.+|++..... |..|-+++|+.-||.|-++++..+...++
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~LG 149 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWLG 149 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhcC
Confidence 78888888876665554 999999999999999998888776 67799999999999999999999999999
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHH-HHHhcc------CcccccccEEEeccchhhhcC------------
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRMLDM------------ 255 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~-~~l~~~------~~~l~~~~~vI~DE~h~~~~~------------ 255 (498)
+.+.++.++...... .-...++|+++|...|- ++|... ......+.+.|+||+|.++=.
T Consensus 150 l~vg~i~~~~~~~~r--~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~ 227 (796)
T PRK12906 150 LTVGLNLNSMSPDEK--RAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQA 227 (796)
T ss_pred CeEEEeCCCCCHHHH--HHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCC
Confidence 999999887654433 33346899999987652 233221 112456789999999975510
Q ss_pred -C---cHHHHHHHHHhcCC-------------------------------------------------------------
Q 010876 256 -G---FEPQIKKILSQIRP------------------------------------------------------------- 270 (498)
Q Consensus 256 -~---~~~~~~~i~~~~~~------------------------------------------------------------- 270 (498)
. ....+..++..+..
T Consensus 228 ~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 307 (796)
T PRK12906 228 EKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRA 307 (796)
T ss_pred CcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHH
Confidence 0 11111111111100
Q ss_pred -------------------------------------------------------------------CCcEEEEcCCCcH
Q 010876 271 -------------------------------------------------------------------DRQTLYWSATWPK 283 (498)
Q Consensus 271 -------------------------------------------------------------------~~~~i~~SAT~~~ 283 (498)
-.++.+||+|...
T Consensus 308 ~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~ 387 (796)
T PRK12906 308 NYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKT 387 (796)
T ss_pred HHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHH
Confidence 0134455555544
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCC
Q 010876 284 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDG 362 (498)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~ 362 (498)
+..++...|..+.+.+ .... .................|...+.+.+... ..+.++||||+|+..++.++..|.+.+
T Consensus 388 e~~Ef~~iY~l~vv~I--Ptnk-p~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 388 EEEEFREIYNMEVITI--PTNR-PVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHHhCCCEEEc--CCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4444433333222211 1111 00111111223345667888888888654 455699999999999999999999999
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC---CCC-----EEEEcCCCCChhHHHHhhcccccCCC
Q 010876 363 WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---DVK-----YVINYDFPGSLEDYVHRIGRTGRAGA 434 (498)
Q Consensus 363 ~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~---~v~-----~VI~~~~p~s~~~~~Qr~GR~~R~g~ 434 (498)
+++..+|+.+...++..+...++.|. |+|||++++||+||+ +|. +||+++.|.|...|.|++||+||.|.
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC
Confidence 99999999998888888777777766 999999999999995 888 99999999999999999999999999
Q ss_pred cceEEEEeccccH
Q 010876 435 KGTAYTFFTAANA 447 (498)
Q Consensus 435 ~g~~~~~~~~~~~ 447 (498)
+|.+..|++.+|.
T Consensus 543 ~G~s~~~~sleD~ 555 (796)
T PRK12906 543 PGSSRFYLSLEDD 555 (796)
T ss_pred CcceEEEEeccch
Confidence 9999999988754
No 98
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=250.80 Aligned_cols=342 Identities=20% Similarity=0.270 Sum_probs=245.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHH--HHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 010876 100 FPDYVMQEISKAGFFEPTPIQAQGW--PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 177 (498)
Q Consensus 100 l~~~~~~~l~~~~~~~~~~~Q~~~i--~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~ 177 (498)
++....-..+..|...++.||.+++ +.++.+++.|..+||+.|||+++.+-++..+... ...++++.|..+
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~vs 280 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYVS 280 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecceee
Confidence 3333333445578889999999997 4578899999999999999999999888887763 456999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc--cCcccccccEEEeccchhhhcC
Q 010876 178 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--HNTNLRRVTYLVLDEADRMLDM 255 (498)
Q Consensus 178 La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~--~~~~l~~~~~vI~DE~h~~~~~ 255 (498)
.+..-...+..|....++.+.+.+|..+.... .+...+.|||.|+-..++.. ..-.+..+++||+||.|.+.+.
T Consensus 281 iv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 281 IVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 99998999999999999999998876655332 23468999999995444332 1223567899999999999999
Q ss_pred CcHHHHHHHHHhc-----CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEE-EcCCCcccccceeeeEeec----------
Q 010876 256 GFEPQIKKILSQI-----RPDRQTLYWSATWPKEVEHLARQYLYNPYKVI-IGSPDLKANHAIRQHVDIV---------- 319 (498)
Q Consensus 256 ~~~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------- 319 (498)
+.+..++.++.++ ....|+|+||||+|+ +. ++..++...+... .....+.....+.......
T Consensus 357 ~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N-~~-lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia 434 (1008)
T KOG0950|consen 357 GRGAILELLLAKILYENLETSVQIIGMSATIPN-NS-LLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIA 434 (1008)
T ss_pred ccchHHHHHHHHHHHhccccceeEeeeecccCC-hH-HHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhh
Confidence 9888888877654 345789999999987 32 2233332211111 1111111111111111111
Q ss_pred -------chhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhC------------------------------
Q 010876 320 -------SESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD------------------------------ 361 (498)
Q Consensus 320 -------~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~------------------------------ 361 (498)
...+. +.+..++.+.. ++.++||||++++.|+.++..+...
T Consensus 435 ~l~~~~~g~~dp-D~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~l 513 (1008)
T KOG0950|consen 435 NLYSSNLGDEDP-DHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGIL 513 (1008)
T ss_pred hhhhhhcccCCC-cceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCccc
Confidence 00011 22333333332 3446999999999999888665221
Q ss_pred --------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcC----CCCChhHHHHhhccc
Q 010876 362 --------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD----FPGSLEDYVHRIGRT 429 (498)
Q Consensus 362 --------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~----~p~s~~~~~Qr~GR~ 429 (498)
.+.+.++|++++.++|+.+...|+.|...|++||++++.|+|+|..+++|-.- ...+..+|.||+|||
T Consensus 514 d~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRA 593 (1008)
T KOG0950|consen 514 DPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRA 593 (1008)
T ss_pred chHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhh
Confidence 13466889999999999999999999999999999999999999998888433 234678999999999
Q ss_pred ccCCCc--ceEEEEeccccHHHHHHHHH
Q 010876 430 GRAGAK--GTAYTFFTAANARFAKELIT 455 (498)
Q Consensus 430 ~R~g~~--g~~~~~~~~~~~~~~~~l~~ 455 (498)
||+|-+ |.+++++.+.+.+....+++
T Consensus 594 GR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 594 GRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhcccccCcceEEEeeccchhHHHHHHh
Confidence 999865 89999999988776665443
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=5.9e-28 Score=263.24 Aligned_cols=308 Identities=16% Similarity=0.214 Sum_probs=197.2
Q ss_pred CCCcHHHHHHHHHhh----c-CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 010876 114 FEPTPIQAQGWPMAL----K-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 188 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l----~-~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~ 188 (498)
..++++|.+|+..+. . .+.++++++||||||.+++. ++..+... ....+||||+|+++|+.|+.+.|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 368999999998765 2 35799999999999987544 44444432 1246899999999999999999998
Q ss_pred hcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc-----CcccccccEEEeccchhhhcC--------
Q 010876 189 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----NTNLRRVTYLVLDEADRMLDM-------- 255 (498)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~-----~~~l~~~~~vI~DE~h~~~~~-------- 255 (498)
+..........+++...... ........|+|+|+++|...+... ...+..+++||+||||+....
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 75432212111221110000 011234789999999997765321 234678899999999985310
Q ss_pred -------CcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHH--------------HHhcC---CeEEEEcCCC--cc--
Q 010876 256 -------GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR--------------QYLYN---PYKVIIGSPD--LK-- 307 (498)
Q Consensus 256 -------~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~--------------~~~~~---~~~~~~~~~~--~~-- 307 (498)
.+...++.++..+ +...|+||||+......+.. -++.+ |+.+...... ..
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 1235677777755 35789999998643322211 11110 1111110000 00
Q ss_pred ccccee------eeE--eecch---------------hhhHHHHHH-HHHhh--cCCCeEEEEeCCcccHHHHHHHHhhC
Q 010876 308 ANHAIR------QHV--DIVSE---------------SQKYNKLVK-LLEDI--MDGSRILIFMDTKKGCDQITRQLRMD 361 (498)
Q Consensus 308 ~~~~~~------~~~--~~~~~---------------~~k~~~l~~-~l~~~--~~~~~vlIf~~s~~~~~~l~~~L~~~ 361 (498)
....+. ..+ ...+. ......+.. +++.+ ...+|+||||.++.+|+.+++.|...
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 000000 000 00000 001111111 11111 12369999999999999999888652
Q ss_pred ------CC---CeEEecCCCCHHHHHHHHHHHhcCCC-cEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhccccc
Q 010876 362 ------GW---PALSIHGDKSQAERDWVLSEFKAGKS-PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR 431 (498)
Q Consensus 362 ------~~---~~~~lh~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R 431 (498)
++ .+..+||+.+ ++..++++|+++.. +|+|+++++.+|+|+|.+.+||+++++.|...|+||+||+.|
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 22 3567888875 56789999999887 589999999999999999999999999999999999999999
Q ss_pred CC
Q 010876 432 AG 433 (498)
Q Consensus 432 ~g 433 (498)
.-
T Consensus 800 ~~ 801 (1123)
T PRK11448 800 LC 801 (1123)
T ss_pred CC
Confidence 63
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.4e-26 Score=210.52 Aligned_cols=306 Identities=20% Similarity=0.242 Sum_probs=215.5
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
++++.|+.+-..+. +.+++++.|-||+|||.. +.+.+...+.+ |.++.+.+|+...+.+++..++.-.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 79999999876654 567899999999999975 56667776663 7889999999999999999998765
Q ss_pred CCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHH-HHHhcC
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKK-ILSQIR 269 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~-i~~~~~ 269 (498)
.. ..+.++||++.... ...++|+|..+|+.+- +.++++|+||+|..--.. ...+.. +-+...
T Consensus 169 ~~--~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~-d~~L~~Av~~ark 231 (441)
T COG4098 169 SN--CDIDLLYGDSDSYF-------RAPLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSD-DQSLQYAVKKARK 231 (441)
T ss_pred cc--CCeeeEecCCchhc-------cccEEEEehHHHHHHH-------hhccEEEEeccccccccC-CHHHHHHHHHhhc
Confidence 44 56788898875421 2589999998887763 357899999999765433 223333 333445
Q ss_pred CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHH------HHHHHHHhhc-CCCeEE
Q 010876 270 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYN------KLVKLLEDIM-DGSRIL 342 (498)
Q Consensus 270 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~------~l~~~l~~~~-~~~~vl 342 (498)
..-.+|.+|||+++..+.-+..-.... +.+....-..+..+...+.......++. .|...|+... .+.+++
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g~~~~--~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l 309 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKGNLRI--LKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL 309 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhCCeeE--eecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence 667789999999887765543322111 1111111111122222333333333331 4556665533 456999
Q ss_pred EEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCC--CC
Q 010876 343 IFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP--GS 418 (498)
Q Consensus 343 If~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p--~s 418 (498)
||++++...+.++..|+.. ...+..+|+. ...|.+..+.|++|++++||+|.+++||+.+|++++.+.-.-- .+
T Consensus 310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfT 387 (441)
T COG4098 310 IFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFT 387 (441)
T ss_pred EEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccccc
Confidence 9999999999999999543 3345778886 4568888999999999999999999999999999987754433 57
Q ss_pred hhHHHHhhcccccCCC--cceEEEEeccccHHH
Q 010876 419 LEDYVHRIGRTGRAGA--KGTAYTFFTAANARF 449 (498)
Q Consensus 419 ~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~~~~ 449 (498)
.+..+|..||+||.-. +|..+.|..-....+
T Consensus 388 esaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM 420 (441)
T COG4098 388 ESALVQIAGRVGRSLERPTGDVLFFHYGKSKAM 420 (441)
T ss_pred HHHHHHHhhhccCCCcCCCCcEEEEeccchHHH
Confidence 8999999999999643 477665555444433
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.1e-26 Score=240.58 Aligned_cols=316 Identities=18% Similarity=0.211 Sum_probs=226.3
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.|++.|.-+- +.-++.-|+.++||.|||++|.+|++...+. +..|.||+|+..||.|..+++..+....+
T Consensus 82 ~~ydVQliGg--l~L~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLLGG--MVLDSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHhcc--hHhcCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 5666666543 3335567999999999999999999887765 45599999999999999999999999999
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHH-HHHHhcc-Cccc-----ccccEEEeccchhhhcCC-----------
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH-NTNL-----RRVTYLVLDEADRMLDMG----------- 256 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-~~~l~~~-~~~l-----~~~~~vI~DE~h~~~~~~----------- 256 (498)
+.+.++.++.... .+...-.++|+++||+.| .++|... .... ..+.++|+||+|.++-..
T Consensus 152 lsv~~i~~~~~~~--~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQ--EKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHH--HHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 9999999887642 223334689999999998 8887665 3333 678999999999865211
Q ss_pred -----cHHHHHHHHHhcC-------------------CCC----------------------------------------
Q 010876 257 -----FEPQIKKILSQIR-------------------PDR---------------------------------------- 272 (498)
Q Consensus 257 -----~~~~~~~i~~~~~-------------------~~~---------------------------------------- 272 (498)
....+..++..+. ...
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 1111111111110 001
Q ss_pred ----------------------------------------------------------------------------cEEE
Q 010876 273 ----------------------------------------------------------------------------QTLY 276 (498)
Q Consensus 273 ----------------------------------------------------------------------------~~i~ 276 (498)
++.+
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence 2233
Q ss_pred EcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHH
Q 010876 277 WSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQIT 355 (498)
Q Consensus 277 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~ 355 (498)
||+|...+..++...|..+.+.+- ... .....-..........+|...+++.+.+.. .+.++||||.|+..++.++
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IP--Tnk-p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 390 MTGTADTEAFEFQHIYGLDTVVVP--TNR-PMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred ccCCChHHHHHHHHHhCCCEEECC--CCC-CccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 333333322222222222111110 000 000001111223355678888887776653 5569999999999999999
Q ss_pred HHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC----------------------------
Q 010876 356 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV---------------------------- 407 (498)
Q Consensus 356 ~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v---------------------------- 407 (498)
..|...++++..+|+..++.+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIR 544 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998 99999999999998621
Q ss_pred ---------CEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 408 ---------KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 408 ---------~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
=+||-...+.|..--.|-.||+||.|.+|.+..|++-.|.
T Consensus 545 ~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 545 HDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 2788888899999999999999999999999999987764
No 102
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=3.9e-26 Score=238.60 Aligned_cols=309 Identities=20% Similarity=0.278 Sum_probs=217.6
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hcCCCC
Q 010876 116 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSK 194 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~-~~~~~~ 194 (498)
.+....+.+..+.+++.++++++||||||+..-.. +++... ..+.++.++-|+|--|..+++.+.. ++...+
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~----lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQF----LLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHH----HHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 34455666777788889999999999999863222 222221 2355789999999666666666653 333333
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh-hhcCCcH-HHHHHHHHhcCCCC
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFE-PQIKKILSQIRPDR 272 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~-~~~~~~~-~~~~~i~~~~~~~~ 272 (498)
-.|....-.. ........|-++|.+.|+..+.++.. |+.+++||+||+|. -++.++. ..+..++...+++.
T Consensus 124 ~~VGY~iRfe------~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 124 ETVGYSIRFE------SKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred ceeeEEEEee------ccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 2222111111 11233568999999999999987765 89999999999994 3443333 34555677777789
Q ss_pred cEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeE-eecchhh-hHHHHHHHHHhhc--CCCeEEEEeCCc
Q 010876 273 QTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV-DIVSESQ-KYNKLVKLLEDIM--DGSRILIFMDTK 348 (498)
Q Consensus 273 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-k~~~l~~~l~~~~--~~~~vlIf~~s~ 348 (498)
++|.||||+. .+.+...|..-|+...-+.. ..++..+ ....... -...+...+.... ..+.+|||.+..
T Consensus 197 KiIimSATld--~~rfs~~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~ 269 (845)
T COG1643 197 KLIIMSATLD--AERFSAYFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQ 269 (845)
T ss_pred eEEEEecccC--HHHHHHHcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcH
Confidence 9999999985 45555555444544332221 1222222 1111222 3344444444332 346899999999
Q ss_pred ccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCC---------
Q 010876 349 KGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF--------- 415 (498)
Q Consensus 349 ~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~--------- 415 (498)
.+.+.+++.|.+ ....+..+||.++.+++..+++--..++.+|++||++++++|.||++.+||+.+.
T Consensus 270 ~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~ 349 (845)
T COG1643 270 REIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPR 349 (845)
T ss_pred HHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccc
Confidence 999999999987 3467889999999999999988888888889999999999999999999997664
Q ss_pred ---------CCChhHHHHhhcccccCCCcceEEEEecccc
Q 010876 416 ---------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 446 (498)
Q Consensus 416 ---------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 446 (498)
|.|.++..||.|||||. .+|.||-++++++
T Consensus 350 ~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 350 TGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred cCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 34788999999999999 6999999999854
No 103
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.95 E-value=3e-26 Score=226.32 Aligned_cols=305 Identities=23% Similarity=0.316 Sum_probs=213.5
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH-----Hhc
Q 010876 116 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-----KFG 190 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~-----~~~ 190 (498)
.+.+-.+.+..+..++-+|+.++||||||+. +-+++.+..+... | ++.+..|+|--|..+++... +++
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG~~~~--g-~I~~TQPRRVAavslA~RVAeE~~~~lG 124 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAGFASS--G-KIACTQPRRVAAVSLAKRVAEEMGCQLG 124 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhcccccC--C-cEEeecCchHHHHHHHHHHHHHhCCCcC
Confidence 3445567777788888999999999999986 3355555433322 2 38999999965555554444 233
Q ss_pred CCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh-hhcCC-cHHHHHHHHHhc
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMG-FEPQIKKILSQI 268 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~-~~~~~-~~~~~~~i~~~~ 268 (498)
...+..+ -+.+.. .....|.+.|.+.|++.+..+.. |+++++||+||||. -+..+ ..-.++++++.
T Consensus 125 ~~VGY~I--RFed~t--------s~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~- 192 (674)
T KOG0922|consen 125 EEVGYTI--RFEDST--------SKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKK- 192 (674)
T ss_pred ceeeeEE--EecccC--------CCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhc-
Confidence 3333222 222221 22468999999999998776554 89999999999994 12111 22344444443
Q ss_pred CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhh---cCCCeEEEEe
Q 010876 269 RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI---MDGSRILIFM 345 (498)
Q Consensus 269 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~vlIf~ 345 (498)
+++.++|+||||+. .+.+...|...++..+-+.. ..++..+...+..+.....+..+.++ .+.+-+|||.
T Consensus 193 R~~LklIimSATld--a~kfS~yF~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFL 265 (674)
T KOG0922|consen 193 RPDLKLIIMSATLD--AEKFSEYFNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFL 265 (674)
T ss_pred CCCceEEEEeeeec--HHHHHHHhcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEe
Confidence 46789999999985 45555555554554443332 22333333334444444444433332 3455799999
Q ss_pred CCcccHHHHHHHHhhC----C--C--CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCC--
Q 010876 346 DTKKGCDQITRQLRMD----G--W--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF-- 415 (498)
Q Consensus 346 ~s~~~~~~l~~~L~~~----~--~--~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~-- 415 (498)
...++.+.+++.|.+. . . -+..+||.++.+++..+++.-..|..+|+++|+++++.+.|+.+.+||+.+.
T Consensus 266 tGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK 345 (674)
T KOG0922|consen 266 TGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVK 345 (674)
T ss_pred CCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceE
Confidence 9999999999998764 1 1 2467999999999999999888999999999999999999999999997653
Q ss_pred ----------------CCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 416 ----------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 416 ----------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
|-|.++-.||.|||||. .+|.||.++++++.
T Consensus 346 ~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 346 QKKYNPRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred EEeeccccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 45889999999999999 68999999998653
No 104
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=2e-26 Score=203.43 Aligned_cols=165 Identities=33% Similarity=0.548 Sum_probs=142.3
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCce
Q 010876 117 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 196 (498)
Q Consensus 117 ~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~ 196 (498)
||+|.++++.+.+++++++.+|||+|||++++++++..+... ...++++++|+++|++|..+.+.+++...+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 689999999999999999999999999999999999888763 13489999999999999999999999888889
Q ss_pred EEEEeCCCCCc-hhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcC--CCCc
Q 010876 197 STCIYGGVPKG-PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR--PDRQ 273 (498)
Q Consensus 197 ~~~~~~~~~~~-~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~--~~~~ 273 (498)
+..++++.... .....+..+++|+|+||++|.+.+.....++.++++||+||+|.+....+...+..++..+. ...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99999888754 33344456799999999999999988655777899999999999999888888888888873 3589
Q ss_pred EEEEcCCCcHHHHH
Q 010876 274 TLYWSATWPKEVEH 287 (498)
Q Consensus 274 ~i~~SAT~~~~~~~ 287 (498)
++++|||+++.++.
T Consensus 155 ~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 155 IILLSATLPSNVEK 168 (169)
T ss_dssp EEEEESSSTHHHHH
T ss_pred EEEEeeCCChhHhh
Confidence 99999999966654
No 105
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.95 E-value=9.8e-26 Score=223.96 Aligned_cols=314 Identities=23% Similarity=0.299 Sum_probs=225.1
Q ss_pred CCcHHHHHHHHHhhc----CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~----~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.+++||.+.++++.+ |-+.|+...+|.|||++ .++++.++.... ...|| .||+||...|.+ |..++.+|.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~---~~~GP-fLVi~P~StL~N-W~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK---GIPGP-FLVIAPKSTLDN-WMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc---CCCCC-eEEEeeHhhHHH-HHHHHHHhC
Confidence 689999999999763 56799999999999987 444566665421 12355 699999887765 889999998
Q ss_pred CCCCceEEEEeCCCCCchhH-HHH--hcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHh
Q 010876 191 ASSKIKSTCIYGGVPKGPQV-RDL--QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 267 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~ 267 (498)
+. +.+++++|+...+... +++ ....+|+|+|++..+.-- ..+.--.+.|+|+||+|++.+. ...+.++++.
T Consensus 241 P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~ 314 (971)
T KOG0385|consen 241 PS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNE--KSKLSKILRE 314 (971)
T ss_pred CC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcch--hhHHHHHHHH
Confidence 76 7788888876433322 222 236899999999976531 1122235689999999999987 4556677777
Q ss_pred cCCCCcEEEEcCCCcH-HHH---H--------------------------------------------------------
Q 010876 268 IRPDRQTLYWSATWPK-EVE---H-------------------------------------------------------- 287 (498)
Q Consensus 268 ~~~~~~~i~~SAT~~~-~~~---~-------------------------------------------------------- 287 (498)
+.. ...+++|+|+-. .+. .
T Consensus 315 f~~-~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKT-DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hcc-cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 753 345777888311 000 0
Q ss_pred ----------------------------------------------HHHHHhcCCeEEEEcCCCcccccceeeeEeecch
Q 010876 288 ----------------------------------------------LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE 321 (498)
Q Consensus 288 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (498)
.+++.+.+|+.+....+. ......-..+..
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg----~pyttdehLv~n 469 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG----PPYTTDEHLVTN 469 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC----CCCCcchHHHhc
Confidence 011111122211110000 001111112345
Q ss_pred hhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCC---CcEEEEecc
Q 010876 322 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK---SPIMTATDV 397 (498)
Q Consensus 322 ~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~---~~vLvaT~~ 397 (498)
+.|...|..+|..+. .+++||||.+.-...+.|.+++.-.++....+.|.++.++|...++.|.... .-+|++|.+
T Consensus 470 SGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred CcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 667777777777654 4569999999999999999999989999999999999999999999998643 447899999
Q ss_pred ccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccc
Q 010876 398 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 445 (498)
Q Consensus 398 ~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 445 (498)
.+-|||+..+++||.||..|+|..-.|...||.|.||...+.+|=...
T Consensus 550 GGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit 597 (971)
T KOG0385|consen 550 GGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT 597 (971)
T ss_pred cccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec
Confidence 999999999999999999999999999999999999987666654433
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=2.5e-25 Score=236.75 Aligned_cols=324 Identities=18% Similarity=0.255 Sum_probs=217.9
Q ss_pred CCcHHHHHHHHHhhcC---C-cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMALKG---R-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~---~-~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
..++.|..++..+++. . .+++.||||+|||.+++.+++..+... .....+++++.|++++.+++++.+.++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3588999999988753 3 688999999999999999888776652 1247789999999999999999999865
Q ss_pred CCCCceEEEEeCCCCCchhHHHH---------------hcCCcEEEcChHHHHHHHhc-cCcc-c--ccccEEEeccchh
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRDL---------------QKGVEIVIATPGRLIDMLES-HNTN-L--RRVTYLVLDEADR 251 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~Ivi~T~~~l~~~l~~-~~~~-l--~~~~~vI~DE~h~ 251 (498)
..........++.... ...... ..-..+.++||......... .... + -..+++||||+|.
T Consensus 271 ~~~~~~~~~~h~~~~~-~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFSVIGKSLHSSSKE-PLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred cccccccccccccccc-hhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 5443332212222211 111100 00123455555444332111 1111 1 1236899999998
Q ss_pred hhcCCcHHHHHHHHHhc-CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCccc--ccceeeeEeecchhhh--HH
Q 010876 252 MLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKA--NHAIRQHVDIVSESQK--YN 326 (498)
Q Consensus 252 ~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k--~~ 326 (498)
+.+......+..++..+ ..+..+|+||||+|+...+.+...+.....+......... ...+.+.. .....+. ..
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~ 428 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKE-RVDVEDGPQEE 428 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccccccc-chhhhhhhhHh
Confidence 88773233444443333 3578899999999999998888887766555443221000 00111110 0011111 12
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHh----cCCCcEEEEeccccccC
Q 010876 327 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK----AGKSPIMTATDVAARGL 402 (498)
Q Consensus 327 ~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~----~g~~~vLvaT~~~~~Gl 402 (498)
...........+.+++|.|||+..|.+++..|+..+.++..+|+.+...+|.+.++.++ .+...|+|||++++.|+
T Consensus 429 ~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 429 LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 23333444556779999999999999999999988778999999999999998887654 57888999999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHHhhcccccCC--CcceEEEEeccccH
Q 010876 403 DVKDVKYVINYDFPGSLEDYVHRIGRTGRAG--AKGTAYTFFTAANA 447 (498)
Q Consensus 403 di~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~ 447 (498)
|+ +.+++|-=-.| +...+||+||++|.| ..|..+++......
T Consensus 509 Di-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 509 DI-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred cc-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 99 58887754445 899999999999999 56777777665543
No 107
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.94 E-value=1.1e-24 Score=226.58 Aligned_cols=317 Identities=21% Similarity=0.258 Sum_probs=223.7
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hcCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASS 193 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~-~~~~~ 193 (498)
..+..+.+.+..+.+++.++++++||||||+..---++....... ....+++..|+|--|..+++++.. .+...
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 456788888999999999999999999999875544555554432 466799999999888778777664 23333
Q ss_pred CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccch-hhhcCCcHHHHHHHHHhcCCCC
Q 010876 194 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQIKKILSQIRPDR 272 (498)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h-~~~~~~~~~~~~~i~~~~~~~~ 272 (498)
+-.|..-..... .......+.+||.+.|++.+.. ...+..+++||+||+| +-.+.+|...+.+.+...+++.
T Consensus 248 g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 248 GEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred CCeeeEEEeeec------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 322221111111 1122368999999999999988 4458899999999999 4445566666666666677999
Q ss_pred cEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCC--------------------cccccceeee------EeecchhhhHH
Q 010876 273 QTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD--------------------LKANHAIRQH------VDIVSESQKYN 326 (498)
Q Consensus 273 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~------~~~~~~~~k~~ 326 (498)
++|+||||+.. +.+...|...|...+-+... .......... +.....+....
T Consensus 321 kvILMSAT~da--e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 321 KVILMSATLDA--ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred eEEEeeeecch--HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 99999999863 33333333333332211100 0000000000 11112223445
Q ss_pred HHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHhhC-------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 010876 327 KLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMD-------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 396 (498)
Q Consensus 327 ~l~~~l~~~~---~~~~vlIf~~s~~~~~~l~~~L~~~-------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 396 (498)
.+.++++.+. ..+.+|||.+...++..+.+.|... .+-+..+|+.++..+++.++.....|..+|+++|+
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 5555554433 3468999999999999999999642 24577899999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEEcCCC------------------CChhHHHHhhcccccCCCcceEEEEecccc
Q 010876 397 VAARGLDVKDVKYVINYDFP------------------GSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 446 (498)
Q Consensus 397 ~~~~Gldi~~v~~VI~~~~p------------------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 446 (498)
+++.+|.|++|-+||+.+.- -|...-.||.|||||. +.|.||.+++...
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 99999999999999965531 2567788999999999 8999999999754
No 108
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.93 E-value=2.5e-25 Score=231.13 Aligned_cols=380 Identities=19% Similarity=0.264 Sum_probs=251.1
Q ss_pred CCCCCCCcccccccccCccccCCCHHHHHHHHHhcCceEe---cCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHH
Q 010876 45 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVE---GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQA 121 (498)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~~---~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~ 121 (498)
..|.+| ++....|+....+......+++.|.....-... +...-++-..|..+...+..+. -.+++.||.
T Consensus 304 vKW~~L-pY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~------g~~LRdyQL 376 (1373)
T KOG0384|consen 304 VKWRGL-PYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKG------GNELRDYQL 376 (1373)
T ss_pred EEecCC-CcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCccccc------cchhhhhhc
Confidence 667777 788888888888888888888887665432211 1122222333444433333322 258999999
Q ss_pred HHHHHhh----cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceE
Q 010876 122 QGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 197 (498)
Q Consensus 122 ~~i~~~l----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~ 197 (498)
+.+++++ .++++|+...+|.|||+. .+..|..+.... .-.|| +|||+|...+.. |..+|..+. .+++
T Consensus 377 eGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~---~~~gp-flvvvplst~~~-W~~ef~~w~---~mn~ 447 (1373)
T KOG0384|consen 377 EGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL---QIHGP-FLVVVPLSTITA-WEREFETWT---DMNV 447 (1373)
T ss_pred ccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh---hccCC-eEEEeehhhhHH-HHHHHHHHh---hhce
Confidence 9999976 478899999999999976 333444444321 12356 688999876654 777788776 5788
Q ss_pred EEEeCCCCCchhHHHHh----c-----CCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhc
Q 010876 198 TCIYGGVPKGPQVRDLQ----K-----GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 268 (498)
Q Consensus 198 ~~~~~~~~~~~~~~~~~----~-----~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~ 268 (498)
++++|....++.++... . ..+++++|++.++.--. .+.--.+.++++||||++.+.. ..+-..+..+
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~~--~~l~~~l~~f 523 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKNDE--SKLYESLNQF 523 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCchH--HHHHHHHHHh
Confidence 89998887766665532 1 36899999998743211 1111245689999999998763 3334445555
Q ss_pred CCCCcEEEEcCCCc-HHHHHHHHHH-hcCCeEEEE--------------------------------cCCCcccccceee
Q 010876 269 RPDRQTLYWSATWP-KEVEHLARQY-LYNPYKVII--------------------------------GSPDLKANHAIRQ 314 (498)
Q Consensus 269 ~~~~~~i~~SAT~~-~~~~~~~~~~-~~~~~~~~~--------------------------------~~~~~~~~~~~~~ 314 (498)
. ..+.+++|.|+- +.+.++..-+ +..|..+.. ...+...+....+
T Consensus 524 ~-~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~ 602 (1373)
T KOG0384|consen 524 K-MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEET 602 (1373)
T ss_pred c-ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcce
Confidence 3 344577788842 2222221110 001100000 0000000000000
Q ss_pred eEe------------------------------------------------------------------------ecchh
Q 010876 315 HVD------------------------------------------------------------------------IVSES 322 (498)
Q Consensus 315 ~~~------------------------------------------------------------------------~~~~~ 322 (498)
.+. .+..+
T Consensus 603 IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sS 682 (1373)
T KOG0384|consen 603 ILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSS 682 (1373)
T ss_pred EEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhc
Confidence 000 00111
Q ss_pred hhHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhc---CCCcEEEEeccc
Q 010876 323 QKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA---GKSPIMTATDVA 398 (498)
Q Consensus 323 ~k~~~l~~~l~~~~~-~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~---g~~~vLvaT~~~ 398 (498)
.|+..|..+|..+.. +++||||.+.+...+.|+++|...+++...|.|.+..+.|+.+++.|++ ..+.+|+||.+.
T Consensus 683 GKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAG 762 (1373)
T KOG0384|consen 683 GKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAG 762 (1373)
T ss_pred CcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccC
Confidence 222223344444433 4799999999999999999999999999999999999999999999985 467799999999
Q ss_pred cccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcc--eEEEEeccc
Q 010876 399 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG--TAYTFFTAA 445 (498)
Q Consensus 399 ~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~ 445 (498)
+-|||+..++.||+||..|+|..-+|...||.|.||+. .+|-|++.+
T Consensus 763 GLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 763 GLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred cccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 99999999999999999999999999999999999985 556667765
No 109
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=4.8e-24 Score=213.02 Aligned_cols=328 Identities=22% Similarity=0.263 Sum_probs=221.2
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.+.+||++++.++. ++...|+-.++|.|||.+ ++..|..+...... -..+|||||. .+..||..++..++
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~----~~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKL----TKPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccc----cCceEEEccH-HHHHHHHHHHHHhC
Confidence 67899999999986 345689999999999966 22233333332111 2349999997 78889999999998
Q ss_pred CCCCceEEEEeCCCCCch-------------hHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc
Q 010876 191 ASSKIKSTCIYGGVPKGP-------------QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 257 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~ 257 (498)
+. .+|..+++..+... ..+.......|+|+|++.+.-. .....-..++|+|+||.|++.+..
T Consensus 279 p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn- 353 (923)
T KOG0387|consen 279 PP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN- 353 (923)
T ss_pred cc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc-
Confidence 76 67777777665211 1111223457999999887322 222334467899999999998874
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCcH-HHHHHH-----------------------------------------------
Q 010876 258 EPQIKKILSQIRPDRQTLYWSATWPK-EVEHLA----------------------------------------------- 289 (498)
Q Consensus 258 ~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~----------------------------------------------- 289 (498)
..+...+..++ ..+.|++|+|+-. .+.++-
T Consensus 354 -s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 354 -SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred -cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 44444555553 5566778888311 111000
Q ss_pred -----HHH-------------hcC-CeEEEE-----------------------------------------cCCCcccc
Q 010876 290 -----RQY-------------LYN-PYKVII-----------------------------------------GSPDLKAN 309 (498)
Q Consensus 290 -----~~~-------------~~~-~~~~~~-----------------------------------------~~~~~~~~ 309 (498)
.-| +.. ...+.. ..+.+...
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 000 000 000000 00000000
Q ss_pred c--ceeee--E-eecchhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHh-hCCCCeEEecCCCCHHHHHHHHH
Q 010876 310 H--AIRQH--V-DIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLR-MDGWPALSIHGDKSQAERDWVLS 382 (498)
Q Consensus 310 ~--~~~~~--~-~~~~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~-~~~~~~~~lh~~~~~~~r~~~~~ 382 (498)
. ...+. + .......|...+..++.... .+.++|+|..++...+.|...|. ..++.+..+.|..+...|..+++
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 0 00000 0 12234567888888887654 45599999999999999999998 68999999999999999999999
Q ss_pred HHhcCCC-c-EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEE--Eeccc---cHHHHHHHHH
Q 010876 383 EFKAGKS-P-IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT--FFTAA---NARFAKELIT 455 (498)
Q Consensus 383 ~f~~g~~-~-vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~---~~~~~~~l~~ 455 (498)
+|+++.. . +|++|.+.+-|+|+..++-||.||+.|+|++-.|..-||.|.||+..+++ +++.. +.-+-+.+.+
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFK 671 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHH
Confidence 9997654 3 57788999999999999999999999999999999999999999865444 45554 3334444444
No 110
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=5e-24 Score=208.62 Aligned_cols=308 Identities=22% Similarity=0.297 Sum_probs=221.6
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH----
Q 010876 112 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST---- 187 (498)
Q Consensus 112 ~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~---- 187 (498)
.....+++-.+.+.++..++.+|+.+.||||||++ +| +++.+..+.. .+.++-+..|+|--|..++..+.
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iP--QyL~EaGytk--~gk~IgcTQPRRVAAmSVAaRVA~EMg 335 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IP--QYLYEAGYTK--GGKKIGCTQPRRVAAMSVAARVAEEMG 335 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--cc--HHHHhccccc--CCceEeecCcchHHHHHHHHHHHHHhC
Confidence 44466778888899999999999999999999986 44 5555544333 24558889999977777665554
Q ss_pred -HhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh-hhcCCcHHHHHHHH
Q 010876 188 -KFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFEPQIKKIL 265 (498)
Q Consensus 188 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~-~~~~~~~~~~~~i~ 265 (498)
+++...++.+.. -+. .....-|-++|.++|+.-+... .+|.++++||+||||. -+..+..-.+-+-+
T Consensus 336 vkLG~eVGYsIRF--Edc--------TSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDI 404 (902)
T KOG0923|consen 336 VKLGHEVGYSIRF--EDC--------TSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDI 404 (902)
T ss_pred cccccccceEEEe--ccc--------cCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHH
Confidence 344444433321 111 1123467799999998876554 4588999999999994 23222222333445
Q ss_pred HhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhc---CCCeEE
Q 010876 266 SQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGSRIL 342 (498)
Q Consensus 266 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~vl 342 (498)
..++++.+++++|||+. .+.+...|-.-|+...-+. ...+.-.+...++.+.++..+..+.++. +.+-+|
T Consensus 405 ar~RpdLKllIsSAT~D--AekFS~fFDdapIF~iPGR-----RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDIL 477 (902)
T KOG0923|consen 405 ARFRPDLKLLISSATMD--AEKFSAFFDDAPIFRIPGR-----RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDIL 477 (902)
T ss_pred HhhCCcceEEeeccccC--HHHHHHhccCCcEEeccCc-----ccceeeecccCCchhHHHHHHhhheeeEeccCCccEE
Confidence 56789999999999985 4555555544455443222 2334445556667677766666555443 445799
Q ss_pred EEeCCcccHHHHHHHHhhC---------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEc
Q 010876 343 IFMDTKKGCDQITRQLRMD---------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 413 (498)
Q Consensus 343 If~~s~~~~~~l~~~L~~~---------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~ 413 (498)
||....++.+...+.|... .+-+..+|+.++++.+..+++--..|..+|++||+++++.+.|+++.+||+-
T Consensus 478 VFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDp 557 (902)
T KOG0923|consen 478 VFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDP 557 (902)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecC
Confidence 9999988877776666432 2447789999999999999999999999999999999999999999999965
Q ss_pred CC------------------CCChhHHHHhhcccccCCCcceEEEEecc
Q 010876 414 DF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTA 444 (498)
Q Consensus 414 ~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 444 (498)
+. |-|.++-.||.|||||.| +|.|+.+++.
T Consensus 558 Gf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 558 GFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred ccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 53 447888899999999995 8999999984
No 111
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.1e-22 Score=208.93 Aligned_cols=289 Identities=25% Similarity=0.342 Sum_probs=196.6
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH
Q 010876 104 VMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 183 (498)
Q Consensus 104 ~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~ 183 (498)
+.+.+++...+.|+..|.--...+..|+++-+.||||.|||+--++..+ ++.. .+.++++|+||+.|+.|++
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl-~~a~-------kgkr~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL-YLAK-------KGKRVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH-HHHh-------cCCeEEEEecCHHHHHHHH
Confidence 3344555555599999999999999999999999999999964333222 2222 2688999999999999999
Q ss_pred HHHHHhcCCCC-ceEEE-EeCCCCCch---hHHHHh-cCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-
Q 010876 184 QESTKFGASSK-IKSTC-IYGGVPKGP---QVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG- 256 (498)
Q Consensus 184 ~~~~~~~~~~~-~~~~~-~~~~~~~~~---~~~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~- 256 (498)
+.+.+|....+ ..+.. .++..+... ....+. .+.+|+|+|.+-|...+..-. -.+|++|++|++|.++..+
T Consensus 143 ~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~--~~kFdfifVDDVDA~Lkask 220 (1187)
T COG1110 143 ERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS--KLKFDFIFVDDVDAILKASK 220 (1187)
T ss_pred HHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc--ccCCCEEEEccHHHHHhccc
Confidence 99999976655 44444 333333322 233343 358999999766655443211 1368999999999766322
Q ss_pred ----------cHH-----------------------HHHHHHHh--------cCCCCcEEEEcCCCcHHH--HHHHHHHh
Q 010876 257 ----------FEP-----------------------QIKKILSQ--------IRPDRQTLYWSATWPKEV--EHLARQYL 293 (498)
Q Consensus 257 ----------~~~-----------------------~~~~i~~~--------~~~~~~~i~~SAT~~~~~--~~~~~~~~ 293 (498)
|.. .+++++.. -.+..+++..|||..+.- ..+.+.++
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 111 11111111 113468899999974432 23444444
Q ss_pred cCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCC---cccHHHHHHHHhhCCCCeEEecC
Q 010876 294 YNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDT---KKGCDQITRQLRMDGWPALSIHG 370 (498)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s---~~~~~~l~~~L~~~~~~~~~lh~ 370 (498)
.- .++..... ..++...+ ....-...+.++++.+.. -.|||++. ++.+++++++|+..|+++..+|+
T Consensus 301 gF----evG~~~~~-LRNIvD~y---~~~~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a 370 (1187)
T COG1110 301 GF----EVGSGGEG-LRNIVDIY---VESESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAELIHA 370 (1187)
T ss_pred CC----ccCccchh-hhheeeee---ccCccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec
Confidence 32 12222111 12222222 222556667777877755 48999999 89999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEe----ccccccCCCCC-CCEEEEcCCCC
Q 010876 371 DKSQAERDWVLSEFKAGKSPIMTAT----DVAARGLDVKD-VKYVINYDFPG 417 (498)
Q Consensus 371 ~~~~~~r~~~~~~f~~g~~~vLvaT----~~~~~Gldi~~-v~~VI~~~~p~ 417 (498)
.. ...++.|..|++++||.+ .++-+|+|+|. +.++|+++.|.
T Consensus 371 ~~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 371 EK-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred cc-----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 42 678999999999999876 57889999997 88999999883
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.92 E-value=3.2e-22 Score=208.39 Aligned_cols=135 Identities=20% Similarity=0.326 Sum_probs=119.3
Q ss_pred hhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 010876 321 ESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 399 (498)
Q Consensus 321 ~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 399 (498)
...++..+.+.+... ..+.++||||++++.++.+++.|...++++..+|+++++.+|..+++.|+.|++.|||||++++
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~ 503 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR 503 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc
Confidence 344566666666654 4566999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcC-----CCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHH
Q 010876 400 RGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 456 (498)
Q Consensus 400 ~Gldi~~v~~VI~~~-----~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 456 (498)
+|+|+|++++||++| .|.+..+|+||+||+||. ..|.+++|++..+..+...+.+.
T Consensus 504 rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 504 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999999998 799999999999999998 68999999998776665555554
No 113
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=5.5e-23 Score=201.75 Aligned_cols=305 Identities=20% Similarity=0.261 Sum_probs=207.8
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hcCCCCc
Q 010876 117 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKI 195 (498)
Q Consensus 117 ~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~-~~~~~~~ 195 (498)
...+.+.+..+..++.++++++||||||+. +.+++....+.. ...+-+..|.|.-|..++..+.. .+..++-
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edGY~~---~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDGYAD---NGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhccccc---CCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 444555566666788899999999999987 445666544332 33677888999888888777663 3333332
Q ss_pred eE--EEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh-hhcCCcHHHHHHHHHhcCCCC
Q 010876 196 KS--TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFEPQIKKILSQIRPDR 272 (498)
Q Consensus 196 ~~--~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~-~~~~~~~~~~~~i~~~~~~~~ 272 (498)
.| ..-+.+.. .....|-++|.+.|+.....+. .|.++++||+||||. -++....--+-+.+..-+.+.
T Consensus 431 ~VGYsIRFEdvT--------~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 431 TVGYSIRFEDVT--------SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred ccceEEEeeecC--------CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 22 11122111 1234688999999887654433 478899999999994 233222222223333335689
Q ss_pred cEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhc---CCCeEEEEeCCcc
Q 010876 273 QTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKK 349 (498)
Q Consensus 273 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~vlIf~~s~~ 349 (498)
++|.+|||+. .+.+...|...|...+-+.. ..+.-.+...+.++.....+...-.+. ..+-+|||....+
T Consensus 502 KliVtSATm~--a~kf~nfFgn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqe 574 (1042)
T KOG0924|consen 502 KLIVTSATMD--AQKFSNFFGNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQE 574 (1042)
T ss_pred eEEEeecccc--HHHHHHHhCCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCc
Confidence 9999999984 56676666656665443332 123333333444555444444332222 3357999999887
Q ss_pred cHHHH----HHHHhhC------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCC----
Q 010876 350 GCDQI----TRQLRMD------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF---- 415 (498)
Q Consensus 350 ~~~~l----~~~L~~~------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~---- 415 (498)
..+-. .+.|.+. ++.+..+++.++..-+.++++.-..|..+++|||+++++.+.||++.+||+.++
T Consensus 575 diE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 575 DIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred chhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 65544 4444332 567899999999999999999888999999999999999999999999997664
Q ss_pred --------------CCChhHHHHhhcccccCCCcceEEEEeccc
Q 010876 416 --------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 445 (498)
Q Consensus 416 --------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 445 (498)
|.|.+.-.||.|||||. .+|.||.++++.
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCC-CCcceeeehhhh
Confidence 55788889999999999 599999999974
No 114
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=5.7e-23 Score=213.95 Aligned_cols=142 Identities=21% Similarity=0.375 Sum_probs=120.2
Q ss_pred cchhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 010876 319 VSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 397 (498)
Q Consensus 319 ~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 397 (498)
....+|...+.+.+... ..+.++||||+|+..++.|++.|...++++..+|+ .+.+|+..+..|..+...|+|||++
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 34567888899888764 34569999999999999999999999999999997 5889999999999999999999999
Q ss_pred ccccCCCC---CCC-----EEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHH----HHHHHHHHHhCC
Q 010876 398 AARGLDVK---DVK-----YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFA----KELITILEEAGQ 462 (498)
Q Consensus 398 ~~~Gldi~---~v~-----~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~----~~l~~~l~~~~~ 462 (498)
++||+||+ .|. +||.+..|.|...|.|++||+||.|.+|.+..|++..|.-+. ..+.+++...+.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~~ 732 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLGH 732 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcCC
Confidence 99999999 454 458999999999999999999999999999999998754321 235555555443
No 115
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.91 E-value=4.5e-22 Score=191.29 Aligned_cols=168 Identities=21% Similarity=0.293 Sum_probs=132.7
Q ss_pred CCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHh-hcCCCeEEEEeCCcc
Q 010876 271 DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKK 349 (498)
Q Consensus 271 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~vlIf~~s~~ 349 (498)
..|+|+.|||+.+.-.+... ...+...+....+ +...+.+.+.....+.|+.-+.. ...+.++||-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGL-----lDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGL-----LDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCC-----CCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 46999999998664332221 1223333333322 22233444555566666665554 556679999999999
Q ss_pred cHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCC-----CChhHHHH
Q 010876 350 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP-----GSLEDYVH 424 (498)
Q Consensus 350 ~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p-----~s~~~~~Q 424 (498)
.|+.|.++|...|+++.++|++...-+|.+++.+++.|.++|||.-+.+-+|+|+|.|.+|..+|.. .|..+.+|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998864 58999999
Q ss_pred hhcccccCCCcceEEEEeccccH
Q 010876 425 RIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 425 r~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
-+|||.|. ..|.++.+.+.-..
T Consensus 538 tIGRAARN-~~GkvIlYAD~iT~ 559 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKITD 559 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhhhH
Confidence 99999997 78999988875433
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.91 E-value=3.6e-22 Score=210.51 Aligned_cols=300 Identities=16% Similarity=0.145 Sum_probs=179.2
Q ss_pred CCcHHHHHHHHHhh----c------CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q 010876 115 EPTPIQAQGWPMAL----K------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 184 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l----~------~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~ 184 (498)
-++++|.+|+..+. . .+..+++++||||||++++..+. .+... ...+++|||+|+.+|..|+.+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~-~l~~~-----~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAAR-KALEL-----LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHH-HHHhh-----cCCCeEEEEECcHHHHHHHHH
Confidence 37889999998764 2 24699999999999988665443 33321 236789999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCCchhHHHHh-cCCcEEEcChHHHHHHHhcc--Ccccccc-cEEEeccchhhhcCCcHHH
Q 010876 185 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESH--NTNLRRV-TYLVLDEADRMLDMGFEPQ 260 (498)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivi~T~~~l~~~l~~~--~~~l~~~-~~vI~DE~h~~~~~~~~~~ 260 (498)
.+.+++.... ....+.......+. ....|+|+|.++|...+... ....... .+||+||||+.....
T Consensus 312 ~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~---- 381 (667)
T TIGR00348 312 EFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE---- 381 (667)
T ss_pred HHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH----
Confidence 9999864211 11111111222222 23689999999997644321 1111111 289999999965433
Q ss_pred HHHHHHhcCCCCcEEEEcCCCcHHHHHH-HHHH---hcCCeEEEEcCCCccccc---cee--------------------
Q 010876 261 IKKILSQIRPDRQTLYWSATWPKEVEHL-ARQY---LYNPYKVIIGSPDLKANH---AIR-------------------- 313 (498)
Q Consensus 261 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~---~~~-------------------- 313 (498)
+...+...-++...++||||+-...... ...+ ..+++... ...+..... .+.
T Consensus 382 ~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y-~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~ 460 (667)
T TIGR00348 382 LAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRY-FITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFD 460 (667)
T ss_pred HHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEe-eHHHHhhcCCeeeEEEEecchhhccChHHHHHHHH
Confidence 3333332335678999999984321110 0111 11111110 000000000 000
Q ss_pred eeEee-----------------------cchhhhHHHHHH----HHHhhcC--CCeEEEEeCCcccHHHHHHHHhhC---
Q 010876 314 QHVDI-----------------------VSESQKYNKLVK----LLEDIMD--GSRILIFMDTKKGCDQITRQLRMD--- 361 (498)
Q Consensus 314 ~~~~~-----------------------~~~~~k~~~l~~----~l~~~~~--~~~vlIf~~s~~~~~~l~~~L~~~--- 361 (498)
..+.. ...+.....+.. .+..... ..+.+|||.++.+|..+++.|.+.
T Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 461 EIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccc
Confidence 00000 000001111111 1111112 368999999999999999988654
Q ss_pred --CCCeEEecCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEeccccccCCCCCCCEEEEcCCCC
Q 010876 362 --GWPALSIHGDKSQA---------------------ERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYDFPG 417 (498)
Q Consensus 362 --~~~~~~lh~~~~~~---------------------~r~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~ 417 (498)
+..+..+++..+.+ ..+.++++|++ +.++|||+++++.+|+|.|.+++++...+..
T Consensus 541 ~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk 620 (667)
T TIGR00348 541 KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK 620 (667)
T ss_pred ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc
Confidence 23445565543322 22468889976 6889999999999999999999988777655
Q ss_pred ChhHHHHhhcccccC
Q 010876 418 SLEDYVHRIGRTGRA 432 (498)
Q Consensus 418 s~~~~~Qr~GR~~R~ 432 (498)
+ ..++|++||+.|.
T Consensus 621 ~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 621 Y-HGLLQAIARTNRI 634 (667)
T ss_pred c-cHHHHHHHHhccc
Confidence 4 5689999999994
No 117
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.1e-21 Score=202.40 Aligned_cols=321 Identities=20% Similarity=0.237 Sum_probs=218.2
Q ss_pred CCCcHHHHHHHHHhhcC----CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 114 FEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~----~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
..+++-|..|+..+.+. ...++.+.||||||.+|+-.+-..+.. |..+|+|+|-.+|-.|+.+.|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHH
Confidence 46888999999998766 469999999999999987755544444 788999999999999999999864
Q ss_pred cCCCCceEEEEeCCCCCchhHHH----HhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcC-----CcHHH
Q 010876 190 GASSKIKSTCIYGGVPKGPQVRD----LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-----GFEPQ 260 (498)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~-----~~~~~ 260 (498)
.. .++.+++++.+..+.... ......|||+|-..+ ...+.++++||+||-|.-.-. .+...
T Consensus 269 Fg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 269 FG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred hC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHH
Confidence 42 567778888776554333 235689999995554 345789999999999954321 12233
Q ss_pred HHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhH-----HHHHHHHHh-
Q 010876 261 IKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY-----NKLVKLLED- 334 (498)
Q Consensus 261 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~- 334 (498)
--.++..-..+.++|+-|||++- +.+....-.....+.+......+.....+.++......+. ..+++.+++
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPSL--ES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPSL--ESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCCH--HHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 33344444468899999999764 4443332222222222221111111222223322222222 344444443
Q ss_pred hcCCCeEEEEeCCcccH------------------------------------------------------------HHH
Q 010876 335 IMDGSRILIFMDTKKGC------------------------------------------------------------DQI 354 (498)
Q Consensus 335 ~~~~~~vlIf~~s~~~~------------------------------------------------------------~~l 354 (498)
+..+.++|+|.|.+..+ +++
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 44567899999887643 666
Q ss_pred HHHHhhC--CCCeEEecCCCCHH--HHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCC------------C
Q 010876 355 TRQLRMD--GWPALSIHGDKSQA--ERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG------------S 418 (498)
Q Consensus 355 ~~~L~~~--~~~~~~lh~~~~~~--~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~------------s 418 (498)
++.|+.. +.++..+.++.+.. .-+..+..|.+|+.+|||.|++++.|.|+|+++.|...|... .
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~ 576 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERT 576 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHH
Confidence 6666543 56677777776543 346789999999999999999999999999999877655432 3
Q ss_pred hhHHHHhhcccccCCCcceEEEEeccccHHHHHHHH
Q 010876 419 LEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 454 (498)
Q Consensus 419 ~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 454 (498)
...+.|-.|||||.+.+|.+++-....+...+..+.
T Consensus 577 fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 577 FQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred HHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 456789999999999999999887766655555444
No 118
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.90 E-value=1e-22 Score=205.96 Aligned_cols=295 Identities=21% Similarity=0.209 Sum_probs=188.4
Q ss_pred CCcHHHHHHHHHhh----cCC-cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 115 EPTPIQAQGWPMAL----KGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l----~~~-~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
.++++|..||..+. .|+ .+++++.||+|||..++- ++..+.+. +..++||+|+.+++|..|.+..+..+
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhc-----chhheeeEEechHHHHHHHHHHHHHh
Confidence 68999999998754 444 499999999999987544 55555543 34678999999999999999999998
Q ss_pred cCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc-----CcccccccEEEeccchhhhcCCcHHHHHHH
Q 010876 190 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----NTNLRRVTYLVLDEADRMLDMGFEPQIKKI 264 (498)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~-----~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i 264 (498)
.+...... .+.+.. ....++|.++|++++...+... .+....+++||+||||+-. ....+.|
T Consensus 239 ~P~~~~~n-~i~~~~--------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~I 305 (875)
T COG4096 239 LPFGTKMN-KIEDKK--------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSSI 305 (875)
T ss_pred CCCcccee-eeeccc--------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHHH
Confidence 76643221 111111 1124799999999998877654 3344568999999999854 3444466
Q ss_pred HHhcCCCCcEEEEcCCCcHHHHHHHHHHh-cCCeEEE------------------E----cCCC-----c----ccc-cc
Q 010876 265 LSQIRPDRQTLYWSATWPKEVEHLARQYL-YNPYKVI------------------I----GSPD-----L----KAN-HA 311 (498)
Q Consensus 265 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~------------------~----~~~~-----~----~~~-~~ 311 (498)
+..+.... +++|||+.+.+..---.++ ..|...+ + .... . ... ..
T Consensus 306 ~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~ 383 (875)
T COG4096 306 LDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEA 383 (875)
T ss_pred HHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccc
Confidence 66653322 4449998664433222222 2332211 0 0000 0 000 00
Q ss_pred e---eeeEeecc----------hhhhHHHHHHHHHhhcC---CCeEEEEeCCcccHHHHHHHHhhC-----CCCeEEecC
Q 010876 312 I---RQHVDIVS----------ESQKYNKLVKLLEDIMD---GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHG 370 (498)
Q Consensus 312 ~---~~~~~~~~----------~~~k~~~l~~~l~~~~~---~~~vlIf~~s~~~~~~l~~~L~~~-----~~~~~~lh~ 370 (498)
+ .+.+...+ .+.....+.+.+..... -+|+||||.+..||+.+...|... +--+..+.+
T Consensus 384 i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~ 463 (875)
T COG4096 384 IDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITG 463 (875)
T ss_pred cCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEec
Confidence 0 00000000 01112223333333111 248999999999999999999764 223566777
Q ss_pred CCCHHHHHHHHHHHhc-CC-CcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC
Q 010876 371 DKSQAERDWVLSEFKA-GK-SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 432 (498)
Q Consensus 371 ~~~~~~r~~~~~~f~~-g~-~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~ 432 (498)
+-.+. +..++.|.. .+ ..|.|+.+++.+|+|+|.|.+++++..-.|...|.||+||.-|.
T Consensus 464 d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 464 DAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred cchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 65433 234455543 33 45777779999999999999999999999999999999999994
No 119
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.89 E-value=2.3e-21 Score=198.85 Aligned_cols=322 Identities=22% Similarity=0.240 Sum_probs=210.0
Q ss_pred CCcHHHHHHHHHhhc---CC-------cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q 010876 115 EPTPIQAQGWPMALK---GR-------DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 184 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~---~~-------~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~ 184 (498)
.++|||++++..+.. |. .+|+...+|+|||+..+. .+.-++.+.+.....-.+.|||+|. .|...|++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~Is-flwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCIS-FIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHH-HHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 689999999998753 22 489999999999998544 4444444322211223668999996 78999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCC-c---hhHHHH---hcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc
Q 010876 185 ESTKFGASSKIKSTCIYGGVPK-G---PQVRDL---QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 257 (498)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~---~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~ 257 (498)
+|.++.....+....+++.... . ..+..+ .-...|++.+++.+.+.... .....+++||+||.|++.+.
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~-- 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS-- 391 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch--
Confidence 9999987666777777776653 0 001111 11246889999998765543 33567899999999998876
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCc-HHHHH-------------------------------------------------
Q 010876 258 EPQIKKILSQIRPDRQTLYWSATWP-KEVEH------------------------------------------------- 287 (498)
Q Consensus 258 ~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~------------------------------------------------- 287 (498)
...+.+.+..+. ..+.|++|+|+= +++.+
T Consensus 392 ~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 392 DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 344555566664 555678899931 11111
Q ss_pred --HHHHH------------hcCCeEEEE--cCCC-------------------------------------c--------
Q 010876 288 --LARQY------------LYNPYKVII--GSPD-------------------------------------L-------- 306 (498)
Q Consensus 288 --~~~~~------------~~~~~~~~~--~~~~-------------------------------------~-------- 306 (498)
+...+ +.-...+.+ .... +
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 11111 000000000 0000 0
Q ss_pred ----ccc-------cceeeeEeecchhhhHHHHHHHHHhhcCC--CeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010876 307 ----KAN-------HAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 373 (498)
Q Consensus 307 ----~~~-------~~~~~~~~~~~~~~k~~~l~~~l~~~~~~--~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 373 (498)
... ..............|+..|..++...... .++++..|.+...+.+....+-.|+.+..+||.++
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 000 00000000011234555555555333221 24555556666667777766777999999999999
Q ss_pred HHHHHHHHHHHhcCCC--c-EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEec
Q 010876 374 QAERDWVLSEFKAGKS--P-IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 443 (498)
Q Consensus 374 ~~~r~~~~~~f~~g~~--~-vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 443 (498)
..+|+.+++.|++..- . +|.+|.+.+.||++-+++.||.||.+|+|+.-.|.+.|+.|.||+-.||+|-.
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrL 703 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRL 703 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEe
Confidence 9999999999996433 3 55677899999999999999999999999999999999999999998887643
No 120
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.89 E-value=7.4e-21 Score=199.85 Aligned_cols=147 Identities=19% Similarity=0.304 Sum_probs=127.2
Q ss_pred hhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 010876 322 SQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 400 (498)
Q Consensus 322 ~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 400 (498)
..+...+++.|... ..+.++||||+++..++.+++.|...++++..+|+++++.+|..+++.|+.|++.|||||+++++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 34456666666554 34668999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCC-----CCChhHHHHhhcccccCCCcceEEEEecc---------ccHHHHHHHHHHHHHhCCCCCH
Q 010876 401 GLDVKDVKYVINYDF-----PGSLEDYVHRIGRTGRAGAKGTAYTFFTA---------ANARFAKELITILEEAGQKVSP 466 (498)
Q Consensus 401 Gldi~~v~~VI~~~~-----p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~---------~~~~~~~~l~~~l~~~~~~~~~ 466 (498)
|+|+|++++||++|. |.+...|+||+||+||. ..|.+++|++. .+....+++..........+|.
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 999999999999885 78999999999999996 78999999984 3556667777777777777777
Q ss_pred HHH
Q 010876 467 ELA 469 (498)
Q Consensus 467 ~l~ 469 (498)
...
T Consensus 588 ~~~ 590 (652)
T PRK05298 588 TIK 590 (652)
T ss_pred hHH
Confidence 663
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.89 E-value=1.2e-20 Score=205.08 Aligned_cols=346 Identities=19% Similarity=0.233 Sum_probs=212.8
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHH----HhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 010876 101 PDYVMQEISKAGFFEPTPIQAQGWP----MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 176 (498)
Q Consensus 101 ~~~~~~~l~~~~~~~~~~~Q~~~i~----~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~ 176 (498)
++.+.+.+...|| ++++.|.+.+. .+..++++++.||||+|||++|++|++.+... +.+++|.+||+
T Consensus 232 ~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~--------~~~vvi~t~t~ 302 (850)
T TIGR01407 232 SSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT--------EKPVVISTNTK 302 (850)
T ss_pred cHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC--------CCeEEEEeCcH
Confidence 3456666666676 58999998666 44567889999999999999999999887652 45799999999
Q ss_pred HHHHHHHH-HHHHhcCCC--CceEEEEeCCCCC---------------chh-----------------------------
Q 010876 177 ELAVQIQQ-ESTKFGASS--KIKSTCIYGGVPK---------------GPQ----------------------------- 209 (498)
Q Consensus 177 ~La~q~~~-~~~~~~~~~--~~~~~~~~~~~~~---------------~~~----------------------------- 209 (498)
+|..|+.. .+..+.... .++++.+.|.... ...
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999865 444443322 2555555544321 000
Q ss_pred ---H------------------------HHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC------
Q 010876 210 ---V------------------------RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG------ 256 (498)
Q Consensus 210 ---~------------------------~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~------ 256 (498)
+ +.....++|||++...|.+.+......+....++||||||++.+..
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcc
Confidence 0 1111235899999998877765443335667899999999865210
Q ss_pred -c-----HHH----------------------------------------------------------------HHHHHH
Q 010876 257 -F-----EPQ----------------------------------------------------------------IKKILS 266 (498)
Q Consensus 257 -~-----~~~----------------------------------------------------------------~~~i~~ 266 (498)
+ ... +...+.
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 0 000 000000
Q ss_pred h---------------------c---------------------------CCCCcEEEEcCCCcH--HHHHHHHHHhcCC
Q 010876 267 Q---------------------I---------------------------RPDRQTLYWSATWPK--EVEHLARQYLYNP 296 (498)
Q Consensus 267 ~---------------------~---------------------------~~~~~~i~~SAT~~~--~~~~~~~~~~~~~ 296 (498)
. . +....+|++|||+.. ....+.+.+..+.
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 0 0 012467899999863 2333333332222
Q ss_pred eE-EEE-cCCCcccccceeeeEe--e-----cchhhhHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhh----C
Q 010876 297 YK-VII-GSPDLKANHAIRQHVD--I-----VSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRM----D 361 (498)
Q Consensus 297 ~~-~~~-~~~~~~~~~~~~~~~~--~-----~~~~~k~~~l~~~l~~~~--~~~~vlIf~~s~~~~~~l~~~L~~----~ 361 (498)
.. ..+ .++. ....+..-++. . ...+.-...+.+.+.++. ..+++|||++|....+.++..|.. .
T Consensus 623 ~~~~~~~~spf-~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~ 701 (850)
T TIGR01407 623 VHFNTIEPTPL-NYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFE 701 (850)
T ss_pred cccceecCCCC-CHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcccc
Confidence 11 111 1111 10111111110 0 111222334444444321 346899999999999999999975 2
Q ss_pred CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCC--EEEEcCCCC----------------------
Q 010876 362 GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK--YVINYDFPG---------------------- 417 (498)
Q Consensus 362 ~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~--~VI~~~~p~---------------------- 417 (498)
+++ .+..+.. ..|..+++.|++++..||++|+.+.+|||+|+.. +||...+|.
T Consensus 702 ~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~ 778 (850)
T TIGR01407 702 GYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNP 778 (850)
T ss_pred Cce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 333 3333333 5788999999999999999999999999999865 566666654
Q ss_pred --------ChhHHHHhhcccccCCCcceEEEEeccc--cHHHHHHHHHHHHH
Q 010876 418 --------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--NARFAKELITILEE 459 (498)
Q Consensus 418 --------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~--~~~~~~~l~~~l~~ 459 (498)
....+.|.+||+-|...+.-++++++.. ...+-..+.+.|..
T Consensus 779 f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 779 FYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPE 830 (850)
T ss_pred hHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCC
Confidence 1234569999999997775556666654 45566677766654
No 122
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=7.8e-21 Score=192.90 Aligned_cols=314 Identities=20% Similarity=0.196 Sum_probs=220.8
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.|++.|.-+.-.+++| -|+.+.||.|||+++.+|++...+. |..|.+++|+..||.|-++++..+...++
T Consensus 78 r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~LG 147 (764)
T PRK12326 78 RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEALG 147 (764)
T ss_pred CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 7899999998888876 5789999999999999998877765 67799999999999999999999999999
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHH-HHHhc------cCcccccccEEEeccchhhhcC------------
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLES------HNTNLRRVTYLVLDEADRMLDM------------ 255 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~-~~l~~------~~~~l~~~~~vI~DE~h~~~~~------------ 255 (498)
+.+.++.++.+.... .-.-.++|+++|...|- ++|.. .......+.+.|+||+|.++=.
T Consensus 148 Lsvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~ 225 (764)
T PRK12326 148 LTVGWITEESTPEER--RAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGST 225 (764)
T ss_pred CEEEEECCCCCHHHH--HHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCC
Confidence 999999887654332 23336899999986642 22221 1223456889999999975500
Q ss_pred ---CcHHHHHHHHHhcCC--------------------------------------------------------------
Q 010876 256 ---GFEPQIKKILSQIRP-------------------------------------------------------------- 270 (498)
Q Consensus 256 ---~~~~~~~~i~~~~~~-------------------------------------------------------------- 270 (498)
.....+..++..+.+
T Consensus 226 ~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYi 305 (764)
T PRK12326 226 PGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYI 305 (764)
T ss_pred cchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 001111111111110
Q ss_pred --------------------------------------------------------CCcEEEEcCCCcHHHHHHHHHHhc
Q 010876 271 --------------------------------------------------------DRQTLYWSATWPKEVEHLARQYLY 294 (498)
Q Consensus 271 --------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~ 294 (498)
-..+.+||+|...+..++.+.|..
T Consensus 306 V~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l 385 (764)
T PRK12326 306 VRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDL 385 (764)
T ss_pred EECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCC
Confidence 024566777766555555554443
Q ss_pred CCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010876 295 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 373 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 373 (498)
+... +.... ................+|...+.+.+.+. ..+.||||.|.|+...+.++..|.+.+++..++++.-.
T Consensus 386 ~Vv~--IPtnk-p~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 386 GVSV--IPPNK-PNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred cEEE--CCCCC-CceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 3221 11111 11111111223345667888888777654 45679999999999999999999999999999998744
Q ss_pred HHHHHHHHHHHhcCC-CcEEEEeccccccCCCCCC---------------CEEEEcCCCCChhHHHHhhcccccCCCcce
Q 010876 374 QAERDWVLSEFKAGK-SPIMTATDVAARGLDVKDV---------------KYVINYDFPGSLEDYVHRIGRTGRAGAKGT 437 (498)
Q Consensus 374 ~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldi~~v---------------~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~ 437 (498)
..+-+.+- +.|+ -.|.|||++++||.||.-- =+||-...+.|...-.|-.||+||.|.+|.
T Consensus 463 ~~EA~IIa---~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 AEEARIIA---EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred HhHHHHHH---hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 33322222 2343 4599999999999998621 278889999999999999999999999999
Q ss_pred EEEEecccc
Q 010876 438 AYTFFTAAN 446 (498)
Q Consensus 438 ~~~~~~~~~ 446 (498)
+..|++-+|
T Consensus 540 s~f~lSleD 548 (764)
T PRK12326 540 SVFFVSLED 548 (764)
T ss_pred eeEEEEcch
Confidence 999988765
No 123
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.89 E-value=1.9e-21 Score=201.81 Aligned_cols=323 Identities=20% Similarity=0.210 Sum_probs=216.5
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCchHHHHHHHHHHHHHhcCC-CCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 115 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQP-FLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
.++.||++.++++. .+-+.|+|.++|.|||++.+-.+.....+.+ ....-...-.|||||. .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 57889999999854 3457999999999999886544433333321 1111112237999997 8999999999999
Q ss_pred cCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcC
Q 010876 190 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 269 (498)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~ 269 (498)
.+. +++....|.-..+...+.--+..+|+|++|+.+.+-+.. +.-.++.|.|+||-|.+.+. ...+.+.++.++
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 987 666666665555444555455679999999988642221 11135679999999998876 556666666665
Q ss_pred CCCcEEEEcCCCc-HHHHH-------------------------------------------------------------
Q 010876 270 PDRQTLYWSATWP-KEVEH------------------------------------------------------------- 287 (498)
Q Consensus 270 ~~~~~i~~SAT~~-~~~~~------------------------------------------------------------- 287 (498)
. .+.+.+|+|+- +++.+
T Consensus 1128 a-~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 A-NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred h-cceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3 44577889831 00000
Q ss_pred ---------------------------HHHHHhcC---CeEEEEcCCCccccc---ce---eee----------------
Q 010876 288 ---------------------------LARQYLYN---PYKVIIGSPDLKANH---AI---RQH---------------- 315 (498)
Q Consensus 288 ---------------------------~~~~~~~~---~~~~~~~~~~~~~~~---~~---~~~---------------- 315 (498)
+.+.+-.. ...-.+......... .+ -|+
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 00000000 000000000000000 00 000
Q ss_pred ----------------EeecchhhhHHHHHHHHHhhc---------------CCCeEEEEeCCcccHHHHHHHHhhCC--
Q 010876 316 ----------------VDIVSESQKYNKLVKLLEDIM---------------DGSRILIFMDTKKGCDQITRQLRMDG-- 362 (498)
Q Consensus 316 ----------------~~~~~~~~k~~~l~~~l~~~~---------------~~~~vlIf~~s~~~~~~l~~~L~~~~-- 362 (498)
...+....|...|.++|.+.. .++++||||+-+...+.+.+.|-+.-
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 000123456777777776543 23589999999999999998886643
Q ss_pred -CCeEEecCCCCHHHHHHHHHHHhcC-CCcEEE-EeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceE-
Q 010876 363 -WPALSIHGDKSQAERDWVLSEFKAG-KSPIMT-ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA- 438 (498)
Q Consensus 363 -~~~~~lh~~~~~~~r~~~~~~f~~g-~~~vLv-aT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~- 438 (498)
+....+.|..++.+|.++.++|+++ .++||+ +|.+.+-|+|+..++.||+++-.|++..-+|.+.||.|.||+..+
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 3355889999999999999999988 888875 569999999999999999999999999999999999999998654
Q ss_pred -EEEeccc
Q 010876 439 -YTFFTAA 445 (498)
Q Consensus 439 -~~~~~~~ 445 (498)
|.+++..
T Consensus 1447 VyRlItrG 1454 (1549)
T KOG0392|consen 1447 VYRLITRG 1454 (1549)
T ss_pred eeeehhcc
Confidence 4455554
No 124
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.89 E-value=1.4e-21 Score=195.27 Aligned_cols=319 Identities=21% Similarity=0.268 Sum_probs=219.4
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
++-+||.-.++++. .+-+.|+..++|.|||.. +++.+..+.... ..||+ |||||...|-+ |..++.+|+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g----~~gpH-LVVvPsSTleN-WlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG----NPGPH-LVVVPSSTLEN-WLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC----CCCCc-EEEecchhHHH-HHHHHHHhC
Confidence 58899999999864 344689999999999976 444566666532 24664 88899977755 788899998
Q ss_pred CCCCceEEEEeCCCCCchhHHHHh----cCCcEEEcChHHHHHHHh-ccCcccccccEEEeccchhhhcCCcHHHHHHHH
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 265 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ivi~T~~~l~~~l~-~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~ 265 (498)
+. ++|...||....+..++... ...+|+++|+..+..--. +..+.-.+++++|+||+|.+.++. ...+..++
T Consensus 472 Ps--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM 548 (941)
T KOG0389|consen 472 PS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLM 548 (941)
T ss_pred Cc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhc
Confidence 76 77888888876555544432 258999999866532111 111223467899999999999876 55555554
Q ss_pred HhcCCCCcEEEEcCCCcH-HHHHH---HHH--------------------------------------------------
Q 010876 266 SQIRPDRQTLYWSATWPK-EVEHL---ARQ-------------------------------------------------- 291 (498)
Q Consensus 266 ~~~~~~~~~i~~SAT~~~-~~~~~---~~~-------------------------------------------------- 291 (498)
.- +..+.+++|+|+-. ++.++ +..
T Consensus 549 ~I--~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 549 SI--NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred cc--cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 32 35566888888311 00000 000
Q ss_pred -----Hh---cCCe-EEEE---c-----------------CCCcccc-----------------cce--eeeE-------
Q 010876 292 -----YL---YNPY-KVII---G-----------------SPDLKAN-----------------HAI--RQHV------- 316 (498)
Q Consensus 292 -----~~---~~~~-~~~~---~-----------------~~~~~~~-----------------~~~--~~~~------- 316 (498)
.+ .... .+.. . ......+ +.+ ..++
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 00 0000 0000 0 0000000 000 0000
Q ss_pred ------------------------------------------------eecchhhhHHHHHHHHHhhcC-CCeEEEEeCC
Q 010876 317 ------------------------------------------------DIVSESQKYNKLVKLLEDIMD-GSRILIFMDT 347 (498)
Q Consensus 317 ------------------------------------------------~~~~~~~k~~~l~~~l~~~~~-~~~vlIf~~s 347 (498)
..+-.+.|...|..+|.+... +.+||||...
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 000134677777777777654 4699999999
Q ss_pred cccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHh
Q 010876 348 KKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK--SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHR 425 (498)
Q Consensus 348 ~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~--~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr 425 (498)
-...+.|...|...++....+.|...-.+|+.+++.|...+ .-+|++|.+.+-|||+..+++||.+|...+|-+-.|.
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QA 866 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQA 866 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchh
Confidence 99999999999999999999999999999999999998643 3467899999999999999999999999999999999
Q ss_pred hcccccCCCcceEEE--Eeccc
Q 010876 426 IGRTGRAGAKGTAYT--FFTAA 445 (498)
Q Consensus 426 ~GR~~R~g~~g~~~~--~~~~~ 445 (498)
-.||.|.|+...+.+ +++.+
T Consensus 867 EDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 867 EDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred HHHHHhhCCcceeEEEEEEecC
Confidence 999999999865554 45554
No 125
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6e-21 Score=190.57 Aligned_cols=302 Identities=21% Similarity=0.298 Sum_probs=188.1
Q ss_pred HHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCC--CCCCCEEEEEcCcHHHHHHHH----HHHHHhcCCCCc
Q 010876 122 QGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPIVLVLAPTRELAVQIQ----QESTKFGASSKI 195 (498)
Q Consensus 122 ~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~vlvl~P~~~La~q~~----~~~~~~~~~~~~ 195 (498)
+.+..|..+.-+|+|+.||||||++ +| +++.+..+.. ...+..+=|..|+|--|..++ .++..+++..+
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVs- 337 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQ--VP--QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVS- 337 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCcccc--ch--HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCcccee-
Confidence 4445555566799999999999986 33 4444433222 122346778889985554444 44444443322
Q ss_pred eEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhh-cC----CcHHHHHHHHHhcC-
Q 010876 196 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DM----GFEPQIKKILSQIR- 269 (498)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~-~~----~~~~~~~~i~~~~~- 269 (498)
...-+.+.. .....|.++|.+.|+.-++++.. |..++.||+||||.-. +. +....+-.+.....
T Consensus 338 -YqIRfd~ti--------~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 338 -YQIRFDGTI--------GEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred -EEEEecccc--------CCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhh
Confidence 333343332 23468999999999998887654 8899999999999421 11 11222222222222
Q ss_pred -----CCCcEEEEcCCCcHHHHHHH--HHHhcC-CeEEEEcCCCcccccceeeeEeecchhhhHHHHHHH---HHhhcCC
Q 010876 270 -----PDRQTLYWSATWPKEVEHLA--RQYLYN-PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL---LEDIMDG 338 (498)
Q Consensus 270 -----~~~~~i~~SAT~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~---l~~~~~~ 338 (498)
+..++|+||||+. +.++. +.++.. |-.+.+.... ..+.-.+......+.+....+- +.+..+.
T Consensus 408 e~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQ----fPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQ----FPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred hhcccCceeEEEEeeeEE--ecccccCceecCCCCceeeeeccc----CceEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 2578899999984 33333 122222 2222222221 1222222222222333222221 2223355
Q ss_pred CeEEEEeCCcccHHHHHHHHhhCC--------------------------------------------------------
Q 010876 339 SRILIFMDTKKGCDQITRQLRMDG-------------------------------------------------------- 362 (498)
Q Consensus 339 ~~vlIf~~s~~~~~~l~~~L~~~~-------------------------------------------------------- 362 (498)
+-+|||+-...+++.|++.|++..
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 689999999999999999997641
Q ss_pred -------------------------------------------CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 010876 363 -------------------------------------------WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 399 (498)
Q Consensus 363 -------------------------------------------~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 399 (498)
+-+..+++-++.+.+..+++.-..|..-++|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 0111345566777777777777788888999999999
Q ss_pred ccCCCCCCCEEEEcCCCC------------------ChhHHHHhhcccccCCCcceEEEEeccc
Q 010876 400 RGLDVKDVKYVINYDFPG------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA 445 (498)
Q Consensus 400 ~Gldi~~v~~VI~~~~p~------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 445 (498)
+.+.||++.+||+.+.-. |.++--||.|||||.| .|.||.+|+..
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999999766422 5566679999999994 89999998753
No 126
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=2.2e-21 Score=184.06 Aligned_cols=322 Identities=19% Similarity=0.279 Sum_probs=213.0
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 171 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlv 171 (498)
+..|...++++...+.+++..-...+..+.+.+..+..++-++++++||||||...--..+...... ...|.+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccceee
Confidence 7789999999999999998776677888888888888999999999999999976333333333322 234888
Q ss_pred EcCcHHHHHHHHHHHHH-----hcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEe
Q 010876 172 LAPTRELAVQIQQESTK-----FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 246 (498)
Q Consensus 172 l~P~~~La~q~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~ 246 (498)
..|.|--|.+++..... ++.+.+..+. +.+- .....-+-+||.++|++....... +.++++||+
T Consensus 97 TQprrvaamsva~RVadEMDv~lG~EVGysIr--fEdC--------~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiL 165 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVADEMDVTLGEEVGYSIR--FEDC--------TSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIIL 165 (699)
T ss_pred cCchHHHHHHHHHHHHHHhccccchhcccccc--cccc--------CChhHHHHHhcchHHHHHHhhCcc-cccccEEEe
Confidence 89999777777665543 3333332211 0000 011122336888888776665543 789999999
Q ss_pred ccchh-hhcCC-cHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhh
Q 010876 247 DEADR-MLDMG-FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQK 324 (498)
Q Consensus 247 DE~h~-~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 324 (498)
||||. -+..+ ..-.++.++.. +++.++|.||||+.. .+ .+.|+.+.-.+.+.. ...++..+..-.+.+.
T Consensus 166 DeahERtlATDiLmGllk~v~~~-rpdLk~vvmSatl~a--~K-fq~yf~n~Pll~vpg-----~~PvEi~Yt~e~erDy 236 (699)
T KOG0925|consen 166 DEAHERTLATDILMGLLKEVVRN-RPDLKLVVMSATLDA--EK-FQRYFGNAPLLAVPG-----THPVEIFYTPEPERDY 236 (699)
T ss_pred chhhhhhHHHHHHHHHHHHHHhh-CCCceEEEeecccch--HH-HHHHhCCCCeeecCC-----CCceEEEecCCCChhH
Confidence 99994 22211 12233444433 479999999999732 33 344555544443322 1222223333334444
Q ss_pred HHHHHHHHHhh---cCCCeEEEEeCCcccHHHHHHHHhhC---------CCCeEEecCCCCHHHHHHHHHHHh---cC--
Q 010876 325 YNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMD---------GWPALSIHGDKSQAERDWVLSEFK---AG-- 387 (498)
Q Consensus 325 ~~~l~~~l~~~---~~~~~vlIf~~s~~~~~~l~~~L~~~---------~~~~~~lh~~~~~~~r~~~~~~f~---~g-- 387 (498)
++..++.+-++ ...+-+|||....++.+..++.+... .+++..+| +.++..+++-.. +|
T Consensus 237 lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~ 312 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAY 312 (699)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCc
Confidence 55544443332 23457999999999988888887632 24566777 444444443322 12
Q ss_pred CCcEEEEeccccccCCCCCCCEEEEcCC------------------CCChhHHHHhhcccccCCCcceEEEEeccc
Q 010876 388 KSPIMTATDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 445 (498)
Q Consensus 388 ~~~vLvaT~~~~~Gldi~~v~~VI~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 445 (498)
..+|+|+|++++..+.++.+.+||+.+. |.|..+-.||.||+||. ++|.|+.++++.
T Consensus 313 ~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred cceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 4679999999999999999999996553 66889999999999998 899999999975
No 127
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=8.6e-22 Score=200.32 Aligned_cols=158 Identities=20% Similarity=0.230 Sum_probs=115.9
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc-CCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG-ASS 193 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~-~~~ 193 (498)
.|-.||.+.+..+-.+.+.+++|||.+|||++.-..+=..+... +...||+++|+++|++|+...+.... ...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes------D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES------DSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc------CCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 68889999999999999999999999999987555444444332 46679999999999999988777543 222
Q ss_pred CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc---cCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCC
Q 010876 194 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES---HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 270 (498)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~---~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~ 270 (498)
-.+.+.+.|......++. .-.|.|+|+-|+.+..++.. ......++.++|+||+|.+.++.-...++.++..+
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 233344444333222221 12489999999999888776 34557889999999999999877566666666555
Q ss_pred CCcEEEEcCCCc
Q 010876 271 DRQTLYWSATWP 282 (498)
Q Consensus 271 ~~~~i~~SAT~~ 282 (498)
.+.++.+|||..
T Consensus 661 ~CP~L~LSATig 672 (1330)
T KOG0949|consen 661 PCPFLVLSATIG 672 (1330)
T ss_pred CCCeeEEecccC
Confidence 467899999964
No 128
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.87 E-value=1.9e-20 Score=169.54 Aligned_cols=186 Identities=44% Similarity=0.639 Sum_probs=153.8
Q ss_pred CCCCCCcHHHHHHHHHhhcC-CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 111 AGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 111 ~~~~~~~~~Q~~~i~~~l~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
.++..|+++|.++++.++.. +.+++.++||+|||.+++.+++..+.... ..+++|++|+++++.|+.+.+.++
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45678999999999999988 99999999999999988888887766532 456999999999999999999988
Q ss_pred cCCCCceEEEEeCCCCCchhHHHHhcCC-cEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhc
Q 010876 190 GASSKIKSTCIYGGVPKGPQVRDLQKGV-EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 268 (498)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~ 268 (498)
............++.........+..+. +++++|++.+.+.+.........++++|+||+|.+....+...+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 7665534555555555455555556665 999999999999988876667789999999999999766788888898888
Q ss_pred CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEc
Q 010876 269 RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 302 (498)
Q Consensus 269 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 302 (498)
.+..+++++|||+++........+......+...
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 8899999999999998988888888766655444
No 129
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=3.5e-20 Score=192.73 Aligned_cols=315 Identities=18% Similarity=0.201 Sum_probs=215.0
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.|++.|.-+- +.-++.-|+.+.||+|||+++.+|++..... |..|.+++|+..||.|-++++..+....+
T Consensus 82 ~~ydVQliGg--~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~lG 151 (913)
T PRK13103 82 RHFDVQLIGG--MTLHEGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFLG 151 (913)
T ss_pred CcchhHHHhh--hHhccCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 6666666553 3335668999999999999999999877765 67799999999999999999999999999
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHH-HHHHhcc------CcccccccEEEeccchhhhc-C-----------
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRMLD-M----------- 255 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-~~~l~~~------~~~l~~~~~vI~DE~h~~~~-~----------- 255 (498)
+.+.++.++.+....... -.++|+++|..-| .|+|... ......+.++|+||+|.++= .
T Consensus 152 l~v~~i~~~~~~~err~~--Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~ 229 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRAA--YAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQA 229 (913)
T ss_pred CEEEEECCCCCHHHHHHH--hcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCC
Confidence 999999887654433332 3489999998775 2333322 11247889999999997650 0
Q ss_pred ----CcHHHHHHHHHhcCC-------------------------------------------------------------
Q 010876 256 ----GFEPQIKKILSQIRP------------------------------------------------------------- 270 (498)
Q Consensus 256 ----~~~~~~~~i~~~~~~------------------------------------------------------------- 270 (498)
.....+..++..+..
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~ 309 (913)
T PRK13103 230 EDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTH 309 (913)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHH
Confidence 000111111111100
Q ss_pred --------------------------------------------------------------------------CCcEEE
Q 010876 271 --------------------------------------------------------------------------DRQTLY 276 (498)
Q Consensus 271 --------------------------------------------------------------------------~~~~i~ 276 (498)
-.++.+
T Consensus 310 i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsG 389 (913)
T PRK13103 310 VYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSG 389 (913)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhcc
Confidence 013345
Q ss_pred EcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHH
Q 010876 277 WSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQIT 355 (498)
Q Consensus 277 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~ 355 (498)
||+|...+..++...|..+.+.+- ... .....-..........+|+..+++-+.+.. .+.||||-+.|+...+.|+
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IP--Tnk-P~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls 466 (913)
T PRK13103 390 MTGTADTEAFEFRQIYGLDVVVIP--PNK-PLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMS 466 (913)
T ss_pred CCCCCHHHHHHHHHHhCCCEEECC--CCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHH
Confidence 555554444444333332222211 111 111111112233456778888888777654 4669999999999999999
Q ss_pred HHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEeccccccCCCC-----------------------------
Q 010876 356 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIMTATDVAARGLDVK----------------------------- 405 (498)
Q Consensus 356 ~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gldi~----------------------------- 405 (498)
..|+..+++..+++......+-+.+- +.| .-.|.|||++++||.||.
T Consensus 467 ~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (913)
T PRK13103 467 NLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQK 543 (913)
T ss_pred HHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 99999999998888864433322222 345 445999999999999994
Q ss_pred --------CCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 406 --------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 406 --------~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
+==+||-...+.|..--.|-.||+||.|.+|.+..|++-.|.
T Consensus 544 ~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 544 RHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 112788888999999999999999999999999999887654
No 130
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=4.9e-21 Score=182.26 Aligned_cols=311 Identities=19% Similarity=0.216 Sum_probs=207.3
Q ss_pred CCCcHHHHHHHHHhhcC---CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 114 FEPTPIQAQGWPMALKG---RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~---~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
..++|||.+++..+.-+ ++.|++.|+|+|||++-+-++ ..+ .+.+||||.+..-++||..++..|.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 57999999999998743 468999999999998744432 222 3459999999999999999999987
Q ss_pred CCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc--------CcccccccEEEeccchhhhcCCcHHHHH
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--------NTNLRRVTYLVLDEADRMLDMGFEPQIK 262 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~--------~~~l~~~~~vI~DE~h~~~~~~~~~~~~ 262 (498)
-..+-.+..++.+.. .....++.|+|+|+.++..--.+. .+.-+.++++|+||+|.+...-|+..+.
T Consensus 370 ti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 555544554444332 224557899999987653321110 1113457899999999988776776666
Q ss_pred HHHHhcCCCCcEEEEcCCCcHHHHHHHH-HHhcCCeEEEEcCCCcccc--------------------------cceeee
Q 010876 263 KILSQIRPDRQTLYWSATWPKEVEHLAR-QYLYNPYKVIIGSPDLKAN--------------------------HAIRQH 315 (498)
Q Consensus 263 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 315 (498)
-+-... .+++|||+-.+-..+.. .|+..|......-.++... ...+..
T Consensus 445 iv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 555444 38999998554333221 1121221111000000000 001111
Q ss_pred EeecchhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHh-cCCCcEEE
Q 010876 316 VDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK-AGKSPIMT 393 (498)
Q Consensus 316 ~~~~~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~-~g~~~vLv 393 (498)
...+-...|+....-+++-+. .+.++|||..+.-....++-.|.+. .|+|..++.+|..+++.|+ +..++-++
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~Kp-----fIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKP-----FIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCCc-----eEECCCchhHHHHHHHhcccCCccceEE
Confidence 112233455655555555432 4569999999988888887777654 7899999999999999999 56788899
Q ss_pred EeccccccCCCCCCCEEEEcCCC-CChhHHHHhhcccccCCC------cceEEEEeccccHHHH
Q 010876 394 ATDVAARGLDVKDVKYVINYDFP-GSLEDYVHRIGRTGRAGA------KGTAYTFFTAANARFA 450 (498)
Q Consensus 394 aT~~~~~Gldi~~v~~VI~~~~p-~s~~~~~Qr~GR~~R~g~------~g~~~~~~~~~~~~~~ 450 (498)
-..+..+.+|+|.++++|....- .|-.+-.||+||..|+.+ ....|.+++.+..++.
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 99999999999999999987754 467889999999999642 1344555655544443
No 131
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.86 E-value=4.2e-20 Score=175.76 Aligned_cols=313 Identities=16% Similarity=0.197 Sum_probs=213.3
Q ss_pred CCCcHHHHHHHHHhhc-CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 114 FEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~-~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
..+-|+|.+.+..++. |..+++..++|.|||+.++..+-.+..+ .| .|||||. +|-..|.+.+.+|.+.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE--------wp-lliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE--------WP-LLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc--------Cc-EEEEecH-HHhHHHHHHHHHhccc
Confidence 3678999999998774 6679999999999999976644444333 33 7999997 6778899999999866
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCC
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 272 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~ 272 (498)
... +.++.++.... ..+.....|.|.+++.+..+-.. ..-..+.+||+||+|.+.+.. ....+.++..+....
T Consensus 267 ~~p-i~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAK 339 (689)
T ss_pred ccc-eEEEecccCCc---cccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhh
Confidence 543 44444443321 12334568999999988554221 122357899999999988765 555677777777788
Q ss_pred cEEEEcCCC----cHH---------------HHHHHHHHhcCC-eEEEEcCCCc-------------------------c
Q 010876 273 QTLYWSATW----PKE---------------VEHLARQYLYNP-YKVIIGSPDL-------------------------K 307 (498)
Q Consensus 273 ~~i~~SAT~----~~~---------------~~~~~~~~~~~~-~~~~~~~~~~-------------------------~ 307 (498)
++|++|+|+ |.+ ..++...|+.-. ..+..+.... .
T Consensus 340 hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 340 HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999995 221 122233332111 1111000000 0
Q ss_pred cccceeeeEeecc-------------------------------------hhhhHHHHHHHHHh-----hcCCCeEEEEe
Q 010876 308 ANHAIRQHVDIVS-------------------------------------ESQKYNKLVKLLED-----IMDGSRILIFM 345 (498)
Q Consensus 308 ~~~~~~~~~~~~~-------------------------------------~~~k~~~l~~~l~~-----~~~~~~vlIf~ 345 (498)
.+....+.+..+. ...|...+.+.|.. .....|.+|||
T Consensus 420 LPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 420 LPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred CCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 0000111111110 01122222232322 11234899999
Q ss_pred CCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC-CCcE-EEEeccccccCCCCCCCEEEEcCCCCChhHHH
Q 010876 346 DTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPI-MTATDVAARGLDVKDVKYVINYDFPGSLEDYV 423 (498)
Q Consensus 346 ~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~ 423 (498)
......+.+...+.+.++....|.|..++.+|....+.|+.. +..| +++..+++.|+++...+.|++..++|++.-.+
T Consensus 500 HH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLl 579 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLL 579 (689)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEE
Confidence 999999999999999999999999999999999999999954 5555 34557889999999999999999999999999
Q ss_pred HhhcccccCCCcceEEEEec
Q 010876 424 HRIGRTGRAGAKGTAYTFFT 443 (498)
Q Consensus 424 Qr~GR~~R~g~~g~~~~~~~ 443 (498)
|.-.|+.|.|++..+.+.+.
T Consensus 580 QAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 580 QAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred echhhhhhccccceeeEEEE
Confidence 99999999999876655544
No 132
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=6.5e-19 Score=181.46 Aligned_cols=315 Identities=20% Similarity=0.227 Sum_probs=216.7
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.|++.|.-+--.+..| -|+.+.||-|||+++.+|+....+. |..|-||+.+.-||..=++++..+...++
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 7888887776555444 6899999999999999998766665 56688889999999999999999999999
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHH-HHHHhcc------CcccccccEEEeccchhhhc-C-----------
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRMLD-M----------- 255 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-~~~l~~~------~~~l~~~~~vI~DE~h~~~~-~----------- 255 (498)
+.|.++..+...... .-.-.++|+++|...| .++|... ......+.+.|+||+|.++= .
T Consensus 148 LsvG~i~~~~~~~~r--r~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~ 225 (925)
T PRK12903 148 LSVGINKANMDPNLK--REAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQ 225 (925)
T ss_pred CceeeeCCCCChHHH--HHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCC
Confidence 999988876554333 2334589999998764 2333322 12246788999999997550 0
Q ss_pred ----CcHHHHHHHHHhcCC-------------------------------------------------------------
Q 010876 256 ----GFEPQIKKILSQIRP------------------------------------------------------------- 270 (498)
Q Consensus 256 ----~~~~~~~~i~~~~~~------------------------------------------------------------- 270 (498)
.+...+..++..+..
T Consensus 226 ~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV 305 (925)
T PRK12903 226 SNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIV 305 (925)
T ss_pred ccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 011111122221110
Q ss_pred -------------------------------------------------------CCcEEEEcCCCcHHHHHHHHHHhcC
Q 010876 271 -------------------------------------------------------DRQTLYWSATWPKEVEHLARQYLYN 295 (498)
Q Consensus 271 -------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~ 295 (498)
-.++.+||+|...+..++...|..+
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~ 385 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMR 385 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCC
Confidence 0134556666554444444444332
Q ss_pred CeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCH
Q 010876 296 PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQ 374 (498)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~ 374 (498)
.+.+-... .....-...........|...+++.+.+. ..+.||||.|.|+...+.|+..|.+.+++..++++.-.
T Consensus 386 Vv~IPTnk---P~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~- 461 (925)
T PRK12903 386 VNVVPTNK---PVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN- 461 (925)
T ss_pred EEECCCCC---CeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-
Confidence 22221111 00001111123345667888888777664 45669999999999999999999999999999998633
Q ss_pred HHHHHHHHHHhcC-CCcEEEEeccccccCCCCCCC--------EEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccc
Q 010876 375 AERDWVLSEFKAG-KSPIMTATDVAARGLDVKDVK--------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 445 (498)
Q Consensus 375 ~~r~~~~~~f~~g-~~~vLvaT~~~~~Gldi~~v~--------~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 445 (498)
+++..+-. +.| .-.|.|||++++||.||.--. +||....+.|..---|..||+||.|.+|.+..|++-.
T Consensus 462 -e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 462 -AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred -hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 33333222 456 445999999999999996322 8999999999998999999999999999999888876
Q ss_pred cH
Q 010876 446 NA 447 (498)
Q Consensus 446 ~~ 447 (498)
|.
T Consensus 540 D~ 541 (925)
T PRK12903 540 DQ 541 (925)
T ss_pred hH
Confidence 53
No 133
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=1.9e-17 Score=177.86 Aligned_cols=330 Identities=20% Similarity=0.238 Sum_probs=201.0
Q ss_pred CCCcHHHHHHHHHh----hcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH-HHHHHH
Q 010876 114 FEPTPIQAQGWPMA----LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-QQESTK 188 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~----l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~-~~~~~~ 188 (498)
.++++-|.+....+ ..++.+++.|+||+|||++|++|++... .++++||++||++|++|+ .+.+..
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHH
Confidence 38999999954443 3466799999999999999999988753 146799999999999999 466777
Q ss_pred hcCCCCceEEEEeCCCCCch-----------------------------------------------hHHHH--------
Q 010876 189 FGASSKIKSTCIYGGVPKGP-----------------------------------------------QVRDL-------- 213 (498)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~-------- 213 (498)
+....++.+..+.|+..+-- .+..+
T Consensus 315 l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 315 IQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 66666666666555432100 00000
Q ss_pred ----------------hcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-----c-------HH------
Q 010876 214 ----------------QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----F-------EP------ 259 (498)
Q Consensus 214 ----------------~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-----~-------~~------ 259 (498)
...++|||++...|...+.... .+...+++||||||++.+.. . ..
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKAL 473 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHH
Confidence 1124799999988777664433 35678999999999865311 0 00
Q ss_pred --------------------------------------------HHHHH--------H---Hh------c----------
Q 010876 260 --------------------------------------------QIKKI--------L---SQ------I---------- 268 (498)
Q Consensus 260 --------------------------------------------~~~~i--------~---~~------~---------- 268 (498)
.+..+ . .. +
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~ 553 (820)
T PRK07246 474 SGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRV 553 (820)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcce
Confidence 00000 0 00 0
Q ss_pred -----------------CCCCcEEEEcCCCc--HHHHHHHHHHhcCCeEEEEcCCCcccccceeeeE--eec-----chh
Q 010876 269 -----------------RPDRQTLYWSATWP--KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV--DIV-----SES 322 (498)
Q Consensus 269 -----------------~~~~~~i~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~ 322 (498)
+....+|++|||++ +.. .+.+.+..+.... ...+. .........+ ... ..+
T Consensus 554 ~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~-~~~~~-~~~~~~~~~i~~~~p~~~~~~~~ 630 (820)
T PRK07246 554 TYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLF-HKIEK-DKKQDQLVVVDQDMPLVTETSDE 630 (820)
T ss_pred eEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccce-ecCCC-ChHHccEEEeCCCCCCCCCCChH
Confidence 01136788899984 222 2333332221111 11110 0000000000 001 112
Q ss_pred hhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q 010876 323 QKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 401 (498)
Q Consensus 323 ~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 401 (498)
.....+.+.+..+ ..++++||+++|.+..+.+++.|....+++ ...|.-. .+..++++|++++..||++|+.+.+|
T Consensus 631 ~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEG 707 (820)
T PRK07246 631 VYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEG 707 (820)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCC
Confidence 3333444444332 235689999999999999999997654544 4444222 24568999999888999999999999
Q ss_pred CCCCC--CCEEEEcCCCC------------------------------ChhHHHHhhcccccCCCcceEEEEeccc--cH
Q 010876 402 LDVKD--VKYVINYDFPG------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--NA 447 (498)
Q Consensus 402 ldi~~--v~~VI~~~~p~------------------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~--~~ 447 (498)
||+|. ...||...+|. -...+.|.+||.-|...+--++++++.. ..
T Consensus 708 VD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k 787 (820)
T PRK07246 708 VDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTK 787 (820)
T ss_pred CCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCccccc
Confidence 99973 55566666553 1344569999999987654455555543 44
Q ss_pred HHHHHHHHHHHH
Q 010876 448 RFAKELITILEE 459 (498)
Q Consensus 448 ~~~~~l~~~l~~ 459 (498)
.+-+.+++.|-+
T Consensus 788 ~Yg~~~l~sLP~ 799 (820)
T PRK07246 788 SYGKQILASLAE 799 (820)
T ss_pred HHHHHHHHhCCC
Confidence 566666666643
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.80 E-value=7.8e-18 Score=174.62 Aligned_cols=274 Identities=19% Similarity=0.169 Sum_probs=178.8
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.|++.|.-+.-. -++..|+.+.||.|||+++.+|+....+. |..|-||+++..||.+-++++..+...++
T Consensus 76 r~ydvQlig~l~--L~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 76 RHFDVQLIGGLV--LNDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCCchHhhhhHh--hcCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 577777776533 35678999999999999999998755554 56699999999999999999999999999
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHH-HHHhcc------CcccccccEEEeccchhhhcCC-----------
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRMLDMG----------- 256 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~-~~l~~~------~~~l~~~~~vI~DE~h~~~~~~----------- 256 (498)
+.+.++.++.+.... .-.-.++|+.+|...|- ++|... ......+.+.|+||+|.++=..
T Consensus 146 Lsvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~ 223 (870)
T CHL00122 146 LTVGLIQEGMSSEER--KKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQS 223 (870)
T ss_pred CceeeeCCCCChHHH--HHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCC
Confidence 999998887665333 33445899999986532 222221 1234668899999999755000
Q ss_pred -----cHHHHHHHHHhcCC-------------------------------------------------------------
Q 010876 257 -----FEPQIKKILSQIRP------------------------------------------------------------- 270 (498)
Q Consensus 257 -----~~~~~~~i~~~~~~------------------------------------------------------------- 270 (498)
.......+...+..
T Consensus 224 ~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV 303 (870)
T CHL00122 224 KTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIV 303 (870)
T ss_pred ccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 00011111111100
Q ss_pred -------------------------------------------------------CCcEEEEcCCCcHHHHHHHHHHhcC
Q 010876 271 -------------------------------------------------------DRQTLYWSATWPKEVEHLARQYLYN 295 (498)
Q Consensus 271 -------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~ 295 (498)
-..+.+||+|...+..++...|..+
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 383 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLE 383 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCC
Confidence 0245677777765555554444433
Q ss_pred CeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCH
Q 010876 296 PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQ 374 (498)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~ 374 (498)
.+.+ .......... ..........+|...+.+.+.+ ...+.||||-|.|+...+.++..|...+++..++++.-..
T Consensus 384 vv~I--Ptnkp~~R~d-~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 384 VVCI--PTHRPMLRKD-LPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred EEEC--CCCCCcccee-CCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 3222 1111111111 1122334556677777766554 4456799999999999999999999999999999996422
Q ss_pred HHHH-HHHHHHhcCC-CcEEEEeccccccCCCC
Q 010876 375 AERD-WVLSEFKAGK-SPIMTATDVAARGLDVK 405 (498)
Q Consensus 375 ~~r~-~~~~~f~~g~-~~vLvaT~~~~~Gldi~ 405 (498)
.+++ .++.. .|+ -.|.|||++++||.||.
T Consensus 461 ~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 461 VRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred chhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 2222 23322 343 45999999999999973
No 135
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=2.3e-19 Score=183.77 Aligned_cols=323 Identities=21% Similarity=0.295 Sum_probs=212.2
Q ss_pred CCcHHHHHHHHHhhc----CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~----~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
++.+||.+.+.++.+ +-+.|+..+||.|||.+ .+.++.++.+.+ ...|| .||+||+..|.+ |..+|.++.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K---~~~GP-~LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK---QMQGP-FLIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc---ccCCC-eEEeccccccCC-chhhccccc
Confidence 789999999999764 33689999999999977 455666666543 23466 689999988876 677788876
Q ss_pred CCCCceEEEEeCCCCCch---hHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHh
Q 010876 191 ASSKIKSTCIYGGVPKGP---QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 267 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~ 267 (498)
+. +.. ..|.|..... .........+|+++|++.+.. .+..+.--++.++||||.|+|.+. ...+...+..
T Consensus 468 PS--v~~-i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t 540 (1157)
T KOG0386|consen 468 PS--VQK-IQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNT 540 (1157)
T ss_pred cc--eee-eeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhhc
Confidence 55 323 3344432211 112223468999999988755 111111224578999999998864 2233333332
Q ss_pred cCCCCcEEEEcCCC------------------------------------------------------------------
Q 010876 268 IRPDRQTLYWSATW------------------------------------------------------------------ 281 (498)
Q Consensus 268 ~~~~~~~i~~SAT~------------------------------------------------------------------ 281 (498)
.......+++|+|+
T Consensus 541 ~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386|consen 541 HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHh
Confidence 22233345555552
Q ss_pred ---------cHHHHHH------------------------------------------HHHHhcCCeEEEEcCCCccccc
Q 010876 282 ---------PKEVEHL------------------------------------------ARQYLYNPYKVIIGSPDLKANH 310 (498)
Q Consensus 282 ---------~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 310 (498)
|..++.. .++.|..|+.+...........
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~ 700 (1157)
T KOG0386|consen 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHY 700 (1157)
T ss_pred hhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccccccc
Confidence 1111111 1111111111100000000000
Q ss_pred ceeeeEeecchhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCC-
Q 010876 311 AIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK- 388 (498)
Q Consensus 311 ~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~- 388 (498)
.. ...+..+.|+..|..+|-.+. .+++||.||....-.+.+..+|.-..+....+.|....++|...++.|+.-.
T Consensus 701 ~~---~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds 777 (1157)
T KOG0386|consen 701 DI---KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDS 777 (1157)
T ss_pred Ch---hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCC
Confidence 00 112233456666666655443 4679999999999999999999999999999999999999999999999644
Q ss_pred --CcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHH
Q 010876 389 --SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 453 (498)
Q Consensus 389 --~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 453 (498)
+.+|.+|...+.|+|+..++.||.||..|++....|+.-||.|.|+...+-++....-.+.-+.+
T Consensus 778 ~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~i 844 (1157)
T KOG0386|consen 778 PYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKI 844 (1157)
T ss_pred ceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHH
Confidence 34778999999999999999999999999999999999999999998877777665543333333
No 136
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=1.2e-18 Score=146.64 Aligned_cols=119 Identities=45% Similarity=0.756 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q 010876 323 QKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 401 (498)
Q Consensus 323 ~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 401 (498)
.|...+.+++.... .++++||||++...++.+++.|.+.+.++..+|++++..+|..+++.|+++...||++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 67888888887754 46699999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEE
Q 010876 402 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 441 (498)
Q Consensus 402 ldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 441 (498)
+|+|.+++||+++.|++...|.|++||++|.|+.|.+++|
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 137
>COG4889 Predicted helicase [General function prediction only]
Probab=99.79 E-value=7.8e-19 Score=176.98 Aligned_cols=349 Identities=19% Similarity=0.226 Sum_probs=204.8
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHhhcC----CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 010876 103 YVMQEISKAGFFEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 178 (498)
Q Consensus 103 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~----~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~L 178 (498)
++..++.-..-.+|+|||++|+..++++ ...=+++.+|+|||+.++- +...+. ..++|+|+|+.+|
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala---------~~~iL~LvPSIsL 218 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA---------AARILFLVPSISL 218 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh---------hhheEeecchHHH
Confidence 4444454455568999999999998865 2355677899999998655 333332 3569999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCCCchhH-------------------------HHHhcCCcEEEcChHHHHHHHhc
Q 010876 179 AVQIQQESTKFGASSKIKSTCIYGGVPKGPQV-------------------------RDLQKGVEIVIATPGRLIDMLES 233 (498)
Q Consensus 179 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~Ivi~T~~~l~~~l~~ 233 (498)
..|..+++..- ....++...++++....... +....+-.||++|++.+...-+.
T Consensus 219 LsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA 297 (1518)
T COG4889 219 LSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA 297 (1518)
T ss_pred HHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH
Confidence 98887776653 23445544444443211110 11122356999999998776665
Q ss_pred cCcccccccEEEeccchhhhcCCcHH----HHHHHHHh-cCCCCcEEEEcCCCc---HHHHH------------------
Q 010876 234 HNTNLRRVTYLVLDEADRMLDMGFEP----QIKKILSQ-IRPDRQTLYWSATWP---KEVEH------------------ 287 (498)
Q Consensus 234 ~~~~l~~~~~vI~DE~h~~~~~~~~~----~~~~i~~~-~~~~~~~i~~SAT~~---~~~~~------------------ 287 (498)
...-+..+++||.||||+-....... .+.++.+. .-+..+.+.|+||+. +....
T Consensus 298 Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~f 377 (1518)
T COG4889 298 QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTF 377 (1518)
T ss_pred HHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhh
Confidence 55567889999999999854221100 00000000 002334577888852 11111
Q ss_pred ------------HHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHH---HHHHH----Hhhc------------
Q 010876 288 ------------LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK---LVKLL----EDIM------------ 336 (498)
Q Consensus 288 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---l~~~l----~~~~------------ 336 (498)
..+.++.+...+...-.+......+..........-..+. ++-.. ++-.
T Consensus 378 Geef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ 457 (1518)
T COG4889 378 GEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADT 457 (1518)
T ss_pred chhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCc
Confidence 1122222222222111111111111111111111111111 11111 1100
Q ss_pred -CCCeEEEEeCCcccHHHHHHHHh-----------h--CCC--CeEEecCCCCHHHHHHHHH---HHhcCCCcEEEEecc
Q 010876 337 -DGSRILIFMDTKKGCDQITRQLR-----------M--DGW--PALSIHGDKSQAERDWVLS---EFKAGKSPIMTATDV 397 (498)
Q Consensus 337 -~~~~vlIf~~s~~~~~~l~~~L~-----------~--~~~--~~~~lh~~~~~~~r~~~~~---~f~~g~~~vLvaT~~ 397 (498)
+..+.|-||.++++...+++.+. + .++ .+..+.|.|+..+|...+. .|...+++||--...
T Consensus 458 ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRc 537 (1518)
T COG4889 458 APMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARC 537 (1518)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchh
Confidence 11267889999887766665542 1 123 3455678898888854433 234578899988899
Q ss_pred ccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCC-cceEEEEec---------------cccHHHHHHHHHHHHHhC
Q 010876 398 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA-KGTAYTFFT---------------AANARFAKELITILEEAG 461 (498)
Q Consensus 398 ~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~-~g~~~~~~~---------------~~~~~~~~~l~~~l~~~~ 461 (498)
+++|||+|.++-||++++-.+..+.+|.+||+.|... +...|+++. ..+.+.++.+++-|+.+.
T Consensus 538 LSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnALRShD 617 (1518)
T COG4889 538 LSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKALRSHD 617 (1518)
T ss_pred hhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999532 233444432 335678899999998887
Q ss_pred C
Q 010876 462 Q 462 (498)
Q Consensus 462 ~ 462 (498)
.
T Consensus 618 ~ 618 (1518)
T COG4889 618 E 618 (1518)
T ss_pred H
Confidence 6
No 138
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=9.5e-18 Score=162.21 Aligned_cols=326 Identities=14% Similarity=0.092 Sum_probs=223.8
Q ss_pred HHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 010876 108 ISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 187 (498)
Q Consensus 108 l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~ 187 (498)
++++.-.....+|.+++..+-+|+++++.-.|.+||.+++.+.+...+...+ ....+++.|+.+++......+.
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~ 352 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQV 352 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCceE
Confidence 3344455678999999999999999999999999999999988777766532 4457999999999866443322
Q ss_pred Hhc---CCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCc----ccccccEEEeccchhhhcCC---c
Q 010876 188 KFG---ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT----NLRRVTYLVLDEADRMLDMG---F 257 (498)
Q Consensus 188 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~----~l~~~~~vI~DE~h~~~~~~---~ 257 (498)
-.. +...-.++..+.+........-.+.+.+++++.|............ .+-...++++||+|..+..- .
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~ 432 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALA 432 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHH
Confidence 111 1111223444455444444455667889999999887664433222 23345679999999755321 1
Q ss_pred HHHHHHHHHhc-----CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeec---------chhh
Q 010876 258 EPQIKKILSQI-----RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV---------SESQ 323 (498)
Q Consensus 258 ~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 323 (498)
..+++.++..+ ..+.|++-.|||+...++-...-+..+............ .-+..+..- ..+.
T Consensus 433 ~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs---~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 433 QDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPS---SEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCC---ccceEEEeCCCCCCcchhhhhh
Confidence 23344443332 357899999999988777666655555554433222111 111122111 1123
Q ss_pred hHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhC----C----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 010876 324 KYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD----G----WPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 394 (498)
Q Consensus 324 k~~~l~~~l~~-~~~~~~vlIf~~s~~~~~~l~~~L~~~----~----~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLva 394 (498)
++.....++.+ +..+-++|-||.+++-|+.+-...+.. + -.+..+.|+...++|.++..++=.|+..-+|+
T Consensus 510 ~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIa 589 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIA 589 (1034)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEe
Confidence 33333333333 445669999999999998876554432 1 13557889999999999999999999999999
Q ss_pred eccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEe
Q 010876 395 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 442 (498)
Q Consensus 395 T~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 442 (498)
|++++-||||..++.|++.++|.|.+.+.|..|||||..++..++.+.
T Consensus 590 TNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva 637 (1034)
T KOG4150|consen 590 TNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVA 637 (1034)
T ss_pred cchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEE
Confidence 999999999999999999999999999999999999998887666543
No 139
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.78 E-value=8.9e-16 Score=157.86 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=84.3
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhc----CCCcEEEEeccccccCCC--------
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA----GKSPIMTATDVAARGLDV-------- 404 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~----g~~~vLvaT~~~~~Gldi-------- 404 (498)
.+++++|.+.|...++.+++.|...---...+.|+.+ .+...+++|+. +.-.||++|+.+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 3568999999999999999999754212345556443 34568888887 478999999999999999
Q ss_pred C--CCCEEEEcCCCC-------------------------ChhHHHHhhcccccCCCc--ceEEEEeccc-cHHHHHHHH
Q 010876 405 K--DVKYVINYDFPG-------------------------SLEDYVHRIGRTGRAGAK--GTAYTFFTAA-NARFAKELI 454 (498)
Q Consensus 405 ~--~v~~VI~~~~p~-------------------------s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~-~~~~~~~l~ 454 (498)
| .+.+||+..+|. ....+.|-+||.-|...+ --.++++++. ...+.+.+.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~ 626 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQ 626 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHH
Confidence 2 388899887774 133456899999998765 3344444433 445555555
Q ss_pred HHHH
Q 010876 455 TILE 458 (498)
Q Consensus 455 ~~l~ 458 (498)
+..+
T Consensus 627 ~~~~ 630 (636)
T TIGR03117 627 ESVK 630 (636)
T ss_pred HHHH
Confidence 5443
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2e-16 Score=163.91 Aligned_cols=274 Identities=19% Similarity=0.219 Sum_probs=179.2
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.|++.|.-+- +.-++.-|+.+.||-|||+++.+|+....+. |..|-||+++..||.+-++++..+...++
T Consensus 85 r~ydVQliGg--l~Lh~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 85 RHFDVQLIGG--MVLHEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CcchhHHHhh--hhhcCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 5666666554 3335668999999999999999998877665 66699999999999999999999999999
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHH-----HHHHhc--cCcccccccEEEeccchhhh-cCC----------
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-----IDMLES--HNTNLRRVTYLVLDEADRML-DMG---------- 256 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-----~~~l~~--~~~~l~~~~~vI~DE~h~~~-~~~---------- 256 (498)
+.|.++.++... ..+...-.++|+++|...| .+.+.. .......+.+.|+||+|.++ |..
T Consensus 155 Ltvg~i~~~~~~--~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~ 232 (939)
T PRK12902 155 LSVGLIQQDMSP--EERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQV 232 (939)
T ss_pred CeEEEECCCCCh--HHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCC
Confidence 999998876644 3344456789999999775 444332 12345778999999999754 100
Q ss_pred -----cHHHHHHHHHhcCC--------------C----------------------------------------------
Q 010876 257 -----FEPQIKKILSQIRP--------------D---------------------------------------------- 271 (498)
Q Consensus 257 -----~~~~~~~i~~~~~~--------------~---------------------------------------------- 271 (498)
.......+...+.+ .
T Consensus 233 ~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~ 312 (939)
T PRK12902 233 ERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIK 312 (939)
T ss_pred ccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhc
Confidence 01111111111110 0
Q ss_pred --------------------------------------------------------------CcEEEEcCCCcHHHHHHH
Q 010876 272 --------------------------------------------------------------RQTLYWSATWPKEVEHLA 289 (498)
Q Consensus 272 --------------------------------------------------------------~~~i~~SAT~~~~~~~~~ 289 (498)
.++.+||+|...+..++.
T Consensus 313 d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~ 392 (939)
T PRK12902 313 DVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFE 392 (939)
T ss_pred CCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHH
Confidence 134455555544444444
Q ss_pred HHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEe
Q 010876 290 RQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSI 368 (498)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~l 368 (498)
..|..+...+-... .................|...+.+.+.+.. .+.||||-|.|++..+.++..|...+++..++
T Consensus 393 ~iY~l~Vv~IPTnk---P~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 393 KTYKLEVTVIPTNR---PRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHhCCcEEEcCCCC---CeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 43332222211111 111111111223455678888887666654 56699999999999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHhcCC-CcEEEEeccccccCCCC
Q 010876 369 HGDKSQAERD-WVLSEFKAGK-SPIMTATDVAARGLDVK 405 (498)
Q Consensus 369 h~~~~~~~r~-~~~~~f~~g~-~~vLvaT~~~~~Gldi~ 405 (498)
++.-...+++ .++. +.|+ -.|-|||++++||.||.
T Consensus 470 NAk~~~~~~EA~IIa--~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 470 NAKPENVEREAEIVA--QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred eCCCcchHhHHHHHH--hcCCCCcEEEeccCCCCCcCEe
Confidence 9963332333 2332 2454 45899999999999974
No 141
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.77 E-value=4.7e-17 Score=168.14 Aligned_cols=132 Identities=20% Similarity=0.317 Sum_probs=111.0
Q ss_pred hhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEeccc
Q 010876 322 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK--SPIMTATDVA 398 (498)
Q Consensus 322 ~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~--~~vLvaT~~~ 398 (498)
..|++.|.-+|+++. .++++|||+...+..+-|..+|..+|+....+.|....++|+..+++|+... +.+|++|...
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 457777777777654 4569999999999999999999999999999999999999999999999764 4567899999
Q ss_pred cccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHH
Q 010876 399 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 453 (498)
Q Consensus 399 ~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 453 (498)
+.|||+..++.||+||..|++.--.|.-.|+.|.|+...+.+|-.-.+..+-+.|
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeni 1393 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENI 1393 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHH
Confidence 9999999999999999999999999999999999988766665444433333333
No 142
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.76 E-value=1e-15 Score=167.51 Aligned_cols=135 Identities=13% Similarity=0.202 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhhCCC--CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 010876 325 YNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 400 (498)
Q Consensus 325 ~~~l~~~l~~~~--~~~~vlIf~~s~~~~~~l~~~L~~~~~--~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 400 (498)
...+.+.+..+. .++++|||++|.+..+.+++.|..... ....+.-+++...|..+++.|++++-.||++|..+.+
T Consensus 737 ~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwE 816 (928)
T PRK08074 737 IEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWE 816 (928)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccC
Confidence 344555444432 346899999999999999999975422 1223333344446788999999988899999999999
Q ss_pred cCCCCC--CCEEEEcCCCC------------------------------ChhHHHHhhcccccCCCcceEEEEeccc--c
Q 010876 401 GLDVKD--VKYVINYDFPG------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--N 446 (498)
Q Consensus 401 Gldi~~--v~~VI~~~~p~------------------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~--~ 446 (498)
|||+|+ +.+||...+|. -...+.|.+||+-|...+--++++++.. .
T Consensus 817 GVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~ 896 (928)
T PRK08074 817 GIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTT 896 (928)
T ss_pred ccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCcccc
Confidence 999997 57888777664 1233468999999997764456666654 5
Q ss_pred HHHHHHHHHHHHH
Q 010876 447 ARFAKELITILEE 459 (498)
Q Consensus 447 ~~~~~~l~~~l~~ 459 (498)
..+-+.+++.|-.
T Consensus 897 k~Yg~~~l~sLP~ 909 (928)
T PRK08074 897 TSYGKYFLESLPT 909 (928)
T ss_pred chHHHHHHHhCCC
Confidence 5566777776643
No 143
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.76 E-value=2e-17 Score=163.54 Aligned_cols=148 Identities=20% Similarity=0.298 Sum_probs=117.9
Q ss_pred hhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCc-EEEEeccc
Q 010876 321 ESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP-IMTATDVA 398 (498)
Q Consensus 321 ~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~-vLvaT~~~ 398 (498)
++.|+..|..+|..+. .++++|+|.+.-+..+.+.++|...++....+.|.....+|..++.+|+...+- +|++|.+.
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 4567777777776654 456999999999999999999999999999999999999999999999986654 57899999
Q ss_pred cccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHhhhc
Q 010876 399 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGR 473 (498)
Q Consensus 399 ~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 473 (498)
+-|||+..++.||+||..|++..-.|...||.|.|+...+.++-.-.....-+.++....+ .++.++|+.
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~q-----K~~vQq~Vm 1175 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQ-----KDEVQQMVM 1175 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhh-----HHHHHHHHH
Confidence 9999999999999999999999999999999999988655444333322333333333322 345566664
No 144
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=3.7e-18 Score=129.53 Aligned_cols=78 Identities=44% Similarity=0.705 Sum_probs=75.5
Q ss_pred HHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCC
Q 010876 356 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 433 (498)
Q Consensus 356 ~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g 433 (498)
++|+..++++..+||++++.+|..+++.|++++..|||||+++++|+|+|++++||++++|+|+..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999999986
No 145
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=3e-17 Score=158.73 Aligned_cols=266 Identities=18% Similarity=0.195 Sum_probs=180.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 211 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (498)
-++-++||.||||.- +++++.. ....+|.-|.|-||.++++.+.+.+-.+ ..++|........
T Consensus 193 Ii~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~gipC----dL~TGeE~~~~~~- 255 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNALGIPC----DLLTGEERRFVLD- 255 (700)
T ss_pred EEEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhcCCCc----cccccceeeecCC-
Confidence 366779999999987 5666665 4457999999999999999999877443 3444433221111
Q ss_pred HHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhc-CCCCcEEEEcCCCcHHHHHHHH
Q 010876 212 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLAR 290 (498)
Q Consensus 212 ~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~ 290 (498)
+ .+.+..+-||.|+. .. -..+++.|+||++.|.+...+-.+.+.+.-+ ....++.+ .+.+.++++
T Consensus 256 ~-~~~a~hvScTVEM~-------sv-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~ 321 (700)
T KOG0953|consen 256 N-GNPAQHVSCTVEMV-------SV-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVR 321 (700)
T ss_pred C-CCcccceEEEEEEe-------ec-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHH
Confidence 1 22356777887664 11 2467899999999999877655454443222 22333222 124555666
Q ss_pred HHhcC---CeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCC-eE
Q 010876 291 QYLYN---PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-AL 366 (498)
Q Consensus 291 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~-~~ 366 (498)
..+.. ...+. . ++-...-...+.+..-+..+.++..+ .|-|++....+...+.+.+.. +.
T Consensus 322 ~i~k~TGd~vev~--~------------YeRl~pL~v~~~~~~sl~nlk~GDCv--V~FSkk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 322 KILKMTGDDVEVR--E------------YERLSPLVVEETALGSLSNLKPGDCV--VAFSKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred HHHhhcCCeeEEE--e------------ecccCcceehhhhhhhhccCCCCCeE--EEeehhhHHHHHHHHHHhcCcceE
Confidence 55432 22111 0 11111111122445555666565544 455778899999999888665 99
Q ss_pred EecCCCCHHHHHHHHHHHhc--CCCcEEEEeccccccCCCCCCCEEEEcCCC---------CChhHHHHhhcccccCCC-
Q 010876 367 SIHGDKSQAERDWVLSEFKA--GKSPIMTATDVAARGLDVKDVKYVINYDFP---------GSLEDYVHRIGRTGRAGA- 434 (498)
Q Consensus 367 ~lh~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p---------~s~~~~~Qr~GR~~R~g~- 434 (498)
+++|+++++.|...-..|++ ++++||||||++++|+|+ +++.||++++- .+..+..|..|||||.|.
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99999999999999999997 899999999999999999 88999988863 467889999999999874
Q ss_pred --cceEEEEeccc
Q 010876 435 --KGTAYTFFTAA 445 (498)
Q Consensus 435 --~g~~~~~~~~~ 445 (498)
.|.+.+|..++
T Consensus 465 ~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 465 YPQGEVTTLHSED 477 (700)
T ss_pred CcCceEEEeeHhh
Confidence 37777666543
No 146
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.75 E-value=1.6e-16 Score=151.46 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHhhcC---CCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEE-EEec
Q 010876 322 SQKYNKLVKLLEDIMD---GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIM-TATD 396 (498)
Q Consensus 322 ~~k~~~l~~~l~~~~~---~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g-~~~vL-vaT~ 396 (498)
+.|+..|.+-|..+.. ..+.|||.+.-...+.+.-.|.+.|+.+..+.|+|++..|+..++.|++. .+.|+ ++-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 3455555554443322 23789999999999999999999999999999999999999999999975 56654 5558
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCc--ceEEEEeccccHHHHHHHHHHHHHhCCCC
Q 010876 397 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK--GTAYTFFTAANARFAKELITILEEAGQKV 464 (498)
Q Consensus 397 ~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 464 (498)
+.+.-+|+..+.+|+..|+.|+++--+|...|..|.|+. -.++.|+.++. .-..|+++-+++.+.+
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns--iE~kIieLQeKKa~mi 766 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS--IEEKIIELQEKKANMI 766 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc--HHHHHHHHHHHHhhhh
Confidence 888899999999999999999999999999999999975 46666766653 3456666665554433
No 147
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.74 E-value=1e-16 Score=136.47 Aligned_cols=144 Identities=44% Similarity=0.577 Sum_probs=111.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 210 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (498)
+++++.++||+|||.+++..+....... ...+++|++|++.++.|+.+.+..+... .+.+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 4689999999999999887766655441 2567999999999999999999987765 66777777766665555
Q ss_pred HHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCC
Q 010876 211 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 281 (498)
Q Consensus 211 ~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 281 (498)
.......+|+++|++.+...+.........++++|+||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55567789999999999887776555566789999999999987765544333444456788999999995
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.72 E-value=2.6e-16 Score=164.55 Aligned_cols=315 Identities=17% Similarity=0.212 Sum_probs=210.8
Q ss_pred CCcHHHHHHHHHhhcC-CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH-HhcCC
Q 010876 115 EPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-KFGAS 192 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~-~~~~~ 192 (498)
..+|+|.++++.+... .++++.+|+|||||.++.++++. +....+++++.|..+.+..+++.+. +|.+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 3489999999988754 56999999999999998887664 2235679999999999976665554 78888
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHH------HHHHHHH
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP------QIKKILS 266 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~------~~~~i~~ 266 (498)
.+..++.+.|..+.+... ....+|+|+||+++- .++ ..+.+++.|.||.|.+.+.. ++ .++.|-.
T Consensus 1214 ~G~~~~~l~ge~s~~lkl---~~~~~vii~tpe~~d-~lq----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLKL---LQKGQVIISTPEQWD-LLQ----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccchHH---hhhcceEEechhHHH-HHh----hhhhcceEeeehhhhhcccC-CceEEEEeeHHHHHH
Confidence 888888888877654332 334589999999984 443 57789999999999987432 22 2566666
Q ss_pred hcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccce-eeeEeecchhhhHHH----HHHHH-HhhcCCCe
Q 010876 267 QIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAI-RQHVDIVSESQKYNK----LVKLL-EDIMDGSR 340 (498)
Q Consensus 267 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~----l~~~l-~~~~~~~~ 340 (498)
.+.++.+++.+|..+.+ ..+++ .+.....+.+....-..+..+ .+.+........... ....+ .....+++
T Consensus 1285 q~~k~ir~v~ls~~lan-a~d~i--g~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~ 1361 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLAN-ARDLI--GASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKP 1361 (1674)
T ss_pred HHHhheeEEEeehhhcc-chhhc--cccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 67788899999988755 33331 111111111211111111111 222322222222111 11222 22335668
Q ss_pred EEEEeCCcccHHHHHHHHhh----------------------CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 010876 341 ILIFMDTKKGCDQITRQLRM----------------------DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 398 (498)
Q Consensus 341 vlIf~~s~~~~~~l~~~L~~----------------------~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 398 (498)
.+||++++++|..++..|-. ..++..+=|.+++..+...+-..|..|.+.|+|...-
T Consensus 1362 ~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~- 1440 (1674)
T KOG0951|consen 1362 AIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD- 1440 (1674)
T ss_pred eEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-
Confidence 99999999999777654421 1122223388999999999999999999999998855
Q ss_pred cccCCCCCCCEEE----EcC------CCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHH
Q 010876 399 ARGLDVKDVKYVI----NYD------FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 454 (498)
Q Consensus 399 ~~Gldi~~v~~VI----~~~------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 454 (498)
..|+-....-+|+ .|| .+.+.....|+.|+|.| .|.|+++....++++++.++
T Consensus 1441 ~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl 1503 (1674)
T KOG0951|consen 1441 CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFL 1503 (1674)
T ss_pred cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhc
Confidence 6777764433333 233 23458999999999998 46899999888877766654
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.71 E-value=8.5e-17 Score=143.84 Aligned_cols=152 Identities=20% Similarity=0.145 Sum_probs=102.9
Q ss_pred CCcHHHHHHHHHhhc-------CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 010876 115 EPTPIQAQGWPMALK-------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 187 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~-------~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~ 187 (498)
+|+++|.+++..+.. .+.+++.+|||||||.+++..+... .. +++|++|+..|++|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l-~~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILEL-AR----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHH-HC----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcc-cc----------ceeEecCHHHHHHHHHHHHH
Confidence 689999999999873 5789999999999999877544433 32 59999999999999999997
Q ss_pred HhcCCCCceEEEE-----------eCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc-----------CcccccccEEE
Q 010876 188 KFGASSKIKSTCI-----------YGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----------NTNLRRVTYLV 245 (498)
Q Consensus 188 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~-----------~~~l~~~~~vI 245 (498)
.+........... .................+++++|.+.|....... ......+++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 7654422111110 1111111222233456789999999998775431 12345678999
Q ss_pred eccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCc
Q 010876 246 LDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 282 (498)
Q Consensus 246 ~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 282 (498)
+||||++.... .+..++. .+...+|+||||+.
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999977543 1455555 56788999999985
No 150
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=8.3e-16 Score=152.45 Aligned_cols=121 Identities=19% Similarity=0.264 Sum_probs=100.8
Q ss_pred hhhhHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhc--CCCcEEE-Ee
Q 010876 321 ESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA--GKSPIMT-AT 395 (498)
Q Consensus 321 ~~~k~~~l~~~l~~~~--~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~--g~~~vLv-aT 395 (498)
.+.|+..+++.++.+. ...+++|...-......+...|++.|+....+||.....+|+.+++.|+. |..+|++ +-
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 3456777777776652 34478887777777788889999999999999999999999999999984 4456654 55
Q ss_pred ccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEE
Q 010876 396 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 441 (498)
Q Consensus 396 ~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 441 (498)
.+.+.|+|+...+|+|.+|+-|++.--.|...|..|+|++..+++.
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 7888999999999999999999999999999999999998766653
No 151
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=1.2e-14 Score=152.44 Aligned_cols=127 Identities=21% Similarity=0.318 Sum_probs=101.6
Q ss_pred cchhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 010876 319 VSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 397 (498)
Q Consensus 319 ~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 397 (498)
....+|+..+++.+.+. ..+.||||-|.|+...+.|++.|...+++..++++.....+-+.+-+.=+ .-.|-|||++
T Consensus 608 ~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNM 685 (1112)
T PRK12901 608 KTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNM 685 (1112)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccC
Confidence 35567888887777665 45669999999999999999999999999999988755444333333222 3458999999
Q ss_pred ccccCCCC--------CCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 398 AARGLDVK--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 398 ~~~Gldi~--------~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
++||.||. +==+||-...+.|..--.|-.||+||.|.+|.+..|++-.|.
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99999996 223788888999999999999999999999999998887653
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.63 E-value=3.4e-14 Score=149.71 Aligned_cols=312 Identities=21% Similarity=0.235 Sum_probs=174.3
Q ss_pred CCCcHHHHHHHHHhhc----C--Cc--EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 010876 114 FEPTPIQAQGWPMALK----G--RD--LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 185 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~----~--~~--~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~ 185 (498)
..-+.||-+|+..+.+ . +. +|-.|.||||||++=.- ++..+.. ...+.++.|-.-.|.|--|.-+.
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd-----~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD-----DKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC-----CCCCceEEEEccccceeccchHH
Confidence 3457799999998764 1 22 45559999999987333 2323222 23466777777777777776666
Q ss_pred HHHhcCCCCceEEEEeCCCCCch-------------------------------------------hHHHHhc-------
Q 010876 186 STKFGASSKIKSTCIYGGVPKGP-------------------------------------------QVRDLQK------- 215 (498)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~------- 215 (498)
+++-..-.+-...++.|+....+ ....+.+
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 66533222223333333321100 0000000
Q ss_pred -CCcEEEcChHHHHHHHhcc---Ccccc--c--ccEEEeccchhhhcCCcHHHHHHHHHhc-CCCCcEEEEcCCCcHHHH
Q 010876 216 -GVEIVIATPGRLIDMLESH---NTNLR--R--VTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVE 286 (498)
Q Consensus 216 -~~~Ivi~T~~~l~~~l~~~---~~~l~--~--~~~vI~DE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~ 286 (498)
...|+|||++.++...... ...+. . -+.|||||+|.+-... ...+..++.-. .-..++++||||+|+.+.
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 1479999999988765321 11111 1 2579999999754332 23333443311 136789999999998765
Q ss_pred HHH-HHH----------hcCC---eEE---EEcCCCcc----------------------------cccceeeeEeecc-
Q 010876 287 HLA-RQY----------LYNP---YKV---IIGSPDLK----------------------------ANHAIRQHVDIVS- 320 (498)
Q Consensus 287 ~~~-~~~----------~~~~---~~~---~~~~~~~~----------------------------~~~~~~~~~~~~~- 320 (498)
..+ ..| ...| ..+ .+...... .....-..+.+..
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~ 719 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSL 719 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCc
Confidence 432 222 1211 111 11110000 0000000111111
Q ss_pred ---hhhhHHHHHHHH----Hhhc-------C--CCe---EEEEeCCcccHHHHHHHHhhC----C--CCeEEecCCCCHH
Q 010876 321 ---ESQKYNKLVKLL----EDIM-------D--GSR---ILIFMDTKKGCDQITRQLRMD----G--WPALSIHGDKSQA 375 (498)
Q Consensus 321 ---~~~k~~~l~~~l----~~~~-------~--~~~---vlIf~~s~~~~~~l~~~L~~~----~--~~~~~lh~~~~~~ 375 (498)
.......+.+.+ ..+. + +++ .||-+++++.+-.+++.|-.. + +.+.++|+.....
T Consensus 720 ~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~ 799 (1110)
T TIGR02562 720 PRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLL 799 (1110)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHH
Confidence 111222222222 1111 1 122 478888888888888887543 2 3477899998877
Q ss_pred HHHHHHHHH----------------------hc----CCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhccc
Q 010876 376 ERDWVLSEF----------------------KA----GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRT 429 (498)
Q Consensus 376 ~r~~~~~~f----------------------~~----g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~ 429 (498)
.|..+++.. ++ +...|+|+|++++.|+|+ +.+++|- -|.+....+|++||+
T Consensus 800 ~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~ 876 (1110)
T TIGR02562 800 LRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRV 876 (1110)
T ss_pred HHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcc
Confidence 777666543 11 366799999999999999 5666653 345599999999999
Q ss_pred ccCCCc
Q 010876 430 GRAGAK 435 (498)
Q Consensus 430 ~R~g~~ 435 (498)
.|.+..
T Consensus 877 ~R~~~~ 882 (1110)
T TIGR02562 877 NRHRLE 882 (1110)
T ss_pred cccccC
Confidence 998753
No 153
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.62 E-value=1e-12 Score=139.65 Aligned_cols=129 Identities=21% Similarity=0.368 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhC-CCCeEEecCCCCHHHHHHHHHHHh----cCCCcEEEEeccc
Q 010876 325 YNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFK----AGKSPIMTATDVA 398 (498)
Q Consensus 325 ~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~r~~~~~~f~----~g~~~vLvaT~~~ 398 (498)
...+.+.+..+. ..+.+|||++|....+.++..|... +.+ ...++.. .+..+++.|+ +++-.||++|..+
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 334444443322 3446899999999999999998743 333 4445642 4667887776 4677899999999
Q ss_pred cccCCCCC--CCEEEEcCCCC----C--------------------------hhHHHHhhcccccCCCcceEEEEeccc-
Q 010876 399 ARGLDVKD--VKYVINYDFPG----S--------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA- 445 (498)
Q Consensus 399 ~~Gldi~~--v~~VI~~~~p~----s--------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~- 445 (498)
.+|||+|+ +.+||...+|. + ...+.|.+||.-|...+--++++++..
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~ 675 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRL 675 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccc
Confidence 99999987 78898877664 1 123458899999987664455555553
Q ss_pred -cHHHHHHHHHHH
Q 010876 446 -NARFAKELITIL 457 (498)
Q Consensus 446 -~~~~~~~l~~~l 457 (498)
...+-+.+++.|
T Consensus 676 ~~~~Yg~~~l~sL 688 (697)
T PRK11747 676 LTKRYGKRLLDAL 688 (697)
T ss_pred cchhHHHHHHHhC
Confidence 445556666554
No 154
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.62 E-value=1.3e-13 Score=153.19 Aligned_cols=337 Identities=20% Similarity=0.241 Sum_probs=214.3
Q ss_pred CCCcHHHHHHHHHhh-----cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 010876 114 FEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 188 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l-----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~ 188 (498)
..++++|.+.++++. .+.+.++..++|.|||+..+.. +.++.... ....+.++++||+ ++..+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~-l~~~~~~~---~~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIAL-LLSLLESI---KVYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHH-HHhhhhcc---cCCCCCeEEEecH-HHHHHHHHHHhh
Confidence 468899999998855 2567888999999999875543 33322221 1113468999998 677789999999
Q ss_pred hcCCCCceEEEEeCCCCC----chhHHHHhcC-----CcEEEcChHHHHHHH-hccCcccccccEEEeccchhhhcCCcH
Q 010876 189 FGASSKIKSTCIYGGVPK----GPQVRDLQKG-----VEIVIATPGRLIDML-ESHNTNLRRVTYLVLDEADRMLDMGFE 258 (498)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~Ivi~T~~~l~~~l-~~~~~~l~~~~~vI~DE~h~~~~~~~~ 258 (498)
|.+.... +...+|.... ......+... .+++++|++.+...+ ......-..+.++|+||+|++.+.. .
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s 489 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-S 489 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-h
Confidence 8876553 5555555431 3333333332 789999999987742 1122334567899999999977653 2
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCC-cHHHHHH---HH-HHh---------------cCC----------------------
Q 010876 259 PQIKKILSQIRPDRQTLYWSATW-PKEVEHL---AR-QYL---------------YNP---------------------- 296 (498)
Q Consensus 259 ~~~~~i~~~~~~~~~~i~~SAT~-~~~~~~~---~~-~~~---------------~~~---------------------- 296 (498)
.....+. .+. ....+.+|.|+ .+.+.++ .. ..+ ..+
T Consensus 490 ~~~~~l~-~~~-~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 490 SEGKALQ-FLK-ALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred HHHHHHH-HHh-hcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 2222222 222 11225555553 1111000 00 000 000
Q ss_pred -----------eE--EEEcCC---------C------------cc----cccce----ee----------eE--------
Q 010876 297 -----------YK--VIIGSP---------D------------LK----ANHAI----RQ----------HV-------- 316 (498)
Q Consensus 297 -----------~~--~~~~~~---------~------------~~----~~~~~----~~----------~~-------- 316 (498)
.. +....+ . .. ....+ .. ..
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 00 000000 0 00 00000 00 00
Q ss_pred --ee-----------------------------------cchh-hhHHHHHHHH-Hh-hcCCC--eEEEEeCCcccHHHH
Q 010876 317 --DI-----------------------------------VSES-QKYNKLVKLL-ED-IMDGS--RILIFMDTKKGCDQI 354 (498)
Q Consensus 317 --~~-----------------------------------~~~~-~k~~~l~~~l-~~-~~~~~--~vlIf~~s~~~~~~l 354 (498)
.+ +... .|...+.+++ .. ...+. +++||++.....+.+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 00 0011 5677777777 33 33455 899999999999999
Q ss_pred HHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC--CCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC
Q 010876 355 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG--KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 432 (498)
Q Consensus 355 ~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~ 432 (498)
...|+..++....++|.++..+|..+++.|.++ ...+++++.+.+.|+|+..+++||++|+.|++....|...|+.|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 999999988999999999999999999999986 444667778999999999999999999999999999999999999
Q ss_pred CCcceEEEEeccccHHHHHHHHHHHHH
Q 010876 433 GAKGTAYTFFTAANARFAKELITILEE 459 (498)
Q Consensus 433 g~~g~~~~~~~~~~~~~~~~l~~~l~~ 459 (498)
|++..+.++-.......-+.+++....
T Consensus 808 gQ~~~v~v~r~i~~~tiEe~i~~~~~~ 834 (866)
T COG0553 808 GQKRPVKVYRLITRGTIEEKILELQEK 834 (866)
T ss_pred cCcceeEEEEeecCCcHHHHHHHHHHH
Confidence 998776666554444444444444433
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.61 E-value=2.3e-15 Score=115.27 Aligned_cols=81 Identities=46% Similarity=0.735 Sum_probs=77.3
Q ss_pred HHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC
Q 010876 353 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 432 (498)
Q Consensus 353 ~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~ 432 (498)
.+++.|+..++++..+||+++..+|..+++.|+++...|||+|+++++|+|+|++++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 010876 433 G 433 (498)
Q Consensus 433 g 433 (498)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.61 E-value=2.2e-13 Score=142.13 Aligned_cols=278 Identities=11% Similarity=0.092 Sum_probs=163.5
Q ss_pred EcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHH---
Q 010876 136 IAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD--- 212 (498)
Q Consensus 136 ~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 212 (498)
.+-+|||||.+|+-.+-..+.. |..+|||+|...|..|+.+.|+..+.. ..+..++++.+..+..+.
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHH
Confidence 3446999999987755444443 677999999999999999999976532 357778888776544332
Q ss_pred H-hcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-----cHHHHHHHHHhcCCCCcEEEEcCCCcHHHH
Q 010876 213 L-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----FEPQIKKILSQIRPDRQTLYWSATWPKEVE 286 (498)
Q Consensus 213 ~-~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 286 (498)
+ .....|||+|-..+ ...+.++++||+||-|.-.-.. |...--.++.....+..+|+.|||++-+..
T Consensus 236 ~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 236 VLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred HhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 3 33478999995443 3457899999999999533211 122212233333467889999999876655
Q ss_pred HHHHHHhcCCeEEEEcCCCcccccceeeeEeecch-h-----h----hHHHHHHHHHhhcCCCeEEEEeCCcccH-----
Q 010876 287 HLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-S-----Q----KYNKLVKLLEDIMDGSRILIFMDTKKGC----- 351 (498)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~----k~~~l~~~l~~~~~~~~vlIf~~s~~~~----- 351 (498)
..+..-. ...+..............+.+..... . . --..+.+.+++..+.+++|||.|.+..+
T Consensus 309 ~~~~~g~--~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C 386 (665)
T PRK14873 309 ALVESGW--AHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLAC 386 (665)
T ss_pred HHHhcCc--ceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEh
Confidence 4443221 11111111000000000111111000 0 0 1123444444433344999999987654
Q ss_pred ------------------------------------------------------HHHHHHHhhC--CCCeEEecCCCCHH
Q 010876 352 ------------------------------------------------------DQITRQLRMD--GWPALSIHGDKSQA 375 (498)
Q Consensus 352 ------------------------------------------------------~~l~~~L~~~--~~~~~~lh~~~~~~ 375 (498)
+++++.|.+. +.++..+
T Consensus 387 ~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~------- 459 (665)
T PRK14873 387 ARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS------- 459 (665)
T ss_pred hhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE-------
Confidence 2222222221 1112211
Q ss_pred HHHHHHHHHhcCCCcEEEEec----cccccCCCCCCCEEEEcCCCC------------ChhHHHHhhcccccCCCcceEE
Q 010876 376 ERDWVLSEFKAGKSPIMTATD----VAARGLDVKDVKYVINYDFPG------------SLEDYVHRIGRTGRAGAKGTAY 439 (498)
Q Consensus 376 ~r~~~~~~f~~g~~~vLvaT~----~~~~Gldi~~v~~VI~~~~p~------------s~~~~~Qr~GR~~R~g~~g~~~ 439 (498)
+++.+++.|. ++.+|||+|+ ++. +++..|+..|... ....+.|..||+||....|.++
T Consensus 460 d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~ 533 (665)
T PRK14873 460 GGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVV 533 (665)
T ss_pred ChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEE
Confidence 2345788886 5999999998 555 3567776555331 2445678899999998899999
Q ss_pred EEeccc
Q 010876 440 TFFTAA 445 (498)
Q Consensus 440 ~~~~~~ 445 (498)
+...++
T Consensus 534 iq~~p~ 539 (665)
T PRK14873 534 VVAESS 539 (665)
T ss_pred EEeCCC
Confidence 876444
No 157
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.61 E-value=2.1e-13 Score=145.94 Aligned_cols=119 Identities=17% Similarity=0.290 Sum_probs=84.6
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhCCCC-eEEecCCCCHHHHHHHHHHHhcCCC-cEEEEeccccccCCCCC--CCEEEEc
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAERDWVLSEFKAGKS-PIMTATDVAARGLDVKD--VKYVINY 413 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gldi~~--v~~VI~~ 413 (498)
++++|||++|...++.+++.+...... ....++..+ +...++.|+++.- .++|+|..+.+|||+++ +..||..
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 348999999999999999999876542 445555544 3477888876544 89999999999999997 4678877
Q ss_pred CCCC------------------------------ChhHHHHhhcccccCCCcceEEEEeccc--cHHHHHHHHHHHHH
Q 010876 414 DFPG------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--NARFAKELITILEE 459 (498)
Q Consensus 414 ~~p~------------------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~--~~~~~~~l~~~l~~ 459 (498)
..|. ......|.+||+-|...+.-.+++++.. ...+-..+.+.+..
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~ 633 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPP 633 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCC
Confidence 7665 3456679999999976665555555543 22244444444433
No 158
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=9.7e-13 Score=140.94 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=60.7
Q ss_pred CCCCCcHHHHHHHHHhh----cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 010876 112 GFFEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 187 (498)
Q Consensus 112 ~~~~~~~~Q~~~i~~~l----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~ 187 (498)
.|..++|.|.+.+..+. .+.++++.+|||+|||++.+.|++.++...+ ..++++|++.|.+-..|+.++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHHH
Confidence 45567999999887654 5778999999999999999999998876532 24689999999999999999998
Q ss_pred Hh
Q 010876 188 KF 189 (498)
Q Consensus 188 ~~ 189 (498)
+.
T Consensus 82 ~~ 83 (705)
T TIGR00604 82 KL 83 (705)
T ss_pred hh
Confidence 84
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.59 E-value=2.5e-13 Score=139.80 Aligned_cols=289 Identities=17% Similarity=0.195 Sum_probs=185.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 211 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (498)
-.++.+|+|||||.+.+- .+...... ...++|+|+.+++|+.+....++..+.. +.. .|.+.... .+.
T Consensus 51 V~vVRSpMGTGKTtaLi~-wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~-~i~ 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIR-WLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDY-IID 118 (824)
T ss_pred eEEEECCCCCCcHHHHHH-HHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccc-ccc
Confidence 378889999999987433 33333221 2567999999999999999998875422 111 11111110 000
Q ss_pred HHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHH-------HHHHHHhcCCCCcEEEEcCCCcHH
Q 010876 212 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQ-------IKKILSQIRPDRQTLYWSATWPKE 284 (498)
Q Consensus 212 ~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~-------~~~i~~~~~~~~~~i~~SAT~~~~ 284 (498)
....+-+++..+.|..+. ...+.++++||+||+-.++..-|.+. +..+...++....+|++-|++...
T Consensus 119 --~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 119 --GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred --ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 113467777777775553 22466799999999997765433222 223344556889999999999999
Q ss_pred HHHHHHHHhcCC-eEEEEcCCCcccccceeeeEe-----------------------------------ecchhhhHHHH
Q 010876 285 VEHLARQYLYNP-YKVIIGSPDLKANHAIRQHVD-----------------------------------IVSESQKYNKL 328 (498)
Q Consensus 285 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~k~~~l 328 (498)
..+++..+..+. +.+++.... .....-.+-+. .....+.....
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~-~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYA-SPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeee-cCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 999999877654 333332210 00000000000 00012233445
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCC
Q 010876 329 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK 408 (498)
Q Consensus 329 ~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~ 408 (498)
-.++..+..++++.||+.|...++.+++..+.....+..+++..+..+. +.| ++.+|+|-|.++..|+++....
T Consensus 273 ~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~H 346 (824)
T PF02399_consen 273 SELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEKH 346 (824)
T ss_pred HHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchhh
Confidence 5566667778899999999999999999998888888888887665532 222 5789999999999999996543
Q ss_pred --EEEEcCCC----CChhHHHHhhcccccCCCcceEEEEeccc
Q 010876 409 --YVINYDFP----GSLEDYVHRIGRTGRAGAKGTAYTFFTAA 445 (498)
Q Consensus 409 --~VI~~~~p----~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 445 (498)
-|+-|=-| .+..+..|++||+-.. .....+++++..
T Consensus 347 F~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 347 FDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred ceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 23323112 2456789999999555 566777777754
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.55 E-value=8.5e-12 Score=122.44 Aligned_cols=291 Identities=19% Similarity=0.270 Sum_probs=200.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhcCCC-CceE----EEEeC--------------CCCCchhHHHHhc----------
Q 010876 165 DGPIVLVLAPTRELAVQIQQESTKFGASS-KIKS----TCIYG--------------GVPKGPQVRDLQK---------- 215 (498)
Q Consensus 165 ~~~~vlvl~P~~~La~q~~~~~~~~~~~~-~~~~----~~~~~--------------~~~~~~~~~~~~~---------- 215 (498)
..|+||||+|+|..|.++.+.+.++.... .+.. ..-+| ..........+-.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 36899999999999999988887765441 1000 00011 0000001111111
Q ss_pred ---------------CCcEEEcChHHHHHHHhc------cCcccccccEEEeccchhhhcCCcHHHHHHHHHhc---CC-
Q 010876 216 ---------------GVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI---RP- 270 (498)
Q Consensus 216 ---------------~~~Ivi~T~~~l~~~l~~------~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~---~~- 270 (498)
..|||||+|=-|...+.. ....|+++.++|+|.+|.++-.. ...+..++..+ +.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCCC
Confidence 248999999888777663 34458999999999999776544 34444444443 21
Q ss_pred --------------------CCcEEEEcCCCcHHHHHHHHHHhcCCeE-EEEcCCC------cccccceeeeEeecc---
Q 010876 271 --------------------DRQTLYWSATWPKEVEHLARQYLYNPYK-VIIGSPD------LKANHAIRQHVDIVS--- 320 (498)
Q Consensus 271 --------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~--- 320 (498)
-+|+|++|+...+++..+....+.+..- +.+.... ......+.|.+...+
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 2599999999999999999987765431 2211111 123344555554322
Q ss_pred ----hhhhHHHHHH-HHHhhc---CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 010876 321 ----ESQKYNKLVK-LLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 392 (498)
Q Consensus 321 ----~~~k~~~l~~-~l~~~~---~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vL 392 (498)
.+.+++.... ++-.+. ....+|||++|.-+--.+..+|++.++....+|...+..+...+-..|.+|+.+||
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 2233333333 222232 34589999999999999999999999999999999999999999999999999999
Q ss_pred EEeccc--cccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCC------cceEEEEeccccHHHHHHHHHH
Q 010876 393 TATDVA--ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA------KGTAYTFFTAANARFAKELITI 456 (498)
Q Consensus 393 vaT~~~--~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~------~g~~~~~~~~~~~~~~~~l~~~ 456 (498)
+.|.=+ -+-..|.++..||+|.+|..+.-|...+.-...... ...|.++++.-|.-.++.|+.-
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 999643 466788999999999999999988888765555432 5799999999887766666643
No 161
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.53 E-value=2.2e-13 Score=139.03 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhC----------------------CCCeEEecCCCCHHHHH
Q 010876 322 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD----------------------GWPALSIHGDKSQAERD 378 (498)
Q Consensus 322 ~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~----------------------~~~~~~lh~~~~~~~r~ 378 (498)
+.|.-.|+++|.... -+.++|||.++....+.+..+|... |.....|.|.....+|+
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 345566677776543 2569999999999999999998531 34567889999999999
Q ss_pred HHHHHHhcC----CCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEec
Q 010876 379 WVLSEFKAG----KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 443 (498)
Q Consensus 379 ~~~~~f~~g----~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 443 (498)
...+.|++- ..-+||+|.+.+-|+|+-.++.||+||..|++..-.|.|=|+.|.|+.--||+|-.
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhh
Confidence 999999853 23379999999999999999999999999999999999999999999988887633
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.40 E-value=4e-12 Score=122.92 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=93.2
Q ss_pred HHHHHHHHhhc-------------CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 010876 119 IQAQGWPMALK-------------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 185 (498)
Q Consensus 119 ~Q~~~i~~~l~-------------~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~ 185 (498)
||.+++.+++. .+.+|++.++|+|||..++. ++..+..... ......+|||||. .+..||.++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~--~~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIA-LISYLKNEFP--QRGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHH-HHHHHHHCCT--TSS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhh-hhhhhhhccc--cccccceeEeecc-chhhhhhhh
Confidence 68888887642 34699999999999988655 4444443211 1112249999999 888999999
Q ss_pred HHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc---cCcccccccEEEeccchhhhcCCcHHHHH
Q 010876 186 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES---HNTNLRRVTYLVLDEADRMLDMGFEPQIK 262 (498)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~---~~~~l~~~~~vI~DE~h~~~~~~~~~~~~ 262 (498)
+.++.....+++..+.+...............+++|+|++.+...... ..+.-.++++||+||+|.+.+.. ....
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--cccc
Confidence 999986655666666655411111112234578999999999811000 01111348899999999996553 2333
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 010876 263 KILSQIRPDRQTLYWSATW 281 (498)
Q Consensus 263 ~i~~~~~~~~~~i~~SAT~ 281 (498)
..+..+. ....+++|||+
T Consensus 155 ~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-
T ss_pred ccccccc-cceEEeecccc
Confidence 3444454 67789999996
No 163
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.39 E-value=5.2e-11 Score=130.04 Aligned_cols=286 Identities=14% Similarity=0.138 Sum_probs=161.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 210 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (498)
+..+++.-+|||||+.... +...+... ...|.|+||+.++.|-.|..+.+..+........ ...+.....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 3599999999999988444 44444443 3578999999999999999999999876543211 222333333
Q ss_pred HHHhcC-CcEEEcChHHHHHHHhccC--cccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHH
Q 010876 211 RDLQKG-VEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEH 287 (498)
Q Consensus 211 ~~~~~~-~~Ivi~T~~~l~~~l~~~~--~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 287 (498)
+.+... ..|+|+|.++|-..+.... ..-.+-=+||+||||+--. +..-..+...+ ++...++||+|+-..-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~---G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY---GELAKLLKKAL-KKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc---cHHHHHHHHHh-ccceEEEeeCCccccccc
Confidence 444433 4899999999987765531 1112223799999998542 33333333333 457889999997332222
Q ss_pred H-HHHHhcCCeEEEEcCCCcccccceeeeEeec------------------------ch---------------------
Q 010876 288 L-ARQYLYNPYKVIIGSPDLKANHAIRQHVDIV------------------------SE--------------------- 321 (498)
Q Consensus 288 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~--------------------- 321 (498)
. ....+.+..+.+...........+...+... ..
T Consensus 420 ~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 499 (962)
T COG0610 420 DTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAV 499 (962)
T ss_pred cchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchH
Confidence 1 1222333333322221111111111000000 00
Q ss_pred --hhhHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhCCC---------C--------------eEEecCCCCHH
Q 010876 322 --SQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGW---------P--------------ALSIHGDKSQA 375 (498)
Q Consensus 322 --~~k~~~l~~~l~~-~~~~~~vlIf~~s~~~~~~l~~~L~~~~~---------~--------------~~~lh~~~~~~ 375 (498)
..-...+.+.... .....++++.+.++.-|..+.+....... . ....|.. ...
T Consensus 500 r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~ 578 (962)
T COG0610 500 RLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKD 578 (962)
T ss_pred HHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHH
Confidence 0000111111222 22234777777777744444433322100 0 0000111 122
Q ss_pred HHHHHHHH--HhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccC
Q 010876 376 ERDWVLSE--FKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 432 (498)
Q Consensus 376 ~r~~~~~~--f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~ 432 (498)
.+.....+ .+....++||.++++-+|+|-|.++.+ .+|-|.-....+|.+.|+.|.
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccC
Confidence 33334444 345689999999999999999988865 566777788999999999995
No 164
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.36 E-value=4.7e-11 Score=124.08 Aligned_cols=316 Identities=20% Similarity=0.215 Sum_probs=197.5
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
-++|+-.|.+-.+.-+..-++-+.||-|||+++.+|+.-..+. +..|.++....-||..-.+++..+...++
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 3444445555566666778999999999999999997766554 55688999999999999999999999999
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHH-----HHHHhc--cCcccccccEEEeccchhhhc----------C--
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-----IDMLES--HNTNLRRVTYLVLDEADRMLD----------M-- 255 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-----~~~l~~--~~~~l~~~~~vI~DE~h~~~~----------~-- 255 (498)
+.+.+...+.+...... .-.|+|..+|...| .+.+.. .......+.+.|+||+|.++= .
T Consensus 150 lsvG~~~~~m~~~ek~~--aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRA--AYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHH--HHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 99999998886544433 34589999997654 221111 122345678999999997541 0
Q ss_pred ----CcHHHHHHHHHhcCCC--------CcEE------------------------------------------------
Q 010876 256 ----GFEPQIKKILSQIRPD--------RQTL------------------------------------------------ 275 (498)
Q Consensus 256 ----~~~~~~~~i~~~~~~~--------~~~i------------------------------------------------ 275 (498)
.....+..++..+... .+.+
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 1122333333222111 1111
Q ss_pred -------------------------------------------------------------EEcCCCcHHHHHHHHHHhc
Q 010876 276 -------------------------------------------------------------YWSATWPKEVEHLARQYLY 294 (498)
Q Consensus 276 -------------------------------------------------------------~~SAT~~~~~~~~~~~~~~ 294 (498)
+||.|...+..++...|..
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 1222211111122111111
Q ss_pred CCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010876 295 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 373 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 373 (498)
+...+....+- ... -...........|+..++..+.. ...+.|+||-+.+++..+.+.+.|++.+++..+++..-.
T Consensus 388 ~vv~iPTnrp~--~R~-D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h 464 (822)
T COG0653 388 DVVVIPTNRPI--IRL-DEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH 464 (822)
T ss_pred ceeeccCCCcc--cCC-CCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH
Confidence 11111111100 000 01111223456677777776665 445679999999999999999999999999999988765
Q ss_pred HHHHHHHHHHHhcCCC-cEEEEeccccccCCCCCCC-----------EEEEcCCCCChhHHHHhhcccccCCCcceEEEE
Q 010876 374 QAERDWVLSEFKAGKS-PIMTATDVAARGLDVKDVK-----------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 441 (498)
Q Consensus 374 ~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gldi~~v~-----------~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 441 (498)
..+-+.+- . .|+. -|-|||+++++|-||.--. +||-...-.|-.---|-.||+||.|-+|.+-.|
T Consensus 465 ~~EA~Iia--~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~ 541 (822)
T COG0653 465 AREAEIIA--Q-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFY 541 (822)
T ss_pred HHHHHHHh--h-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhh
Confidence 33333332 2 3433 4789999999999985322 344444444444455899999999988988877
Q ss_pred ecccc
Q 010876 442 FTAAN 446 (498)
Q Consensus 442 ~~~~~ 446 (498)
++-.|
T Consensus 542 lSleD 546 (822)
T COG0653 542 LSLED 546 (822)
T ss_pred hhhHH
Confidence 76543
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.34 E-value=2.9e-12 Score=105.00 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=80.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
|+-.++-..+|+|||.-.+.-++..... .+.++|||.|||.++..+.+.++... +++.. .-. .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~~----~~~~t--~~~-~--- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGLP----VRFHT--NAR-M--- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTSS----EEEES--TTS-S---
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcCC----cccCc--eee-e---
Confidence 4457888999999998655545554444 26789999999999999888886532 22211 100 0
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC--cHHHHHHHHHhcCCCCcEEEEcCCCcHHHH
Q 010876 210 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATWPKEVE 286 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 286 (498)
.....+.-|-++|+..+.+++.+ ...+.++++||+||||-.-... +...+...- . .....+|+||||+|....
T Consensus 67 -~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~-~-~g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 67 -RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELA-E-SGEAKVIFMTATPPGSED 141 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHH-H-TTS-EEEEEESS-TT---
T ss_pred -ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhh-h-ccCeeEEEEeCCCCCCCC
Confidence 12234557889999998888766 4557899999999999643221 122222221 1 234679999999987553
No 166
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.33 E-value=1.6e-11 Score=125.25 Aligned_cols=304 Identities=18% Similarity=0.222 Sum_probs=182.1
Q ss_pred HHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH-----hcCCCCceEE
Q 010876 124 WPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-----FGASSKIKST 198 (498)
Q Consensus 124 i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~-----~~~~~~~~~~ 198 (498)
+..+..+..+++.+.||+|||..+.--+|..+..+.. +-..-+.+..|++-.+..+++.+.+ .+...+..+.
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~---g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vR 463 (1282)
T KOG0921|consen 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN---GASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVR 463 (1282)
T ss_pred HHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc---cccccceeccccccchHHHHHHHHHhhHHhhccccccccc
Confidence 3344456668999999999999887777777776432 1123367778888777777666553 2222221111
Q ss_pred EEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEE
Q 010876 199 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYW 277 (498)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~ 277 (498)
. .-.-....--|..||.+-++..+++.. ..+.++|+||+|...- ..|...+.+-+....++..+++|
T Consensus 464 f---------~Sa~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 464 F---------DSATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred c---------cccccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhh
Confidence 0 000011123688999999999887764 4667899999996432 22433333333333455666666
Q ss_pred cCCCcHH--------------------HHHHHHHHhcCCeEEEEcCCC----------cccccc-eeeeEe-ecc-----
Q 010876 278 SATWPKE--------------------VEHLARQYLYNPYKVIIGSPD----------LKANHA-IRQHVD-IVS----- 320 (498)
Q Consensus 278 SAT~~~~--------------------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~-~~~----- 320 (498)
|||+..+ ++.+....+..+......... ...... ...... .++
T Consensus 532 satIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~ 611 (1282)
T KOG0921|consen 532 SATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNE 611 (1282)
T ss_pred hcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcc
Confidence 6665322 222222222111111110000 000000 000000 000
Q ss_pred ----------h----hhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC-------CCCeEEecCCCCHHHHHH
Q 010876 321 ----------E----SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD-------GWPALSIHGDKSQAERDW 379 (498)
Q Consensus 321 ----------~----~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~-------~~~~~~lh~~~~~~~r~~ 379 (498)
. ..-.+.+...+....-.+-++||.+--...-.|...|... .+++..+|+.....+..+
T Consensus 612 ~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrk 691 (1282)
T KOG0921|consen 612 STRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRK 691 (1282)
T ss_pred hhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhh
Confidence 0 0111222222222222357999999988887777777432 467888999999999999
Q ss_pred HHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCC------------------CCChhHHHHhhcccccCCCcceEEEE
Q 010876 380 VLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTF 441 (498)
Q Consensus 380 ~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~ 441 (498)
+.+....|..+++++|.+++..+.|.++.+||+.+. ..|....+||.||++|. +.|.|+.+
T Consensus 692 vf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~l 770 (1282)
T KOG0921|consen 692 VFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHL 770 (1282)
T ss_pred ccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccc
Confidence 999999999999999999999999999888875442 22567789999999998 78888876
Q ss_pred ec
Q 010876 442 FT 443 (498)
Q Consensus 442 ~~ 443 (498)
..
T Consensus 771 cs 772 (1282)
T KOG0921|consen 771 CS 772 (1282)
T ss_pred cH
Confidence 65
No 167
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=9.9e-11 Score=113.47 Aligned_cols=344 Identities=20% Similarity=0.229 Sum_probs=220.7
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEE-cCCCchH--HHHHHHHHHHHHhcCCC---------CC--------------CCCC
Q 010876 113 FFEPTPIQAQGWPMALKGRDLIGI-AETGSGK--TLAYLLPAIVHVNAQPF---------LA--------------PGDG 166 (498)
Q Consensus 113 ~~~~~~~Q~~~i~~~l~~~~~i~~-a~TGsGK--T~~~~l~~l~~~~~~~~---------~~--------------~~~~ 166 (498)
-..+|+.|.+.+..+.+.+|++.. ...+.|+ +-+|++.+++|+.+... .. .-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 357999999999999999997654 3334555 46788889998854221 00 0125
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCce-E--------EEEeCCCC--------CchhHHHH----------------
Q 010876 167 PIVLVLAPTRELAVQIQQESTKFGASSKIK-S--------TCIYGGVP--------KGPQVRDL---------------- 213 (498)
Q Consensus 167 ~~vlvl~P~~~La~q~~~~~~~~~~~~~~~-~--------~~~~~~~~--------~~~~~~~~---------------- 213 (498)
|+||||||+|+-|..+.+.+..+....+-. . ..-|++.. .-...+.+
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 899999999999999999888764332211 0 00111100 00000000
Q ss_pred ---------hcCCcEEEcChHHHHHHHhc------cCcccccccEEEeccchhhhcCCcHHHHHHHHHhcC---C-----
Q 010876 214 ---------QKGVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR---P----- 270 (498)
Q Consensus 214 ---------~~~~~Ivi~T~~~l~~~l~~------~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~---~----- 270 (498)
....||+||+|=-|.-.+.+ ....++++.++|+|-+|.++...| ..+..++..+. .
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCC
Confidence 11358999999887666652 223478899999999999887664 34444444432 1
Q ss_pred ----------------CCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCc------ccccceeeeE---eec----ch
Q 010876 271 ----------------DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL------KANHAIRQHV---DIV----SE 321 (498)
Q Consensus 271 ----------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~----~~ 321 (498)
-+|+++||+--.+....+...++.+..-......-. .....+.|.+ .+- ..
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 148888888887778888777776533221111100 0001111111 111 11
Q ss_pred hhhHHHHHHHH-HhhcC--CCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 010876 322 SQKYNKLVKLL-EDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 398 (498)
Q Consensus 322 ~~k~~~l~~~l-~~~~~--~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 398 (498)
..++......+ -.+.+ ..-+||+.++.-.--.+..++++..+....+|.-.+...-..+-+.|-.|...||+-|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 22333333221 11111 2258999999999999999999988888888888888877888889999999999999654
Q ss_pred --cccCCCCCCCEEEEcCCCCChhHH---HHhhcccccCCC----cceEEEEeccccHHHHHHHHHHH
Q 010876 399 --ARGLDVKDVKYVINYDFPGSLEDY---VHRIGRTGRAGA----KGTAYTFFTAANARFAKELITIL 457 (498)
Q Consensus 399 --~~Gldi~~v~~VI~~~~p~s~~~~---~Qr~GR~~R~g~----~g~~~~~~~~~~~~~~~~l~~~l 457 (498)
-+-.+|.+|..||+|.+|.++.-| +-+.+|+.-.|+ .-.|.++++.-|.-.++.++..-
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGte 680 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGTE 680 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhHH
Confidence 477899999999999999998765 455555543332 24788889988877777666543
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.18 E-value=3.7e-10 Score=107.49 Aligned_cols=73 Identities=26% Similarity=0.213 Sum_probs=57.4
Q ss_pred CCcHHHHHHHH----HhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 115 EPTPIQAQGWP----MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 115 ~~~~~Q~~~i~----~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
+|+|.|.+.+. .+..+.++++.+|||+|||+++++|++.++...... ..+.+++|+++|.++..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 57999999544 455788899999999999999999999887653210 02347999999999998887777665
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.18 E-value=3.7e-10 Score=107.49 Aligned_cols=73 Identities=26% Similarity=0.213 Sum_probs=57.4
Q ss_pred CCcHHHHHHHH----HhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 115 EPTPIQAQGWP----MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 115 ~~~~~Q~~~i~----~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
+|+|.|.+.+. .+..+.++++.+|||+|||+++++|++.++...... ..+.+++|+++|.++..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 57999999544 455788899999999999999999999887653210 02347999999999998887777665
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.16 E-value=2.2e-08 Score=106.87 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=60.0
Q ss_pred CCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCC--Ccc--------eEEEEeccccHHHHHHHHHHH
Q 010876 388 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG--AKG--------TAYTFFTAANARFAKELITIL 457 (498)
Q Consensus 388 ~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g--~~g--------~~~~~~~~~~~~~~~~l~~~l 457 (498)
..++|++.+++.+|+|.|++-.++-+....|...-.|.+||..|.- +.| .-.++.+.+...++..|.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999998888999999999999953 122 233556677888999999877
Q ss_pred HHh
Q 010876 458 EEA 460 (498)
Q Consensus 458 ~~~ 460 (498)
++.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 665
No 171
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.01 E-value=4.3e-08 Score=99.22 Aligned_cols=118 Identities=19% Similarity=0.299 Sum_probs=97.4
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhCCC------------------CeEEecCCCCHHHHHHHHHHHhcC---CCcEEEEec
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMDGW------------------PALSIHGDKSQAERDWVLSEFKAG---KSPIMTATD 396 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~~~------------------~~~~lh~~~~~~~r~~~~~~f~~g---~~~vLvaT~ 396 (498)
+.++|||..+....+.+.+.|.+..+ ....+.|..+..+|++.+++|+.- ..-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 34899999999999999999875422 233678888899999999999853 234788999
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHH
Q 010876 397 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 455 (498)
Q Consensus 397 ~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 455 (498)
...-|||+-..+-+|.||.-|++..-.|.+.|+-|.|+...|+++-.-.|..+-+.|.+
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIyd 857 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYD 857 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999998877666555555544
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.01 E-value=7.8e-09 Score=95.79 Aligned_cols=128 Identities=26% Similarity=0.306 Sum_probs=95.3
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
..|++.|.-++-.+..|+ |+...||-|||+++.+|+..+.+. |..|-|++.+..||..=++++..+...+
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 489999999987776654 999999999999988888777665 6779999999999999999999999999
Q ss_pred CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHH-HHHhcc----C--cccccccEEEeccchhhh
Q 010876 194 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH----N--TNLRRVTYLVLDEADRML 253 (498)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~-~~l~~~----~--~~l~~~~~vI~DE~h~~~ 253 (498)
++.+.++..+.+...... ...++|+.+|...+. ++|... . .....+.++|+||+|.++
T Consensus 146 Glsv~~~~~~~~~~~r~~--~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERRE--AYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHHH--HHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHHHH--HHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999998876433222 234689999998864 334321 1 124678999999999765
No 173
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.82 E-value=2.6e-09 Score=111.57 Aligned_cols=260 Identities=19% Similarity=0.210 Sum_probs=158.1
Q ss_pred CCcHHHHHHHHHhhc-CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 115 EPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~-~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
...|.|.+.+..... ..++++-+|||+|||++|.++++..+...+ +.++++++|.++|...-.+...+.....
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccC
Confidence 455667666555443 346899999999999999998877766643 5779999999999887777666544444
Q ss_pred CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc--cCcccccccEEEeccchhhhcCCcHHHHHHHHHhc---
Q 010876 194 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--- 268 (498)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~--~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~--- 268 (498)
+++++.+.|+...+. .. ....+++|+||+++.....+ ....+++++.+|+||.|.+.+. +++.++.+.+..
T Consensus 1001 g~k~ie~tgd~~pd~--~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~ 1076 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPDV--KA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYI 1076 (1230)
T ss_pred CceeEeccCccCCCh--hh-eecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccC
Confidence 889999988876652 22 23469999999999776652 3556889999999999987654 355554443322
Q ss_pred ----CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeE-------eecchhhhHHHHHHHHHhhcC
Q 010876 269 ----RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV-------DIVSESQKYNKLVKLLEDIMD 337 (498)
Q Consensus 269 ----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~k~~~l~~~l~~~~~ 337 (498)
.+..+.+++|--+ ....+++..+...+. ...... .........+ .+.....+..-....++...+
T Consensus 1077 s~~t~~~vr~~glsta~-~na~dla~wl~~~~~-~nf~~s--vrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp 1152 (1230)
T KOG0952|consen 1077 SSQTEEPVRYLGLSTAL-ANANDLADWLNIKDM-YNFRPS--VRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSP 1152 (1230)
T ss_pred ccccCcchhhhhHhhhh-hccHHHHHHhCCCCc-CCCCcc--cccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCC
Confidence 2344555555333 234445444433332 111100 1111111111 111122233344556777778
Q ss_pred CCeEEEEeCCcccH----HHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCc
Q 010876 338 GSRILIFMDTKKGC----DQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 390 (498)
Q Consensus 338 ~~~vlIf~~s~~~~----~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~ 390 (498)
..+++||+.++++. ..+...+....-+...++-+ ..+-+.++...++...+
T Consensus 1153 ~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1153 IKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 88999999988754 33433333333445555554 45555666655554443
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.79 E-value=2.2e-07 Score=99.30 Aligned_cols=68 Identities=18% Similarity=0.049 Sum_probs=56.9
Q ss_pred cCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCc
Q 010876 215 KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 282 (498)
Q Consensus 215 ~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 282 (498)
....|+++||..|..-+..+.+++..++.|||||||++....-...+-++...-.+..-+.+|||.+.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 34589999999998877788889999999999999999876666677777777777888999999953
No 175
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.79 E-value=5.5e-08 Score=101.52 Aligned_cols=101 Identities=18% Similarity=0.192 Sum_probs=90.6
Q ss_pred eEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCC-CcE-EEEeccccccCCCCCCCEEEEcCCCC
Q 010876 340 RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK-SPI-MTATDVAARGLDVKDVKYVINYDFPG 417 (498)
Q Consensus 340 ~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~-~~v-LvaT~~~~~Gldi~~v~~VI~~~~p~ 417 (498)
+++||++-..-++.+...|...++....+.|.|+...|.+.+..|..+. ..| +++..+...|+|+..+.+|+..|+-|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8999999999999999999888899999999999999999999999543 334 45678999999999999999999999
Q ss_pred ChhHHHHhhcccccCCCcceEEE
Q 010876 418 SLEDYVHRIGRTGRAGAKGTAYT 440 (498)
Q Consensus 418 s~~~~~Qr~GR~~R~g~~g~~~~ 440 (498)
++....|.+-|+.|.|+.-.+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999876655
No 176
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.66 E-value=5e-07 Score=93.19 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=59.0
Q ss_pred CCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCC--Ccce-----------EEEEeccccHHHHHHH
Q 010876 387 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG--AKGT-----------AYTFFTAANARFAKEL 453 (498)
Q Consensus 387 g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g--~~g~-----------~~~~~~~~~~~~~~~l 453 (498)
...++|++..++-+|+|-|+|=.++-+....|..+=.|-+||..|.. +.|. -.+++...+..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 35789999999999999999999999999999999999999999942 3332 3356667788888888
Q ss_pred HHHHHH
Q 010876 454 ITILEE 459 (498)
Q Consensus 454 ~~~l~~ 459 (498)
.+-+.+
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 875544
No 177
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.62 E-value=1.2e-06 Score=81.62 Aligned_cols=170 Identities=16% Similarity=0.150 Sum_probs=109.1
Q ss_pred cCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhh----------cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 010876 97 DVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL----------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 166 (498)
Q Consensus 97 ~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l----------~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 166 (498)
.+.||+.+.+. ..+...|.+++-.+- +...+++-..||.||--...-.++.++... .
T Consensus 25 ~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r 91 (303)
T PF13872_consen 25 RLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------R 91 (303)
T ss_pred ccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------C
Confidence 44678766553 367889999986653 134588889999999966444456665541 3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc---Cccc-----
Q 010876 167 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH---NTNL----- 238 (498)
Q Consensus 167 ~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~---~~~l----- 238 (498)
.+.|+++.+..|.....+.++.++.. .+.+..+..-. ... ...-...|+++|+..|...-... ...+
T Consensus 92 ~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~-~~~---~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 92 KRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFK-YGD---IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred CceEEEECChhhhhHHHHHHHHhCCC-cccceechhhc-cCc---CCCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 46899999999999999999988754 33333332211 110 01224579999999987764321 1111
Q ss_pred ---ccc-cEEEeccchhhhcCCc--------HHHHHHHHHhcCCCCcEEEEcCCCcHHH
Q 010876 239 ---RRV-TYLVLDEADRMLDMGF--------EPQIKKILSQIRPDRQTLYWSATWPKEV 285 (498)
Q Consensus 239 ---~~~-~~vI~DE~h~~~~~~~--------~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 285 (498)
.++ .+|||||||...+..- ...+..+...+ ++.+++.+|||.-.+.
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep 224 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEP 224 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCC
Confidence 112 4899999999887542 13344455555 5666999999975433
No 178
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.59 E-value=3.2e-07 Score=82.39 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=73.3
Q ss_pred CCcHHHHHHHHHhhcCC--cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 115 EPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~--~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
+|++-|.+++..++... -+++.++.|+|||.+ +..+...+.. .+.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhhC-----
Confidence 47889999999997554 377889999999975 3334445444 25779999999988877665521
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccC----cccccccEEEeccchhhhcCCcHHHHHHHHHhc
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN----TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 268 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~----~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~ 268 (498)
+. ..|..+++....... ..+...++|||||+-.+. ...+..++...
T Consensus 68 --~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 68 --IE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp --S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred --cc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 11 122222211111111 114566899999999876 55667777777
Q ss_pred CC-CCcEEEEcCC
Q 010876 269 RP-DRQTLYWSAT 280 (498)
Q Consensus 269 ~~-~~~~i~~SAT 280 (498)
.. ..+++++--+
T Consensus 118 ~~~~~klilvGD~ 130 (196)
T PF13604_consen 118 KKSGAKLILVGDP 130 (196)
T ss_dssp -T-T-EEEEEE-T
T ss_pred HhcCCEEEEECCc
Confidence 65 5566665544
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.56 E-value=5e-07 Score=83.81 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHhhcCCc-EEEEcCCCchHHHHHHHHHHHHHhcCC-CCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 010876 115 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQP-FLAPGDGPIVLVLAPTRELAVQIQQESTK 188 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~-~i~~a~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~~~vlvl~P~~~La~q~~~~~~~ 188 (498)
++++.|.+|+..++.... .++.||+|+|||.+.. .++..+.... ......+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 468899999999999988 9999999999996533 3444441100 00112467899999999999999888887
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.53 E-value=7.6e-07 Score=79.28 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=74.1
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
...+..|..++..++...-+++.+|.|+|||+.++..++..+... .-.+++|+-|..+..+. +.-+....
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~----lGflpG~~ 72 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGED----LGFLPGDL 72 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT--------SS----
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccc----cccCCCCH
Confidence 456889999999999777899999999999999888888887762 35578888887643211 11000000
Q ss_pred CceEEE----E---eCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHH
Q 010876 194 KIKSTC----I---YGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 266 (498)
Q Consensus 194 ~~~~~~----~---~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~ 266 (498)
.-+... + ............+.....|-+.....+ + ...+. -.+||+|||+.+. ..+++.++.
T Consensus 73 ~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i-----R-Grt~~-~~~iIvDEaQN~t----~~~~k~ilT 141 (205)
T PF02562_consen 73 EEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI-----R-GRTFD-NAFIIVDEAQNLT----PEELKMILT 141 (205)
T ss_dssp -----TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG-----T-T--B--SEEEEE-SGGG------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh-----c-Ccccc-ceEEEEecccCCC----HHHHHHHHc
Confidence 000000 0 000001112222233334555543222 1 11232 2799999999875 678889999
Q ss_pred hcCCCCcEEEEcCC
Q 010876 267 QIRPDRQTLYWSAT 280 (498)
Q Consensus 267 ~~~~~~~~i~~SAT 280 (498)
++..+.+++++--.
T Consensus 142 R~g~~skii~~GD~ 155 (205)
T PF02562_consen 142 RIGEGSKIIITGDP 155 (205)
T ss_dssp TB-TT-EEEEEE--
T ss_pred ccCCCcEEEEecCc
Confidence 98888877765443
No 181
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.46 E-value=5.5e-07 Score=78.62 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=73.6
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhCCC--CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec--cccccCCCCC--CCEEE
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATD--VAARGLDVKD--VKYVI 411 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~~~--~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~Gldi~~--v~~VI 411 (498)
++.+|||++|....+.+.+.++.... ...++.. +..++..+++.|+.++-.||+++. .+.+|+|+++ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 46899999999999999999986532 1223332 255778899999999999999998 9999999997 77899
Q ss_pred EcCCCC----C--------------------------hhHHHHhhcccccCCCcceEEEEeccc
Q 010876 412 NYDFPG----S--------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA 445 (498)
Q Consensus 412 ~~~~p~----s--------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 445 (498)
...+|. + .....|.+||+-|...+--++++++..
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 888774 1 122348899999997776666666654
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.42 E-value=4.3e-06 Score=75.09 Aligned_cols=151 Identities=21% Similarity=0.354 Sum_probs=97.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhc---CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010876 94 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 170 (498)
Q Consensus 94 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~---~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 170 (498)
.|+....|++++-.+.. + .-+++.|.+....+.+ +++.+.+.-||.|||.+ ++|++..+..+. ..-+.
T Consensus 4 ~w~p~~~P~wLl~E~e~-~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-N-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHHc-C-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEEE
Confidence 46666778888766642 2 4799999999988875 57899999999999987 788888887642 34577
Q ss_pred EEcCcHHHHHHHHHHHHH-hcCCCCceEEEE--eCCCCCch----hH----HHHhcCCcEEEcChHHHHHHHhcc-----
Q 010876 171 VLAPTRELAVQIQQESTK-FGASSKIKSTCI--YGGVPKGP----QV----RDLQKGVEIVIATPGRLIDMLESH----- 234 (498)
Q Consensus 171 vl~P~~~La~q~~~~~~~-~~~~~~~~~~~~--~~~~~~~~----~~----~~~~~~~~Ivi~T~~~l~~~l~~~----- 234 (498)
+++|. +|..|..+.+.. ++.-.+-++..+ .-...... .. +.......|+++||+.++.+.-..
T Consensus 75 viVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~ 153 (229)
T PF12340_consen 75 VIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQ 153 (229)
T ss_pred EEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHH
Confidence 77774 799999888874 443333333221 12222111 11 123345679999999976653211
Q ss_pred --Cc-----------ccccccEEEeccchhhhc
Q 010876 235 --NT-----------NLRRVTYLVLDEADRMLD 254 (498)
Q Consensus 235 --~~-----------~l~~~~~vI~DE~h~~~~ 254 (498)
.. .+.....=|+||+|.++.
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 10 122334568888887664
No 183
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.36 E-value=0.00011 Score=77.66 Aligned_cols=68 Identities=21% Similarity=0.170 Sum_probs=53.6
Q ss_pred CCCcHHHHHHHHHhhcC-CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 114 FEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
..+++.|.+|+..++.. ..+++.+|+|+|||.+..- ++.++... +.+||+++||..-+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~-ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVE-LIRQLVKR-------GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHH-HHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 46799999999999876 5688999999999976433 44444432 568999999999999888888763
No 184
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.22 E-value=3.6e-05 Score=77.61 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=65.0
Q ss_pred HHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 010876 107 EISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 186 (498)
Q Consensus 107 ~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~ 186 (498)
.+...++.+++.-|..|+.++|+..-.|+++|+|+|||.+..- ++.|+..+ ....|||++|+..-+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 4445677899999999999999999999999999999977444 44444443 2445999999998889999888
Q ss_pred HHhcCCCCceEEEEe
Q 010876 187 TKFGASSKIKSTCIY 201 (498)
Q Consensus 187 ~~~~~~~~~~~~~~~ 201 (498)
.+-+ ++|+-+.
T Consensus 475 h~tg----LKVvRl~ 485 (935)
T KOG1802|consen 475 HKTG----LKVVRLC 485 (935)
T ss_pred HhcC----ceEeeee
Confidence 8754 5555443
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.18 E-value=0.0001 Score=72.80 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=68.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 211 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (498)
-++|.+..|||||++++- ++..+. ....+..+++++++..|...+.+.+.+-...
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~-----~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQ-----NSEEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhh-----ccccCCceEEEEecchHHHHHHHHHhhhccc-------------------
Confidence 478899999999987544 344441 1123667899999999998888887654300
Q ss_pred HHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-------cHHHHHHHHHh
Q 010876 212 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-------FEPQIKKILSQ 267 (498)
Q Consensus 212 ~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-------~~~~~~~i~~~ 267 (498)
......+..+..+...+.........+++|||||||++.... ...++..+++.
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001223344444444333222345688999999999998731 24667777765
No 186
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.17 E-value=2.8e-05 Score=81.08 Aligned_cols=143 Identities=20% Similarity=0.199 Sum_probs=87.9
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCce
Q 010876 117 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 196 (498)
Q Consensus 117 ~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~ 196 (498)
.++|++|+..++.++-+++.+++|+|||++.. .++..+..... .....++++++||-.-|..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 37999999999999999999999999997632 23333332110 0113579999999888887777765533221110
Q ss_pred EEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHh------ccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCC
Q 010876 197 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE------SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 270 (498)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~------~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~ 270 (498)
. .......+-..|..+|+.... ....+...+++||+||+-++. ...+..+++.+++
T Consensus 224 -----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 -----------E---ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP 285 (586)
T ss_pred -----------h---hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC
Confidence 0 000111122344444332211 111223467999999999765 5567778888888
Q ss_pred CCcEEEEcCC
Q 010876 271 DRQTLYWSAT 280 (498)
Q Consensus 271 ~~~~i~~SAT 280 (498)
..++|++--.
T Consensus 286 ~~rlIlvGD~ 295 (586)
T TIGR01447 286 NTKLILLGDK 295 (586)
T ss_pred CCEEEEECCh
Confidence 8888877644
No 187
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.16 E-value=2.7e-05 Score=81.44 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=88.4
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 010876 116 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 195 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~ 195 (498)
..++|++|+..++.++-+++.+++|+|||++.. .++..+... ......++++++||..-|..+.+.+.......++
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~---~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQL---ADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHh---cCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 358999999999999899999999999997632 233333221 0112457899999998888888777653322211
Q ss_pred eEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHh------ccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcC
Q 010876 196 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE------SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 269 (498)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~------~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~ 269 (498)
. . ........-..|..+|+.... ....+.-.+++||+||+-++- ...+..++..++
T Consensus 229 ~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~ 290 (615)
T PRK10875 229 T-----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALP 290 (615)
T ss_pred c-----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcc
Confidence 0 0 000011112234333332211 111223456899999999764 566677888888
Q ss_pred CCCcEEEEcCC
Q 010876 270 PDRQTLYWSAT 280 (498)
Q Consensus 270 ~~~~~i~~SAT 280 (498)
+..++|++--.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 88888877654
No 188
>PRK10536 hypothetical protein; Provisional
Probab=98.13 E-value=0.0001 Score=67.72 Aligned_cols=142 Identities=15% Similarity=0.109 Sum_probs=81.1
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH----------
Q 010876 111 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV---------- 180 (498)
Q Consensus 111 ~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~---------- 180 (498)
.++...+..|...+..+.+..-+++.+++|+|||+.++..++..+... .-.++++.=|+.+..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 345567889999999988887899999999999998777666555432 1344666656543221
Q ss_pred -HHHHHHHHhcCCCCceEEEEeCCCCCchhHHHH-h-cCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc
Q 010876 181 -QIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-Q-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 257 (498)
Q Consensus 181 -q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~ 257 (498)
-..-++.-+...+.. +.+. .....+ . ....|-|.....+ . +. .+ +-++||+|||+.+.
T Consensus 129 eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l~ym----R-Gr-tl-~~~~vIvDEaqn~~---- 189 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPFAYM----R-GR-TF-ENAVVILDEAQNVT---- 189 (262)
T ss_pred HHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecHHHh----c-CC-cc-cCCEEEEechhcCC----
Confidence 111111111111000 0010 111111 1 1234555553222 1 11 23 33799999999875
Q ss_pred HHHHHHHHHhcCCCCcEEEE
Q 010876 258 EPQIKKILSQIRPDRQTLYW 277 (498)
Q Consensus 258 ~~~~~~i~~~~~~~~~~i~~ 277 (498)
..++..++..+..+.++|+.
T Consensus 190 ~~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 190 AAQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHHhhcCCCCEEEEe
Confidence 57788888888777776654
No 189
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.12 E-value=4.1e-05 Score=82.25 Aligned_cols=127 Identities=20% Similarity=0.145 Sum_probs=80.0
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 113 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 113 ~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
-..+++-|.+|+..+..++-+++.++.|+|||.+. -.++..+... +....+++++||-.-|..+.+..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e~~------ 388 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGEVT------ 388 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc-----CCCceEEEEeCchHHHHHHHHhc------
Confidence 35899999999999998888999999999999753 2334433331 01156888999987776544332
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc-----cCcccccccEEEeccchhhhcCCcHHHHHHHHHh
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-----HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 267 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~-----~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~ 267 (498)
+... .|..+++..... ........++||+||++++. ...+..+++.
T Consensus 389 -g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~ 439 (720)
T TIGR01448 389 -GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAA 439 (720)
T ss_pred -CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHh
Confidence 1100 111111111000 00112357899999999875 3455677777
Q ss_pred cCCCCcEEEEcCC
Q 010876 268 IRPDRQTLYWSAT 280 (498)
Q Consensus 268 ~~~~~~~i~~SAT 280 (498)
++...++|++--+
T Consensus 440 ~~~~~rlilvGD~ 452 (720)
T TIGR01448 440 LPDHARLLLVGDT 452 (720)
T ss_pred CCCCCEEEEECcc
Confidence 8777888876544
No 190
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.04 E-value=3.3e-05 Score=80.51 Aligned_cols=137 Identities=21% Similarity=0.267 Sum_probs=86.7
Q ss_pred CCCcHHHHHHHHHhh----cCCcEEEEcCCCchHHHHHHHHHHHHHhcCC-----------C--------C---------
Q 010876 114 FEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQP-----------F--------L--------- 161 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~-----------~--------~--------- 161 (498)
++|++.|...+..++ ..++.++..|||+|||++.+-..+.+..... . .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 378999998877765 4568999999999999775544443332111 0 0
Q ss_pred --CC----CCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCC--Cc--------------------------
Q 010876 162 --AP----GDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP--KG-------------------------- 207 (498)
Q Consensus 162 --~~----~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------------------- 207 (498)
.. -.-|++.|-.-|..-..|+.+++++..... +..++-.... ..
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~v--kmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~ 177 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRV--KMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCH 177 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCC--ceEEeecchhhccCHHHhhhhcchhhhhHHHhhccccccc
Confidence 00 014678888888888889999998875442 2222111100 00
Q ss_pred ------------------------------------hhHHHHhcCCcEEEcChHHHHHHHhccC--cccccccEEEeccc
Q 010876 208 ------------------------------------PQVRDLQKGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEA 249 (498)
Q Consensus 208 ------------------------------------~~~~~~~~~~~Ivi~T~~~l~~~l~~~~--~~l~~~~~vI~DE~ 249 (498)
-..+.+...++||+|-+..|++-..+.. ++|.+ .+||||||
T Consensus 178 f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEA 256 (945)
T KOG1132|consen 178 FYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEA 256 (945)
T ss_pred ccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEecc
Confidence 0012233346899999999988766654 44433 78999999
Q ss_pred hhhh
Q 010876 250 DRML 253 (498)
Q Consensus 250 h~~~ 253 (498)
|.|.
T Consensus 257 HNiE 260 (945)
T KOG1132|consen 257 HNIE 260 (945)
T ss_pred ccHH
Confidence 9765
No 191
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.03 E-value=1.3e-05 Score=80.24 Aligned_cols=65 Identities=28% Similarity=0.283 Sum_probs=51.8
Q ss_pred CCcHHHHHHHHHhhcCCc-EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 010876 115 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 187 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~-~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~ 187 (498)
.+.+-|..|+..+...++ +++.+|+|+|||..... ++.++..+ +.+|||++||.+-+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvE-iI~qlvk~-------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVE-IISQLVKQ-------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHH-HHHHHHHc-------CCeEEEEcCchHHHHHHHHHhc
Confidence 578899999999998866 78889999999987555 44555442 6789999999988888877543
No 192
>PF13245 AAA_19: Part of AAA domain
Probab=97.91 E-value=5.7e-05 Score=56.08 Aligned_cols=60 Identities=32% Similarity=0.354 Sum_probs=40.0
Q ss_pred HHHHhhcCCc-EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 010876 123 GWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 186 (498)
Q Consensus 123 ~i~~~l~~~~-~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~ 186 (498)
++...+++.+ +++.+|+|||||...+-.+...+... ... +.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~---~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR---ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh---cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4444444344 66699999999966444333333211 112 567999999999999988887
No 193
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.85 E-value=0.00028 Score=76.23 Aligned_cols=122 Identities=20% Similarity=0.158 Sum_probs=74.7
Q ss_pred CCCcHHHHHHHHHhhcC-CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 114 FEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
..+++-|.+|+..++.+ +-+++.++.|+|||.. +-.+...+.. .+..+++++||-.-|..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~-------~g~~V~~~ApTg~Aa~~L~~~------- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA-------AGYRVIGAALSGKAAEGLQAE------- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHhc-------
Confidence 47899999999998875 5589999999999975 3333333333 267799999997655544321
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhc-CCC
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPD 271 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~-~~~ 271 (498)
.++.. .|..++...+......+...++||+||+-.+.... +..++... ...
T Consensus 416 ~g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~----~~~Ll~~~~~~~ 467 (744)
T TIGR02768 416 SGIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQ----MARVLKEAEEAG 467 (744)
T ss_pred cCCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHHH----HHHHHHHHHhcC
Confidence 11111 12222221122233345678999999999876433 34444422 345
Q ss_pred CcEEEEc
Q 010876 272 RQTLYWS 278 (498)
Q Consensus 272 ~~~i~~S 278 (498)
.++|++-
T Consensus 468 ~kliLVG 474 (744)
T TIGR02768 468 AKVVLVG 474 (744)
T ss_pred CEEEEEC
Confidence 6666655
No 194
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.83 E-value=0.00035 Score=76.65 Aligned_cols=124 Identities=23% Similarity=0.148 Sum_probs=77.7
Q ss_pred CCCcHHHHHHHHHhhcCCc-EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 114 FEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~-~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
..+++-|.+|+..++.+++ +++.+..|+|||++ +-++...+.. .+.+|+.++||-.-|..+.+ .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHhh-------c
Confidence 4799999999999998665 78999999999985 3334333333 26779999999765544322 1
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhc-CCC
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPD 271 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~-~~~ 271 (498)
.++. -.|..+|..-.......+...++|||||+-++... .+..++... ...
T Consensus 410 tGi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~g 461 (988)
T PRK13889 410 SGIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADAG 461 (988)
T ss_pred cCcc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCCHH----HHHHHHHhhhhCC
Confidence 1111 11222332212223334667789999999977633 445555543 346
Q ss_pred CcEEEEcCC
Q 010876 272 RQTLYWSAT 280 (498)
Q Consensus 272 ~~~i~~SAT 280 (498)
.++|++--+
T Consensus 462 arvVLVGD~ 470 (988)
T PRK13889 462 AKVVLVGDP 470 (988)
T ss_pred CEEEEECCH
Confidence 667766544
No 195
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.74 E-value=0.00019 Score=75.75 Aligned_cols=139 Identities=21% Similarity=0.133 Sum_probs=85.9
Q ss_pred ccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCc-EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 96 RDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 96 ~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~-~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
....+.+.+.+. -...++.-|++|+..++..+| .++.+=+|+|||..... ++.-+.. .+++||+.+-
T Consensus 654 ~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~-------~gkkVLLtsy 721 (1100)
T KOG1805|consen 654 LSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA-------LGKKVLLTSY 721 (1100)
T ss_pred cccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH-------cCCeEEEEeh
Confidence 334455555553 234789999999999998877 67889999999976333 2333322 3778999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh-----------------HHHHhcCCcEEEcChHHHHHHHhccCcc
Q 010876 175 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ-----------------VRDLQKGVEIVIATPGRLIDMLESHNTN 237 (498)
Q Consensus 175 ~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~Ivi~T~~~l~~~l~~~~~~ 237 (498)
|..-+..+.-.+..+.. ...-+.......+. ...+.+...||.||-=-+.+. .+.
T Consensus 722 ThsAVDNILiKL~~~~i----~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p----lf~ 793 (1100)
T KOG1805|consen 722 THSAVDNILIKLKGFGI----YILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP----LFV 793 (1100)
T ss_pred hhHHHHHHHHHHhccCc----ceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch----hhh
Confidence 98777777666666532 22211111111122 223334567887774333222 223
Q ss_pred cccccEEEeccchhhhc
Q 010876 238 LRRVTYLVLDEADRMLD 254 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~ 254 (498)
.+.|++.|+|||-.+..
T Consensus 794 ~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQILL 810 (1100)
T ss_pred ccccCEEEEcccccccc
Confidence 45789999999997663
No 196
>PRK04296 thymidine kinase; Provisional
Probab=97.65 E-value=0.00015 Score=64.76 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=24.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
.-.++.+|+|+|||+.++-.+ ..+.. .+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~-~~~~~-------~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRA-YNYEE-------RGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHH-HHHHH-------cCCeEEEEec
Confidence 346889999999998755433 33322 2567888866
No 197
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.00048 Score=69.12 Aligned_cols=138 Identities=21% Similarity=0.183 Sum_probs=70.7
Q ss_pred EEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC----ceEEEEeCCCCCc---
Q 010876 135 GIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK----IKSTCIYGGVPKG--- 207 (498)
Q Consensus 135 ~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~----~~~~~~~~~~~~~--- 207 (498)
..++||||||++..-.++..... + -...|+.|....+.+.....+. .... ..-...+++....
T Consensus 2 f~matgsgkt~~ma~lil~~y~k------g-yr~flffvnq~nilekt~~nft---d~~s~kylf~e~i~~~d~~i~ikk 71 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK------G-YRNFLFFVNQANILEKTKLNFT---DSVSSKYLFSENININDENIEIKK 71 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh------c-hhhEEEEecchhHHHHHHhhcc---cchhhhHhhhhhhhcCCceeeeee
Confidence 45789999998755444444332 1 2336777766555444332221 1100 0000011111000
Q ss_pred -hhHHHHhcCCcEEEcChHHHHHHHhccCc------cccccc-EEEeccchhhhcCC-------------cHHHHHHHHH
Q 010876 208 -PQVRDLQKGVEIVIATPGRLIDMLESHNT------NLRRVT-YLVLDEADRMLDMG-------------FEPQIKKILS 266 (498)
Q Consensus 208 -~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~------~l~~~~-~vI~DE~h~~~~~~-------------~~~~~~~i~~ 266 (498)
...........|+++|.+.|...+.+.+- ++.+.. +++-||+|++-... |...+...+.
T Consensus 72 vn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~ 151 (812)
T COG3421 72 VNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE 151 (812)
T ss_pred ecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh
Confidence 00111334578999999998877655332 233444 46779999986421 2222211121
Q ss_pred hcCCCCcEEEEcCCCcH
Q 010876 267 QIRPDRQTLYWSATWPK 283 (498)
Q Consensus 267 ~~~~~~~~i~~SAT~~~ 283 (498)
-.++--++.+|||.|.
T Consensus 152 -~nkd~~~lef~at~~k 167 (812)
T COG3421 152 -QNKDNLLLEFSATIPK 167 (812)
T ss_pred -cCCCceeehhhhcCCc
Confidence 2355667889999984
No 198
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.61 E-value=0.0013 Score=72.71 Aligned_cols=124 Identities=19% Similarity=0.120 Sum_probs=76.8
Q ss_pred CCCcHHHHHHHHHhhc-CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 114 FEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~-~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
..+++-|.+|+..+.. ++-+++.++.|+|||++ +-++...+.. .+..|+.++||-.-|..+.+.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~-------~G~~V~g~ApTgkAA~~L~e~------- 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA-------AGYRVVGGALAGKAAEGLEKE------- 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEcCcHHHHHHHHHh-------
Confidence 4799999999998865 34589999999999976 3334444333 367799999996665444321
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcC-CC
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-PD 271 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~-~~ 271 (498)
.++.. .|..+|..........+..-++|||||+.++. ...+..++.... ..
T Consensus 445 ~Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~g 496 (1102)
T PRK13826 445 AGIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRAG 496 (1102)
T ss_pred hCCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhcC
Confidence 12211 12222211111222345667899999999775 344555565553 45
Q ss_pred CcEEEEcCC
Q 010876 272 RQTLYWSAT 280 (498)
Q Consensus 272 ~~~i~~SAT 280 (498)
.++|++--+
T Consensus 497 arvVLVGD~ 505 (1102)
T PRK13826 497 AKLVLVGDP 505 (1102)
T ss_pred CEEEEECCH
Confidence 677766654
No 199
>PRK08181 transposase; Validated
Probab=97.56 E-value=0.0014 Score=61.63 Aligned_cols=122 Identities=18% Similarity=0.135 Sum_probs=68.0
Q ss_pred CcHHHHHHHH----HhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 010876 116 PTPIQAQGWP----MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 191 (498)
Q Consensus 116 ~~~~Q~~~i~----~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~ 191 (498)
+.+.|..++. ++..++++++++|+|+|||..+.. +...+.. .+..|+|+. ..+|..++......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~-------~g~~v~f~~-~~~L~~~l~~a~~~--- 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIE-------NGWRVLFTR-TTDLVQKLQVARRE--- 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHH-------cCCceeeee-HHHHHHHHHHHHhC---
Confidence 3445555542 345778899999999999965333 3333333 144565543 45565554322100
Q ss_pred CCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc-HHHHHHHHHhcCC
Q 010876 192 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIRP 270 (498)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~-~~~~~~i~~~~~~ 270 (498)
.+.+.++.. +.++++||+||++......+ ...+-.++.....
T Consensus 156 ------------------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~ 198 (269)
T PRK08181 156 ------------------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYE 198 (269)
T ss_pred ------------------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh
Confidence 111122221 34678999999997654332 3355566655444
Q ss_pred CCcEEEEcCCCcHHHH
Q 010876 271 DRQTLYWSATWPKEVE 286 (498)
Q Consensus 271 ~~~~i~~SAT~~~~~~ 286 (498)
...+|+.|-..+.+..
T Consensus 199 ~~s~IiTSN~~~~~w~ 214 (269)
T PRK08181 199 RRSILITANQPFGEWN 214 (269)
T ss_pred CCCEEEEcCCCHHHHH
Confidence 4567777766655443
No 200
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.54 E-value=0.00096 Score=63.39 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=85.4
Q ss_pred CCCCCCcHHHHHHHHHhhcCCc--EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH----H
Q 010876 111 AGFFEPTPIQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ----Q 184 (498)
Q Consensus 111 ~~~~~~~~~Q~~~i~~~l~~~~--~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~----~ 184 (498)
.|+...+..|.-|+..++.-.- +.+.++-|+|||+.++.+.+.+....+ .-.++||.=|+..+-+.+- .
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-----~y~KiiVtRp~vpvG~dIGfLPG~ 298 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-----RYRKIIVTRPTVPVGEDIGFLPGT 298 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-----hhceEEEecCCcCcccccCcCCCc
Confidence 4666677789999999886543 788899999999999988888887643 2445777777765543210 0
Q ss_pred HHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccc----------cEEEeccchhhhc
Q 010876 185 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRV----------TYLVLDEADRMLD 254 (498)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~----------~~vI~DE~h~~~~ 254 (498)
+-+++.+..+ ...+..+-+.+.. =++.+.+...+.+..+.+..+ .+||+|||+.+-
T Consensus 299 eEeKm~PWmq----------~i~DnLE~L~~~~---~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT- 364 (436)
T COG1875 299 EEEKMGPWMQ----------AIFDNLEVLFSPN---EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT- 364 (436)
T ss_pred hhhhccchHH----------HHHhHHHHHhccc---ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC-
Confidence 0000000000 0000001111110 112333444444333222211 589999999875
Q ss_pred CCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 255 MGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
..+++.|+.+..+..+++++.
T Consensus 365 ---pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 ---PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ---HHHHHHHHHhccCCCEEEEcC
Confidence 778899999998888777654
No 201
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.52 E-value=0.0078 Score=71.60 Aligned_cols=236 Identities=12% Similarity=0.176 Sum_probs=126.2
Q ss_pred CCcHHHHHHHHHhhcCC--cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 115 EPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~--~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
.+++-|.+|+..++... -.++.++.|+|||.+ +-.++..+.. .+..|++++||-.-+.++.+........
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~-------~G~~V~~lAPTgrAA~~L~e~~g~~A~T 500 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE-------QGYEIQIITAGSLSAQELRQKIPRLAST 500 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHhcchhhh
Confidence 68899999999988764 488999999999975 3333333333 3678999999987666655442211000
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhc-CCC
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPD 271 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~-~~~ 271 (498)
.......+.. ..-..|...|. .....+...++|||||+.++. ...+..++... +.+
T Consensus 501 -------------i~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 501 -------------FITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred -------------HHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 0000111111 11122222232 223335677899999999876 44556666554 467
Q ss_pred CcEEEEcCCC--c----HHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhc-CCCeEEEE
Q 010876 272 RQTLYWSATW--P----KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIF 344 (498)
Q Consensus 272 ~~~i~~SAT~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~vlIf 344 (498)
.++|++--+- + ..+..++.........+. .... ....+ .+.......+...+.+.+..+. ...+++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~-~i~r--q~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWV-DTKQ--QKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHCCCcEEEee-cccc--cCcce--eeeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 7888777551 1 233333333221111111 1111 01111 1222233344455555555544 33468999
Q ss_pred eCCcccHHHHHHHHhh----CC------CCeEEe-cCCCCHHHHHHHHHHHhcC
Q 010876 345 MDTKKGCDQITRQLRM----DG------WPALSI-HGDKSQAERDWVLSEFKAG 387 (498)
Q Consensus 345 ~~s~~~~~~l~~~L~~----~~------~~~~~l-h~~~~~~~r~~~~~~f~~g 387 (498)
..+..+...|...++. .| +....+ -..++..++... ..|+.|
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 9998888888777653 22 222223 235666666633 555544
No 202
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.52 E-value=0.00074 Score=56.82 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=53.6
Q ss_pred EecCCCCHHHHHHHHHHHhcCC-CcEEEEeccccccCCCCC--CCEEEEcCCCCC-------------------------
Q 010876 367 SIHGDKSQAERDWVLSEFKAGK-SPIMTATDVAARGLDVKD--VKYVINYDFPGS------------------------- 418 (498)
Q Consensus 367 ~lh~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldi~~--v~~VI~~~~p~s------------------------- 418 (498)
++.-..+..+...+++.|++.. ..||+++.-+.+|+|+|+ ++.||...+|..
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 3444455556788888998654 379999977999999997 567887776641
Q ss_pred ------hhHHHHhhcccccCCCcceEEEEec
Q 010876 419 ------LEDYVHRIGRTGRAGAKGTAYTFFT 443 (498)
Q Consensus 419 ------~~~~~Qr~GR~~R~g~~g~~~~~~~ 443 (498)
.....|.+||+-|...+--++++++
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 2334588899999866644555554
No 203
>PRK06526 transposase; Provisional
Probab=97.51 E-value=0.00029 Score=65.73 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=60.8
Q ss_pred HHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010876 125 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 204 (498)
Q Consensus 125 ~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~ 204 (498)
.++..+++++++||+|+|||..+...+ ..+.. .+.+++++.. .+|..+..... .
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~-~~a~~-------~g~~v~f~t~-~~l~~~l~~~~----~------------- 146 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLG-IRACQ-------AGHRVLFATA-AQWVARLAAAH----H------------- 146 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHH-HHHHH-------CCCchhhhhH-HHHHHHHHHHH----h-------------
Confidence 445567899999999999997644322 33322 1445655433 23443332110 0
Q ss_pred CCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc-HHHHHHHHHhcCCCCcEEEEcCCCcH
Q 010876 205 PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIRPDRQTLYWSATWPK 283 (498)
Q Consensus 205 ~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~ 283 (498)
. .+... .+. .+.++++||+||+|....... ...+..++........+|+.|...+.
T Consensus 147 ----------~------~~~~~---~l~----~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~ 203 (254)
T PRK06526 147 ----------A------GRLQA---ELV----KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFG 203 (254)
T ss_pred ----------c------CcHHH---HHH----HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHH
Confidence 0 01111 111 134578999999997643221 23455555544344568888877665
Q ss_pred HH
Q 010876 284 EV 285 (498)
Q Consensus 284 ~~ 285 (498)
..
T Consensus 204 ~w 205 (254)
T PRK06526 204 RW 205 (254)
T ss_pred HH
Confidence 43
No 204
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.50 E-value=1e-05 Score=83.83 Aligned_cols=79 Identities=27% Similarity=0.383 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhc---CCCcEEEEecc
Q 010876 322 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA---GKSPIMTATDV 397 (498)
Q Consensus 322 ~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~---g~~~vLvaT~~ 397 (498)
..|...|...++.+. .+++|+||..-....+.+..++...+ ....+.|.....+|+.++++|+. .+..+|.+|..
T Consensus 614 ~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra 692 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRA 692 (696)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccc
Confidence 456666666666554 35699999999999999999999888 88999999999999999999983 46678899987
Q ss_pred cccc
Q 010876 398 AARG 401 (498)
Q Consensus 398 ~~~G 401 (498)
.+.|
T Consensus 693 ~g~g 696 (696)
T KOG0383|consen 693 GGLG 696 (696)
T ss_pred ccCC
Confidence 6554
No 205
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.0025 Score=63.05 Aligned_cols=130 Identities=18% Similarity=0.161 Sum_probs=69.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc-Cc-HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCch
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA-PT-RELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 208 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~-P~-~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (498)
+.+++++|||+|||++..-.+....... ...+.+|.++. .+ |.-+. +++..++...++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~----~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~---------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS----DDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVK---------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh----ccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceE----------
Confidence 3588999999999987544332222110 01234444443 33 33332 225555544444332
Q ss_pred hHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-cHHHHHHHHHhcCCC-CcEEEEcCCCc-HHH
Q 010876 209 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPD-RQTLYWSATWP-KEV 285 (498)
Q Consensus 209 ~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~~~~-~~~i~~SAT~~-~~~ 285 (498)
++-++..+...+.. +.++++||+|++.+..... ....+..++....+. -.++.+|||.. +.+
T Consensus 238 -----------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~ 302 (388)
T PRK12723 238 -----------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV 302 (388)
T ss_pred -----------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH
Confidence 12234444444432 3578999999999876331 224555556555433 46688999975 334
Q ss_pred HHHHHHH
Q 010876 286 EHLARQY 292 (498)
Q Consensus 286 ~~~~~~~ 292 (498)
.+....+
T Consensus 303 ~~~~~~~ 309 (388)
T PRK12723 303 KEIFHQF 309 (388)
T ss_pred HHHHHHh
Confidence 4455554
No 206
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.45 E-value=0.00059 Score=56.81 Aligned_cols=20 Identities=35% Similarity=0.242 Sum_probs=13.3
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
++.+++.|++|+|||.....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 45689999999999976433
No 207
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.44 E-value=0.00072 Score=57.03 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=58.5
Q ss_pred HHHHHHHHhhCCC---CeEEecCCCCHHHHHHHHHHHhcCCC---cEEEEecc--ccccCCCCC--CCEEEEcCCCC---
Q 010876 351 CDQITRQLRMDGW---PALSIHGDKSQAERDWVLSEFKAGKS---PIMTATDV--AARGLDVKD--VKYVINYDFPG--- 417 (498)
Q Consensus 351 ~~~l~~~L~~~~~---~~~~lh~~~~~~~r~~~~~~f~~g~~---~vLvaT~~--~~~Gldi~~--v~~VI~~~~p~--- 417 (498)
.+.++..++..+. ....+.-.....+...+++.|++..- .||+++.- +.+|||+++ ++.||....|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3445555554432 12223323333344678888886433 58888866 899999998 57888877764
Q ss_pred -C---------------------------hhHHHHhhcccccCCCcceEEEEecc
Q 010876 418 -S---------------------------LEDYVHRIGRTGRAGAKGTAYTFFTA 444 (498)
Q Consensus 418 -s---------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~ 444 (498)
+ .....|.+||+-|...+--++++++.
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 1 12335889999998766555555543
No 208
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.37 E-value=0.00088 Score=62.43 Aligned_cols=82 Identities=22% Similarity=0.402 Sum_probs=63.9
Q ss_pred HHHHHHhcCCCcEEEEeccccccCCCCC--------CCEEEEcCCCCChhHHHHhhcccccCCCc-ceEEEEeccc---c
Q 010876 379 WVLSEFKAGKSPIMTATDVAARGLDVKD--------VKYVINYDFPGSLEDYVHRIGRTGRAGAK-GTAYTFFTAA---N 446 (498)
Q Consensus 379 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~--------v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~-g~~~~~~~~~---~ 446 (498)
...+.|.+|+.+|+|.++++++|+.+.. -++-|.+.+|||....+|..||+.|.+|. .-.|.++..+ +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 3467899999999999999999998863 34677899999999999999999999885 4445555433 5
Q ss_pred HHHHHHHHHHHHHh
Q 010876 447 ARFAKELITILEEA 460 (498)
Q Consensus 447 ~~~~~~l~~~l~~~ 460 (498)
..++..+.+-|+..
T Consensus 132 ~Rfas~va~rL~sL 145 (278)
T PF13871_consen 132 RRFASTVARRLESL 145 (278)
T ss_pred HHHHHHHHHHHhhc
Confidence 56666666665544
No 209
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.35 E-value=0.0027 Score=53.53 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
++.+++.+++|+|||..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999753
No 210
>PRK14974 cell division protein FtsY; Provisional
Probab=97.31 E-value=0.004 Score=60.41 Aligned_cols=130 Identities=22% Similarity=0.289 Sum_probs=75.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCc---HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCch
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT---RELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 208 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~---~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (498)
-+++++++|+|||+.....+ ..+.. .+.+++++... ..-..|+......++ +.+.....+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~-------~g~~V~li~~Dt~R~~a~eqL~~~a~~lg----v~v~~~~~g~---- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK-------NGFSVVIAAGDTFRAGAIEQLEEHAERLG----VKVIKHKYGA---- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH-------cCCeEEEecCCcCcHHHHHHHHHHHHHcC----CceecccCCC----
Confidence 47888999999998643322 33332 24456665532 334455555444443 3322111111
Q ss_pred hHHHHhcCCcEEEcChHH-HHHHHhccCcccccccEEEeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHH
Q 010876 209 QVRDLQKGVEIVIATPGR-LIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVE 286 (498)
Q Consensus 209 ~~~~~~~~~~Ivi~T~~~-l~~~l~~~~~~l~~~~~vI~DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 286 (498)
.|.. +.+.+... ....+++|++|.+.++.. ......++.+.....++..++.++||...+..
T Consensus 206 --------------dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 206 --------------DPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred --------------CHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 1111 12222211 123567999999998863 33566777787777888889999999877666
Q ss_pred HHHHHHh
Q 010876 287 HLARQYL 293 (498)
Q Consensus 287 ~~~~~~~ 293 (498)
..++.|.
T Consensus 270 ~~a~~f~ 276 (336)
T PRK14974 270 EQAREFN 276 (336)
T ss_pred HHHHHHH
Confidence 6666654
No 211
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.26 E-value=0.00086 Score=65.08 Aligned_cols=123 Identities=20% Similarity=0.082 Sum_probs=73.9
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 010876 116 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 195 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~ 195 (498)
+++-|.+++.. ...+++|.|..|||||.+.+--++..+.... ....++|++++|+..|.++.+.+.........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 57789999888 6678999999999999985554444444321 23456999999999999999998875432110
Q ss_pred eEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCccc--ccccEEEeccch
Q 010876 196 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNL--RRVTYLVLDEAD 250 (498)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l--~~~~~vI~DE~h 250 (498)
.. ............-..+.|.|...+...+-+..... -.-.+-|+|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 00001111222335788999888766443321111 123467777777
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0095 Score=58.30 Aligned_cols=167 Identities=18% Similarity=0.220 Sum_probs=87.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC--cH-HHHHHHHHHHHHhcCCCCceEEEEeCCCCCc
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP--TR-ELAVQIQQESTKFGASSKIKSTCIYGGVPKG 207 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P--~~-~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (498)
+.+.+++|||+|||+....-+. .+.. .+.++.++.. .| .-+.|+.. +....++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~-------~GkkVglI~aDt~RiaAvEQLk~----yae~lgipv---------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHG-------KKKTVGFITTDHSRIGTVQQLQD----YVKTIGFEV---------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHH-------cCCcEEEEecCCcchHHHHHHHH----HhhhcCCcE----------
Confidence 4578999999999976544332 2322 2444554443 23 23344333 322222221
Q ss_pred hhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-cHHHHHHHHHhcCCCCcEEEEcCCCc-HHH
Q 010876 208 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWP-KEV 285 (498)
Q Consensus 208 ~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~ 285 (498)
+++.+|..+.+.+..... -.++++|++|-+-+..... ....+..++....+..-++.+|||.. ++.
T Consensus 300 -----------~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 300 -----------IAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred -----------EecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 223466666665543211 1257899999998755331 23444555555555555677998764 455
Q ss_pred HHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCC
Q 010876 286 EHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDT 347 (498)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s 347 (498)
...++.|..-++ -...+...++..+.-.++.++... +.|+..++..
T Consensus 368 ~~i~~~F~~~~i--------------dglI~TKLDET~k~G~iLni~~~~--~lPIsyit~G 413 (436)
T PRK11889 368 IEIITNFKDIHI--------------DGIVFTKFDETASSGELLKIPAVS--SAPIVLMTDG 413 (436)
T ss_pred HHHHHHhcCCCC--------------CEEEEEcccCCCCccHHHHHHHHH--CcCEEEEeCC
Confidence 667666643111 011222334445566666666653 3456555544
No 213
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.22 E-value=0.0091 Score=55.24 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=60.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 210 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (498)
..+++.+++|+|||..+. .+..++... +..++++ +..+|...+...+.. .
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~-------g~~v~~i-t~~~l~~~l~~~~~~---~------------------ 149 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLR-------GKSVLII-TVADIMSAMKDTFSN---S------------------ 149 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhc-------CCeEEEE-EHHHHHHHHHHHHhh---c------------------
Confidence 469999999999996533 344454442 4556665 333444333322210 0
Q ss_pred HHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHH-HHHHHHHhc-CCCCcEEEEcCCCcHHHH
Q 010876 211 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP-QIKKILSQI-RPDRQTLYWSATWPKEVE 286 (498)
Q Consensus 211 ~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~-~~~~i~~~~-~~~~~~i~~SAT~~~~~~ 286 (498)
+ .+.+.+.+. +.++++|||||++......+.. .+..|+... .....+++.|---+.++.
T Consensus 150 -------~---~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 150 -------E---TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred -------c---ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 0 122222222 4578899999999876544443 344455543 345677777766555443
No 214
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0025 Score=62.53 Aligned_cols=132 Identities=19% Similarity=0.171 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
+..+++++|||+|||+.....+....... ...++.++.. ...-.--.++++.|+...++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~------G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~----------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF------GASKVALLTT-DSYRIGGHEQLRIFGKILGVPVH----------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEec-ccccccHHHHHHHHHHHcCCceE-----------
Confidence 45689999999999987544333332221 1134444432 22211123444444433333322
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-cHHHHHHHHHhcCCCCcEEEEcCCCcHHH-HH
Q 010876 210 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWPKEV-EH 287 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~~-~~ 287 (498)
.+.+++.+...+. .+.+.++|+||++-+..... ....+..+.....+...++.+|||...+. .+
T Consensus 199 ----------~~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 199 ----------AVKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred ----------ecCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 2233333333332 24567899999997643221 22333333222233445788999985443 44
Q ss_pred HHHHHh
Q 010876 288 LARQYL 293 (498)
Q Consensus 288 ~~~~~~ 293 (498)
.++.|.
T Consensus 265 vi~~f~ 270 (374)
T PRK14722 265 VVQAYR 270 (374)
T ss_pred HHHHHH
Confidence 555554
No 215
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.20 E-value=0.0015 Score=71.10 Aligned_cols=152 Identities=18% Similarity=0.122 Sum_probs=92.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCC------CCC----CCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEE
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL------APG----DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTC 199 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~------~~~----~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~ 199 (498)
|+++++...+|.|||..-+...+...-+.... ..+ ...-+|||||. ++..||.+++.+..... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 46689999999999987555444332211100 011 12348999997 78899999999987654 66665
Q ss_pred EeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCc--------------c----ccccc--EEEeccchhhhcCCcHH
Q 010876 200 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--------------N----LRRVT--YLVLDEADRMLDMGFEP 259 (498)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~--------------~----l~~~~--~vI~DE~h~~~~~~~~~ 259 (498)
..|-...........-.+|||++|++.|..-+..... + |-.+. -|++|||+.+-.. ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess--sS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS--SS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--HH
Confidence 5553221111111123589999999999776643211 0 11111 2899999987653 45
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCcHHHH
Q 010876 260 QIKKILSQIRPDRQTLYWSATWPKEVE 286 (498)
Q Consensus 260 ~~~~i~~~~~~~~~~i~~SAT~~~~~~ 286 (498)
...+.+..+ +....-..|+|+-..+.
T Consensus 530 ~~a~M~~rL-~~in~W~VTGTPiq~Id 555 (1394)
T KOG0298|consen 530 AAAEMVRRL-HAINRWCVTGTPIQKID 555 (1394)
T ss_pred HHHHHHHHh-hhhceeeecCCchhhhh
Confidence 555555555 35566788999644443
No 216
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.09 E-value=0.011 Score=57.74 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=77.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
++.+.++||||.|||+.-.--+..+.... +.....||...|--.+ .+++++.|+.-.++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhh--HHHHHHHHHHHhCCce------------
Confidence 56789999999999976443333333111 1233355555553333 3455666655544433
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEcCCCc-HHHHH
Q 010876 210 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWP-KEVEH 287 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~ 287 (498)
.++-+|.-|...+. .+.++++|.+|=+-+-.. ......++.++....+..-.+.+|||.. .++.+
T Consensus 264 ---------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 264 ---------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred ---------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 34555655655544 356778999998875332 2234566666666555556688899974 44566
Q ss_pred HHHHHhc
Q 010876 288 LARQYLY 294 (498)
Q Consensus 288 ~~~~~~~ 294 (498)
....|..
T Consensus 331 i~~~f~~ 337 (407)
T COG1419 331 IIKQFSL 337 (407)
T ss_pred HHHHhcc
Confidence 6666644
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.09 E-value=0.0013 Score=55.09 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 178 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~L 178 (498)
+..+++.+|+|+|||..+.. ++..+... ...++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~-------~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP-------GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC-------CCCEEEECCEEcc
Confidence 45789999999999986333 22222221 1247777776543
No 218
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.06 E-value=0.0035 Score=58.29 Aligned_cols=59 Identities=8% Similarity=0.211 Sum_probs=39.0
Q ss_pred CcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCC---cHHHHHHHHHHhc
Q 010876 235 NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW---PKEVEHLARQYLY 294 (498)
Q Consensus 235 ~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~---~~~~~~~~~~~~~ 294 (498)
......++++|+||||.|.... ...+++.+........+++.+.-+ +..+..-..+|..
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrF 185 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRF 185 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcC
Confidence 3345677999999999988764 566777777776667777776664 3333444444443
No 219
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.05 E-value=0.0012 Score=59.18 Aligned_cols=54 Identities=26% Similarity=0.319 Sum_probs=36.7
Q ss_pred ccccEEEeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHH
Q 010876 239 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 292 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 292 (498)
+++++|++|-+-+.... .....+..++....+..-.+.+|||...+....+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 45789999999765422 2356677777777777788999999876655444444
No 220
>PRK08116 hypothetical protein; Validated
Probab=97.00 E-value=0.035 Score=52.42 Aligned_cols=109 Identities=19% Similarity=0.205 Sum_probs=59.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 211 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (498)
.+++.+++|+|||..+. ++.+.+... +..++++ +..+|...+...+.... .
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~-------~~~v~~~-~~~~ll~~i~~~~~~~~---------------~----- 166 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK-------GVPVIFV-NFPQLLNRIKSTYKSSG---------------K----- 166 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc-------CCeEEEE-EHHHHHHHHHHHHhccc---------------c-----
Confidence 49999999999997543 355555542 3445554 44455554443322100 0
Q ss_pred HHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-cHHHHHHHHHhc-CCCCcEEEEcCCCcHHHH
Q 010876 212 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVE 286 (498)
Q Consensus 212 ~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~ 286 (498)
.+...+.+. +.+.++|||||++...... ....+..++... ....++|+.|...|.++.
T Consensus 167 ----------~~~~~~~~~-------l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 167 ----------EDENEIIRS-------LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred ----------ccHHHHHHH-------hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 011112221 3467899999996432221 234455555543 355677877777666654
No 221
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.00 E-value=0.0028 Score=62.78 Aligned_cols=60 Identities=25% Similarity=0.282 Sum_probs=42.7
Q ss_pred CCcHHHHHHHHHh------hcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 010876 115 EPTPIQAQGWPMA------LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 182 (498)
Q Consensus 115 ~~~~~Q~~~i~~~------l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~ 182 (498)
+|++-|++++..+ .++..+++.++-|+|||+.. -.+...+.. .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~-------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS-------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc-------ccceEEEecchHHHHHhc
Confidence 3677899998888 56778999999999999852 223333322 356799999996555444
No 222
>PRK06921 hypothetical protein; Provisional
Probab=96.99 E-value=0.017 Score=54.34 Aligned_cols=45 Identities=22% Similarity=0.168 Sum_probs=27.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 181 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q 181 (498)
.+.++++.+++|+|||..+. ++...+... .+..++++.. .++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~------~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRK------KGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhh------cCceEEEEEH-HHHHHH
Confidence 35679999999999996532 344444431 1455666654 344443
No 223
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.96 E-value=0.0079 Score=59.66 Aligned_cols=73 Identities=15% Similarity=0.004 Sum_probs=44.4
Q ss_pred CCCCCcHHHHHHHHHhh----cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 010876 112 GFFEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 187 (498)
Q Consensus 112 ~~~~~~~~Q~~~i~~~l----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~ 187 (498)
.+...+|-|.+-...+. .+.+.++.+|+|+|||.+.+-.++.+....+. .-.++++.+-|..=.+....+++
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHHH
Confidence 34566777777654433 34579999999999998755555555555331 23456776666544444444444
Q ss_pred H
Q 010876 188 K 188 (498)
Q Consensus 188 ~ 188 (498)
+
T Consensus 89 ~ 89 (755)
T KOG1131|consen 89 R 89 (755)
T ss_pred H
Confidence 3
No 224
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.0054 Score=59.57 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=31.1
Q ss_pred CCcHHHHHHHHHhhcCC----cEEEEcCCCchHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMALKGR----DLIGIAETGSGKTLAYLLPAIVHVNA 157 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~----~~i~~a~TGsGKT~~~~l~~l~~~~~ 157 (498)
.++|||...|..+.... .+++.+|.|.|||..+.. +...+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcC
Confidence 45899999999887543 388999999999976544 3444443
No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.91 E-value=0.049 Score=54.93 Aligned_cols=128 Identities=22% Similarity=0.218 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHH-hcCCCCCCCCCCEEEEEc-Cc-HHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHV-NAQPFLAPGDGPIVLVLA-PT-RELAVQIQQESTKFGASSKIKSTCIYGGVPK 206 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~-~~~~~~~~~~~~~vlvl~-P~-~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (498)
++.+++.+|||+|||+.....+.... .. .+.+|.++. .+ +.-+ .+++..+....++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~--------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYRIGA---VEQLKTYAKIMGIPV--------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccHHHH---HHHHHHHHHHhCCce---------
Confidence 45688899999999976544333322 12 134455444 22 2212 233333332222222
Q ss_pred chhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcC-CcHHHHHHHHH-hcCCCCcEEEEcCCCcH-
Q 010876 207 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILS-QIRPDRQTLYWSATWPK- 283 (498)
Q Consensus 207 ~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~-~~~~~~~~i~~-~~~~~~~~i~~SAT~~~- 283 (498)
.++.++..+...+.. +.++++||+|.+-+.... .....+..++. ...+....+.+|||...
T Consensus 282 ------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 282 ------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred ------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 122344445454442 346799999998764322 12345555555 22344557889998754
Q ss_pred HHHHHHHHH
Q 010876 284 EVEHLARQY 292 (498)
Q Consensus 284 ~~~~~~~~~ 292 (498)
.+.+....|
T Consensus 346 ~l~~~~~~f 354 (424)
T PRK05703 346 DLKDIYKHF 354 (424)
T ss_pred HHHHHHHHh
Confidence 455555555
No 226
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.85 E-value=0.0028 Score=58.35 Aligned_cols=87 Identities=26% Similarity=0.349 Sum_probs=66.0
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCC-CCchhHHHHh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 164 GDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV-PKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 164 ~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
...|.+|||+.+-.-|..+...++.|.. -+..++-++.-- ...+++..+. ...+|.|+||+++..+++.+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 3578999999998888888888887741 113344444332 3455666665 368999999999999999999999999
Q ss_pred cEEEeccchh
Q 010876 242 TYLVLDEADR 251 (498)
Q Consensus 242 ~~vI~DE~h~ 251 (498)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998773
No 227
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.83 E-value=0.011 Score=67.73 Aligned_cols=62 Identities=24% Similarity=0.282 Sum_probs=44.8
Q ss_pred CCcHHHHHHHHHhhcC--CcEEEEcCCCchHHHHH--HHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 010876 115 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAY--LLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 182 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~--~~~i~~a~TGsGKT~~~--~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~ 182 (498)
.+++-|.+|+..++.. +-+++.+..|+|||++. ++.++..+.. ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHH
Confidence 7999999999999965 45899999999999763 2222222222 1356789999997666554
No 228
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.79 E-value=0.0076 Score=53.58 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=33.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
+++.+++|+|||..++--+...+.. +..++|++.. +-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--------g~~v~~~s~e-~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--------GEPGLYVTLE-ESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--------CCcEEEEECC-CCHHHHHHHHHHcC
Confidence 6889999999997654433333322 5668888653 56677777777664
No 229
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.74 E-value=0.018 Score=49.66 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=23.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 178 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~L 178 (498)
+++.+++|+|||..+.. ++..+.. .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~~-------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIAT-------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHHh-------cCCEEEEEECCcch
Confidence 67899999999976443 2223222 24557777654433
No 230
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.74 E-value=0.1 Score=53.87 Aligned_cols=210 Identities=14% Similarity=0.248 Sum_probs=122.0
Q ss_pred ccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcC-CeEEE-EcCCCc------------
Q 010876 241 VTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYN-PYKVI-IGSPDL------------ 306 (498)
Q Consensus 241 ~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~-~~~~~~------------ 306 (498)
++++.+|-|.++ . .++. ..+-+++.-+|+.+ +.++...++.. +..+. ......
T Consensus 527 lky~lL~pA~~f-----~----evv~---earavvLAGGTMeP-~~e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv~ 593 (821)
T KOG1133|consen 527 LKYMLLNPAKHF-----A----EVVL---EARAVVLAGGTMEP-VDELREQLFPGCPERISPFSCSHVIPPENILPLVVS 593 (821)
T ss_pred EEEEecCcHHHH-----H----HHHH---HhheeeecCCcccc-HHHHHHHhcccchhhccceecccccChhheeeeeec
Confidence 567877777763 2 2222 23457888899865 66666655542 10000 000000
Q ss_pred --ccccceeeeEeecchhhhHHHHHHHHHhh---cCCCeEEEEeCCcccHHHHHHHHhhCCCC-------eEEecCCCCH
Q 010876 307 --KANHAIRQHVDIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMDGWP-------ALSIHGDKSQ 374 (498)
Q Consensus 307 --~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~vlIf~~s~~~~~~l~~~L~~~~~~-------~~~lh~~~~~ 374 (498)
.....+...+........+..|...+..+ .+ +-+++|.+|......+.+.+++.|+- ...+-...+
T Consensus 594 ~gpsg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~- 671 (821)
T KOG1133|consen 594 SGPSGQPLEFTFETRESPEMIKDLGSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT- 671 (821)
T ss_pred cCCCCCceEEEeeccCChHHHHHHHHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc-
Confidence 11112233333334444455555444432 34 45999999999999998888866532 122222222
Q ss_pred HHHHHHHHHHh----cCCCcEEEEe--ccccccCCCCC--CCEEEEcCCCCC----------------------------
Q 010876 375 AERDWVLSEFK----AGKSPIMTAT--DVAARGLDVKD--VKYVINYDFPGS---------------------------- 418 (498)
Q Consensus 375 ~~r~~~~~~f~----~g~~~vLvaT--~~~~~Gldi~~--v~~VI~~~~p~s---------------------------- 418 (498)
-+.+++.|. .|.-.+|+|. .-+++|||+.+ .+.|+-.++|..
T Consensus 672 --~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~y 749 (821)
T KOG1133|consen 672 --VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELY 749 (821)
T ss_pred --HHHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHH
Confidence 345666665 4555688776 77899999987 677887777651
Q ss_pred ----hhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHhhhcCCCC
Q 010876 419 ----LEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPP 477 (498)
Q Consensus 419 ----~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~ 477 (498)
+...-|.||||-|.-++-.++++++.. +.+...+ .+|.|+.+......|
T Consensus 750 EnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R---Y~~p~~R-------KLp~WI~~~v~s~~~ 802 (821)
T KOG1133|consen 750 ENLCMKAVNQSIGRAIRHRKDYASIYLLDKR---YARPLSR-------KLPKWIRKRVHSKAG 802 (821)
T ss_pred HHHHHHHHHHHHHHHHhhhccceeEEEehhh---hcCchhh-------hccHHHHhHhccccC
Confidence 112339999999998887888887653 2222222 568888776665544
No 231
>PRK08727 hypothetical protein; Validated
Probab=96.70 E-value=0.015 Score=53.68 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=28.3
Q ss_pred ccccEEEeccchhhhcCC-cHHHHHHHHHhcC-CCCcEEEEcCCCcHHHH
Q 010876 239 RRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEVE 286 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~ 286 (498)
.++++||+||+|.+.... ....+-.++.... ...++|+.|...|.+..
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~ 141 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLA 141 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhh
Confidence 456789999999876432 2233344444433 34456666666666553
No 232
>PHA02533 17 large terminase protein; Provisional
Probab=96.66 E-value=0.014 Score=60.47 Aligned_cols=149 Identities=13% Similarity=0.027 Sum_probs=83.8
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
..|.|+|.+.+..+..++-.++..+=..|||.+....++...... .+..+++++|+..-|..+.+.++......
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 378999999998876566667888899999987664444444332 25689999999999988888777543221
Q ss_pred C--ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCC-
Q 010876 194 K--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP- 270 (498)
Q Consensus 194 ~--~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~- 270 (498)
. +....... ......+.++..|.+.|.+. ....=.+++++|+||+|.+.+. ...+..+...+..
T Consensus 132 P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~~--~e~~~ai~p~lasg 198 (534)
T PHA02533 132 PDFLQPGIVEW----NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPNF--IDFWLAIQPVISSG 198 (534)
T ss_pred HHHhhcceeec----CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCCH--HHHHHHHHHHHHcC
Confidence 1 01000000 00111123444554444210 1111224568999999976542 3333334333322
Q ss_pred -CCcEEEEcCCC
Q 010876 271 -DRQTLYWSATW 281 (498)
Q Consensus 271 -~~~~i~~SAT~ 281 (498)
..+++.+|.+.
T Consensus 199 ~~~r~iiiSTp~ 210 (534)
T PHA02533 199 RSSKIIITSTPN 210 (534)
T ss_pred CCceEEEEECCC
Confidence 23455555553
No 233
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0063 Score=58.83 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.8
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
++|+.+|+|+|||..+.+
T Consensus 50 SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 50 SMILWGPPGTGKTTLARL 67 (436)
T ss_pred eeEEECCCCCCHHHHHHH
Confidence 699999999999987655
No 234
>PRK06893 DNA replication initiation factor; Validated
Probab=96.65 E-value=0.0098 Score=54.85 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=28.7
Q ss_pred ccccEEEeccchhhhcC-CcHHHHHHHHHhcCC-CCcEEEEcCCCcH
Q 010876 239 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIRP-DRQTLYWSATWPK 283 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~~-~~~~i~~SAT~~~ 283 (498)
.++++||+||+|.+... .+...+..++..... ..+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 46789999999987633 234455555555543 3456677776543
No 235
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.21 Score=51.07 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=63.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc-C-cHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA-P-TRELAVQIQQESTKFGASSKIKSTCIYGGVPK 206 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~-P-~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (498)
.++.+.++++||+|||+.+...+....... .+.++.++. . .+.-+ .+++..+....++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~------~gkkVaLIdtDtyRigA---~EQLk~ya~iLgv~v~~------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH------APRDVALVTTDTQRVGG---REQLHSYGRQLGIAVHE------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCceEEEecccccccH---HHHHHHhhcccCceeEe-------
Confidence 356688999999999976543222222211 123344443 2 23322 23344443333322211
Q ss_pred chhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-cHHHHHHHHHhcCCCCcEEEEcCCCc-HH
Q 010876 207 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWP-KE 284 (498)
Q Consensus 207 ~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~-~~ 284 (498)
+.+++.+...+.. +.++++||||.+-+..... ....+..+.. ......+++++++.. .+
T Consensus 413 --------------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~D 473 (559)
T PRK12727 413 --------------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSD 473 (559)
T ss_pred --------------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhH
Confidence 1233344444432 3467899999998653221 1223333322 223455677777764 34
Q ss_pred HHHHHHHH
Q 010876 285 VEHLARQY 292 (498)
Q Consensus 285 ~~~~~~~~ 292 (498)
+.+.++.|
T Consensus 474 l~eii~~f 481 (559)
T PRK12727 474 LDEVVRRF 481 (559)
T ss_pred HHHHHHHH
Confidence 55555554
No 236
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.64 E-value=0.053 Score=50.98 Aligned_cols=167 Identities=17% Similarity=0.197 Sum_probs=89.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC-cH--HHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP-TR--ELAVQIQQESTKFGASSKIKSTCIYGGVPK 206 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P-~~--~La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (498)
+..+.+++++|+|||..+...+. .+.. .+..+.++.. +. ....||....... ++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~-~l~~-------~~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~----------- 131 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW-QFHG-------KKKTVGFITTDHSRIGTVQQLQDYVKTI----GF----------- 131 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH-HHHH-------cCCeEEEEecCCCCHHHHHHHHHHhhhc----Cc-----------
Confidence 45689999999999986554332 2222 1344544443 22 4455554433322 22
Q ss_pred chhHHHHhcCCcEEE-cChHHHHHHHhccCcccccccEEEeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEcCCC-cH
Q 010876 207 GPQVRDLQKGVEIVI-ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATW-PK 283 (498)
Q Consensus 207 ~~~~~~~~~~~~Ivi-~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~-~~ 283 (498)
.+.. .+++.+.+.+..-. ...++++||+|-+=+.... .....+..++....++..++.+|||. .+
T Consensus 132 -----------~~~~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 132 -----------EVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred -----------eEEecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 2222 34555544443211 1236789999999876432 12344555555555665677899986 45
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCC
Q 010876 284 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDT 347 (498)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s 347 (498)
+....++.|..-.+ -.-.+...++..+.-.++.+.... +.|+..++..
T Consensus 200 d~~~~~~~f~~~~~--------------~~~I~TKlDet~~~G~~l~~~~~~--~~Pi~~it~G 247 (270)
T PRK06731 200 DMIEIITNFKDIHI--------------DGIVFTKFDETASSGELLKIPAVS--SAPIVLMTDG 247 (270)
T ss_pred HHHHHHHHhCCCCC--------------CEEEEEeecCCCCccHHHHHHHHH--CcCEEEEeCC
Confidence 66677776642111 111223334445566666666553 3456555544
No 237
>PRK05642 DNA replication initiation factor; Validated
Probab=96.64 E-value=0.014 Score=53.97 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=27.9
Q ss_pred ccccEEEeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEcCCCc
Q 010876 239 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWP 282 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~ 282 (498)
.+++++|+|++|.+... .+...+-.++..+......++++++.+
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 35678999999987543 345556677766554434455555543
No 238
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.63 E-value=0.028 Score=65.55 Aligned_cols=65 Identities=23% Similarity=0.206 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHHHhhcCC--cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 010876 114 FEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 182 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~--~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~ 182 (498)
..+++-|.+|+..++.+. -+++.+..|+|||+.. -.++..+... ....+..++.++||-.-|.++
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL---PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh---hcccCceEEEECCcHHHHHHH
Confidence 478999999999999764 5899999999999762 2233332210 111356789999997666544
No 239
>PRK12377 putative replication protein; Provisional
Probab=96.62 E-value=0.015 Score=54.06 Aligned_cols=107 Identities=15% Similarity=0.192 Sum_probs=57.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
..++++.+++|+|||..+.. +...+... +..++++ +..+|..++...+.. .
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~~-------g~~v~~i-~~~~l~~~l~~~~~~---~----------------- 151 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLAK-------GRSVIVV-TVPDVMSRLHESYDN---G----------------- 151 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHc-------CCCeEEE-EHHHHHHHHHHHHhc---c-----------------
Confidence 35799999999999965333 44444431 4445444 445666655443211 0
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc-HHHHHHHHHhcC-CCCcEEEEcCCCcHH
Q 010876 210 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIR-PDRQTLYWSATWPKE 284 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~-~~~~~~i~~~~~-~~~~~i~~SAT~~~~ 284 (498)
.+...+++ .+.++++|||||++......+ ...+..++.... ....+++.|---+.+
T Consensus 152 ------------~~~~~~l~-------~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~ 209 (248)
T PRK12377 152 ------------QSGEKFLQ-------ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEA 209 (248)
T ss_pred ------------chHHHHHH-------HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Confidence 00111112 146788999999965433222 334445555443 346677766544333
No 240
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.016 Score=55.77 Aligned_cols=143 Identities=20% Similarity=0.181 Sum_probs=72.9
Q ss_pred CCCcHHHHHHHHHhhc----CC---cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 010876 114 FEPTPIQAQGWPMALK----GR---DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 186 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~----~~---~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~ 186 (498)
..++|||..++..+.+ ++ -+++.+|.|.||+..+.. +...+....... .+ .|+. .+.+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC~~~~~--~~-----~c~~-------c~~~ 67 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLASGPDP--AA-----AQRT-------RQLI 67 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhCCCCCC--CC-----cchH-------HHHH
Confidence 5789999999988663 33 389999999999976444 444544422100 00 1111 1111
Q ss_pred HHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHH
Q 010876 187 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 266 (498)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~ 266 (498)
.. +...++.++......... .....|.|-..-.+.+.+.... .....+++|||++|.|.... ...+-+++.
T Consensus 68 ~~-g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~~A-aNaLLKtLE 138 (319)
T PRK08769 68 AA-GTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINRAA-CNALLKTLE 138 (319)
T ss_pred hc-CCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCHHH-HHHHHHHhh
Confidence 11 112233322111110000 0001233322222333333222 23467899999999987554 455666776
Q ss_pred hcCCCCcEEEEcCC
Q 010876 267 QIRPDRQTLYWSAT 280 (498)
Q Consensus 267 ~~~~~~~~i~~SAT 280 (498)
.-+++..+|+.|..
T Consensus 139 EPp~~~~fiL~~~~ 152 (319)
T PRK08769 139 EPSPGRYLWLISAQ 152 (319)
T ss_pred CCCCCCeEEEEECC
Confidence 66666666666654
No 241
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.59 E-value=0.01 Score=54.94 Aligned_cols=45 Identities=13% Similarity=0.205 Sum_probs=26.0
Q ss_pred cccEEEeccchhhhcC-CcHHHHHHHHHhcCC--CCcEEEEcCCCcHH
Q 010876 240 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRP--DRQTLYWSATWPKE 284 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~ 284 (498)
++++||+||+|.+... .+...+..++..... ..++++.|...|..
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQ 144 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence 3478999999988643 244455555554432 23555555544443
No 242
>PRK09183 transposase/IS protein; Provisional
Probab=96.57 E-value=0.029 Score=52.65 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=28.4
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 181 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q 181 (498)
+..+.++++.+|+|+|||..+...+. .+.. .+..++++. ..+|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~-~a~~-------~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGY-EAVR-------AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHH-HHHH-------cCCeEEEEe-HHHHHHH
Confidence 55678899999999999975443222 2222 255566654 3345443
No 243
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.56 E-value=0.015 Score=63.21 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
..|++-|.+|+.. ....++|.|..|||||.+..- =+.++.... .-...++|+|+.|+..|.++.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~-Ria~Li~~~---~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTH-RIAWLLSVE---NASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHH-HHHHHHHcC---CCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3689999999865 345799999999999987443 334444321 1124469999999999999999998864
No 244
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.019 Score=53.63 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=60.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCch
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 208 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (498)
++.++++.|++|+|||..+.. +...+.. .+..|+| +++.+|+.++...+..-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~-------~g~sv~f-~~~~el~~~Lk~~~~~~------------------- 155 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLK-------AGISVLF-ITAPDLLSKLKAAFDEG------------------- 155 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHH-------cCCeEEE-EEHHHHHHHHHHHHhcC-------------------
Confidence 677999999999999976444 3344443 2455555 56667877766655430
Q ss_pred hHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc-HHHHHHHHHhcCCCCcEEEEcCCCc
Q 010876 209 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIRPDRQTLYWSATWP 282 (498)
Q Consensus 209 ~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~ 282 (498)
...++|.+ .+.+++++||||+-......+ ...+..++.........++.|-...
T Consensus 156 -------------~~~~~l~~-------~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~ 210 (254)
T COG1484 156 -------------RLEEKLLR-------ELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNLSF 210 (254)
T ss_pred -------------chHHHHHH-------HhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence 00111222 145788999999986543322 2333344444433333455555433
No 245
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.53 E-value=0.014 Score=63.41 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
..|++-|.+|+... ...++|.|..|||||.+..- -+.++..... -....+|+|+-|+..|.++.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~-Ria~Li~~~~---v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVH-RIAWLMQVEN---ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHH-HHHHHHHcCC---CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 36999999998753 45799999999999987443 3344443211 123469999999999999999998864
No 246
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.51 E-value=0.076 Score=51.56 Aligned_cols=111 Identities=16% Similarity=0.219 Sum_probs=60.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCch
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 208 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (498)
.+.++++.|+||+|||..+. ++...+.. .+..|+++. ..+|..++... .+... .
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~-------~g~~V~y~t-~~~l~~~l~~~--~~~~~-------------~-- 235 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLD-------RGKSVIYRT-ADELIEILREI--RFNND-------------K-- 235 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHH-------CCCeEEEEE-HHHHHHHHHHH--Hhccc-------------h--
Confidence 35789999999999997533 34444443 255566654 34565444331 11000 0
Q ss_pred hHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc-HHHHHHHHHhcC-CCCcEEEEcCCCcHHHH
Q 010876 209 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIR-PDRQTLYWSATWPKEVE 286 (498)
Q Consensus 209 ~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~-~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~ 286 (498)
. ....+ ..+.++++||+|+++......| ...+..++.... ...++|+.|--.+.++.
T Consensus 236 ~-----------------~~~~~----~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 236 E-----------------LEEVY----DLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELL 294 (329)
T ss_pred h-----------------HHHHH----HHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 0 00000 1245778999999987654332 344555555442 34667766666555553
No 247
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.50 E-value=0.024 Score=60.02 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=24.6
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
.+++++||||+|+|....+ ..+.+++...+....+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEE
Confidence 4678999999999876543 33444555554445444444
No 248
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.47 E-value=0.024 Score=52.10 Aligned_cols=21 Identities=33% Similarity=0.257 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l 149 (498)
....+++.|++|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 345799999999999976443
No 249
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.44 E-value=0.0034 Score=71.12 Aligned_cols=93 Identities=26% Similarity=0.358 Sum_probs=77.0
Q ss_pred eEEEEeCCcccHHHHHHHHhhC-CCCeEEecCCCCH-----------HHHHHHHHHHhcCCCcEEEEeccccccCCCCCC
Q 010876 340 RILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQ-----------AERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 407 (498)
Q Consensus 340 ~vlIf~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~-----------~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v 407 (498)
..++||+....+..+.+.++.. .+.+..+.|.+.+ ..+.+++..|....+.+|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 4789999999999988888754 2334445554321 236688999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhcccccC
Q 010876 408 KYVINYDFPGSLEDYVHRIGRTGRA 432 (498)
Q Consensus 408 ~~VI~~~~p~s~~~~~Qr~GR~~R~ 432 (498)
+.|+.++.|.....|+|..||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999765
No 250
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.43 E-value=0.0099 Score=55.30 Aligned_cols=53 Identities=26% Similarity=0.438 Sum_probs=39.6
Q ss_pred CCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCc-EEEEcCCCchHHHHHHHHHHHHHhcC
Q 010876 86 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQ 158 (498)
Q Consensus 86 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~-~i~~a~TGsGKT~~~~l~~l~~~~~~ 158 (498)
..+|..+.+|+++++|+-+.+.+ .+.+. +++.+|||||||+. +.+++.+++.+
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~-------------------~~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELA-------------------ESPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHH-------------------hCCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 36788888999999988776632 12223 78889999999976 56678888775
No 251
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.42 E-value=0.0041 Score=54.75 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=28.0
Q ss_pred HHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 010876 125 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 182 (498)
Q Consensus 125 ~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~ 182 (498)
.++..++++++.+++|+|||..+.. +...+... +..++|+ +..+|...+
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~a-i~~~~~~~-------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVA-IANEAIRK-------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHH-HHHHHHHT-------T--EEEE-EHHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHH-HHHHhccC-------CcceeEe-ecCceeccc
Confidence 3345678899999999999976544 34444432 5556665 445665544
No 252
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.40 E-value=0.031 Score=60.88 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=27.4
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
.+++++||||+|+|.... ...|.+++...+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999997654 345556666665666556554
No 253
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.047 Score=58.38 Aligned_cols=131 Identities=17% Similarity=0.125 Sum_probs=70.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 210 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (498)
+-+.+++|||+|||+.+...+....... .+.++.++.--..-+ -..++++.+....++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~------G~kkV~lit~Dt~Ri-gA~eQL~~~a~~~gvpv------------- 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVARE------GADQLALLTTDSFRI-GALEQLRIYGRILGVPV------------- 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHc------CCCeEEEecCcccch-HHHHHHHHHHHhCCCCc-------------
Confidence 3478999999999987554332222221 123454444322110 01233444433333221
Q ss_pred HHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEcCCCcH-HHHHH
Q 010876 211 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPK-EVEHL 288 (498)
Q Consensus 211 ~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~ 288 (498)
.++.+|+.+.+.+.. +.++++|+||=+-+.... .....+..+.....+...++.+|||... .+.++
T Consensus 246 --------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i 313 (767)
T PRK14723 246 --------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV 313 (767)
T ss_pred --------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH
Confidence 223466666665553 446689999988865432 1234444444445566678889999743 34556
Q ss_pred HHHHh
Q 010876 289 ARQYL 293 (498)
Q Consensus 289 ~~~~~ 293 (498)
++.|.
T Consensus 314 ~~~f~ 318 (767)
T PRK14723 314 VHAYR 318 (767)
T ss_pred HHHHh
Confidence 66664
No 254
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.38 E-value=0.032 Score=56.23 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=35.0
Q ss_pred ccEEEeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHh
Q 010876 241 VTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 293 (498)
Q Consensus 241 ~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 293 (498)
.++||+|.+-+.... .....+..+.....++.-++.++|+...+....++.|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 488999999654322 23445556666666777788888888766656665543
No 255
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.36 E-value=0.062 Score=55.04 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=59.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 210 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (498)
..+++.||+|+|||..+.. +...+... ..+..++++. ..++..++...+..-
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~-----~~~~~v~yi~-~~~~~~~~~~~~~~~--------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEK-----NPNAKVVYVT-SEKFTNDFVNALRNN--------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHh-----CCCCeEEEEE-HHHHHHHHHHHHHcC---------------------
Confidence 3589999999999965333 44444432 1144566664 345554443333210
Q ss_pred HHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-cHHHHHHHHHhc-CCCCcEEEEcCCCcHHHHHH
Q 010876 211 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVEHL 288 (498)
Q Consensus 211 ~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~ 288 (498)
+.+.+.+. +.++++|||||+|.+.... ....+-.++..+ ....++++.|...|..+..+
T Consensus 201 ------------~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l 261 (450)
T PRK00149 201 ------------TMEEFKEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL 261 (450)
T ss_pred ------------cHHHHHHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 11222222 3357799999999876532 122333444333 23456666665555554433
No 256
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.35 E-value=0.014 Score=52.49 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.3
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
++++.+|+|+|||..+.+
T Consensus 52 h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCccchhHHHHH
Confidence 599999999999976544
No 257
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.34 E-value=0.017 Score=61.72 Aligned_cols=78 Identities=22% Similarity=0.194 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
..+++-|.+|+-.. ..++++.|..|||||.+.+- -+.++.... ...+..+|+++.++..|..+.+.+.+.....
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~-r~ayLl~~~---~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVA-RAGWLLARG---QAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHH-HHHHHHHhC---CCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 47999999998643 35689999999999987443 334444321 1124569999999999999999887654333
Q ss_pred CceE
Q 010876 194 KIKS 197 (498)
Q Consensus 194 ~~~~ 197 (498)
++.+
T Consensus 269 ~v~v 272 (684)
T PRK11054 269 DITA 272 (684)
T ss_pred CcEE
Confidence 3333
No 258
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.32 E-value=0.019 Score=61.88 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=70.3
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccc
Q 010876 327 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARG 401 (498)
Q Consensus 327 ~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~G 401 (498)
.+..++.....+.+++|.++++.-|.+.++.++. .++++..+||+++..+|..++..+.+|+.+|+|+|. .+...
T Consensus 299 a~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~ 378 (681)
T PRK10917 299 AALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD 378 (681)
T ss_pred HHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc
Confidence 3344455555667999999999988887777654 468899999999999999999999999999999994 56667
Q ss_pred CCCCCCCEEEE
Q 010876 402 LDVKDVKYVIN 412 (498)
Q Consensus 402 ldi~~v~~VI~ 412 (498)
+.+.++.+||.
T Consensus 379 v~~~~l~lvVI 389 (681)
T PRK10917 379 VEFHNLGLVII 389 (681)
T ss_pred chhcccceEEE
Confidence 78888888874
No 259
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.28 E-value=0.0034 Score=54.61 Aligned_cols=123 Identities=21% Similarity=0.200 Sum_probs=53.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHH
Q 010876 134 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 213 (498)
Q Consensus 134 i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (498)
++.|+-|-|||.+.-+. +..+... ...+++|.+|+.+-++.+.+.+.+-....+++...... ........
T Consensus 1 VltA~RGRGKSa~lGl~-~a~l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLA-AAALIQK------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHC-CCCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHH-HHHHHHh------cCceEEEecCCHHHHHHHHHHHHhhccccccccccccc---cccccccc
Confidence 57899999999764332 2222221 12469999999988877777665544333322200000 00000111
Q ss_pred hcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCC
Q 010876 214 QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 281 (498)
Q Consensus 214 ~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 281 (498)
.+...|-+..|+.+... ....+++|||||=.+. .+.+.+++.. ...++||.|.
T Consensus 71 ~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~----~~~vv~stTi 123 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRR----FPRVVFSTTI 123 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEB
T ss_pred cccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhh----CCEEEEEeec
Confidence 22456777777666332 2245899999999765 5666666543 3356777775
No 260
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.25 E-value=0.034 Score=60.08 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=68.9
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCc
Q 010876 116 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 195 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~ 195 (498)
+++-|.+++.. ...+++|.|..|||||.+.+--+ .++.... .....++|+|+.|+..|.++.+.+.+.....
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri-~~ll~~~---~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~-- 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKI-AYLIQNC---GYKARNIAAVTFTNKAAREMKERVAKTLGKG-- 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHH-HHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHhCcc--
Confidence 78889998865 34579999999999998744433 3444321 1124569999999999999999888754210
Q ss_pred eEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcc-c-ccccEEEeccchh
Q 010876 196 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTN-L-RRVTYLVLDEADR 251 (498)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~-l-~~~~~vI~DE~h~ 251 (498)
....+.|.|..+|...+.+.... + -.-.+-|+|+.+.
T Consensus 74 -------------------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 74 -------------------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred -------------------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 01357788888875544322100 0 0122456777763
No 261
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.25 E-value=0.026 Score=51.92 Aligned_cols=43 Identities=12% Similarity=0.247 Sum_probs=26.0
Q ss_pred cccEEEeccchhhhcCCcHHHHHHHHHhcCCCC-cEEEEcCCCcH
Q 010876 240 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR-QTLYWSATWPK 283 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~-~~i~~SAT~~~ 283 (498)
..++||+||+|.+.... ...+..++....... .+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 45689999999875433 444555555443333 34667776543
No 262
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.24 E-value=0.031 Score=56.75 Aligned_cols=112 Identities=13% Similarity=0.227 Sum_probs=61.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 210 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (498)
..+++.|++|+|||.... ++...+... +.+++++.. ..+..+....+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~-------~~~v~yi~~-~~f~~~~~~~l~~---------------------- 190 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES-------GGKILYVRS-ELFTEHLVSAIRS---------------------- 190 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc-------CCCEEEeeH-HHHHHHHHHHHhc----------------------
Confidence 358999999999996433 344444431 455777654 3444433332211
Q ss_pred HHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-cHHHHHHHHHhc-CCCCcEEEEcCCCcHHHHHH
Q 010876 211 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVEHL 288 (498)
Q Consensus 211 ~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~ 288 (498)
...+.+... +.++++|++||+|.+.... ....+..++..+ ....++|+.|.+.|.++..+
T Consensus 191 -----------~~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 191 -----------GEMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred -----------chHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 001112111 3467899999999886532 233444444433 24567777666667666544
Q ss_pred HHH
Q 010876 289 ARQ 291 (498)
Q Consensus 289 ~~~ 291 (498)
...
T Consensus 253 ~~r 255 (445)
T PRK12422 253 EER 255 (445)
T ss_pred HHH
Confidence 333
No 263
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.24 E-value=0.016 Score=52.88 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=60.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 211 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (498)
.+++.+++|+|||-. +-++...+... ..+.+|+|+... +......+.+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~-----~~~~~v~y~~~~-~f~~~~~~~~~~----------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ-----HPGKRVVYLSAE-EFIREFADALRD----------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH-----CTTS-EEEEEHH-HHHHHHHHHHHT-----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc-----cccccceeecHH-HHHHHHHHHHHc-----------------------
Confidence 489999999999963 33344444431 125567776543 444443333322
Q ss_pred HHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-cHHHHHHHHHhcC-CCCcEEEEcCCCcHHH
Q 010876 212 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEV 285 (498)
Q Consensus 212 ~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 285 (498)
...+.+.+. +..+++|+||++|.+.... +...+-.++..+. ...++|+.|...|.++
T Consensus 86 ----------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 ----------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ----------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ----------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 111122222 4577899999999987542 3344455555443 4567777777776654
No 264
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.22 E-value=0.017 Score=59.56 Aligned_cols=149 Identities=18% Similarity=0.159 Sum_probs=81.9
Q ss_pred HHHHHHHHHhh-----cC----CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 010876 118 PIQAQGWPMAL-----KG----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 188 (498)
Q Consensus 118 ~~Q~~~i~~~l-----~~----~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~ 188 (498)
|+|.-.+..++ .+ +.+++.-+=+-|||......++..+... ...+..+++++++++-|..+++.+.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 57777766655 12 2478888999999976544444444332 23467899999999999999998887
Q ss_pred hcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc--CcccccccEEEeccchhhhcCCcHHHHHHHHH
Q 010876 189 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 266 (498)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~--~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~ 266 (498)
+........... . ..... .....|.....+.+...+... ...=.+.+++|+||+|.+.+......++.-..
T Consensus 77 ~i~~~~~l~~~~-~-----~~~~~-~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 77 MIEASPELRKRK-K-----PKIIK-SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred HHHhChhhccch-h-----hhhhh-hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 754422111000 0 00000 001123322222222222221 12223568999999999876443444444444
Q ss_pred hcCCCCcEEEEc
Q 010876 267 QIRPDRQTLYWS 278 (498)
Q Consensus 267 ~~~~~~~~i~~S 278 (498)
. +++++++.+|
T Consensus 150 ~-r~~pl~~~IS 160 (477)
T PF03354_consen 150 A-RPNPLIIIIS 160 (477)
T ss_pred c-CCCceEEEEe
Confidence 4 3455555554
No 265
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.21 E-value=0.052 Score=55.28 Aligned_cols=92 Identities=23% Similarity=0.173 Sum_probs=57.3
Q ss_pred CCCCHH-HHHHHHHCCCCCCcH----HHHHHHHHhhc--CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010876 98 VGFPDY-VMQEISKAGFFEPTP----IQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 170 (498)
Q Consensus 98 ~~l~~~-~~~~l~~~~~~~~~~----~Q~~~i~~~l~--~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 170 (498)
.+..++ ++..|++..-.+++. +|.+-=..+.. ++-+++++..|||||.+++--+...+..... .-.+..||
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~--~l~~k~vl 264 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG--PLQAKPVL 264 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccc--ccccCceE
Confidence 345444 445666655555554 35544444443 4458999999999999876544444443321 11233399
Q ss_pred EEcCcHHHHHHHHHHHHHhcC
Q 010876 171 VLAPTRELAVQIQQESTKFGA 191 (498)
Q Consensus 171 vl~P~~~La~q~~~~~~~~~~ 191 (498)
|+.|++.+..-+...+=.++.
T Consensus 265 vl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EEcCcHHHHHHHHHhchhhcc
Confidence 999999998877777766653
No 266
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.19 E-value=0.044 Score=47.47 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=29.6
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCC
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 281 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 281 (498)
...+++|+||||.|.... ...+.+.+..-+....++++|..+
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECCh
Confidence 568899999999987654 566777777776666666666553
No 267
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.18 E-value=0.026 Score=57.98 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=18.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
.++++||.|+|||..+.+ +...+.
T Consensus 45 a~Lf~Gp~G~GKTT~Ari-lAk~Ln 68 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARI-IAKAVN 68 (507)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhc
Confidence 599999999999987655 334443
No 268
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.18 E-value=0.035 Score=66.26 Aligned_cols=62 Identities=23% Similarity=0.176 Sum_probs=44.5
Q ss_pred CCCcHHHHHHHHHhhcCC--cEEEEcCCCchHHHHHH---HHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 010876 114 FEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYL---LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 182 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~--~~i~~a~TGsGKT~~~~---l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~ 182 (498)
..+++.|.+|+..++.+. -+++.+..|+|||+... -++...+.. .+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHH
Confidence 479999999999998764 47888999999997631 222222222 266799999997665544
No 269
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.022 Score=57.58 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=15.0
Q ss_pred EEEEcCCCchHHHHHHH
Q 010876 133 LIGIAETGSGKTLAYLL 149 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l 149 (498)
+++.||.|+|||.++.+
T Consensus 43 ~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999987655
No 270
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.16 E-value=0.017 Score=57.77 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHH
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~ 148 (498)
-+.......+..+..++++++.+++|+|||..+.
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 3444556666777788999999999999998654
No 271
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.16 E-value=0.055 Score=57.08 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=23.5
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEE
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 277 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 277 (498)
..++++||||+|+|....+ ..+.+.+..-++...+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEEe
Confidence 4678999999999876543 3344455544444444443
No 272
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.10 E-value=0.067 Score=45.81 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=41.5
Q ss_pred cccccEEEeccchhhhcCCc--HHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHH
Q 010876 238 LRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 290 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 290 (498)
...+++||+||+-...+.++ ...+..+++..+....+|+.+-.+|+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998877653 456777888888888888888888888776654
No 273
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.10 E-value=0.025 Score=58.88 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=31.3
Q ss_pred cccccEEEeccchhhhcCC-cHHHHHHHHHhcC-CCCcEEEEcCCCcHHHH
Q 010876 238 LRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEVE 286 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~ 286 (498)
+.++++|||||+|.+.... ....+..++..+. ...++|+.|-..|.++.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3467899999999886543 2344445555543 35677776666666554
No 274
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.09 E-value=0.07 Score=53.85 Aligned_cols=109 Identities=14% Similarity=0.151 Sum_probs=56.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 211 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (498)
.+++.|++|+|||... .++...+... ..+..++++.. ..+..++...+..
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~-----~~~~~v~yi~~-~~~~~~~~~~~~~----------------------- 187 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN-----NPNAKVVYVSS-EKFTNDFVNALRN----------------------- 187 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh-----CCCCcEEEEEH-HHHHHHHHHHHHc-----------------------
Confidence 4889999999999753 3344444432 12455777643 3443333222211
Q ss_pred HHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-cHHHHHHHHHhc-CCCCcEEEEcCCCcHHHHH
Q 010876 212 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVEH 287 (498)
Q Consensus 212 ~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~ 287 (498)
+ +.+.+... +.++++|||||+|.+.... ....+-.++..+ ....++++.|...|..+..
T Consensus 188 ----~------~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 188 ----N------KMEEFKEK-------YRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred ----C------CHHHHHHH-------HHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh
Confidence 0 11222222 2346799999999876542 122333444333 2445666555545554443
No 275
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.08 E-value=0.04 Score=56.08 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=60.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 211 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (498)
.+++.|++|+|||... -++...+... ..+.+++++.+ .++..++...+..-.
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~-----~~~~~v~yv~~-~~f~~~~~~~l~~~~--------------------- 194 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESN-----FSDLKVSYMSG-DEFARKAVDILQKTH--------------------- 194 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHHHHhh---------------------
Confidence 4899999999999542 3344444321 12456777665 456555554443200
Q ss_pred HHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-cHHHHHHHHHhcC-CCCcEEEEcCCCcHHH
Q 010876 212 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEV 285 (498)
Q Consensus 212 ~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 285 (498)
+.+..+.. .+.++++||+||+|.+.... ....+..++..+. ...|+|+.|-..|...
T Consensus 195 -------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 -------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred -------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 01111111 13467899999999876432 2344445554443 3456666666666544
No 276
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.05 E-value=0.045 Score=57.96 Aligned_cols=148 Identities=18% Similarity=0.147 Sum_probs=84.9
Q ss_pred HHHCCCCCCcHHHHHHHHHhhcCC--cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 010876 108 ISKAGFFEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 185 (498)
Q Consensus 108 l~~~~~~~~~~~Q~~~i~~~l~~~--~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~ 185 (498)
+.....+++..-|.+.+..++..+ -+++.|+-|=|||.+.=+.+ ..+.... ....++|.+|+.+-++.+.+.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~-----~~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLA-----GSVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhc-----CCceEEEeCCCHHHHHHHHHH
Confidence 333334455555566666666654 48888999999997765544 2222211 034699999999888887777
Q ss_pred HHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHH
Q 010876 186 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 265 (498)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~ 265 (498)
+.+-....+++-.+....... ......+...|=+-+|.... ..-++||+|||=.+. .+.+.+++
T Consensus 281 a~~~l~~lg~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~ 344 (758)
T COG1444 281 AGKGLEFLGYKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLL 344 (758)
T ss_pred HHHhHHHhCCccccccccccc--eeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHH
Confidence 665444443332221111100 00000111224445554432 115789999998765 66777777
Q ss_pred HhcCCCCcEEEEcCCC
Q 010876 266 SQIRPDRQTLYWSATW 281 (498)
Q Consensus 266 ~~~~~~~~~i~~SAT~ 281 (498)
... +.++||.|+
T Consensus 345 ~~~----~rv~~sTTI 356 (758)
T COG1444 345 RRF----PRVLFSTTI 356 (758)
T ss_pred hhc----CceEEEeee
Confidence 654 358888886
No 277
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.05 E-value=0.11 Score=52.96 Aligned_cols=51 Identities=12% Similarity=0.329 Sum_probs=29.6
Q ss_pred cccEEEeccchhhhcCC-cHHHHHHHHHhcC-CCCcEEEEcCCCcHHHHHHHH
Q 010876 240 RVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEVEHLAR 290 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~ 290 (498)
++++|++||+|.+.+.. ....+..++..+. ...++++.|...|..+..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH
Confidence 56799999999876542 2233444443332 345666656566666555433
No 278
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.02 E-value=0.042 Score=56.09 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=24.5
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
..+.+++|+||+|.+....+ ..+.+.+...++...+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 45788999999998875443 33444455444444444443
No 279
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.035 Score=57.32 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=26.0
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
.+++++||||+|+|....+ ..+.+.+...++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999999876543 34445666555555555544
No 280
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.01 E-value=0.032 Score=52.58 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=30.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCC---CCCEEEEEcCcHHHHHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG---DGPIVLVLAPTRELAVQIQQES 186 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~---~~~~vlvl~P~~~La~q~~~~~ 186 (498)
.+++++++|+-|||... -.+...++..... .-|.+++-+|...-....+..+
T Consensus 62 p~lLivG~snnGKT~Ii----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred CceEEecCCCCcHHHHH----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 47999999999999852 2222233222211 2366677777665444444443
No 281
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.99 E-value=0.025 Score=57.00 Aligned_cols=136 Identities=13% Similarity=0.191 Sum_probs=75.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH-HHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 210 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~-La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (498)
-.++.+..|||||.+..+-++..+... ..+.+++++-++.. |...+...+.......++....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 367889999999988877777666663 12567898888875 66666666665433333321111111100 00
Q ss_pred HHHhcCCcEEEcCh-HHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcC--CCCcEEEEcCCCcH
Q 010876 211 RDLQKGVEIVIATP-GRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR--PDRQTLYWSATWPK 283 (498)
Q Consensus 211 ~~~~~~~~Ivi~T~-~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~ 283 (498)
.....+..|++..- +...++ .....++++.+|||..+... .+..++..++ .....+++|.+++.
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred EecCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 00111344555443 211111 11233689999999988533 4445544444 22224788888765
No 282
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.97 E-value=0.019 Score=61.63 Aligned_cols=70 Identities=19% Similarity=0.111 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.+++-|.+|+... ...++|.|..|||||.+.+-- +.++.... .-...++|+|+.|+.-|.++.+.+.+..
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~R-ia~Li~~~---~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNK-IAHLIRGC---GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHH-HHHHHHhc---CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4789999998753 457899999999999884443 34444321 1123469999999999999999888754
No 283
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.044 Score=54.92 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=34.5
Q ss_pred CCCCCcCCcccCC---CCHHHHHHHHHC---CCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHH
Q 010876 87 DVPKPVKSFRDVG---FPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 87 ~~~~~~~~f~~~~---l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~ 147 (498)
.+..|-..|++++ |..+..+.+..+ ..+.|--+-+-.+ ..-+.+++-+|+|+|||+.+
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi---~HVKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGI---KHVKGILLYGPPGTGKTLIA 273 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCc---cceeeEEEECCCCCChhHHH
Confidence 3456677888884 666666655432 1222222222111 23357999999999999864
No 284
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.059 Score=56.42 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=24.8
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
.+.+++||||+|+|.... ...+.+++...+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 467899999999887554 334555555554455455443
No 285
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.95 E-value=0.15 Score=53.32 Aligned_cols=70 Identities=10% Similarity=0.049 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHhh---cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 010876 115 EPTPIQAQGWPMAL---KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 191 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l---~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~ 191 (498)
-|.|.-.+-|+.+. ..+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-+.++.+.+.++..
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 34555455455444 44568889999999998755443333321 256799999999888888877776654
No 286
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.93 E-value=0.16 Score=50.91 Aligned_cols=54 Identities=13% Similarity=0.262 Sum_probs=35.9
Q ss_pred cccEEEeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHh
Q 010876 240 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 293 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 293 (498)
.+++||+|=+-++... .....+..+.....++..++.++||...+....++.|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 5678888888765432 13455555655666777788899998766666666653
No 287
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.92 E-value=0.082 Score=48.70 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=33.3
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 128 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
-.+.-+++.+++|+|||+.++-.+. .+.. .+.++++++.. +-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~-~~~~-------~g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAY-GFLQ-------NGYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH-HHHh-------CCCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 3466799999999999976433233 2322 24568888854 33345555555554
No 288
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.91 E-value=0.032 Score=59.60 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=69.7
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cccccC
Q 010876 328 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARGL 402 (498)
Q Consensus 328 l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gl 402 (498)
+..++.....+.+++|.++++.-|.+.++.+++ .++++..+||+++..+|..+++...+|+.+|+|+|. .+...+
T Consensus 274 ~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~ 353 (630)
T TIGR00643 274 ALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV 353 (630)
T ss_pred HHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc
Confidence 344455555667999999999998888777654 368899999999999999999999999999999994 555677
Q ss_pred CCCCCCEEEE
Q 010876 403 DVKDVKYVIN 412 (498)
Q Consensus 403 di~~v~~VI~ 412 (498)
++.++.+||.
T Consensus 354 ~~~~l~lvVI 363 (630)
T TIGR00643 354 EFKRLALVII 363 (630)
T ss_pred cccccceEEE
Confidence 8888888874
No 289
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.89 E-value=0.083 Score=51.82 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=25.2
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
...++||+||+|.+.... ...+..++...+....+|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALREDA-QQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHHH-HHHHHHHHHhccCCCeEEEEe
Confidence 456799999999875432 445566666655555555544
No 290
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.17 Score=49.64 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=82.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc-Cc-HH-HHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA-PT-RE-LAVQIQQESTKFGASSKIKSTCIYGGVPK 206 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~-P~-~~-La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (498)
++.+++++|+|+|||....-.+. .+..+ +.++.++. .+ |. -+.|| +.+....++.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~-~l~~~-------g~~V~lItaDtyR~gAveQL----k~yae~lgvpv--------- 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW-QLLKQ-------NRTVGFITTDTFRSGAVEQF----QGYADKLDVEL--------- 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHHc-------CCeEEEEeCCccCccHHHHH----HHHhhcCCCCE---------
Confidence 34578999999999976544333 22221 34454444 22 22 12333 33333322221
Q ss_pred chhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEcCCCcH-H
Q 010876 207 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPK-E 284 (498)
Q Consensus 207 ~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~ 284 (498)
.+..+|+.+.+.+.... ...++++|++|=+-+.... .....+..+.....++.-++.+||+... +
T Consensus 265 ------------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d 331 (407)
T PRK12726 265 ------------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSAD 331 (407)
T ss_pred ------------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHH
Confidence 12345666655443221 1245789999988765322 1234445555555555556677886543 4
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCC
Q 010876 285 VEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDT 347 (498)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s 347 (498)
...++..|..-+. -...+...++..+.-.++.+.... +-|+..++..
T Consensus 332 ~~~i~~~f~~l~i--------------~glI~TKLDET~~~G~~Lsv~~~t--glPIsylt~G 378 (407)
T PRK12726 332 VMTILPKLAEIPI--------------DGFIITKMDETTRIGDLYTVMQET--NLPVLYMTDG 378 (407)
T ss_pred HHHHHHhcCcCCC--------------CEEEEEcccCCCCccHHHHHHHHH--CCCEEEEecC
Confidence 4444444322111 011223334455566666666553 3355555443
No 291
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.059 Score=58.29 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=23.7
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEE
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 277 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 277 (498)
.+++++||||+|+|.... ...+.+++...+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 467899999999986443 33444455544444545554
No 292
>PTZ00293 thymidine kinase; Provisional
Probab=95.86 E-value=0.084 Score=47.35 Aligned_cols=38 Identities=18% Similarity=0.063 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 175 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~ 175 (498)
|+=-++.+|++||||.-.+-.+..+... +.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a--------g~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS--------EKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc--------CCceEEEEec
Confidence 3345789999999997644433333222 5568888885
No 293
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.86 E-value=0.074 Score=43.90 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=13.7
Q ss_pred EEEEcCCCchHHHHHHH
Q 010876 133 LIGIAETGSGKTLAYLL 149 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l 149 (498)
+++.+|+|+|||..+-.
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 58899999999986433
No 294
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.82 E-value=0.042 Score=53.42 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=27.0
Q ss_pred cccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcC
Q 010876 240 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 279 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 279 (498)
..++|||||+|.+........+..++...+...++|+.+.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4578999999988433335566666777666666665443
No 295
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.82 E-value=0.14 Score=55.14 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=16.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHh
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
+++.|+||+|||++... ++..+.
T Consensus 784 LYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHH
Confidence 45999999999987444 444443
No 296
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.81 E-value=0.045 Score=59.69 Aligned_cols=71 Identities=21% Similarity=0.147 Sum_probs=52.0
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
..|++-|.+|+... ...++|.|..|||||.+..--+ .++..... -...++|+++-|+.-|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ri-a~Li~~~~---i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRI-AHLIAEKN---VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHH-HHHHHcCC---CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 36899999998753 4579999999999998744433 34443211 123459999999999999999888764
No 297
>PLN03025 replication factor C subunit; Provisional
Probab=95.80 E-value=0.12 Score=50.24 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=24.4
Q ss_pred cccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 240 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
..+++|+||+|.|.... ...+.+++...++...+++.+
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 57899999999986543 455556665544444444433
No 298
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.80 E-value=0.053 Score=51.13 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=15.9
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
.++++.+|+|+|||..+-.
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4689999999999987544
No 299
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.79 E-value=0.076 Score=51.74 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHhhc--CC---cEEEEcCCCchHHHHHHHHHHHHHhc
Q 010876 116 PTPIQAQGWPMALK--GR---DLIGIAETGSGKTLAYLLPAIVHVNA 157 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~--~~---~~i~~a~TGsGKT~~~~l~~l~~~~~ 157 (498)
++|||...+..+.+ ++ .+++.+|.|.||+..+.. +...+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 47888888888764 22 488999999999976544 3444444
No 300
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.75 E-value=0.074 Score=51.84 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=26.9
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcC
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 279 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 279 (498)
...++||+||||.|.... ...+.+.+..-+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~~A-~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTEDA-ANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHHH-HHHHHHHhccCCCCeEEEEEcC
Confidence 578899999999987643 4555666655555555555443
No 301
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.75 E-value=0.054 Score=57.12 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=25.2
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
+.+.+++||||+|.+.... ...+.+.+...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3467899999999876533 234445555555555555554
No 302
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.081 Score=51.39 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHhhc--CC---cEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 116 PTPIQAQGWPMALK--GR---DLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~--~~---~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
++|||...|..+.+ ++ .+++.+|.|+|||..+.. +...+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHc
Confidence 37888888888773 22 489999999999976554 334444
No 303
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.65 E-value=0.092 Score=53.11 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.1
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
++++.||+|+|||..+..
T Consensus 38 ~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 38 SMILWGPPGTGKTTLARI 55 (413)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999976443
No 304
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.61 E-value=0.071 Score=49.45 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=37.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 191 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~ 191 (498)
.|..+++.+++|+|||..++-.+...+.. +.+++|++- .+-..++.+.+..++-
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--------ge~~lyvs~-ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGIYVAL-EEHPVQVRRNMAQFGW 73 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEe-eCCHHHHHHHHHHhCC
Confidence 35669999999999997654434444432 556888874 4666677777777653
No 305
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.61 E-value=0.092 Score=46.27 Aligned_cols=144 Identities=18% Similarity=0.083 Sum_probs=77.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH-HHHHHHHHHhcCCCCceEEEEeCCCCCc
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA-VQIQQESTKFGASSKIKSTCIYGGVPKG 207 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La-~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (498)
....+++..++|.|||.+++--++..+.. +.+|+++.=.+--. .-=...+.++. ++.....-.+....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~--------G~~V~ivQFlKg~~~~GE~~~l~~l~---~v~~~~~g~~~~~~ 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH--------GKKVGVVQFIKGAWSTGERNLLEFGG---GVEFHVMGTGFTWE 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC--------CCeEEEEEEecCCCccCHHHHHhcCC---CcEEEECCCCCccc
Confidence 45579999999999999877766666554 67788876433210 00011222211 22222111110000
Q ss_pred hhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc--HHHHHHHHHhcCCCCcEEEEcCCCcHHH
Q 010876 208 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEV 285 (498)
Q Consensus 208 ~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 285 (498)
. ...+--+......+..... ...-..+++||+||+-..++.++ ...+..++...++...+|+.--.+|+++
T Consensus 90 ~------~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 90 T------QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred C------CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 0 0000000111112222211 11235689999999999888774 4566677777777777777777788877
Q ss_pred HHHHH
Q 010876 286 EHLAR 290 (498)
Q Consensus 286 ~~~~~ 290 (498)
.+.+.
T Consensus 163 ie~AD 167 (191)
T PRK05986 163 IEAAD 167 (191)
T ss_pred HHhCc
Confidence 76654
No 306
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.089 Score=55.04 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=25.3
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcC
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 279 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 279 (498)
.+++++||||+|+|....+ ..+.+.+..-+....+|+.|-
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 4678999999999876543 334444444445555555543
No 307
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.11 Score=54.79 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=25.2
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
..+++++||||+|+|.... ...+.+.+...++...+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 3577899999999887543 334555555544444445444
No 308
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.58 E-value=0.18 Score=48.58 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=29.5
Q ss_pred cccccEEEeccchhhhcCCcH--HHHHHHHHhc-CCCCcEEEEcCCCcHHHHH
Q 010876 238 LRRVTYLVLDEADRMLDMGFE--PQIKKILSQI-RPDRQTLYWSATWPKEVEH 287 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~--~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~ 287 (498)
+.++++|||||+..-....|. ..+..|+... .....+++.|--...+...
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 457889999999854332232 2344555433 3566777777665444443
No 309
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.58 E-value=0.15 Score=51.38 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=18.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
.++++.|++|+|||..... ++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~-v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKK-VFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 4699999999999986333 444443
No 310
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.56 E-value=0.097 Score=51.93 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=23.3
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
...+++|+||+|.+....+. .+.+.+...++...+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 45689999999998754322 3334444444444455543
No 311
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.22 Score=49.62 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=31.4
Q ss_pred ccccEEEeccchhhhcC-CcHHHHHHHHHhcC---CCCcEEEEcCCCcH-HHHHHHHHH
Q 010876 239 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIR---PDRQTLYWSATWPK-EVEHLARQY 292 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~---~~~~~i~~SAT~~~-~~~~~~~~~ 292 (498)
.++++||+|=+-+.... .-...+..++.... +.-.++.+|||... .+...++.|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 46789999976654321 12334444454432 23457888999865 555555555
No 312
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.51 E-value=0.2 Score=47.44 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=35.0
Q ss_pred ccccEEEeccchhhhcC-CcHHHHHHHHHhcC------CCCcEEEEcCCCcHHHHHHHHHHh
Q 010876 239 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIR------PDRQTLYWSATWPKEVEHLARQYL 293 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~------~~~~~i~~SAT~~~~~~~~~~~~~ 293 (498)
.++++||+|=+-++... .....+..+..... ++-.++.++||...+....+..+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 46789999988775432 22345555555544 566788899987665555555544
No 313
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.49 E-value=0.11 Score=45.01 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=40.2
Q ss_pred ccccEEEeccchhhhcCCc--HHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHH
Q 010876 239 RRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 290 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 290 (498)
..+++||+||+-..++.++ ...+..+++..++...+|+..-..|+++.+++.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 5789999999998887763 356667777777778888888888887776654
No 314
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.48 E-value=0.11 Score=56.07 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=71.7
Q ss_pred hhhhHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhh-CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 010876 321 ESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRM-DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 398 (498)
Q Consensus 321 ~~~k~~~l~~~l~~-~~~~~~vlIf~~s~~~~~~l~~~L~~-~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 398 (498)
.+.|-...+..+.. +..+.++||.++++..+.++.+.|++ .+..+..+||+++..+|...+....+|+.+|+|+|..+
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 34455444444433 33456899999999999999999976 47789999999999999999999999999999999643
Q ss_pred cccCCCCCCCEEEEcC
Q 010876 399 ARGLDVKDVKYVINYD 414 (498)
Q Consensus 399 ~~Gldi~~v~~VI~~~ 414 (498)
. -+.+.++.+||.-+
T Consensus 252 l-~~p~~~l~liVvDE 266 (679)
T PRK05580 252 L-FLPFKNLGLIIVDE 266 (679)
T ss_pred h-cccccCCCEEEEEC
Confidence 2 25667888877544
No 315
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.44 E-value=0.076 Score=50.25 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=23.9
Q ss_pred CCcHHHHHHHHHhh----cCC-cEEEEcCCCchHHHHHH
Q 010876 115 EPTPIQAQGWPMAL----KGR-DLIGIAETGSGKTLAYL 148 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l----~~~-~~i~~a~TGsGKT~~~~ 148 (498)
.+++.+.+++..+. .+. .+++.|++|+|||+.+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 56666677776653 233 48899999999998633
No 316
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.03 Score=52.50 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHhc
Q 010876 128 LKGRDLIGIAETGSGKTLAYLLPAIVHVNA 157 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~ 157 (498)
++..|+++.+|||||||+.+.- |..++.
T Consensus 95 L~KSNILLiGPTGsGKTlLAqT--LAk~Ln 122 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQT--LAKILN 122 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHH--HHHHhC
Confidence 3445799999999999985443 444444
No 317
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.38 E-value=0.071 Score=59.01 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=67.8
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccccCCCC
Q 010876 331 LLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVK 405 (498)
Q Consensus 331 ~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gldi~ 405 (498)
.+.....+.+++|.++|..-|.+.++.++. .++.+..+++..+..++..+++.+++|+.+|+|+| ..+...+.+.
T Consensus 493 ~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~ 572 (926)
T TIGR00580 493 AFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFK 572 (926)
T ss_pred HHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcc
Confidence 344445567899999999999998887765 35678889999999999999999999999999999 4666778888
Q ss_pred CCCEEEE
Q 010876 406 DVKYVIN 412 (498)
Q Consensus 406 ~v~~VI~ 412 (498)
++.+||.
T Consensus 573 ~L~llVI 579 (926)
T TIGR00580 573 DLGLLII 579 (926)
T ss_pred cCCEEEe
Confidence 8888873
No 318
>PF13173 AAA_14: AAA domain
Probab=95.38 E-value=0.14 Score=42.22 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=26.3
Q ss_pred cccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCC
Q 010876 240 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 280 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 280 (498)
.-.+|++||+|.+.+ +...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999999864 577777777754 45565554444
No 319
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.38 E-value=0.14 Score=53.34 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=25.2
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
..+.+++||||+|.|....+ ..+.+.+...+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998875442 33444455544555555554
No 320
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.37 E-value=0.15 Score=49.37 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=27.7
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCC
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 280 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 280 (498)
....+++|+|+||.|.... ...+-+++..-++...+++.|..
T Consensus 105 ~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEECC
Confidence 3467899999999988654 55566666665555544554433
No 321
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.36 E-value=0.096 Score=53.31 Aligned_cols=88 Identities=23% Similarity=0.335 Sum_probs=52.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
+.-+++.+++|+|||+..+-.+. .+.. .+.+++|+.-. +-..|+.....+++.... -
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~-~~a~-------~g~~vlYvs~E-es~~qi~~ra~rlg~~~~--~------------ 136 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAA-RLAA-------AGGKVLYVSGE-ESASQIKLRAERLGLPSD--N------------ 136 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HHHh-------cCCeEEEEEcc-ccHHHHHHHHHHcCCChh--c------------
Confidence 45689999999999975443222 3222 24568888754 555677776666653211 0
Q ss_pred HHHHhcCCcEEEc---ChHHHHHHHhccCcccccccEEEeccchhhhc
Q 010876 210 VRDLQKGVEIVIA---TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 254 (498)
Q Consensus 210 ~~~~~~~~~Ivi~---T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~ 254 (498)
+.+. ..+.+...+.. .+.++||+|+++.+..
T Consensus 137 ---------l~~~~e~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 137 ---------LYLLAETNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred ---------EEEeCCCCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 1111 22334343322 3567999999998764
No 322
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36 E-value=0.11 Score=54.81 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=26.4
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
+...+++||||+|.+.... ...+.+.+...++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999987544 334445555555566666654
No 323
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.36 Score=48.36 Aligned_cols=172 Identities=16% Similarity=0.112 Sum_probs=82.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
+.-+.+++|||+|||+.....+-..+... +.....++.+.+.-.+ ..+++..++...++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~----------- 252 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVR----------- 252 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCcee-----------
Confidence 44588999999999976443222222221 1112245555553222 23334444433333322
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEcCCCc-HHHHH
Q 010876 210 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWP-KEVEH 287 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~ 287 (498)
.+.++..+...+. .+.+.+++++|.+-+.... .....+..+.....+...++.+|||.. ..+.+
T Consensus 253 ----------~v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 253 ----------SIKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred ----------cCCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 1223333322222 2556788999987433211 112333333322334456788999974 44555
Q ss_pred HHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcc
Q 010876 288 LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKK 349 (498)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~ 349 (498)
....|..-.. -...+..+++..+.-.++.++... +-++..++...+
T Consensus 319 ~~~~f~~~~~--------------~~~I~TKlDEt~~~G~~l~~~~~~--~lPi~yvt~Gq~ 364 (420)
T PRK14721 319 VISAYQGHGI--------------HGCIITKVDEAASLGIALDAVIRR--KLVLHYVTNGQK 364 (420)
T ss_pred HHHHhcCCCC--------------CEEEEEeeeCCCCccHHHHHHHHh--CCCEEEEECCCC
Confidence 5555532111 111233344555566666666653 335655555443
No 324
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.35 E-value=0.16 Score=46.80 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=31.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.|..+++.+++|+|||..+...+...+.. +..++++.. .+.+.++.+.+..++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 45679999999999997544333333322 445777764 334455555555543
No 325
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.042 Score=57.46 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.6
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
.+|+.+|.|+|||.++.+
T Consensus 40 a~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARI 57 (624)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999988665
No 326
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.33 E-value=0.058 Score=51.15 Aligned_cols=41 Identities=29% Similarity=0.182 Sum_probs=26.6
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 127 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
+..|.-+++.|++|+|||...+-.+...+.. .+..++|++-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEc
Confidence 3456679999999999997544333333222 1556888764
No 327
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.33 E-value=0.18 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=17.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
.+|+.||.|+|||..+.+ +...+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~-lA~~l~ 63 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI-LAKAVN 63 (585)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 369999999999987555 344443
No 328
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.28 E-value=0.085 Score=60.81 Aligned_cols=124 Identities=18% Similarity=0.108 Sum_probs=76.4
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
+.|+-|.++|. ..+.++++.|.-|||||.+.+--++..+... ..-.++|+|+=|+.-|.++.+.+.+-....
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~- 72 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKA- 72 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHH-
Confidence 35888999997 3678999999999999988655555555432 112459999999999988888777532110
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccc--cccEEEeccchh
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLR--RVTYLVLDEADR 251 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~--~~~~vI~DE~h~ 251 (498)
+. .........+.+..-...-|+|...+...+.+.....- +..+=|.||...
T Consensus 73 ~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 00011112222333346778999887765544322111 224566888874
No 329
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.27 E-value=0.13 Score=54.00 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=25.6
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
..+.+++||||+|.|.... ...+.+.+...+....+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 3567899999999987654 334445555544455555544
No 330
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.27 E-value=0.11 Score=53.89 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=25.5
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
....+++||||+|++.... ...+.+.+...+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999987544 334445555544455555544
No 331
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.26 E-value=0.23 Score=43.54 Aligned_cols=90 Identities=20% Similarity=0.208 Sum_probs=52.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 211 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (498)
=.++.+|+.||||...+- .+..... .+.++++..|...- ++ +...+...-|..
T Consensus 6 l~~i~gpM~SGKT~eLl~-r~~~~~~-------~g~~v~vfkp~iD~---------R~----~~~~V~Sr~G~~------ 58 (201)
T COG1435 6 LEFIYGPMFSGKTEELLR-RARRYKE-------AGMKVLVFKPAIDT---------RY----GVGKVSSRIGLS------ 58 (201)
T ss_pred EEEEEccCcCcchHHHHH-HHHHHHH-------cCCeEEEEeccccc---------cc----ccceeeeccCCc------
Confidence 368899999999986333 2222222 26678888884211 11 111122222221
Q ss_pred HHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhh
Q 010876 212 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 253 (498)
Q Consensus 212 ~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~ 253 (498)
..-++|-.+..+.+.+......+ .+++|.+|||+-+.
T Consensus 59 ----~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~ 95 (201)
T COG1435 59 ----SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFD 95 (201)
T ss_pred ----ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCC
Confidence 13466667777777776544333 27899999999654
No 332
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.26 E-value=0.1 Score=50.83 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=29.5
Q ss_pred CCcHHHHHHHHHhh----cCC---cEEEEcCCCchHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVNA 157 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l----~~~---~~i~~a~TGsGKT~~~~l~~l~~~~~ 157 (498)
.++|||...|..+. +++ -.++.+|.|.||+..+.. +...+..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~LlC 50 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLMC 50 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHcC
Confidence 46788888888765 333 488999999999976544 3444443
No 333
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.24 E-value=0.12 Score=53.47 Aligned_cols=92 Identities=18% Similarity=0.252 Sum_probs=70.5
Q ss_pred hhhHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhC-CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 010876 322 SQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 399 (498)
Q Consensus 322 ~~k~~~l~~~l~~-~~~~~~vlIf~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 399 (498)
..|-...+.++.. +..+.++||.++++.-+.++++.|++. +..+..+|++++..+|..+..+..+|+.+|+|+|..+-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 3455444444443 334668999999999999999999764 67789999999999999999999999999999995432
Q ss_pred ccCCCCCCCEEEEcC
Q 010876 400 RGLDVKDVKYVINYD 414 (498)
Q Consensus 400 ~Gldi~~v~~VI~~~ 414 (498)
. ..++++.+||.-+
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 2 4567788777543
No 334
>CHL00181 cbbX CbbX; Provisional
Probab=95.18 E-value=0.17 Score=48.36 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
+.++++.+|+|+|||.++..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 44689999999999987655
No 335
>PRK05973 replicative DNA helicase; Provisional
Probab=95.17 E-value=0.21 Score=45.94 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=41.0
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.++| ..+...-+..|.-+++.|++|+|||..++-.+...+.. +.+++|++-- +-..|+.+.+..++
T Consensus 50 ~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--------Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 50 ATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--------GRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred CCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 3455 22333345566679999999999997655433333322 5568887643 33567777777764
No 336
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.031 Score=54.60 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 175 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~ 175 (498)
..|+|+.+|||||||+.+.- |..++. -|.+|.=|.|
T Consensus 226 KSNvLllGPtGsGKTllaqT--LAr~ld--------VPfaIcDcTt 261 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQT--LARVLD--------VPFAICDCTT 261 (564)
T ss_pred cccEEEECCCCCchhHHHHH--HHHHhC--------CCeEEecccc
Confidence 35799999999999985433 444444 4555555544
No 337
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.16 E-value=0.081 Score=48.63 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=65.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC-------CceEEEEe
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS-------KIKSTCIY 201 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~-------~~~~~~~~ 201 (498)
.|..+++.+++|+|||..++--+...+.. .+.+++|++- .+-..++.+.+..++... .+.+.-..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 35679999999999997644434444443 0345888774 345566777777664321 01111111
Q ss_pred CCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcC----CcHHHHHHHHHhcCCCCcEEEE
Q 010876 202 GGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM----GFEPQIKKILSQIRPDRQTLYW 277 (498)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~----~~~~~~~~i~~~~~~~~~~i~~ 277 (498)
...... . -..++.+...+...... .+.+.+|+|-...+... .+...+..+...++....+.++
T Consensus 90 ~~~~~~----------~--~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~ll 156 (226)
T PF06745_consen 90 PERIGW----------S--PNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLL 156 (226)
T ss_dssp GGGST-----------T--SCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEE
T ss_pred cccccc----------c--ccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 000000 0 12333343333321111 12379999999988222 2445555666655544455555
Q ss_pred cCC
Q 010876 278 SAT 280 (498)
Q Consensus 278 SAT 280 (498)
++.
T Consensus 157 t~~ 159 (226)
T PF06745_consen 157 TSE 159 (226)
T ss_dssp EEE
T ss_pred EEc
Confidence 555
No 338
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.18 Score=50.73 Aligned_cols=24 Identities=33% Similarity=0.177 Sum_probs=17.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
.+|+.+|.|+|||.++.+ +...+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~-~a~~l~ 63 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV-FAKAVN 63 (397)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhc
Confidence 388999999999987655 334443
No 339
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.14 E-value=0.14 Score=50.56 Aligned_cols=91 Identities=16% Similarity=0.270 Sum_probs=51.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
|.-+++.+++|+|||...+.. ...+.. .+.+++|+.-. +-..|+.....+++.... ...++.
T Consensus 82 GslvLI~G~pG~GKStLllq~-a~~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~--~l~l~~------- 143 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQV-AARLAK-------RGGKVLYVSGE-ESPEQIKLRADRLGISTE--NLYLLA------- 143 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHH-HHHHHh-------cCCeEEEEECC-cCHHHHHHHHHHcCCCcc--cEEEEc-------
Confidence 455899999999999764432 233222 14568888754 345666666666542211 000110
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhc
Q 010876 210 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 254 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~ 254 (498)
-...+.+.+.+.. .+.++||+|+++.+..
T Consensus 144 -----------e~~le~I~~~i~~-----~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 144 -----------ETNLEDILASIEE-----LKPDLVIIDSIQTVYS 172 (372)
T ss_pred -----------cCcHHHHHHHHHh-----cCCcEEEEcchHHhhc
Confidence 0122344444432 3568999999998753
No 340
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.12 E-value=0.079 Score=53.90 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
++-+.+++|||+|||+....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CcEEEEECCCCccHHHHHHH
Confidence 34588999999999987554
No 341
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.09 E-value=0.45 Score=41.30 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=65.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH-HHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 211 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~-La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (498)
+.+--..|=|||.+++=-++..+.. +.+|+++.=.+. -..-=...+.++. ++.....-.+-.......
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~--------G~rV~ivQFlKg~~~~GE~~~l~~l~---~~~~~~~g~~f~~~~~~~ 74 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH--------GMRVLIVQFLKGGRYSGELKALKKLP---NVEIERFGKGFVWRMNEE 74 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT--------T--EEEEESS--SS--HHHHHHGGGT-----EEEE--TT----GGGH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC--------CCEEEEEEEecCCCCcCHHHHHHhCC---eEEEEEcCCcccccCCCc
Confidence 4455668999999987766666554 778999876554 1111112233332 122211111100000000
Q ss_pred HHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc--HHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHH
Q 010876 212 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLA 289 (498)
Q Consensus 212 ~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 289 (498)
. .+ .......++.... ...-..+++||+||+-..++.++ ...+..++...++...+|+.--.+|+++.+.+
T Consensus 75 ~----~~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 75 E----ED--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp H----HH--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred H----HH--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 0 00 0111112222211 12235789999999998888774 45666777777777888877777888777665
Q ss_pred H
Q 010876 290 R 290 (498)
Q Consensus 290 ~ 290 (498)
.
T Consensus 148 D 148 (172)
T PF02572_consen 148 D 148 (172)
T ss_dssp S
T ss_pred C
Confidence 3
No 342
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.07 E-value=0.13 Score=51.40 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=26.8
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHH
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEV 285 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 285 (498)
...+++||||+|+|.... ...+.+.+..-++.. ++++.+|-+..+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~l 160 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPEDV 160 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHHC
Confidence 467899999999986543 344555555544444 444455434333
No 343
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.07 E-value=0.13 Score=53.69 Aligned_cols=131 Identities=18% Similarity=0.156 Sum_probs=76.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC--CceEEEEeCCCCCch
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS--KIKSTCIYGGVPKGP 208 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 208 (498)
+-.++..|=-.|||.... +++..+... -.+-+++|++|.+..++.+++++..+.... ...+..+.| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I-- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI-- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--
Confidence 458889999999998644 555544421 127789999999999999999888754321 111111122 100
Q ss_pred hHHHHhcC--CcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCC
Q 010876 209 QVRDLQKG--VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 280 (498)
Q Consensus 209 ~~~~~~~~--~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 280 (498)
...+.++ ..|.+++. -..+..-=..++++|+|||+-+.+..+...+ -.+. ..+.++|++|.|
T Consensus 326 -~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~--~~n~k~I~ISS~ 389 (738)
T PHA03368 326 -SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLN--QTNCKIIFVSST 389 (738)
T ss_pred -EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHh--ccCccEEEEecC
Confidence 0011122 14555431 0111122347899999999988764433333 2221 248889999988
No 344
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.04 E-value=0.19 Score=53.56 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=75.1
Q ss_pred hhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhC-C-CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 010876 321 ESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-G-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 397 (498)
Q Consensus 321 ~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~-~-~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 397 (498)
.+.|.+..+.++.+.. .++.+||.++.+..+..+...|+.. + ..+..+|++++..+|...+.+..+|+.+|+|.|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 3567777777777654 4668999999999999999999864 3 56899999999999999999999999999999954
Q ss_pred ccccCCCCCCCEEEEcC
Q 010876 398 AARGLDVKDVKYVINYD 414 (498)
Q Consensus 398 ~~~Gldi~~v~~VI~~~ 414 (498)
+. =.-+++...||..+
T Consensus 250 Av-FaP~~~LgLIIvdE 265 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eE-EeccCCCCEEEEEc
Confidence 32 24566777777544
No 345
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.00 E-value=0.094 Score=50.64 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=41.8
Q ss_pred HHHHCCCCCCcHHHHHHHHHhh-cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 010876 107 EISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 178 (498)
Q Consensus 107 ~l~~~~~~~~~~~Q~~~i~~~l-~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~L 178 (498)
.+.+.+. +++.|.+.+..+. .+.+++++++||||||+. +-+++..+...+ ...+++.+=.+.||
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El 186 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEI 186 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCccc
Confidence 3444443 5677887776655 456899999999999974 444555543311 13467777777776
No 346
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.97 E-value=0.23 Score=52.16 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=15.2
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
-++++||.|+|||.++-+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999987655
No 347
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.94 E-value=0.22 Score=49.43 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
.++++.||+|+|||.+. -.++.++.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 46999999999999763 33455443
No 348
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.94 E-value=0.4 Score=44.28 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=33.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
+.-+++.+++|+|||..+..-+...+.. +.+++|+.-.. -..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--------g~~~~y~~~e~-~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--------GKKVYVITTEN-TSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--------CCEEEEEEcCC-CHHHHHHHHHHCC
Confidence 4568899999999997544433333322 56688877643 3356666666664
No 349
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.91 E-value=0.091 Score=48.84 Aligned_cols=40 Identities=28% Similarity=0.143 Sum_probs=26.1
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 128 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
..|.-+++.|++|+|||...+--+...+.. .+..++|++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-------~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK-------QGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCceEEEeC
Confidence 345668999999999996544333333332 1456888873
No 350
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.26 Score=52.06 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=24.0
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
+...+++||||+|.+.... ...+.+.+...++..-+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999987543 233444444444444444444
No 351
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.85 E-value=0.18 Score=49.92 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=33.0
Q ss_pred cccEEEeccchhhhcCC-cHHHHHHHHHhcC-CCCcEEEEcCCCcHHHHH
Q 010876 240 RVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEVEH 287 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~ 287 (498)
+++++++|+++.+.... ....+-.++..+. ...|+++.|..+|.++..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 77899999999887652 3444445555544 344888888888877653
No 352
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.85 E-value=0.24 Score=48.72 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=26.2
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcC
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 279 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 279 (498)
....++||||+|.|.... ...+.+.+...+....++++|.
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISH 179 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEEC
Confidence 467899999999986544 3445556665545555555553
No 353
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.83 E-value=0.11 Score=49.86 Aligned_cols=49 Identities=18% Similarity=0.115 Sum_probs=28.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 188 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~ 188 (498)
++|+++|+|+|||..+-+.+ ... .....+.+=+.-|.+-.+.+.+.+++
T Consensus 164 SmIlWGppG~GKTtlArlia-~ts-------k~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIA-STS-------KKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred ceEEecCCCCchHHHHHHHH-hhc-------CCCceEEEEEeccccchHHHHHHHHH
Confidence 69999999999997544321 111 11234456666665555555444443
No 354
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.78 E-value=0.068 Score=55.96 Aligned_cols=68 Identities=21% Similarity=0.160 Sum_probs=49.2
Q ss_pred CCcHHHHHHHHHhhcC--CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH-HHHHHh
Q 010876 115 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ-QESTKF 189 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~-~~~~~~ 189 (498)
..+|||.+.++.+... +.++++.++-+|||.+.+. ++-+...+ ....+|++.||..+|..+. +.+...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~------~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSIDQ------DPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEEe------CCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 6789999999987754 4699999999999986444 33333332 1233899999999998876 445444
No 355
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.77 E-value=0.29 Score=48.34 Aligned_cols=43 Identities=19% Similarity=0.096 Sum_probs=27.0
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCC
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 281 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 281 (498)
.....++||||+|.|.... ...+.+.+...+....+|++|...
T Consensus 139 ~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCc
Confidence 3567899999999886443 344555555544455555555443
No 356
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.77 E-value=0.17 Score=52.73 Aligned_cols=90 Identities=17% Similarity=0.250 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHhhcCCCeEEEEeCCcc----cHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-cc
Q 010876 323 QKYNKLVKLLEDIMDGSRILIFMDTKK----GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DV 397 (498)
Q Consensus 323 ~k~~~l~~~l~~~~~~~~vlIf~~s~~----~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~~ 397 (498)
.-.-.++..+..+..+.++...++|.- +.+.+.++|...++.+..+.|.+....|.+++....+|+++++|.| ..
T Consensus 296 KTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL 375 (677)
T COG1200 296 KTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL 375 (677)
T ss_pred HHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh
Confidence 345556666777777889999999965 4555666666678999999999999999999999999999999999 56
Q ss_pred ccccCCCCCCCEEEE
Q 010876 398 AARGLDVKDVKYVIN 412 (498)
Q Consensus 398 ~~~Gldi~~v~~VI~ 412 (498)
+...+++.++.+||.
T Consensus 376 iQd~V~F~~LgLVIi 390 (677)
T COG1200 376 IQDKVEFHNLGLVII 390 (677)
T ss_pred hhcceeecceeEEEE
Confidence 778999999988883
No 357
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.76 E-value=0.15 Score=54.87 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=24.8
Q ss_pred cccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHH
Q 010876 240 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEV 285 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 285 (498)
+..++||||+|++... ....++..+ ...++++.++|-++..
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTenp~ 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTENPY 149 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCChH
Confidence 4568999999987532 222333333 3456777777754433
No 358
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.75 E-value=0.29 Score=47.26 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=29.4
Q ss_pred CCcHHHHHHHHHhh----cCC---cEEEEcCCCchHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVNA 157 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l----~~~---~~i~~a~TGsGKT~~~~l~~l~~~~~ 157 (498)
.++|||...+..+. +++ -.++.+|.|.||+..+.. +...+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~llC 51 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALLC 51 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHcC
Confidence 56788888887765 333 489999999999976444 3444443
No 359
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.73 E-value=0.12 Score=54.47 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=23.3
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
.+++++||||+|+|....|. .+.+.+...+....+|+.+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE
Confidence 46889999999998755433 2334444433344444443
No 360
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.72 E-value=0.095 Score=54.62 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=23.1
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
...+++|+||+|.|.... ...+.+.+...+....+|+++
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEEC
Confidence 356789999999886433 234444455444444444444
No 361
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=1 Score=43.90 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHH
Q 010876 131 RDLIGIAETGSGKTLA 146 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~ 146 (498)
+.+++.+|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 4699999999999974
No 362
>PRK10867 signal recognition particle protein; Provisional
Probab=94.67 E-value=0.32 Score=49.00 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=14.3
Q ss_pred EEEEcCCCchHHHHHHH
Q 010876 133 LIGIAETGSGKTLAYLL 149 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l 149 (498)
+++++++|+|||+.+.-
T Consensus 103 I~~vG~~GsGKTTtaak 119 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 78889999999987554
No 363
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.67 E-value=0.13 Score=46.25 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=26.5
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCC
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 280 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 280 (498)
..+.+.||+||||.|-+-. ...+++.+....+..++.+...+
T Consensus 111 ~grhKIiILDEADSMT~gA-QQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAGA-QQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCceeEEEeeccchhhhHH-HHHHHHHHHHHcccchhhhhhcc
Confidence 3567899999999887532 45566665555544444443333
No 364
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.65 E-value=0.2 Score=47.73 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
+.++++.+|+|+|||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 44799999999999987643
No 365
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=94.62 E-value=0.11 Score=48.75 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=24.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 177 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~ 177 (498)
.++.+||||||+- ++..+.....+.+ ..-.|++|+|.+.
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~P-~PETVfFItP~~~ 128 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQP-PPETVFFITPQKD 128 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCcccC-CCCceEEECCCCC
Confidence 5677999999995 2344433322222 2345899999773
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.59 E-value=0.67 Score=40.45 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=30.4
Q ss_pred ccccEEEeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHH
Q 010876 239 RRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 292 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 292 (498)
...+++|+|....... ......+..+.....++.-++.+++.-..+..+.+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 3567899999887532 12233344444333455566677776555555555444
No 367
>PRK04195 replication factor C large subunit; Provisional
Probab=94.56 E-value=0.26 Score=50.91 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
.+.+++.||+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999997643
No 368
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.51 E-value=0.18 Score=51.60 Aligned_cols=17 Identities=29% Similarity=0.303 Sum_probs=14.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 010876 133 LIGIAETGSGKTLAYLL 149 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l 149 (498)
+++.||+|+|||..+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999987655
No 369
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.46 E-value=0.12 Score=51.01 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhc
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNA 157 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~ 157 (498)
+..+++++|||||||+. +-.++.++..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 34589999999999975 4456666654
No 370
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=94.44 E-value=0.094 Score=48.39 Aligned_cols=83 Identities=13% Similarity=0.207 Sum_probs=61.9
Q ss_pred CcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccc-cCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHH
Q 010876 389 SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTG-RAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPE 467 (498)
Q Consensus 389 ~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~-R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 467 (498)
..|+|.=+.++||+.++++.+..+...+.+.++++||.---| |.|-...|-+++++.-...+..+ .++..++.++
T Consensus 136 ~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i----~~~~e~lr~~ 211 (239)
T PF10593_consen 136 NVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDLCRIYMPEELYDWFRHI----AEAEEELREE 211 (239)
T ss_pred eEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcccccceEEecCHHHHHHHHHH----HHHHHHHHHH
Confidence 668888899999999999999999999999999999964444 66667888888877644444443 4445555666
Q ss_pred HHhhhcCC
Q 010876 468 LAAMGRGA 475 (498)
Q Consensus 468 l~~~~~~~ 475 (498)
|..|+...
T Consensus 212 i~~~~~~~ 219 (239)
T PF10593_consen 212 IKEMANNG 219 (239)
T ss_pred HHHHHhcC
Confidence 66665433
No 371
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.42 E-value=0.15 Score=46.83 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=23.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
+++++|++|||||.. ++-++..+... -..+++++|
T Consensus 15 r~viIG~sGSGKT~l-i~~lL~~~~~~-------f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTL-IKSLLYYLRHK-------FDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHH-HHHHHHhhccc-------CCEEEEEec
Confidence 699999999999964 44455444331 245666677
No 372
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=94.41 E-value=0.7 Score=40.25 Aligned_cols=142 Identities=20% Similarity=0.171 Sum_probs=74.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHH-HHHHHHHhcCCCCceEEEEeCCCCCchhHH
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ-IQQESTKFGASSKIKSTCIYGGVPKGPQVR 211 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (498)
+++.-..|-|||++++--++..+.. |.+|+|+.=.+-=... -...+.+|.. .+.....-.+.....+.+
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~Gh--------G~rv~vvQFiKg~~~~GE~~~~~~~~~--~v~~~~~~~g~tw~~~~~ 100 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGH--------GLRVGVVQFIKGGWKYGEEAALEKFGL--GVEFHGMGEGFTWETQDR 100 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcC--------CCEEEEEEEeecCcchhHHHHHHhhcc--ceeEEecCCceeCCCcCc
Confidence 5666778889999988767766554 7778887533211000 0112223311 111111111111111100
Q ss_pred HHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc--HHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHH
Q 010876 212 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLA 289 (498)
Q Consensus 212 ~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 289 (498)
+ .++ ......+..... .+.-..+++||+||+-..+..++ ...+..++...+....+|+.--..|+++.+.+
T Consensus 101 ~----~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~A 173 (198)
T COG2109 101 E----ADI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELA 173 (198)
T ss_pred H----HHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHH
Confidence 0 022 222222222211 11123688999999998887763 34566667766677777777777888877766
Q ss_pred HH
Q 010876 290 RQ 291 (498)
Q Consensus 290 ~~ 291 (498)
..
T Consensus 174 Dl 175 (198)
T COG2109 174 DL 175 (198)
T ss_pred HH
Confidence 54
No 373
>PHA00729 NTP-binding motif containing protein
Probab=94.39 E-value=0.33 Score=44.08 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=36.4
Q ss_pred cEEEcChHHHHHHHhccCcccccccEEEeccchhhhcC-CcH----HHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHH
Q 010876 218 EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFE----PQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ 291 (498)
Q Consensus 218 ~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~-~~~----~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 291 (498)
..++.+.+.+.+.+........+++++|+||+-.-... .|. .....+...++...+++.+...-++++...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 44555555555555432222234678999994321111 011 112223333344455677776666666666555
No 374
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.39 E-value=0.12 Score=49.49 Aligned_cols=60 Identities=23% Similarity=0.134 Sum_probs=43.6
Q ss_pred CCCCCCcHHHHHHHHHhhcCC-cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 010876 111 AGFFEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 179 (498)
Q Consensus 111 ~~~~~~~~~Q~~~i~~~l~~~-~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La 179 (498)
..|..+++-|...+..+...+ ++++++.||||||+. ++.+...- . ..-+++.+=.|.||-
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-----LNal~~~i--~--~~eRvItiEDtaELq 213 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-----LNALSGFI--D--SDERVITIEDTAELQ 213 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-----HHHHHhcC--C--CcccEEEEeehhhhc
Confidence 345688999999998888776 899999999999973 22222211 1 133799998888884
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.37 E-value=0.38 Score=51.34 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=38.3
Q ss_pred cccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCc
Q 010876 240 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 282 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 282 (498)
+.-++|+|+.|++.+......++.+++..+++...++.|-+-|
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3458999999999999888999999999999999999998754
No 376
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.36 E-value=0.32 Score=54.75 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=35.4
Q ss_pred cccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcH
Q 010876 240 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPK 283 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 283 (498)
.--+||||++|.+.+......+..++...++..++|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34589999999987666667888889988889999888877543
No 377
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.33 E-value=0.77 Score=50.14 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.9
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
.++++.+|+|+|||..+..
T Consensus 204 ~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 4799999999999986544
No 378
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.30 E-value=0.13 Score=50.54 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=19.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
.+.-+++++|||||||+. +-.++.++.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 445699999999999975 344555554
No 379
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.29 E-value=0.41 Score=51.92 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
..++++.+|+|+|||..+..
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 35799999999999986544
No 380
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.29 E-value=0.16 Score=49.09 Aligned_cols=66 Identities=26% Similarity=0.319 Sum_probs=42.3
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHhh-cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 010876 105 MQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 178 (498)
Q Consensus 105 ~~~l~~~~~~~~~~~Q~~~i~~~l-~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~L 178 (498)
++.+.+.|+ +++.|.+.+..+. .+.+++++++||||||.. +-.++..+... ....+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-----~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ-----DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc-----CCCceEEEEcCCCcc
Confidence 344444454 5577888877644 567899999999999954 44444443221 123467777777766
No 381
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.28 E-value=0.65 Score=45.07 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=25.4
Q ss_pred cccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcC
Q 010876 240 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 279 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 279 (498)
..++||+||+|.+.... ...+..++...++...+|+.+.
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEeC
Confidence 45799999999886432 3455666666555666665543
No 382
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.21 E-value=0.17 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=17.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHh
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
+++.+|+|+|||.++.. +...+.
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHh
Confidence 59999999999987554 444444
No 383
>PRK04328 hypothetical protein; Provisional
Probab=94.21 E-value=0.44 Score=44.52 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=35.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 191 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~ 191 (498)
.|..+++.+++|+|||..++-.+...+.. +..++|++ +.+-..++.+.+..++-
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 35568999999999997544434443333 55578776 44555567777776653
No 384
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.18 E-value=0.21 Score=47.93 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=41.5
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHhh-cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 010876 105 MQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 179 (498)
Q Consensus 105 ~~~l~~~~~~~~~~~Q~~~i~~~l-~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La 179 (498)
++.+.+.|. +.+-|.+.+..+. .+.+++++++||||||.. +-.++..+... ....+++++=.+.|+.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-----~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN-----DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc-----CCCceEEEECCchhhc
Confidence 344444443 4455666665544 466899999999999975 34344444331 1144688888877773
No 385
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.16 E-value=0.21 Score=56.72 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=64.5
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccccCCCCCCCE
Q 010876 335 IMDGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVKDVKY 409 (498)
Q Consensus 335 ~~~~~~vlIf~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gldi~~v~~ 409 (498)
...+.+++|.++|+.-|.++++.+++. ++.+..+++..+..++..+++.+++|..+|+|+| ..+...+++.++.+
T Consensus 646 ~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~l 725 (1147)
T PRK10689 646 VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGL 725 (1147)
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCE
Confidence 345678999999999999988887652 4567789999999999999999999999999999 45556677778888
Q ss_pred EEE
Q 010876 410 VIN 412 (498)
Q Consensus 410 VI~ 412 (498)
+|.
T Consensus 726 LVI 728 (1147)
T PRK10689 726 LIV 728 (1147)
T ss_pred EEE
Confidence 773
No 386
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.10 E-value=0.084 Score=53.08 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHhhcCCc--EEEEcCCCchHHHHHHHHHHHHHhc
Q 010876 116 PTPIQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNA 157 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~~~~--~i~~a~TGsGKT~~~~l~~l~~~~~ 157 (498)
..+.|.+.+..+++... +++.+|||||||+. +..++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 37778888888776654 78889999999986 6667777665
No 387
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.03 E-value=0.93 Score=43.34 Aligned_cols=129 Identities=21% Similarity=0.263 Sum_probs=73.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC--cHHHHHHHHHHHHHhcCCCCceEEEE-eCCCCCchh
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP--TRELAVQIQQESTKFGASSKIKSTCI-YGGVPKGPQ 209 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P--~~~La~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 209 (498)
+++++-.|+|||+...- +..++.. .+.+|++.+- .|+=| .+++..++...+..++.- +|+.+..
T Consensus 142 il~vGVNG~GKTTTIaK-LA~~l~~-------~g~~VllaA~DTFRAaA---iEQL~~w~er~gv~vI~~~~G~DpAa-- 208 (340)
T COG0552 142 ILFVGVNGVGKTTTIAK-LAKYLKQ-------QGKSVLLAAGDTFRAAA---IEQLEVWGERLGVPVISGKEGADPAA-- 208 (340)
T ss_pred EEEEecCCCchHhHHHH-HHHHHHH-------CCCeEEEEecchHHHHH---HHHHHHHHHHhCCeEEccCCCCCcHH--
Confidence 78889999999987333 2233333 3667777664 34443 233334444444544432 2222110
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCC-cHHHHHHHHHhcCCCC------cEEEEcCCCc
Q 010876 210 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDR------QTLYWSATWP 282 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~~~~~------~~i~~SAT~~ 282 (498)
...+-++... -+++++|++|=|-|+.+.. ....+++|.+-+.+.. -++.+-||..
T Consensus 209 ----------------VafDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 209 ----------------VAFDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred ----------------HHHHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 1223333222 3577899999999887653 4567777777666544 3444489987
Q ss_pred HHHHHHHHHH
Q 010876 283 KEVEHLARQY 292 (498)
Q Consensus 283 ~~~~~~~~~~ 292 (498)
.+...-++.|
T Consensus 271 qnal~QAk~F 280 (340)
T COG0552 271 QNALSQAKIF 280 (340)
T ss_pred hhHHHHHHHH
Confidence 7766666655
No 388
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.96 E-value=0.22 Score=53.13 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=76.5
Q ss_pred EeecchhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhh-CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 010876 316 VDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRM-DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 393 (498)
Q Consensus 316 ~~~~~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~-~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLv 393 (498)
+.-+..+.|.+..++++.+.. .++.+||.++.+.....+...|+. .+.++..+|+++++.+|.....+..+|+.+|+|
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVI 301 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVI 301 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEE
Confidence 344567778888888887644 456899999999999888888875 478899999999999999999999999999999
Q ss_pred EeccccccCCCCCCCEEE
Q 010876 394 ATDVAARGLDVKDVKYVI 411 (498)
Q Consensus 394 aT~~~~~Gldi~~v~~VI 411 (498)
.|..+- =.-++++..+|
T Consensus 302 GtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 302 GTRSAL-FLPFKNLGLII 318 (730)
T ss_pred Eechhh-cCchhhccEEE
Confidence 995432 24456677666
No 389
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.94 E-value=0.43 Score=42.40 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=23.3
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEE
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 277 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 277 (498)
.....+|||||+|.+.... ...+.+.+...++...+++.
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEE
Confidence 4567899999999986532 33344444443334444444
No 390
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.91 E-value=0.27 Score=52.15 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=18.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhc
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNA 157 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~ 157 (498)
..+|+.||.|+|||..+.. +...+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~-lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI-LAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHHH-HHHHhcC
Confidence 3579999999999987555 3444443
No 391
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.85 E-value=0.71 Score=46.53 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=31.5
Q ss_pred cccEEEeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHh
Q 010876 240 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 293 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 293 (498)
.+++||+|=+-++... .....+..+...+.++--++.++|+...+....++.+.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~ 236 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFN 236 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHH
Confidence 4567888877765421 12344445555555555567777776666666665554
No 392
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.76 Score=45.43 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=18.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhc
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNA 157 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~ 157 (498)
++++-++||+|||.+.-. ++..+..
T Consensus 44 n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 44 NIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred cEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 599999999999987444 4555544
No 393
>PHA00012 I assembly protein
Probab=93.79 E-value=1.7 Score=41.51 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=32.7
Q ss_pred ccccEEEeccchhhhcCC-cH----HHHHHHHHhcC-CCCcEEEEcCCCcHHHHHHHHHHhcC
Q 010876 239 RRVTYLVLDEADRMLDMG-FE----PQIKKILSQIR-PDRQTLYWSATWPKEVEHLARQYLYN 295 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~-~~----~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~ 295 (498)
..-.++|+||||..+..- +. ..+...+...+ ...-++++|-.+ ..+...++..+..
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~p-s~VDs~IR~ll~e 141 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDI-SIMDKQAREALAE 141 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCH-HHHhHHHHHhhhh
Confidence 466799999999887532 11 32344333333 345556666654 4576666655443
No 394
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.67 E-value=0.36 Score=49.21 Aligned_cols=145 Identities=12% Similarity=0.103 Sum_probs=81.7
Q ss_pred CCCcHHHHHHHHHhhc------C----CcEEEEcCCCchHHHHHH-HHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 010876 114 FEPTPIQAQGWPMALK------G----RDLIGIAETGSGKTLAYL-LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 182 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~------~----~~~i~~a~TGsGKT~~~~-l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~ 182 (498)
..+-|||.-++-.++- + +..++..|-+-|||..+. +.....+... ..+..+.|++|+.+-+.+.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANS 134 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHh
Confidence 3678999999988771 2 247888999999995433 3333333332 2467799999999999888
Q ss_pred HHHHHHhcCCCC-ceEEEEeCCCCCchhHHHHhcCCc---EEEcChHHHHHHHhc--cCcccccccEEEeccchhhhcCC
Q 010876 183 QQESTKFGASSK-IKSTCIYGGVPKGPQVRDLQKGVE---IVIATPGRLIDMLES--HNTNLRRVTYLVLDEADRMLDMG 256 (498)
Q Consensus 183 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---Ivi~T~~~l~~~l~~--~~~~l~~~~~vI~DE~h~~~~~~ 256 (498)
...++....... +.. ......+ |...-....+..+.. ...+-.+..+.|+||.|...+.+
T Consensus 135 F~~ar~mv~~~~~l~~--------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~ 200 (546)
T COG4626 135 FNPARDMVKRDDDLRD--------------LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE 200 (546)
T ss_pred hHHHHHHHHhCcchhh--------------hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH
Confidence 887775443322 000 0000111 111111111111111 22334467899999999877652
Q ss_pred cHHHHHHHHHhc--CCCCcEEEEcC
Q 010876 257 FEPQIKKILSQI--RPDRQTLYWSA 279 (498)
Q Consensus 257 ~~~~~~~i~~~~--~~~~~~i~~SA 279 (498)
..+..+..-+ +++.+++..|.
T Consensus 201 --~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 --DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred --HHHHHHHhhhccCcCceEEEEec
Confidence 3333333332 35666666665
No 395
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.61 E-value=0.94 Score=41.72 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=18.3
Q ss_pred cCCc-EEEEcCCCchHHHHHHHHHHHHHh
Q 010876 129 KGRD-LIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 129 ~~~~-~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
..+. +|++++|||||+.. +.+++.+-.
T Consensus 125 ~kRGLviiVGaTGSGKSTt-mAaMi~yRN 152 (375)
T COG5008 125 AKRGLVIIVGATGSGKSTT-MAAMIGYRN 152 (375)
T ss_pred ccCceEEEECCCCCCchhh-HHHHhcccc
Confidence 3344 88899999999976 334454433
No 396
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.59 E-value=0.47 Score=48.45 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=23.4
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
...++|||||+|.+.... ...+.+.+...+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 467899999999986433 334444555444444444433
No 397
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.57 E-value=1.6 Score=43.15 Aligned_cols=110 Identities=14% Similarity=0.179 Sum_probs=59.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
.+.+-+.|+.|+|||.. +-++..... . ..+.+ ++.-+...++++.+.++... ...
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp---~--~~k~R----~HFh~Fm~~vh~~l~~~~~~-----------~~~--- 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLP---I--KRKRR----VHFHEFMLDVHSRLHQLRGQ-----------DDP--- 116 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCC---c--ccccc----ccccHHHHHHHHHHHHHhCC-----------Ccc---
Confidence 45699999999999974 222222111 1 11222 34456667777777776411 000
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhc-CCCCcEEEEcCCCcHHH
Q 010876 210 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEV 285 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~ 285 (498)
+ ..+.+.+ .....+|+|||+|.- +..-.-.+..++..+ ....-+|+.|-+.|+++
T Consensus 117 l--------------~~va~~l------~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 117 L--------------PQVADEL------AKESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred H--------------HHHHHHH------HhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 0 0111111 234568999999942 222123333443332 45677888888888764
No 398
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.47 E-value=0.7 Score=51.13 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=21.4
Q ss_pred HHHHHHHhhc------CCcEEEEcCCCchHHHHHHH
Q 010876 120 QAQGWPMALK------GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 120 Q~~~i~~~l~------~~~~i~~a~TGsGKT~~~~l 149 (498)
|.+-+..+.. ..+.++.+|+|+|||..+-.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~ 227 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEG 227 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHH
Confidence 5555655442 24799999999999986544
No 399
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.41 E-value=0.24 Score=53.70 Aligned_cols=89 Identities=19% Similarity=0.330 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC----C-CCeEE-ecCCCCHHHHHHHHHHHhcCCCcEEEEecc-
Q 010876 325 YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD----G-WPALS-IHGDKSQAERDWVLSEFKAGKSPIMTATDV- 397 (498)
Q Consensus 325 ~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~----~-~~~~~-lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~- 397 (498)
+-.++.+.... .++++++.++|..-+.+.++.|++. + +.+.. +|+.++..+++.++++|.+|..+|||+|+.
T Consensus 113 fg~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 113 FGLLMSLYLAK-KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHHh-cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 33444444443 4579999999999888888888654 2 44433 999999999999999999999999999954
Q ss_pred ccccCC-CC--CCCEEEEcC
Q 010876 398 AARGLD-VK--DVKYVINYD 414 (498)
Q Consensus 398 ~~~Gld-i~--~v~~VI~~~ 414 (498)
+..-.+ +. ..++|+.-|
T Consensus 192 L~k~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 192 LSKRFEELSKLKFDFIFVDD 211 (1187)
T ss_pred HHhhHHHhcccCCCEEEEcc
Confidence 433333 22 345555433
No 400
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.39 E-value=1.7 Score=42.05 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=33.0
Q ss_pred ccccEEEeccchhhhcCC-cHHHHHHHHHhc------CCCCcEEEEcCCCcHHHHHHHHHHh
Q 010876 239 RRVTYLVLDEADRMLDMG-FEPQIKKILSQI------RPDRQTLYWSATWPKEVEHLARQYL 293 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~------~~~~~~i~~SAT~~~~~~~~~~~~~ 293 (498)
.++++||+|=+-++.... ....+.++...+ .+...++.++||...+....+..+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 567899999998765332 234455554432 2445678889997654444445443
No 401
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.28 E-value=0.31 Score=50.37 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=26.5
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
....+++|+||+|+|.... ...+.+.+...++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4577899999999987543 344555555555555555554
No 402
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.27 E-value=0.37 Score=51.09 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=25.5
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCC
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 280 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 280 (498)
....+++||||+|.+.... ...+.+.+...+.... +++.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~ti-fIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAI-FILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeE-EEEEeC
Confidence 4578899999999986543 3445555555444443 444444
No 403
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=93.24 E-value=1.2 Score=38.79 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=74.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH-HHHHHHhcCCCCceEEEEeCCC---CCch
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-QQESTKFGASSKIKSTCIYGGV---PKGP 208 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~-~~~~~~~~~~~~~~~~~~~~~~---~~~~ 208 (498)
+.+--..|=|||.+++=-++..+.. +.+|+|+.=.+.-...= ...+.++ . ++.....-.+. ....
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAaG~--------G~rV~iiQFlKg~~~~GE~~~l~~~-~--~v~~~~~g~~~~~~~~~~ 92 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIAGQ--------GTPVLIVQFLKGGIQQGPDRPIQLG-Q--NLDWVRCDLPRCLDTPHL 92 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHhcC--------CCEEEEEEEecCCCcchHHHHHHhC-C--CcEEEECCCCCeeeCCCc
Confidence 4455668999999988767766554 77888886544321000 1112222 1 22222111000 0000
Q ss_pred hHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc--HHHHHHHHHhcCCCCcEEEEcCCCcHHHH
Q 010876 209 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVE 286 (498)
Q Consensus 209 ~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 286 (498)
..... ......++.... ...-..+++||+||+-...+.++ ...+..+++..++...+|+.--.+|+++.
T Consensus 93 ~~~~~--------~~~~~~~~~a~~-~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Li 163 (178)
T PRK07414 93 DESEK--------KALQELWQYTQA-VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLL 163 (178)
T ss_pred CHHHH--------HHHHHHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHH
Confidence 00000 111122222211 11135689999999998888774 35666777777777788887778888777
Q ss_pred HHHH
Q 010876 287 HLAR 290 (498)
Q Consensus 287 ~~~~ 290 (498)
+.+.
T Consensus 164 e~AD 167 (178)
T PRK07414 164 AIAD 167 (178)
T ss_pred HhCC
Confidence 6543
No 404
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.13 E-value=0.059 Score=47.30 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=30.7
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhccCcc--cccccEEEeccchhhhcC
Q 010876 210 VRDLQKGVEIVIATPGRLIDMLESHNTN--LRRVTYLVLDEADRMLDM 255 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~l~~~l~~~~~~--l~~~~~vI~DE~h~~~~~ 255 (498)
.+.....++|||+++..|++-....... ..+-.+|||||||.+.+.
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 3455667899999999887654432221 234478999999988653
No 405
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.13 E-value=0.14 Score=53.06 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=36.4
Q ss_pred CCCcHHHHHHHHHhh----cCCcEEEEcCCCchHHHHHHHHHHHHHhcC
Q 010876 114 FEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQ 158 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~ 158 (498)
.+|+.+|.+.+..+. .|+-.|+..|||+|||+..+-.++.++...
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 389999999887754 588889999999999998777777776543
No 406
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.11 E-value=0.29 Score=47.72 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=28.0
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 010876 128 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 178 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~L 178 (498)
..+.+++++++||||||+. +-+++.++.. ..+++.+=.+.||
T Consensus 158 ~~~~nili~G~tgSGKTTl-l~aL~~~ip~--------~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTF-TNAALREIPA--------IERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHH-HHHHHhhCCC--------CCeEEEecCCCcc
Confidence 4577999999999999974 3444444332 3456666555555
No 407
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.09 E-value=0.16 Score=53.34 Aligned_cols=80 Identities=25% Similarity=0.479 Sum_probs=62.8
Q ss_pred HHHhcCCCcEEEEeccccccCCCCCCCEE--------EEcCCCCChhHHHHhhcccccCCCc-ceEEEEecc---ccHHH
Q 010876 382 SEFKAGKSPIMTATDVAARGLDVKDVKYV--------INYDFPGSLEDYVHRIGRTGRAGAK-GTAYTFFTA---ANARF 449 (498)
Q Consensus 382 ~~f~~g~~~vLvaT~~~~~Gldi~~v~~V--------I~~~~p~s~~~~~Qr~GR~~R~g~~-g~~~~~~~~---~~~~~ 449 (498)
++|.+|+..|-|-..+++.||.+..-+.| |-+.+|||...-+|..||+.|..+- +--|+|+.. .+.++
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRF 930 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRF 930 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHH
Confidence 57889999999999999999998765444 4577999999999999999998764 566666654 36677
Q ss_pred HHHHHHHHHHhC
Q 010876 450 AKELITILEEAG 461 (498)
Q Consensus 450 ~~~l~~~l~~~~ 461 (498)
+..+.+-|+..+
T Consensus 931 AS~VAKRLESLG 942 (1300)
T KOG1513|consen 931 ASIVAKRLESLG 942 (1300)
T ss_pred HHHHHHHHHhhc
Confidence 777777666543
No 408
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=2.2 Score=43.31 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHH----hhc----C----CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCC
Q 010876 98 VGFPDYVMQEISKAGFFEPTPIQAQGWPM----ALK----G----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 165 (498)
Q Consensus 98 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~----~l~----~----~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 165 (498)
++.+++-++.+...|+..-.+.=.+.+.. +.+ . ..+++.+|.|||||..+.-.++. ..
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~----------S~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS----------SD 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh----------cC
Confidence 46788888877777665444433333322 211 1 24899999999999643322221 24
Q ss_pred CCEEEEEcCcH
Q 010876 166 GPIVLVLAPTR 176 (498)
Q Consensus 166 ~~~vlvl~P~~ 176 (498)
-|.+=+++|..
T Consensus 564 FPFvKiiSpe~ 574 (744)
T KOG0741|consen 564 FPFVKIISPED 574 (744)
T ss_pred CCeEEEeChHH
Confidence 78888888854
No 409
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.07 E-value=0.23 Score=47.87 Aligned_cols=44 Identities=23% Similarity=0.181 Sum_probs=28.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 180 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~ 180 (498)
.|+-+.+.+|+|+|||..++-.+...... +..++|+..-..+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--------g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--------GGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEEcccchhHH
Confidence 34568899999999997655433333222 556788766544444
No 410
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.05 E-value=0.5 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.099 Sum_probs=17.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
-+++.+|.|+|||.++.+ +...+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~-lAk~L~ 63 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA-FARCLN 63 (563)
T ss_pred EEEEECCCCCCHHHHHHH-HHHhhc
Confidence 389999999999987555 333433
No 411
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.04 E-value=0.69 Score=42.36 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=34.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
+.-+++.+++|+|||..++--+...+.. +..++|+... +-..++.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--------g~~~~y~s~e-~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--------GEKAMYISLE-EREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECC-CCHHHHHHHHHHcC
Confidence 4568899999999996544333333322 5568887664 45677777777765
No 412
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.01 E-value=1.9 Score=42.67 Aligned_cols=145 Identities=16% Similarity=0.100 Sum_probs=63.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH---HHHHHHhcCCCCceEEEE--eCCCCCch
Q 010876 134 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI---QQESTKFGASSKIKSTCI--YGGVPKGP 208 (498)
Q Consensus 134 i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~---~~~~~~~~~~~~~~~~~~--~~~~~~~~ 208 (498)
++.++.|+|||....+.++.++...+ ....++++.....+...+ ...+..+... .+..... .....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-----PGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKI--- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-----S--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEE---
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-----CCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcE---
Confidence 46789999999887777777776642 124566664445555542 2333333333 2222111 11100
Q ss_pred hHHHHhcCCcEEEcChHHH--HHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCC--cHH
Q 010876 209 QVRDLQKGVEIVIATPGRL--IDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW--PKE 284 (498)
Q Consensus 209 ~~~~~~~~~~Ivi~T~~~l--~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~--~~~ 284 (498)
.+.++..|.+.+.+.- ..-+. =..++++++||+-.+.+..+...+......... ...+++|.|+ ...
T Consensus 72 ---~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~~~~ 142 (384)
T PF03237_consen 72 ---ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNPGGW 142 (384)
T ss_dssp ---EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSH
T ss_pred ---EecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCCCCc
Confidence 0134455666663321 11111 146779999998887654444444333333222 2222444432 334
Q ss_pred HHHHHHHHhcCC
Q 010876 285 VEHLARQYLYNP 296 (498)
Q Consensus 285 ~~~~~~~~~~~~ 296 (498)
...+......+.
T Consensus 143 ~~~~~~~~~~~~ 154 (384)
T PF03237_consen 143 FYEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHHCTS
T ss_pred eeeeeehhhcCC
Confidence 555555555544
No 413
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.93 E-value=1.3 Score=44.96 Aligned_cols=38 Identities=29% Similarity=0.169 Sum_probs=24.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 173 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~ 173 (498)
.|.-+++.|++|+|||..++-.+...... .+..|+|++
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~-------~g~~v~~fS 230 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALR-------EGKPVLFFS 230 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEE
Confidence 45558889999999997644433333222 144577776
No 414
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.89 E-value=0.41 Score=49.26 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
.+.+++.+|+|+|||+.+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 457999999999999753
No 415
>PRK09354 recA recombinase A; Provisional
Probab=92.84 E-value=0.33 Score=47.25 Aligned_cols=43 Identities=23% Similarity=0.156 Sum_probs=29.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 180 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~ 180 (498)
|+-+.+.+|+|||||..++..+...... +..++|+..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--------GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEECCccchHH
Confidence 4568899999999997755544433322 566888877665554
No 416
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.81 E-value=0.15 Score=48.49 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
+.+++++|||+|||+....
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588899999999976443
No 417
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.78 E-value=0.78 Score=44.40 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=34.9
Q ss_pred EEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCC
Q 010876 219 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 280 (498)
Q Consensus 219 Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 280 (498)
|-|-....+.+.+..... ....+++|+|++|.|.... ...+.+++...+ ...+|++|..
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECC
Confidence 333344445555554333 3578999999999987543 455566666655 5545555443
No 418
>PRK06904 replicative DNA helicase; Validated
Probab=92.74 E-value=2 Score=44.12 Aligned_cols=115 Identities=18% Similarity=0.059 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCC-CCCch
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG-VPKGP 208 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 208 (498)
|.=+++.|.||.|||..++-.+...... .+..|+|++.- .-..|+...+-..... +....+..+ .-...
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~-------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMA-------SEKPVLVFSLE-MPAEQIMMRMLASLSR--VDQTKIRTGQNLDQQ 290 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHh-------cCCeEEEEecc-CCHHHHHHHHHHhhCC--CCHHHhccCCCCCHH
Confidence 3447888999999997544333322222 14457777643 3334444443322212 111111122 11112
Q ss_pred hH-------HHHhcCCcEEE-----cChHHHHHHHhccCcccccccEEEeccchhhhc
Q 010876 209 QV-------RDLQKGVEIVI-----ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 254 (498)
Q Consensus 209 ~~-------~~~~~~~~Ivi-----~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~ 254 (498)
.+ ..+.....+.| .|+..+.....+.......+++||||=.+.+..
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 21 22222344555 345555443322111122578999999987754
No 419
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.72 E-value=0.97 Score=46.17 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=52.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
|.-+++.+++|+|||...+. ++..+.. .+.+++|+..- +-..|+.....+++-... ...+..
T Consensus 94 GsvilI~G~pGsGKTTL~lq-~a~~~a~-------~g~kvlYvs~E-Es~~qi~~ra~rlg~~~~--~l~~~~------- 155 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQ-VACQLAK-------NQMKVLYVSGE-ESLQQIKMRAIRLGLPEP--NLYVLS------- 155 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHH-HHHHHHh-------cCCcEEEEECc-CCHHHHHHHHHHcCCChH--HeEEcC-------
Confidence 45689999999999976443 3333322 13468888764 445677666666542111 000100
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhc
Q 010876 210 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 254 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~ 254 (498)
-.+.+.+...+.. .++++||+|.+..+..
T Consensus 156 -----------e~~~~~I~~~i~~-----~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 156 -----------ETNWEQICANIEE-----ENPQACVIDSIQTLYS 184 (454)
T ss_pred -----------CCCHHHHHHHHHh-----cCCcEEEEecchhhcc
Confidence 0233445444432 2467899999997653
No 420
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.71 E-value=0.086 Score=55.21 Aligned_cols=156 Identities=16% Similarity=0.170 Sum_probs=87.8
Q ss_pred CCCcHHHHHHHHHhhc--------CC--cEEEEcCCCchH--HHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHH
Q 010876 114 FEPTPIQAQGWPMALK--------GR--DLIGIAETGSGK--TLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 181 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~--------~~--~~i~~a~TGsGK--T~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q 181 (498)
..+...|.+++-.+-+ |. .+++-...|.|| |.+- + ++...++ ..+++|++.-+..|-..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAg-i-IfeNyLk-------GRKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAG-I-IFENYLK-------GRKRALWFSVSSDLKFD 333 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEE-E-Eehhhhc-------ccceeEEEEeccccccc
Confidence 4678889998866442 33 256655555555 5432 2 2333333 25679999999888877
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCCCchh-HHHHhcCCcEEEcChHHHHHHHhcc-C-----------cccccc-cEEEec
Q 010876 182 IQQESTKFGASSKIKSTCIYGGVPKGPQ-VRDLQKGVEIVIATPGRLIDMLESH-N-----------TNLRRV-TYLVLD 247 (498)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ivi~T~~~l~~~l~~~-~-----------~~l~~~-~~vI~D 247 (498)
....++..+.. +|.|..+..-....-. ...-.-.-.|+++|+..|+-.-... . +.-.++ .+||||
T Consensus 334 AERDL~DigA~-~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfD 412 (1300)
T KOG1513|consen 334 AERDLRDIGAT-GIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFD 412 (1300)
T ss_pred hhhchhhcCCC-CccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEeh
Confidence 77777776533 3555433211100000 0000111369999997775433211 0 001112 589999
Q ss_pred cchhhhcC---------CcHHHHHHHHHhcCCCCcEEEEcCC
Q 010876 248 EADRMLDM---------GFEPQIKKILSQIRPDRQTLYWSAT 280 (498)
Q Consensus 248 E~h~~~~~---------~~~~~~~~i~~~~~~~~~~i~~SAT 280 (498)
|||+..+. ..+..+..+-+.+ ++.+++..|||
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~L-P~ARVVYASAT 453 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKL-PNARVVYASAT 453 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhC-CCceEEEeecc
Confidence 99986651 1345555565555 57779999999
No 421
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.68 E-value=0.32 Score=46.93 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 180 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~ 180 (498)
|+-+.+.+|+|+|||..++..+...... +..++|+.+-..+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--------g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--------GGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCCEEEECccccHHH
Confidence 4568899999999997655434333222 556888887655544
No 422
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.67 E-value=1.3 Score=45.84 Aligned_cols=124 Identities=16% Similarity=0.219 Sum_probs=75.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH----HhcCCCCceEEEEeCCCCC
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST----KFGASSKIKSTCIYGGVPK 206 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~----~~~~~~~~~~~~~~~~~~~ 206 (498)
+-.+..-|--.|||+ |+.|++..++..- .+-++.|++.-+-.++-+.+++. ++.+...+ ...
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s~-----~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v--i~~------ 268 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKNI-----IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT--IEN------ 268 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHhh-----cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce--eee------
Confidence 457777899999996 4777877777632 47789999999988777666654 33322111 110
Q ss_pred chhHHHHhcCCcEEEcChHH-----HHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhc-CCCCcEEEEcCC
Q 010876 207 GPQVRDLQKGVEIVIATPGR-----LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSAT 280 (498)
Q Consensus 207 ~~~~~~~~~~~~Ivi~T~~~-----l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 280 (498)
++..|.+.-|+. +......+...=++++++++||||-+. ...+..|+-.+ .++.++|+.|.|
T Consensus 269 --------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 269 --------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred --------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCC
Confidence 112344433322 111112223334678999999999776 33444444433 367788888877
No 423
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.66 E-value=0.22 Score=48.06 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHHH
Q 010876 131 RDLIGIAETGSGKTLAY 147 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~ 147 (498)
.++++.+|+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999753
No 424
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.64 E-value=0.38 Score=47.25 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 178 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~L 178 (498)
+..+++++|||||||+. +..++.++... ...+++.+-...|+
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 45689999999999975 33344444321 13456666555454
No 425
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.63 E-value=0.91 Score=46.95 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=40.6
Q ss_pred HHHHHhhc-----CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 122 QGWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 122 ~~i~~~l~-----~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
..++.++. |..+++.+|+|+|||+..+--+...+. ++.+++|++ ..|-..|+...++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~--------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA--------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 34555554 456899999999999764443332222 256788877 4577788888888875
No 426
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.62 E-value=0.59 Score=43.47 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~ 146 (498)
-.|+.+++.++.|+|||..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4688999999999999973
No 427
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.57 E-value=1.1 Score=49.54 Aligned_cols=19 Identities=37% Similarity=0.256 Sum_probs=16.1
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
.++++.+|+|+|||..+..
T Consensus 201 ~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 4799999999999987544
No 428
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.47 E-value=0.83 Score=44.59 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=26.6
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcC
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 279 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 279 (498)
....+++||||+|++.... ...+.+.+...++...+|+.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 4567899999999987543 4455566665555555555443
No 429
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.41 E-value=0.71 Score=51.28 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=15.8
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
.+.++.+|+|+|||..+..
T Consensus 195 ~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 4799999999999976543
No 430
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.39 E-value=0.21 Score=48.86 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=29.1
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 179 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La 179 (498)
+..+.+++++++||||||+. +-+++..+.. ..+++.+=.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~--------~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIPP--------QERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccCC--------CCCEEEECCCcccc
Confidence 34577899999999999974 3333333221 34577777777663
No 431
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.34 E-value=0.18 Score=55.69 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=74.0
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCc-EEEEeccccccCCCCCCCEEEEcCC
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP-IMTATDVAARGLDVKDVKYVINYDF 415 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~-vLvaT~~~~~Gldi~~v~~VI~~~~ 415 (498)
...++|||+.--..-+.+...+...++....--+. ++....+..|++ ++ +|+-+...+.|+|+-++.+|+..++
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecc
Confidence 34589999988777777777776665554433332 233445666665 55 4566788899999999999999999
Q ss_pred CCChhHHHHhhcccccCCCcceEEE
Q 010876 416 PGSLEDYVHRIGRTGRAGAKGTAYT 440 (498)
Q Consensus 416 p~s~~~~~Qr~GR~~R~g~~g~~~~ 440 (498)
-.++..-.|.+||+.|.|++-..++
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT~V 1319 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPTFV 1319 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccchhh
Confidence 9999999999999999999754443
No 432
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.33 E-value=0.24 Score=52.03 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=26.5
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
+++..++|+||+-.-+|......+.+.+....++.-+++.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 45667888888887777666666666666554555444443
No 433
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.25 E-value=0.72 Score=43.33 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=57.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCc---HHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT---RELAVQIQQESTKFGASSKIKSTCIYGGVPK 206 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~---~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (498)
|.=+++.|.||.|||..++-.+.+.+... +..|+|++.- .+++..+....... . ...+..+...
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-------~~~vly~SlEm~~~~l~~R~la~~s~v----~--~~~i~~g~l~ 85 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNG-------GYPVLYFSLEMSEEELAARLLARLSGV----P--YNKIRSGDLS 85 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTT-------SSEEEEEESSS-HHHHHHHHHHHHHTS----T--HHHHHCCGCH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHHHhhcc----h--hhhhhccccC
Confidence 34488899999999976555444444431 4668888863 34443333222211 1 1001111111
Q ss_pred chhH-------HHHhcCCcEEE-c----ChHHHHHHHhccCcccccccEEEeccchhhhcC
Q 010876 207 GPQV-------RDLQKGVEIVI-A----TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 255 (498)
Q Consensus 207 ~~~~-------~~~~~~~~Ivi-~----T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~ 255 (498)
.... ..+.. ..++| . |++.+...+.........+++||||=.|.+...
T Consensus 86 ~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 86 DEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 1111 11222 23443 3 344555554433222367889999999987763
No 434
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.22 E-value=1.3 Score=40.73 Aligned_cols=22 Identities=36% Similarity=0.364 Sum_probs=17.0
Q ss_pred hhcCC-cEEEEcCCCchHHHHHH
Q 010876 127 ALKGR-DLIGIAETGSGKTLAYL 148 (498)
Q Consensus 127 ~l~~~-~~i~~a~TGsGKT~~~~ 148 (498)
+..++ -+.++++-|||||...-
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH
Confidence 34455 47889999999998755
No 435
>PF05729 NACHT: NACHT domain
Probab=92.20 E-value=1.9 Score=36.86 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=23.4
Q ss_pred EEEeccchhhhcCC-------cHHHHHHHHHh-cCCCCcEEEEcCC
Q 010876 243 YLVLDEADRMLDMG-------FEPQIKKILSQ-IRPDRQTLYWSAT 280 (498)
Q Consensus 243 ~vI~DE~h~~~~~~-------~~~~~~~i~~~-~~~~~~~i~~SAT 280 (498)
++|+|-+|.+.... +...+..++.. +.+..++++.|.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 49999999887632 22345555554 4456666665554
No 436
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.20 E-value=0.61 Score=51.01 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
.+.+++.+|+|+|||+.+
T Consensus 487 ~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999753
No 437
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.20 E-value=0.71 Score=51.23 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=68.5
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccccCCCC
Q 010876 331 LLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVK 405 (498)
Q Consensus 331 ~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gldi~ 405 (498)
..+....+++|.|.|+|---|++-++.+++ ..+++..+.--.+.++...+++...+|+++|+|.| .++..+|-+.
T Consensus 636 AFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fk 715 (1139)
T COG1197 636 AFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFK 715 (1139)
T ss_pred HHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEe
Confidence 445566778999999998777666666654 45667888888899999999999999999999999 7899999999
Q ss_pred CCCEEE
Q 010876 406 DVKYVI 411 (498)
Q Consensus 406 ~v~~VI 411 (498)
++-+||
T Consensus 716 dLGLlI 721 (1139)
T COG1197 716 DLGLLI 721 (1139)
T ss_pred cCCeEE
Confidence 999988
No 438
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=1.2 Score=45.97 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=31.8
Q ss_pred CcCCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHH
Q 010876 91 PVKSFRDVGFPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 91 ~~~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~ 146 (498)
|..+|++.+--+.+...|.-+ .+. +|-+.+++-. -.-..+++++|+|||||+.
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK--~pd~~k~lGi-~~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIK--RPDLFKALGI-DAPSGVLLCGPPGCGKTLL 561 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhcc--CHHHHHHhCC-CCCCceEEeCCCCccHHHH
Confidence 456788887666666555422 222 2233333322 1234699999999999975
No 439
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.20 E-value=0.15 Score=46.98 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=12.1
Q ss_pred EEEEcCCCchHHHH
Q 010876 133 LIGIAETGSGKTLA 146 (498)
Q Consensus 133 ~i~~a~TGsGKT~~ 146 (498)
+++.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47889999999985
No 440
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.18 E-value=0.46 Score=50.78 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.7
Q ss_pred EEEEcCCCchHHHHHHH
Q 010876 133 LIGIAETGSGKTLAYLL 149 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l 149 (498)
+|+.||.|+|||.++.+
T Consensus 43 YLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 78999999999987655
No 441
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.12 E-value=0.63 Score=46.00 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=17.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
.+++.||.|+|||..+.. +...+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~~-la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARI-FAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 478999999999976443 344443
No 442
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.10 E-value=0.41 Score=45.08 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=24.4
Q ss_pred cHHHHHHHHHhhc-C-CcEEEEcCCCchHHHHHHHHHHHHH
Q 010876 117 TPIQAQGWPMALK-G-RDLIGIAETGSGKTLAYLLPAIVHV 155 (498)
Q Consensus 117 ~~~Q~~~i~~~l~-~-~~~i~~a~TGsGKT~~~~l~~l~~~ 155 (498)
.+.|.+.+..++. . ..+++.++||||||.. +..++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 4445555655543 3 3488999999999975 33344554
No 443
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.07 E-value=1.4 Score=40.75 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=31.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCC----CCCCCEEEEEc---CcHHHHHHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLA----PGDGPIVLVLA---PTRELAVQIQQEST 187 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~----~~~~~~vlvl~---P~~~La~q~~~~~~ 187 (498)
-.++.||.|+|||..++-.++....-.+... ...+.+|||++ |..++...+.....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 4688999999999775554444332222211 12355688888 44444444443333
No 444
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.06 E-value=1.1 Score=48.97 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 010876 129 KGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~ 146 (498)
.++.+++.+|+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 356799999999999975
No 445
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=92.06 E-value=0.39 Score=42.07 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=23.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 175 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~ 175 (498)
.++.+|+.||||.-.+- .+..... .+.+++++-|.
T Consensus 4 ~~i~GpM~sGKS~eLi~-~~~~~~~-------~~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIR-RIHRYEI-------AGKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHHHHH-HHHHHHH-------TT-EEEEEEES
T ss_pred EEEECCcCChhHHHHHH-HHHHHHh-------CCCeEEEEEec
Confidence 47789999999986333 3443333 26779998885
No 446
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.01 E-value=0.28 Score=50.44 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=14.5
Q ss_pred EEEEcCCCchHHHHHHH
Q 010876 133 LIGIAETGSGKTLAYLL 149 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l 149 (498)
+++.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999987655
No 447
>PRK10436 hypothetical protein; Provisional
Probab=91.97 E-value=0.35 Score=49.32 Aligned_cols=40 Identities=35% Similarity=0.434 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHhhc--CCcEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 116 PTPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~--~~~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
+.+.|.+.+..++. +.-+++++|||||||+. +..++.++.
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhC
Confidence 34455666655543 23488999999999986 344566654
No 448
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.93 E-value=0.82 Score=50.69 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
.+.++.+|+|+|||..+..
T Consensus 200 ~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 3799999999999986543
No 449
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.88 E-value=0.98 Score=46.57 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=62.0
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cccccC-------CCCCCC
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARGL-------DVKDVK 408 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gl-------di~~v~ 408 (498)
..+.+||+++++.-+....+.|+..++++..++++.+..++..++.....++.+|+++|. .+.... ....+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 356899999999999999999999999999999999999999999999999999999995 222222 345566
Q ss_pred EEEE
Q 010876 409 YVIN 412 (498)
Q Consensus 409 ~VI~ 412 (498)
+||.
T Consensus 130 ~iVi 133 (470)
T TIGR00614 130 LIAV 133 (470)
T ss_pred EEEE
Confidence 6653
No 450
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.84 E-value=0.72 Score=46.19 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
.+.+++.+|+|+|||+.+
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 356999999999999763
No 451
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=0.72 Score=45.92 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=31.8
Q ss_pred cccEEEeccchhhhcCC--------cHHHHHHHHHh----cCCCCcEEEEcCC-CcHHHHHHHHH
Q 010876 240 RVTYLVLDEADRMLDMG--------FEPQIKKILSQ----IRPDRQTLYWSAT-WPKEVEHLARQ 291 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~--------~~~~~~~i~~~----~~~~~~~i~~SAT-~~~~~~~~~~~ 291 (498)
.+.++++||+|.++... .....+.++.. ..++-+++++.|| .|.++.+-++.
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R 309 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR 309 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH
Confidence 56789999999887431 22233333322 2356688999999 45555555544
No 452
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.81 E-value=0.88 Score=45.04 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~ 147 (498)
.|+.+++.+|+|+|||...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred CCCEEEEECCCCCChhHHH
Confidence 6888999999999999753
No 453
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.80 E-value=0.53 Score=46.78 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=20.5
Q ss_pred HHhhcCCcEEEEcCCCchHHHHHHH
Q 010876 125 PMALKGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 125 ~~~l~~~~~i~~a~TGsGKT~~~~l 149 (498)
+.+..+.|++..+|+|+|||-.|.-
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHH
Confidence 5666788999999999999965543
No 454
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.66 E-value=2.1 Score=43.72 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=73.2
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH---HHH
Q 010876 137 AETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDL 213 (498)
Q Consensus 137 a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 213 (498)
--.++||+..-++++.+.+... -.|.+||.+-+.+-|.|+++.+. ...++.+.++++..+..+.. ..+
T Consensus 364 elvF~gse~~K~lA~rq~v~~g------~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~F 434 (593)
T KOG0344|consen 364 ELVFCGSEKGKLLALRQLVASG------FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERF 434 (593)
T ss_pred hheeeecchhHHHHHHHHHhcc------CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHH
Confidence 3457888887777655554442 35668999999999999999887 34468899999986654433 333
Q ss_pred hc-CCcEEEcChHHHHHHHhccCcccccccEEEeccchh
Q 010876 214 QK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 251 (498)
Q Consensus 214 ~~-~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~ 251 (498)
+. ...++||| +++.++ .++..+.+||-+++-.
T Consensus 435 R~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 435 RIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred hccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 33 36799999 888776 6799999999987764
No 455
>PRK13764 ATPase; Provisional
Probab=91.62 E-value=0.46 Score=49.85 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
.+++++++++||||||+. +.+++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 356799999999999974 344555554
No 456
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.53 E-value=2.9 Score=42.02 Aligned_cols=144 Identities=16% Similarity=0.077 Sum_probs=76.3
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 010876 103 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 182 (498)
Q Consensus 103 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~ 182 (498)
.+++.+++ ++-.+-..|.++.-..-.|.. .+.+=.|||||...++-+ .++.. .....+++|.+-|+.|+.++
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Ka-a~lh~-----knPd~~I~~Tfftk~L~s~~ 222 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKA-AELHS-----KNPDSRIAFTFFTKILASTM 222 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHH-HHHhc-----CCCCceEEEEeehHHHHHHH
Confidence 34444432 334455567776544444544 567788999997533322 22222 12356799999999999999
Q ss_pred HHHHHHhcCC--------CCceEEEEeCCCCCchhHHH---HhcCCcEEEcCh----HHHHHHHhccCcccccccEEEec
Q 010876 183 QQESTKFGAS--------SKIKSTCIYGGVPKGPQVRD---LQKGVEIVIATP----GRLIDMLESHNTNLRRVTYLVLD 247 (498)
Q Consensus 183 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivi~T~----~~l~~~l~~~~~~l~~~~~vI~D 247 (498)
...+.+|+.. ..+.+.--.||......... ...-..+-++-- .-+...+.....+..-+++|.+|
T Consensus 223 r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilID 302 (660)
T COG3972 223 RTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILID 302 (660)
T ss_pred HHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEec
Confidence 8887776421 12333334455443322211 111122222211 11112222222336678999999
Q ss_pred cchhhhc
Q 010876 248 EADRMLD 254 (498)
Q Consensus 248 E~h~~~~ 254 (498)
|++-..+
T Consensus 303 E~QDFP~ 309 (660)
T COG3972 303 ESQDFPQ 309 (660)
T ss_pred ccccCCH
Confidence 9996543
No 457
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.45 E-value=0.72 Score=43.27 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=32.5
Q ss_pred cEEEeccchhhhcCCcHHHHHHHHHhcC-------CCCcEEEEcCCCcHHHHHHHHHHh
Q 010876 242 TYLVLDEADRMLDMGFEPQIKKILSQIR-------PDRQTLYWSATWPKEVEHLARQYL 293 (498)
Q Consensus 242 ~~vI~DE~h~~~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~ 293 (498)
+++||||+|.|-.. ....+.-.+...+ ...-.|++|.+...++.+++..+.
T Consensus 180 slFIFDE~DKmp~g-Lld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~ 237 (344)
T KOG2170|consen 180 SLFIFDEVDKLPPG-LLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENA 237 (344)
T ss_pred ceEEechhhhcCHh-HHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHH
Confidence 58999999987632 2334444444322 234468999998877776665554
No 458
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=91.30 E-value=0.22 Score=51.01 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=25.0
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcC-CCCcEEEEcCC
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-PDRQTLYWSAT 280 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT 280 (498)
..++++.|+||+|++....|. .+++.+. |..++++.=||
T Consensus 117 ~~ryKVyiIDEvHMLS~~afN----ALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFN----ALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHHHHH----HHhcccccCccCeEEEEec
Confidence 567899999999998865554 3333332 33445555555
No 459
>PRK08840 replicative DNA helicase; Provisional
Probab=91.27 E-value=3.2 Score=42.50 Aligned_cols=50 Identities=18% Similarity=0.027 Sum_probs=27.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 186 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~ 186 (498)
.|.=+++.|.||.|||..++-.+...... .+..|+|++.- .-..|+...+
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~-------~~~~v~~fSlE-Ms~~ql~~Rl 265 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMD-------QDKPVLIFSLE-MPAEQLMMRM 265 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHh-------CCCeEEEEecc-CCHHHHHHHH
Confidence 34457888999999997654333332222 14457777643 2234444433
No 460
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.24 E-value=0.22 Score=51.35 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=39.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.+++++||||||||..+++|.+... ...+||.=|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~----------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY----------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc----------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4699999999999999999876431 1148888898899887777776654
No 461
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=0.56 Score=49.19 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=38.2
Q ss_pred EEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHh
Q 010876 198 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 267 (498)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~ 267 (498)
....||......++--+ -.-|=+-|+++.+-+...... --++++||+|.|...-.+.--..++.-
T Consensus 380 R~sLGGvrDEAEIRGHR--RTYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ss~rGDPaSALLEV 444 (782)
T COG0466 380 RISLGGVRDEAEIRGHR--RTYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMGSSFRGDPASALLEV 444 (782)
T ss_pred EEecCccccHHHhcccc--ccccccCChHHHHHHHHhCCc---CCeEEeechhhccCCCCCChHHHHHhh
Confidence 34456665544443322 234557799998877664331 237999999999875444444444433
No 462
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.20 E-value=1.4 Score=37.20 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=24.0
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQI 268 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~ 268 (498)
..+.+++|+||.-.-+|......+..++..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 4566899999999888876677777777665
No 463
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.18 E-value=1.3 Score=43.95 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=17.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
.+++.||.|+|||..+.. +...+.
T Consensus 41 ~~L~~G~~G~GKt~~a~~-la~~l~ 64 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARI-LARKIN 64 (367)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 588999999999976443 344433
No 464
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.11 E-value=1.4 Score=43.59 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
.|+..++.+|.|+|||..+.. +...+.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~-Ian~I~ 194 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQN-IANSIT 194 (416)
T ss_pred cCceEEEeCCCCCChhHHHHH-HHHHHH
Confidence 578899999999999975322 444443
No 465
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.07 E-value=0.62 Score=45.50 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~ 148 (498)
..+++.+|+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999997644
No 466
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=1.1 Score=43.13 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
-+.+++.+|+|+|||+.+
T Consensus 185 PKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 467999999999999853
No 467
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=90.92 E-value=1.2 Score=46.19 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 010876 131 RDLIGIAETGSGKTLAY 147 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~ 147 (498)
+.+++.+|+|+|||+.+
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 56999999999999753
No 468
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.92 E-value=0.85 Score=42.52 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.2
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
++++.+|+|.|||..+.+
T Consensus 54 HvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred eEEeeCCCCCcHHHHHHH
Confidence 499999999999976554
No 469
>PF12846 AAA_10: AAA-like domain
Probab=90.72 E-value=0.36 Score=46.32 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=29.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 180 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~ 180 (498)
.+++++|+||+|||.... .++..+... +..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHHH
Confidence 578999999999997755 445444442 566788766655443
No 470
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.68 E-value=0.36 Score=42.47 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=29.1
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCC-CCcEEEEcCC
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRP-DRQTLYWSAT 280 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT 280 (498)
.+.+++++||...-++......+...+..+.. ..++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 56789999999988887666666666655533 3566666554
No 471
>PRK08506 replicative DNA helicase; Provisional
Probab=90.60 E-value=2.8 Score=43.14 Aligned_cols=113 Identities=18% Similarity=0.098 Sum_probs=54.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
|.-+++.|.||.|||..++-.+. ++.. .+..|+|++.- .-+.|+...+-..... +....+..+.-....
T Consensus 192 G~LivIaarpg~GKT~fal~ia~-~~~~-------~g~~V~~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~~~l~~~e 260 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMAL-KALN-------QDKGVAFFSLE-MPAEQLMLRMLSAKTS--IPLQNLRTGDLDDDE 260 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHH-HHHh-------cCCcEEEEeCc-CCHHHHHHHHHHHhcC--CCHHHHhcCCCCHHH
Confidence 34488889999999976554333 3332 14457777643 3334444444322111 111111111111111
Q ss_pred H-------HHHhcCCcEEEc-----ChHHHHHHHhccCcccccccEEEeccchhhhc
Q 010876 210 V-------RDLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 254 (498)
Q Consensus 210 ~-------~~~~~~~~Ivi~-----T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~ 254 (498)
+ ..+.+ ..+.|- |+..+...+.+.......+++||||=.+.|..
T Consensus 261 ~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 261 WERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 1 12222 345542 44455444332111123578999999997753
No 472
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.56 E-value=0.48 Score=48.80 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHhhcCC-c-EEEEcCCCchHHHHHHHHHHHHH
Q 010876 116 PTPIQAQGWPMALKGR-D-LIGIAETGSGKTLAYLLPAIVHV 155 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~~~-~-~i~~a~TGsGKT~~~~l~~l~~~ 155 (498)
+.+-|.+.+..++... . +++++|||||||+. +..++..+
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 3566777777766543 3 78999999999975 33344444
No 473
>PRK09087 hypothetical protein; Validated
Probab=90.55 E-value=0.81 Score=41.97 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=24.7
Q ss_pred cEEEeccchhhhcCCcHHHHHHHHHhcCC-CCcEEEEcCCCcHH
Q 010876 242 TYLVLDEADRMLDMGFEPQIKKILSQIRP-DRQTLYWSATWPKE 284 (498)
Q Consensus 242 ~~vI~DE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~ 284 (498)
++|++||+|.+... ...+..++..+.. ..++|+.|.+.|..
T Consensus 89 ~~l~iDDi~~~~~~--~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 89 GPVLIEDIDAGGFD--ETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred CeEEEECCCCCCCC--HHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 37999999976322 4556666665544 45555555555543
No 474
>CHL00176 ftsH cell division protein; Validated
Probab=90.48 E-value=2.7 Score=44.87 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q 010876 131 RDLIGIAETGSGKTLAY 147 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~ 147 (498)
+.+++.+|+|+|||+.+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999754
No 475
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.45 E-value=3.4 Score=40.27 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=30.6
Q ss_pred ccccEEEeccchhhhcCC--cHHHHHHHHHhcCCCCcEEEEcCCCcHH
Q 010876 239 RRVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATWPKE 284 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 284 (498)
...-++|+|-|+.+-+++ ..+.+-++-..++...-.+.+|+++.+.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 345689999999999886 2233334444445555668888887653
No 476
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.44 E-value=2.2 Score=45.05 Aligned_cols=38 Identities=34% Similarity=0.447 Sum_probs=29.9
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEE
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTL 275 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i 275 (498)
+++..++|+|||-.-+|..-+..+.+.+..+..++-++
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVl 657 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVL 657 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEE
Confidence 56778999999999998887888888887776664333
No 477
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=90.44 E-value=2.7 Score=38.48 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=44.9
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHh
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 293 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 293 (498)
++...+||+||--.=+|.-....++..+..++..-.+|+||.-.-..+++++...+
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ll 201 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLL 201 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhh
Confidence 56778999999988777766778888888888777888888887777888877665
No 478
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=90.39 E-value=3.2 Score=42.32 Aligned_cols=112 Identities=17% Similarity=0.055 Sum_probs=53.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
|.-+++.|+||+|||..++--+...... .+..+++++.- .-..|+.+.+.......... .+..+.-....
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~-------~g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~~--~~~~g~l~~~~ 264 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK-------EGKPVAFFSLE-MSAEQLAMRMLSSESRVDSQ--KLRTGKLSDED 264 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh-------CCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHH--HhccCCCCHHH
Confidence 4458889999999996544333333332 14457777642 23334444443332221111 11111111111
Q ss_pred H-------HHHhcCCcEEE-----cChHHHHHHHhccCcccccccEEEeccchhhh
Q 010876 210 V-------RDLQKGVEIVI-----ATPGRLIDMLESHNTNLRRVTYLVLDEADRML 253 (498)
Q Consensus 210 ~-------~~~~~~~~Ivi-----~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~ 253 (498)
. ..+.+ ..+.| .|++.+...+...... ..+++||||=.+.+.
T Consensus 265 ~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 265 WEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 1 12222 34444 2444554443322111 247899999998775
No 479
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.31 E-value=0.64 Score=41.22 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=25.0
Q ss_pred CCcHHHHHHHHHhh-cCCcEEEEcCCCchHHHH
Q 010876 115 EPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l-~~~~~i~~a~TGsGKT~~ 146 (498)
.+.+-|.+.+.... .+..++++++||||||+.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 45666777777655 567899999999999975
No 480
>PRK07004 replicative DNA helicase; Provisional
Probab=90.31 E-value=2.2 Score=43.72 Aligned_cols=38 Identities=21% Similarity=0.069 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
|.-+++.|.||+|||..++-.+...... .+..++|++.
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~-------~~~~v~~fSl 250 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVE-------YGLPVAVFSM 250 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHH-------cCCeEEEEeC
Confidence 4448889999999997544333332222 1445777653
No 481
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.26 E-value=1.5 Score=40.04 Aligned_cols=45 Identities=29% Similarity=0.172 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 176 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~ 176 (498)
|+-+.+.+++|+|||..++..+...+.... . .+....++|+....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~-~-~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGE-L-GGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccc-c-CCCcceEEEEecCC
Confidence 456899999999999765543333322210 0 01125578877643
No 482
>COG1485 Predicted ATPase [General function prediction only]
Probab=90.19 E-value=9 Score=37.11 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=60.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 210 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (498)
+.+-+.++.|.|||.. +-++-+...- . .+ .-++.-.-..++++.+..+....
T Consensus 66 ~GlYl~GgVGrGKT~L--MD~Fy~~lp~---~--~k----~R~HFh~FM~~vH~~l~~l~g~~----------------- 117 (367)
T COG1485 66 RGLYLWGGVGRGKTML--MDLFYESLPG---E--RK----RRLHFHRFMARVHQRLHTLQGQT----------------- 117 (367)
T ss_pred ceEEEECCCCccHHHH--HHHHHhhCCc---c--cc----ccccHHHHHHHHHHHHHHHcCCC-----------------
Confidence 5688999999999973 3233222210 0 11 22566677888888888764111
Q ss_pred HHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHh-cCCCCcEEEEcCCCcHHH
Q 010876 211 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ-IRPDRQTLYWSATWPKEV 285 (498)
Q Consensus 211 ~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~ 285 (498)
+.+-. +.+- ...+..+++|||+|. .|-+=.-.+..+++. +.....++..|-|.|+++
T Consensus 118 -------dpl~~----iA~~------~~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 118 -------DPLPP----IADE------LAAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred -------CccHH----HHHH------HHhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 11100 1111 134667899999993 221111122233322 235788999999998764
No 483
>PRK08006 replicative DNA helicase; Provisional
Probab=90.07 E-value=5.3 Score=41.08 Aligned_cols=114 Identities=16% Similarity=0.043 Sum_probs=53.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
|.=+++.|.+|.|||..++-.+...... .+..|+|++.- .-..|+.+.+-..... +....+..+.-....
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~-------~g~~V~~fSlE-M~~~ql~~Rlla~~~~--v~~~~i~~~~l~~~e 293 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAML-------QDKPVLIFSLE-MPGEQIMMRMLASLSR--VDQTRIRTGQLDDED 293 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEecc-CCHHHHHHHHHHHhcC--CCHHHhhcCCCCHHH
Confidence 3447888999999996544433333222 14457777642 2233444333322111 111111112111122
Q ss_pred HH-------HHhcCCcEEEc-----ChHHHHHHHhccCcccccccEEEeccchhhh
Q 010876 210 VR-------DLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 253 (498)
Q Consensus 210 ~~-------~~~~~~~Ivi~-----T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~ 253 (498)
+. .+.....+.|- |+..+.....+-......+++||||=.|.+.
T Consensus 294 ~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 294 WARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 21 22123445553 4444444332211111257899999999875
No 484
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.06 E-value=0.86 Score=42.83 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
.|.-+++.+++|+|||..++-.+...+.. +.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--------Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--------GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--------CCcEEEEEe
Confidence 35568999999999997544433333322 556888773
No 485
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.05 E-value=0.24 Score=52.19 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=40.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
++++++||||||||..+++|.+.... ..++|+=|--|+........++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~----------~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE----------DSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC----------CCEEEEeCcHHHHHHHHHHHHHCC
Confidence 46999999999999999999876532 238888899999988877777654
No 486
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.04 E-value=1.2 Score=47.13 Aligned_cols=41 Identities=37% Similarity=0.453 Sum_probs=28.1
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
+++-.++|+||+..-+|...+..+.+.+..+.+++.++..+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEe
Confidence 45567899999998888776777777776555554444433
No 487
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=89.98 E-value=0.63 Score=49.02 Aligned_cols=40 Identities=30% Similarity=0.316 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHhhcC-C-cEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 116 PTPIQAQGWPMALKG-R-DLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~~-~-~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
+.+-|.+.+..++.. + -+++++|||||||+. +..++.++.
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 355667777665543 3 478999999999976 344565553
No 488
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.89 E-value=0.16 Score=50.79 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=36.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
+++++|+||||||..+++|.+... ...++|+=|--++........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999888866431 234888889889987766665554
No 489
>PRK05748 replicative DNA helicase; Provisional
Probab=89.85 E-value=4.1 Score=41.73 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=53.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH-HhcCCCCceEEEEeCCCCCch
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-KFGASSKIKSTCIYGGVPKGP 208 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 208 (498)
|.-+++.|.||.|||..++- ++.++... .+..++|++.- .-..|+...+- ..+ . +....+..+.-...
T Consensus 203 G~livIaarpg~GKT~~al~-ia~~~a~~------~g~~v~~fSlE-ms~~~l~~R~l~~~~-~--v~~~~i~~~~l~~~ 271 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALN-IAQNVATK------TDKNVAIFSLE-MGAESLVMRMLCAEG-N--IDAQRLRTGQLTDD 271 (448)
T ss_pred CceEEEEeCCCCCchHHHHH-HHHHHHHh------CCCeEEEEeCC-CCHHHHHHHHHHHhc-C--CCHHHhhcCCCCHH
Confidence 34588899999999965443 33333211 14457776542 33344444442 222 1 11111111211111
Q ss_pred hH-------HHHhcCCcEEEc-----ChHHHHHHHhccCcccccccEEEeccchhhh
Q 010876 209 QV-------RDLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 253 (498)
Q Consensus 209 ~~-------~~~~~~~~Ivi~-----T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~ 253 (498)
.+ ..+. ...+.|. |++.+...+.+......++++||||=.+.+.
T Consensus 272 e~~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 272 DWPKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 21 1222 2345542 4445544333221111257899999999875
No 490
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=89.76 E-value=2.4 Score=40.62 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=31.3
Q ss_pred HHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcC---CCCcEEEEcCCC
Q 010876 226 RLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR---PDRQTLYWSATW 281 (498)
Q Consensus 226 ~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~ 281 (498)
.++..+..+....+.--++|+||+|..........+-.+....+ ...-++++|.-+
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 34555555444333335789999998776665555555544332 233445555544
No 491
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.55 E-value=4.3 Score=38.30 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=18.2
Q ss_pred HHHHHhhcC---CcEEEEcCCCchHHHH
Q 010876 122 QGWPMALKG---RDLIGIAETGSGKTLA 146 (498)
Q Consensus 122 ~~i~~~l~~---~~~i~~a~TGsGKT~~ 146 (498)
..++.+... +++++.+|+|+|||+.
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 334555433 5789999999999974
No 492
>PRK08760 replicative DNA helicase; Provisional
Probab=89.52 E-value=3.2 Score=42.71 Aligned_cols=111 Identities=18% Similarity=0.075 Sum_probs=53.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 210 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (498)
.-+++.|.||.|||..++-.+...... .+..|+|++.- .-..|+...+.......... .+..+.-....+
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~-------~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~--~i~~g~l~~~e~ 299 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIK-------SKKGVAVFSME-MSASQLAMRLISSNGRINAQ--RLRTGALEDEDW 299 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHh-------cCCceEEEecc-CCHHHHHHHHHHhhCCCcHH--HHhcCCCCHHHH
Confidence 347888999999997654433332222 14457777553 22345555544332221111 111121111111
Q ss_pred -------HHHhcCCcEEEc-----ChHHHHHHHhccCcccccccEEEeccchhhh
Q 010876 211 -------RDLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 253 (498)
Q Consensus 211 -------~~~~~~~~Ivi~-----T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~ 253 (498)
..+. ...+.|. |++.+...+.+... -..+++||||=.+.|.
T Consensus 300 ~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 300 ARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 1222 2345443 34555443332211 1357899999998774
No 493
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=89.48 E-value=2.5 Score=37.46 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=40.8
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHH
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ 291 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 291 (498)
.++.+++||||.-.=+|-.....+..++..++..-..++||.-.-++++.++..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 467789999999876666667788888888887677777777766667665543
No 494
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.43 E-value=3 Score=43.04 Aligned_cols=123 Identities=18% Similarity=0.233 Sum_probs=68.2
Q ss_pred cEEEEcCCC--cHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhc--CCCeEEEEeCCc
Q 010876 273 QTLYWSATW--PKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTK 348 (498)
Q Consensus 273 ~~i~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--~~~~vlIf~~s~ 348 (498)
-.+.++++. +.++.+++..++.+.. ....+.........+..+.++.-.+...+.+.... ..+.+.|.|++.
T Consensus 590 e~v~l~~syrSt~eI~efan~~l~d~~----~~~p~~rsge~p~~i~~~~ne~l~qr~~~ii~~mkk~~~etiaVi~kt~ 665 (747)
T COG3973 590 EYVGLIASYRSTAEIDEFANSLLPDRF----RIHPLTRSGEKPAVIMSVANEELVQRNPDIIPRMKKRGSETIAVICKTD 665 (747)
T ss_pred hhhhhhhhhcChHHHHHHHHHhccCCC----ccchhhcCCCCceeeeccchHHHHHhhHHHHHHHHhcCCCceEEECCcH
Confidence 345555554 5567778888776411 11222333333344444455544444444443322 334799999999
Q ss_pred ccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCC
Q 010876 349 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 415 (498)
Q Consensus 349 ~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~ 415 (498)
.+|..+.+.|++.. ++......-+.|..|.+-+.+ -...|+.+ ++||.+|+
T Consensus 666 ~d~~~~~d~lre~~----------~~r~I~k~nq~f~~~~~vipv---y~aKGlEF---D~viv~d~ 716 (747)
T COG3973 666 HDCKAVMDSLREKD----------SQRTIAKENQRFHHGSDVIPV---YDAKGLEF---DHVIVVDP 716 (747)
T ss_pred HHHHHHHHHHhhcc----------hhhHHHhhcccccCCceEEEe---eeccccee---eeEEEecc
Confidence 99999999998542 122222223345545443332 34567766 67887776
No 495
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=89.34 E-value=0.97 Score=49.86 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=33.1
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCC-cHHHHHHHHHhhcCCcEEEEcCCCchHHHH
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEP-TPIQAQGWPMALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~-~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~ 146 (498)
...|++.+..+.+...|+.+-+..+ +|-+.+-+ .+.--+.+++.+|.|+|||+.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHH
Confidence 3457777777777777776644322 22111111 122345699999999999985
No 496
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=89.27 E-value=2.4 Score=44.27 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=28.9
Q ss_pred ccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEE
Q 010876 237 NLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 277 (498)
Q Consensus 237 ~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 277 (498)
-+++.+++|+|||=.-+|.+....+...++.--++.-+|-.
T Consensus 530 lL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV 570 (604)
T COG4178 530 LLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISV 570 (604)
T ss_pred HHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEe
Confidence 36788999999999988887677776666553344444433
No 497
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=89.25 E-value=3.3 Score=41.17 Aligned_cols=24 Identities=42% Similarity=0.466 Sum_probs=19.3
Q ss_pred HhhcCCcEEEEcCCCchHHHHHHH
Q 010876 126 MALKGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 126 ~~l~~~~~i~~a~TGsGKT~~~~l 149 (498)
..-.+..+++.++||+||++.+..
T Consensus 97 ~ap~~~~vLi~GetGtGKel~A~~ 120 (403)
T COG1221 97 YAPSGLPVLIIGETGTGKELFARL 120 (403)
T ss_pred hCCCCCcEEEecCCCccHHHHHHH
Confidence 344678899999999999986544
No 498
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=89.24 E-value=0.81 Score=43.02 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=36.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
.++.+++.+++|+|||+-.+-.+...+.. +.++++++- .+...++.+.+..|+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--------ge~vlyvs~-~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--------GEPVLYVST-EESPEELLENARSFGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--------CCcEEEEEe-cCCHHHHHHHHHHcCCC
Confidence 45679999999999996533333333222 555787765 46777777777776544
No 499
>PRK14701 reverse gyrase; Provisional
Probab=89.22 E-value=1.3 Score=52.27 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=53.1
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhC------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRMD------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 397 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~~------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 397 (498)
.+.++||.+|++.-+.++++.|+.. +..+..+||+++..++..+++.+.+|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4558999999999999998888762 456788999999999999999999999999999953
No 500
>PHA00350 putative assembly protein
Probab=89.16 E-value=4.1 Score=40.54 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=13.9
Q ss_pred EEEEcCCCchHHHHHHH
Q 010876 133 LIGIAETGSGKTLAYLL 149 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l 149 (498)
.++.+..|||||+.++-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 47789999999987654
Done!