Query 010876
Match_columns 498
No_of_seqs 342 out of 3255
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 16:07:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.4E-69 4.7E-74 549.8 46.9 390 79-471 42-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 2.4E-63 8E-68 503.2 45.9 395 80-475 2-413 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 5.6E-60 1.9E-64 477.4 36.5 374 87-467 31-405 (410)
4 3eiq_A Eukaryotic initiation f 100.0 8.8E-59 3E-63 469.2 35.1 379 86-471 33-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 6.8E-58 2.3E-62 460.6 38.8 371 90-468 18-388 (400)
6 1xti_A Probable ATP-dependent 100.0 3.5E-57 1.2E-61 454.0 39.2 370 93-468 8-381 (391)
7 3i5x_A ATP-dependent RNA helic 100.0 7.7E-57 2.6E-61 472.6 36.0 365 92-457 67-461 (563)
8 1hv8_A Putative ATP-dependent 100.0 1.2E-55 4.2E-60 438.7 42.2 357 92-462 5-362 (367)
9 1fuu_A Yeast initiation factor 100.0 1.1E-57 3.6E-62 458.2 24.9 377 87-471 15-392 (394)
10 3fht_A ATP-dependent RNA helic 100.0 2.5E-55 8.4E-60 443.6 41.5 369 88-466 20-401 (412)
11 3pey_A ATP-dependent RNA helic 100.0 5.7E-55 2E-59 438.3 42.2 357 91-458 3-370 (395)
12 3sqw_A ATP-dependent RNA helic 100.0 3.9E-55 1.3E-59 460.1 37.1 367 89-456 13-409 (579)
13 3fmp_B ATP-dependent RNA helic 100.0 8.2E-56 2.8E-60 455.6 24.1 374 82-465 78-467 (479)
14 2z0m_A 337AA long hypothetical 100.0 7.2E-53 2.5E-57 413.8 39.0 336 100-459 1-336 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 3.2E-52 1.1E-56 434.4 33.8 342 95-454 23-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 1.7E-53 5.7E-58 439.9 20.7 370 87-466 113-492 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1.1E-50 3.7E-55 418.8 34.7 341 93-455 2-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 5.6E-50 1.9E-54 404.6 29.6 326 104-458 10-376 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 5E-47 1.7E-51 408.3 36.3 337 92-446 7-409 (715)
20 2zj8_A DNA helicase, putative 100.0 8.6E-48 2.9E-52 414.1 29.3 332 94-446 2-388 (720)
21 2ykg_A Probable ATP-dependent 100.0 5.4E-48 1.9E-52 415.6 25.1 343 106-453 4-524 (696)
22 4a2p_A RIG-I, retinoic acid in 100.0 1.3E-47 4.3E-52 402.4 26.3 331 112-447 4-510 (556)
23 2p6r_A Afuhel308 helicase; pro 100.0 1.6E-47 5.5E-52 410.9 27.3 332 94-447 2-390 (702)
24 3l9o_A ATP-dependent RNA helic 100.0 5.5E-47 1.9E-51 418.7 30.1 329 94-445 163-597 (1108)
25 1tf5_A Preprotein translocase 100.0 1.5E-46 5.1E-51 391.7 28.8 380 45-447 17-547 (844)
26 3tbk_A RIG-I helicase domain; 100.0 1.1E-46 3.7E-51 395.1 26.3 335 114-453 3-515 (555)
27 4a2q_A RIG-I, retinoic acid in 100.0 9.6E-46 3.3E-50 401.9 29.4 332 111-447 244-751 (797)
28 4ddu_A Reverse gyrase; topoiso 100.0 1.7E-45 5.7E-50 406.8 30.3 321 111-459 75-504 (1104)
29 2xgj_A ATP-dependent RNA helic 100.0 1.9E-44 6.4E-49 395.3 37.9 318 112-453 84-508 (1010)
30 1wp9_A ATP-dependent RNA helic 100.0 1.7E-44 5.7E-49 372.0 34.3 323 115-447 9-477 (494)
31 4a2w_A RIG-I, retinoic acid in 100.0 9E-45 3.1E-49 398.2 26.7 332 111-447 244-751 (936)
32 1gku_B Reverse gyrase, TOP-RG; 100.0 3.2E-45 1.1E-49 404.9 21.7 320 110-459 53-468 (1054)
33 4f92_B U5 small nuclear ribonu 100.0 7.2E-45 2.5E-49 414.9 25.2 400 45-454 8-482 (1724)
34 4gl2_A Interferon-induced heli 100.0 7.5E-45 2.6E-49 391.3 19.4 325 114-444 6-517 (699)
35 2fsf_A Preprotein translocase 100.0 1.1E-43 3.7E-48 369.1 24.4 321 111-447 71-585 (853)
36 1nkt_A Preprotein translocase 100.0 3.2E-42 1.1E-46 358.3 32.6 336 110-460 107-636 (922)
37 4a4z_A Antiviral helicase SKI2 100.0 2.3E-42 8E-47 378.7 33.0 306 115-443 39-490 (997)
38 1gm5_A RECG; helicase, replica 100.0 1.8E-43 6.3E-48 375.9 23.5 333 103-461 357-712 (780)
39 4f92_B U5 small nuclear ribonu 100.0 4.1E-42 1.4E-46 392.3 33.3 343 100-454 911-1317(1724)
40 2eyq_A TRCF, transcription-rep 100.0 1.4E-41 4.8E-46 377.9 36.1 323 98-445 586-922 (1151)
41 2oca_A DAR protein, ATP-depend 100.0 2.9E-42 9.8E-47 357.5 23.6 312 114-443 112-453 (510)
42 3fe2_A Probable ATP-dependent 100.0 3.1E-41 1E-45 314.9 26.9 239 67-305 3-241 (242)
43 2whx_A Serine protease/ntpase/ 100.0 5.8E-43 2E-47 365.7 12.1 324 98-467 155-503 (618)
44 2jlq_A Serine protease subunit 100.0 1.3E-41 4.6E-46 345.3 15.8 311 112-468 1-337 (451)
45 2fwr_A DNA repair protein RAD2 100.0 4.2E-41 1.4E-45 345.4 17.2 294 114-445 92-454 (472)
46 2xau_A PRE-mRNA-splicing facto 100.0 6.8E-40 2.3E-44 350.9 24.4 336 90-447 69-445 (773)
47 1yks_A Genome polyprotein [con 100.0 2.7E-42 9.2E-47 348.9 5.2 289 126-467 4-324 (440)
48 2wv9_A Flavivirin protease NS2 100.0 6.3E-41 2.2E-45 352.4 13.0 306 115-465 215-556 (673)
49 3o8b_A HCV NS3 protease/helica 100.0 3E-40 1E-44 341.9 13.2 279 115-449 217-518 (666)
50 2z83_A Helicase/nucleoside tri 100.0 3.8E-39 1.3E-43 327.8 14.9 275 122-445 13-313 (459)
51 3h1t_A Type I site-specific re 100.0 4.2E-38 1.4E-42 331.6 20.1 304 115-434 178-545 (590)
52 2v6i_A RNA helicase; membrane, 100.0 8.6E-38 2.9E-42 315.3 20.9 269 129-442 1-288 (431)
53 3iuy_A Probable ATP-dependent 100.0 5.9E-37 2E-41 283.4 24.1 215 85-300 11-227 (228)
54 1wrb_A DJVLGB; RNA helicase, D 100.0 8.6E-37 2.9E-41 286.9 22.7 226 80-305 8-243 (253)
55 3dmq_A RNA polymerase-associat 100.0 7.8E-37 2.7E-41 335.7 23.0 336 114-461 152-629 (968)
56 3bor_A Human initiation factor 100.0 4.3E-36 1.5E-40 279.0 23.8 212 85-301 22-234 (237)
57 3dkp_A Probable ATP-dependent 100.0 2.8E-36 9.7E-41 282.0 22.7 230 71-304 3-243 (245)
58 1z63_A Helicase of the SNF2/RA 100.0 3.8E-36 1.3E-40 310.8 25.8 328 114-462 36-468 (500)
59 3ber_A Probable ATP-dependent 100.0 7.9E-36 2.7E-40 278.9 23.4 207 90-301 40-247 (249)
60 2oxc_A Probable ATP-dependent 100.0 1.3E-35 4.6E-40 274.4 23.5 210 85-300 16-227 (230)
61 1vec_A ATP-dependent RNA helic 100.0 2.6E-35 8.8E-40 268.0 24.9 202 93-299 3-205 (206)
62 1q0u_A Bstdead; DEAD protein, 100.0 6E-36 2E-40 274.8 20.8 207 92-303 3-213 (219)
63 3fmo_B ATP-dependent RNA helic 100.0 2.9E-35 9.8E-40 282.4 26.3 215 80-302 76-298 (300)
64 1qde_A EIF4A, translation init 100.0 2.4E-35 8E-40 271.9 24.5 213 85-303 6-218 (224)
65 3rc3_A ATP-dependent RNA helic 100.0 7.7E-36 2.6E-40 312.7 23.8 273 125-442 150-442 (677)
66 2pl3_A Probable ATP-dependent 100.0 5.4E-35 1.9E-39 271.6 26.9 212 89-302 21-233 (236)
67 2gxq_A Heat resistant RNA depe 100.0 8.7E-35 3E-39 264.7 26.2 204 94-301 2-205 (207)
68 3ly5_A ATP-dependent RNA helic 100.0 9E-35 3.1E-39 273.9 23.1 204 93-297 52-258 (262)
69 3mwy_W Chromo domain-containin 100.0 3.7E-34 1.3E-38 310.1 30.2 397 45-461 170-698 (800)
70 3jux_A Protein translocase sub 100.0 6E-33 2.1E-37 282.7 36.5 319 112-447 73-589 (822)
71 1t6n_A Probable ATP-dependent 100.0 2.3E-34 7.9E-39 264.4 22.3 207 89-300 10-219 (220)
72 1z3i_X Similar to RAD54-like; 100.0 2.7E-33 9.1E-38 296.1 32.4 323 115-445 55-528 (644)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1E-32 3.4E-37 300.8 23.9 311 115-443 271-707 (1038)
74 2p6n_A ATP-dependent RNA helic 100.0 1.6E-30 5.6E-35 231.9 19.2 181 290-473 9-190 (191)
75 2jgn_A DBX, DDX3, ATP-dependen 100.0 3.1E-30 1.1E-34 229.2 18.5 168 307-474 15-182 (185)
76 2ipc_A Preprotein translocase 100.0 2.1E-28 7.2E-33 253.9 32.4 318 111-447 76-700 (997)
77 1c4o_A DNA nucleotide excision 100.0 3E-28 1E-32 257.2 29.5 176 270-455 379-560 (664)
78 2d7d_A Uvrabc system protein B 100.0 2.3E-27 7.9E-32 250.3 28.5 175 270-454 385-565 (661)
79 2hjv_A ATP-dependent RNA helic 100.0 1.5E-27 5.1E-32 207.8 19.1 150 308-458 6-155 (163)
80 1fuk_A Eukaryotic initiation f 100.0 4.1E-28 1.4E-32 211.8 14.4 159 311-470 3-162 (165)
81 1t5i_A C_terminal domain of A 100.0 9.1E-28 3.1E-32 210.9 15.3 160 310-470 4-164 (172)
82 2rb4_A ATP-dependent RNA helic 99.9 5.3E-27 1.8E-31 206.9 17.1 153 309-462 5-164 (175)
83 3eaq_A Heat resistant RNA depe 99.9 3.6E-26 1.2E-30 207.7 17.2 148 312-460 6-153 (212)
84 3i32_A Heat resistant RNA depe 99.9 1.4E-25 4.7E-30 213.3 16.6 147 312-459 3-149 (300)
85 3b6e_A Interferon-induced heli 99.9 4.4E-25 1.5E-29 201.7 13.8 166 112-280 30-216 (216)
86 2yjt_D ATP-dependent RNA helic 99.9 9E-27 3.1E-31 204.3 0.0 149 311-460 3-152 (170)
87 2vl7_A XPD; helicase, unknown 99.9 9.6E-23 3.3E-27 211.0 23.7 300 112-444 5-520 (540)
88 1rif_A DAR protein, DNA helica 99.9 2.4E-24 8.3E-29 205.1 9.8 156 114-286 112-267 (282)
89 3llm_A ATP-dependent RNA helic 99.9 3E-22 1E-26 185.2 15.8 181 103-297 49-232 (235)
90 3crv_A XPD/RAD3 related DNA he 99.9 1.8E-20 6.1E-25 194.7 30.5 309 115-445 3-531 (551)
91 4a15_A XPD helicase, ATP-depen 99.8 9.8E-19 3.4E-23 183.0 24.2 317 114-444 2-583 (620)
92 2fz4_A DNA repair protein RAD2 99.8 9.9E-20 3.4E-24 168.1 14.4 139 114-284 92-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 5.7E-20 2E-24 172.6 12.8 127 319-445 92-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 2.8E-09 9.6E-14 111.4 9.8 146 117-280 151-298 (608)
95 2gk6_A Regulator of nonsense t 98.7 1.6E-05 5.4E-10 83.4 30.2 70 113-189 178-247 (624)
96 4b3f_X DNA-binding protein smu 98.7 8.8E-07 3E-11 93.5 19.3 68 115-190 189-257 (646)
97 2wjy_A Regulator of nonsense t 98.6 9.9E-06 3.4E-10 86.9 24.8 71 113-190 354-424 (800)
98 2xzl_A ATP-dependent helicase 98.6 1.3E-05 4.5E-10 86.0 25.1 71 113-190 358-428 (802)
99 3upu_A ATP-dependent DNA helic 98.5 3.9E-06 1.3E-10 84.8 19.2 132 110-278 20-162 (459)
100 3e1s_A Exodeoxyribonuclease V, 98.4 1.4E-06 4.8E-11 90.1 12.7 126 114-278 188-313 (574)
101 3lfu_A DNA helicase II; SF1 he 98.3 7.2E-05 2.5E-09 79.1 22.5 71 114-190 8-78 (647)
102 3hgt_A HDA1 complex subunit 3; 98.2 1.5E-05 5.3E-10 74.8 12.0 123 319-446 105-238 (328)
103 2o0j_A Terminase, DNA packagin 97.5 0.0009 3.1E-08 65.1 12.9 70 115-190 163-232 (385)
104 3vkw_A Replicase large subunit 97.4 0.00048 1.6E-08 67.8 9.6 106 133-280 164-269 (446)
105 3cpe_A Terminase, DNA packagin 97.2 0.006 2.1E-07 63.4 15.4 72 115-192 163-234 (592)
106 3ec2_A DNA replication protein 97.2 0.0017 5.9E-08 56.1 9.3 32 117-148 16-56 (180)
107 2orw_A Thymidine kinase; TMTK, 97.1 0.0017 5.7E-08 56.5 8.2 39 130-176 3-41 (184)
108 3te6_A Regulatory protein SIR3 97.0 0.0076 2.6E-07 56.9 13.1 27 130-157 45-71 (318)
109 1xx6_A Thymidine kinase; NESG, 97.0 0.0018 6.3E-08 56.4 8.1 39 130-176 8-46 (191)
110 2j9r_A Thymidine kinase; TK1, 96.9 0.0013 4.3E-08 58.1 6.3 37 132-176 30-66 (214)
111 2b8t_A Thymidine kinase; deoxy 96.9 0.00095 3.3E-08 59.8 5.4 91 130-253 12-102 (223)
112 1pjr_A PCRA; DNA repair, DNA r 96.7 0.006 2.1E-07 65.0 10.7 110 114-251 10-121 (724)
113 2orv_A Thymidine kinase; TP4A 96.6 0.005 1.7E-07 54.9 7.3 39 130-176 19-57 (234)
114 1a5t_A Delta prime, HOLB; zinc 96.4 0.011 3.9E-07 56.5 9.4 41 116-157 3-50 (334)
115 2kjq_A DNAA-related protein; s 96.3 0.0016 5.4E-08 54.5 2.7 18 129-146 35-52 (149)
116 1l8q_A Chromosomal replication 96.3 0.016 5.5E-07 55.1 10.1 26 130-156 37-62 (324)
117 2zpa_A Uncharacterized protein 96.3 0.0065 2.2E-07 62.9 7.6 112 115-281 175-288 (671)
118 2v1u_A Cell division control p 96.3 0.035 1.2E-06 53.9 12.4 29 240-268 130-159 (387)
119 3e2i_A Thymidine kinase; Zn-bi 96.2 0.0059 2E-07 53.7 5.7 39 130-176 28-66 (219)
120 1uaa_A REP helicase, protein ( 96.1 0.0074 2.5E-07 63.8 7.1 71 115-191 2-72 (673)
121 1g5t_A COB(I)alamin adenosyltr 96.1 0.039 1.3E-06 47.9 10.3 140 131-289 29-171 (196)
122 1d2n_A N-ethylmaleimide-sensit 96.1 0.047 1.6E-06 50.4 11.5 19 131-149 65-83 (272)
123 1w4r_A Thymidine kinase; type 96.0 0.0094 3.2E-07 51.7 5.9 38 130-175 20-57 (195)
124 3kl4_A SRP54, signal recogniti 95.9 0.018 6.1E-07 56.8 8.3 55 239-293 178-235 (433)
125 2p65_A Hypothetical protein PF 95.9 0.045 1.5E-06 46.8 10.1 19 130-148 43-61 (187)
126 1gm5_A RECG; helicase, replica 95.9 0.023 7.9E-07 60.6 9.6 87 328-414 407-498 (780)
127 3h4m_A Proteasome-activating n 95.9 0.033 1.1E-06 51.8 9.6 55 91-147 12-68 (285)
128 2w58_A DNAI, primosome compone 95.9 0.038 1.3E-06 48.4 9.5 25 131-156 55-79 (202)
129 1jbk_A CLPB protein; beta barr 95.8 0.15 5.2E-06 43.5 13.2 24 131-155 44-67 (195)
130 2qby_B CDC6 homolog 3, cell di 95.7 0.055 1.9E-06 52.6 10.9 38 243-281 136-174 (384)
131 2z4s_A Chromosomal replication 95.7 0.059 2E-06 53.6 10.9 44 240-283 194-239 (440)
132 2chg_A Replication factor C sm 95.6 0.063 2.1E-06 47.3 10.1 41 239-280 101-141 (226)
133 3n70_A Transport activator; si 95.6 0.066 2.3E-06 44.1 9.5 40 242-282 78-117 (145)
134 3bos_A Putative DNA replicatio 95.5 0.027 9.2E-07 50.6 7.3 20 129-148 51-70 (242)
135 2qgz_A Helicase loader, putati 95.5 0.042 1.4E-06 51.8 8.6 26 130-156 152-177 (308)
136 1fnn_A CDC6P, cell division co 95.4 0.029 1E-06 54.6 7.8 16 132-147 46-61 (389)
137 3u4q_A ATP-dependent helicase/ 95.4 0.03 1E-06 63.3 8.5 72 114-189 9-80 (1232)
138 3u61_B DNA polymerase accessor 95.4 0.042 1.4E-06 52.1 8.5 41 239-280 104-145 (324)
139 3syl_A Protein CBBX; photosynt 95.1 0.034 1.2E-06 52.3 6.9 19 131-149 68-86 (309)
140 4b4t_M 26S protease regulatory 95.0 0.11 3.7E-06 51.2 10.1 56 89-147 174-232 (434)
141 4b4t_J 26S protease regulatory 95.0 0.17 5.8E-06 49.2 11.2 54 91-147 143-199 (405)
142 3dm5_A SRP54, signal recogniti 94.9 0.058 2E-06 53.2 7.9 131 132-293 102-236 (443)
143 2qby_A CDC6 homolog 1, cell di 94.9 0.07 2.4E-06 51.7 8.5 19 130-148 45-63 (386)
144 2gno_A DNA polymerase III, gam 94.9 0.081 2.8E-06 49.7 8.6 40 238-278 80-119 (305)
145 3cf0_A Transitional endoplasmi 94.4 0.094 3.2E-06 49.2 7.9 57 91-148 10-67 (301)
146 3eie_A Vacuolar protein sortin 94.4 0.22 7.6E-06 47.1 10.6 52 91-148 13-69 (322)
147 2dr3_A UPF0273 protein PH0284; 94.3 0.14 4.8E-06 46.1 8.7 53 129-190 22-74 (247)
148 3oiy_A Reverse gyrase helicase 94.2 0.14 4.8E-06 50.3 8.9 83 332-414 58-147 (414)
149 1jr3_A DNA polymerase III subu 94.1 0.23 7.9E-06 47.9 10.2 39 239-278 118-156 (373)
150 1njg_A DNA polymerase III subu 94.1 0.51 1.7E-05 41.8 11.9 17 132-148 47-63 (250)
151 2w0m_A SSO2452; RECA, SSPF, un 94.1 0.22 7.4E-06 44.3 9.3 21 129-149 22-42 (235)
152 1sxj_E Activator 1 40 kDa subu 94.0 0.21 7E-06 47.9 9.5 42 239-281 133-174 (354)
153 4b4t_H 26S protease regulatory 93.9 0.35 1.2E-05 47.7 10.9 55 90-147 203-260 (467)
154 1iqp_A RFCS; clamp loader, ext 93.8 0.15 5.1E-06 48.1 8.1 40 239-279 109-148 (327)
155 4b4t_K 26S protease regulatory 93.7 0.35 1.2E-05 47.5 10.4 55 90-147 166-223 (428)
156 3uk6_A RUVB-like 2; hexameric 93.5 0.33 1.1E-05 46.7 10.1 20 130-149 70-89 (368)
157 3pfi_A Holliday junction ATP-d 93.5 0.14 4.9E-06 48.7 7.4 18 131-148 56-73 (338)
158 1sxj_D Activator 1 41 kDa subu 93.5 0.29 1E-05 46.7 9.6 39 240-279 133-171 (353)
159 1sxj_C Activator 1 40 kDa subu 93.3 0.3 1E-05 46.6 9.3 39 239-278 109-147 (340)
160 2eyq_A TRCF, transcription-rep 93.1 0.28 9.6E-06 54.9 9.9 80 333-412 647-731 (1151)
161 4b4t_I 26S protease regulatory 93.1 0.39 1.3E-05 46.9 9.6 18 130-147 216-233 (437)
162 3pvs_A Replication-associated 93.1 0.13 4.4E-06 51.2 6.4 19 131-149 51-69 (447)
163 2qz4_A Paraplegin; AAA+, SPG7, 92.9 0.41 1.4E-05 43.5 9.1 19 130-148 39-57 (262)
164 2qp9_X Vacuolar protein sortin 92.8 0.25 8.7E-06 47.4 7.8 19 130-148 84-102 (355)
165 1w5s_A Origin recognition comp 92.7 0.3 1E-05 47.8 8.5 16 132-147 52-69 (412)
166 3vfd_A Spastin; ATPase, microt 92.7 0.41 1.4E-05 46.6 9.3 19 130-148 148-166 (389)
167 1sxj_B Activator 1 37 kDa subu 92.3 0.23 8E-06 46.6 6.9 40 240-280 107-146 (323)
168 2r6a_A DNAB helicase, replicat 92.3 0.5 1.7E-05 47.1 9.5 39 129-174 202-240 (454)
169 2px0_A Flagellar biosynthesis 92.0 0.91 3.1E-05 42.3 10.4 20 130-149 105-124 (296)
170 1t6n_A Probable ATP-dependent 92.0 0.39 1.3E-05 42.3 7.6 73 339-414 83-166 (220)
171 2l8b_A Protein TRAI, DNA helic 91.9 0.21 7.1E-06 42.4 5.1 121 116-280 35-158 (189)
172 1sxj_A Activator 1 95 kDa subu 91.9 0.39 1.3E-05 48.7 8.3 40 240-281 148-189 (516)
173 3d8b_A Fidgetin-like protein 1 91.9 0.49 1.7E-05 45.4 8.7 19 130-148 117-135 (357)
174 2q6t_A DNAB replication FORK h 91.8 0.76 2.6E-05 45.6 10.2 38 130-174 200-237 (444)
175 1hqc_A RUVB; extended AAA-ATPa 91.8 0.26 8.8E-06 46.5 6.5 19 130-148 38-56 (324)
176 1nlf_A Regulatory protein REPA 91.6 0.91 3.1E-05 41.7 9.9 23 127-149 27-49 (279)
177 3cmu_A Protein RECA, recombina 91.3 0.26 9E-06 57.4 6.9 39 130-176 1427-1465(2050)
178 4ddu_A Reverse gyrase; topoiso 91.2 0.48 1.7E-05 52.7 8.7 83 333-415 116-205 (1104)
179 3hu3_A Transitional endoplasmi 91.1 0.62 2.1E-05 46.8 8.7 19 130-148 238-256 (489)
180 2ehv_A Hypothetical protein PH 91.0 0.34 1.2E-05 43.6 6.2 42 239-280 134-181 (251)
181 2fna_A Conserved hypothetical 91.0 7 0.00024 36.7 15.9 52 224-279 124-178 (357)
182 3hjh_A Transcription-repair-co 90.9 0.76 2.6E-05 45.9 9.0 65 338-414 382-446 (483)
183 1n0w_A DNA repair protein RAD5 90.7 0.5 1.7E-05 42.3 7.0 21 129-149 23-43 (243)
184 1ls1_A Signal recognition part 90.6 2 7E-05 39.8 11.3 53 239-291 179-232 (295)
185 3ber_A Probable ATP-dependent 90.6 1.4 4.6E-05 39.8 9.9 73 338-414 111-194 (249)
186 1xp8_A RECA protein, recombina 90.5 0.41 1.4E-05 46.1 6.5 39 129-175 73-111 (366)
187 1oyw_A RECQ helicase, ATP-depe 90.2 0.95 3.3E-05 45.9 9.3 60 337-396 64-123 (523)
188 2zr9_A Protein RECA, recombina 90.2 0.2 6.7E-06 48.0 3.9 39 129-175 60-98 (349)
189 2chq_A Replication factor C sm 89.7 0.55 1.9E-05 43.9 6.6 17 132-148 40-56 (319)
190 2v1x_A ATP-dependent DNA helic 89.6 0.85 2.9E-05 47.1 8.4 60 337-396 83-144 (591)
191 2p6n_A ATP-dependent RNA helic 89.5 2.6 8.9E-05 36.2 10.4 73 166-248 54-130 (191)
192 2z43_A DNA repair and recombin 89.0 0.66 2.2E-05 43.9 6.6 65 123-189 95-165 (324)
193 1u94_A RECA protein, recombina 88.9 0.29 1E-05 46.9 4.0 38 129-174 62-99 (356)
194 3cf2_A TER ATPase, transitiona 88.8 0.41 1.4E-05 51.0 5.4 56 91-147 472-528 (806)
195 3hr8_A Protein RECA; alpha and 88.6 0.35 1.2E-05 46.3 4.3 39 130-176 61-99 (356)
196 3bgw_A DNAB-like replicative h 88.3 0.89 3E-05 45.0 7.2 39 129-175 196-234 (444)
197 3co5_A Putative two-component 88.2 0.36 1.2E-05 39.5 3.6 20 127-146 24-43 (143)
198 2ce7_A Cell division protein F 88.0 1.5 5E-05 43.8 8.6 17 131-147 50-66 (476)
199 1qvr_A CLPB protein; coiled co 87.8 1.6 5.6E-05 47.2 9.5 24 131-155 192-215 (854)
200 4a1f_A DNAB helicase, replicat 87.7 0.59 2E-05 44.4 5.2 38 129-174 45-82 (338)
201 3m6a_A ATP-dependent protease 87.5 0.62 2.1E-05 47.5 5.6 20 129-148 107-126 (543)
202 2oxc_A Probable ATP-dependent 87.2 1.2 4E-05 39.6 6.8 70 338-412 92-172 (230)
203 1r6b_X CLPA protein; AAA+, N-t 87.2 2.2 7.5E-05 45.5 10.0 19 130-148 207-225 (758)
204 2hjv_A ATP-dependent RNA helic 87.0 1.9 6.6E-05 35.8 7.7 74 166-249 35-112 (163)
205 3fe2_A Probable ATP-dependent 86.5 3.9 0.00013 36.4 9.9 73 338-414 102-184 (242)
206 2rb4_A ATP-dependent RNA helic 86.2 3.3 0.00011 34.8 8.8 73 166-248 34-110 (175)
207 1xti_A Probable ATP-dependent 86.1 2.4 8E-05 40.8 8.8 72 338-412 76-158 (391)
208 1v5w_A DMC1, meiotic recombina 86.1 0.97 3.3E-05 43.1 5.8 65 123-189 110-180 (343)
209 3io5_A Recombination and repai 86.0 1 3.4E-05 42.2 5.6 90 132-253 30-124 (333)
210 2gxq_A Heat resistant RNA depe 85.7 4.2 0.00014 34.9 9.5 73 338-414 72-152 (207)
211 3cmu_A Protein RECA, recombina 85.6 1.4 4.8E-05 51.5 7.7 48 127-183 1078-1125(2050)
212 3iuy_A Probable ATP-dependent 85.4 3 0.0001 36.7 8.6 74 337-414 93-175 (228)
213 1vec_A ATP-dependent RNA helic 85.2 2.6 8.9E-05 36.3 7.9 71 338-412 71-152 (206)
214 2pl3_A Probable ATP-dependent 85.1 3.1 0.00011 36.8 8.5 73 337-414 96-179 (236)
215 2eyu_A Twitching motility prot 85.1 0.62 2.1E-05 42.5 3.8 20 127-146 22-41 (261)
216 3cf2_A TER ATPase, transitiona 84.9 1.1 3.6E-05 47.8 5.9 16 131-146 239-254 (806)
217 4b4t_L 26S protease subunit RP 84.8 0.82 2.8E-05 45.0 4.7 55 90-147 175-232 (437)
218 3e70_C DPA, signal recognition 84.6 3.2 0.00011 39.1 8.6 54 240-293 211-265 (328)
219 3jvv_A Twitching mobility prot 84.2 1.2 4.2E-05 42.6 5.6 18 129-146 122-139 (356)
220 3pxi_A Negative regulator of g 84.1 3.9 0.00013 43.5 10.1 105 121-278 504-627 (758)
221 1fuk_A Eukaryotic initiation f 84.0 2.7 9.3E-05 34.9 7.1 74 166-249 30-107 (165)
222 3bor_A Human initiation factor 83.9 3 0.0001 37.1 7.8 73 338-413 98-180 (237)
223 2i1q_A DNA repair and recombin 83.7 1.1 3.9E-05 42.1 5.1 68 123-190 86-167 (322)
224 3eaq_A Heat resistant RNA depe 83.3 2.9 0.0001 36.5 7.3 73 166-248 31-107 (212)
225 2j37_W Signal recognition part 82.7 4.9 0.00017 40.3 9.4 18 132-149 103-120 (504)
226 1t5i_A C_terminal domain of A 82.4 7.7 0.00026 32.4 9.4 75 166-250 31-109 (172)
227 2jgn_A DBX, DDX3, ATP-dependen 82.4 3.4 0.00012 35.2 7.2 72 166-247 46-121 (185)
228 3gk5_A Uncharacterized rhodane 82.2 1.4 4.9E-05 33.8 4.3 46 328-373 45-90 (108)
229 3u4q_B ATP-dependent helicase/ 82.1 2.7 9.2E-05 47.2 8.1 89 133-251 4-92 (1166)
230 1p9r_A General secretion pathw 82.1 2.4 8.2E-05 41.5 6.8 27 120-146 155-183 (418)
231 2ffh_A Protein (FFH); SRP54, s 82.0 8.5 0.00029 37.6 10.7 18 132-149 100-117 (425)
232 1e9r_A Conjugal transfer prote 81.2 1.5 5E-05 43.3 5.0 44 129-180 52-95 (437)
233 1wrb_A DJVLGB; RNA helicase, D 81.1 14 0.00049 32.7 11.4 71 339-413 101-181 (253)
234 3ly5_A ATP-dependent RNA helic 81.1 8.8 0.0003 34.6 10.0 74 337-414 125-209 (262)
235 1wp9_A ATP-dependent RNA helic 80.6 4.5 0.00015 39.8 8.5 71 337-412 51-131 (494)
236 1pzn_A RAD51, DNA repair and r 80.3 2.7 9.4E-05 40.0 6.4 20 130-149 131-150 (349)
237 3b85_A Phosphate starvation-in 80.0 1.7 5.8E-05 38.0 4.5 32 116-147 8-39 (208)
238 3g5j_A Putative ATP/GTP bindin 80.0 2.4 8.4E-05 33.6 5.2 47 327-373 77-125 (134)
239 1gku_B Reverse gyrase, TOP-RG; 79.9 3.8 0.00013 45.4 8.2 76 337-414 98-183 (1054)
240 2i4i_A ATP-dependent RNA helic 79.2 7.3 0.00025 37.6 9.3 72 165-246 275-350 (417)
241 3flh_A Uncharacterized protein 79.1 3.5 0.00012 32.4 5.7 47 327-373 60-108 (124)
242 2yhs_A FTSY, cell division pro 78.5 8.1 0.00028 38.5 9.2 55 239-293 374-435 (503)
243 1wv9_A Rhodanese homolog TT165 77.9 2.9 9.8E-05 31.0 4.6 40 333-373 49-88 (94)
244 1tf7_A KAIC; homohexamer, hexa 77.8 11 0.00037 38.1 10.3 52 128-188 279-330 (525)
245 3cmw_A Protein RECA, recombina 77.8 1.8 6E-05 50.0 4.7 90 130-254 1431-1523(1706)
246 2zts_A Putative uncharacterize 77.4 1.3 4.6E-05 39.5 3.1 52 130-189 30-81 (251)
247 2oap_1 GSPE-2, type II secreti 77.1 2.1 7E-05 43.2 4.6 31 116-146 245-276 (511)
248 3i32_A Heat resistant RNA depe 77.0 5.2 0.00018 37.1 7.0 74 166-249 28-105 (300)
249 1qde_A EIF4A, translation init 76.8 2.7 9.1E-05 36.9 4.9 71 338-413 82-162 (224)
250 3i5x_A ATP-dependent RNA helic 76.7 19 0.00064 36.5 11.9 77 166-249 339-419 (563)
251 3hws_A ATP-dependent CLP prote 76.6 4.5 0.00015 38.6 6.8 21 129-149 50-70 (363)
252 3vaa_A Shikimate kinase, SK; s 76.5 1.6 5.4E-05 37.7 3.2 21 129-149 24-44 (199)
253 1kgd_A CASK, peripheral plasma 76.5 1.6 5.4E-05 37.0 3.1 18 129-146 4-21 (180)
254 1lv7_A FTSH; alpha/beta domain 76.4 4.7 0.00016 36.2 6.5 18 130-147 45-62 (257)
255 4ag6_A VIRB4 ATPase, type IV s 76.3 2.8 9.4E-05 40.6 5.2 41 129-177 34-74 (392)
256 1qhx_A CPT, protein (chloramph 75.9 1.3 4.5E-05 37.3 2.4 18 130-147 3-20 (178)
257 3bh0_A DNAB-like replicative h 75.9 2.9 9.9E-05 39.2 5.1 51 128-187 66-116 (315)
258 1j8m_F SRP54, signal recogniti 75.7 6.4 0.00022 36.4 7.3 18 132-149 100-117 (297)
259 2bjv_A PSP operon transcriptio 75.6 2.3 7.7E-05 38.6 4.1 20 128-147 27-46 (265)
260 2l82_A Designed protein OR32; 75.5 23 0.00079 26.5 10.0 49 341-389 5-53 (162)
261 1q0u_A Bstdead; DEAD protein, 75.2 1.6 5.4E-05 38.3 2.9 72 338-413 72-157 (219)
262 1yks_A Genome polyprotein [con 75.1 4.1 0.00014 40.2 6.2 68 166-245 177-245 (440)
263 3ipz_A Monothiol glutaredoxin- 74.7 12 0.0004 28.6 7.5 64 329-392 8-77 (109)
264 2r8r_A Sensor protein; KDPD, P 74.6 3.2 0.00011 36.6 4.6 21 132-152 8-28 (228)
265 3trf_A Shikimate kinase, SK; a 74.5 1.9 6.5E-05 36.5 3.2 20 130-149 5-24 (185)
266 3nwn_A Kinesin-like protein KI 74.4 2.2 7.7E-05 40.7 3.8 24 123-146 96-121 (359)
267 3iij_A Coilin-interacting nucl 74.3 1.8 6E-05 36.6 2.9 22 128-149 9-30 (180)
268 1gmx_A GLPE protein; transfera 74.3 3.5 0.00012 31.4 4.3 45 329-373 49-94 (108)
269 1tue_A Replication protein E1; 74.3 4.3 0.00015 35.3 5.2 67 64-147 5-75 (212)
270 2r44_A Uncharacterized protein 74.3 2.4 8.2E-05 39.9 4.1 22 126-147 42-63 (331)
271 2x8a_A Nuclear valosin-contain 74.1 1 3.4E-05 41.4 1.3 53 91-146 5-60 (274)
272 3a8t_A Adenylate isopentenyltr 74.0 1.8 6E-05 40.9 2.9 19 131-149 41-59 (339)
273 3lw7_A Adenylate kinase relate 73.5 1.5 5.1E-05 36.5 2.2 17 132-148 3-19 (179)
274 3nbx_X ATPase RAVA; AAA+ ATPas 73.5 1.9 6.7E-05 43.2 3.3 26 121-146 32-57 (500)
275 2qor_A Guanylate kinase; phosp 73.4 1.6 5.5E-05 37.9 2.4 21 127-147 9-29 (204)
276 3sqw_A ATP-dependent RNA helic 73.3 26 0.00089 35.7 11.9 78 166-250 288-369 (579)
277 1u0j_A DNA replication protein 73.2 7.4 0.00025 35.3 6.8 44 102-148 73-122 (267)
278 1ofh_A ATP-dependent HSL prote 72.9 7.8 0.00027 35.6 7.3 19 130-148 50-68 (310)
279 1lvg_A Guanylate kinase, GMP k 72.9 2.2 7.5E-05 36.8 3.2 18 129-146 3-20 (198)
280 2gza_A Type IV secretion syste 72.8 2.4 8.1E-05 40.7 3.6 20 127-146 172-191 (361)
281 1ixz_A ATP-dependent metallopr 72.7 1.7 5.7E-05 39.2 2.4 54 91-147 11-66 (254)
282 4a2p_A RIG-I, retinoic acid in 72.7 4.6 0.00016 40.9 6.1 72 338-413 55-137 (556)
283 3tau_A Guanylate kinase, GMP k 72.6 2.3 7.7E-05 37.1 3.2 18 129-146 7-24 (208)
284 1xwi_A SKD1 protein; VPS4B, AA 72.6 6.5 0.00022 36.8 6.6 51 91-147 7-62 (322)
285 1bg2_A Kinesin; motor protein, 72.3 2.8 9.5E-05 39.4 3.9 24 123-146 69-94 (325)
286 3t0q_A AGR253WP; kinesin, alph 72.0 2.8 9.6E-05 39.9 3.9 26 122-147 76-103 (349)
287 1zp6_A Hypothetical protein AT 72.0 1.7 6E-05 36.9 2.3 19 128-146 7-25 (191)
288 2qmh_A HPR kinase/phosphorylas 71.9 1.9 6.5E-05 37.3 2.4 17 130-146 34-50 (205)
289 3zyw_A Glutaredoxin-3; metal b 71.8 12 0.00042 28.6 7.0 65 329-393 6-76 (111)
290 2jtq_A Phage shock protein E; 71.7 8.4 0.00029 27.6 5.7 43 330-373 31-76 (85)
291 2cvh_A DNA repair and recombin 71.7 3.7 0.00013 35.6 4.5 21 129-149 19-39 (220)
292 1f9v_A Kinesin-like protein KA 71.7 2.8 9.7E-05 39.8 3.8 26 122-147 75-102 (347)
293 3dc4_A Kinesin-like protein NO 71.5 2.6 8.9E-05 39.9 3.5 23 124-146 87-111 (344)
294 3exa_A TRNA delta(2)-isopenten 71.4 2 7E-05 40.0 2.7 17 132-148 5-21 (322)
295 2j41_A Guanylate kinase; GMP, 71.4 2.4 8.4E-05 36.5 3.1 20 128-147 4-23 (207)
296 4f4c_A Multidrug resistance pr 71.3 1.5 5.1E-05 49.9 2.1 41 238-278 1233-1273(1321)
297 1v8k_A Kinesin-like protein KI 71.3 2.9 9.9E-05 40.6 3.8 23 124-146 147-171 (410)
298 1kag_A SKI, shikimate kinase I 71.2 2.8 9.6E-05 34.9 3.4 18 130-147 4-21 (173)
299 3fmo_B ATP-dependent RNA helic 71.1 8.3 0.00029 35.6 6.9 68 340-414 164-243 (300)
300 2ze6_A Isopentenyl transferase 71.1 2.3 7.8E-05 38.4 2.9 17 132-148 3-19 (253)
301 1kht_A Adenylate kinase; phosp 70.9 2 6.8E-05 36.5 2.4 20 130-149 3-22 (192)
302 3iwh_A Rhodanese-like domain p 70.9 2.8 9.4E-05 31.9 2.9 40 333-372 51-90 (103)
303 3foz_A TRNA delta(2)-isopenten 70.7 2.3 8E-05 39.6 2.9 17 132-148 12-28 (316)
304 1fuu_A Yeast initiation factor 70.7 11 0.00039 35.8 8.2 71 337-412 88-168 (394)
305 4etp_A Kinesin-like protein KA 70.7 3.2 0.00011 40.3 4.0 25 123-147 132-158 (403)
306 2h58_A Kinesin-like protein KI 70.6 3.2 0.00011 39.1 3.9 25 122-146 71-97 (330)
307 3b6u_A Kinesin-like protein KI 70.6 3.1 0.00011 39.9 3.8 23 124-146 94-118 (372)
308 3tr0_A Guanylate kinase, GMP k 70.5 2.6 8.9E-05 36.3 3.1 19 129-147 6-24 (205)
309 2vvg_A Kinesin-2; motor protei 70.5 3.2 0.00011 39.4 3.9 23 124-146 82-106 (350)
310 2nr8_A Kinesin-like protein KI 70.4 3.2 0.00011 39.6 3.8 24 123-146 95-120 (358)
311 1t5c_A CENP-E protein, centrom 70.4 3.2 0.00011 39.5 3.8 24 123-146 69-94 (349)
312 1y63_A LMAJ004144AAA protein; 70.4 2.8 9.5E-05 35.6 3.2 20 129-148 9-28 (184)
313 3eme_A Rhodanese-like domain p 70.3 2.9 9.8E-05 31.6 2.9 38 335-372 53-90 (103)
314 3foj_A Uncharacterized protein 70.2 2.8 9.5E-05 31.5 2.8 38 335-372 53-90 (100)
315 2zfi_A Kinesin-like protein KI 70.0 3.3 0.00011 39.6 3.9 24 123-146 81-106 (366)
316 1s2m_A Putative ATP-dependent 70.0 19 0.00066 34.3 9.6 73 338-414 89-171 (400)
317 2y65_A Kinesin, kinesin heavy 70.0 3.3 0.00011 39.6 3.9 23 124-146 77-101 (365)
318 3kb2_A SPBC2 prophage-derived 69.9 2.1 7E-05 35.6 2.2 18 132-149 3-20 (173)
319 1goj_A Kinesin, kinesin heavy 69.9 3.3 0.00011 39.4 3.9 23 124-146 73-97 (355)
320 4a14_A Kinesin, kinesin-like p 69.8 3.4 0.00012 39.2 3.9 23 124-146 76-100 (344)
321 3fht_A ATP-dependent RNA helic 69.8 11 0.00037 36.2 7.8 73 166-248 266-342 (412)
322 3lre_A Kinesin-like protein KI 69.7 3.3 0.00011 39.4 3.8 23 124-146 98-122 (355)
323 2yan_A Glutaredoxin-3; oxidore 69.7 22 0.00075 26.6 8.0 61 332-392 10-76 (105)
324 3ney_A 55 kDa erythrocyte memb 69.6 2.9 0.0001 36.1 3.1 19 128-146 17-35 (197)
325 3gbj_A KIF13B protein; kinesin 69.5 3.4 0.00011 39.4 3.8 24 123-146 84-109 (354)
326 1x88_A Kinesin-like protein KI 69.5 3.2 0.00011 39.7 3.6 24 123-146 80-105 (359)
327 1ojl_A Transcriptional regulat 69.3 3.2 0.00011 38.6 3.6 19 129-147 24-42 (304)
328 2pt7_A CAG-ALFA; ATPase, prote 69.1 2.3 7.9E-05 40.2 2.6 20 127-146 168-187 (330)
329 1ly1_A Polynucleotide kinase; 69.1 2.2 7.5E-05 35.8 2.2 16 132-147 4-19 (181)
330 1iy2_A ATP-dependent metallopr 69.0 2.2 7.7E-05 39.0 2.4 53 92-147 36-90 (278)
331 3dkp_A Probable ATP-dependent 68.9 6.9 0.00023 34.7 5.7 74 338-414 98-183 (245)
332 2heh_A KIF2C protein; kinesin, 68.5 3.5 0.00012 39.7 3.7 24 124-147 127-152 (387)
333 3b9p_A CG5977-PA, isoform A; A 68.4 2.9 9.8E-05 38.6 3.1 19 130-148 54-72 (297)
334 3nwj_A ATSK2; P loop, shikimat 68.3 3.5 0.00012 37.1 3.5 22 128-149 46-67 (250)
335 3a00_A Guanylate kinase, GMP k 68.1 3.4 0.00012 35.1 3.3 16 131-146 2-17 (186)
336 2wbe_C Bipolar kinesin KRP-130 68.0 3.4 0.00012 39.6 3.5 23 124-146 93-117 (373)
337 1um8_A ATP-dependent CLP prote 68.0 11 0.00037 36.1 7.2 19 130-148 72-90 (376)
338 2d7d_A Uvrabc system protein B 67.9 24 0.00083 36.6 10.3 77 166-252 445-525 (661)
339 3pey_A ATP-dependent RNA helic 67.8 17 0.00057 34.6 8.6 76 166-251 243-322 (395)
340 3cob_A Kinesin heavy chain-lik 67.6 3.3 0.00011 39.7 3.3 24 123-146 71-96 (369)
341 3cm0_A Adenylate kinase; ATP-b 67.4 2.4 8.3E-05 35.8 2.2 20 130-149 4-23 (186)
342 4gp7_A Metallophosphoesterase; 67.3 2.3 7.8E-05 35.7 2.0 18 129-146 8-25 (171)
343 1cr0_A DNA primase/helicase; R 67.2 5.5 0.00019 36.7 4.8 23 127-149 32-54 (296)
344 3u06_A Protein claret segregat 67.1 3.6 0.00012 40.0 3.5 25 122-146 129-155 (412)
345 3crm_A TRNA delta(2)-isopenten 67.1 3 0.0001 39.1 2.9 18 132-149 7-24 (323)
346 1z6g_A Guanylate kinase; struc 67.1 3.8 0.00013 35.9 3.4 20 127-146 20-39 (218)
347 2owm_A Nckin3-434, related to 66.8 4.1 0.00014 40.1 3.9 23 124-146 129-153 (443)
348 1ex7_A Guanylate kinase; subst 66.7 3 0.0001 35.6 2.6 16 131-146 2-17 (186)
349 1knq_A Gluconate kinase; ALFA/ 66.7 2.4 8.2E-05 35.5 2.0 19 130-148 8-26 (175)
350 2rep_A Kinesin-like protein KI 66.7 4.1 0.00014 39.1 3.8 24 123-146 107-132 (376)
351 4eun_A Thermoresistant glucoki 66.5 3.7 0.00013 35.3 3.2 20 129-148 28-47 (200)
352 3gx8_A Monothiol glutaredoxin- 66.4 31 0.0011 26.7 8.4 54 329-382 6-68 (121)
353 3lda_A DNA repair protein RAD5 65.9 14 0.00048 35.7 7.5 19 130-148 178-196 (400)
354 3bfn_A Kinesin-like protein KI 65.8 3.4 0.00012 39.7 3.1 21 126-146 93-115 (388)
355 4akg_A Glutathione S-transfera 65.7 7 0.00024 47.4 6.2 49 100-149 890-942 (2695)
356 3t15_A Ribulose bisphosphate c 65.7 3.3 0.00011 38.3 2.8 18 131-148 37-54 (293)
357 1znw_A Guanylate kinase, GMP k 65.4 4 0.00014 35.3 3.3 21 126-146 16-36 (207)
358 1wik_A Thioredoxin-like protei 65.3 40 0.0014 25.3 8.7 48 337-384 13-66 (109)
359 1zuh_A Shikimate kinase; alpha 65.1 3.9 0.00013 33.9 3.0 19 131-149 8-26 (168)
360 1sky_E F1-ATPase, F1-ATP synth 64.9 14 0.00049 36.4 7.3 23 127-149 148-170 (473)
361 2ewv_A Twitching motility prot 64.7 3.1 0.00011 40.0 2.6 19 128-146 134-152 (372)
362 2v54_A DTMP kinase, thymidylat 64.7 3 0.0001 35.9 2.2 19 129-147 3-21 (204)
363 3p32_A Probable GTPase RV1496/ 64.5 49 0.0017 31.2 11.0 16 132-147 81-96 (355)
364 1w36_B RECB, exodeoxyribonucle 64.4 12 0.00041 42.0 7.6 58 132-189 18-79 (1180)
365 4f4c_A Multidrug resistance pr 64.3 10 0.00034 43.1 7.0 41 238-278 570-610 (1321)
366 3d3q_A TRNA delta(2)-isopenten 64.2 3.8 0.00013 38.7 2.9 18 132-149 9-26 (340)
367 1hv8_A Putative ATP-dependent 64.2 16 0.00055 34.2 7.6 74 166-249 238-315 (367)
368 2c95_A Adenylate kinase 1; tra 64.2 4.9 0.00017 34.1 3.6 22 128-149 7-28 (196)
369 3t61_A Gluconokinase; PSI-biol 64.1 3.1 0.00011 35.8 2.2 19 131-149 19-37 (202)
370 2db3_A ATP-dependent RNA helic 64.1 19 0.00067 35.1 8.3 69 169-247 303-375 (434)
371 2j0s_A ATP-dependent RNA helic 64.0 20 0.00067 34.5 8.3 72 167-248 277-352 (410)
372 1vma_A Cell division protein F 64.0 6.4 0.00022 36.6 4.5 18 132-149 106-123 (306)
373 2rhm_A Putative kinase; P-loop 63.9 3.1 0.00011 35.3 2.2 19 131-149 6-24 (193)
374 4a74_A DNA repair and recombin 63.7 6.5 0.00022 34.3 4.4 19 129-147 24-42 (231)
375 1tev_A UMP-CMP kinase; ploop, 63.5 2.9 9.9E-05 35.5 1.9 19 131-149 4-22 (196)
376 2yjt_D ATP-dependent RNA helic 67.3 1.5 5.1E-05 36.8 0.0 73 166-248 30-106 (170)
377 3uie_A Adenylyl-sulfate kinase 63.3 3.9 0.00013 35.2 2.7 21 129-149 24-44 (200)
378 1ak2_A Adenylate kinase isoenz 63.3 4.4 0.00015 35.9 3.1 20 130-149 16-35 (233)
379 1rj9_A FTSY, signal recognitio 63.2 7.1 0.00024 36.3 4.6 17 130-146 102-118 (304)
380 1c4o_A DNA nucleotide excision 63.2 31 0.0011 35.9 10.0 77 166-252 439-519 (664)
381 2r2a_A Uncharacterized protein 62.9 4.9 0.00017 34.7 3.3 17 133-149 8-24 (199)
382 1tq1_A AT5G66040, senescence-a 62.9 5.4 0.00018 31.5 3.3 40 334-373 78-118 (129)
383 2fsf_A Preprotein translocase 62.8 17 0.00057 38.7 7.7 80 327-412 104-200 (853)
384 1f2t_A RAD50 ABC-ATPase; DNA d 62.7 5.3 0.00018 32.6 3.3 15 132-146 25-39 (149)
385 1s96_A Guanylate kinase, GMP k 62.6 4.8 0.00016 35.4 3.2 20 127-146 13-32 (219)
386 2wem_A Glutaredoxin-related pr 62.6 17 0.00057 28.2 6.1 61 332-392 13-80 (118)
387 3sr0_A Adenylate kinase; phosp 62.5 5.3 0.00018 34.7 3.5 17 133-149 3-19 (206)
388 3o8b_A HCV NS3 protease/helica 62.5 11 0.00036 39.3 6.1 66 166-245 396-461 (666)
389 4a2q_A RIG-I, retinoic acid in 62.5 13 0.00044 39.7 7.2 71 338-412 296-377 (797)
390 3tbk_A RIG-I helicase domain; 62.2 8.2 0.00028 38.9 5.4 72 338-413 52-134 (555)
391 2v6i_A RNA helicase; membrane, 62.1 8.8 0.0003 37.6 5.4 67 166-244 171-238 (431)
392 2c9o_A RUVB-like 1; hexameric 62.1 4.3 0.00015 40.2 3.1 19 130-148 63-81 (456)
393 2yvu_A Probable adenylyl-sulfa 62.0 8 0.00027 32.6 4.5 20 130-149 13-32 (186)
394 2bdt_A BH3686; alpha-beta prot 61.9 4.6 0.00016 34.2 2.9 16 132-147 4-19 (189)
395 4fcw_A Chaperone protein CLPB; 61.9 5.1 0.00018 37.0 3.5 18 132-149 49-66 (311)
396 1via_A Shikimate kinase; struc 61.8 5.1 0.00017 33.5 3.1 18 132-149 6-23 (175)
397 3hix_A ALR3790 protein; rhodan 61.7 6.4 0.00022 29.8 3.4 40 334-373 48-88 (106)
398 3ice_A Transcription terminati 61.6 39 0.0013 32.5 9.3 33 116-148 157-192 (422)
399 3fb4_A Adenylate kinase; psych 61.5 3.7 0.00013 35.7 2.2 18 132-149 2-19 (216)
400 3kta_A Chromosome segregation 61.4 5.3 0.00018 33.5 3.2 15 132-146 28-42 (182)
401 1nks_A Adenylate kinase; therm 61.3 3.6 0.00012 34.8 2.1 18 132-149 3-20 (194)
402 1m7g_A Adenylylsulfate kinase; 61.2 4.8 0.00016 34.9 2.9 33 116-149 12-44 (211)
403 2ius_A DNA translocase FTSK; n 61.2 12 0.00042 37.4 6.2 18 130-147 167-184 (512)
404 2wv9_A Flavivirin protease NS2 61.1 9.3 0.00032 39.9 5.5 68 166-245 410-478 (673)
405 3eph_A TRNA isopentenyltransfe 61.0 4.5 0.00015 39.2 2.9 18 132-149 4-21 (409)
406 3pxg_A Negative regulator of g 61.0 9.9 0.00034 37.7 5.6 25 130-155 201-225 (468)
407 2plr_A DTMP kinase, probable t 60.9 3.4 0.00012 35.6 1.9 20 130-149 4-23 (213)
408 1nij_A Hypothetical protein YJ 60.7 6.1 0.00021 37.0 3.8 15 132-146 6-20 (318)
409 3eiq_A Eukaryotic initiation f 60.7 25 0.00084 33.7 8.3 73 337-412 107-189 (414)
410 1zu4_A FTSY; GTPase, signal re 60.7 8 0.00027 36.2 4.5 18 132-149 107-124 (320)
411 1gvn_B Zeta; postsegregational 60.5 3.4 0.00012 38.1 1.9 16 132-147 35-50 (287)
412 3umf_A Adenylate kinase; rossm 60.5 5 0.00017 35.2 2.9 20 130-149 29-48 (217)
413 2iut_A DNA translocase FTSK; n 60.2 12 0.00042 37.9 6.0 25 131-156 215-239 (574)
414 1tf5_A Preprotein translocase 60.0 23 0.0008 37.6 8.2 69 337-411 123-208 (844)
415 1in4_A RUVB, holliday junction 59.9 5.3 0.00018 37.7 3.2 18 131-148 52-69 (334)
416 2bwj_A Adenylate kinase 5; pho 59.4 4.1 0.00014 34.7 2.2 21 129-149 11-31 (199)
417 1xjc_A MOBB protein homolog; s 59.1 10 0.00035 31.7 4.5 15 132-146 6-20 (169)
418 2iyv_A Shikimate kinase, SK; t 59.0 6.5 0.00022 33.1 3.3 19 131-149 3-21 (184)
419 4anj_A Unconventional myosin-V 59.0 10 0.00036 41.5 5.6 68 88-156 93-169 (1052)
420 3dl0_A Adenylate kinase; phosp 58.9 5.5 0.00019 34.6 2.9 18 132-149 2-19 (216)
421 1qxn_A SUD, sulfide dehydrogen 58.9 9.6 0.00033 30.5 4.2 40 334-373 78-118 (137)
422 2k0z_A Uncharacterized protein 58.8 15 0.00053 27.8 5.2 39 335-373 53-91 (110)
423 2pez_A Bifunctional 3'-phospho 58.7 4.2 0.00014 34.2 2.0 19 130-148 5-23 (179)
424 1qf9_A UMP/CMP kinase, protein 58.6 5.6 0.00019 33.6 2.9 18 132-149 8-25 (194)
425 2wci_A Glutaredoxin-4; redox-a 58.6 22 0.00074 28.4 6.2 63 331-393 27-95 (135)
426 1aky_A Adenylate kinase; ATP:A 58.5 6.2 0.00021 34.4 3.2 20 130-149 4-23 (220)
427 3vkg_A Dynein heavy chain, cyt 58.4 25 0.00084 43.5 9.0 48 101-149 874-925 (3245)
428 3lnc_A Guanylate kinase, GMP k 58.3 4.4 0.00015 35.8 2.2 19 128-146 25-43 (231)
429 1e6c_A Shikimate kinase; phosp 58.1 6 0.0002 32.8 2.9 19 131-149 3-21 (173)
430 1zd8_A GTP:AMP phosphotransfer 58.0 5.6 0.00019 34.9 2.9 18 130-147 7-24 (227)
431 3f9v_A Minichromosome maintena 57.9 5.7 0.00019 40.9 3.2 15 132-146 329-343 (595)
432 1zak_A Adenylate kinase; ATP:A 57.8 6.7 0.00023 34.2 3.3 19 131-149 6-24 (222)
433 1ukz_A Uridylate kinase; trans 57.8 4.7 0.00016 34.6 2.2 16 132-147 17-32 (203)
434 2xau_A PRE-mRNA-splicing facto 57.7 19 0.00066 38.2 7.4 75 166-246 303-393 (773)
435 2r62_A Cell division protease 57.7 3 0.0001 37.7 1.0 19 130-148 44-62 (268)
436 1c9k_A COBU, adenosylcobinamid 57.6 8.5 0.00029 32.6 3.7 44 133-188 2-45 (180)
437 2pt5_A Shikimate kinase, SK; a 57.5 4.8 0.00016 33.2 2.2 18 132-149 2-19 (168)
438 2qt1_A Nicotinamide riboside k 57.3 3.3 0.00011 35.8 1.2 18 129-146 20-37 (207)
439 2cdn_A Adenylate kinase; phosp 57.2 6.1 0.00021 33.8 2.9 19 131-149 21-39 (201)
440 1ye8_A Protein THEP1, hypothet 57.1 6.5 0.00022 33.2 3.0 15 132-146 2-16 (178)
441 3l9o_A ATP-dependent RNA helic 56.9 11 0.00037 41.9 5.4 71 331-412 220-296 (1108)
442 1cke_A CK, MSSA, protein (cyti 56.8 6.2 0.00021 34.5 2.9 19 131-149 6-24 (227)
443 2wwf_A Thymidilate kinase, put 56.5 5.4 0.00019 34.4 2.5 21 129-149 9-29 (212)
444 2oca_A DAR protein, ATP-depend 56.4 62 0.0021 32.0 10.7 74 168-250 349-426 (510)
445 2jlq_A Serine protease subunit 56.3 13 0.00045 36.6 5.5 67 167-245 189-256 (451)
446 3mm4_A Histidine kinase homolo 56.2 91 0.0031 26.3 12.0 128 128-281 18-161 (206)
447 2i3b_A HCR-ntpase, human cance 55.8 7.9 0.00027 33.0 3.3 41 238-281 103-145 (189)
448 2jaq_A Deoxyguanosine kinase; 55.8 6.6 0.00023 33.5 2.9 17 132-148 2-18 (205)
449 2zan_A Vacuolar protein sortin 55.8 6.1 0.00021 38.9 2.9 56 90-148 128-185 (444)
450 2pbr_A DTMP kinase, thymidylat 55.8 5.3 0.00018 33.8 2.2 17 133-149 3-19 (195)
451 2fsx_A RV0390, COG0607: rhodan 55.6 14 0.00048 29.9 4.7 38 336-373 78-116 (148)
452 1jjv_A Dephospho-COA kinase; P 55.4 6.8 0.00023 33.7 2.9 16 132-147 4-19 (206)
453 2z0h_A DTMP kinase, thymidylat 55.3 5.5 0.00019 33.9 2.2 17 133-149 3-19 (197)
454 4gl2_A Interferon-induced heli 55.3 2.9 0.0001 43.9 0.5 70 339-412 57-142 (699)
455 2f1r_A Molybdopterin-guanine d 55.2 5.5 0.00019 33.4 2.2 16 132-147 4-19 (171)
456 3b9q_A Chloroplast SRP recepto 55.2 11 0.00038 34.9 4.5 18 130-147 100-117 (302)
457 3tif_A Uncharacterized ABC tra 55.1 5.3 0.00018 35.5 2.2 17 129-145 30-46 (235)
458 3c8u_A Fructokinase; YP_612366 55.0 5.8 0.0002 34.3 2.4 17 130-146 22-38 (208)
459 1e4v_A Adenylate kinase; trans 54.9 6.9 0.00024 33.9 2.9 18 132-149 2-19 (214)
460 1nn5_A Similar to deoxythymidy 54.9 6.1 0.00021 34.1 2.5 21 129-149 8-28 (215)
461 1ry6_A Internal kinesin; kines 54.8 8.2 0.00028 36.8 3.5 18 129-146 82-101 (360)
462 2v9p_A Replication protein E1; 54.5 7.2 0.00025 36.2 3.0 18 129-146 125-142 (305)
463 3k1j_A LON protease, ATP-depen 54.3 11 0.00036 38.9 4.5 22 126-147 56-77 (604)
464 3be4_A Adenylate kinase; malar 54.2 7.8 0.00027 33.7 3.1 19 131-149 6-24 (217)
465 3qf7_A RAD50; ABC-ATPase, ATPa 54.2 7.6 0.00026 37.1 3.3 16 132-147 25-40 (365)
466 3asz_A Uridine kinase; cytidin 54.1 6.8 0.00023 33.8 2.7 18 130-147 6-23 (211)
467 2vli_A Antibiotic resistance p 54.0 4.5 0.00015 34.0 1.4 20 130-149 5-24 (183)
468 3b6e_A Interferon-induced heli 54.0 7 0.00024 33.6 2.8 55 338-396 82-140 (216)
469 3a4m_A L-seryl-tRNA(SEC) kinas 53.9 5.7 0.0002 35.8 2.2 18 132-149 6-23 (260)
470 3nhv_A BH2092 protein; alpha-b 53.8 7.3 0.00025 31.5 2.6 39 335-373 69-109 (144)
471 2if2_A Dephospho-COA kinase; a 53.7 7.4 0.00025 33.3 2.9 16 132-147 3-18 (204)
472 1q57_A DNA primase/helicase; d 53.6 10 0.00034 38.1 4.2 50 129-186 241-290 (503)
473 3tlx_A Adenylate kinase 2; str 53.6 8.7 0.0003 34.2 3.4 20 130-149 29-48 (243)
474 2lci_A Protein OR36; structura 53.2 62 0.0021 23.4 9.8 77 319-395 32-108 (134)
475 1g8p_A Magnesium-chelatase 38 53.1 3.8 0.00013 38.7 0.9 19 130-148 45-63 (350)
476 2whx_A Serine protease/ntpase/ 52.6 23 0.00077 36.6 6.7 68 166-245 355-423 (618)
477 2xb4_A Adenylate kinase; ATP-b 52.5 8 0.00027 33.9 2.9 17 133-149 3-19 (223)
478 1g8x_A Myosin II heavy chain f 52.3 22 0.00074 39.0 6.7 64 91-155 125-196 (1010)
479 1nkt_A Preprotein translocase 52.2 33 0.0011 36.7 7.8 70 337-412 151-237 (922)
480 3qks_A DNA double-strand break 52.1 9.6 0.00033 32.9 3.3 15 132-146 25-39 (203)
481 1vee_A Proline-rich protein fa 52.1 18 0.0006 28.7 4.7 37 337-373 73-110 (134)
482 2z0m_A 337AA long hypothetical 52.1 34 0.0012 31.4 7.5 70 338-412 56-135 (337)
483 2cbz_A Multidrug resistance-as 52.0 6.4 0.00022 35.0 2.2 19 128-146 29-47 (237)
484 2bbw_A Adenylate kinase 4, AK4 52.0 8.2 0.00028 34.4 2.9 18 130-147 27-44 (246)
485 1uf9_A TT1252 protein; P-loop, 51.6 8.3 0.00028 32.8 2.8 16 132-147 10-25 (203)
486 1g41_A Heat shock protein HSLU 51.6 8.6 0.00029 37.8 3.2 18 130-147 50-67 (444)
487 2p5t_B PEZT; postsegregational 51.6 5.1 0.00018 36.0 1.5 17 132-148 34-50 (253)
488 3auy_A DNA double-strand break 51.4 8.9 0.00031 36.7 3.3 15 132-146 27-41 (371)
489 1sgw_A Putative ABC transporte 51.0 7.1 0.00024 34.1 2.2 19 128-146 33-51 (214)
490 4e22_A Cytidylate kinase; P-lo 51.0 9.4 0.00032 34.2 3.2 19 129-147 26-44 (252)
491 2v3c_C SRP54, signal recogniti 51.0 9.1 0.00031 37.5 3.3 18 132-149 101-118 (432)
492 3cmw_A Protein RECA, recombina 51.0 18 0.00062 41.9 6.0 39 129-175 33-71 (1706)
493 3tqc_A Pantothenate kinase; bi 50.9 27 0.00091 32.6 6.3 15 133-147 95-109 (321)
494 2ipc_A Preprotein translocase 50.5 31 0.0011 37.0 7.2 55 336-396 118-176 (997)
495 2grj_A Dephospho-COA kinase; T 50.2 7.5 0.00026 33.3 2.2 18 132-149 14-31 (192)
496 4db1_A Myosin-7; S1DC, cardiac 50.1 16 0.00053 38.8 5.0 65 91-156 124-196 (783)
497 2og2_A Putative signal recogni 50.0 14 0.0005 35.0 4.4 16 132-147 159-174 (359)
498 3zq6_A Putative arsenical pump 49.7 16 0.00054 34.1 4.7 32 133-172 17-48 (324)
499 3bs4_A Uncharacterized protein 49.7 21 0.00071 32.2 5.2 55 127-190 18-72 (260)
500 1htw_A HI0065; nucleotide-bind 49.3 8.8 0.0003 31.6 2.5 25 127-151 30-54 (158)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-69 Score=549.78 Aligned_cols=390 Identities=40% Similarity=0.700 Sum_probs=359.4
Q ss_pred cCceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcC
Q 010876 79 REITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQ 158 (498)
Q Consensus 79 ~~i~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~ 158 (498)
..+.+.+.+.|.|+.+|+++++++.+++.+.+.||.+|+|+|.++|+.++++++++++|+||||||++|++|++.++...
T Consensus 42 ~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 42 IPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp SCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred ceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCccc
Q 010876 159 PFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNL 238 (498)
Q Consensus 159 ~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l 238 (498)
.......++++|||+||++||.|+++++.+++...++++.+++|+.....+...+..+++|+|+||++|.+++.+....+
T Consensus 122 ~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l 201 (434)
T 2db3_A 122 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITF 201 (434)
T ss_dssp CCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCC
T ss_pred ccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCccc
Confidence 54333457889999999999999999999999888899999999998888888888899999999999999999888889
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhc--CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeE
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQI--RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV 316 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (498)
.++++||+||||++.+++|...+..++..+ ++..|+++||||+|+.+..++..++.++..+.+.... .....+.+.+
T Consensus 202 ~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~ 280 (434)
T 2db3_A 202 EDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTI 280 (434)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEE
T ss_pred ccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEE
Confidence 999999999999999999999999999875 5789999999999999999999999999888776654 4456677888
Q ss_pred eecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 010876 317 DIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 396 (498)
Q Consensus 317 ~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 396 (498)
..+....|...+.+++.... .++||||++++.|+.+++.|+..++++..+||++++.+|+.+++.|++|+.+|||||+
T Consensus 281 ~~~~~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 358 (434)
T 2db3_A 281 YEVNKYAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS 358 (434)
T ss_dssp EECCGGGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG
T ss_pred EEeCcHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch
Confidence 88888899999999988753 3599999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEecc-ccHHHHHHHHHHHHHhCCCCCHHHHhh
Q 010876 397 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA-ANARFAKELITILEEAGQKVSPELAAM 471 (498)
Q Consensus 397 ~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~l~~~ 471 (498)
++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.+++|+++ .+...+.++.++++++++++|++|.+|
T Consensus 359 v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 359 VASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred hhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 999999999999999999999999999999999999999999999994 578899999999999999999998764
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.4e-63 Score=503.24 Aligned_cols=395 Identities=45% Similarity=0.720 Sum_probs=355.6
Q ss_pred CceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCC
Q 010876 80 EITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 159 (498)
Q Consensus 80 ~i~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~ 159 (498)
.+.+.+...|+++.+|+++++++.+.+.+...+|.+|+|+|.++++.++.++++++++|||+|||++|++|++..+....
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999998876532
Q ss_pred CC-------------CCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHH
Q 010876 160 FL-------------APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 226 (498)
Q Consensus 160 ~~-------------~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~ 226 (498)
.. ....++++||++|+++|+.|+++.+.++....++++..++|+.....+...+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 10 11234779999999999999999999999888899999999998888888888889999999999
Q ss_pred HHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhc--CC--CCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEc
Q 010876 227 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 302 (498)
Q Consensus 227 l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 302 (498)
|.+++......+.++++||+||||++.+++|...+..++... ++ ..|++++|||+++.+..+...++.++..+...
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 999998888888999999999999999999999999998753 22 67899999999999999999999888877665
Q ss_pred CCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHH
Q 010876 303 SPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLS 382 (498)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~ 382 (498)
... .....+.+.+..+....+...+.+++.....+.++||||+++++++.+++.|+..++.+..+||++++++|..+++
T Consensus 242 ~~~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 320 (417)
T 2i4i_A 242 RVG-STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320 (417)
T ss_dssp -----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCC-CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHH
Confidence 543 3445667777777888899999999988767789999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCC
Q 010876 383 EFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 462 (498)
Q Consensus 383 ~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 462 (498)
.|++|+.+|||||+++++|+|+|++++||++++|++..+|+||+||+||.|+.|.|++|+++.+...+..+.+.++++.+
T Consensus 321 ~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 321 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp HHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhhhcCC
Q 010876 463 KVSPELAAMGRGA 475 (498)
Q Consensus 463 ~~~~~l~~~~~~~ 475 (498)
++|++|.+++...
T Consensus 401 ~~~~~l~~~~~~~ 413 (417)
T 2i4i_A 401 EVPSWLENMAYEH 413 (417)
T ss_dssp CCCHHHHHHHTCS
T ss_pred cCCHHHHHHHHhh
Confidence 9999999998765
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5.6e-60 Score=477.37 Aligned_cols=374 Identities=32% Similarity=0.569 Sum_probs=334.0
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 010876 87 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 166 (498)
Q Consensus 87 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 166 (498)
..+++..+|+++++++.+++.+...||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+
T Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~ 105 (410)
T 2j0s_A 31 EEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRE 105 (410)
T ss_dssp TTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCS
T ss_pred CCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCC
Confidence 334556789999999999999999999999999999999999999999999999999999999998876432 236
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEe
Q 010876 167 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 246 (498)
Q Consensus 167 ~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~ 246 (498)
+++||++|+++|+.|+++.+.+++...++.+..++|+.....+...+..+++|+|+||++|.+++.+....+.++++||+
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 78999999999999999999999998899999999999888887888888999999999999999888888899999999
Q ss_pred ccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecch-hhhH
Q 010876 247 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-SQKY 325 (498)
Q Consensus 247 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~ 325 (498)
||||++.+++|...+..++..+++..|++++|||+++.+..+...++.++..+.+.... .....+.+.+..+.. ..+.
T Consensus 186 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~ 264 (410)
T 2j0s_A 186 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE-LTLEGIKQFFVAVEREEWKF 264 (410)
T ss_dssp ETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG-CSCTTEEEEEEEESSTTHHH
T ss_pred ccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc-ccCCCceEEEEEeCcHHhHH
Confidence 99999999999999999999999999999999999999988888888888876654433 233445555554444 4478
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC
Q 010876 326 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 405 (498)
Q Consensus 326 ~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~ 405 (498)
..+.+++.... ..++||||+++++++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 265 ~~l~~~~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 343 (410)
T 2j0s_A 265 DTLCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 343 (410)
T ss_dssp HHHHHHHHHHT-SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHhcC-CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcc
Confidence 88888887753 45999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHH
Q 010876 406 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPE 467 (498)
Q Consensus 406 ~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 467 (498)
++++||++|+|++...|+||+||+||.|+.|.|++|+++.+...++.+.+++.....++|..
T Consensus 344 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 344 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp TEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred cCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 99999999999999999999999999999999999999999999999998887776666644
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=8.8e-59 Score=469.23 Aligned_cols=379 Identities=32% Similarity=0.559 Sum_probs=320.6
Q ss_pred CCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCC
Q 010876 86 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 165 (498)
Q Consensus 86 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 165 (498)
...+....+|+++++++.+++.+.+.++..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~ 107 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LK 107 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SC
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CC
Confidence 3445667889999999999999999999999999999999999999999999999999999999999887542 23
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHh-cCCcEEEcChHHHHHHHhccCcccccccEE
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 244 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~v 244 (498)
+.++||++|+++|+.|+.+.+.+++...+..+..++++.........+. ..++|+|+||++|.+.+......+.++++|
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 187 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEE
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEE
Confidence 6679999999999999999999999888899999999887766666655 678999999999999998888888899999
Q ss_pred EeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEe-ecchhh
Q 010876 245 VLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD-IVSESQ 323 (498)
Q Consensus 245 I~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 323 (498)
|+||||++.+++|...+..++..+++..|+++||||++..+..+...++.++..+........ ...+.+.+. ......
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 266 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELT-LEGIRQFYINVEREEW 266 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCC-TTSCCEEEEECSSSTT
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccC-CCCceEEEEEeChHHh
Confidence 999999999999999999999999999999999999999999999999998887766555433 333444443 334455
Q ss_pred hHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCC
Q 010876 324 KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 403 (498)
Q Consensus 324 k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gld 403 (498)
+...+..++... ..+++||||+++++++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 267 ~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 345 (414)
T 3eiq_A 267 KLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 345 (414)
T ss_dssp HHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CC
T ss_pred HHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCC
Confidence 788888887765 4468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHhh
Q 010876 404 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 471 (498)
Q Consensus 404 i~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 471 (498)
+|++++||+++.|++..+|+||+||+||.|+.|.|++|+++.+...+..+.++++....++|..+.++
T Consensus 346 ip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 346 VQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred ccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999988998887654
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6.8e-58 Score=460.64 Aligned_cols=371 Identities=30% Similarity=0.512 Sum_probs=329.9
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEE
Q 010876 90 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 169 (498)
Q Consensus 90 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 169 (498)
.+..+|+++++++.+++.+.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~ 92 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQA 92 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccE
Confidence 345689999999999999999999999999999999999999999999999999999999999886542 235679
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccc
Q 010876 170 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 249 (498)
Q Consensus 170 lvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~ 249 (498)
||++|+++|+.|+.+.+.++....++.+..++|+.........+...++|+|+||++|.+++......+.++++||+|||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 99999999999999999999988889999999988776666667778999999999999998887778899999999999
Q ss_pred hhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHH
Q 010876 250 DRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 329 (498)
Q Consensus 250 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 329 (498)
|++.+..|...+..++..+++..++++||||++..+......++..+..+..... .....+.+.+..+....+...+.
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~ 250 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLN 250 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHH
Confidence 9999888889999999988889999999999999999999988888876544332 33455666777777788888888
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCE
Q 010876 330 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 409 (498)
Q Consensus 330 ~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~ 409 (498)
.++... ..+++||||+++++++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 251 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~ 329 (400)
T 1s2m_A 251 TLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNV 329 (400)
T ss_dssp HHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEE
T ss_pred HHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCE
Confidence 888764 4569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHH
Q 010876 410 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPEL 468 (498)
Q Consensus 410 VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l 468 (498)
||++++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+....+++|..+
T Consensus 330 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 330 VINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp EEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred EEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccc
Confidence 99999999999999999999999999999999999999888888887766666666544
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.5e-57 Score=454.03 Aligned_cols=370 Identities=28% Similarity=0.513 Sum_probs=326.8
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010876 93 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 172 (498)
Q Consensus 93 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl 172 (498)
.+|+++++++.+++.+...|+.+|+|+|.++++.++.++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999998876542 235679999
Q ss_pred cCcHHHHHHHHHHHHHhcCCC-CceEEEEeCCCCCchhHHHHhc-CCcEEEcChHHHHHHHhccCcccccccEEEeccch
Q 010876 173 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 250 (498)
Q Consensus 173 ~P~~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h 250 (498)
+|+++|+.|+.+.+.++.... ++++..++|+.........+.. .++|+|+||++|.+++......+.++++||+||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999997765 7889999998876666555544 37999999999999988887788999999999999
Q ss_pred hhhcC-CcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHH
Q 010876 251 RMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 329 (498)
Q Consensus 251 ~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 329 (498)
++.++ ++...+..++...++..|++++|||+++.+..+...++.++..+............+.+.+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 99874 67888888988888899999999999999999999999999887766554444556677777777888888888
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCE
Q 010876 330 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 409 (498)
Q Consensus 330 ~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~ 409 (498)
+++... ..+++||||+++++++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 243 ~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 243 DLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321 (391)
T ss_dssp HHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEE
T ss_pred HHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCE
Confidence 888875 5579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhcccccCCCcceEEEEeccc-cHHHHHHHHHHHHHhCCCCCHHH
Q 010876 410 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPEL 468 (498)
Q Consensus 410 VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~l 468 (498)
||++++|++...|+||+||+||.|+.|.|++|+++. +..++..+.+.+....+++|.++
T Consensus 322 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
T 1xti_A 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 381 (391)
T ss_dssp EEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCC
T ss_pred EEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccc
Confidence 999999999999999999999999999999999976 55667777777766666666653
No 7
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7.7e-57 Score=472.63 Aligned_cols=365 Identities=32% Similarity=0.483 Sum_probs=301.7
Q ss_pred cCCcccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHhh--cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCC
Q 010876 92 VKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 165 (498)
Q Consensus 92 ~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l--~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 165 (498)
..+|+++ .+++.+++.+...||..|+|+|.++++.++ .+++++++||||+|||++|++|++.++...... ...
T Consensus 67 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~ 145 (563)
T 3i5x_A 67 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQY 145 (563)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STT
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccC
Confidence 3445544 399999999999999999999999999999 678999999999999999999999998875422 223
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcC----CCCceEEEEeCCCCCchhHHHH-hcCCcEEEcChHHHHHHHhcc-Ccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGA----SSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESH-NTNLR 239 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ivi~T~~~l~~~l~~~-~~~l~ 239 (498)
++++|||+||++||.|+++.+.++.. .....+..++++.....+...+ ..+++|+|+||++|.+++.+. ...+.
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 225 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 225 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccc
Confidence 56899999999999999999998642 2346678888888776666655 447899999999999988764 34578
Q ss_pred cccEEEeccchhhhcCCcHHHHHHHHHhcC-------CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCC---cccc
Q 010876 240 RVTYLVLDEADRMLDMGFEPQIKKILSQIR-------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD---LKAN 309 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 309 (498)
++++|||||||++.+++|...+..++..++ +..|+++||||+++.+..++..++.++..+.+.... ....
T Consensus 226 ~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (563)
T 3i5x_A 226 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH 305 (563)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSC
T ss_pred cceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccc
Confidence 899999999999999999999998876652 377999999999999999999998887776654322 1223
Q ss_pred cceeeeEeecch-hhh----HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC---CCCeEEecCCCCHHHHHHHH
Q 010876 310 HAIRQHVDIVSE-SQK----YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---GWPALSIHGDKSQAERDWVL 381 (498)
Q Consensus 310 ~~~~~~~~~~~~-~~k----~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~---~~~~~~lh~~~~~~~r~~~~ 381 (498)
..+.+.+..... ..+ ...+...+.....+.++||||+++..|+.+++.|+.. ++.+..+||++++.+|..++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~ 385 (563)
T 3i5x_A 306 ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 385 (563)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred ccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Confidence 334444443332 222 2333333444355679999999999999999999876 89999999999999999999
Q ss_pred HHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHH
Q 010876 382 SEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 457 (498)
Q Consensus 382 ~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l 457 (498)
+.|++|+.+|||||+++++|||+|++++||++++|.++..|+||+||+||.|+.|.|++|+++.+...++.+.+..
T Consensus 386 ~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 386 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999988887776654
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-55 Score=438.72 Aligned_cols=357 Identities=37% Similarity=0.602 Sum_probs=318.3
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC-CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 170 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 170 (498)
..+|+++++++.+.+.+.+.|+.+|+|+|.++++.++++ +++++.+|||+|||++|++|++..+... .++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 457999999999999999999999999999999999988 6899999999999999999988876542 367799
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccch
Q 010876 171 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 250 (498)
Q Consensus 171 vl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h 250 (498)
|++|+++|+.|+.+.+.++....++.+..++++.........+. .++|+|+||++|.+.+......+.++++||+||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998888889999999887665555544 68999999999999998887788999999999999
Q ss_pred hhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHH
Q 010876 251 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 330 (498)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 330 (498)
++.+++|...+..++..+++..+++++|||++.........++.++..+.... ...+.+.+..+....+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHHH
Confidence 99999999999999999999999999999999999888888887766554322 2245556666677888888888
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEE
Q 010876 331 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 410 (498)
Q Consensus 331 ~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 410 (498)
++.. ...++||||+++++++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 233 ~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 233 LLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 8773 55689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCC
Q 010876 411 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 462 (498)
Q Consensus 411 I~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 462 (498)
|++++|+|+.+|+||+||+||.|++|.+++++++.+...+..+.+.++..-.
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCC
T ss_pred EEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999998888888777655433
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.1e-57 Score=458.21 Aligned_cols=377 Identities=33% Similarity=0.565 Sum_probs=189.3
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCC
Q 010876 87 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 166 (498)
Q Consensus 87 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 166 (498)
...++..+|+++++++.+++.+...|+.+|+|+|.++++.++.++++++++|||+|||++|++|++..+... ..+
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~ 89 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKA 89 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCS
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCC
Confidence 345667889999999999999999999999999999999999999999999999999999999999886542 236
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEe
Q 010876 167 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 246 (498)
Q Consensus 167 ~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~ 246 (498)
+++||++|+++|+.|+++.+.++....++.+..++|+.........+. +++|+|+||++|.+.+......+.++++||+
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 789999999999999999999998888899999999887655554444 5799999999999999887777889999999
Q ss_pred ccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecch-hhhH
Q 010876 247 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-SQKY 325 (498)
Q Consensus 247 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~ 325 (498)
||||++.+.+|...+..++..+++..|++++|||+++.+..+...++.++..+........ ...+.+.+..+.. ..+.
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 247 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT-LEGIKQFYVNVEEEEYKY 247 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcccc-CCCceEEEEEcCchhhHH
Confidence 9999999999999999999999999999999999999999999999998888776654422 2233333333333 3366
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC
Q 010876 326 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 405 (498)
Q Consensus 326 ~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~ 405 (498)
..+..++... ...++||||+++++++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 248 ~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~ 326 (394)
T 1fuu_A 248 ECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQ 326 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcc
Confidence 6666666554 446899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHhh
Q 010876 406 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 471 (498)
Q Consensus 406 ~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 471 (498)
++++||++++|+++..|+||+||+||.|++|.|++|+++.+...+..+.+++......+|..+.++
T Consensus 327 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (394)
T 1fuu_A 327 QVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL 392 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred cCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhh
Confidence 999999999999999999999999999999999999999999999999998888888887766543
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.5e-55 Score=443.64 Aligned_cols=369 Identities=28% Similarity=0.455 Sum_probs=314.1
Q ss_pred CCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCC
Q 010876 88 VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 165 (498)
Q Consensus 88 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 165 (498)
...+..+|+++++++.+++.+.+.|+..|+|+|.++++.++++ +++++++|||+|||++|++|++..+... ..
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~ 94 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NK 94 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SC
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CC
Confidence 3455788999999999999999999999999999999999987 8999999999999999999999887642 23
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCC-CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc-cCcccccccE
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTY 243 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~-~~~~l~~~~~ 243 (498)
++++||++|+++|+.|+++.+.++.... ++.+....++....... ...++|+|+||++|.+++.+ ....+.++++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~ 171 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 171 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcE
Confidence 5689999999999999999999987653 57777777766543322 34579999999999998865 5566789999
Q ss_pred EEeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEee-cch
Q 010876 244 LVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI-VSE 321 (498)
Q Consensus 244 vI~DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 321 (498)
||+||||++.+ .++...+..+...+++..|++++|||+++.+..+...++.++..+...... .....+.+.+.. ...
T Consensus 172 iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 172 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSR 250 (412)
T ss_dssp EEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGG-SSCTTEEEEEEECSSH
T ss_pred EEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccc-ccccCceEEEEEcCCh
Confidence 99999999987 678888999999999999999999999999999999999888877655443 233344444433 345
Q ss_pred hhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q 010876 322 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 401 (498)
Q Consensus 322 ~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 401 (498)
..+...+..++... ...++||||+++.+|+.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 251 ~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 329 (412)
T 3fht_A 251 DEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARG 329 (412)
T ss_dssp HHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSS
T ss_pred HHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccC
Confidence 67777787777765 45699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCC------ChhHHHHhhcccccCCCcceEEEEecccc-HHHHHHHHHHHHHhCCCCCH
Q 010876 402 LDVKDVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITILEEAGQKVSP 466 (498)
Q Consensus 402 ldi~~v~~VI~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~ 466 (498)
+|+|++++||++++|+ +..+|+||+||+||.|+.|.+++|+++.+ ...+..+.+.+......++.
T Consensus 330 idip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 330 IDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp CCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred CCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 9999999999999994 67899999999999999999999998764 67788888877666555543
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=5.7e-55 Score=438.28 Aligned_cols=357 Identities=31% Similarity=0.527 Sum_probs=307.8
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010876 91 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 168 (498)
Q Consensus 91 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 168 (498)
...+|+++++++.+++.+.+.++.+|+|+|.++++.++.+ +++++++|||+|||++|++|++..+... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 3578999999999999999999999999999999999998 8999999999999999999999886542 24667
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEecc
Q 010876 169 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 248 (498)
Q Consensus 169 vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE 248 (498)
+||++|+++|+.|+++.+.+++...++.+...+++...... ...++|+|+||++|.+.+......+.++++||+||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999998888888888877654322 33679999999999999988878899999999999
Q ss_pred chhhhc-CCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeec-chhhhHH
Q 010876 249 ADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV-SESQKYN 326 (498)
Q Consensus 249 ~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~ 326 (498)
||++.+ .++...+..+...++++.|++++|||+++.+..+...++.++..+........ ...+.+.+... ....+..
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVN-VDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCS-CTTEEEEEEECSSHHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccc-cccccEEEEEcCchHHHHH
Confidence 999988 67888999999999999999999999999999999999888877655444322 33344444333 4556677
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 010876 327 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 406 (498)
Q Consensus 327 ~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 406 (498)
.+..++... ..+++||||+++.+|+.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 233 ~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 233 VLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 776666654 4579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC------ChhHHHHhhcccccCCCcceEEEEecccc-HHHHHHHHHHHH
Q 010876 407 VKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITILE 458 (498)
Q Consensus 407 v~~VI~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~-~~~~~~l~~~l~ 458 (498)
+++||++++|+ |+.+|+||+||+||.|+.|.+++|++..+ ......+.+.+.
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999 99999999999999999999999998754 445555554443
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.9e-55 Score=460.09 Aligned_cols=367 Identities=31% Similarity=0.479 Sum_probs=304.2
Q ss_pred CCCcCCcccCC----CCHHHHHHHHHCCCCCCcHHHHHHHHHhh--cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCC
Q 010876 89 PKPVKSFRDVG----FPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA 162 (498)
Q Consensus 89 ~~~~~~f~~~~----l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l--~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~ 162 (498)
+.+..+|+++. +++.+++.+...||..|+|+|.++++.++ .+++++++||||+|||++|++|++..+......
T Consensus 13 ~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~- 91 (579)
T 3sqw_A 13 NSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD- 91 (579)
T ss_dssp SCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-
T ss_pred CCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc-
Confidence 33444555553 99999999999999999999999999999 678999999999999999999999998775322
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHHhcC----CCCceEEEEeCCCCCchhHHHHh-cCCcEEEcChHHHHHHHhcc-Cc
Q 010876 163 PGDGPIVLVLAPTRELAVQIQQESTKFGA----SSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESH-NT 236 (498)
Q Consensus 163 ~~~~~~vlvl~P~~~La~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivi~T~~~l~~~l~~~-~~ 236 (498)
...++++|||+||++|+.|+++.+.++.. ...+.+..++++.....+...+. .+++|+|+||++|.+++... ..
T Consensus 92 ~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~ 171 (579)
T 3sqw_A 92 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK 171 (579)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccc
Confidence 23367899999999999999999998752 23467888888887766666664 47899999999999988764 44
Q ss_pred ccccccEEEeccchhhhcCCcHHHHHHHHHhcC-------CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCC---c
Q 010876 237 NLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD---L 306 (498)
Q Consensus 237 ~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~ 306 (498)
.+..+++|||||||++.+++|...+..++..++ +..|+++||||+++.+..++..++.++..+.+.... .
T Consensus 172 ~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 251 (579)
T 3sqw_A 172 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251 (579)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred ccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccc
Confidence 578899999999999999999999988877653 377999999999999999999999888776654322 1
Q ss_pred ccccceeeeEeecch-hhh----HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC---CCCeEEecCCCCHHHHH
Q 010876 307 KANHAIRQHVDIVSE-SQK----YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---GWPALSIHGDKSQAERD 378 (498)
Q Consensus 307 ~~~~~~~~~~~~~~~-~~k----~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~---~~~~~~lh~~~~~~~r~ 378 (498)
.....+.+.+..... ..+ ...+...+.......++||||+++..|+.+++.|+.. ++.+..+||++++.+|.
T Consensus 252 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~ 331 (579)
T 3sqw_A 252 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 331 (579)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHH
T ss_pred ccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHH
Confidence 223344444443332 222 2333334444345679999999999999999999876 89999999999999999
Q ss_pred HHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHH
Q 010876 379 WVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 456 (498)
Q Consensus 379 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 456 (498)
.+++.|++|+.+|||||+++++|||+|++++||++++|.++..|+||+||+||.|+.|.|++|+++.+..++..+.+.
T Consensus 332 ~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 409 (579)
T 3sqw_A 332 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 409 (579)
T ss_dssp HHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888777654
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=8.2e-56 Score=455.56 Aligned_cols=374 Identities=29% Similarity=0.463 Sum_probs=179.6
Q ss_pred eEecCCCCCC---cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 82 TVEGRDVPKP---VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 82 ~~~~~~~~~~---~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
.+...+.+.| ..+|+++++++.+++.+...+|..|+|+|.++++.++.+ +++++++|||||||++|++|++..+.
T Consensus 78 ~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~ 157 (479)
T 3fmp_B 78 EVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (479)
T ss_dssp EEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCC
T ss_pred eecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHh
Confidence 3444444444 568999999999999999999999999999999999987 89999999999999999999987765
Q ss_pred cCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC-CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc-c
Q 010876 157 AQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-H 234 (498)
Q Consensus 157 ~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~-~ 234 (498)
.. ..++++|||+|+++|+.|+++.+.++.... ++.+....++....... ...++|+|+||++|.+++.+ .
T Consensus 158 ~~-----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~ 229 (479)
T 3fmp_B 158 PA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLK 229 (479)
T ss_dssp TT-----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSC
T ss_pred hc-----CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcC
Confidence 42 235689999999999999999999887653 56677777766543221 33578999999999999865 4
Q ss_pred CcccccccEEEeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCccccccee
Q 010876 235 NTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIR 313 (498)
Q Consensus 235 ~~~l~~~~~vI~DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (498)
...+.++++|||||+|++.+ .++...+..++..++...|++++|||++..+..++..++.++..+.+..... ....+.
T Consensus 230 ~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~ 308 (479)
T 3fmp_B 230 FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIK 308 (479)
T ss_dssp CCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------
T ss_pred CcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc-CcCCce
Confidence 56678999999999999987 5788888999999999999999999999999999999999988877765542 333444
Q ss_pred eeEeecc-hhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 010876 314 QHVDIVS-ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 392 (498)
Q Consensus 314 ~~~~~~~-~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vL 392 (498)
+.+..+. ...+...+..++... ...++||||+++..|+.++..|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iL 387 (479)
T 3fmp_B 309 QYYVLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEE
Confidence 4444333 345666666666554 34689999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccCCCCCCCEEEEcCCCC------ChhHHHHhhcccccCCCcceEEEEecccc-HHHHHHHHHHHHHhCCCCC
Q 010876 393 TATDVAARGLDVKDVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITILEEAGQKVS 465 (498)
Q Consensus 393 vaT~~~~~Gldi~~v~~VI~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ 465 (498)
|||+++++|+|+|++++||++|+|. +..+|+||+||+||.|+.|.|++|+++.+ ...+..+.+.+...-..++
T Consensus 388 v~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 9999999999999999999999994 66899999999999999999999998764 6677777777765555444
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.2e-53 Score=413.83 Aligned_cols=336 Identities=33% Similarity=0.551 Sum_probs=287.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHH
Q 010876 100 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 179 (498)
Q Consensus 100 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La 179 (498)
+++.+.+.+.+.|+.+|+|+|.++++.+++++++++.+|||+|||++|++|++.. +.++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999998764 45699999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHH
Q 010876 180 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP 259 (498)
Q Consensus 180 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~ 259 (498)
.|+++.+.+++...++.+..++++.........+. .++|+|+||++|.+.+......+.++++||+||||++.++++..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999999888899999999887666555554 48999999999999988877778999999999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCC
Q 010876 260 QIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGS 339 (498)
Q Consensus 260 ~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 339 (498)
.+..++...+...+++++|||+++........++.++..+... .....+.+.+..+....+ .....+.. ..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~ 221 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWR--SKVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSH--HHHHHHHT-CCCS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHH--HHHHHHHh-CCCC
Confidence 9999999999899999999999999999999888877665322 222333333333333222 22234433 3556
Q ss_pred eEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCCh
Q 010876 340 RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSL 419 (498)
Q Consensus 340 ~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~ 419 (498)
++||||+++++++.+++.|+ .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 89999999999999999886 57899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 010876 420 EDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 459 (498)
Q Consensus 420 ~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 459 (498)
..|+||+||+||.|++|.+++|+. .+....+.+.+.+..
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred HHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999999999999 888888888776643
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.2e-52 Score=434.37 Aligned_cols=342 Identities=21% Similarity=0.302 Sum_probs=279.6
Q ss_pred cccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010876 95 FRDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 173 (498)
Q Consensus 95 f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~ 173 (498)
+.++++++.+.+.|+. .|+..|+|+|.++|+.+++++++++++|||+|||++|++|++.. ..++|||+
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~~lVis 91 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGFTLVIC 91 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSEEEEEC
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCcEEEEe
Confidence 4457889999999998 69999999999999999999999999999999999999999742 45799999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHH---H---hcCCcEEEcChHHHH------HHHhccCcccccc
Q 010876 174 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L---QKGVEIVIATPGRLI------DMLESHNTNLRRV 241 (498)
Q Consensus 174 P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~Ivi~T~~~l~------~~l~~~~~~l~~~ 241 (498)
|+++|+.|+.+.+.++ ++.+..+.++......... + ....+|+|+||++|. +.+.. ...+.++
T Consensus 92 P~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i 166 (591)
T 2v1x_A 92 PLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRF 166 (591)
T ss_dssp SCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCE
T ss_pred CHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCC
Confidence 9999999999999998 4778888887765443222 2 356899999999874 22322 3346789
Q ss_pred cEEEeccchhhhcCC--cHHHHHH--HHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEe
Q 010876 242 TYLVLDEADRMLDMG--FEPQIKK--ILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD 317 (498)
Q Consensus 242 ~~vI~DE~h~~~~~~--~~~~~~~--i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (498)
++|||||||++.+++ |.+.+.. ++....+..++++||||+++.+...+..++..+....+.... ...++...+.
T Consensus 167 ~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~--~r~nl~~~v~ 244 (591)
T 2v1x_A 167 TRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF--NRPNLYYEVR 244 (591)
T ss_dssp EEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC--CCTTEEEEEE
T ss_pred cEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC--CCcccEEEEE
Confidence 999999999999887 7666654 344445689999999999999888777777654333332221 1222332222
Q ss_pred ec--chhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 010876 318 IV--SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 395 (498)
Q Consensus 318 ~~--~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT 395 (498)
.. ....+...+.+++.....+.++||||++++.|+.+++.|+..++.+..+||+|++.+|..+++.|++|+.+|||||
T Consensus 245 ~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT 324 (591)
T 2v1x_A 245 QKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 324 (591)
T ss_dssp ECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEEC
T ss_pred eCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 22 2345666777777665567799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHH
Q 010876 396 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 454 (498)
Q Consensus 396 ~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 454 (498)
+++++|||+|++++||++++|.|++.|+||+||+||.|++|.|++|+++.|...+..++
T Consensus 325 ~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 325 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp TTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred chhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988776655544
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-53 Score=439.91 Aligned_cols=370 Identities=29% Similarity=0.474 Sum_probs=261.4
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 010876 87 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 164 (498)
Q Consensus 87 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 164 (498)
+.|.+...|...++++.+.+.+.+.++..|+++|.++++.++++ +++++++|||||||++|+++++..+... .
T Consensus 113 ~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-----~ 187 (508)
T 3fho_A 113 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-----V 187 (508)
T ss_dssp --------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----C
T ss_pred ccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----C
Confidence 34555666777789999999999999999999999999999998 8999999999999999999999887553 2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEE
Q 010876 165 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 244 (498)
Q Consensus 165 ~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~v 244 (498)
.++++||++|+++|+.|+.+.+.+++....+.+...+++.... .....++|+|+||++|.+.+......+.++++|
T Consensus 188 ~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lI 263 (508)
T 3fho_A 188 PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVF 263 (508)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCEE
Confidence 3568999999999999999999999887777766655554322 223368999999999999998888788999999
Q ss_pred Eeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhh
Q 010876 245 VLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQ 323 (498)
Q Consensus 245 I~DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (498)
|+||||++.+ .++...+..+...+++..|++++|||+++.+..+...+..++..+.+......................
T Consensus 264 IiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 343 (508)
T 3fho_A 264 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEH 343 (508)
T ss_dssp EECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHH
T ss_pred EEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHH
Confidence 9999999987 678899999999999999999999999999999999999888777655544332222222333334556
Q ss_pred hHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCC
Q 010876 324 KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 403 (498)
Q Consensus 324 k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gld 403 (498)
+...+..++... ..+++||||+++.+|+.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|
T Consensus 344 k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiD 422 (508)
T 3fho_A 344 KYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGID 422 (508)
T ss_dssp HHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CC
T ss_pred HHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCC
Confidence 777777776654 4569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCC------CChhHHHHhhcccccCCCcceEEEEecc-ccHHHHHHHHHHHHHhCCCCCH
Q 010876 404 VKDVKYVINYDFP------GSLEDYVHRIGRTGRAGAKGTAYTFFTA-ANARFAKELITILEEAGQKVSP 466 (498)
Q Consensus 404 i~~v~~VI~~~~p------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~ 466 (498)
+|++++||+++.| .|+..|+||+||+||.|+.|.+++|++. .+...+..+.+.+......+|.
T Consensus 423 ip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 423 VSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp CTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred ccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 9999999999999 7899999999999999999999999985 4566677777776666665554
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.1e-50 Score=418.82 Aligned_cols=341 Identities=20% Similarity=0.335 Sum_probs=275.8
Q ss_pred CCcccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010876 93 KSFRDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 171 (498)
Q Consensus 93 ~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlv 171 (498)
.+|+++++++.+.+.+++ .|+..|+|+|.++++.+++++++++++|||+|||++|++|++.. ...+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 578999999999999998 89999999999999999999999999999999999999998743 356999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH---HH-HhcCCcEEEcChHHHHHHHhccCcccccccEEEec
Q 010876 172 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RD-LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 247 (498)
Q Consensus 172 l~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~D 247 (498)
|+|+++|+.|+.+.+.++ ++.+..+.++....... .. .....+|+|+||++|............++++||+|
T Consensus 71 i~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred ECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 999999999999999986 36677777776544332 22 23458999999999853222222334688999999
Q ss_pred cchhhhcCC--cHHHHHHH---HHhcCCCCcEEEEcCCCcHHHHHHHHHHh-cCCeEEEEcCCCcccccceeeeEeecch
Q 010876 248 EADRMLDMG--FEPQIKKI---LSQIRPDRQTLYWSATWPKEVEHLARQYL-YNPYKVIIGSPDLKANHAIRQHVDIVSE 321 (498)
Q Consensus 248 E~h~~~~~~--~~~~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (498)
|||++.+++ |.+.+..+ ...+ +..+++++|||+++.+.......+ .....+...... ..++. +.+...
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~~l~--~~v~~~ 220 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD---RPNIR--YMLMEK 220 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC---CTTEE--EEEEEC
T ss_pred CccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC---CCceE--EEEEeC
Confidence 999999876 66655543 3334 578999999999987765444333 232233333221 22222 233344
Q ss_pred hhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q 010876 322 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 401 (498)
Q Consensus 322 ~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 401 (498)
..+...+.+++... .+.++||||+++++++.+++.|+..++.+..+||++++++|..+++.|++|+.+|||||+++++|
T Consensus 221 ~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~G 299 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299 (523)
T ss_dssp SSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTT
T ss_pred CCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCC
Confidence 56677788887764 55689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHH
Q 010876 402 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 455 (498)
Q Consensus 402 ldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 455 (498)
||+|++++||++++|.|++.|+||+||+||.|++|.|++|+++.|....+.++.
T Consensus 300 iD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999888766655544
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.6e-50 Score=404.57 Aligned_cols=326 Identities=24% Similarity=0.300 Sum_probs=264.0
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH
Q 010876 104 VMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 183 (498)
Q Consensus 104 ~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~ 183 (498)
+.+.+++....+|+|+|.++++.+++++++++++|||+|||++|++|++..+. .++++||++|+++|+.|++
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~--------~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc--------CCCEEEEEECCHHHHHHHH
Confidence 34445543334899999999999999999999999999999999998887653 2678999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCCC---chhHHHHhcC-CcEEEcChHHHHHHHhccCcccccccEEEeccchhhhc-----
Q 010876 184 QESTKFGASSKIKSTCIYGGVPK---GPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD----- 254 (498)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~----- 254 (498)
+.+.+++. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. ..+.++++||+||||++.+
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchh
Confidence 99999987 78999999999877 4455666665 89999999999887764 5567899999999987654
Q ss_pred ------CCcHHH-HHHHHHhcC-----------CCCcEEEEcCC-CcHHHH-HHHHHHhcCCeEEEEcCCCcccccceee
Q 010876 255 ------MGFEPQ-IKKILSQIR-----------PDRQTLYWSAT-WPKEVE-HLARQYLYNPYKVIIGSPDLKANHAIRQ 314 (498)
Q Consensus 255 ------~~~~~~-~~~i~~~~~-----------~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (498)
++|... +..++..++ +..|++++||| +|..+. .+...++. +.+... ......+.+
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~i~~ 233 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL-VSVARNITH 233 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCC-CCCCCSEEE
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcc-ccccccchh
Confidence 667777 788887776 78999999999 565544 33333332 111111 122334555
Q ss_pred eEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeE-EecCCCCHHHHHHHHHHHhcCCCcEEE
Q 010876 315 HVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL-SIHGDKSQAERDWVLSEFKAGKSPIMT 393 (498)
Q Consensus 315 ~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~-~lh~~~~~~~r~~~~~~f~~g~~~vLv 393 (498)
.+... ++...+.+++... +.++||||+++.+|+.+++.|+..++.+. .+||. +|+ ++.|++|+++|||
T Consensus 234 ~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLv 302 (414)
T 3oiy_A 234 VRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILI 302 (414)
T ss_dssp EEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEE
T ss_pred eeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEE
Confidence 44443 4566677777773 47899999999999999999999999998 99994 444 9999999999999
Q ss_pred E----eccccccCCCCC-CCEEEEcCCC--CChhHHHHhhcccccCC----CcceEEEEeccccHHHHHHHHHHHH
Q 010876 394 A----TDVAARGLDVKD-VKYVINYDFP--GSLEDYVHRIGRTGRAG----AKGTAYTFFTAANARFAKELITILE 458 (498)
Q Consensus 394 a----T~~~~~Gldi~~-v~~VI~~~~p--~s~~~~~Qr~GR~~R~g----~~g~~~~~~~~~~~~~~~~l~~~l~ 458 (498)
| |+++++|+|+|+ +++||++++| .++.+|+||+||+||.| ..|.+++|+ .+...+..+.+.+.
T Consensus 303 at~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 303 GVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9 999999999999 9999999999 99999999999999988 479999998 67777888888777
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=5e-47 Score=408.29 Aligned_cols=337 Identities=21% Similarity=0.249 Sum_probs=266.0
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 170 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 170 (498)
..+|+++++++.+.+.+...||.+|+|+|.++++. +.+++++++++|||||||++|.++++..+... +.+++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 35799999999999999999999999999999999 77899999999999999999999999887742 57899
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccch
Q 010876 171 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 250 (498)
Q Consensus 171 vl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h 250 (498)
|++|+++||.|+++.++++. ..++++..++|+....... ...++|+|+||++|..++.+....+.++++||+||+|
T Consensus 80 ~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 99999999999999997654 3478888888877654431 2368999999999999888876668999999999999
Q ss_pred hhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccce--------eeeEeecc--
Q 010876 251 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAI--------RQHVDIVS-- 320 (498)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-- 320 (498)
.+.+..++..++.++..++ +.++++||||+++ ...+...+. .+. +............+ ...+....
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~-~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 231 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLG-AEP-VATNWRPVPLIEGVIYPERKKKEYNVIFKDNT 231 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHT-CEE-EECCCCSSCEEEEEEEECSSTTEEEEEETTSC
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhC-CCc-cCCCCCCCCceEEEEecCCcccceeeecCcch
Confidence 9998888999999888876 8999999999986 455555443 221 11110000000000 00011111
Q ss_pred ------hhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCC--------------------------------
Q 010876 321 ------ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG-------------------------------- 362 (498)
Q Consensus 321 ------~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~-------------------------------- 362 (498)
...+...+.+.+ ..++++||||+++++++.++..|....
T Consensus 232 ~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 308 (715)
T 2va8_A 232 TKKVHGDDAIIAYTLDSL---SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLK 308 (715)
T ss_dssp EEEEESSSHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHH---hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHH
Confidence 123333333333 356799999999999999999997642
Q ss_pred ----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEE----cC-------CCCChhHHHHhhc
Q 010876 363 ----WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD-------FPGSLEDYVHRIG 427 (498)
Q Consensus 363 ----~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~-------~p~s~~~~~Qr~G 427 (498)
..+..+||++++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|.||+|
T Consensus 309 ~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~G 388 (715)
T 2va8_A 309 SLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSG 388 (715)
T ss_dssp HHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHT
T ss_pred HHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhh
Confidence 24889999999999999999999999999999999999999999999999 88 7999999999999
Q ss_pred ccccCCC--cceEEEEecccc
Q 010876 428 RTGRAGA--KGTAYTFFTAAN 446 (498)
Q Consensus 428 R~~R~g~--~g~~~~~~~~~~ 446 (498)
||||.|. .|.|++++++.+
T Consensus 389 RaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 389 RAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp TBCCTTTCSCEEEEEECSCGG
T ss_pred hcCCCCCCCCceEEEEeCCch
Confidence 9999884 699999998765
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=8.6e-48 Score=414.10 Aligned_cols=332 Identities=19% Similarity=0.226 Sum_probs=270.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010876 94 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 172 (498)
Q Consensus 94 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl 172 (498)
+|+++++|+.+.+.+++.||.+|+|+|.++++. +.+++++++++|||||||++|.+|++..+... +.+++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 589999999999999999999999999999998 88899999999999999999999999887742 5789999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhh
Q 010876 173 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 252 (498)
Q Consensus 173 ~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~ 252 (498)
+|+++|+.|+++.++++.. .++++..++|+...... ....++|+|+||++|..++.+....+.++++||+||+|++
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999976654 47889999987665433 1346899999999999988876666889999999999999
Q ss_pred hcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeee------Eeecc-----h
Q 010876 253 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQH------VDIVS-----E 321 (498)
Q Consensus 253 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~ 321 (498)
.++.+...++.++..++++.|+++||||+++ ..++...+ ..+. +. .... ...+... +.... .
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~-~~~r---p~~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL-NAEL-IV-SDWR---PVKLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT-TEEE-EE-CCCC---SSEEEEEEEETTEEEETTSCEEEC
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh-CCcc-cC-CCCC---CCcceEEEEeCCeeeccccchhhh
Confidence 9988999999999888778999999999986 45555443 2211 11 1100 0011111 11111 2
Q ss_pred hhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC---------------------------------CCCeEEe
Q 010876 322 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---------------------------------GWPALSI 368 (498)
Q Consensus 322 ~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~---------------------------------~~~~~~l 368 (498)
..+...+.+.+ .+++++||||+++++|+.++..|.+. ...+..+
T Consensus 224 ~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 224 SSWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp SSTTHHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred hHHHHHHHHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 23334444443 34679999999999999999998752 1248899
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEE----cC----CCCChhHHHHhhcccccCC--CcceE
Q 010876 369 HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD----FPGSLEDYVHRIGRTGRAG--AKGTA 438 (498)
Q Consensus 369 h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~----~p~s~~~~~Qr~GR~~R~g--~~g~~ 438 (498)
||++++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|
T Consensus 301 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 380 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEG 380 (720)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEE
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999998 66 5889999999999999998 46899
Q ss_pred EEEecccc
Q 010876 439 YTFFTAAN 446 (498)
Q Consensus 439 ~~~~~~~~ 446 (498)
++++++.+
T Consensus 381 ~~l~~~~~ 388 (720)
T 2zj8_A 381 IIVSTSDD 388 (720)
T ss_dssp EEECSSSC
T ss_pred EEEecCcc
Confidence 99998876
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=5.4e-48 Score=415.58 Aligned_cols=343 Identities=22% Similarity=0.310 Sum_probs=229.9
Q ss_pred HHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 010876 106 QEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 185 (498)
Q Consensus 106 ~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~ 185 (498)
..+...|+.+|+++|.++++.++.++++|+++|||+|||++|++|++.++...+ ...+.++|||+|+++|+.|+.+.
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 445668899999999999999999999999999999999999999998887642 12236799999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCc-ccccccEEEeccchhhhcCC-cHHHHHH
Q 010876 186 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG-FEPQIKK 263 (498)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~-~l~~~~~vI~DE~h~~~~~~-~~~~~~~ 263 (498)
+.++....++++..++|+.....+...+..+.+|+|+||++|.+.+..... .+.++++|||||||++.+.. +...+..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999998888999999999877777777777899999999999999988766 68899999999999988654 2222222
Q ss_pred HHHh-----cCCCCcEEEEcCCCc-------HH-HHHHHHH---------------------HhcCCeEEEEcCCCcccc
Q 010876 264 ILSQ-----IRPDRQTLYWSATWP-------KE-VEHLARQ---------------------YLYNPYKVIIGSPDLKAN 309 (498)
Q Consensus 264 i~~~-----~~~~~~~i~~SAT~~-------~~-~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 309 (498)
.+.. ..+.+++++||||+. .+ ...+... +...|.............
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 3322 246789999999986 12 2222111 111122111100000000
Q ss_pred --------------------------------------------------------------------------------
Q 010876 310 -------------------------------------------------------------------------------- 309 (498)
Q Consensus 310 -------------------------------------------------------------------------------- 309 (498)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred ------------------------------cceeeeEe----------------ecchhhhHHHHHHHHHhhc---CCCe
Q 010876 310 ------------------------------HAIRQHVD----------------IVSESQKYNKLVKLLEDIM---DGSR 340 (498)
Q Consensus 310 ------------------------------~~~~~~~~----------------~~~~~~k~~~l~~~l~~~~---~~~~ 340 (498)
..+.+.+. ......|...|.+++.... ++.+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 00000000 0013456777777777652 4568
Q ss_pred EEEEeCCcccHHHHHHHHhhCC----CCeEEe--------cCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCCCCCC
Q 010876 341 ILIFMDTKKGCDQITRQLRMDG----WPALSI--------HGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDV 407 (498)
Q Consensus 341 vlIf~~s~~~~~~l~~~L~~~~----~~~~~l--------h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v 407 (498)
+||||+++.+++.+++.|+..+ +++..+ |++|++.+|..+++.|++ |+++|||||+++++|||+|++
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999887 888888 559999999999999998 999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHH
Q 010876 408 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 453 (498)
Q Consensus 408 ~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 453 (498)
++||+||+|+|+..|+||+|| ||. +.|.++++++..+......+
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp SEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999 998 78999999998766444333
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.3e-47 Score=402.36 Aligned_cols=331 Identities=21% Similarity=0.256 Sum_probs=207.1
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 010876 112 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 191 (498)
Q Consensus 112 ~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~ 191 (498)
+..+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+|+++|+.||.+.+.++..
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 345899999999999999999999999999999999999998887643 12267799999999999999999999988
Q ss_pred CCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCc-ccccccEEEeccchhhhcCCcHHHH-HHHHHh-c
Q 010876 192 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGFEPQI-KKILSQ-I 268 (498)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~-~l~~~~~vI~DE~h~~~~~~~~~~~-~~i~~~-~ 268 (498)
..++.+..++|+.........+..+++|+|+||++|.+++..... .+.++++||+||||++.+++....+ ...+.. +
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 160 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhh
Confidence 778999999999877777777777899999999999999988776 7899999999999999887643332 222222 1
Q ss_pred ---CCCCcEEEEcCCCcH-----------HHHHHHHHH------------------hcCCeEEEEcCCC-cccc------
Q 010876 269 ---RPDRQTLYWSATWPK-----------EVEHLARQY------------------LYNPYKVIIGSPD-LKAN------ 309 (498)
Q Consensus 269 ---~~~~~~i~~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~-~~~~------ 309 (498)
.+..++++||||++. .+..+...+ ...+......... ....
T Consensus 161 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 356899999999842 122222221 1111111111100 0000
Q ss_pred ---cc---------------------ee-----eeE--------------------------------------------
Q 010876 310 ---HA---------------------IR-----QHV-------------------------------------------- 316 (498)
Q Consensus 310 ---~~---------------------~~-----~~~-------------------------------------------- 316 (498)
.. .. +.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00 00 000
Q ss_pred ---------------------------------------------eecchhhhHHHHHHHHHhh---cCCCeEEEEeCCc
Q 010876 317 ---------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDTK 348 (498)
Q Consensus 317 ---------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~vlIf~~s~ 348 (498)
.......|...|.++|.+. ..+.++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 0000144666677777654 4567999999999
Q ss_pred ccHHHHHHHHhhC------------CCCeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCCCCCCCEEEEcCC
Q 010876 349 KGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYDF 415 (498)
Q Consensus 349 ~~~~~l~~~L~~~------------~~~~~~lh~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v~~VI~~~~ 415 (498)
.+++.+++.|+.. |.....+||++++.+|..+++.|++ |+++|||||+++++|||+|++++||+||+
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999875 4455566888999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 416 PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 416 p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 481 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 481 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp CSCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 9999999999999 999 88999999998754
No 23
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.6e-47 Score=410.85 Aligned_cols=332 Identities=18% Similarity=0.273 Sum_probs=264.5
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010876 94 SFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 171 (498)
Q Consensus 94 ~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlv 171 (498)
+|++++ +++.+.+.+++.||.+|+|+|.++++.+++++++++++|||||||++|.++++..+.. +.+++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577888 9999999999999999999999999999999999999999999999999999988764 467999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh
Q 010876 172 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 251 (498)
Q Consensus 172 l~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~ 251 (498)
++|+++||.|+++.++++. ..++++..++|+...... ....++|+|+||++|..++.+....+.++++||+||+|.
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999997654 447889888887765432 123689999999999998888766688999999999999
Q ss_pred hhcCCcHHHHHHHHHhc---CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeE------eecchh
Q 010876 252 MLDMGFEPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV------DIVSES 322 (498)
Q Consensus 252 ~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 322 (498)
+.++++...++.++..+ .++.|+++||||+++ ..++...+ ..+. +...... ..+...+ ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r~----~~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DADY-YVSDWRP----VPLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TCEE-EECCCCS----SCEEEEEECSSEEEEEETT
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CCCc-ccCCCCC----ccceEEEeeCCeeeccCcc
Confidence 99988888888877665 578999999999986 55555543 3222 1111110 0111110 111111
Q ss_pred -------hhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC------------------------------CCCe
Q 010876 323 -------QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------------------GWPA 365 (498)
Q Consensus 323 -------~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~------------------------------~~~~ 365 (498)
.+...+.+.+ .+++++||||+++++++.++..|... +..+
T Consensus 223 ~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v 299 (702)
T 2p6r_A 223 FSTSRRVKFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGA 299 (702)
T ss_dssp EEEEEECCHHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTC
T ss_pred hhhhhhhhHHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCe
Confidence 1344444443 35679999999999999999988642 1357
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEE----cC---CCCChhHHHHhhcccccCCC--cc
Q 010876 366 LSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD---FPGSLEDYVHRIGRTGRAGA--KG 436 (498)
Q Consensus 366 ~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~---~p~s~~~~~Qr~GR~~R~g~--~g 436 (498)
..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.|. .|
T Consensus 300 ~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G 379 (702)
T 2p6r_A 300 AFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERG 379 (702)
T ss_dssp CEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCE
T ss_pred EEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCc
Confidence 88999999999999999999999999999999999999999999998 66 68899999999999999984 69
Q ss_pred eEEEEeccccH
Q 010876 437 TAYTFFTAANA 447 (498)
Q Consensus 437 ~~~~~~~~~~~ 447 (498)
.|++++++.+.
T Consensus 380 ~~~~l~~~~~~ 390 (702)
T 2p6r_A 380 EAIIIVGKRDR 390 (702)
T ss_dssp EEEEECCGGGH
T ss_pred eEEEEecCccH
Confidence 99999988763
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-47 Score=418.72 Aligned_cols=329 Identities=16% Similarity=0.205 Sum_probs=262.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010876 94 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 173 (498)
Q Consensus 94 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~ 173 (498)
.|..+++++.+...+.....+.|+++|.++++.++.+++++++||||||||++|++|++..+.. +.++||++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEc
Confidence 4566667666666666677789999999999999999999999999999999999999988754 67899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhh
Q 010876 174 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 253 (498)
Q Consensus 174 P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~ 253 (498)
|+++|++|+++.+.++.. .+..++|+... ...++|+|+||++|.+++......+.++++|||||||++.
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTT
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcc
Confidence 999999999999998765 46667777654 3458999999999999998887778999999999999999
Q ss_pred cCCcHHHHHHHHHhcCCCCcEEEEcCCCcHH--HHHHHHHHhcCCeEEEEcCCCcccccceeeeEe---------ecch-
Q 010876 254 DMGFEPQIKKILSQIRPDRQTLYWSATWPKE--VEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD---------IVSE- 321 (498)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~- 321 (498)
+++|+..++.++..+++..|+++||||+|+. +..++......+..+........ .+.+++. .+..
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~---pl~~~~~~~~~~~~~~~vd~~ 380 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT---PLQHYLFPAHGDGIYLVVDEK 380 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSS---CEEEEEEETTSSCCEEEEETT
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc---cceEEEeecCCcceeeeeccc
Confidence 9999999999999999999999999999764 44556666666655544332211 1111111 0000
Q ss_pred ---------------------------------------------hhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHH
Q 010876 322 ---------------------------------------------SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITR 356 (498)
Q Consensus 322 ---------------------------------------------~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~ 356 (498)
..+...++..+... ...++||||+++..|+.++.
T Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~-~~~~vIVF~~sr~~~e~la~ 459 (1108)
T 3l9o_A 381 STFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELAL 459 (1108)
T ss_dssp TEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc-CCCCEEEEeCcHHHHHHHHH
Confidence 12222233333332 34589999999999999999
Q ss_pred HHhhCCCC---------------------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 010876 357 QLRMDGWP---------------------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 397 (498)
Q Consensus 357 ~L~~~~~~---------------------------------------~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 397 (498)
.|...++. +..+||+|++.+|..+++.|++|.++|||||++
T Consensus 460 ~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~v 539 (1108)
T 3l9o_A 460 KMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATET 539 (1108)
T ss_dssp HTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESC
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcH
Confidence 98653222 689999999999999999999999999999999
Q ss_pred ccccCCCCCCCEEEEcCCC--------CChhHHHHhhcccccCC--CcceEEEEeccc
Q 010876 398 AARGLDVKDVKYVINYDFP--------GSLEDYVHRIGRTGRAG--AKGTAYTFFTAA 445 (498)
Q Consensus 398 ~~~Gldi~~v~~VI~~~~p--------~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~ 445 (498)
+++|||+|++++||+++.| .|+.+|+||+|||||.| ..|.|++++++.
T Consensus 540 la~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 540 FSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999999987764 36778999999999999 578888888765
No 25
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.5e-46 Score=391.71 Aligned_cols=380 Identities=18% Similarity=0.234 Sum_probs=286.5
Q ss_pred CCCCCCCcccccccccCccccCCCHHHHHHHHHhcCceE-ecCCCCCCcCCcccCCCCHHHH---H-HHHHCCCCCCcHH
Q 010876 45 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVM---Q-EISKAGFFEPTPI 119 (498)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~-~~~~~~~~~~~f~~~~l~~~~~---~-~l~~~~~~~~~~~ 119 (498)
+....+.+.-+......+.+..+|++++.....+....+ .+. +++++ +++.+. + .....|+ .|+|+
T Consensus 17 r~~k~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~-------~ld~~-l~ea~a~vrea~~r~lG~-~pt~V 87 (844)
T 1tf5_A 17 RTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGA-------TTDDL-LVEAFAVVREASRRVTGM-FPFKV 87 (844)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTC-------CHHHH-HHHHHHHHHHHHHHHHSC-CCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCC-------ChHHH-HHHHHHHHHHHHHHHcCC-CCcHH
Confidence 344456666677788889999999999976655532222 121 12221 222211 0 1114799 99999
Q ss_pred HHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEE
Q 010876 120 QAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTC 199 (498)
Q Consensus 120 Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~ 199 (498)
|..+++.+++|+ |+.++||+|||++|.+|++.+.+. ++.++||+||++||.|.++++..++..+++++.+
T Consensus 88 Q~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~ 157 (844)
T 1tf5_A 88 QLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGL 157 (844)
T ss_dssp HHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 999999999998 999999999999999999865543 5679999999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHhcCCcEEEcChHHH-HHHHhcc------CcccccccEEEeccchhhh-cCC---------------
Q 010876 200 IYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DMG--------------- 256 (498)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-~~~l~~~------~~~l~~~~~vI~DE~h~~~-~~~--------------- 256 (498)
++||.+.. .+....+++|+|+||++| .+++... ...++.+.++|+||||+|+ ++.
T Consensus 158 i~gg~~~~--~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~ 235 (844)
T 1tf5_A 158 NLNSMSKD--EKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTK 235 (844)
T ss_dssp CCTTSCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCH
T ss_pred EeCCCCHH--HHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchh
Confidence 99998643 344455789999999999 6665432 3567889999999999998 653
Q ss_pred cHHHHHHHHHhcC---------CCCcEE-----------------EEcCCCcH---HHHHHHH--HHhc-CCeEE-----
Q 010876 257 FEPQIKKILSQIR---------PDRQTL-----------------YWSATWPK---EVEHLAR--QYLY-NPYKV----- 299 (498)
Q Consensus 257 ~~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~---~~~~~~~--~~~~-~~~~~----- 299 (498)
|...+..++..++ +.+|++ ++|||.+. .+...++ .++. +...+
T Consensus 236 ~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~ 315 (844)
T 1tf5_A 236 LYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQ 315 (844)
T ss_dssp HHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTE
T ss_pred HHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCe
Confidence 6788999999886 367887 89999764 3333221 2221 11111
Q ss_pred --EEcC-----------------------------CCc------------------------------------------
Q 010876 300 --IIGS-----------------------------PDL------------------------------------------ 306 (498)
Q Consensus 300 --~~~~-----------------------------~~~------------------------------------------ 306 (498)
.+.. ...
T Consensus 316 v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~I 395 (844)
T 1tf5_A 316 VVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTI 395 (844)
T ss_dssp EEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEEC
T ss_pred eEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEe
Confidence 0000 000
Q ss_pred cccc---ce-eeeEeecchhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHH
Q 010876 307 KANH---AI-RQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVL 381 (498)
Q Consensus 307 ~~~~---~~-~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~ 381 (498)
..+. .. ...+..+...+|...+.+.+.+. ..+.++||||+|+..++.|+..|+..|+++..+||++.+.+|..+.
T Consensus 396 Ptn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~ 475 (844)
T 1tf5_A 396 PTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIE 475 (844)
T ss_dssp CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHT
T ss_pred cCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHH
Confidence 0000 00 01133456778899898888764 3566899999999999999999999999999999999888887666
Q ss_pred HHHhcCCCcEEEEeccccccCCCC--------CCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 382 SEFKAGKSPIMTATDVAARGLDVK--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 382 ~~f~~g~~~vLvaT~~~~~Gldi~--------~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
..|+.| .|+|||++++||+||+ ++.+||+++.|.|...|+||+||+||.|.+|.+++|++..|.
T Consensus 476 ~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 476 EAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 666654 6999999999999999 788999999999999999999999999999999999997763
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.1e-46 Score=395.11 Aligned_cols=335 Identities=21% Similarity=0.303 Sum_probs=235.8
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
.+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+|+++|+.||.+.+.++....
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4899999999999999999999999999999999999998887643 1236679999999999999999999998888
Q ss_pred CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCc-ccccccEEEeccchhhhcCC-cHHHHHHHHHhc---
Q 010876 194 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI--- 268 (498)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~-~l~~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~--- 268 (498)
++.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++||+||||++.+.+ +...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 8999999999977777777777899999999999999988766 78899999999999998875 333333333332
Q ss_pred --CCCCcEEEEcCCCcHH-----------HHHHHHHHh------------------cCCeEEEEcCCC-cccc-c-----
Q 010876 269 --RPDRQTLYWSATWPKE-----------VEHLARQYL------------------YNPYKVIIGSPD-LKAN-H----- 310 (498)
Q Consensus 269 --~~~~~~i~~SAT~~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~-~~~~-~----- 310 (498)
.+..++++||||++.. +..+...+. ..+......... .... .
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQ 239 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHH
Confidence 2567999999998531 112211111 111111100000 0000 0
Q ss_pred ------ce-e-----------------------eeE--------------------------------------------
Q 010876 311 ------AI-R-----------------------QHV-------------------------------------------- 316 (498)
Q Consensus 311 ------~~-~-----------------------~~~-------------------------------------------- 316 (498)
.. . +.+
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (555)
T 3tbk_A 240 LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISED 319 (555)
T ss_dssp HHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 00 0 000
Q ss_pred ---------------------------------------------eecchhhhHHHHHHHHHhh---cCCCeEEEEeCCc
Q 010876 317 ---------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDTK 348 (498)
Q Consensus 317 ---------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~vlIf~~s~ 348 (498)
.......|...+.++|... ....++||||+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~ 399 (555)
T 3tbk_A 320 AQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTR 399 (555)
T ss_dssp SCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSH
T ss_pred hhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcH
Confidence 0001134666666666654 2457999999999
Q ss_pred ccHHHHHHHHhhCC----C--------CeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCCCCCCCEEEEcCC
Q 010876 349 KGCDQITRQLRMDG----W--------PALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYDF 415 (498)
Q Consensus 349 ~~~~~l~~~L~~~~----~--------~~~~lh~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v~~VI~~~~ 415 (498)
.+++.++..|+..+ + ....+||+|++.+|..+++.|++ |+++|||||+++++|+|+|++++||+||+
T Consensus 400 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 400 ALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY 479 (555)
T ss_dssp HHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESC
T ss_pred HHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC
Confidence 99999999998763 3 34455669999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHH
Q 010876 416 PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 453 (498)
Q Consensus 416 p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 453 (498)
|+|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 480 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 480 VGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999999 998 89999999998766544433
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=9.6e-46 Score=401.94 Aligned_cols=332 Identities=20% Similarity=0.239 Sum_probs=214.0
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 111 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 111 ~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.++..|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+|+++|+.|+.+.+.++.
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 5678999999999999999999999999999999999999998887642 1236679999999999999999999998
Q ss_pred CCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCc-ccccccEEEeccchhhhcCCcH-HHHHHHHHh-
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGFE-PQIKKILSQ- 267 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~-~l~~~~~vI~DE~h~~~~~~~~-~~~~~i~~~- 267 (498)
...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++|||||||++.+.... ..+..++..
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8778999999999987777777778899999999999999988766 7889999999999999876532 222233322
Q ss_pred ---cCCCCcEEEEcCCCcH-----------HHHHHHHHH------------------hcCCeEEEEcCCC-cccc-c---
Q 010876 268 ---IRPDRQTLYWSATWPK-----------EVEHLARQY------------------LYNPYKVIIGSPD-LKAN-H--- 310 (498)
Q Consensus 268 ---~~~~~~~i~~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~-~~~~-~--- 310 (498)
..+.+++++||||++. .+..+...+ ...+......... .... .
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 1567899999999852 222222211 1111111110000 0000 0
Q ss_pred ------------c---------ee----------eeEe------------------------------------------
Q 010876 311 ------------A---------IR----------QHVD------------------------------------------ 317 (498)
Q Consensus 311 ------------~---------~~----------~~~~------------------------------------------ 317 (498)
. +. +.+.
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0 00 0000
Q ss_pred -----------------------------------------------ecchhhhHHHHHHHHHhh---cCCCeEEEEeCC
Q 010876 318 -----------------------------------------------IVSESQKYNKLVKLLEDI---MDGSRILIFMDT 347 (498)
Q Consensus 318 -----------------------------------------------~~~~~~k~~~l~~~l~~~---~~~~~vlIf~~s 347 (498)
......|...|.++|... ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 000134566666666652 345799999999
Q ss_pred cccHHHHHHHHhhC------------CCCeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCCCCCCCEEEEcC
Q 010876 348 KKGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYD 414 (498)
Q Consensus 348 ~~~~~~l~~~L~~~------------~~~~~~lh~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v~~VI~~~ 414 (498)
+..++.+++.|+.. |.....+||++++.+|..+++.|++ |+++|||||+++++|||+|++++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999763 4556677899999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 415 FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 415 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
+|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999 999 89999999988654
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.7e-45 Score=406.77 Aligned_cols=321 Identities=23% Similarity=0.284 Sum_probs=260.6
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 111 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 111 ~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.+| +|+|+|.++++.++.+++++++||||||||++|+++++..+. .++++|||+||++||.|+++.+.+++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~--------~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh--------cCCeEEEEechHHHHHHHHHHHHHhh
Confidence 566 799999999999999999999999999999988888777663 26789999999999999999999987
Q ss_pred CCCCceEEEEeCCCCC---chhHHHHhcC-CcEEEcChHHHHHHHhccCcccccccEEEeccchhhh----------c-C
Q 010876 191 ASSKIKSTCIYGGVPK---GPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML----------D-M 255 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~----------~-~ 255 (498)
..++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. ..+.++++|||||||++. + +
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 778999999999987 5556667665 99999999999888764 567789999999997654 4 7
Q ss_pred CcHHH-HHHHHHhcC-----------CCCcEEEEcCC-CcHHHH-HHHHHHhcCCeEEEEcCCCcccccceeeeEeecch
Q 010876 256 GFEPQ-IKKILSQIR-----------PDRQTLYWSAT-WPKEVE-HLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE 321 (498)
Q Consensus 256 ~~~~~-~~~i~~~~~-----------~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (498)
+|... +..++..++ ...|+++|||| .|..+. .+....+. +.+.... .....+.+.+..+
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~-- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS-- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC--
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec--
Confidence 77777 888888776 78999999999 565544 23333332 1111111 2334455555444
Q ss_pred hhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeE-EecCCCCHHHHHHHHHHHhcCCCcEEEE----ec
Q 010876 322 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL-SIHGDKSQAERDWVLSEFKAGKSPIMTA----TD 396 (498)
Q Consensus 322 ~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~-~lh~~~~~~~r~~~~~~f~~g~~~vLva----T~ 396 (498)
++...+..++... +.++||||+++..|+.++..|+..++.+. .+|| +|++ ++.|++|+++|||| |+
T Consensus 296 -~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 296 -RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp -CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred -CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCC
Confidence 4666777777773 47899999999999999999999999998 9999 2555 99999999999999 99
Q ss_pred cccccCCCCC-CCEEEEcCCCC----------------------------------------------------------
Q 010876 397 VAARGLDVKD-VKYVINYDFPG---------------------------------------------------------- 417 (498)
Q Consensus 397 ~~~~Gldi~~-v~~VI~~~~p~---------------------------------------------------------- 417 (498)
++++|||+|+ |++|||||+|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 99999999998
Q ss_pred --------------ChhHHHHhhcccccCCCcc--eEEEEeccccHHHHHHHHHHHHH
Q 010876 418 --------------SLEDYVHRIGRTGRAGAKG--TAYTFFTAANARFAKELITILEE 459 (498)
Q Consensus 418 --------------s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 459 (498)
++.+|+||+||+||.+..| .++.++..+|.+.+..|.+.++-
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLL 504 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhh
Confidence 7789999999999976432 34444445788888888888763
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-44 Score=395.26 Aligned_cols=318 Identities=18% Similarity=0.232 Sum_probs=254.0
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 010876 112 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 191 (498)
Q Consensus 112 ~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~ 191 (498)
+| +|+++|.++++.++.++++++++|||||||++|.++++..+.. +.++||++|+++|++|+++.+.++..
T Consensus 84 ~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 84 PF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHHhC
Confidence 44 6999999999999999999999999999999999988877653 67899999999999999999998765
Q ss_pred CCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCC
Q 010876 192 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPD 271 (498)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~ 271 (498)
.+..++|+.... ..++|+|+||++|.+++.+....+.++++|||||+|++.+++++..++.++..+++.
T Consensus 155 ----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 ----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp ----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred ----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 566777776542 357999999999999988877788999999999999999999999999999999999
Q ss_pred CcEEEEcCCCcHHHH--HHHHHHhcCCeEEEEcCCCcccccceeeeEee---------cch-------------------
Q 010876 272 RQTLYWSATWPKEVE--HLARQYLYNPYKVIIGSPDLKANHAIRQHVDI---------VSE------------------- 321 (498)
Q Consensus 272 ~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------------------- 321 (498)
.++++||||+++..+ .++......+..+....... ..+.+++.. +..
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS---SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc---ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 999999999987432 33333344455554433221 112221111 000
Q ss_pred ---------------------------hhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCC----------
Q 010876 322 ---------------------------SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP---------- 364 (498)
Q Consensus 322 ---------------------------~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~---------- 364 (498)
......++..+... ...++||||+++..|+.++..|...++.
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 379 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 379 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 11122233333322 3348999999999999999999775442
Q ss_pred -----------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEE---
Q 010876 365 -----------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN--- 412 (498)
Q Consensus 365 -----------------------------~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~--- 412 (498)
+..+||++++.+|+.+++.|++|.++|||||+++++|||+|++++||+
T Consensus 380 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~ 459 (1010)
T 2xgj_A 380 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 459 (1010)
T ss_dssp HHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSE
T ss_pred HHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCc
Confidence 678999999999999999999999999999999999999999999999
Q ss_pred -cCC----CCChhHHHHhhcccccCCCc--ceEEEEeccc-cHHHHHHH
Q 010876 413 -YDF----PGSLEDYVHRIGRTGRAGAK--GTAYTFFTAA-NARFAKEL 453 (498)
Q Consensus 413 -~~~----p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~-~~~~~~~l 453 (498)
||. |.|+.+|+||+||+||.|.+ |.|++++++. +...+..+
T Consensus 460 kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 460 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred ccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 998 89999999999999999974 9999999876 44444433
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-44 Score=372.02 Aligned_cols=323 Identities=22% Similarity=0.277 Sum_probs=253.0
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
+|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++|||+|+++|+.||.+++.++.....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 7999999999999999 99999999999999999988877662 256799999999999999999999875555
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcE
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 274 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~ 274 (498)
..+..++|+...... .......+|+|+||++|.+.+......+.++++||+||||++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 678888887765433 3334467999999999999888877788899999999999998765555566666666778999
Q ss_pred EEEcCCCcHH---HHHHHHHHhcCCeEEEEcCCC-ccc---ccceeeeE-------------------------------
Q 010876 275 LYWSATWPKE---VEHLARQYLYNPYKVIIGSPD-LKA---NHAIRQHV------------------------------- 316 (498)
Q Consensus 275 i~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~------------------------------- 316 (498)
++||||+... +..+...+............. ... ........
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999743 334443332221111100000 000 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 010876 317 -------------------------------------------------------------------------------- 316 (498)
Q Consensus 317 -------------------------------------------------------------------------------- 316 (498)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred -----------------eecchhhhHHHHHHHHHhh---cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecC------
Q 010876 317 -----------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG------ 370 (498)
Q Consensus 317 -----------------~~~~~~~k~~~l~~~l~~~---~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~------ 370 (498)
.......|...+.+++... ..+.++||||+++..++.+++.|+..++.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 0002334666677777765 35679999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 371 --DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 371 --~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
+++..+|..+++.|++|+++|||||+++++|+|+|++++||++|+|+|+..|+||+||+||.|+ |.++.|+++.+.
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999998753
No 31
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=9e-45 Score=398.25 Aligned_cols=332 Identities=20% Similarity=0.248 Sum_probs=213.3
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 111 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 111 ~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.++.+|+++|.++++.++.++++++++|||+|||++|++|++..+...+ ...+.++|||+|+++|+.|+++.+.++.
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 4677999999999999999999999999999999999999887776532 1225679999999999999999999998
Q ss_pred CCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCc-ccccccEEEeccchhhhcCCc-HHHHHHHHHh-
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGF-EPQIKKILSQ- 267 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~-~l~~~~~vI~DE~h~~~~~~~-~~~~~~i~~~- 267 (498)
...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++||+||||++.+... ...+..++..
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8888999999999877666666666789999999999999987766 688999999999999987652 2233333332
Q ss_pred ---cCCCCcEEEEcCCCcH-----------HHHHHHHH------------------HhcCCeEEEEcCCC-cccc-c---
Q 010876 268 ---IRPDRQTLYWSATWPK-----------EVEHLARQ------------------YLYNPYKVIIGSPD-LKAN-H--- 310 (498)
Q Consensus 268 ---~~~~~~~i~~SAT~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~-~~~~-~--- 310 (498)
..+.+++++||||+.. .+..+... +...+......... .... .
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 1466899999999842 22222211 11222221111110 0000 0
Q ss_pred ------------c---------ee----------eeEe------------------------------------------
Q 010876 311 ------------A---------IR----------QHVD------------------------------------------ 317 (498)
Q Consensus 311 ------------~---------~~----------~~~~------------------------------------------ 317 (498)
. +. +.+.
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0 00 0000
Q ss_pred -----------------------------------------------ecchhhhHHHHHHHHHhh---cCCCeEEEEeCC
Q 010876 318 -----------------------------------------------IVSESQKYNKLVKLLEDI---MDGSRILIFMDT 347 (498)
Q Consensus 318 -----------------------------------------------~~~~~~k~~~l~~~l~~~---~~~~~vlIf~~s 347 (498)
......|...|.++|.+. ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 000134555666666654 345799999999
Q ss_pred cccHHHHHHHHhhC------------CCCeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEeccccccCCCCCCCEEEEcC
Q 010876 348 KKGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYD 414 (498)
Q Consensus 348 ~~~~~~l~~~L~~~------------~~~~~~lh~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v~~VI~~~ 414 (498)
+..++.+++.|+.. |.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+||
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeC
Confidence 99999999999876 4455667899999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 415 FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 415 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
+|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999 999 88999999987644
No 32
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.2e-45 Score=404.92 Aligned_cols=320 Identities=20% Similarity=0.286 Sum_probs=258.3
Q ss_pred HCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 110 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 110 ~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
..||. | ++|.++|+.++.++++++++|||||||+ |.+|++.++.. .++++|||+||++||.|+++.+.++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 47888 9 9999999999999999999999999998 88888888765 3678999999999999999999999
Q ss_pred cCCCCc----eEEEEeCCCCCchh---HHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHH
Q 010876 190 GASSKI----KSTCIYGGVPKGPQ---VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK 262 (498)
Q Consensus 190 ~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~ 262 (498)
+...++ .+.+++|+.....+ ...+.. ++|+|+||++|.+++.+ +.++++||+||||++++ |...++
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHH
Confidence 988888 89999999887663 334455 89999999999987765 66899999999999998 467788
Q ss_pred HHHHhc-----------CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHH
Q 010876 263 KILSQI-----------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 331 (498)
Q Consensus 263 ~i~~~~-----------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 331 (498)
.++..+ +...|++++|||++.. ..+...++.++..+.+.... .....+.+.+. ...+...+..+
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~~l 270 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLSSI 270 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTHHH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHHHHH
Confidence 887766 3567899999999876 53333333333322222221 22233444333 35566667777
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEE----eccccccCCCCCC
Q 010876 332 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA----TDVAARGLDVKDV 407 (498)
Q Consensus 332 l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~Gldi~~v 407 (498)
+... +.++||||++++.|+.+++.|+.. +++..+||++. .+++.|++|+++|||| |+++++|||+|+|
T Consensus 271 l~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~V 342 (1054)
T 1gku_B 271 LEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPER 342 (1054)
T ss_dssp HTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTT
T ss_pred Hhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCc
Confidence 7664 568999999999999999999988 99999999984 6889999999999999 8999999999996
Q ss_pred -CEEEEcCCC----------------------------------------------------------------------
Q 010876 408 -KYVINYDFP---------------------------------------------------------------------- 416 (498)
Q Consensus 408 -~~VI~~~~p---------------------------------------------------------------------- 416 (498)
++||+++.|
T Consensus 343 I~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 422 (1054)
T 1gku_B 343 IRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVI 422 (1054)
T ss_dssp CCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEE
T ss_pred ccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeeccee
Confidence 999999999
Q ss_pred -CChhHHHHhhcccccCCCcc--eEEEEeccccHHHHHHHHHHHHH
Q 010876 417 -GSLEDYVHRIGRTGRAGAKG--TAYTFFTAANARFAKELITILEE 459 (498)
Q Consensus 417 -~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 459 (498)
.+..+|+||+||+||.|..| .+++|+..++...+..|.+.++.
T Consensus 423 ~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 423 FPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987776 48888888888888888888875
No 33
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.2e-45 Score=414.95 Aligned_cols=400 Identities=19% Similarity=0.261 Sum_probs=282.6
Q ss_pred CCCCCCCcccccccccCccccCCCHHHHHHHHHhcCceEecCCCCCCcCCcccC----CCCHHHHHHHHHCCCCCCcHHH
Q 010876 45 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQ 120 (498)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~~~~~~~~~~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q 120 (498)
.|++.+...+.+.++.+..+..+.......+..++++.+.. ..+.|....+++ .||++....+ .||.+|+++|
T Consensus 8 ~dl~~l~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~-~~~~~~~~~~~l~~i~~Lp~~~~~~f--~g~~~ln~iQ 84 (1724)
T 4f92_B 8 LDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPA-LKPKPFGSEEQLLPVEKLPKYAQAGF--EGFKTLNRIQ 84 (1724)
T ss_dssp CCHHHHSCTTGGGCCCCCCCCCCSCCCEEECSSEEEEEECC-CCCCCCCSSCCCCBTTTSCGGGSTTC--TTCSBCCHHH
T ss_pred ecHhhhccccccccccCCceeCCCCCeecccCCcceEecCC-CCCCCCCCcCCccchHhcCHHHHHhc--CCCCCCCHHH
Confidence 66666665555665555544433222222222334455422 223333333332 2555544433 3788999999
Q ss_pred HHHHHHhh-cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCC---CCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCce
Q 010876 121 AQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL---APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 196 (498)
Q Consensus 121 ~~~i~~~l-~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~---~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~ 196 (498)
.++++.++ +++|++++||||||||++|.++++..+...... ....+.++||++|+++||+|+++.+.+.....+++
T Consensus 85 s~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~ 164 (1724)
T 4f92_B 85 SKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGIT 164 (1724)
T ss_dssp HHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCE
Confidence 99999987 577999999999999999999999998764321 22357789999999999999999999888888999
Q ss_pred EEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccC--cccccccEEEeccchhhhcCCcHHHHHHHHHh-------
Q 010876 197 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ------- 267 (498)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~--~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~------- 267 (498)
|..++|+....... ...++|+|||||++..++.+.. ..++++++||+||+|.+.+ .++..++.++.+
T Consensus 165 V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~ 240 (1724)
T 4f92_B 165 VAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEM 240 (1724)
T ss_dssp EEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHh
Confidence 99999987654321 3468999999999855554432 2378899999999998766 577777766543
Q ss_pred cCCCCcEEEEcCCCcHHHHHHHHHHhcCCe--EEEEcCCCcccccceeeeEeecchh---hhH----HHHHHHHHhhcCC
Q 010876 268 IRPDRQTLYWSATWPKEVEHLARQYLYNPY--KVIIGSPDLKANHAIRQHVDIVSES---QKY----NKLVKLLEDIMDG 338 (498)
Q Consensus 268 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~k~----~~l~~~l~~~~~~ 338 (498)
.++..|+|+||||+|+ .+++++.+..++. ...+... ..+..+.+.+...... ... ..+.+.+.+...+
T Consensus 241 ~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 317 (1724)
T 4f92_B 241 TQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGK 317 (1724)
T ss_dssp HTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcC
Confidence 4678999999999986 6666665433321 1112111 1222333333222211 111 2233344444556
Q ss_pred CeEEEEeCCcccHHHHHHHHhhC-------------------------------------CCCeEEecCCCCHHHHHHHH
Q 010876 339 SRILIFMDTKKGCDQITRQLRMD-------------------------------------GWPALSIHGDKSQAERDWVL 381 (498)
Q Consensus 339 ~~vlIf~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~lh~~~~~~~r~~~~ 381 (498)
+++||||++++.|+.+++.|.+. ...+..+||+|++++|..++
T Consensus 318 ~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE 397 (1724)
T 4f92_B 318 NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVE 397 (1724)
T ss_dssp CCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHH
Confidence 79999999999999998887531 13477899999999999999
Q ss_pred HHHhcCCCcEEEEeccccccCCCCCCCEEEE----cCC------CCChhHHHHhhcccccCCC--cceEEEEeccccHHH
Q 010876 382 SEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YDF------PGSLEDYVHRIGRTGRAGA--KGTAYTFFTAANARF 449 (498)
Q Consensus 382 ~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~~------p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~~~~ 449 (498)
+.|++|.++|||||+++++|||+|.+++||. |+. |.++.+|.||+|||||.|. .|.++++..+++...
T Consensus 398 ~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~ 477 (1724)
T 4f92_B 398 DLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQY 477 (1724)
T ss_dssp HHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCH
T ss_pred HHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHH
Confidence 9999999999999999999999999999985 443 4689999999999999875 599999988877655
Q ss_pred HHHHH
Q 010876 450 AKELI 454 (498)
Q Consensus 450 ~~~l~ 454 (498)
...++
T Consensus 478 ~~~ll 482 (1724)
T 4f92_B 478 YLSLL 482 (1724)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55443
No 34
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=7.5e-45 Score=391.32 Aligned_cols=325 Identities=23% Similarity=0.298 Sum_probs=228.2
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH-HHHHHHhcCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-QQESTKFGAS 192 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~-~~~~~~~~~~ 192 (498)
.+|+|+|.++++.++.++++++++|||+|||++|++|++..+..... .+.+.++|||+|+++|+.|| .+++.+++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 48999999999999999999999999999999999999887765310 11236799999999999999 9999998865
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHH------hccCcccccccEEEeccchhhhcCC-cHHHHHHHH
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML------ESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKIL 265 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l------~~~~~~l~~~~~vI~DE~h~~~~~~-~~~~~~~i~ 265 (498)
.+.+..++|+.........+....+|+|+||++|.+.+ ......+.++++|||||||++.... +...+..++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 58899999998877777777788999999999999888 3445678899999999999986543 222222222
Q ss_pred Hh----cC---------CCCcEEEEcCCCcHH-----------HHHHHHHHh------------------cCCeEEEE-c
Q 010876 266 SQ----IR---------PDRQTLYWSATWPKE-----------VEHLARQYL------------------YNPYKVII-G 302 (498)
Q Consensus 266 ~~----~~---------~~~~~i~~SAT~~~~-----------~~~~~~~~~------------------~~~~~~~~-~ 302 (498)
.. .. +.+++++||||+... +..+...+. ..|..... .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 21 11 678999999999851 222222221 11111110 0
Q ss_pred CCCccc---------------------cccee-----eeE----------------------------------------
Q 010876 303 SPDLKA---------------------NHAIR-----QHV---------------------------------------- 316 (498)
Q Consensus 303 ~~~~~~---------------------~~~~~-----~~~---------------------------------------- 316 (498)
...... ..... +.+
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00000 000
Q ss_pred ---------------------------eec-------------------------chhhhHHHHHHHHHhhc---C-CCe
Q 010876 317 ---------------------------DIV-------------------------SESQKYNKLVKLLEDIM---D-GSR 340 (498)
Q Consensus 317 ---------------------------~~~-------------------------~~~~k~~~l~~~l~~~~---~-~~~ 340 (498)
... ....|...|.++|.... . +.+
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 000 01122223333443321 2 679
Q ss_pred EEEEeCCcccHHHHHHHHhhC------CCCeEEecCC--------CCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 010876 341 ILIFMDTKKGCDQITRQLRMD------GWPALSIHGD--------KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 406 (498)
Q Consensus 341 vlIf~~s~~~~~~l~~~L~~~------~~~~~~lh~~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 406 (498)
+||||+++..++.+++.|+.. |+++..+||+ |++.+|..+++.|++|+++|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEecc
Q 010876 407 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 444 (498)
Q Consensus 407 v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 444 (498)
+++||+||+|+|+..|+||+||+||.| .+++++..
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999976654 55555544
No 35
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.1e-43 Score=369.07 Aligned_cols=321 Identities=20% Similarity=0.239 Sum_probs=232.2
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 111 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 111 ~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.|+ .|+++|..+++.+++|+ |+.++||+|||++|.+|++..... ++.++||+||++||.|.++++..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 354 99999999999999997 999999999999999999876543 5679999999999999999999999
Q ss_pred CCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHH-HHHHhcc------CcccccccEEEeccchhhh-cCC------
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DMG------ 256 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-~~~l~~~------~~~l~~~~~vI~DE~h~~~-~~~------ 256 (498)
..+++++.+++||.+. +.+....+++|+|+||++| .+++... ...++++.++|+||||+|+ +++
T Consensus 140 ~~lgl~v~~i~GG~~~--~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIi 217 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPA--PAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLII 217 (853)
T ss_dssp HHTTCCEEECCTTCCH--HHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEE
T ss_pred HhcCCeEEEEeCCCCH--HHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccc
Confidence 9999999999999864 3445556799999999999 7877654 2557899999999999998 442
Q ss_pred ---------cHHHHHHHHHhcCC--------------------CCcEE------------------------EEcCCCcH
Q 010876 257 ---------FEPQIKKILSQIRP--------------------DRQTL------------------------YWSATWPK 283 (498)
Q Consensus 257 ---------~~~~~~~i~~~~~~--------------------~~~~i------------------------~~SAT~~~ 283 (498)
|...+..++..+++ .+|++ ++|||.+.
T Consensus 218 Sg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~ 297 (853)
T 2fsf_A 218 SGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIM 297 (853)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred cCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccch
Confidence 56677788777753 45553 88999754
Q ss_pred HHHHH---H--HHHhc--------CC-----------------------------eEEEEcCCCccccccee--------
Q 010876 284 EVEHL---A--RQYLY--------NP-----------------------------YKVIIGSPDLKANHAIR-------- 313 (498)
Q Consensus 284 ~~~~~---~--~~~~~--------~~-----------------------------~~~~~~~~~~~~~~~~~-------- 313 (498)
....+ + ..++. +. ..+.+.... .....+.
T Consensus 298 ~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~-~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 298 LMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNEN-QTLASITFQNYFRLY 376 (853)
T ss_dssp -----------------------------------------------------------CCCCC-EEEEEEEHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccc-cccceeehHHHHhhh
Confidence 22111 1 11110 00 011111110 0001111
Q ss_pred ---------------------------------------eeEeecchhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHH
Q 010876 314 ---------------------------------------QHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQ 353 (498)
Q Consensus 314 ---------------------------------------~~~~~~~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~ 353 (498)
..+..+...+|...+.+.+.... .+.++||||+|+..++.
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~ 456 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSEL 456 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHH
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 11233466789999998887653 55689999999999999
Q ss_pred HHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC--------------------------
Q 010876 354 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV-------------------------- 407 (498)
Q Consensus 354 l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v-------------------------- 407 (498)
|+..|+..|+++..+||+..+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 457 Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~ 534 (853)
T 2fsf_A 457 VSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQ 534 (853)
T ss_dssp HHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhh
Confidence 9999999999999999999888888888888887 699999999999999873
Q ss_pred -----------CEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 408 -----------KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 408 -----------~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
.+||+++.|.|...|.||+||+||.|.+|.++.|++..|.
T Consensus 535 ~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 535 VRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999987764
No 36
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.2e-42 Score=358.33 Aligned_cols=336 Identities=19% Similarity=0.254 Sum_probs=263.2
Q ss_pred HCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 110 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 110 ~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
..|+ .|+++|..+++.+++|+ |+.++||+|||++|.+|++...+. ++.++||+||++||.|.++++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3577 99999999999999997 999999999999999999766554 456999999999999999999999
Q ss_pred cCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHH-HHHHhcc------CcccccccEEEeccchhhh-cC------
Q 010876 190 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DM------ 255 (498)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-~~~l~~~------~~~l~~~~~vI~DE~h~~~-~~------ 255 (498)
+..+++++.+++|+.+. +.+....+++|+|+||++| .+++... ...++.+.++||||||+|+ ++
T Consensus 176 ~~~lGLsv~~i~gg~~~--~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTP--DERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCH--HHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCH--HHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 99999999999999864 3344455789999999999 7777653 3567889999999999998 32
Q ss_pred ---------CcHHHHHHHHHhcC---------CCCcEE-----------------EEcCCCcH---HHHHHHH--HHhc-
Q 010876 256 ---------GFEPQIKKILSQIR---------PDRQTL-----------------YWSATWPK---EVEHLAR--QYLY- 294 (498)
Q Consensus 256 ---------~~~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~---~~~~~~~--~~~~- 294 (498)
+|...+..++..++ +.+|++ ++|||.+. .+...++ .++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 47789999999997 678888 89999875 3333222 1221
Q ss_pred CC-------eEEEEcCC----------------------Cc------cccccee--------------------------
Q 010876 295 NP-------YKVIIGSP----------------------DL------KANHAIR-------------------------- 313 (498)
Q Consensus 295 ~~-------~~~~~~~~----------------------~~------~~~~~~~-------------------------- 313 (498)
+. ..+.+... .. .....+.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 11 11111110 00 0000001
Q ss_pred ---------------------eeEeecchhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCC
Q 010876 314 ---------------------QHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 371 (498)
Q Consensus 314 ---------------------~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~ 371 (498)
..+..+...+|...+...+.+. ..+.++||||+|+..++.|+..|+..|+++..+|++
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 1122345677888888888764 345689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCC--------------------------------------------
Q 010876 372 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV-------------------------------------------- 407 (498)
Q Consensus 372 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v-------------------------------------------- 407 (498)
..+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 8877877787888877 699999999999999975
Q ss_pred --------CEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHH----HHHHHHHHHh
Q 010876 408 --------KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFA----KELITILEEA 460 (498)
Q Consensus 408 --------~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~----~~l~~~l~~~ 460 (498)
.+||+++.|.|...|.||+||+||.|.+|.++.|++..|.-+. ..+..++...
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~ 636 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRL 636 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHT
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHh
Confidence 4999999999999999999999999999999999998765332 3344445444
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.3e-42 Score=378.74 Aligned_cols=306 Identities=18% Similarity=0.207 Sum_probs=243.0
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
+|+++|.++++.+++++++++++|||+|||++|++++...+.. +.++||++|+++|+.|+++.+.++.. +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 7999999999999999999999999999999999988776543 67899999999999999999998754 4
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcE
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 274 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~ 274 (498)
+.+..++|+.... ...+|+|+||++|.+++......+.++++|||||||++.+++++..++.++..+++..++
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 6788888876532 347999999999999988877778999999999999999999999999999999999999
Q ss_pred EEEcCCCcHHHHHHHHHHh---cCCeEEEEcCCCcccccceeeeE-----------------------------------
Q 010876 275 LYWSATWPKEVEHLARQYL---YNPYKVIIGSPDLKANHAIRQHV----------------------------------- 316 (498)
Q Consensus 275 i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 316 (498)
+++|||+++.. ++...+. ..+..+...... ...+.+.+
T Consensus 182 IlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r---~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (997)
T 4a4z_A 182 ILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR---PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKG 257 (997)
T ss_dssp EEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC---SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------
T ss_pred EEEcCCCCChH-HHHHHHhcccCCceEEEecCCC---CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccc
Confidence 99999998644 4444332 122222221111 00011000
Q ss_pred ----------------------------------------------------------eecchhhhHHHHHHHHHhhcCC
Q 010876 317 ----------------------------------------------------------DIVSESQKYNKLVKLLEDIMDG 338 (498)
Q Consensus 317 ----------------------------------------------------------~~~~~~~k~~~l~~~l~~~~~~ 338 (498)
.......+...+...+... ..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~ 336 (997)
T 4a4z_A 258 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-EL 336 (997)
T ss_dssp -----------------------------------------------------------CCCCTTHHHHHHHHHHHT-TC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CC
Confidence 0011223345566666553 34
Q ss_pred CeEEEEeCCcccHHHHHHHHhhCCC---------------------------------------CeEEecCCCCHHHHHH
Q 010876 339 SRILIFMDTKKGCDQITRQLRMDGW---------------------------------------PALSIHGDKSQAERDW 379 (498)
Q Consensus 339 ~~vlIf~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~lh~~~~~~~r~~ 379 (498)
.++||||++++.|+.++..|...++ .+..+|+++++.+|..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHH
Confidence 5899999999999999999977655 4789999999999999
Q ss_pred HHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCC---------ChhHHHHhhcccccCC--CcceEEEEec
Q 010876 380 VLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG---------SLEDYVHRIGRTGRAG--AKGTAYTFFT 443 (498)
Q Consensus 380 ~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~---------s~~~~~Qr~GR~~R~g--~~g~~~~~~~ 443 (498)
+++.|++|.++|||||+++++|||+|+ ..||+++.+. |+.+|+||+|||||.| ..|.|++++.
T Consensus 417 v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 417 IEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 999999999999999999999999999 5555555554 9999999999999998 4577777773
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-43 Score=375.85 Aligned_cols=333 Identities=19% Similarity=0.233 Sum_probs=247.9
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 010876 103 YVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 176 (498)
Q Consensus 103 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~------~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~ 176 (498)
.+.+.+...+| +||++|.++++.++.+ .+++++++||||||++|++|++..+.. +.+++|++||+
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPtr 427 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPTS 427 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSCH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcH
Confidence 44445567788 9999999999998865 589999999999999999999988765 57799999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh---HHHHhc-CCcEEEcChHHHHHHHhccCcccccccEEEeccchhh
Q 010876 177 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 252 (498)
Q Consensus 177 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~ 252 (498)
+||.|+++.+.++....++++..++|+...... ...+.. .++|+|+||+.+.+ ...+.++++||+||+|++
T Consensus 428 ~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 428 ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchh
Confidence 999999999999988888999999998875543 233444 48999999988754 456789999999999996
Q ss_pred hcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHH
Q 010876 253 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLL 332 (498)
Q Consensus 253 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 332 (498)
.... ...+.......++++||||+.+....+.. ..+.....+.... .....+...+ ....+...+.+.+
T Consensus 503 g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p-~~r~~i~~~~---~~~~~~~~l~~~i 571 (780)
T 1gm5_A 503 GVKQ-----REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMP-PGRKEVQTML---VPMDRVNEVYEFV 571 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCC-SSCCCCEECC---CCSSTHHHHHHHH
T ss_pred hHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccC-CCCcceEEEE---eccchHHHHHHHH
Confidence 4221 12222333578999999998765544332 2222211222111 1111222211 1223344445555
Q ss_pred Hh-hcCCCeEEEEeCCcc--------cHHHHHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 010876 333 ED-IMDGSRILIFMDTKK--------GCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 400 (498)
Q Consensus 333 ~~-~~~~~~vlIf~~s~~--------~~~~l~~~L~~---~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 400 (498)
.. ...+.+++|||++++ .++.+++.|+. .++.+..+||+|++.+|+.+++.|++|+++|||||+++++
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~ 651 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV 651 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc
Confidence 43 445678999999764 57888899987 4788999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCC-ChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhC
Q 010876 401 GLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG 461 (498)
Q Consensus 401 Gldi~~v~~VI~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 461 (498)
|+|+|++++||+++.|. +.+.|.||+||+||.|+.|.|++++++.+. .....++.+++..
T Consensus 652 GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~-~~~~rl~~l~~~~ 712 (780)
T 1gm5_A 652 GIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGE-EAMERLRFFTLNT 712 (780)
T ss_dssp CSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCH-HHHHHHHHHHTCC
T ss_pred cccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCCh-HHHHHHHHHHhhh
Confidence 99999999999999995 789999999999999999999999884433 3344455555543
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.1e-42 Score=392.34 Aligned_cols=343 Identities=17% Similarity=0.200 Sum_probs=262.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhc-CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH
Q 010876 100 FPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 178 (498)
Q Consensus 100 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~-~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~L 178 (498)
+.....+.+...+|..++|+|.++++.++. +++++++||||||||++|.+|++..+... .+.++||++|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 455677777778899999999999999975 56799999999999999999999998864 25679999999999
Q ss_pred HHHHHHHHH-HhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc--CcccccccEEEeccchhhhcC
Q 010876 179 AVQIQQEST-KFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDM 255 (498)
Q Consensus 179 a~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~--~~~l~~~~~vI~DE~h~~~~~ 255 (498)
|.|+++.+. +|+...++++..++|+..... .....++|+|||||+|..++.+. ...++++++||+||+|.+.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~---~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHH---HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcch---hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 999999987 577778899999988764321 22345799999999997776542 334789999999999988875
Q ss_pred CcHHHHHHHHHh-------cCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecch---h---
Q 010876 256 GFEPQIKKILSQ-------IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE---S--- 322 (498)
Q Consensus 256 ~~~~~~~~i~~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 322 (498)
++..++.++.. .++..|+|+||||+++ ..++++.+..++..+..-... ..+..+...+..... .
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCSHHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCCchhhh
Confidence 57666665543 4578999999999986 566766654443322222211 122233333322211 1
Q ss_pred -hhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC----------------------------------CCCeEE
Q 010876 323 -QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD----------------------------------GWPALS 367 (498)
Q Consensus 323 -~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~----------------------------------~~~~~~ 367 (498)
.....+...+.....++++||||++++.|+.++..|... ...+..
T Consensus 1139 ~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1139 LSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp HTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 122334455666667789999999999999888776321 134788
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEE----cC------CCCChhHHHHhhcccccCCC--c
Q 010876 368 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD------FPGSLEDYVHRIGRTGRAGA--K 435 (498)
Q Consensus 368 lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~------~p~s~~~~~Qr~GR~~R~g~--~ 435 (498)
+|++|++.+|..+++.|++|.++|||||+++++|||+|+..+||. |+ .|.++.+|+||+|||||.|. .
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 999999999999999999999999999999999999999999883 22 35689999999999999987 5
Q ss_pred ceEEEEeccccHHHHHHHH
Q 010876 436 GTAYTFFTAANARFAKELI 454 (498)
Q Consensus 436 g~~~~~~~~~~~~~~~~l~ 454 (498)
|.|++++.+.+...+..++
T Consensus 1299 G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp EEEEEEEEGGGHHHHHHHT
T ss_pred eEEEEEecchHHHHHHHHh
Confidence 9999999888877666553
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.4e-41 Score=377.91 Aligned_cols=323 Identities=20% Similarity=0.213 Sum_probs=253.8
Q ss_pred CCCCHHHHHHHHH-CCCCCCcHHHHHHHHHhhc----CC--cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010876 98 VGFPDYVMQEISK-AGFFEPTPIQAQGWPMALK----GR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 170 (498)
Q Consensus 98 ~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~----~~--~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 170 (498)
++++....+.+.. .+| +|||+|.++++.++. ++ +++++++||+|||++|+++++..+.. +++++
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEE
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCeEE
Confidence 3456666666654 455 689999999999886 65 89999999999999999888776553 67899
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh---HHHHhc-CCcEEEcChHHHHHHHhccCcccccccEEEe
Q 010876 171 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVL 246 (498)
Q Consensus 171 vl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~ 246 (498)
|++||++||.|+++.+.++....++++..+.+....... ...+.. .++|+|+||+.+. ....+.++++||+
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 999999999999999998887778888888876654333 233444 4899999997663 3456789999999
Q ss_pred ccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHH
Q 010876 247 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYN 326 (498)
Q Consensus 247 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 326 (498)
||+|++ ......++..++...++++||||+++....+....+.+...+ .... .....+...+.... +..
T Consensus 732 DEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i--~~~~-~~r~~i~~~~~~~~---~~~ 800 (1151)
T 2eyq_A 732 DEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII--ATPP-ARRLAVKTFVREYD---SMV 800 (1151)
T ss_dssp ESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEEC--CCCC-CBCBCEEEEEEECC---HHH
T ss_pred echHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEE--ecCC-CCccccEEEEecCC---HHH
Confidence 999994 344556666677789999999998776666655544433222 1111 11223333333222 223
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 010876 327 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 404 (498)
Q Consensus 327 ~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 404 (498)
....++.....+++++|||+++.+++.+++.|+.. ++.+..+||+|++.+|+.+++.|++|+++|||||+++++|+|+
T Consensus 801 i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 801 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 33344555566789999999999999999999876 7889999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCC-CCChhHHHHhhcccccCCCcceEEEEeccc
Q 010876 405 KDVKYVINYDF-PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 445 (498)
Q Consensus 405 ~~v~~VI~~~~-p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 445 (498)
|++++||+++. +++..+|.||+||+||.|+.|.|++++.+.
T Consensus 881 p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999988 578999999999999999999999998764
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.9e-42 Score=357.55 Aligned_cols=312 Identities=18% Similarity=0.177 Sum_probs=239.7
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
.+|+|+|.++++.++.++++++++|||+|||++|+.++...+... ..++|||+|+++|+.||.+.+.++....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 489999999999999999999999999999999999888776541 3489999999999999999999997777
Q ss_pred CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCc
Q 010876 194 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 273 (498)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~ 273 (498)
+..+..++++.....+ .....+|+|+||+.+.. .....+.++++||+||+|++.. ..+..++..+.+..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 7888888888766544 45678999999997643 2334577899999999999875 567788888888899
Q ss_pred EEEEcCCCcHHHHHHHH-HHhcCCeEEEEcCCCcc-----cccceeeeE---------------------eecchhhhHH
Q 010876 274 TLYWSATWPKEVEHLAR-QYLYNPYKVIIGSPDLK-----ANHAIRQHV---------------------DIVSESQKYN 326 (498)
Q Consensus 274 ~i~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~---------------------~~~~~~~k~~ 326 (498)
+++||||+++....... ..+..+..+.....+.. ....+.... .......+..
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99999999765433211 11223322222111100 000000000 0111123444
Q ss_pred HHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccccCC
Q 010876 327 KLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLD 403 (498)
Q Consensus 327 ~l~~~l~~~~--~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gld 403 (498)
.+.+++.... ...++||||+ .++++.+++.|...+.++..+||+++..+|+.+++.|++|+.+||||| +++++|+|
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 4555555542 2335666666 899999999999988899999999999999999999999999999999 99999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEec
Q 010876 404 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 443 (498)
Q Consensus 404 i~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 443 (498)
+|++++||+++.|+++..|.||+||+||.|+.+.++++++
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999998875555554
No 42
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.1e-41 Score=314.89 Aligned_cols=239 Identities=65% Similarity=1.097 Sum_probs=221.0
Q ss_pred CCHHHHHHHHHhcCceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHH
Q 010876 67 MSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 67 ~~~~e~~~~~~~~~i~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~ 146 (498)
++.++++.+++...+.+.+...|+|+.+|+++++++.+++.+.+.||.+|+++|.++++.+++++++++++|||+|||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHH
Q 010876 147 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 226 (498)
Q Consensus 147 ~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~ 226 (498)
|++|++.++...+......++++||++|+++|+.|+++.+.++....++.+..++|+.....+...+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999999987665555568889999999999999999999998888899999999998888888888889999999999
Q ss_pred HHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCC
Q 010876 227 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD 305 (498)
Q Consensus 227 l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (498)
|.+++......+.++++||+||||++.+++|...+..++..++++.|+++||||+|+++..+++.++.+|..+.++..+
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~e 241 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALE 241 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC--
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCCC
Confidence 9999988888899999999999999999999999999999999999999999999999999999999999998876643
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.8e-43 Score=365.70 Aligned_cols=324 Identities=19% Similarity=0.150 Sum_probs=240.2
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 010876 98 VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 177 (498)
Q Consensus 98 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~ 177 (498)
+++++.+.+.+... ...++|+|+.+++.+++++++++++|||||||++|++|++..+.. .++++||++||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 34555555544332 467899988889999999999999999999999999999988876 2578999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc
Q 010876 178 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 257 (498)
Q Consensus 178 La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~ 257 (498)
||.|+.+.+..+ .+. ....... .....+..+.++|.+.+...+... ..+.++++||+||||++ +.+|
T Consensus 227 La~Qi~~~l~~~------~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~ 293 (618)
T 2whx_A 227 VAAEMEEALRGL------PIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCS 293 (618)
T ss_dssp HHHHHHHHTTTS------CEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHH
T ss_pred HHHHHHHHhcCC------cee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccH
Confidence 999999887632 222 1111100 011223467788888887766554 45889999999999998 6667
Q ss_pred HHHHHHHHHhcC-CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhc
Q 010876 258 EPQIKKILSQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM 336 (498)
Q Consensus 258 ~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 336 (498)
...+..++..++ ++.|+++||||++..+..+.. .++..+.+.... +. .+...+...+.+
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--------------~~-~~~~~ll~~l~~-- 353 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--------------PE-RSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--------------CS-SCCSSSCHHHHH--
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--------------CH-HHHHHHHHHHHh--
Confidence 777877777764 689999999999876443222 122222221110 00 011122233333
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEE------
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV------ 410 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V------ 410 (498)
..+++||||+++++|+.+++.|+..++++..+|++ +|..+++.|++|+.+|||||+++++|+|+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 35689999999999999999999999999999984 688899999999999999999999999997 8888
Q ss_pred --------------EEcCCCCChhHHHHhhcccccCCC-cceEEEEec---cccHHHHHHHHHHHHHhCCCCCHH
Q 010876 411 --------------INYDFPGSLEDYVHRIGRTGRAGA-KGTAYTFFT---AANARFAKELITILEEAGQKVSPE 467 (498)
Q Consensus 411 --------------I~~~~p~s~~~~~Qr~GR~~R~g~-~g~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~ 467 (498)
|+++.|.+.++|+||+||+||.|. .|.|++|++ +.+...+..+.+.+......+++.
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~ 503 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEG 503 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTC
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcc
Confidence 777789999999999999999965 899999998 777777888888776666666543
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.3e-41 Score=345.31 Aligned_cols=311 Identities=18% Similarity=0.137 Sum_probs=224.9
Q ss_pred CCCCCcHHHHHHHHHhhcCCcE-EEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 112 GFFEPTPIQAQGWPMALKGRDL-IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 112 ~~~~~~~~Q~~~i~~~l~~~~~-i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
|+.+|+|+|+ +++.+++++++ ++++|||||||++|++|++.++.. .++++||++||++||.|+++.+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~- 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALRGL- 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhcCc-
Confidence 5678999985 79999998886 899999999999999999987765 2578999999999999999987532
Q ss_pred CCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHH-hcC
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS-QIR 269 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~-~~~ 269 (498)
.+......... ....+..|.++|++.+.+.+... ..+.++++||+||||++ +..+...+..+.. ...
T Consensus 72 -----~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 72 -----PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp -----CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred -----eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 22211111100 11234578999999998877654 45789999999999977 3333333333322 235
Q ss_pred CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcc
Q 010876 270 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKK 349 (498)
Q Consensus 270 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~ 349 (498)
++.|+++||||++.....+ +..++..+...... . .. .+ ..+...+.+ ..+++||||++++
T Consensus 140 ~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~-p-~~----~~---------~~~~~~l~~--~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREI-P-ER----SW---------NTGFDWITD--YQGKTVWFVPSIK 199 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCC-C-SS----CC---------SSSCHHHHH--CCSCEEEECSSHH
T ss_pred CCceEEEEccCCCccchhh---hcCCCceEecCccC-C-ch----hh---------HHHHHHHHh--CCCCEEEEcCCHH
Confidence 6899999999998744322 22223222222110 0 00 00 011222333 3568999999999
Q ss_pred cHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcC---------------
Q 010876 350 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD--------------- 414 (498)
Q Consensus 350 ~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~--------------- 414 (498)
+|+.+++.|+..++.+..+|+++. +.+++.|++|+.+|||||+++++|+|+|+ ++||+++
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -----CCCChhHHHHhhcccccCCC-cceEEEEecccc---HHHHHHHHHHHHHhCCCCCHHH
Q 010876 415 -----FPGSLEDYVHRIGRTGRAGA-KGTAYTFFTAAN---ARFAKELITILEEAGQKVSPEL 468 (498)
Q Consensus 415 -----~p~s~~~~~Qr~GR~~R~g~-~g~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~l 468 (498)
.|.+..+|+||+||+||.|. .|.|++|+...+ ......+...+...+.++|+.+
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 99999999999999999998 788988875431 2222222344445666777554
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.2e-41 Score=345.40 Aligned_cols=294 Identities=20% Similarity=0.222 Sum_probs=222.9
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
.+|+|+|.++++.++.++++++++|||+|||++|+.++... +.++|||+|+++|+.||.+++.+|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 48999999999999999999999999999999999887654 346999999999999999999995
Q ss_pred Cce-EEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCC
Q 010876 194 KIK-STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 272 (498)
Q Consensus 194 ~~~-~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~ 272 (498)
++. +..++|+... ..+|+|+||+.+...+... ..++++||+||+|++.+..|.. ++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~ 219 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAP 219 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCS
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCC
Confidence 467 7777776543 4689999999987765421 2458999999999999887654 44444 578
Q ss_pred cEEEEcCCCcHH-------------------HHHHHHHHhcCCeEE--EEcCCCc-----------------------cc
Q 010876 273 QTLYWSATWPKE-------------------VEHLARQYLYNPYKV--IIGSPDL-----------------------KA 308 (498)
Q Consensus 273 ~~i~~SAT~~~~-------------------~~~~~~~~~~~~~~~--~~~~~~~-----------------------~~ 308 (498)
+++++|||+... ..++...++..+... .+..... ..
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 899999998621 222222222222111 1110000 00
Q ss_pred ccceeeeEe---------------------ecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEE
Q 010876 309 NHAIRQHVD---------------------IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 367 (498)
Q Consensus 309 ~~~~~~~~~---------------------~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~ 367 (498)
...+.+.+. .+....|...+.+++.. ..+.++||||+++..++.+++.|. +..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 000000000 12234567777888877 456799999999999999999884 557
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCc-ceEEE--Eecc
Q 010876 368 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK-GTAYT--FFTA 444 (498)
Q Consensus 368 lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~-g~~~~--~~~~ 444 (498)
+||+++..+|+.+++.|++|+++|||||+++++|+|+|++++||+++.|+|+..|+||+||++|.|+. +.+++ |++.
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999865 45444 4544
Q ss_pred c
Q 010876 445 A 445 (498)
Q Consensus 445 ~ 445 (498)
+
T Consensus 454 ~ 454 (472)
T 2fwr_A 454 G 454 (472)
T ss_dssp S
T ss_pred C
Confidence 3
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.8e-40 Score=350.86 Aligned_cols=336 Identities=18% Similarity=0.258 Sum_probs=246.3
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhc-CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010876 90 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 168 (498)
Q Consensus 90 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~-~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 168 (498)
.++.+|+++++++.+.+.+...+ ..|++.|+++++.++. ++++++++|||||||+ ++|++...... ..+.+.+
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~~ 142 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENTQ 142 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTCE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCce
Confidence 35678999999999999999887 6899999999998775 5679999999999999 45555222111 1112567
Q ss_pred EEEEcCcHHHHHHHHHHHHHhc-CCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEec
Q 010876 169 VLVLAPTRELAVQIQQESTKFG-ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 247 (498)
Q Consensus 169 vlvl~P~~~La~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~D 247 (498)
++|++|+++|+.|+++.+.... ...+..+....... . ......+|+++||+++.+.+... ..+.++++||||
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~---~---~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE---N---KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE---E---ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceeccc---c---ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 9999999999999998776543 22222222111100 0 01235789999999999877654 458899999999
Q ss_pred cchh-hhcCCc-HHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhH
Q 010876 248 EADR-MLDMGF-EPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY 325 (498)
Q Consensus 248 E~h~-~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 325 (498)
|+|. .++..+ ...+..+. ...++.++++||||++. ..+.. ++.+...+.+.... ..+.+.+......++.
T Consensus 216 Eah~R~ld~d~~~~~l~~l~-~~~~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~ 287 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVV-KRRPDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRT----YPVELYYTPEFQRDYL 287 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHH-HHCTTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCC----CCEEEECCSSCCSCHH
T ss_pred CccccccchHHHHHHHHHHH-HhCCCceEEEEeccccH--HHHHH-HhcCCCcccccCcc----cceEEEEecCCchhHH
Confidence 9995 555332 23344444 33468999999999964 33443 44443333332221 2344444333333444
Q ss_pred HHHHHHHHhh---cCCCeEEEEeCCcccHHHHHHHHhh-----------CCCCeEEecCCCCHHHHHHHHHHHh-----c
Q 010876 326 NKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRM-----------DGWPALSIHGDKSQAERDWVLSEFK-----A 386 (498)
Q Consensus 326 ~~l~~~l~~~---~~~~~vlIf~~s~~~~~~l~~~L~~-----------~~~~~~~lh~~~~~~~r~~~~~~f~-----~ 386 (498)
..++..+... ...+++||||+++.+++.+++.|+. .++.+..+||++++++|..+++.|+ +
T Consensus 288 ~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~ 367 (773)
T 2xau_A 288 DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR 367 (773)
T ss_dssp HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC
Confidence 3333333221 2467999999999999999999975 5778999999999999999999999 9
Q ss_pred CCCcEEEEeccccccCCCCCCCEEEEcCC------------------CCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 387 GKSPIMTATDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 387 g~~~vLvaT~~~~~Gldi~~v~~VI~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
|..+|||||+++++|||||++++||++++ |.|.++|+||+|||||. ..|.|+.|+++.+.
T Consensus 368 g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 368 PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp CCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999999999887 88999999999999999 89999999987543
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.7e-42 Score=348.85 Aligned_cols=289 Identities=18% Similarity=0.192 Sum_probs=202.0
Q ss_pred HhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 010876 126 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP 205 (498)
Q Consensus 126 ~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~ 205 (498)
.+++++++++++|||||||++|++|++..+... ++++||++||++||.|+++.+..+. +....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~~------v~~~~~~~~ 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGLD------VKFHTQAFS 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTSC------EEEESSCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcCC------eEEecccce
Confidence 467899999999999999999999999887652 5789999999999999999887542 221111100
Q ss_pred CchhHHHHhcCCcEEEcChHHHHHHHh--------ccCcccccccEEEeccchhhhcCCcHHHHHHHHHhc-CCCCcEEE
Q 010876 206 KGPQVRDLQKGVEIVIATPGRLIDMLE--------SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLY 276 (498)
Q Consensus 206 ~~~~~~~~~~~~~Ivi~T~~~l~~~l~--------~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~ 276 (498)
.++||+++.+++. .....+.++++||+||+|++ +..+...+..+.... ++..|+++
T Consensus 71 --------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 71 --------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp --------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred --------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 2555544332221 12234789999999999998 333333333332222 36799999
Q ss_pred EcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHH
Q 010876 277 WSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITR 356 (498)
Q Consensus 277 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~ 356 (498)
||||+++.+..+... ..+..... ..+....+ ..+...+.+ .++++||||++++.|+.+++
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~~~~~---------------~~~~~~~~-~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~ 195 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEIEDVQ---------------TDIPSEPW-NTGHDWILA--DKRPTAWFLPSIRAANVMAA 195 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEEE---------------CCCCSSCC-SSSCHHHHH--CCSCEEEECSCHHHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCCeeEee---------------eccChHHH-HHHHHHHHh--cCCCEEEEeCCHHHHHHHHH
Confidence 999997754322211 01111100 00111111 111222222 35799999999999999999
Q ss_pred HHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEE-------------------cCCCC
Q 010876 357 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN-------------------YDFPG 417 (498)
Q Consensus 357 ~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~-------------------~~~p~ 417 (498)
.|+..++++..+|| ++|+.+++.|++|+++|||||+++++|+|+| +++||+ ++.|.
T Consensus 196 ~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~ 270 (440)
T 1yks_A 196 SLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRI 270 (440)
T ss_dssp HHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEEC
T ss_pred HHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccccc
Confidence 99999999999999 4688999999999999999999999999999 999996 88899
Q ss_pred ChhHHHHhhcccccC-CCcceEEEEe---ccccHHHHHHHHHHHHHhCCCCCHH
Q 010876 418 SLEDYVHRIGRTGRA-GAKGTAYTFF---TAANARFAKELITILEEAGQKVSPE 467 (498)
Q Consensus 418 s~~~~~Qr~GR~~R~-g~~g~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~ 467 (498)
+.++|+||+||+||. +++|.|++|+ ++.+...+..+...+.....+++..
T Consensus 271 ~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 324 (440)
T 1yks_A 271 SASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 324 (440)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGG
T ss_pred CHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccc
Confidence 999999999999997 6899999996 6777777888887777766666543
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=6.3e-41 Score=352.36 Aligned_cols=306 Identities=18% Similarity=0.204 Sum_probs=216.4
Q ss_pred CCcHHHH-----HHHHHhh------cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH
Q 010876 115 EPTPIQA-----QGWPMAL------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 183 (498)
Q Consensus 115 ~~~~~Q~-----~~i~~~l------~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~ 183 (498)
.|+++|+ ++|+.++ +++++++++|||||||++|++|++..+.. .++++||++||++||.|++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~lilaPTr~La~Q~~ 287 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAVLAPTRVVAAEMA 287 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEccHHHHHHHHH
Confidence 8999999 9999988 89999999999999999999999988765 2578999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHH
Q 010876 184 QESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKK 263 (498)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~ 263 (498)
+.+..+. +. ...+... .....+.-+-+.+.+.+...+... ..+.++++||+||+|++ +..+...+..
T Consensus 288 ~~l~~~~----i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~ 354 (673)
T 2wv9_A 288 EALRGLP----VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGY 354 (673)
T ss_dssp HHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHH
T ss_pred HHHhcCC----ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHH
Confidence 9887653 11 1010000 000111234445555555544443 46889999999999998 2212233333
Q ss_pred HHHhc-CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEE
Q 010876 264 ILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRIL 342 (498)
Q Consensus 264 i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vl 342 (498)
+.... ++..|+++||||++..+..+... ..++..... ...... ...++..+.+ ..+++|
T Consensus 355 l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~---------------~~~~~~-~~~~l~~l~~--~~~~~l 414 (673)
T 2wv9_A 355 IATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSS---------------EIPDRA-WSSGFEWITD--YAGKTV 414 (673)
T ss_dssp HHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC---------------CCCSSC-CSSCCHHHHS--CCSCEE
T ss_pred HHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEee---------------ecCHHH-HHHHHHHHHh--CCCCEE
Confidence 33333 36799999999998654322110 011111100 011111 1112222322 467999
Q ss_pred EEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEE----------
Q 010876 343 IFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN---------- 412 (498)
Q Consensus 343 If~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~---------- 412 (498)
|||+++++++.+++.|+..++++..+||+ +|+.+++.|++|+++|||||+++++|||+| +++||+
T Consensus 415 VF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi 489 (673)
T 2wv9_A 415 WFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTIL 489 (673)
T ss_dssp EECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEE
T ss_pred EEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceee
Confidence 99999999999999999999999999994 789999999999999999999999999999 999998
Q ss_pred ----------cCCCCChhHHHHhhcccccC-CCcceEEEEe---ccccHHHHHHHHHHHHHhCCCCC
Q 010876 413 ----------YDFPGSLEDYVHRIGRTGRA-GAKGTAYTFF---TAANARFAKELITILEEAGQKVS 465 (498)
Q Consensus 413 ----------~~~p~s~~~~~Qr~GR~~R~-g~~g~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~ 465 (498)
++.|.+.++|+||+||+||. ++.|.|++|+ ++.+...+..+...++-...+++
T Consensus 490 ~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~ 556 (673)
T 2wv9_A 490 DEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLP 556 (673)
T ss_dssp CSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBT
T ss_pred ecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCC
Confidence 66899999999999999999 7899999996 56666666666665544433333
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3e-40 Score=341.90 Aligned_cols=279 Identities=22% Similarity=0.245 Sum_probs=211.2
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.++++|.++++.+..+++++++||||||||++|.+|++.. +.++||++|||+||.|+++.+.+...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~g--- 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAHG--- 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHHS---
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHhC---
Confidence 5666777777777788899999999999999999887752 45799999999999999998876542
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCc-
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ- 273 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~- 273 (498)
..+...+|+.. ...+.+|+|+||++| +......+.++++|||||||. .+.+|...+..+++.++...+
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCc
Confidence 33445555543 345689999999998 455667788999999999964 556678888889988877666
Q ss_pred -EEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHH
Q 010876 274 -TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 352 (498)
Q Consensus 274 -~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~ 352 (498)
+++||||++..+. ...+....+.... ...+. ....... + .....+++||||++++.++
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~~~---~~~i~----~~~~~~~-------l-~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVALSN---TGEIP----FYGKAIP-------I-EAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEECBS---CSSEE----ETTEEEC-------G-GGSSSSEEEEECSCHHHHH
T ss_pred eEEEECCCCCcccc------cCCcceEEEeecc---cchhH----HHHhhhh-------h-hhccCCcEEEEeCCHHHHH
Confidence 7788999987321 1111111110000 00010 0000000 1 1225679999999999999
Q ss_pred HHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEE----------EcC--------
Q 010876 353 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----------NYD-------- 414 (498)
Q Consensus 353 ~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI----------~~~-------- 414 (498)
.+++.|++.++++..+||++++++ |+++..+|||||+++++|||++ +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999865 4566779999999999999997 99988 677
Q ss_pred ---CCCChhHHHHhhcccccCCCcceEEEEeccccHHH
Q 010876 415 ---FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 449 (498)
Q Consensus 415 ---~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 449 (498)
.|.+.++|+||+||+|| |+.|. ++|+++.+...
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 89999 99998775443
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=3.8e-39 Score=327.80 Aligned_cols=275 Identities=19% Similarity=0.223 Sum_probs=197.5
Q ss_pred HHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEe
Q 010876 122 QGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIY 201 (498)
Q Consensus 122 ~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~ 201 (498)
+....+.+++++++++|||||||++|++|++..+.. .++++||++||++||.|+++.+..+ .+....
T Consensus 13 ~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~ 79 (459)
T 2z83_A 13 GSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALRGL------PVRYQT 79 (459)
T ss_dssp --CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTTTS------CEEECC
T ss_pred HHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhcCc------eEeEEe
Confidence 334456678899999999999999999999988775 2577999999999999999988732 222111
Q ss_pred CCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh-----hhcCCcHHHHHHHHHhcCCCCcEEE
Q 010876 202 GGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-----MLDMGFEPQIKKILSQIRPDRQTLY 276 (498)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~-----~~~~~~~~~~~~i~~~~~~~~~~i~ 276 (498)
+.... ....+..+.++|.+.+...+... ..+.++++||+||||+ +...+|...+ . ..+..|+++
T Consensus 80 ~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~---~--~~~~~~~il 148 (459)
T 2z83_A 80 SAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATK---V--ELGEAAAIF 148 (459)
T ss_dssp -------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHH---H--HTTSCEEEE
T ss_pred ccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHH---h--ccCCccEEE
Confidence 11110 11233467788988887766554 4578999999999998 3433332221 1 236899999
Q ss_pred EcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHH
Q 010876 277 WSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITR 356 (498)
Q Consensus 277 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~ 356 (498)
||||++..+..+... ..|+...... .+. .+...+...+.+ ..+++||||+++..|+.+++
T Consensus 149 ~SAT~~~~~~~~~~~--~~pi~~~~~~---------------~~~-~~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 149 MTATPPGTTDPFPDS--NAPIHDLQDE---------------IPD-RAWSSGYEWITE--YAGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEEECC---------------CCS-SCCSSCCHHHHH--CCSCEEEECSCHHHHHHHHH
T ss_pred EEcCCCcchhhhccC--CCCeEEeccc---------------CCc-chhHHHHHHHHh--cCCCEEEEeCChHHHHHHHH
Confidence 999998754322111 1222221100 000 000111222333 25689999999999999999
Q ss_pred HHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEE--------------------cCCC
Q 010876 357 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN--------------------YDFP 416 (498)
Q Consensus 357 ~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~--------------------~~~p 416 (498)
.|+..++.+..+|++ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|
T Consensus 209 ~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 209 CLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC
Confidence 999999999999995 6788999999999999999999999999999 99999 7799
Q ss_pred CChhHHHHhhcccccCCC-cceEEEEeccc
Q 010876 417 GSLEDYVHRIGRTGRAGA-KGTAYTFFTAA 445 (498)
Q Consensus 417 ~s~~~~~Qr~GR~~R~g~-~g~~~~~~~~~ 445 (498)
.|..+|+||+||+||.|. .|.+++|++..
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999999997 89999999875
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4.2e-38 Score=331.61 Aligned_cols=304 Identities=18% Similarity=0.192 Sum_probs=189.2
Q ss_pred CCcHHHHHHHHHhhc----C-CcEEEEcCCCchHHHHHHHHHHHHHhcCCC--CCCCCCCEEEEEcCcHHHHHHHH-HHH
Q 010876 115 EPTPIQAQGWPMALK----G-RDLIGIAETGSGKTLAYLLPAIVHVNAQPF--LAPGDGPIVLVLAPTRELAVQIQ-QES 186 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~----~-~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~--~~~~~~~~vlvl~P~~~La~q~~-~~~ 186 (498)
.|+++|.++++.++. + ++++++++||+|||++++. ++..+..... .....++++|||+|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999875 4 5699999999999999655 4444443211 11124678999999999999999 777
Q ss_pred HHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc----cCcccccccEEEeccchhhhcCCcHHHHH
Q 010876 187 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES----HNTNLRRVTYLVLDEADRMLDMGFEPQIK 262 (498)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~----~~~~l~~~~~vI~DE~h~~~~~~~~~~~~ 262 (498)
..|+. .+..+.++. ...+.+|+|+||++|...... ..+....+++||+||||++.... ...+.
T Consensus 257 ~~~~~----~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFGD----ARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcch----hhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 77753 233333221 234679999999999876542 23345678999999999987653 34566
Q ss_pred HHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEE-----------------E-EcCCCccc------------ccce
Q 010876 263 KILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV-----------------I-IGSPDLKA------------NHAI 312 (498)
Q Consensus 263 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-----------------~-~~~~~~~~------------~~~~ 312 (498)
.++..++ ..++++||||+..........++..+... . +....... ...+
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 7777764 57899999998743322222222222211 1 10000000 0000
Q ss_pred eeeEee-------cchhhhHHH----HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCC--------CeEEecCCCC
Q 010876 313 RQHVDI-------VSESQKYNK----LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW--------PALSIHGDKS 373 (498)
Q Consensus 313 ~~~~~~-------~~~~~k~~~----l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~--------~~~~lh~~~~ 373 (498)
...... .....+... +.+.+......+++||||+++.+|+.+++.|+..+. .+..+||.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 000000 000112222 333344444557999999999999999999976532 2678899875
Q ss_pred HHHHHHHHHHHhcCCCc---EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCC
Q 010876 374 QAERDWVLSEFKAGKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA 434 (498)
Q Consensus 374 ~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~ 434 (498)
++|+.+++.|++++.+ |||||+++++|+|+|++++||++++|+|+..|+||+||++|.+.
T Consensus 483 -~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 -KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp -HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred -HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 3799999999998766 88899999999999999999999999999999999999999875
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=8.6e-38 Score=315.25 Aligned_cols=269 Identities=17% Similarity=0.173 Sum_probs=192.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCch
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 208 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (498)
+++++++++|||||||++|++|++..+.. .+++++|++||++||.|+++.+. ++.+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 36899999999999999999999977665 25689999999999999998775 2344433332111
Q ss_pred hHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhc-CCCCcEEEEcCCCcHHHHH
Q 010876 209 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEH 287 (498)
Q Consensus 209 ~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~ 287 (498)
.-..+..+.+.|.+.+.+.+.. ...+.++++||+||+|++ +..+......+.... ++.+++++||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1122456777888888766655 455889999999999997 333333333343332 5689999999999874321
Q ss_pred HHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEE
Q 010876 288 LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 367 (498)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~ 367 (498)
+... ..+... +. ...+ ..+...+...+.+ ..+++||||+++++++.+++.|+..++++..
T Consensus 141 ~~~~--~~~i~~-~~--------------~~~~-~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 141 FPPS--NSPIID-EE--------------TRIP-DKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp SCCC--SSCCEE-EE--------------CCCC-SSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCC--CCceee-cc--------------ccCC-HHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 1100 001100 00 0000 1111222333433 2568999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCE-----------------EEEcCCCCChhHHHHhhcccc
Q 010876 368 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY-----------------VINYDFPGSLEDYVHRIGRTG 430 (498)
Q Consensus 368 lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~-----------------VI~~~~p~s~~~~~Qr~GR~~ 430 (498)
+||+ +|+.+++.|++|+++|||||+++++|+|+| +.+ ||+++.|.+.++|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 554 678889999999999999999
Q ss_pred cCCC-cceEEEEe
Q 010876 431 RAGA-KGTAYTFF 442 (498)
Q Consensus 431 R~g~-~g~~~~~~ 442 (498)
|.|. .|.+++|.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9985 45556555
No 53
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.9e-37 Score=283.36 Aligned_cols=215 Identities=51% Similarity=0.892 Sum_probs=188.4
Q ss_pred cCCCCCCcCCccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCC-
Q 010876 85 GRDVPKPVKSFRD-VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA- 162 (498)
Q Consensus 85 ~~~~~~~~~~f~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~- 162 (498)
....|+|..+|++ +++++.+++.+.+.|+.+|+++|.++++.+++++++++++|||+|||++|++|++.++.......
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 5568999999999 79999999999999999999999999999999999999999999999999999998886532211
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCccccccc
Q 010876 163 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVT 242 (498)
Q Consensus 163 ~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~ 242 (498)
...++++||++|+++|+.|+.+.+.++. ..++.+..++|+.....+...+..+++|+|+||++|.+++......+.+++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 2347789999999999999999999986 457889999999988888888888899999999999999988888899999
Q ss_pred EEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEE
Q 010876 243 YLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 300 (498)
Q Consensus 243 ~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 300 (498)
+||+||||++.+++|...+..++..++++.|+++||||+|+++.++++.++.+|..+.
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999999988765
No 54
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=8.6e-37 Score=286.88 Aligned_cols=226 Identities=43% Similarity=0.726 Sum_probs=199.0
Q ss_pred CceEecCCCCC--CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhc
Q 010876 80 EITVEGRDVPK--PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNA 157 (498)
Q Consensus 80 ~i~~~~~~~~~--~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~ 157 (498)
.+.+.+...|. ++.+|+++++++.+++.+...|+..|+++|.++++.+++++++++++|||+|||++|++|++.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~ 87 (253)
T 1wrb_A 8 PVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVC 87 (253)
T ss_dssp CCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 34556777776 8899999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCC----CCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc
Q 010876 158 QPFL----APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES 233 (498)
Q Consensus 158 ~~~~----~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~ 233 (498)
.... ....++++||++|+++|+.|+++.+.++....++.+..++|+.....+...+..+++|+|+||++|.+++..
T Consensus 88 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~ 167 (253)
T 1wrb_A 88 QDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK 167 (253)
T ss_dssp TCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT
T ss_pred hccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc
Confidence 4311 122357899999999999999999999988888999999999988888888888899999999999999988
Q ss_pred cCcccccccEEEeccchhhhcCCcHHHHHHHHHhc--CC--CCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCC
Q 010876 234 HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD 305 (498)
Q Consensus 234 ~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (498)
....+.++++||+||||++.+++|...+..++..+ +. ..|+++||||+++++..+++.++.+|..+.+....
T Consensus 168 ~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 168 NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp TSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred CCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 88888999999999999999999999999999854 33 67999999999999999999999999988776654
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=7.8e-37 Score=335.73 Aligned_cols=336 Identities=15% Similarity=0.101 Sum_probs=231.6
Q ss_pred CCCcHHHHHHHHHhhcC--CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 010876 114 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 191 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~--~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~ 191 (498)
.+|+|||.+++..++.. .+++++++||+|||++++..+...+... ...++|||||+ +|+.||.+++.+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47999999999998864 4799999999999999877665555432 23469999999 99999999997654
Q ss_pred CCCceEEEEeCCCCCchhHH---HHhcCCcEEEcChHHHHHHHhc-cCcccccccEEEeccchhhhcCCcH--HHHHHHH
Q 010876 192 SSKIKSTCIYGGVPKGPQVR---DLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFE--PQIKKIL 265 (498)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ivi~T~~~l~~~l~~-~~~~l~~~~~vI~DE~h~~~~~~~~--~~~~~i~ 265 (498)
++.+..+.++... .... ......+|+|+|++.+...... ..+...++++||+||||++.+.... .....+.
T Consensus 224 --~l~v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 --NLRFALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp --CCCCEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred --CCCEEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 3444444332211 1111 1112468999999988542111 1123457899999999999765421 1122222
Q ss_pred HhcCCCCcEEEEcCCCcH----HHHHHHHH----------------------------HhcC------------------
Q 010876 266 SQIRPDRQTLYWSATWPK----EVEHLARQ----------------------------YLYN------------------ 295 (498)
Q Consensus 266 ~~~~~~~~~i~~SAT~~~----~~~~~~~~----------------------------~~~~------------------ 295 (498)
.......++++||||+.. ++..++.. +...
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 222356679999999732 11111100 0000
Q ss_pred ----------------------------------CeEEEEcCCCccc--ccceee-------------------------
Q 010876 296 ----------------------------------PYKVIIGSPDLKA--NHAIRQ------------------------- 314 (498)
Q Consensus 296 ----------------------------------~~~~~~~~~~~~~--~~~~~~------------------------- 314 (498)
...+......... ......
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 0000000000000 000000
Q ss_pred --------------------eEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhh-CCCCeEEecCCCC
Q 010876 315 --------------------HVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM-DGWPALSIHGDKS 373 (498)
Q Consensus 315 --------------------~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~-~~~~~~~lh~~~~ 373 (498)
....+....|...+.+++.. ..+.++||||+++..++.++..|.. .++++..+||+++
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 00122344678888888877 4567999999999999999999994 5999999999999
Q ss_pred HHHHHHHHHHHhcCC--CcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHH
Q 010876 374 QAERDWVLSEFKAGK--SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 451 (498)
Q Consensus 374 ~~~r~~~~~~f~~g~--~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~ 451 (498)
+.+|+.+++.|++|+ ++|||||+++++|+|+|++++||++|+|+++..|.||+||++|.|+.+.++++....+....+
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee 619 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQS 619 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHH
Confidence 999999999999998 999999999999999999999999999999999999999999999999877776655545556
Q ss_pred HHHHHHHHhC
Q 010876 452 ELITILEEAG 461 (498)
Q Consensus 452 ~l~~~l~~~~ 461 (498)
.+.+.+.++.
T Consensus 620 ~i~~~~~~k~ 629 (968)
T 3dmq_A 620 VLVRWYHEGL 629 (968)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 6666665443
No 56
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=4.3e-36 Score=279.02 Aligned_cols=212 Identities=31% Similarity=0.508 Sum_probs=179.7
Q ss_pred cCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 010876 85 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 164 (498)
Q Consensus 85 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 164 (498)
..+.+++..+|+++++++.+++.+...||..|+++|.++++.+++++++++++|||+|||++|++|++..+... .
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~ 96 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----F 96 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----S
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 34567778999999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcC-CcEEEcChHHHHHHHhccCcccccccE
Q 010876 165 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTY 243 (498)
Q Consensus 165 ~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ivi~T~~~l~~~l~~~~~~l~~~~~ 243 (498)
.++++||++|+++|+.|+++.+.+++...++.+..++|+.....+...+..+ ++|+|+||++|.+++......+.++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 3568999999999999999999999988888999999988776666666555 899999999999999887778889999
Q ss_pred EEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEE
Q 010876 244 LVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII 301 (498)
Q Consensus 244 vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 301 (498)
||+||||++.+++|...+..++..+++..|++++|||+++++.++++.++.+|..+.+
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999999887654
No 57
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=281.95 Aligned_cols=230 Identities=33% Similarity=0.564 Sum_probs=198.1
Q ss_pred HHHHHHHhcCceEecCCCCCCcCCcccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHH
Q 010876 71 EVEEYRQQREITVEGRDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 71 e~~~~~~~~~i~~~~~~~~~~~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~ 146 (498)
++..++++..+.+.+.+.|.|+.+|+++ ++++.+++.+.+.||..|+++|.++++.+++++++++++|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 5678888899999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH-HHHhcCCcEEEcChH
Q 010876 147 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV-RDLQKGVEIVIATPG 225 (498)
Q Consensus 147 ~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Ivi~T~~ 225 (498)
|++|++.++... ...++++||++|+++|+.|+++.+.++....++.+..++++....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988642 234678999999999999999999999888888887776654321111 122346799999999
Q ss_pred HHHHHHhcc--CcccccccEEEeccchhhhc---CCcHHHHHHHHHhc-CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEE
Q 010876 226 RLIDMLESH--NTNLRRVTYLVLDEADRMLD---MGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKV 299 (498)
Q Consensus 226 ~l~~~l~~~--~~~l~~~~~vI~DE~h~~~~---~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 299 (498)
+|.+++... ...+.++++||+||||++.+ .+|...+..++..+ .+..|+++||||+|+++..+++.++.+|..+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 999998876 46788999999999999998 56888888888766 4578999999999999999999999999998
Q ss_pred EEcCC
Q 010876 300 IIGSP 304 (498)
Q Consensus 300 ~~~~~ 304 (498)
.++..
T Consensus 239 ~~~~~ 243 (245)
T 3dkp_A 239 SIGAR 243 (245)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 87653
No 58
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.8e-36 Score=310.83 Aligned_cols=328 Identities=17% Similarity=0.216 Sum_probs=225.2
Q ss_pred CCCcHHHHHHHHHhh----cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 114 FEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
..|+|||.++++++. .+.++|++++||+|||++++. ++..+... +...++|||||+ +|+.||.+++.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 379999999998874 577899999999999998655 44444432 124569999995 6899999999999
Q ss_pred cCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcC
Q 010876 190 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 269 (498)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~ 269 (498)
.+. +++..+.++... ......+|+|+||+++..... .....+++||+||||++.+.. ....+.+..+
T Consensus 109 ~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l- 175 (500)
T 1z63_A 109 APH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL- 175 (500)
T ss_dssp CTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS-
T ss_pred CCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh-
Confidence 764 556655555422 112457999999999865432 233468899999999998764 2334455555
Q ss_pred CCCcEEEEcCCCcH----HHHHHHH---------------------------------HHhcCCeEEEEcCCC----ccc
Q 010876 270 PDRQTLYWSATWPK----EVEHLAR---------------------------------QYLYNPYKVIIGSPD----LKA 308 (498)
Q Consensus 270 ~~~~~i~~SAT~~~----~~~~~~~---------------------------------~~~~~~~~~~~~~~~----~~~ 308 (498)
+..+.+++|||+.. ++..++. .++ .+..+.....+ ...
T Consensus 176 ~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~l 254 (500)
T 1z63_A 176 KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDL 254 (500)
T ss_dssp CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTS
T ss_pred ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcC
Confidence 35678999999832 1111111 111 12221111000 000
Q ss_pred ccceeeeEee--------------------------------------------------------cchhhhHHHHHHHH
Q 010876 309 NHAIRQHVDI--------------------------------------------------------VSESQKYNKLVKLL 332 (498)
Q Consensus 309 ~~~~~~~~~~--------------------------------------------------------~~~~~k~~~l~~~l 332 (498)
+......+.+ .....|...+.+++
T Consensus 255 p~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 255 PDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 0001110000 11234556666666
Q ss_pred Hhhc-CCCeEEEEeCCcccHHHHHHHHhhC-CCCeEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEeccccccCCCCCCC
Q 010876 333 EDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAG-KSP-IMTATDVAARGLDVKDVK 408 (498)
Q Consensus 333 ~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~r~~~~~~f~~g-~~~-vLvaT~~~~~Gldi~~v~ 408 (498)
.+.. .+.++||||+++..++.++..|... ++.+..+||+++..+|+.+++.|+++ ..+ +|++|+++++|+|++.++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 6643 4569999999999999999999875 89999999999999999999999988 565 789999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCC
Q 010876 409 YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 462 (498)
Q Consensus 409 ~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 462 (498)
+||++|+|||+..|.||+||++|.|+...++++..-.....-+.+.+.+.++..
T Consensus 415 ~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~ 468 (500)
T 1z63_A 415 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRS 468 (500)
T ss_dssp EEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSS
T ss_pred EEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776554333333334555555555443
No 59
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=7.9e-36 Score=278.94 Aligned_cols=207 Identities=46% Similarity=0.712 Sum_probs=189.6
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEE
Q 010876 90 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 169 (498)
Q Consensus 90 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 169 (498)
.+..+|+++++++.+.+.+...|+..|+++|.++++.+++++++++++|||+|||++|++|++..+.... .++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~~ 114 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLFA 114 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSCE
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCceE
Confidence 3467899999999999999999999999999999999999999999999999999999999998887632 35679
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc-cCcccccccEEEecc
Q 010876 170 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDE 248 (498)
Q Consensus 170 lvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~-~~~~l~~~~~vI~DE 248 (498)
||++|+++|+.|+++.+.++....++.+..++|+.....+...+..+++|+|+||++|.+++.+ ....+.++++||+||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999999988888999999999887777777788899999999999998876 456788999999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEE
Q 010876 249 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII 301 (498)
Q Consensus 249 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 301 (498)
||++.+++|...+..++..+++..|+++||||+++++.++++.++.+|..+.+
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999989999999999999999999999999987754
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.3e-35 Score=274.45 Aligned_cols=210 Identities=31% Similarity=0.486 Sum_probs=182.2
Q ss_pred cCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 010876 85 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 164 (498)
Q Consensus 85 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 164 (498)
++..|.+..+|+++++++.+.+.+.+.||..|+++|.++++.+++++++++++|||+|||++|++|++..+... .
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----N 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----S
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 55667788899999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhcCCC-CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccE
Q 010876 165 DGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 243 (498)
Q Consensus 165 ~~~~vlvl~P~~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~ 243 (498)
.++++||++|+++|+.|+++.+.++.... ++++..++|+.....+...+ .+++|+|+||++|.+++......+.++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 36789999999999999999999997654 78888888887765554444 46899999999999999888778899999
Q ss_pred EEeccchhhhcCC-cHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEE
Q 010876 244 LVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 300 (498)
Q Consensus 244 vI~DE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 300 (498)
||+||||++.+++ |...+..++..++...|++++|||+++++.+++..++.+|..+.
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 9999999999987 99999999999988999999999999999999999998887664
No 61
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.6e-35 Score=267.95 Aligned_cols=202 Identities=33% Similarity=0.576 Sum_probs=184.8
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010876 93 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 172 (498)
Q Consensus 93 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl 172 (498)
.+|+++++++.+++.+.+.|+.+|+++|.++++.+++++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999886542 236789999
Q ss_pred cCcHHHHHHHHHHHHHhcCCC-CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh
Q 010876 173 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 251 (498)
Q Consensus 173 ~P~~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~ 251 (498)
+|+++|+.|+++.+.++.... ++.+..++|+.........+..+++|+|+||+++.+.+.+....+.++++||+||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999998766 7888899998877777777778899999999999999988877889999999999999
Q ss_pred hhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEE
Q 010876 252 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV 299 (498)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 299 (498)
+.+.+|...+..++..+++..|+++||||+|+++.++++.++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999998899999999999999999999999888754
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=6e-36 Score=274.78 Aligned_cols=207 Identities=35% Similarity=0.581 Sum_probs=184.3
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 171 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlv 171 (498)
..+|+++++++.+.+.+.+.|+.+|+++|.++++.+++++++++++|||+|||++|++|++..+... ..++++||
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~li 77 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAVI 77 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEEE
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999887642 23678999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCC----CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEec
Q 010876 172 LAPTRELAVQIQQESTKFGASS----KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 247 (498)
Q Consensus 172 l~P~~~La~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~D 247 (498)
++|+++|+.|+++.+.++.... ++.+..++|+.........+..+++|+|+||+++.+++......+.++++||+|
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 9999999999999999987765 678888888876544444445578999999999999998877788999999999
Q ss_pred cchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcC
Q 010876 248 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 303 (498)
Q Consensus 248 E~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 303 (498)
|||++.+++|...+..++..+++..|+++||||+++++.++++.++.+|..+.+..
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999999988999999999999999999999999998876544
No 63
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=282.36 Aligned_cols=215 Identities=29% Similarity=0.445 Sum_probs=187.1
Q ss_pred CceEecCCCCCC---cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCchHHHHHHHHHHHH
Q 010876 80 EITVEGRDVPKP---VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVH 154 (498)
Q Consensus 80 ~i~~~~~~~~~~---~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~i~~a~TGsGKT~~~~l~~l~~ 154 (498)
.+.+.+.+.+.| ..+|+++++++.+++.+..+||..|+++|.++|+.++.+ +++++++|||||||++|++|++.+
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~ 155 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence 344555555444 578999999999999999999999999999999999987 899999999999999999999998
Q ss_pred HhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC-CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc
Q 010876 155 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES 233 (498)
Q Consensus 155 ~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~ 233 (498)
+... ..++++|||+||++||.|+++.+.+++... ++.+...+++....... ..+++|+|+||++|.+++.+
T Consensus 156 l~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~ 227 (300)
T 3fmo_B 156 VEPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSK 227 (300)
T ss_dssp CCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTT
T ss_pred hhcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHh
Confidence 7653 246789999999999999999999988654 67888888877654322 45679999999999999966
Q ss_pred -cCcccccccEEEeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEc
Q 010876 234 -HNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 302 (498)
Q Consensus 234 -~~~~l~~~~~vI~DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 302 (498)
....+.++++|||||||++.+ .+|...+..++..+++.+|+++||||+++++..+++.++.+|..+.+.
T Consensus 228 ~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 228 LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp TCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred cCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 556789999999999999998 689999999999999999999999999999999999999999988764
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.4e-35 Score=271.89 Aligned_cols=213 Identities=30% Similarity=0.525 Sum_probs=183.9
Q ss_pred cCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCC
Q 010876 85 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 164 (498)
Q Consensus 85 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 164 (498)
....++++.+|+++++++.+++.+.+.|+..|+++|.++++.+++++++++++|||+|||++|++|++..+... .
T Consensus 6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~ 80 (224)
T 1qde_A 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----V 80 (224)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----C
T ss_pred ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----C
Confidence 34567778999999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEE
Q 010876 165 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 244 (498)
Q Consensus 165 ~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~v 244 (498)
.++++||++|+++|+.|+++.+.++....++.+..++|+.........+.. ++|+|+||++|.+.+.+....+.++++|
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~i 159 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMF 159 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEE
Confidence 367899999999999999999999988888999999998876655555444 8999999999999998888888999999
Q ss_pred EeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcC
Q 010876 245 VLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 303 (498)
Q Consensus 245 I~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 303 (498)
|+||||++.+++|...+..++..+++..|+++||||+++++.++++.++.+|..+.+..
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999998776544
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=7.7e-36 Score=312.73 Aligned_cols=273 Identities=19% Similarity=0.143 Sum_probs=203.6
Q ss_pred HHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 010876 125 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 204 (498)
Q Consensus 125 ~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~ 204 (498)
...+++++++++||||||||+. ++..+... +..+|++|+++||.|+++.+.+. ++.+..++|+.
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~----al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~ 213 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYH----AIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEE 213 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHH----HHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSC
T ss_pred HHhcCCCEEEEEcCCCCCHHHH----HHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCe
Confidence 3456888999999999999983 34444431 23599999999999999999886 46777788775
Q ss_pred CCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcC-CCCcEEEEcCCCcH
Q 010876 205 PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-PDRQTLYWSATWPK 283 (498)
Q Consensus 205 ~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~ 283 (498)
.... .......+++++|++.+. ....+++||+||+|++.+.+|+..+..++..++ ...+++++|||.+
T Consensus 214 ~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~- 282 (677)
T 3rc3_A 214 RVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID- 282 (677)
T ss_dssp EECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-
T ss_pred eEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-
Confidence 4310 000112578888875541 246789999999999999999999999998887 7889999999953
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCC
Q 010876 284 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW 363 (498)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~ 363 (498)
.+..+.... .....+...... .......... ..+... ....+|||+++++++.+++.|+..++
T Consensus 283 ~i~~l~~~~-~~~~~v~~~~r~----~~l~~~~~~l----------~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g~ 345 (677)
T 3rc3_A 283 LVMELMYTT-GEEVEVRDYKRL----TPISVLDHAL----------ESLDNL--RPGDCIVCFSKNDIYSVSRQIEIRGL 345 (677)
T ss_dssp HHHHHHHHH-TCCEEEEECCCS----SCEEECSSCC----------CSGGGC--CTTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc-CCceEEEEeeec----chHHHHHHHH----------HHHHhc--CCCCEEEEcCHHHHHHHHHHHHhcCC
Confidence 344444433 334333221110 0000000000 011121 23458899999999999999999999
Q ss_pred CeEEecCCCCHHHHHHHHHHHhc--CCCcEEEEeccccccCCCCCCCEEEEcCC--------------CCChhHHHHhhc
Q 010876 364 PALSIHGDKSQAERDWVLSEFKA--GKSPIMTATDVAARGLDVKDVKYVINYDF--------------PGSLEDYVHRIG 427 (498)
Q Consensus 364 ~~~~lh~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~~~--------------p~s~~~~~Qr~G 427 (498)
.+..+||+|++++|..+++.|++ |+++|||||+++++|||+ ++++||+++. |.+..+|+||+|
T Consensus 346 ~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~G 424 (677)
T 3rc3_A 346 ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAG 424 (677)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHT
T ss_pred CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhc
Confidence 99999999999999999999999 889999999999999999 9999999998 789999999999
Q ss_pred ccccCCCc---ceEEEEe
Q 010876 428 RTGRAGAK---GTAYTFF 442 (498)
Q Consensus 428 R~~R~g~~---g~~~~~~ 442 (498)
||||.|.. |.|+.+.
T Consensus 425 RAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 425 RAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp TBTCTTSSCSSEEEEESS
T ss_pred CCCCCCCCCCCEEEEEEe
Confidence 99999965 5555443
No 66
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=271.65 Aligned_cols=212 Identities=35% Similarity=0.547 Sum_probs=187.4
Q ss_pred CCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010876 89 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 168 (498)
Q Consensus 89 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 168 (498)
++++.+|+++++++.+.+.+.+.++..|+++|.++++.+++++++++++|||+|||++|++|++..+..... ....+++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~~~~ 99 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-TSTDGLG 99 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-cccCCce
Confidence 456788999999999999999999999999999999999999999999999999999999999988865321 1123678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc-CcccccccEEEec
Q 010876 169 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLD 247 (498)
Q Consensus 169 vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~-~~~l~~~~~vI~D 247 (498)
+||++|+++|+.|+.+.+.+++...++.+..++|+.........+ .+++|+|+||++|.+.+... ...+.++++||+|
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 178 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLD 178 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEET
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEe
Confidence 999999999999999999999988889999999988776665554 57899999999999888764 4667899999999
Q ss_pred cchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEc
Q 010876 248 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 302 (498)
Q Consensus 248 E~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 302 (498)
|||++.+++|...+..++..+++..|+++||||+++.+..+++.++.+|..+.+.
T Consensus 179 Eah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 179 EADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp THHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999877654
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=8.7e-35 Score=264.67 Aligned_cols=204 Identities=43% Similarity=0.699 Sum_probs=185.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010876 94 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 173 (498)
Q Consensus 94 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~ 173 (498)
+|+++++++.+.+.+.+.++..|+++|.++++.+++++++++++|||+|||++|++|++..+.... ....++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999998876532 123467899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhh
Q 010876 174 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 253 (498)
Q Consensus 174 P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~ 253 (498)
|+++|+.|+++.+.++... +++..++|+.........+..+++|+|+||+++.+++......+.++++||+||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999999998765 67888899888877777777889999999999999998877888999999999999999
Q ss_pred cCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEE
Q 010876 254 DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII 301 (498)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 301 (498)
+.+|...+..++..+++..|++++|||+++++.++++.++.+|..+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999987654
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=9e-35 Score=273.90 Aligned_cols=204 Identities=38% Similarity=0.592 Sum_probs=180.6
Q ss_pred CCcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010876 93 KSFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 170 (498)
Q Consensus 93 ~~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 170 (498)
.+|++++ +++.+++.+...||.+|+++|.++++.++.++++++++|||||||++|++|++..+...... ...++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEE
Confidence 4566666 99999999999999999999999999999999999999999999999999999988764321 12367799
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhcc-CcccccccEEEeccc
Q 010876 171 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEA 249 (498)
Q Consensus 171 vl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~-~~~l~~~~~vI~DE~ 249 (498)
|++||++||.|+++.+.++....++.+..++|+.....+...+..+++|+|+||+++.+++... ...+.++++||+|||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999999988889999999998887777777788999999999999887764 367889999999999
Q ss_pred hhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCe
Q 010876 250 DRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPY 297 (498)
Q Consensus 250 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 297 (498)
|++.+++|...+..++..+++..|+++||||+++++..+++.++.++.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999998887554
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-34 Score=310.09 Aligned_cols=397 Identities=15% Similarity=0.213 Sum_probs=262.6
Q ss_pred CCCCCCCcccccccccCccccCCCHHHHHHHHHhcCceEec---CCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHH
Q 010876 45 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEG---RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQA 121 (498)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~~~---~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~ 121 (498)
..|..| +++...|.....+.....+.++.|.........+ ...+.....|..+...+... .-.+|+|||.
T Consensus 170 vKW~~L-~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~ 242 (800)
T 3mwy_W 170 VKWRRL-NYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDFQL 242 (800)
T ss_dssp EEETTS-CSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTHHH
T ss_pred EEecCC-CcccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHHHH
Confidence 445566 4566666666666667788888887653322111 11122223344443322221 1248999999
Q ss_pred HHHHHhh----cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceE
Q 010876 122 QGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 197 (498)
Q Consensus 122 ~~i~~~l----~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~ 197 (498)
+++.+++ .+.++|++++||+|||++++..+...+... .....+||||| .+|+.||.+++.++.+. +.+
T Consensus 243 egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~~p~--~~v 314 (800)
T 3mwy_W 243 TGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKWAPD--LNC 314 (800)
T ss_dssp HHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHHSTT--CCE
T ss_pred HHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHHCCC--ceE
Confidence 9998876 688999999999999998666444333221 11344899999 57889999999999754 566
Q ss_pred EEEeCCCCCchhHHHH------------hcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHH
Q 010876 198 TCIYGGVPKGPQVRDL------------QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 265 (498)
Q Consensus 198 ~~~~~~~~~~~~~~~~------------~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~ 265 (498)
.+++|........... ....+|+|+|++.+...... +....+++||+||||++.+.. ......+
T Consensus 315 ~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~l 390 (800)
T 3mwy_W 315 ICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYESL 390 (800)
T ss_dssp EECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHHH
Confidence 6666655433333221 23468999999998664322 112367899999999997653 3444555
Q ss_pred HhcCCCCcEEEEcCCC----cHHHHHHHHHHhcCC-----------------------------eEEEEcCCCcc--ccc
Q 010876 266 SQIRPDRQTLYWSATW----PKEVEHLARQYLYNP-----------------------------YKVIIGSPDLK--ANH 310 (498)
Q Consensus 266 ~~~~~~~~~i~~SAT~----~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~--~~~ 310 (498)
..+ .....+++|||+ ..++..++..+.... ..+........ .+.
T Consensus 391 ~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~ 469 (800)
T 3mwy_W 391 NSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPS 469 (800)
T ss_dssp TTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCC
T ss_pred HHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCC
Confidence 555 456679999997 222333332221111 11000000000 000
Q ss_pred ceeeeEe-------------------------------------------------------------------------
Q 010876 311 AIRQHVD------------------------------------------------------------------------- 317 (498)
Q Consensus 311 ~~~~~~~------------------------------------------------------------------------- 317 (498)
.....+.
T Consensus 470 k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~ 549 (800)
T 3mwy_W 470 KTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLR 549 (800)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHH
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHH
Confidence 0000000
Q ss_pred -ecchhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCC---cEE
Q 010876 318 -IVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS---PIM 392 (498)
Q Consensus 318 -~~~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~---~vL 392 (498)
.+..+.|...|..++..+. .+.++||||+....++.|...|...++++..+||+++..+|+.+++.|+++.. .+|
T Consensus 550 ~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~L 629 (800)
T 3mwy_W 550 GLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFL 629 (800)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEE
T ss_pred HhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEE
Confidence 0012446667777777654 35699999999999999999999999999999999999999999999998654 489
Q ss_pred EEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhC
Q 010876 393 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG 461 (498)
Q Consensus 393 vaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 461 (498)
++|.++++|||++.+++||++|+|||+..+.||+||++|.|+...+.++..-.....-+.+.+.++++.
T Consensus 630 lSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 630 LSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp EEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred EecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876655443333334445555555543
No 70
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=6e-33 Score=282.75 Aligned_cols=319 Identities=21% Similarity=0.235 Sum_probs=238.2
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 010876 112 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 191 (498)
Q Consensus 112 ~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~ 191 (498)
|+ .|++.|.-+.-.+.+|+ |+.+.||+|||++|.+|++...+. |..|.||+|++.||.|-++++..+..
T Consensus 73 g~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~ 141 (822)
T 3jux_A 73 GM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYL 141 (822)
T ss_dssp SC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHH
Confidence 44 79999999988887776 999999999999999999877665 56699999999999999999999999
Q ss_pred CCCceEEEEeCCC------------------------------------------------CCchhHHHHhcCCcEEEcC
Q 010876 192 SSKIKSTCIYGGV------------------------------------------------PKGPQVRDLQKGVEIVIAT 223 (498)
Q Consensus 192 ~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~Ivi~T 223 (498)
.+++.+.+++... ......+.-.-.|+|+.+|
T Consensus 142 ~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgT 221 (822)
T 3jux_A 142 FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGT 221 (822)
T ss_dssp HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEE
T ss_pred HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEcc
Confidence 9999999998721 0011112222347999999
Q ss_pred hHHHH-HHHhcc------CcccccccEEEeccchhhhcC-------------C---cH----------------------
Q 010876 224 PGRLI-DMLESH------NTNLRRVTYLVLDEADRMLDM-------------G---FE---------------------- 258 (498)
Q Consensus 224 ~~~l~-~~l~~~------~~~l~~~~~vI~DE~h~~~~~-------------~---~~---------------------- 258 (498)
..-|- ++|... ......+.+.|+||+|.++=. . ..
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~ 301 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKA 301 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSS
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEccc
Confidence 87752 344322 223466899999999975500 0 00
Q ss_pred ----------HHHHH------------------HHHhc------------------------------------------
Q 010876 259 ----------PQIKK------------------ILSQI------------------------------------------ 268 (498)
Q Consensus 259 ----------~~~~~------------------i~~~~------------------------------------------ 268 (498)
..++. +...+
T Consensus 302 ~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQa 381 (822)
T 3jux_A 302 RTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQA 381 (822)
T ss_dssp SCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHH
T ss_pred CeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHH
Confidence 00111 10000
Q ss_pred -------------------------CCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceee-eEeecchh
Q 010876 269 -------------------------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQ-HVDIVSES 322 (498)
Q Consensus 269 -------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 322 (498)
+.-.++.+||+|...+..++.+.|..+ .+.+.. . .....+.+ .+......
T Consensus 382 iEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPt-n-kp~~R~d~~d~vy~t~~ 457 (822)
T 3jux_A 382 IEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPT-H-KPMIRKDHDDLVFRTQK 457 (822)
T ss_dssp HHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCC-S-SCCCCEECCCEEESSHH
T ss_pred HHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECC-C-CCcceeecCcEEEecHH
Confidence 001368999999988887777766543 222222 1 12222222 34456778
Q ss_pred hhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q 010876 323 QKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 401 (498)
Q Consensus 323 ~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 401 (498)
+|...+...+.+.. .+.++||||+|+..++.++..|+..|+++..+||+..+.++..+...++.| .|+|||++++||
T Consensus 458 eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRG 535 (822)
T 3jux_A 458 EKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRG 535 (822)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTT
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCC
Confidence 89999999887753 567999999999999999999999999999999996555555555666655 699999999999
Q ss_pred CCCC--------CCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccH
Q 010876 402 LDVK--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 447 (498)
Q Consensus 402 ldi~--------~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 447 (498)
+||+ +..+||+++.|.|...|.||+||+||.|.+|.+++|++..|.
T Consensus 536 tDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 536 TDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred cCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 9998 566999999999999999999999999999999999998874
No 71
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.3e-34 Score=264.44 Aligned_cols=207 Identities=28% Similarity=0.524 Sum_probs=181.1
Q ss_pred CCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010876 89 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 168 (498)
Q Consensus 89 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 168 (498)
+....+|+++++++.+.+.+...++..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..+++
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 84 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVS 84 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCC
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEE
Confidence 3345679999999999999999999999999999999999999999999999999999999999876542 23567
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCC-CceEEEEeCCCCCchhHHHHhc-CCcEEEcChHHHHHHHhccCcccccccEEEe
Q 010876 169 VLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVL 246 (498)
Q Consensus 169 vlvl~P~~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~ 246 (498)
+||++|+++|+.|+++.+.++.... ++++..++|+.....+...+.. .++|+|+||+++.+++......+.++++||+
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 9999999999999999999998765 7889999998876666655554 4699999999999999888778899999999
Q ss_pred ccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCeEEE
Q 010876 247 DEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 300 (498)
Q Consensus 247 DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 300 (498)
||||++.+ .+|...+..++..+++..|++++|||+++++.++++.++.+|..+.
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999987 4788889999998888999999999999999999999999988664
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-33 Score=296.12 Aligned_cols=323 Identities=18% Similarity=0.201 Sum_probs=220.8
Q ss_pred CCcHHHHHHHHHhh---------cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 010876 115 EPTPIQAQGWPMAL---------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 185 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l---------~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~ 185 (498)
.|+|||.+++.++. .+..+|+.++||+|||++++..+...+...+ .......++|||||+ +|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~-~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP-DCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT-TSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCc-cccCCCCcEEEEecH-HHHHHHHHH
Confidence 79999999999874 3456999999999999997665544443322 112224569999997 899999999
Q ss_pred HHHhcCCCCceEEEEeCCCCCch--hHHHHh------cCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc
Q 010876 186 STKFGASSKIKSTCIYGGVPKGP--QVRDLQ------KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 257 (498)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~ 257 (498)
+.++... .+.+..++++..... ...... ...+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-
Confidence 9998755 455666666543211 111111 136899999999876532 2334578899999999998764
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCcHH----HH---------------HH------------------------------
Q 010876 258 EPQIKKILSQIRPDRQTLYWSATWPKE----VE---------------HL------------------------------ 288 (498)
Q Consensus 258 ~~~~~~i~~~~~~~~~~i~~SAT~~~~----~~---------------~~------------------------------ 288 (498)
......+..+ ...+.+++|||+-.+ +. .+
T Consensus 209 -~~~~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 2233344445 356789999997221 00 00
Q ss_pred ----HHHHh------------cCCeEEEE--cCCCcc-----------------cccce---------------------
Q 010876 289 ----ARQYL------------YNPYKVII--GSPDLK-----------------ANHAI--------------------- 312 (498)
Q Consensus 289 ----~~~~~------------~~~~~~~~--~~~~~~-----------------~~~~~--------------------- 312 (498)
+..++ .......+ ...... .....
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 00000 00000000 000000 00000
Q ss_pred ------------------ee----eEeecchhhhHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEe
Q 010876 313 ------------------RQ----HVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSI 368 (498)
Q Consensus 313 ------------------~~----~~~~~~~~~k~~~l~~~l~~~~--~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~l 368 (498)
.. .......+.|...+..++.... .+.++||||++...++.++..|...++.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 00 0000012345555555555542 46799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCc---EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEE--Eec
Q 010876 369 HGDKSQAERDWVLSEFKAGKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT--FFT 443 (498)
Q Consensus 369 h~~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~ 443 (498)
||+++..+|+.+++.|+++... +|++|+++++|+|++.+++||++|+|||+..|.|++||++|.|+...+++ |++
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~ 526 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 526 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEE
Confidence 9999999999999999998654 88999999999999999999999999999999999999999998875554 455
Q ss_pred cc
Q 010876 444 AA 445 (498)
Q Consensus 444 ~~ 445 (498)
..
T Consensus 527 ~~ 528 (644)
T 1z3i_X 527 TG 528 (644)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1e-32 Score=300.77 Aligned_cols=311 Identities=14% Similarity=0.110 Sum_probs=211.7
Q ss_pred CCcHHHHHHHHHhhc--------------CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 010876 115 EPTPIQAQGWPMALK--------------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 180 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~--------------~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~ 180 (498)
.|+|+|.+|++.++. +++++++++||||||+++ ++++..+... +..+++|||+|+++|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCCH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHHH
Confidence 599999999999875 367999999999999997 5566544331 23468999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHh-cCCcEEEcChHHHHHHHhccC--cccccccEEEeccchhhhcCCc
Q 010876 181 QIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMGF 257 (498)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivi~T~~~l~~~l~~~~--~~l~~~~~vI~DE~h~~~~~~~ 257 (498)
|+.+.+.+|.... +.++.+.......+. .+.+|+|+||++|..++.... ..+..+.+||+||||++..
T Consensus 345 Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--- 415 (1038)
T 2w00_A 345 QTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--- 415 (1038)
T ss_dssp HHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---
T ss_pred HHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---
Confidence 9999999987531 234444444555553 468999999999998876432 2456788999999999763
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCcHHHH----HHHHHHhcC-----------------CeEEEEcCCCccc--------
Q 010876 258 EPQIKKILSQIRPDRQTLYWSATWPKEVE----HLARQYLYN-----------------PYKVIIGSPDLKA-------- 308 (498)
Q Consensus 258 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~----~~~~~~~~~-----------------~~~~~~~~~~~~~-------- 308 (498)
......+...++ +.++++||||+..... .....++.+ |..+.........
T Consensus 416 ~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d 494 (1038)
T 2w00_A 416 GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETD 494 (1038)
T ss_dssp HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCC
T ss_pred hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccccc
Confidence 334556666664 5899999999864221 011112222 2222111100000
Q ss_pred ---ccceeeeEeecchhhhHHHHHHHH-H---hhc-------CCCeEEEEeCCcccHHHHHHHHhhCC------------
Q 010876 309 ---NHAIRQHVDIVSESQKYNKLVKLL-E---DIM-------DGSRILIFMDTKKGCDQITRQLRMDG------------ 362 (498)
Q Consensus 309 ---~~~~~~~~~~~~~~~k~~~l~~~l-~---~~~-------~~~~vlIf~~s~~~~~~l~~~L~~~~------------ 362 (498)
...+.+. .......+...+...+ . ... .+.++||||+++.+|..+++.|...+
T Consensus 495 ~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~ 573 (1038)
T 2w00_A 495 EKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKP 573 (1038)
T ss_dssp HHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccccc
Confidence 0000000 0011222333333322 2 111 23589999999999999999997643
Q ss_pred CCeE-EecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcEE
Q 010876 363 WPAL-SIHGD----------K----------SQ-----------------------------AERDWVLSEFKAGKSPIM 392 (498)
Q Consensus 363 ~~~~-~lh~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~vL 392 (498)
+++. ++|++ + ++ .+|..++++|++|+++||
T Consensus 574 ~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~IL 653 (1038)
T 2w00_A 574 LRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLL 653 (1038)
T ss_dssp CCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred CcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEE
Confidence 4554 45542 2 22 147889999999999999
Q ss_pred EEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCc----ceEEEEec
Q 010876 393 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK----GTAYTFFT 443 (498)
Q Consensus 393 vaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~----g~~~~~~~ 443 (498)
|+|+++.+|+|+|.+ .++++|.|.+...|+|++||++|.+.. |.++.|..
T Consensus 654 Ivvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 654 IVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999999 678899999999999999999998753 55665554
No 74
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=231.94 Aligned_cols=181 Identities=37% Similarity=0.549 Sum_probs=151.1
Q ss_pred HHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEec
Q 010876 290 RQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIH 369 (498)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh 369 (498)
..++.+|..+.+.... .....+.+.+..+....|...|.+++... ..++||||+++..++.+++.|+..++.+..+|
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 4567778777776554 45677888888899999999999998864 45899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccc-cHH
Q 010876 370 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NAR 448 (498)
Q Consensus 370 ~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~ 448 (498)
|++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++. +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999976 788
Q ss_pred HHHHHHHHHHHhCCCCCHHHHhhhc
Q 010876 449 FAKELITILEEAGQKVSPELAAMGR 473 (498)
Q Consensus 449 ~~~~l~~~l~~~~~~~~~~l~~~~~ 473 (498)
.+..+.+.++..++.+|+.|.+|++
T Consensus 166 ~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 166 VLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred HHHHHHHHHHHccCcCCHHHHhhcC
Confidence 9999999999999999999999875
No 75
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.97 E-value=3.1e-30 Score=229.21 Aligned_cols=168 Identities=46% Similarity=0.707 Sum_probs=145.1
Q ss_pred ccccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhc
Q 010876 307 KANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 386 (498)
Q Consensus 307 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~ 386 (498)
.....+.+.+..+....|...|.+++.......++||||+++..++.++..|+..++.+..+||++++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45667899999999999999999999987667799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCH
Q 010876 387 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSP 466 (498)
Q Consensus 387 g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 466 (498)
|+++|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++|+++.+...+..+.+.+....+++|+
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcC
Q 010876 467 ELAAMGRG 474 (498)
Q Consensus 467 ~l~~~~~~ 474 (498)
+|.+|+..
T Consensus 175 ~l~~~a~~ 182 (185)
T 2jgn_A 175 WLENMAYE 182 (185)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99999865
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=2.1e-28 Score=253.89 Aligned_cols=318 Identities=19% Similarity=0.226 Sum_probs=235.9
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 111 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 111 ~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.|+ .|+++|..+++.+++|+ |+.+.||+|||++|.+|++..... +..++|++||++||.|.++++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 688 99999999999999998 999999999999999999765553 4569999999999999999999999
Q ss_pred CCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHH-HHHHhccC------cccc---cccEEEeccchhhhc-CCc--
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLR---RVTYLVLDEADRMLD-MGF-- 257 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l-~~~l~~~~------~~l~---~~~~vI~DE~h~~~~-~~~-- 257 (498)
..+++++.+++|+.+. +.+....+++|+|+||++| .+++.... ..++ .+.++|+||+|.|+. .+.
T Consensus 145 ~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartP 222 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTP 222 (997)
T ss_dssp HTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSC
T ss_pred HhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCC
Confidence 9999999999998763 4444556799999999999 78887652 4567 899999999998762 110
Q ss_pred -------------HHHHHHHHHhcCC------------------------------------------------------
Q 010876 258 -------------EPQIKKILSQIRP------------------------------------------------------ 270 (498)
Q Consensus 258 -------------~~~~~~i~~~~~~------------------------------------------------------ 270 (498)
...+..++..++.
T Consensus 223 LIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~ 302 (997)
T 2ipc_A 223 LIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAH 302 (997)
T ss_dssp EEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHH
T ss_pred eeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHH
Confidence 0111122211110
Q ss_pred ---------------------------------------------------------------------------CCcEE
Q 010876 271 ---------------------------------------------------------------------------DRQTL 275 (498)
Q Consensus 271 ---------------------------------------------------------------------------~~~~i 275 (498)
-..+.
T Consensus 303 ~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLs 382 (997)
T 2ipc_A 303 MLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRA 382 (997)
T ss_dssp HHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHhe
Confidence 02567
Q ss_pred EEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhh-cCCCeEEEEeCCcccHHHH
Q 010876 276 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQI 354 (498)
Q Consensus 276 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~~~~~~l 354 (498)
+||+|...+..++.+.|..+.+ .+.... .....-..........+|+..+.+.+.+. ..+.||||+|.|++..+.|
T Consensus 383 GMTGTA~tE~~Ef~~iY~l~Vv--~IPTn~-p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~L 459 (997)
T 2ipc_A 383 GMTGTAKTEEKEFQEIYGMDVV--VVPTNR-PVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERL 459 (997)
T ss_dssp EEESSCGGGHHHHHHHHCCCEE--ECCCSS-CCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHH
T ss_pred ecCCCchHHHHHHHHHhCCCEE--EcCCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHH
Confidence 8888887776666666655432 222221 11111122333456778888887766654 4567999999999999999
Q ss_pred HHHHh---------------------------------------------------------------------------
Q 010876 355 TRQLR--------------------------------------------------------------------------- 359 (498)
Q Consensus 355 ~~~L~--------------------------------------------------------------------------- 359 (498)
+..|+
T Consensus 460 S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (997)
T 2ipc_A 460 SQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAV 539 (997)
T ss_dssp HHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHH
Confidence 99998
Q ss_pred -hCCCCeEEecCCCCHHHHHHHHHHHhcCC-CcEEEEeccccccCCCCCC-------------------C----------
Q 010876 360 -MDGWPALSIHGDKSQAERDWVLSEFKAGK-SPIMTATDVAARGLDVKDV-------------------K---------- 408 (498)
Q Consensus 360 -~~~~~~~~lh~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldi~~v-------------------~---------- 408 (498)
+.+++..++++.-...+-+.+- +.|. -.|-|||++++||.||.-- .
T Consensus 540 ~~~gI~H~VLNAK~he~EAeIIA---qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (997)
T 2ipc_A 540 LRQGIPHQVLNAKHHAREAEIVA---QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKM 616 (997)
T ss_dssp HHHCCCCCEECSSSHHHHHHHHH---TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHH
T ss_pred HHcCCCeeeccccchHHHHHHHH---hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccc
Confidence 5677888888764332222222 2343 4599999999999998532 1
Q ss_pred ---------------------------------------------EEEEcCCCCChhHHHHhhcccccCCCcceEEEEec
Q 010876 409 ---------------------------------------------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 443 (498)
Q Consensus 409 ---------------------------------------------~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 443 (498)
+||-...+.|...-.|-.||+||.|.+|.+..|++
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LS 696 (997)
T 2ipc_A 617 VAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVS 696 (997)
T ss_dssp HHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEE
T ss_pred cccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEE
Confidence 78888889999999999999999999999998888
Q ss_pred cccH
Q 010876 444 AANA 447 (498)
Q Consensus 444 ~~~~ 447 (498)
-.|.
T Consensus 697 LeDd 700 (997)
T 2ipc_A 697 FDDD 700 (997)
T ss_dssp SSSH
T ss_pred CChH
Confidence 6653
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=3e-28 Score=257.15 Aligned_cols=176 Identities=19% Similarity=0.229 Sum_probs=134.5
Q ss_pred CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhh-cCCCeEEEEeCCc
Q 010876 270 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTK 348 (498)
Q Consensus 270 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~ 348 (498)
...|++++|||++...... ........+...... ...+.+.....+...++..+... ..+.++||||+++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~-----~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLL-----DPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCC-----CCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCC-----CCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3578999999998643221 111111111111100 01122223334555555555543 3567999999999
Q ss_pred ccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCC-----CCChhHHH
Q 010876 349 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF-----PGSLEDYV 423 (498)
Q Consensus 349 ~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~-----p~s~~~~~ 423 (498)
..++.+++.|...++++..+|+++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++. |.|..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HhhcccccCCCcceEEEEeccccHHHHHHHHH
Q 010876 424 HRIGRTGRAGAKGTAYTFFTAANARFAKELIT 455 (498)
Q Consensus 424 Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 455 (498)
||+||+||. ..|.+++|++..+..+...+.+
T Consensus 530 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARN-ARGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTS-TTCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999999 4899999999877655554443
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=2.3e-27 Score=250.31 Aligned_cols=175 Identities=20% Similarity=0.238 Sum_probs=135.0
Q ss_pred CCCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEeecchhhhHHHHHHHHHhh-cCCCeEEEEeCCc
Q 010876 270 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTK 348 (498)
Q Consensus 270 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlIf~~s~ 348 (498)
...|++++|||++...... ........+...... .. .+.+.....+...++..+... ..+.++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~-~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLL-DP----LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCC-CC----EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCC-CC----eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 4678999999997654222 111122211111111 01 122223334455555555544 3567999999999
Q ss_pred ccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcCC-----CCChhHHH
Q 010876 349 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF-----PGSLEDYV 423 (498)
Q Consensus 349 ~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~-----p~s~~~~~ 423 (498)
..|+.+++.|+..++++..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++. |.|..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HhhcccccCCCcceEEEEeccccHHHHHHHH
Q 010876 424 HRIGRTGRAGAKGTAYTFFTAANARFAKELI 454 (498)
Q Consensus 424 Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 454 (498)
||+||+||. ..|.|++|+++.+..+...+.
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 999999998 789999999987765554443
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=1.5e-27 Score=207.79 Aligned_cols=150 Identities=41% Similarity=0.611 Sum_probs=140.5
Q ss_pred cccceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC
Q 010876 308 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 387 (498)
Q Consensus 308 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g 387 (498)
....+.+.+..+....|...|.+++... ...++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3456888888899999999999999875 456899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHH
Q 010876 388 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILE 458 (498)
Q Consensus 388 ~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 458 (498)
+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++|+++.+...+..+.+.+.
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999988888887664
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=4.1e-28 Score=211.83 Aligned_cols=159 Identities=37% Similarity=0.628 Sum_probs=140.5
Q ss_pred ceeeeEeecchhh-hHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCC
Q 010876 311 AIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 389 (498)
Q Consensus 311 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~ 389 (498)
.+.+.+..+..++ |...|.+++... ...++||||+++..++.++..|+..++.+..+||++++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4667777777666 999999998875 45789999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHH
Q 010876 390 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELA 469 (498)
Q Consensus 390 ~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 469 (498)
+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++|+++.+...+..+.+.+....+++|..+.
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888877777776654
Q ss_pred h
Q 010876 470 A 470 (498)
Q Consensus 470 ~ 470 (498)
+
T Consensus 162 ~ 162 (165)
T 1fuk_A 162 T 162 (165)
T ss_dssp T
T ss_pred h
Confidence 4
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=9.1e-28 Score=210.85 Aligned_cols=160 Identities=29% Similarity=0.514 Sum_probs=142.8
Q ss_pred cceeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCC
Q 010876 310 HAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 389 (498)
Q Consensus 310 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~ 389 (498)
..+.+.+..+....|...|.+++... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 45778888888999999999999875 45689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccc-cHHHHHHHHHHHHHhCCCCCHHH
Q 010876 390 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPEL 468 (498)
Q Consensus 390 ~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~l 468 (498)
+|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+.+.....++|.++
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999876 56778888888777777777765
Q ss_pred Hh
Q 010876 469 AA 470 (498)
Q Consensus 469 ~~ 470 (498)
..
T Consensus 163 ~~ 164 (172)
T 1t5i_A 163 DI 164 (172)
T ss_dssp --
T ss_pred ch
Confidence 43
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=5.3e-27 Score=206.91 Aligned_cols=153 Identities=29% Similarity=0.525 Sum_probs=135.1
Q ss_pred ccceeeeEeecchhh-hHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC
Q 010876 309 NHAIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 387 (498)
Q Consensus 309 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g 387 (498)
...+.+.+..++... |...|.+++... ..+++||||+++.+|+.++..|...++.+..+||++++.+|..+++.|++|
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 456788887777655 999999988875 456999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccccccCCCCCCCEEEEcCCC------CChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhC
Q 010876 388 KSPIMTATDVAARGLDVKDVKYVINYDFP------GSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG 461 (498)
Q Consensus 388 ~~~vLvaT~~~~~Gldi~~v~~VI~~~~p------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 461 (498)
+++|||||+++++|+|+|++++||++|+| .+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+....
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 899999999999999999999999999999888888877765443
Q ss_pred C
Q 010876 462 Q 462 (498)
Q Consensus 462 ~ 462 (498)
.
T Consensus 164 ~ 164 (175)
T 2rb4_A 164 K 164 (175)
T ss_dssp E
T ss_pred c
Confidence 3
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=3.6e-26 Score=207.66 Aligned_cols=148 Identities=34% Similarity=0.530 Sum_probs=133.8
Q ss_pred eeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 010876 312 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 391 (498)
Q Consensus 312 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~v 391 (498)
+.+....++...|...|.+++... ..+++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|+++|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 344455567788999999998865 4579999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHh
Q 010876 392 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 460 (498)
Q Consensus 392 LvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 460 (498)
||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.++..
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999988888887776544
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.4e-25 Score=213.30 Aligned_cols=147 Identities=34% Similarity=0.529 Sum_probs=130.9
Q ss_pred eeeeEeecchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 010876 312 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 391 (498)
Q Consensus 312 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~v 391 (498)
+.+.+..+....|...|.+++.... .+++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+++|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4566777788899999999998764 679999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 010876 392 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 459 (498)
Q Consensus 392 LvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 459 (498)
||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999987777777665543
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=4.4e-25 Score=201.73 Aligned_cols=166 Identities=23% Similarity=0.222 Sum_probs=123.0
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHH-HHHHHHHhc
Q 010876 112 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ-IQQESTKFG 190 (498)
Q Consensus 112 ~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q-~~~~~~~~~ 190 (498)
...+|+++|.++++.++.++++++.+|||+|||++|+++++..+..... ...+.++||++|+++|+.| +.+.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4468999999999999999999999999999999999998877654210 1125679999999999999 888888887
Q ss_pred CCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccC------cccccccEEEeccchhhhcCCcHHHH-HH
Q 010876 191 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN------TNLRRVTYLVLDEADRMLDMGFEPQI-KK 263 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~------~~l~~~~~vI~DE~h~~~~~~~~~~~-~~ 263 (498)
.. ++.+..++|+.........+...++|+|+||++|.+.+.... ..+.++++||+||||++.+.++...+ ..
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 678888888877666666666678999999999999887643 55788999999999999876544443 33
Q ss_pred HHHhc-------------CCCCcEEEEcCC
Q 010876 264 ILSQI-------------RPDRQTLYWSAT 280 (498)
Q Consensus 264 i~~~~-------------~~~~~~i~~SAT 280 (498)
++... .+.+++++||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32221 167899999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=9e-27 Score=204.31 Aligned_cols=149 Identities=33% Similarity=0.535 Sum_probs=134.7
Q ss_pred ceeeeEeecch-hhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCC
Q 010876 311 AIRQHVDIVSE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 389 (498)
Q Consensus 311 ~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~ 389 (498)
.+.+.+..++. ..|...|.+++... ...++||||+++.+++.+++.|+..++.+..+||++++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 34556666666 77888888888764 45689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEEEEeccccHHHHHHHHHHHHHh
Q 010876 390 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 460 (498)
Q Consensus 390 ~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 460 (498)
+|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++|+++.+...+..+.+.+...
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 99999999999999999999999999999999999999999999999999999999888888887766544
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=9.6e-23 Score=210.99 Aligned_cols=300 Identities=18% Similarity=0.228 Sum_probs=168.7
Q ss_pred CCCCCcHHHHHHHHH----hhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 010876 112 GFFEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 187 (498)
Q Consensus 112 ~~~~~~~~Q~~~i~~----~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~ 187 (498)
++ +|+|+|.+++.. +..++++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+++.
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~~ 72 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNAK 72 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHHG
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 45 899999998654 4578999999999999999999998764 5679999999999999999988
Q ss_pred HhcCCCCceEEEEeCCCC--------Cc------------------------hh---------------HHHHhcCCcEE
Q 010876 188 KFGASSKIKSTCIYGGVP--------KG------------------------PQ---------------VRDLQKGVEIV 220 (498)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~--------~~------------------------~~---------------~~~~~~~~~Iv 220 (498)
++. +++..+.|... .. +. .+.....++||
T Consensus 73 ~l~----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiV 148 (540)
T 2vl7_A 73 LLG----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVI 148 (540)
T ss_dssp GGT----CCEEEC---------------------------------------------------------CTTGGGCSEE
T ss_pred hcC----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEE
Confidence 752 33433332210 00 00 01113457999
Q ss_pred EcChHHHHHHHhccCc-------ccccccEEEeccchhhhcCC-----------cHHH----------------------
Q 010876 221 IATPGRLIDMLESHNT-------NLRRVTYLVLDEADRMLDMG-----------FEPQ---------------------- 260 (498)
Q Consensus 221 i~T~~~l~~~l~~~~~-------~l~~~~~vI~DE~h~~~~~~-----------~~~~---------------------- 260 (498)
|+|+..|.+....... .+....++||||||++.+.. +...
T Consensus 149 V~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~ 228 (540)
T 2vl7_A 149 AMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYI 228 (540)
T ss_dssp EEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred EEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 9999999875443221 24577899999999874310 0000
Q ss_pred --------------------------------HHHHHHh-----------------------------------cCC---
Q 010876 261 --------------------------------IKKILSQ-----------------------------------IRP--- 270 (498)
Q Consensus 261 --------------------------------~~~i~~~-----------------------------------~~~--- 270 (498)
+..++.. +.|
T Consensus 229 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~ 308 (540)
T 2vl7_A 229 NLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDV 308 (540)
T ss_dssp HHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCH
T ss_pred HHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHH
Confidence 0000000 000
Q ss_pred ----------CCcEEEEcCCCcHHHHHHHHHHhcCCeEEEEcCCCcccccceeeeEe---ecc----hhhhHHHHHHHHH
Q 010876 271 ----------DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD---IVS----ESQKYNKLVKLLE 333 (498)
Q Consensus 271 ----------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~k~~~l~~~l~ 333 (498)
...+|++|||+++.. .+ .......+... . .....+. +.. .......+.+.+.
T Consensus 309 ~~~l~~~~~~~~~~IltSATL~p~~-~~-----~~~f~~~~~~~-~----g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~ 377 (540)
T 2vl7_A 309 NQLIEDALNVKTFKVLMSGTLPESL-TL-----TNSYKIVVNES-Y----GRGEYYYCPNVTSELRKRNSNIPIYSILLK 377 (540)
T ss_dssp HHHHHHHTCCSSCEEEEESSCCTTC-CC-----TTEEEEECCCC------CCCEEEECTTCCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccCCeEEEcccCCCCc-cc-----chhcCCchhhe-e----cCCcceeccccCCCcccccCHHHHHHHHHH
Confidence 011266666665410 00 00000000000 0 0000000 000 0001133444443
Q ss_pred hhc--CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE--EeccccccCCCCC---
Q 010876 334 DIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT--ATDVAARGLDVKD--- 406 (498)
Q Consensus 334 ~~~--~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLv--aT~~~~~Gldi~~--- 406 (498)
.+. ..+++|||++|...++.+++.|.. ++ ..+++.. .+|..+++.|+++. .||+ +|..+.+|||+|+
T Consensus 378 ~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~ 451 (540)
T 2vl7_A 378 RIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKEN 451 (540)
T ss_dssp HHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------
T ss_pred HHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcc
Confidence 322 346899999999999999998865 23 4556654 46788999999864 6777 7899999999997
Q ss_pred -CCEEEEcCCCCC-h-----------------------------hHHHHhhcccccCCCcceEEEEecc
Q 010876 407 -VKYVINYDFPGS-L-----------------------------EDYVHRIGRTGRAGAKGTAYTFFTA 444 (498)
Q Consensus 407 -v~~VI~~~~p~s-~-----------------------------~~~~Qr~GR~~R~g~~g~~~~~~~~ 444 (498)
+++||++++|.. + ..+.|.+||+-|...+--++++++.
T Consensus 452 ~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 452 LFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred cccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 889999998851 1 2345899999998666445556654
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=2.4e-24 Score=205.13 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=128.2
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
.+|+++|.++++.++.+.+.++++|||+|||++++.++...+... ..++||++|+++|+.||.+++.+++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 389999999999999888899999999999999988777665541 3479999999999999999999998777
Q ss_pred CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCc
Q 010876 194 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 273 (498)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~ 273 (498)
...+..++++..... ......+|+|+||+.+... ....+.++++||+||||++.+ ..+..++..+.+..+
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCe
Confidence 778888888875532 2224579999999987543 223467889999999999873 477888888878999
Q ss_pred EEEEcCCCcHHHH
Q 010876 274 TLYWSATWPKEVE 286 (498)
Q Consensus 274 ~i~~SAT~~~~~~ 286 (498)
+++||||+++...
T Consensus 255 ~l~lSATp~~~~~ 267 (282)
T 1rif_A 255 KFGLSGSLRDGKA 267 (282)
T ss_dssp EEEECSSCCTTST
T ss_pred EEEEeCCCCCcch
Confidence 9999999986543
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=3e-22 Score=185.18 Aligned_cols=181 Identities=14% Similarity=0.150 Sum_probs=131.2
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHH
Q 010876 103 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 182 (498)
Q Consensus 103 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~ 182 (498)
.+.+.+.......++++|.++++.+..+++++++|+||||||+++.++++....... ......+++++|+++|+.|+
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~---~~~~~~~l~~~p~~~la~q~ 125 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND---RAAECNIVVTQPRRISAVSV 125 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT---CGGGCEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC---CCCceEEEEeccchHHHHHH
Confidence 344444444455789999999999999999999999999999998888887766532 12245899999999999999
Q ss_pred HHHHHHhcC-CCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhh-hcCCcH-H
Q 010876 183 QQESTKFGA-SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-LDMGFE-P 259 (498)
Q Consensus 183 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~-~~~~~~-~ 259 (498)
.+.+..... ..+..+........ ......++|+|+||++|.+++.. .+.++++||+||+|++ .+.+|. .
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~ 197 (235)
T 3llm_A 126 AERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLV 197 (235)
T ss_dssp HHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHH
T ss_pred HHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHH
Confidence 988876432 33333322111110 00113478999999999998876 4789999999999985 666666 4
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHhcCCe
Q 010876 260 QIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPY 297 (498)
Q Consensus 260 ~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 297 (498)
.++.++... ++.|+++||||++.+. +.+.+...|+
T Consensus 198 ~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 198 VLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 556665554 6899999999999866 5555544443
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=1.8e-20 Score=194.74 Aligned_cols=309 Identities=17% Similarity=0.151 Sum_probs=199.0
Q ss_pred CCcHHHHHHHHH----hhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 115 ~~~~~Q~~~i~~----~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
+++|+|.+.+.. +..++++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+++.++.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 799999997764 4578999999999999999999999972 5789999999999999999999987
Q ss_pred CCCCceEEEEeCCCCC---------------------------------chhH------------------HHHhcCCcE
Q 010876 191 ASSKIKSTCIYGGVPK---------------------------------GPQV------------------RDLQKGVEI 219 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~I 219 (498)
...++++..+.|.... .... +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7777888877763210 0111 223456899
Q ss_pred EEcChHHHHHHHhccCccc-ccccEEEeccchhhhcCC------------------------------------------
Q 010876 220 VIATPGRLIDMLESHNTNL-RRVTYLVLDEADRMLDMG------------------------------------------ 256 (498)
Q Consensus 220 vi~T~~~l~~~l~~~~~~l-~~~~~vI~DE~h~~~~~~------------------------------------------ 256 (498)
||+|+..|.+...+....+ ....+|||||||++.+ .
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~ 230 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLP 230 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999988755443322 4678999999998765 1
Q ss_pred -------------cHHHHHHH----------------------------HH----------------------------h
Q 010876 257 -------------FEPQIKKI----------------------------LS----------------------------Q 267 (498)
Q Consensus 257 -------------~~~~~~~i----------------------------~~----------------------------~ 267 (498)
+...+..+ +. .
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~ 310 (551)
T 3crv_A 231 DEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNL 310 (551)
T ss_dssp CSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGG
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHH
Confidence 00000000 00 0
Q ss_pred cCCC-CcEEEEcCCCcHHHHHHHHHHhcC-CeEE---E--EcCCCcccccceeeeEee-cc---h---hhhHHHHHHHHH
Q 010876 268 IRPD-RQTLYWSATWPKEVEHLARQYLYN-PYKV---I--IGSPDLKANHAIRQHVDI-VS---E---SQKYNKLVKLLE 333 (498)
Q Consensus 268 ~~~~-~~~i~~SAT~~~~~~~~~~~~~~~-~~~~---~--~~~~~~~~~~~~~~~~~~-~~---~---~~k~~~l~~~l~ 333 (498)
+... ..+|++|||+.+ ...+.+.+..+ +... . +.++. ..+..-++.. .+ . ......+.+.+.
T Consensus 311 ~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf---~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~ 386 (551)
T 3crv_A 311 LNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV---SGSYECYIGVDVTSKYDMRSDNMWKRYADYLL 386 (551)
T ss_dssp GGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC---SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHH
T ss_pred HhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC---CCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 1123 688999999976 44444443333 2211 0 11111 1111111110 11 0 122344444444
Q ss_pred hhc--CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe--ccccccCCCC----
Q 010876 334 DIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT--DVAARGLDVK---- 405 (498)
Q Consensus 334 ~~~--~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT--~~~~~Gldi~---- 405 (498)
++. ..+.+|||++|....+.+++. .+.++..-..+++ +...++.|+...-.||+|| ..+.+|||+|
T Consensus 387 ~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 387 KIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp HHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTE
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCC
Confidence 422 345899999999999999873 3344443333445 3457778854445899998 6999999999
Q ss_pred -CCCEEEEcCCCCC------------------------------hhHHHHhhcccccCCCcceEEEEeccc
Q 010876 406 -DVKYVINYDFPGS------------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA 445 (498)
Q Consensus 406 -~v~~VI~~~~p~s------------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 445 (498)
.+..||...+|.. .....|.+||+-|...+--++++++..
T Consensus 461 ~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 461 SLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp ESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred cceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 3778888776641 111248999999987765566666654
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.82 E-value=9.8e-19 Score=183.00 Aligned_cols=317 Identities=18% Similarity=0.169 Sum_probs=190.7
Q ss_pred CCCcHHHHHHHHH----hhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 114 FEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 114 ~~~~~~Q~~~i~~----~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
.+|+|.|.+.+.. +..++++++.||||+|||++|++|++.++.. .+++++|++||++|+.|+.+++.++
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 4799999999864 4578999999999999999999999998865 2578999999999999999999987
Q ss_pred cCCCCceEEEEeCCCCCch------------------hH-----------------------------------------
Q 010876 190 GASSKIKSTCIYGGVPKGP------------------QV----------------------------------------- 210 (498)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~------------------~~----------------------------------------- 210 (498)
.....++++.+.|+...=- ..
T Consensus 75 ~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l 154 (620)
T 4a15_A 75 SSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEF 154 (620)
T ss_dssp HHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHH
T ss_pred hhccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHH
Confidence 6655666666554321000 00
Q ss_pred ---------------HHHhcCCcEEEcChHHHHHHHhccC----c-ccccccEEEeccchhhhcC---------------
Q 010876 211 ---------------RDLQKGVEIVIATPGRLIDMLESHN----T-NLRRVTYLVLDEADRMLDM--------------- 255 (498)
Q Consensus 211 ---------------~~~~~~~~Ivi~T~~~l~~~l~~~~----~-~l~~~~~vI~DE~h~~~~~--------------- 255 (498)
+.....++|||+++..|.+...+.. . ....-.+|||||||.+.+.
T Consensus 155 ~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~ 234 (620)
T 4a15_A 155 YDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLN 234 (620)
T ss_dssp HHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHH
T ss_pred HHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHH
Confidence 0111135899999987666432211 0 1234569999999975410
Q ss_pred -----------Cc-------HHH-------HH-----------------------------------HH-------HH--
Q 010876 256 -----------GF-------EPQ-------IK-----------------------------------KI-------LS-- 266 (498)
Q Consensus 256 -----------~~-------~~~-------~~-----------------------------------~i-------~~-- 266 (498)
.+ ... +. .+ ..
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 314 (620)
T 4a15_A 235 RADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYV 314 (620)
T ss_dssp HHHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH
Confidence 00 000 00 00 00
Q ss_pred ------h--------------------cC------------------------------CCCcEEEEcCCCcHHHHHHHH
Q 010876 267 ------Q--------------------IR------------------------------PDRQTLYWSATWPKEVEHLAR 290 (498)
Q Consensus 267 ------~--------------------~~------------------------------~~~~~i~~SAT~~~~~~~~~~ 290 (498)
. .. ....+|++|||+.+ ...+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~ 393 (620)
T 4a15_A 315 ENEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSD 393 (620)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHH
T ss_pred HhhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHH
Confidence 0 00 01245899999976 444444
Q ss_pred HHhcCCeEEEEcCCCcccccceeeeE-eecc------hhhhHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhhC
Q 010876 291 QYLYNPYKVIIGSPDLKANHAIRQHV-DIVS------ESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMD 361 (498)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~k~~~l~~~l~~~~--~~~~vlIf~~s~~~~~~l~~~L~~~ 361 (498)
.+..+...+.+.++.. ..+....+ ...+ .......+.+.+..+. ..+.+|||++|....+.+++.|+.
T Consensus 394 ~lGl~~~~~~~~spf~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~- 470 (620)
T 4a15_A 394 ITGFEIPFKKIGEIFP--PENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF- 470 (620)
T ss_dssp HHCCCCCEEECCCCSC--GGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS-
T ss_pred HhCCCceeeecCCCCC--HHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh-
Confidence 4433333333333221 11111111 0011 1111233333333321 245799999999999999988872
Q ss_pred CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec--cccccCCCCC--CCEEEEcCCCCC-------------------
Q 010876 362 GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD--VAARGLDVKD--VKYVINYDFPGS------------------- 418 (498)
Q Consensus 362 ~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~Gldi~~--v~~VI~~~~p~s------------------- 418 (498)
+... ...+++..++..+++.|+ ++-.||+++. .+.+|||+|+ +.+||...+|..
T Consensus 471 -~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~ 547 (620)
T 4a15_A 471 -EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGK 547 (620)
T ss_dssp -CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSC
T ss_pred -cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCC
Confidence 2222 444555678999999999 8889999984 8999999987 778998887752
Q ss_pred ----------hhHHHHhhcccccCCCcceEEEEecc
Q 010876 419 ----------LEDYVHRIGRTGRAGAKGTAYTFFTA 444 (498)
Q Consensus 419 ----------~~~~~Qr~GR~~R~g~~g~~~~~~~~ 444 (498)
.....|.+||+-|...+--++++++.
T Consensus 548 ~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 548 GWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 11235999999998766555666654
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.82 E-value=9.9e-20 Score=168.07 Aligned_cols=139 Identities=19% Similarity=0.136 Sum_probs=109.9
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
..|+++|.++++.++.++++++++|||+|||.+++.++... +.++||++|+++|+.||.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 48999999999999999899999999999999987765532 345999999999999999999985
Q ss_pred Cce-EEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCC
Q 010876 194 KIK-STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 272 (498)
Q Consensus 194 ~~~-~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~ 272 (498)
++. +..+.++... ..+|+|+|++.+....... ..++++||+||+|++.+..+. .++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~-~~~ 219 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMS-IAP 219 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTC-CCS
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhc-cCC
Confidence 466 6666665532 4689999999987655421 245899999999999876643 344444 467
Q ss_pred cEEEEcCCCcHH
Q 010876 273 QTLYWSATWPKE 284 (498)
Q Consensus 273 ~~i~~SAT~~~~ 284 (498)
++++||||++..
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 899999998753
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.82 E-value=5.7e-20 Score=172.57 Aligned_cols=127 Identities=19% Similarity=0.268 Sum_probs=100.1
Q ss_pred cchhhhHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhC-CCCeEEecCCCCHHHHHHHHHHHhcC-CCc-EEEE
Q 010876 319 VSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAG-KSP-IMTA 394 (498)
Q Consensus 319 ~~~~~k~~~l~~~l~~~~-~~~~vlIf~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~r~~~~~~f~~g-~~~-vLva 394 (498)
...+.|...+.+++.... .+.++||||++...++.+...|... ++++..+||++++.+|+.+++.|+++ .++ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 456789999999988763 5679999999999999999999875 99999999999999999999999998 777 7889
Q ss_pred eccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCcceEE--EEeccc
Q 010876 395 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY--TFFTAA 445 (498)
Q Consensus 395 T~~~~~Gldi~~v~~VI~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~ 445 (498)
|+++++|+|++.+++||+||+||++..|.||+||++|.|+.+.++ .|++.+
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999999999999999999999999999999999999999987664 445544
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.90 E-value=2.8e-09 Score=111.38 Aligned_cols=146 Identities=23% Similarity=0.320 Sum_probs=89.7
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCchHH--HHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q 010876 117 TPIQAQGWPMALKGRDLIGIAETGSGKT--LAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 194 (498)
Q Consensus 117 ~~~Q~~~i~~~l~~~~~i~~a~TGsGKT--~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~ 194 (498)
.+.|.+|++.++.++.+++.+++|+||| +.++++++..+.. ..+.++++++||..+|.++.+.+.......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 4555665554321 1356799999999999999888776543322
Q ss_pred ceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcE
Q 010876 195 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 274 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~ 274 (498)
+..... ..... ....+ ..++-.+|+.. . +.........+++||+||++.+ + ...+..++..++...|+
T Consensus 225 l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 225 LTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARV 292 (608)
T ss_dssp CCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEE
T ss_pred CCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEE
Confidence 211000 00000 00000 01222222221 1 1111122337899999999944 3 56778888888888898
Q ss_pred EEEcCC
Q 010876 275 LYWSAT 280 (498)
Q Consensus 275 i~~SAT 280 (498)
+++.-.
T Consensus 293 iLvGD~ 298 (608)
T 1w36_D 293 IFLGDR 298 (608)
T ss_dssp EEEECT
T ss_pred EEEcch
Confidence 887644
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.70 E-value=1.6e-05 Score=83.41 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=56.1
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 113 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 113 ~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
...+++.|.+|+..++...-+++.||+|+|||.+..- ++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999999877799999999999986433 44454432 2567999999999999999888765
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.66 E-value=8.8e-07 Score=93.55 Aligned_cols=68 Identities=22% Similarity=0.184 Sum_probs=54.6
Q ss_pred CCcHHHHHHHHHhhcCCc-EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~-~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.+++-|.+|+..++..++ .++.||+|+|||.+..- ++.++... +.++|+++||..-+.++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 689999999999987765 78999999999987443 44444442 5679999999999999988887653
No 97
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.58 E-value=9.9e-06 Score=86.87 Aligned_cols=71 Identities=21% Similarity=0.197 Sum_probs=56.4
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 113 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 113 ~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
...+++.|.+|+..++.+.-+++.||+|+|||.+.. .++.++... .+.++|+++||..-+.++.+.+.+.+
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 457899999999999887778999999999998643 344555432 25679999999999999988887643
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.3e-05 Score=86.02 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=56.1
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 113 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 113 ~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
+..+++.|.+|+..++.+.-+++.||+|+|||.+..- ++.++... .+.++|+++||...+.++.+.+.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 3578999999999998877789999999999976433 33444321 14569999999999999999988753
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.53 E-value=3.9e-06 Score=84.78 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=79.5
Q ss_pred HCCCCCCcHHHHHHHHHhhcC----C-cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q 010876 110 KAGFFEPTPIQAQGWPMALKG----R-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 184 (498)
Q Consensus 110 ~~~~~~~~~~Q~~~i~~~l~~----~-~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~ 184 (498)
...|..|++-|.+++..++.. + .+++.|+.|+|||.+. ..++..+.... ...+++++||...|..+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHHHh
Confidence 356788999999999976532 3 7999999999999763 34555555431 2369999999888776665
Q ss_pred HHHHhcCCCCceEEEEeCCCCCchhHHHHh------cCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcH
Q 010876 185 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQ------KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFE 258 (498)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~ 258 (498)
.+. ..+..++ ..+. .....+.. .....+..+++||+||++.+. .
T Consensus 93 ~~~-------~~~~T~h---------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~ 142 (459)
T 3upu_A 93 LSG-------KEASTIH---------SILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----R 142 (459)
T ss_dssp HHS-------SCEEEHH---------HHHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----H
T ss_pred hhc-------cchhhHH---------HHhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----H
Confidence 541 1111110 0000 00000000 122345678999999999754 4
Q ss_pred HHHHHHHHhcCCCCcEEEEc
Q 010876 259 PQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 259 ~~~~~i~~~~~~~~~~i~~S 278 (498)
..+..++..+....+++++.
T Consensus 143 ~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 143 KLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHhccCCCEEEEEC
Confidence 45566666665555555543
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.42 E-value=1.4e-06 Score=90.05 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=81.6
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
..+++.|.+++..++.++.+++.+++|+|||... ..++..+.. .+.++++++||...+..+.+.+..
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~~~----- 254 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES-------LGLEVGLCAPTGKAARRLGEVTGR----- 254 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHHTS-----
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhhcc-----
Confidence 3689999999999999889999999999999763 334444443 256799999999888777664421
Q ss_pred CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCc
Q 010876 194 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 273 (498)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~ 273 (498)
.... +..+.. ..- + .+.........+++||+||++.+. ...+..++..++...+
T Consensus 255 --~a~T----------ih~ll~---~~~-~------~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~ 308 (574)
T 3e1s_A 255 --TAST----------VHRLLG---YGP-Q------GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGAR 308 (574)
T ss_dssp --CEEE----------HHHHTT---EET-T------EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCE
T ss_pred --cHHH----------HHHHHc---CCc-c------hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCE
Confidence 1100 001000 000 0 001112234467999999999764 4566777777777777
Q ss_pred EEEEc
Q 010876 274 TLYWS 278 (498)
Q Consensus 274 ~i~~S 278 (498)
++++-
T Consensus 309 lilvG 313 (574)
T 3e1s_A 309 VLLVG 313 (574)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77654
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.29 E-value=7.2e-05 Score=79.07 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
..+++-|.+++.. ....+++.|+.|||||.+.+--+ .++.... .....++|++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri-~~l~~~~---~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRI-AWLMSVE---NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHH-HHHHHTS---CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHH-HHHHHhC---CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4799999999973 35679999999999998754433 3333321 1123469999999999999999988764
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.15 E-value=1.5e-05 Score=74.76 Aligned_cols=123 Identities=9% Similarity=0.026 Sum_probs=89.9
Q ss_pred cchhhhHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 010876 319 VSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 397 (498)
Q Consensus 319 ~~~~~k~~~l~~~l~~~~~-~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 397 (498)
+..+.|+..|..+|..+.. +.++|||++..+..+.+..+|...++.+..+.|.....+ .+ -.+....+.+.|..
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsa 179 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSE 179 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECC
Confidence 4567899888888887654 459999999999999999999999999999999855432 11 12455566666766
Q ss_pred ccccCC-----CCCCCEEEEcCCCCChhHH-HHhhcccccCC--C--cceEEEEecccc
Q 010876 398 AARGLD-----VKDVKYVINYDFPGSLEDY-VHRIGRTGRAG--A--KGTAYTFFTAAN 446 (498)
Q Consensus 398 ~~~Gld-----i~~v~~VI~~~~p~s~~~~-~Qr~GR~~R~g--~--~g~~~~~~~~~~ 446 (498)
..-|+| +..++.||.||..|++..- +|.+-|+.|.+ + .-.+|.+++.+.
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 666675 6789999999999999885 99998998873 2 346666777554
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.51 E-value=0.0009 Score=65.07 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.|+|+|...+..+...+-+++..+-+.|||.++...++..+... .+..+++++|++..|..+.+.+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 78999999998765556689999999999987666555444432 25679999999999988877776553
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.42 E-value=0.00048 Score=67.84 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=62.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHH
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 212 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (498)
.++.|+.|+|||... ..+... ...+|++||++++..+.+.+.+.+..
T Consensus 164 ~~I~G~aGsGKTt~I-----~~~~~~--------~~~lVlTpT~~aa~~l~~kl~~~~~~-------------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEI-----LSRVNF--------EEDLILVPGRQAAEMIRRRANASGII-------------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHH-----HHHCCT--------TTCEEEESCHHHHHHHHHHHTTTSCC--------------------
T ss_pred EEEEcCCCCCHHHHH-----HHHhcc--------CCeEEEeCCHHHHHHHHHHhhhcCcc--------------------
Confidence 788999999999852 222221 23699999999999988887543210
Q ss_pred HhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCC
Q 010876 213 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 280 (498)
Q Consensus 213 ~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 280 (498)
.....-|.|.++++- .........+++|||||+-.+- ...+..++...+. .+++++--+
T Consensus 211 --~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~~----~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 --VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLMLH----TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp --CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGSC----HHHHHHHHHHTTC-SEEEEEECT
T ss_pred --ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccCC----HHHHHHHHHhCCC-CEEEEecCc
Confidence 011233677666432 1112222247899999998543 2334444444433 555554433
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.19 E-value=0.006 Score=63.38 Aligned_cols=72 Identities=13% Similarity=0.009 Sum_probs=56.0
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
.|+|+|...+..+...+..++..+-++|||......++..+... .+..+++++|+...|..+.+.+..+...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 68999999998775566789999999999987655455444442 2557999999999999988888776544
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.16 E-value=0.0017 Score=56.10 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=23.0
Q ss_pred cHHHHHHHHHhh---------cCCcEEEEcCCCchHHHHHH
Q 010876 117 TPIQAQGWPMAL---------KGRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 117 ~~~Q~~~i~~~l---------~~~~~i~~a~TGsGKT~~~~ 148 (498)
.+.|.+++..+. .++.+++.+|+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 445666665543 36779999999999997643
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.06 E-value=0.0017 Score=56.47 Aligned_cols=39 Identities=23% Similarity=0.105 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 176 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~ 176 (498)
++-.++.+++|+|||+.++-.+ ..... .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~-~~~~~-------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFV-EIYKL-------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH-HHHHH-------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HHHHH-------CCCeEEEEeecc
Confidence 4557899999999998754433 33322 155788888873
No 108
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0076 Score=56.95 Aligned_cols=27 Identities=7% Similarity=-0.170 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhc
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNA 157 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~ 157 (498)
+.++++.+|+|+|||.++-. ++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~v~~-v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND-VMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH
Confidence 45699999999999987443 5555543
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.01 E-value=0.0018 Score=56.44 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 176 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~ 176 (498)
++=.++.+++|+|||+..+-.+ ..... .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a-~r~~~-------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRI-RRAKI-------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH-HHHHH-------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHH-HHHHH-------CCCEEEEEEecc
Confidence 3447888999999998755433 33332 266799998873
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.93 E-value=0.0013 Score=58.10 Aligned_cols=37 Identities=16% Similarity=-0.011 Sum_probs=26.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 176 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~ 176 (498)
=.++.+++|+|||+.++-.+...... +.+++++.|..
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~--------g~kVli~k~~~ 66 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFA--------KQHAIVFKPCI 66 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT--------TCCEEEEECC-
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC--------CCEEEEEEecc
Confidence 36688999999998755544444333 66799999875
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.91 E-value=0.00095 Score=59.76 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=50.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
|.-.++.+++|+|||+..+-. +..+.. .+.+++++.|...- . -...+....++. .
T Consensus 12 G~i~litG~mGsGKTT~ll~~-~~r~~~-------~g~kVli~~~~~d~--r---~~~~i~srlG~~---------~--- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRR-LHRLEY-------ADVKYLVFKPKIDT--R---SIRNIQSRTGTS---------L--- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHH-HHHHHH-------TTCCEEEEEECCCG--G---GCSSCCCCCCCS---------S---
T ss_pred cEEEEEECCCCCcHHHHHHHH-HHHHHh-------cCCEEEEEEeccCc--h---HHHHHHHhcCCC---------c---
Confidence 445788899999999875443 333333 25568888775310 0 000111111110 0
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhh
Q 010876 210 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 253 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~ 253 (498)
..+-+.+.+.++..+..... -.++++||+||++.+.
T Consensus 67 -------~~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 -------PSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFFD 102 (223)
T ss_dssp -------CCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGSC
T ss_pred -------cccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccCc
Confidence 12345666667666654321 2457899999999754
No 112
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.70 E-value=0.006 Score=65.01 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=70.6
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
..+++-|.+|+.. ....+++.|..|||||.+..--+...+.... -....+|+|+.|+..|.++.+.+.+.....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 4799999999876 3467999999999999874443333333211 123469999999999999999888763210
Q ss_pred CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhc-cCccc-ccccEEEeccchh
Q 010876 194 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNL-RRVTYLVLDEADR 251 (498)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~-~~~~l-~~~~~vI~DE~h~ 251 (498)
...+-|+|...+...+-+ ....+ -.-.+-|+|+.+.
T Consensus 84 ----------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 84 ----------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp ----------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred ----------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 024678888776544322 11111 0123567787653
No 113
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.55 E-value=0.005 Score=54.85 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 176 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~ 176 (498)
++=.++.+++|+|||..++-.+...... +.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~--------g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT--------TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC--------CCeEEEEeecC
Confidence 4557888999999998755544444332 66789988864
No 114
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.39 E-value=0.011 Score=56.52 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHhh----cCC---cEEEEcCCCchHHHHHHHHHHHHHhc
Q 010876 116 PTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVNA 157 (498)
Q Consensus 116 ~~~~Q~~~i~~~l----~~~---~~i~~a~TGsGKT~~~~l~~l~~~~~ 157 (498)
++|||.+++..+. +++ .+++.||.|+|||..+.. +...+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHhC
Confidence 4688888876654 343 389999999999976544 4444443
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.35 E-value=0.0016 Score=54.46 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHH
Q 010876 129 KGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~ 146 (498)
.++.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677899999999999975
No 116
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.33 E-value=0.016 Score=55.14 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
+..+++.||+|+|||..+.. +...+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHH
Confidence 35799999999999976433 344443
No 117
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.32 E-value=0.0065 Score=62.91 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCcHHHHHHHHHhhc--CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 115 EPTPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~--~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+ ++..+.. .++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~~----------~~~vtAP~~~a~~~l~~~~~~---- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIAG----------RAIVTAPAKASTDVLAQFAGE---- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSSS----------CEEEECSSCCSCHHHHHHHGG----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHHh----------CcEEECCCHHHHHHHHHHhhC----
Confidence 689999999998876 33478999999999965444 3344321 269999998765544333221
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHhcCCCC
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 272 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~ 272 (498)
.|-+..|+.+.. .+...++||||||=.+- .+.++.++...
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~---- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF---- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----
Confidence 133445655332 13458899999999875 66677776532
Q ss_pred cEEEEcCCC
Q 010876 273 QTLYWSATW 281 (498)
Q Consensus 273 ~~i~~SAT~ 281 (498)
..++||.|.
T Consensus 280 ~~v~~~tTv 288 (671)
T 2zpa_A 280 PRTLLTTTV 288 (671)
T ss_dssp SEEEEEEEB
T ss_pred CeEEEEecC
Confidence 246677774
No 118
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.26 E-value=0.035 Score=53.91 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=19.4
Q ss_pred cccEEEeccchhhhcCC-cHHHHHHHHHhc
Q 010876 240 RVTYLVLDEADRMLDMG-FEPQIKKILSQI 268 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~-~~~~~~~i~~~~ 268 (498)
...+|||||+|.+.... ....+..++...
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 35589999999987652 245555555544
No 119
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.23 E-value=0.0059 Score=53.74 Aligned_cols=39 Identities=18% Similarity=0.027 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 176 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~ 176 (498)
|.=.++.+++|+|||+..+-. +..... .+.+++++.|..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~-~~r~~~-------~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRR-LRRGIY-------AKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHH-------TTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHH-HHHHHH-------cCCceEEEEecc
Confidence 344788999999999864443 333333 256689998864
No 120
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.12 E-value=0.0074 Score=63.83 Aligned_cols=71 Identities=15% Similarity=0.064 Sum_probs=52.5
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcC
Q 010876 115 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 191 (498)
Q Consensus 115 ~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~ 191 (498)
.+++-|.+++... ...++|.|..|||||.+.+--+...+.... -....+|+|+.|+..|.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5789999999763 567999999999999874443333333211 1234699999999999999999987643
No 121
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.11 E-value=0.039 Score=47.86 Aligned_cols=140 Identities=17% Similarity=0.114 Sum_probs=74.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH-HHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~-La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
..+++..++|.|||.+++-.++..+.. +.+|+|+.-.+. ...-=.+.+.++. +.+...-.+-....+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~--------G~rV~~vQF~Kg~~~~gE~~~l~~L~----v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH--------GKNVGVVQFIKGTWPNGERNLLEPHG----VEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT--------TCCEEEEESSCCSSCCHHHHHHGGGT----CEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEeeCCCCCccHHHHHHhCC----cEEEEcccccccCCC
Confidence 368889999999999987767766655 677888843321 0000011223331 222111111111010
Q ss_pred HHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCc--HHHHHHHHHhcCCCCcEEEEcCCCcHHHHH
Q 010876 210 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEH 287 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 287 (498)
...- +. ......+..... ...-..+++||+||+-.....++ ...+..++...+....+|+.+--.|+++.+
T Consensus 97 ~~~~----~~--~~a~~~l~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 97 NREA----DT--AACMAVWQHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp GHHH----HH--HHHHHHHHHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred CcHH----HH--HHHHHHHHHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 0000 00 000111122211 11125689999999987655442 455667777777778888888888887776
Q ss_pred HH
Q 010876 288 LA 289 (498)
Q Consensus 288 ~~ 289 (498)
++
T Consensus 170 ~A 171 (196)
T 1g5t_A 170 LA 171 (196)
T ss_dssp HC
T ss_pred hC
Confidence 64
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.05 E-value=0.047 Score=50.38 Aligned_cols=19 Identities=21% Similarity=0.025 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
..+++.+|+|+|||..+..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3699999999999976443
No 123
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.01 E-value=0.0094 Score=51.68 Aligned_cols=38 Identities=18% Similarity=0.046 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 175 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~ 175 (498)
++=.++.+++|||||...+-.+-.+... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEccc
Confidence 4457889999999996634433333332 4668988876
No 124
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.94 E-value=0.018 Score=56.82 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=39.4
Q ss_pred ccccEEEeccchhhh---cCCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHh
Q 010876 239 RRVTYLVLDEADRML---DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 293 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~---~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 293 (498)
.++++||+|++-++. +..+...+..+.....++.-++.++|+...+....++.|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 478899999998754 3335667777777777777788888887655555555554
No 125
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.94 E-value=0.045 Score=46.84 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
...+++.+|+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4569999999999997643
No 126
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.91 E-value=0.023 Score=60.62 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=69.9
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccccC
Q 010876 328 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGL 402 (498)
Q Consensus 328 l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gl 402 (498)
+..++..+..+.+++|.++++.-|...++.++. .++++..+||+++..++..++..+.+|+.+|+|+| ..+...+
T Consensus 407 ll~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~ 486 (780)
T 1gm5_A 407 QLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV 486 (780)
T ss_dssp HHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC
T ss_pred HHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh
Confidence 333444444567999999999988877776654 37899999999999999999999999999999999 5566678
Q ss_pred CCCCCCEEEEcC
Q 010876 403 DVKDVKYVINYD 414 (498)
Q Consensus 403 di~~v~~VI~~~ 414 (498)
++.++.+||.-.
T Consensus 487 ~~~~l~lVVIDE 498 (780)
T 1gm5_A 487 HFKNLGLVIIDE 498 (780)
T ss_dssp CCSCCCEEEEES
T ss_pred hccCCceEEecc
Confidence 888898888433
No 127
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.88 E-value=0.033 Score=51.77 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=30.8
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH--hhcCCcEEEEcCCCchHHHHH
Q 010876 91 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM--ALKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 91 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~--~l~~~~~i~~a~TGsGKT~~~ 147 (498)
|..+|+++.-.+...+.+...-. .+ -...+.+.. +...+.+++.+|+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE-LP-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH-HH-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH-HH-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34568887666666666643210 00 001111111 134567999999999999754
No 128
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.86 E-value=0.038 Score=48.35 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=18.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
+.+++.+|+|+|||..+.. +...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 6799999999999976433 344443
No 129
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.83 E-value=0.15 Score=43.50 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=17.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHV 155 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~ 155 (498)
..+++.+++|+|||..+.. +...+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~-~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEG-LAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHH-HHHHH
T ss_pred CceEEECCCCCCHHHHHHH-HHHHH
Confidence 5699999999999976433 33443
No 130
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.71 E-value=0.055 Score=52.59 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=23.3
Q ss_pred EEEeccchhhhcCCcHHH-HHHHHHhcCCCCcEEEEcCCC
Q 010876 243 YLVLDEADRMLDMGFEPQ-IKKILSQIRPDRQTLYWSATW 281 (498)
Q Consensus 243 ~vI~DE~h~~~~~~~~~~-~~~i~~~~~~~~~~i~~SAT~ 281 (498)
+|||||+|.+........ +..++... ....+|+.|...
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 899999999876532333 44555444 445555555443
No 131
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.65 E-value=0.059 Score=53.63 Aligned_cols=44 Identities=16% Similarity=0.397 Sum_probs=25.6
Q ss_pred cccEEEeccchhhhcC-CcHHHHHHHHHhc-CCCCcEEEEcCCCcH
Q 010876 240 RVTYLVLDEADRMLDM-GFEPQIKKILSQI-RPDRQTLYWSATWPK 283 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~-~~~~~~i~~SAT~~~ 283 (498)
+.++|++||+|.+... .....+..++..+ ....++++.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 5679999999998753 1233344444332 344566665544443
No 132
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.63 E-value=0.063 Score=47.33 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=25.9
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCC
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 280 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 280 (498)
....+||+||+|.+.... ...+..++........+++.|..
T Consensus 101 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence 456799999999876432 44555566655555555555443
No 133
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.62 E-value=0.066 Score=44.09 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=24.8
Q ss_pred cEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCCc
Q 010876 242 TYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 282 (498)
Q Consensus 242 ~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 282 (498)
..+++||+|.+.... ...+..++...+.+.++|+.|...+
T Consensus 78 g~l~ldei~~l~~~~-q~~Ll~~l~~~~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 78 GTLVLSHPEHLTREQ-QYHLVQLQSQEHRPFRLIGIGDTSL 117 (145)
T ss_dssp SCEEEECGGGSCHHH-HHHHHHHHHSSSCSSCEEEEESSCH
T ss_pred cEEEEcChHHCCHHH-HHHHHHHHhhcCCCEEEEEECCcCH
Confidence 469999999876432 3444445555555666666665543
No 134
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.52 E-value=0.027 Score=50.62 Aligned_cols=20 Identities=15% Similarity=0.001 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~ 148 (498)
.++.+++.+|+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35679999999999997643
No 135
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.46 E-value=0.042 Score=51.84 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
++++++.+|+|+|||..+.. +...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~a-ia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA-MAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 57899999999999976443 333433
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.44 E-value=0.029 Score=54.62 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHH
Q 010876 132 DLIGIAETGSGKTLAY 147 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~ 147 (498)
.+++.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999764
No 137
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.39 E-value=0.03 Score=63.31 Aligned_cols=72 Identities=25% Similarity=0.222 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 114 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 114 ~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
.++++-|.++|..- +++++|.|..|||||.+.+--++..+.... ..-...++|++++|+..|.++.+.+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~--~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE--NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS--SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 37899999998764 779999999999999885554454444321 0112346999999999999998888763
No 138
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.38 E-value=0.042 Score=52.14 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=26.3
Q ss_pred ccccEEEeccchhhh-cCCcHHHHHHHHHhcCCCCcEEEEcCC
Q 010876 239 RRVTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYWSAT 280 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT 280 (498)
...++||+||+|.+. .. ....+..++...+...++|+.+..
T Consensus 104 ~~~~vliiDEi~~l~~~~-~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAE-SQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp SCEEEEEEESCCCGGGHH-HHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCCeEEEEECCcccCcHH-HHHHHHHHHHhCCCCcEEEEEeCC
Confidence 367899999999986 33 244555556555555666664443
No 139
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.12 E-value=0.034 Score=52.33 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
.++++.+|+|+|||..+..
T Consensus 68 ~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999976443
No 140
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.11 Score=51.19 Aligned_cols=56 Identities=25% Similarity=0.354 Sum_probs=35.3
Q ss_pred CCCcCCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHH
Q 010876 89 PKPVKSFRDVGFPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 89 ~~~~~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~ 147 (498)
..|..+|++++--+...+.+... .+..|.-++...+ ...+.+++.+|+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 45667899998777777766542 1122322222211 12467999999999999763
No 141
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.17 Score=49.15 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=31.8
Q ss_pred CcCCcccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHH
Q 010876 91 PVKSFRDVGFPDYVMQEISKAG---FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 91 ~~~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~ 147 (498)
|..+|++.+=-+...+.+.+.= +..|--++.-. +...+.+++.+|+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 4578999865555656554321 11222222111 123467999999999999863
No 142
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.89 E-value=0.058 Score=53.20 Aligned_cols=131 Identities=18% Similarity=0.130 Sum_probs=67.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc--CcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA--PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~--P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
-+++++++|+|||+.+.- +..++.. .+.+++++. |.+.-+ .+++..+....++.+.....+
T Consensus 102 vIlivG~~G~GKTTt~~k-LA~~l~~-------~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~------ 164 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAK-LARYFQK-------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQE------ 164 (443)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHHT-------TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTC------
T ss_pred EEEEECcCCCCHHHHHHH-HHHHHHH-------CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCC------
Confidence 478889999999987443 2333333 244565555 333332 333444443334443221111
Q ss_pred HHHHhcCCcEEEcChHHHH-HHHhccCcccccccEEEeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHH
Q 010876 210 VRDLQKGVEIVIATPGRLI-DMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEH 287 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~l~-~~l~~~~~~l~~~~~vI~DE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 287 (498)
..|..+. +.+... .-..++++|+|.+-++... .....+..+.....++.-++.++|+...+...
T Consensus 165 ------------~dp~~i~~~al~~a--~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~ 230 (443)
T 3dm5_A 165 ------------KDAIKLAKEGVDYF--KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN 230 (443)
T ss_dssp ------------CCHHHHHHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH
T ss_pred ------------CCHHHHHHHHHHHH--HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH
Confidence 1122111 111111 0124678999988654322 13344555566666777778888887655555
Q ss_pred HHHHHh
Q 010876 288 LARQYL 293 (498)
Q Consensus 288 ~~~~~~ 293 (498)
.++.|.
T Consensus 231 ~a~~f~ 236 (443)
T 3dm5_A 231 QALAFK 236 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.88 E-value=0.07 Score=51.72 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
+..+++.||+|+|||..+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4569999999999997643
No 144
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.86 E-value=0.081 Score=49.71 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=24.9
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
....+++|+||+|.|.... ...+.+.+...++...+|+.+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3467899999999986543 334555555544444444444
No 145
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.44 E-value=0.094 Score=49.19 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=30.5
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCchHHHHHH
Q 010876 91 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 91 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~i~~a~TGsGKT~~~~ 148 (498)
|..+|+++.-.+.+.+.+...-. .|..+....... +..++.+++.+|+|+|||+.+-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 34568887655666655543200 000000000111 2345679999999999998643
No 146
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.40 E-value=0.22 Score=47.09 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=30.4
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhh-----cCCcEEEEcCCCchHHHHHH
Q 010876 91 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 91 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l-----~~~~~i~~a~TGsGKT~~~~ 148 (498)
|..+|+++.-.+.+.+.+...-. .|. ..+.+. ..+.+++.+|+|+|||..+-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34568887666666666653210 010 011111 13469999999999997643
No 147
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.33 E-value=0.14 Score=46.11 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=31.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
.|.-+++.+++|+|||..++-.+...+.. +..++++.... -..++.+.+..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--------~~~v~~~~~e~-~~~~~~~~~~~~g 74 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM--------GEPGIYVALEE-HPVQVRQNMAQFG 74 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT--------TCCEEEEESSS-CHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEccC-CHHHHHHHHHHcC
Confidence 46678999999999997644323333221 33477776432 2345555555443
No 148
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.15 E-value=0.14 Score=50.29 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=66.3
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccc---ccCCC
Q 010876 332 LEDIMDGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA---RGLDV 404 (498)
Q Consensus 332 l~~~~~~~~vlIf~~s~~~~~~l~~~L~~---~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~---~Gldi 404 (498)
+.....+.++||.++++.-+.++++.++. .++.+..+||+.+..++....+.+..++.+|+|+|. .+. .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 33334567899999999999999999987 578999999999999998899999999999999994 221 12555
Q ss_pred CCCCEEEEcC
Q 010876 405 KDVKYVINYD 414 (498)
Q Consensus 405 ~~v~~VI~~~ 414 (498)
.++++||.-.
T Consensus 138 ~~~~~iViDE 147 (414)
T 3oiy_A 138 KRFDFVFVDD 147 (414)
T ss_dssp CCCSEEEESC
T ss_pred ccccEEEEeC
Confidence 6788877544
No 149
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.09 E-value=0.23 Score=47.86 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=23.0
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
....+|||||+|.+.... ...+.+.+...+....+|+.+
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 456799999999876432 334444555444444444444
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.08 E-value=0.51 Score=41.83 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYL 148 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~ 148 (498)
.+++.+|+|+|||..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997643
No 151
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.07 E-value=0.22 Score=44.31 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l 149 (498)
.|.-+++.+++|+|||..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 456689999999999965433
No 152
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.01 E-value=0.21 Score=47.90 Aligned_cols=42 Identities=7% Similarity=0.268 Sum_probs=28.2
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCCC
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 281 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 281 (498)
.+.+++|+||+|.+ +......+.+++...+....+|+.|..+
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 46789999999994 4334556667777766666666666554
No 153
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.35 Score=47.71 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=33.1
Q ss_pred CCcCCcccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHH
Q 010876 90 KPVKSFRDVGFPDYVMQEISKAG---FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 90 ~~~~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~ 147 (498)
.|..+|++.+=-+.+.+.|.+.= +..|--++.-. +..-+.+++.+|+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 45678999876666666665421 11111111111 123467999999999999764
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.85 E-value=0.15 Score=48.12 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=25.4
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcC
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 279 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 279 (498)
....+||+||+|.+.... ...+..++...+....+++.+.
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEeC
Confidence 456799999999986432 3445555665555555555443
No 155
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.65 E-value=0.35 Score=47.53 Aligned_cols=55 Identities=29% Similarity=0.357 Sum_probs=30.4
Q ss_pred CCcCCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHH
Q 010876 90 KPVKSFRDVGFPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 90 ~~~~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~ 147 (498)
.|..+|++.+=-+.+.+.+... .+..|--++.-. +...+.+++.||+|+|||+.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 3456788886555555555321 011111111111 122457999999999999763
No 156
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.53 E-value=0.33 Score=46.72 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
++.+++.+|+|+|||..+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35799999999999986443
No 157
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.52 E-value=0.14 Score=48.73 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~ 148 (498)
.++++.+|+|+|||..+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 479999999999997643
No 158
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.51 E-value=0.29 Score=46.69 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=25.2
Q ss_pred cccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcC
Q 010876 240 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 279 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 279 (498)
...+|++||+|.+.... ...+..++...+....+++.+.
T Consensus 133 ~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 133 PYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp SCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEeC
Confidence 55799999999886432 3455556666555555565543
No 159
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.35 E-value=0.3 Score=46.60 Aligned_cols=39 Identities=15% Similarity=0.391 Sum_probs=26.0
Q ss_pred ccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 239 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
...+++|+||+|.+.... ...+.+++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 357899999999886432 445666666665555555544
No 160
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.12 E-value=0.28 Score=54.88 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=66.6
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccccCCCCCC
Q 010876 333 EDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVKDV 407 (498)
Q Consensus 333 ~~~~~~~~vlIf~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gldi~~v 407 (498)
.....+.+++|.|+++.-|.+.++.+++ .++.+..+++..+..++..+++.+.+|..+|+|+| ..+...+.+.++
T Consensus 647 ~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l 726 (1151)
T 2eyq_A 647 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 726 (1151)
T ss_dssp HHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSE
T ss_pred HHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccccc
Confidence 3344567999999999988888877764 35788999999999999999999999999999999 666777888888
Q ss_pred CEEEE
Q 010876 408 KYVIN 412 (498)
Q Consensus 408 ~~VI~ 412 (498)
.+||.
T Consensus 727 ~lvIi 731 (1151)
T 2eyq_A 727 GLLIV 731 (1151)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 88773
No 161
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.09 E-value=0.39 Score=46.89 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
.+.+++.+|+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 367999999999999753
No 162
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.07 E-value=0.13 Score=51.20 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
.++++.+|+|+|||..+-.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 3699999999999986433
No 163
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.87 E-value=0.41 Score=43.46 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
.+.+++.+|+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4569999999999997643
No 164
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.75 E-value=0.25 Score=47.45 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
.+.+++.+|+|+|||+.+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999998643
No 165
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.69 E-value=0.3 Score=47.78 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=13.4
Q ss_pred cEEE--EcCCCchHHHHH
Q 010876 132 DLIG--IAETGSGKTLAY 147 (498)
Q Consensus 132 ~~i~--~a~TGsGKT~~~ 147 (498)
.+++ .++.|+|||..+
T Consensus 52 ~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEECTTCCSSSHHHHH
T ss_pred EEEEeCcCcCCCCHHHHH
Confidence 4777 899999999764
No 166
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.67 E-value=0.41 Score=46.60 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
.+.+++.+|+|+|||..+.
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 167
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.29 E-value=0.23 Score=46.65 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=25.0
Q ss_pred cccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEcCC
Q 010876 240 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 280 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 280 (498)
+..+||+||+|.+.... ...+.+++...+....+++.|..
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEeCC
Confidence 36799999999876432 33445555555555566665533
No 168
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.27 E-value=0.5 Score=47.09 Aligned_cols=39 Identities=21% Similarity=0.075 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
.|.-+++.|++|+|||..++-.+....... +..|+|+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-------g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-------NENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-------SCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEEC
Confidence 345689999999999976544333332221 334777764
No 169
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.04 E-value=0.91 Score=42.26 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
++.+++++++|+|||+.+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688899999999976444
No 170
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.95 E-value=0.39 Score=42.30 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=54.1
Q ss_pred CeEEEEeCCcccHHHHHHHHhhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----cccCCCCCC
Q 010876 339 SRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 407 (498)
Q Consensus 339 ~~vlIf~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~v 407 (498)
.++||.|+++.-+..+++.++.. ++.+..++|+.+..++.. .+.++..+|+|+|. .+ ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999888877653 688999999988765443 34456789999994 22 234667788
Q ss_pred CEEEEcC
Q 010876 408 KYVINYD 414 (498)
Q Consensus 408 ~~VI~~~ 414 (498)
++||.-.
T Consensus 160 ~~lViDE 166 (220)
T 1t6n_A 160 KHFILDE 166 (220)
T ss_dssp CEEEEES
T ss_pred CEEEEcC
Confidence 8877543
No 171
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=91.89 E-value=0.21 Score=42.43 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHhhcCC--cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCC
Q 010876 116 PTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 193 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~~~--~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~ 193 (498)
..+-|..++..++... -.++.+.-|++||...+..++....+ .|..|.+|+|+..-+....+....-+
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-------~Gr~V~vLAp~~~s~~~l~~~~~l~~--- 104 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-------QGREVQIIAADRRSQMNMKQDERLSG--- 104 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-------TTCCEEEECSTTHHHHHHSCTTTCSS---
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-------cCeEEEEEcCchHHHHHHHhhcCcCc---
Confidence 3457899999887554 37788999999998754444444343 37789999999765544332211100
Q ss_pred CceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHh-cCCCC
Q 010876 194 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ-IRPDR 272 (498)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~-~~~~~ 272 (498)
+++ +. ..+......|..=+++|||||..+.... +..++.. ...+.
T Consensus 105 ------------------------~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS~kE----~~~Lld~A~~~na 150 (189)
T 2l8b_A 105 ------------------------ELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLSLKE----TLTLLDGAARHNV 150 (189)
T ss_dssp ------------------------CSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHHHHH----HHHHHHHHHHTTC
T ss_pred ------------------------cee-eh-----hhhhcCCCCCCCCCEEEEechhhcCHHH----HHHHHHHHHhcCC
Confidence 000 11 1122222223445689999999987433 3333332 23567
Q ss_pred cEEEEcCC
Q 010876 273 QTLYWSAT 280 (498)
Q Consensus 273 ~~i~~SAT 280 (498)
|+|++--+
T Consensus 151 qvvll~~~ 158 (189)
T 2l8b_A 151 QVLITDSG 158 (189)
T ss_dssp CEEEEESS
T ss_pred EEEEeCCc
Confidence 88887655
No 172
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.88 E-value=0.39 Score=48.73 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=25.5
Q ss_pred cccEEEeccchhhhcCC--cHHHHHHHHHhcCCCCcEEEEcCCC
Q 010876 240 RVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATW 281 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~ 281 (498)
...+|||||+|.+.... ....+..++.. ....+++.+++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 45689999999986533 23445555544 345577777664
No 173
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.87 E-value=0.49 Score=45.41 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
.+.+++.+|+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999997643
No 174
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.85 E-value=0.76 Score=45.60 Aligned_cols=38 Identities=26% Similarity=0.037 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
|.-+++.|++|+|||..++-.+....... +..|+|+..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-------g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-------GVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-------CCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEEC
Confidence 44589999999999965444333333221 344777764
No 175
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.81 E-value=0.26 Score=46.49 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
...+++.+|+|+|||..+.
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3579999999999997643
No 176
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.56 E-value=0.91 Score=41.74 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=18.4
Q ss_pred hhcCCcEEEEcCCCchHHHHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~~~l 149 (498)
+..|.-+++.+++|+|||+.+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 45677799999999999976544
No 177
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.31 E-value=0.26 Score=57.41 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=27.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 176 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~ 176 (498)
++.+++.+|+|+|||..+...+..... .+.+++|+....
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~--------~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR--------EGKTCAFIDAEH 1465 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT--------TTCCEEEECTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--------cCCcEEEEEccc
Confidence 678999999999999765443333322 256688887653
No 178
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.18 E-value=0.48 Score=52.69 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=66.4
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cccc---cCCCC
Q 010876 333 EDIMDGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAAR---GLDVK 405 (498)
Q Consensus 333 ~~~~~~~~vlIf~~s~~~~~~l~~~L~~---~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~---Gldi~ 405 (498)
.....+.++||.++++.-|.++++.++. .++.+..+||+.+..+|...++.+.++..+|+|+|. .+.. -+++.
T Consensus 116 ~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~ 195 (1104)
T 4ddu_A 116 WLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQK 195 (1104)
T ss_dssp HHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTS
T ss_pred HHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhccc
Confidence 3334567899999999999999999988 567899999999998888899999999999999994 2211 14566
Q ss_pred CCCEEEEcCC
Q 010876 406 DVKYVINYDF 415 (498)
Q Consensus 406 ~v~~VI~~~~ 415 (498)
++.+||.-..
T Consensus 196 ~l~~lViDEa 205 (1104)
T 4ddu_A 196 RFDFVFVDDV 205 (1104)
T ss_dssp CCSEEEESCH
T ss_pred CcCEEEEeCC
Confidence 7888885443
No 179
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.13 E-value=0.62 Score=46.80 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
...+++.+|+|+|||+.+-
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 4569999999999998643
No 180
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.99 E-value=0.34 Score=43.63 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=25.8
Q ss_pred ccccEEEeccchhhhc-----CCcHHHHHHHHHhcCC-CCcEEEEcCC
Q 010876 239 RRVTYLVLDEADRMLD-----MGFEPQIKKILSQIRP-DRQTLYWSAT 280 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~-----~~~~~~~~~i~~~~~~-~~~~i~~SAT 280 (498)
.+.+++|+||.-.+++ ......+..++..+.. ...+++.|-.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678999999998875 3344446666655533 3444444433
No 181
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.98 E-value=7 Score=36.72 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=29.8
Q ss_pred hHHHHHHHhccCcccccccEEEeccchhhhc---CCcHHHHHHHHHhcCCCCcEEEEcC
Q 010876 224 PGRLIDMLESHNTNLRRVTYLVLDEADRMLD---MGFEPQIKKILSQIRPDRQTLYWSA 279 (498)
Q Consensus 224 ~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~---~~~~~~~~~i~~~~~~~~~~i~~SA 279 (498)
...+.+.+..... .--+|||||+|.+.. ..+...+..+.... +...+++.+.
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g~ 178 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSGS 178 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEES
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEcC
Confidence 4445555543211 234899999999874 35666676666554 2444444433
No 182
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.86 E-value=0.76 Score=45.95 Aligned_cols=65 Identities=8% Similarity=0.001 Sum_probs=44.5
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCCCEEEEcC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 414 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~ 414 (498)
+.+|+|.|.+...++.+.+.|...++++...... . .+. .-.|.|+..-+..|+.+|+.+++|..+
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~--~g~v~i~~g~L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EAS--DRGRYLMIGAAEHGFVDTVRNLALICE 446 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCC--TTCEEEEESCCCSCEEETTTTEEEEEH
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcC--CCcEEEEEcccccCcccCCCCEEEEEc
Confidence 4578888888888888888888877765543221 0 112 234667777788888888877777544
No 183
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.69 E-value=0.5 Score=42.26 Aligned_cols=21 Identities=24% Similarity=0.079 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l 149 (498)
.|.-+++.+|+|+|||..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 456789999999999976443
No 184
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.65 E-value=2 Score=39.80 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=27.5
Q ss_pred ccccEEEeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHH
Q 010876 239 RRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ 291 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 291 (498)
.++++||+||.-.+.. ......+..+...+.++.-++.+.++...+....++.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 232 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHH
Confidence 4678999999944322 1123344444444445544555666544333333333
No 185
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.60 E-value=1.4 Score=39.79 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=53.3
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc------cccCCCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA------ARGLDVKD 406 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~------~~Gldi~~ 406 (498)
..++||.++++.-+..+++.++.. ++.+..++|+.+...+...+ ....+|+|+|. .+ ...+++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 347999999999988888777653 78899999998866544333 25789999993 22 14567888
Q ss_pred CCEEEEcC
Q 010876 407 VKYVINYD 414 (498)
Q Consensus 407 v~~VI~~~ 414 (498)
+++||.-.
T Consensus 187 ~~~lViDE 194 (249)
T 3ber_A 187 LKYLVMDE 194 (249)
T ss_dssp CCEEEECS
T ss_pred cCEEEEcC
Confidence 88887543
No 186
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.55 E-value=0.41 Score=46.07 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 175 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~ 175 (498)
.+.-+++.+++|+|||..++- ++..+... +..++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~-la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALA-IVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHH-HHHHHHHC-------CCeEEEEECC
Confidence 345688999999999976444 33333321 3457777654
No 187
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.25 E-value=0.95 Score=45.94 Aligned_cols=60 Identities=10% Similarity=0.137 Sum_probs=55.5
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 396 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 396 (498)
..+++||.++++.-+....+.|+..++++..+|+..+..++..+...+..+..+|+++|.
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 356899999999999999999999999999999999999999999999999999999994
No 188
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.20 E-value=0.2 Score=48.05 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 175 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~ 175 (498)
.|+-+++.+++|+|||..++..+. .+... +..++|+...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~-~~~~~-------g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVA-NAQAA-------GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH-HHHHT-------TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHhC-------CCeEEEEECC
Confidence 355689999999999976544333 33221 3457777643
No 189
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.67 E-value=0.55 Score=43.92 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYL 148 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~ 148 (498)
++++.||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997643
No 190
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.64 E-value=0.85 Score=47.07 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=54.6
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHH--hcCCCcEEEEec
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF--KAGKSPIMTATD 396 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f--~~g~~~vLvaT~ 396 (498)
..+.+||.++++.-+....+.|+..++++..++++.+..++..++..+ ..+..+|+|+|.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 356899999999999999999999999999999999999999888888 578999999995
No 191
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=89.52 E-value=2.6 Score=36.16 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=52.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH---HHh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
++++||.|+++.-+..+.+.+.+. ++.+..++|+.+..+... .+. ....|+|+| +.+.. .+++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCcccC
Confidence 346999999999999999998876 367888998876544332 232 357899999 44443 4567788
Q ss_pred cEEEecc
Q 010876 242 TYLVLDE 248 (498)
Q Consensus 242 ~~vI~DE 248 (498)
++||.-+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887744
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.99 E-value=0.66 Score=43.86 Aligned_cols=65 Identities=17% Similarity=0.090 Sum_probs=34.5
Q ss_pred HHHHhhc-----CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH-HHHHHHHHHHh
Q 010876 123 GWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL-AVQIQQESTKF 189 (498)
Q Consensus 123 ~i~~~l~-----~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~L-a~q~~~~~~~~ 189 (498)
.++.++. |.-+++.+++|+|||..++-.+. ...... ...+.+..++|+.-...+ ..++.+.+.++
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~-~~~~~~-~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSV-NVQLPP-EKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH-HTTSCG-GGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHH-HHhccc-ccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4555553 45689999999999975443222 221110 001114568888654322 34444455554
No 193
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.90 E-value=0.29 Score=46.93 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
.++-+++.+++|+|||..++-.+. .+... +..++|+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~-~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIA-AAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHHC-------CCeEEEEeC
Confidence 456689999999999976554333 33221 345787775
No 194
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.83 E-value=0.41 Score=50.99 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=31.5
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCC-CCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHH
Q 010876 91 PVKSFRDVGFPDYVMQEISKAGFF-EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 91 ~~~~f~~~~l~~~~~~~l~~~~~~-~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~ 147 (498)
|..+|++++.-+.+.+.|...=.. ..+|.+..-+ -+...+.+++.+|+|+|||+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 456788877777777777643111 1111110000 0112356999999999999753
No 195
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.57 E-value=0.35 Score=46.30 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=25.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcH
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 176 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~ 176 (498)
|.-+++.+|+|+|||..++- ++..+.. .+..++|+..-.
T Consensus 61 G~i~~I~GppGsGKSTLal~-la~~~~~-------~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALH-AIAEAQK-------MGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHH-HHHHHHH-------TTCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHHh-------cCCeEEEEeccc
Confidence 45688999999999975433 3333332 134578876543
No 196
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.28 E-value=0.89 Score=45.04 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=25.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 175 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~ 175 (498)
.|.-+++.|++|+|||..++-.+...... +..|+|++.-
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--------g~~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--------DDVVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--------TCEEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--------CCEEEEEECC
Confidence 34458999999999997654433333332 4568888753
No 197
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.21 E-value=0.36 Score=39.45 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=16.8
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~ 146 (498)
+....++++.+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44567899999999999974
No 198
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=88.01 E-value=1.5 Score=43.81 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 010876 131 RDLIGIAETGSGKTLAY 147 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~ 147 (498)
+.+++.+|+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999864
No 199
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.78 E-value=1.6 Score=47.19 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=17.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHV 155 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~ 155 (498)
.++++++|+|+|||..+.. +...+
T Consensus 192 ~~vlL~G~pG~GKT~la~~-la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEG-LAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHH-HHHHH
T ss_pred CceEEEcCCCCCHHHHHHH-HHHHH
Confidence 4699999999999976443 33343
No 200
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.68 E-value=0.59 Score=44.37 Aligned_cols=38 Identities=26% Similarity=0.160 Sum_probs=25.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcC
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 174 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P 174 (498)
.|.-+++.|++|+|||..++-.+...... +..|+|++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~--------g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALND--------DRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeC
Confidence 45558999999999997544433333221 456888865
No 201
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.47 E-value=0.62 Score=47.54 Aligned_cols=20 Identities=35% Similarity=0.222 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~ 148 (498)
.+..+++.+|+|+|||+.+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36679999999999997543
No 202
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=87.25 E-value=1.2 Score=39.59 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=51.6
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----cccCCCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 406 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~ 406 (498)
..++||.++++.-+..+++.++.. ++.+..++|+.+..++...+ ...+|+|+|. .+ ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 458999999999999988888653 67889999998876654433 3688999994 22 23456667
Q ss_pred CCEEEE
Q 010876 407 VKYVIN 412 (498)
Q Consensus 407 v~~VI~ 412 (498)
+++||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 777774
No 203
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.19 E-value=2.2 Score=45.48 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
..++++.+|+|+|||..+.
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4579999999999997644
No 204
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=87.02 E-value=1.9 Score=35.79 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=52.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH---HHHh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+..+.. ..+. ....|+|+| +.+.. .+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAAR-GIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTT-TCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCchhcC
Confidence 346999999999999999988876 46788899887654433 2233 347899999 33333 4567788
Q ss_pred cEEEeccc
Q 010876 242 TYLVLDEA 249 (498)
Q Consensus 242 ~~vI~DE~ 249 (498)
++||.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88886543
No 205
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.45 E-value=3.9 Score=36.36 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=53.5
Q ss_pred CCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-----cc-cccCCCCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VA-ARGLDVKDV 407 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~v 407 (498)
+.++||.++++.-+..+++.++. .++.+..++|+.+.......+.. ..+|+|+|. .+ ...+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999998888777654 47889999999987765544432 578999994 22 234577888
Q ss_pred CEEEEcC
Q 010876 408 KYVINYD 414 (498)
Q Consensus 408 ~~VI~~~ 414 (498)
.+||.-.
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 8887543
No 206
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=86.24 E-value=3.3 Score=34.80 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=52.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH---HHHh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
..++||.|+++..+..+++.+.+. ++.+..++|+.+..... ..+. ....|+|+| +.+. ..+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~-~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----NVCA-RGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----CSCC-TTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----cchh-cCCCcccC
Confidence 467999999999999998888765 46788899887655443 2233 357899999 3332 34567788
Q ss_pred cEEEecc
Q 010876 242 TYLVLDE 248 (498)
Q Consensus 242 ~~vI~DE 248 (498)
++||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8888533
No 207
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.08 E-value=2.4 Score=40.78 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=54.0
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----cccCCCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 406 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~ 406 (498)
..++||.|+++.-++.+++.++.. ++.+..++|+.+...... .+..+..+|+|+|. .+ ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999888877653 688999999988765543 34456789999993 22 23456778
Q ss_pred CCEEEE
Q 010876 407 VKYVIN 412 (498)
Q Consensus 407 v~~VI~ 412 (498)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888774
No 208
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.06 E-value=0.97 Score=43.08 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=34.1
Q ss_pred HHHHhhc-----CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHH-HHHHHHHHHHh
Q 010876 123 GWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL-AVQIQQESTKF 189 (498)
Q Consensus 123 ~i~~~l~-----~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~L-a~q~~~~~~~~ 189 (498)
.++.++. |.-+++.+++|+|||..++-.+...... ....+.+..++|+.....+ ..++.+.+.++
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~--~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLP--GAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSC--BTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc--cccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 3555553 3458899999999997544322221111 0011124568888754321 23444444444
No 209
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=85.97 E-value=1 Score=42.18 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=49.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 211 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (498)
-+++.+|+|+|||..++-.+...... +.+.+++|+..-.++... .+++++-...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~------g~g~~vlyId~E~s~~~~---ra~~lGvd~d----------------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ------YPDAVCLFYDSEFGITPA---YLRSMGVDPE----------------- 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH------CTTCEEEEEESSCCCCHH---HHHHTTCCGG-----------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc------CCCceEEEEeccchhhHH---HHHHhCCCHH-----------------
Confidence 57889999999997654433333221 125578998775554322 3455543211
Q ss_pred HHhcCCcEEEcCh---HHH-HHHHhcc-CcccccccEEEeccchhhh
Q 010876 212 DLQKGVEIVIATP---GRL-IDMLESH-NTNLRRVTYLVLDEADRML 253 (498)
Q Consensus 212 ~~~~~~~Ivi~T~---~~l-~~~l~~~-~~~l~~~~~vI~DE~h~~~ 253 (498)
++++..| +.+ +..+... ...-..+++||+|-+..+.
T Consensus 84 ------~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 ------RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ------GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ------HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 2333333 333 2222111 1122467899999999875
No 210
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=85.67 E-value=4.2 Score=34.94 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=52.0
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----cccCCCCCCCE
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDVKY 409 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~v~~ 409 (498)
..++||.++++.-+..+++.++.. .+.+..++|+.+.......+. ...+|+|+|. .+ ...+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 457999999999999999988765 467888898877554433332 2578999994 22 23466778888
Q ss_pred EEEcC
Q 010876 410 VINYD 414 (498)
Q Consensus 410 VI~~~ 414 (498)
||.-.
T Consensus 148 iViDE 152 (207)
T 2gxq_A 148 AVLDE 152 (207)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 77533
No 211
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.60 E-value=1.4 Score=51.55 Aligned_cols=48 Identities=19% Similarity=0.059 Sum_probs=31.6
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 183 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~ 183 (498)
+-.++.+++.+++|+|||..+...+...+.. +.+++|+.-. ++.+++.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~--------Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECTT-SCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEEcc-ccHHHHH
Confidence 3357789999999999997755544444332 5668887643 4444444
No 212
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=85.44 E-value=3 Score=36.66 Aligned_cols=74 Identities=14% Similarity=0.265 Sum_probs=48.8
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----cccCCCCCC
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 407 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~---~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~v 407 (498)
.+.++||.++++.-+..+++.++. .++.+..++|+.+...+... +. ...+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 345799999999999999888876 36788888988765543332 22 3588999994 22 235667788
Q ss_pred CEEEEcC
Q 010876 408 KYVINYD 414 (498)
Q Consensus 408 ~~VI~~~ 414 (498)
++||.-.
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8877533
No 213
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=85.23 E-value=2.6 Score=36.30 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=50.2
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----c-ccCCCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----A-RGLDVKD 406 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~-~Gldi~~ 406 (498)
..++||.++++.-+..+++.++.. +..+..++|+.+..+.... + ....+|+|+|. .+ . ..+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 347999999999998888877542 5778889998876543322 2 35788999994 22 2 2346677
Q ss_pred CCEEEE
Q 010876 407 VKYVIN 412 (498)
Q Consensus 407 v~~VI~ 412 (498)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 214
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.15 E-value=3.1 Score=36.83 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=50.0
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----cc--cCCCC
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----AR--GLDVK 405 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~~--Gldi~ 405 (498)
.+.++||.++++.-+..+++.++.. ++.+..++|+.+.......+ ...+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3558999999999999888888754 47888999987655433322 4688999994 22 12 36667
Q ss_pred CCCEEEEcC
Q 010876 406 DVKYVINYD 414 (498)
Q Consensus 406 ~v~~VI~~~ 414 (498)
++++||.-.
T Consensus 171 ~~~~lViDE 179 (236)
T 2pl3_A 171 DLQMLVLDE 179 (236)
T ss_dssp TCCEEEETT
T ss_pred cccEEEEeC
Confidence 787777533
No 215
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.06 E-value=0.62 Score=42.49 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=16.5
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~ 146 (498)
+..|.-+++++|||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34566799999999999975
No 216
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.90 E-value=1.1 Score=47.84 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHH
Q 010876 131 RDLIGIAETGSGKTLA 146 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~ 146 (498)
+.+++.+|+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999975
No 217
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.77 E-value=0.82 Score=44.98 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=29.7
Q ss_pred CCcCCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHhhcCCcEEEEcCCCchHHHHH
Q 010876 90 KPVKSFRDVGFPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 90 ~~~~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~ 147 (498)
+|..+|++.+=-+...+.+... .+..|--++.-. +...+.+++.+|+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3456688876445555555321 011111111111 112467999999999999864
No 218
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.61 E-value=3.2 Score=39.12 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=36.1
Q ss_pred cccEEEeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEcCCCcHHHHHHHHHHh
Q 010876 240 RVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 293 (498)
Q Consensus 240 ~~~~vI~DE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 293 (498)
..+++++|.+.+... ......+..+...+.++..++.+.++...+....++.+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 456788998876432 334556666666667777888888887666666665553
No 219
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=84.23 E-value=1.2 Score=42.57 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCchHHHH
Q 010876 129 KGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~ 146 (498)
.+..+++++|||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 344689999999999975
No 220
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.08 E-value=3.9 Score=43.50 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCc--------EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCC
Q 010876 121 AQGWPMALKGRD--------LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 192 (498)
Q Consensus 121 ~~~i~~~l~~~~--------~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~ 192 (498)
.+++.....+.. +++.+|||+|||..+-..+-..... +..++.+- +..+...
T Consensus 504 ~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--------~~~~i~i~------------~s~~~~~ 563 (758)
T 3pxi_A 504 AKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--------EESMIRID------------MSEYMEK 563 (758)
T ss_dssp HHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--------TTCEEEEE------------GGGGCSS
T ss_pred HHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--------CcceEEEe------------chhcccc
Q ss_pred CCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchhhhcCCcHHHHHHHHHh-----
Q 010876 193 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ----- 267 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~----- 267 (498)
.... .+.+...+... ..++|+|||+|.+...- ...+..++..
T Consensus 564 ~~~~---------------------------~~~l~~~~~~~-----~~~vl~lDEi~~~~~~~-~~~Ll~~le~g~~~~ 610 (758)
T 3pxi_A 564 HSTS---------------------------GGQLTEKVRRK-----PYSVVLLDAIEKAHPDV-FNILLQVLEDGRLTD 610 (758)
T ss_dssp CCCC------------------------------CHHHHHHC-----SSSEEEEECGGGSCHHH-HHHHHHHHHHSBCC-
T ss_pred cccc---------------------------cchhhHHHHhC-----CCeEEEEeCccccCHHH-HHHHHHHhccCeEEc
Q ss_pred ------cCCCCcEEEEc
Q 010876 268 ------IRPDRQTLYWS 278 (498)
Q Consensus 268 ------~~~~~~~i~~S 278 (498)
...+..+|+.|
T Consensus 611 ~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 611 SKGRTVDFRNTILIMTS 627 (758)
T ss_dssp ----CCBCTTCEEEEEE
T ss_pred CCCCEeccCCeEEEEeC
No 221
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=83.97 E-value=2.7 Score=34.91 Aligned_cols=74 Identities=16% Similarity=0.343 Sum_probs=52.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH---HHHh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
..++||.|+++.-+..+++.+.+. ++.+..++++.+..+.. ..+. ....|+|+| +.+. ..+++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLA-RGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGT-TTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chhh-cCCCcccC
Confidence 456999999999999999988875 46788889887654433 2232 357899999 3333 34567788
Q ss_pred cEEEeccc
Q 010876 242 TYLVLDEA 249 (498)
Q Consensus 242 ~~vI~DE~ 249 (498)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88876543
No 222
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.92 E-value=3 Score=37.06 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=45.2
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccc-ccCCCCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAA-RGLDVKDV 407 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~v 407 (498)
..++||.++++.-+..+++.++.. +..+..++|+.+... ....+..+..+|+|+|. .+. ..+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 458999999999999888888653 567777888765432 33445567789999993 222 33567778
Q ss_pred CEEEEc
Q 010876 408 KYVINY 413 (498)
Q Consensus 408 ~~VI~~ 413 (498)
++||.-
T Consensus 175 ~~lViD 180 (237)
T 3bor_A 175 KMFVLD 180 (237)
T ss_dssp CEEEEE
T ss_pred cEEEEC
Confidence 887753
No 223
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.69 E-value=1.1 Score=42.09 Aligned_cols=68 Identities=19% Similarity=0.104 Sum_probs=35.1
Q ss_pred HHHHhhc-----CCcEEEEcCCCchHHHHHHHHHHHHHhcC----CCCCCCCC----CEEEEEcCcHHH-HHHHHHHHHH
Q 010876 123 GWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQ----PFLAPGDG----PIVLVLAPTREL-AVQIQQESTK 188 (498)
Q Consensus 123 ~i~~~l~-----~~~~i~~a~TGsGKT~~~~l~~l~~~~~~----~~~~~~~~----~~vlvl~P~~~L-a~q~~~~~~~ 188 (498)
.++.++. |.-+++.+++|+|||..++-.+....... .......+ .+++|+.-...+ ..++.+.+.+
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4555553 34589999999999975443332211110 00000112 568888754332 4455555555
Q ss_pred hc
Q 010876 189 FG 190 (498)
Q Consensus 189 ~~ 190 (498)
++
T Consensus 166 ~g 167 (322)
T 2i1q_A 166 AG 167 (322)
T ss_dssp HT
T ss_pred cC
Confidence 53
No 224
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=83.31 E-value=2.9 Score=36.48 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=52.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHH---Hh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+...+... +. ...+|+|+| +.+.. .+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAAR-GLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTC-SSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhhc-CCCCccC
Confidence 346999999999999999988876 4678889998876554332 33 347899999 44333 4567788
Q ss_pred cEEEecc
Q 010876 242 TYLVLDE 248 (498)
Q Consensus 242 ~~vI~DE 248 (498)
++||.=+
T Consensus 101 ~~Vi~~~ 107 (212)
T 3eaq_A 101 DLVVHYR 107 (212)
T ss_dssp SEEEESS
T ss_pred cEEEECC
Confidence 8887533
No 225
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=82.73 E-value=4.9 Score=40.29 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
.+++++++|+|||+.+.-
T Consensus 103 vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477889999999976443
No 226
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=82.43 E-value=7.7 Score=32.40 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=53.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH---HHHh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
..++||.|+++.-+..+++.+.+. ++.+..++++.+..+.. ..+. ....|+|+| +.+. ..+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~-~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-----NLFG-RGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-----SCCS-TTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC-----Cchh-cCcchhhC
Confidence 346999999999999999988876 46788889887654433 2233 357899999 2222 34567788
Q ss_pred cEEEeccch
Q 010876 242 TYLVLDEAD 250 (498)
Q Consensus 242 ~~vI~DE~h 250 (498)
++||.-+..
T Consensus 101 ~~Vi~~d~p 109 (172)
T 1t5i_A 101 NIAFNYDMP 109 (172)
T ss_dssp SEEEESSCC
T ss_pred CEEEEECCC
Confidence 888875543
No 227
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=82.36 E-value=3.4 Score=35.18 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh---HHHHh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+. ...+. ....|+|+| +.+.. .+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chhhc-CCCcccC
Confidence 456999999999999999888875 4678888887754433 33333 357899999 33222 3456778
Q ss_pred cEEEec
Q 010876 242 TYLVLD 247 (498)
Q Consensus 242 ~~vI~D 247 (498)
++||.=
T Consensus 116 ~~VI~~ 121 (185)
T 2jgn_A 116 KHVINF 121 (185)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 877763
No 228
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=82.20 E-value=1.4 Score=33.76 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=37.5
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010876 328 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 373 (498)
Q Consensus 328 l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 373 (498)
+.+.+..+..+.+++|+|.+-..+...+..|+..|+++..+.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4444555556678999999988899999999999999999998753
No 229
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=82.12 E-value=2.7 Score=47.23 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=49.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHH
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 212 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (498)
-+|.|..|||||.+.+--+...+... ..+..+|+|||.. +.-+..+.+.+.... .
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~-----~~~~~il~lVP~q-~TFt~~~rl~~~l~~---~---------------- 58 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA-----PFGKPIIFLVPDQ-MTFLMEYELAKTPDM---G---------------- 58 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC-----TTSSCEEEECCGG-GHHHHHHHHTCCSSC---S----------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC-----CCCCcEEEEecCc-ccHHHHHHHHHhhhh---c----------------
Confidence 36889999999987554444433332 1346799999975 322233333322110 0
Q ss_pred HhcCCcEEEcChHHHHHHHhccCcccccccEEEeccchh
Q 010876 213 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 251 (498)
Q Consensus 213 ~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI~DE~h~ 251 (498)
....+-|.|..+|...+.+..- ....-|+|+.+.
T Consensus 59 --~~~~~~V~TFhsla~~il~~~g---~~~~~ild~~~~ 92 (1166)
T 3u4q_B 59 --GMIRAQVFSFSRLAWRVLQHTG---GMSRPFLTSTGV 92 (1166)
T ss_dssp --EESSEEEECHHHHHHHHHHHHS---CTTSCEECHHHH
T ss_pred --ceeeeEEecHHHHHHHHHHHcC---CCcccCcCHHHH
Confidence 0136889998887654433211 123456777663
No 230
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.11 E-value=2.4 Score=41.51 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=18.3
Q ss_pred HHHHHHHhhc--CCcEEEEcCCCchHHHH
Q 010876 120 QAQGWPMALK--GRDLIGIAETGSGKTLA 146 (498)
Q Consensus 120 Q~~~i~~~l~--~~~~i~~a~TGsGKT~~ 146 (498)
+..++..++. +.-+++.+|||||||+.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3444444443 33488999999999975
No 231
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=82.00 E-value=8.5 Score=37.60 Aligned_cols=18 Identities=28% Similarity=0.143 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
.+.++++.|+|||+....
T Consensus 100 vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467779999999976444
No 232
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.18 E-value=1.5 Score=43.32 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=31.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 180 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~ 180 (498)
...++++.|+||||||... ..++..+... +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 3468999999999999863 3444444442 556888888877754
No 233
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=81.12 E-value=14 Score=32.74 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=50.0
Q ss_pred CeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----cccCCCCCCC
Q 010876 339 SRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDVK 408 (498)
Q Consensus 339 ~~vlIf~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~v~ 408 (498)
.++||.|+++.-+..+++.++. .++.+..++|+.+.......+ ....+|+|+|. .+ ...+++.+++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 4899999999999888877764 356788888887755433222 34688999994 22 2235677788
Q ss_pred EEEEc
Q 010876 409 YVINY 413 (498)
Q Consensus 409 ~VI~~ 413 (498)
+||.-
T Consensus 177 ~lViD 181 (253)
T 1wrb_A 177 YIVLD 181 (253)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87743
No 234
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=81.08 E-value=8.8 Score=34.58 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=52.2
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-----cc--cccCCCC
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VA--ARGLDVK 405 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~--~~Gldi~ 405 (498)
.+.++||.++++.-+..+++.++. .+..+..++|+......... +.. ..+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGN-GINIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHH-CCSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcC-CCCEEEEcHHHHHHHHHccCCcccc
Confidence 355799999999999888888765 35677888998876554333 333 388999993 11 1246778
Q ss_pred CCCEEEEcC
Q 010876 406 DVKYVINYD 414 (498)
Q Consensus 406 ~v~~VI~~~ 414 (498)
++.+||.-.
T Consensus 201 ~l~~lViDE 209 (262)
T 3ly5_A 201 NLQCLVIDE 209 (262)
T ss_dssp TCCEEEECS
T ss_pred cCCEEEEcC
Confidence 888887533
No 235
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=80.56 E-value=4.5 Score=39.84 Aligned_cols=71 Identities=21% Similarity=0.336 Sum_probs=53.6
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhC-CC---CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccc-----cCCCCC
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRMD-GW---PALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAAR-----GLDVKD 406 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~~-~~---~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~-----Gldi~~ 406 (498)
...++||.|+++.-+..+++.+++. +. .+..+||+....++..... ..+|+|+| +.+.. .+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 4679999999999999888888764 44 7899999998877655443 46899999 33322 456777
Q ss_pred CCEEEE
Q 010876 407 VKYVIN 412 (498)
Q Consensus 407 v~~VI~ 412 (498)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888774
No 236
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=80.34 E-value=2.7 Score=40.00 Aligned_cols=20 Identities=30% Similarity=0.054 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
|.-+.+.+|+|+|||..+..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34588999999999975433
No 237
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=80.01 E-value=1.7 Score=38.02 Aligned_cols=32 Identities=25% Similarity=0.135 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCchHHHHH
Q 010876 116 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~ 147 (498)
-+.-|..++..+..|.-+.+.+|.|||||+.+
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34457778888888888999999999999753
No 238
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=79.99 E-value=2.4 Score=33.61 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=36.7
Q ss_pred HHHHHHHhhcCC-CeEEEEe-CCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010876 327 KLVKLLEDIMDG-SRILIFM-DTKKGCDQITRQLRMDGWPALSIHGDKS 373 (498)
Q Consensus 327 ~l~~~l~~~~~~-~~vlIf~-~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 373 (498)
.+...+..+.+. .+++|+| .+-..+...+..|+..|+++..+.|++.
T Consensus 77 ~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 77 DIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 344445555566 7899999 5777888999999999999999999864
No 239
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=79.85 E-value=3.8 Score=45.38 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=57.5
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhh----CCC----CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cccccCC-CCC
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRM----DGW----PALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARGLD-VKD 406 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~----~~~----~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gld-i~~ 406 (498)
.+.++||.++++.-|.++++.++. .++ .+..+||+.+..++....+.+++ .+|+|+|. .+..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 456899999999999888887764 356 78999999999888777777776 99999994 3322222 567
Q ss_pred CCEEEEcC
Q 010876 407 VKYVINYD 414 (498)
Q Consensus 407 v~~VI~~~ 414 (498)
+++||.-.
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 78877533
No 240
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.15 E-value=7.3 Score=37.65 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=52.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH---HHh-cCCcEEEcChHHHHHHHhccCccccc
Q 010876 165 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRR 240 (498)
Q Consensus 165 ~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~ 240 (498)
.+.++||.|+++.-+..+++.+.+. ++.+..++++....+... .+. ....|+|+| +.+.. .+++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHT-TSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhc-CCCccc
Confidence 3667999999999999999988875 467888888877544432 222 357899999 44444 456778
Q ss_pred ccEEEe
Q 010876 241 VTYLVL 246 (498)
Q Consensus 241 ~~~vI~ 246 (498)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
No 241
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=79.12 E-value=3.5 Score=32.44 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=37.0
Q ss_pred HHHHHHHhhcCCCeEEEEeCCccc--HHHHHHHHhhCCCCeEEecCCCC
Q 010876 327 KLVKLLEDIMDGSRILIFMDTKKG--CDQITRQLRMDGWPALSIHGDKS 373 (498)
Q Consensus 327 ~l~~~l~~~~~~~~vlIf~~s~~~--~~~l~~~L~~~~~~~~~lh~~~~ 373 (498)
.+...+..+.++.+++|+|.+-.. +...+..|+..|+.+..+.|++.
T Consensus 60 ~l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 60 DLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 344455556567789999999877 88999999999999888888753
No 242
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=78.48 E-value=8.1 Score=38.50 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=28.9
Q ss_pred ccccEEEeccchhhhcC-CcHHHHHHH---HHhcC---CCCcEEEEcCCCcHHHHHHHHHHh
Q 010876 239 RRVTYLVLDEADRMLDM-GFEPQIKKI---LSQIR---PDRQTLYWSATWPKEVEHLARQYL 293 (498)
Q Consensus 239 ~~~~~vI~DE~h~~~~~-~~~~~~~~i---~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~ 293 (498)
..++++|+|=+-++... .....+.++ .+.+. +..-++.++||...+....++.|.
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~ 435 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 435 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHH
Confidence 34678999987654221 112233333 33221 233467888887655555555553
No 243
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=77.88 E-value=2.9 Score=30.98 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=33.0
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010876 333 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 373 (498)
Q Consensus 333 ~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 373 (498)
..+.+ .+++|+|.+-..+...+..|+..|+.+..+.|++.
T Consensus 49 ~~l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 49 HGLPR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CCCCS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred HhCCC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 33445 78999999988899999999999999778888764
No 244
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=77.82 E-value=11 Score=38.06 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=29.3
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 188 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~ 188 (498)
..|.-+++.+++|+|||..... ++..+.. .+.+++++++-.. ..|+...+..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~-l~g~~~~-------~G~~vi~~~~ee~-~~~l~~~~~~ 330 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSR-FVENACA-------NKERAILFAYEES-RAQLLRNAYS 330 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHH-HHHHHHT-------TTCCEEEEESSSC-HHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHH-HHHHHHh-------CCCCEEEEEEeCC-HHHHHHHHHH
Confidence 4566789999999999975333 2222221 1334677765432 2344444433
No 245
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=77.78 E-value=1.8 Score=49.98 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=53.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 209 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (498)
|+-+.+.+|.|||||+.++- ++....+ .+..++|+.+-.+|.... +++++-...
T Consensus 1431 g~~iei~g~~~sGkttl~~~-~~a~~~~-------~g~~~~~i~~e~~~~~~~---~~~~Gv~~~--------------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQ-VIAAAQR-------EGKTCAFIDAEHALDPIY---ARKLGVDID--------------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHH-HHHHHHH-------TTCCEEEECTTSCCCHHH---HHHTTCCGG---------------
T ss_pred CCEEEEEcCCCCCHHHHHHH-HHHHHHh-------cCCeEEEEecCCCCCHHH---HHHcCCCHH---------------
Confidence 35689999999999987544 3433333 266688888866665443 556553322
Q ss_pred HHHHhcCCcEEEcChHH---HHHHHhccCcccccccEEEeccchhhhc
Q 010876 210 VRDLQKGVEIVIATPGR---LIDMLESHNTNLRRVTYLVLDEADRMLD 254 (498)
Q Consensus 210 ~~~~~~~~~Ivi~T~~~---l~~~l~~~~~~l~~~~~vI~DE~h~~~~ 254 (498)
+++++-|+. .+..+... ..-..+++||+|.+-.+..
T Consensus 1485 --------~l~~~~p~~~e~~l~~~~~~-~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 --------NLLCSQPDTGEQALEICDAL-ARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp --------GCEEECCSSHHHHHHHHHHH-HHHTCCSEEEESCSTTCCC
T ss_pred --------HeEEeCCCcHHHHHHHHHHH-HHcCCCCEEEEccHHhCCc
Confidence 355666533 22222211 1123578999999886653
No 246
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.36 E-value=1.3 Score=39.50 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=30.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
|.-+++.|++|+|||..++-.+.+.+... +..++|++-. +-..++.+.+..+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHHHc
Confidence 45689999999999965443333333321 3347776643 2344455555443
No 247
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=77.07 E-value=2.1 Score=43.22 Aligned_cols=31 Identities=23% Similarity=0.014 Sum_probs=22.4
Q ss_pred CcHHHHHHHHH-hhcCCcEEEEcCCCchHHHH
Q 010876 116 PTPIQAQGWPM-ALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 116 ~~~~Q~~~i~~-~l~~~~~i~~a~TGsGKT~~ 146 (498)
+.+.+.+.+.. +..+..+++++|||||||+.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445555544 34677899999999999974
No 248
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=77.00 E-value=5.2 Score=37.14 Aligned_cols=74 Identities=18% Similarity=0.278 Sum_probs=53.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHH---h-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL---Q-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
+.++||.|+++.-+..+++.+.+. ++.+..++|+.+...+...+ . ...+|+|+| +.+.. .+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-Cccccce
Confidence 445999999999998888887664 57789999998766554332 2 357899999 44433 5567888
Q ss_pred cEEEeccc
Q 010876 242 TYLVLDEA 249 (498)
Q Consensus 242 ~~vI~DE~ 249 (498)
++||.=+.
T Consensus 98 ~~VI~~d~ 105 (300)
T 3i32_A 98 DLVVHYRM 105 (300)
T ss_dssp SEEEESSC
T ss_pred eEEEEcCC
Confidence 88886444
No 249
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=76.79 E-value=2.7 Score=36.85 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=44.9
Q ss_pred CCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----cccCCCCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 407 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~v 407 (498)
..++||.++++.-+..+++.++. .++.+..++|+.+..+.... +. ..+|+|+|. .+ ...+++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 45899999999999888887764 36788889998765443322 22 388999994 22 235567778
Q ss_pred CEEEEc
Q 010876 408 KYVINY 413 (498)
Q Consensus 408 ~~VI~~ 413 (498)
++||.-
T Consensus 157 ~~iViD 162 (224)
T 1qde_A 157 KMFILD 162 (224)
T ss_dssp CEEEEE
T ss_pred cEEEEc
Confidence 887743
No 250
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=76.69 E-value=19 Score=36.47 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=55.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHH---Hh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
+.++||.|+++.-+..+++.+.+... .++.+..++++......... +. ...+|+||| +.+.. .+++.++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~~-GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chhhc-CCCcccC
Confidence 56799999999999999999987643 24778888988765444322 22 357899999 44433 5677888
Q ss_pred cEEEeccc
Q 010876 242 TYLVLDEA 249 (498)
Q Consensus 242 ~~vI~DE~ 249 (498)
++||.-..
T Consensus 412 ~~VI~~~~ 419 (563)
T 3i5x_A 412 HEVLQIGV 419 (563)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 88886553
No 251
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=76.60 E-value=4.5 Score=38.62 Aligned_cols=21 Identities=38% Similarity=0.400 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l 149 (498)
...++++.+|+|+|||..+-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346799999999999986433
No 252
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=76.49 E-value=1.6 Score=37.70 Aligned_cols=21 Identities=19% Similarity=0.003 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l 149 (498)
.++.+++++++|||||+.+-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 466799999999999986443
No 253
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=76.46 E-value=1.6 Score=37.03 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q 010876 129 KGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~ 146 (498)
.|+-+++++|+|+|||+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466789999999999985
No 254
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.40 E-value=4.7 Score=36.23 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
.+.+++.+|+|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 346999999999999754
No 255
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=76.27 E-value=2.8 Score=40.65 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=27.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 177 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~ 177 (498)
.+.++++.++||+|||...-. ++..+.. .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~-------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM-------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT-------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH-------CCCEEEEEeCCcC
Confidence 566899999999999976433 3333332 2456777777654
No 256
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=75.91 E-value=1.3 Score=37.26 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
+.-+++++++|||||+++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 257
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=75.90 E-value=2.9 Score=39.16 Aligned_cols=51 Identities=14% Similarity=-0.007 Sum_probs=29.7
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 187 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~ 187 (498)
..|.-+++.|++|+|||..++-.+. ++..+ +..++|++.- .-..|+...+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~-~~a~~-------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAK-NMSDN-------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHH-HHHTT-------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH-HHHHc-------CCeEEEEECC-CCHHHHHHHHH
Confidence 3455699999999999965444333 33321 3568887743 22334444443
No 258
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=75.71 E-value=6.4 Score=36.41 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
-+++.+++|+|||+.+..
T Consensus 100 vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEECSSCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467789999999976444
No 259
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=75.56 E-value=2.3 Score=38.58 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~~ 147 (498)
.....+++.+++|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 34568999999999999753
No 260
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=75.48 E-value=23 Score=26.51 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=41.4
Q ss_pred EEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCC
Q 010876 341 ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 389 (498)
Q Consensus 341 vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~ 389 (498)
.+||.....-...+.+.++..|..+..++++.....|.+-++.|...-.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgv 53 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGV 53 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCC
Confidence 4678787788888888899999999999999999999999999985443
No 261
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=75.19 E-value=1.6 Score=38.27 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=47.9
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC--------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-c----cc-ccCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMD--------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-V----AA-RGLD 403 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~--------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~-~Gld 403 (498)
+.++||.++++.-+..+++.++.. ++.+..++|+.+..+... .+ ....+|+|+|. . +. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999988888877542 577888888875433211 11 24678999994 2 22 2356
Q ss_pred CCCCCEEEEc
Q 010876 404 VKDVKYVINY 413 (498)
Q Consensus 404 i~~v~~VI~~ 413 (498)
+..+++||.-
T Consensus 148 ~~~~~~lViD 157 (219)
T 1q0u_A 148 VHTAHILVVD 157 (219)
T ss_dssp GGGCCEEEEC
T ss_pred cCcceEEEEc
Confidence 6677777743
No 262
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=75.10 E-value=4.1 Score=40.15 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=45.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHh-cCCcEEEcChHHHHHHHhccCcccccccEE
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 244 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~v 244 (498)
+.++||+||+++-+..+++.+.+. ++.+..++|.. .......+. ...+|+||| +.+.. .+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT-----~v~e~-GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKT-FEREYPTIKQKKPDFILAT-----DIAEM-GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSS-CC--------CCCSEEEES-----SSTTC-CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchh-HHHHHhhhcCCCceEEEEC-----Chhhe-eeccC-ceEE
Confidence 456999999999999999999876 46788888843 333444444 347899999 44443 44566 7887
Q ss_pred E
Q 010876 245 V 245 (498)
Q Consensus 245 I 245 (498)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 7
No 263
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=74.70 E-value=12 Score=28.57 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=43.8
Q ss_pred HHHHHhhcCCCeEEEEeC------CcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 010876 329 VKLLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 392 (498)
Q Consensus 329 ~~~l~~~~~~~~vlIf~~------s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vL 392 (498)
.+.++......+++||.. ....|....+.|...+++...+.=......++.+.+......++.+
T Consensus 8 ~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i 77 (109)
T 3ipz_A 8 KDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQL 77 (109)
T ss_dssp HHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE
T ss_pred HHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 344555556779999998 4788999999999999887777655555555555444333334444
No 264
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=74.56 E-value=3.2 Score=36.63 Aligned_cols=21 Identities=38% Similarity=0.317 Sum_probs=16.5
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLLPAI 152 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l 152 (498)
++++.++.|+|||..++--+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 488999999999987555333
No 265
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=74.55 E-value=1.9 Score=36.51 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
.+.+++++++|||||+++-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45789999999999986544
No 266
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=74.40 E-value=2.2 Score=40.66 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=19.4
Q ss_pred HHHHhhcCCc--EEEEcCCCchHHHH
Q 010876 123 GWPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 123 ~i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
.+..++.|.+ +++-++||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 4566778887 67779999999986
No 267
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=74.34 E-value=1.8 Score=36.60 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~~~l 149 (498)
..++.+++.+++|||||+++-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHH
Confidence 3566799999999999986443
No 268
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=74.29 E-value=3.5 Score=31.44 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCC-eEEecCCCC
Q 010876 329 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 373 (498)
Q Consensus 329 ~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~ 373 (498)
...+..+.++.+++|+|.+-..+...+..|+..|+. +..+.|++.
T Consensus 49 ~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 49 GAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 344445556678999999988899999999999995 788888764
No 269
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=74.27 E-value=4.3 Score=35.25 Aligned_cols=67 Identities=15% Similarity=0.026 Sum_probs=37.0
Q ss_pred ccCCCHHHHHHHHHhcCceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC----CcEEEEcCC
Q 010876 64 VAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG----RDLIGIAET 139 (498)
Q Consensus 64 ~~~~~~~e~~~~~~~~~i~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~----~~~i~~a~T 139 (498)
...|+-.++...+-+.-. +. +=...+.+.|.-+++ .+-.. ...+..++.+ +.+++.+|+
T Consensus 5 ~~~m~~~~~i~~~~~~~~---~~------------~~w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPP 67 (212)
T 1tue_A 5 GSGSNMSQWIRFRCSKID---EG------------GDWRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPA 67 (212)
T ss_dssp -CCSCHHHHHHHHHHTSC---SC------------CCSHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCG
T ss_pred HHhcCHHHHHHHHHHHcc---CC------------CCHHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCC
Confidence 456677777665544321 11 112345666655543 33333 3444444443 248999999
Q ss_pred CchHHHHH
Q 010876 140 GSGKTLAY 147 (498)
Q Consensus 140 GsGKT~~~ 147 (498)
|+|||..+
T Consensus 68 GtGKTt~a 75 (212)
T 1tue_A 68 NTGKSYFG 75 (212)
T ss_dssp GGCHHHHH
T ss_pred CCCHHHHH
Confidence 99999754
No 270
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=74.25 E-value=2.4 Score=39.91 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=18.1
Q ss_pred HhhcCCcEEEEcCCCchHHHHH
Q 010876 126 MALKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 126 ~~l~~~~~i~~a~TGsGKT~~~ 147 (498)
.+..+.++++.+|+|+|||..+
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHH
Confidence 3456789999999999999753
No 271
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=74.10 E-value=1 Score=41.43 Aligned_cols=53 Identities=21% Similarity=0.368 Sum_probs=26.1
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHh--hcCCcEEEEcCCCchHHHH
Q 010876 91 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQ-AQGWPMA--LKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 91 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~i~~~--l~~~~~i~~a~TGsGKT~~ 146 (498)
|..+|++++-.+.+.+.+...= ..|+. .+++..+ .-.+.+++.+|+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 4467888876666666665321 11221 1222221 1234599999999999975
No 272
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=73.97 E-value=1.8 Score=40.92 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
+-+++++|||+|||..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999976433
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=73.47 E-value=1.5 Score=36.53 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYL 148 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~ 148 (498)
-++++|++|||||+.+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998643
No 274
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=73.47 E-value=1.9 Score=43.23 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=20.6
Q ss_pred HHHHHHhhcCCcEEEEcCCCchHHHH
Q 010876 121 AQGWPMALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 121 ~~~i~~~l~~~~~i~~a~TGsGKT~~ 146 (498)
..++..+..+.++++.+|+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 34444566788999999999999974
No 275
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=73.36 E-value=1.6 Score=37.86 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.2
Q ss_pred hhcCCcEEEEcCCCchHHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~~ 147 (498)
+..++-+++++++|||||+.+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 445677999999999999853
No 276
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=73.25 E-value=26 Score=35.67 Aligned_cols=78 Identities=10% Similarity=0.114 Sum_probs=56.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH---HHHh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
+.++||.|+++.-+..+++.+.+... .++.+..++++....... ..+. ....|+||| +.+.. .+++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~~~-GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chhhc-CCCcccC
Confidence 56799999999999999999987643 257788889887654443 2232 357899999 44443 5677888
Q ss_pred cEEEeccch
Q 010876 242 TYLVLDEAD 250 (498)
Q Consensus 242 ~~vI~DE~h 250 (498)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 888866543
No 277
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=73.21 E-value=7.4 Score=35.29 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=29.1
Q ss_pred HHHHHHHHHCCCCCCcHHHHHH-HHHhhcCC-----cEEEEcCCCchHHHHHH
Q 010876 102 DYVMQEISKAGFFEPTPIQAQG-WPMALKGR-----DLIGIAETGSGKTLAYL 148 (498)
Q Consensus 102 ~~~~~~l~~~~~~~~~~~Q~~~-i~~~l~~~-----~~i~~a~TGsGKT~~~~ 148 (498)
..+.+.|+.+|+. +++... +..++.++ .+++.+|+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3677777777653 555333 34445443 49999999999997644
No 278
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=72.94 E-value=7.8 Score=35.62 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
..++++.+|+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999997643
No 279
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=72.87 E-value=2.2 Score=36.83 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 010876 129 KGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~ 146 (498)
.++-+.+++|+|+|||+.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466799999999999985
No 280
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=72.79 E-value=2.4 Score=40.66 Aligned_cols=20 Identities=40% Similarity=0.408 Sum_probs=17.3
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~ 146 (498)
+..|..+++++|||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45788999999999999974
No 281
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=72.74 E-value=1.7 Score=39.22 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=29.7
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhh--cCCcEEEEcCCCchHHHHH
Q 010876 91 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 91 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l--~~~~~i~~a~TGsGKT~~~ 147 (498)
|..+|+++.-.+.....++..... . -...++..+- -.+.+++.+|+|+|||..+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 456788876666665555432110 0 0112222211 1235999999999999753
No 282
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=72.74 E-value=4.6 Score=40.86 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=47.7
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccc----cc-C-CCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA----RG-L-DVKD 406 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~----~G-l-di~~ 406 (498)
..++||.|+++.-+..+.+.++.. ++.+..+||+.+...+...+. ...+|+|+|. .+. .+ + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999888888777654 889999999986654432222 2478999993 332 22 3 6777
Q ss_pred CCEEEEc
Q 010876 407 VKYVINY 413 (498)
Q Consensus 407 v~~VI~~ 413 (498)
+++||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8887753
No 283
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=72.63 E-value=2.3 Score=37.06 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHHH
Q 010876 129 KGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~ 146 (498)
.|+-+++++|+|+|||+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 455688999999999985
No 284
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=72.59 E-value=6.5 Score=36.82 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=29.4
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhh-----cCCcEEEEcCCCchHHHHH
Q 010876 91 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 91 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l-----~~~~~i~~a~TGsGKT~~~ 147 (498)
|..+|+++.-.+.+.+.+...-. .|.+ .+.+. ..+.+++.+|+|+|||+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 34678888666666666543100 0000 01121 2356999999999999764
No 285
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=72.29 E-value=2.8 Score=39.42 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=18.8
Q ss_pred HHHHhhcCCc--EEEEcCCCchHHHH
Q 010876 123 GWPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 123 ~i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
.+..++.|.+ +++-++||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 3445678887 67779999999986
No 286
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=72.00 E-value=2.8 Score=39.86 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=20.9
Q ss_pred HHHHHhhcCCc--EEEEcCCCchHHHHH
Q 010876 122 QGWPMALKGRD--LIGIAETGSGKTLAY 147 (498)
Q Consensus 122 ~~i~~~l~~~~--~i~~a~TGsGKT~~~ 147 (498)
..+..++.|.+ +++.++||||||...
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 36677888987 677799999999873
No 287
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=71.99 E-value=1.7 Score=36.95 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=15.8
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~ 146 (498)
..|.-+++.+++|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3466689999999999984
No 288
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=71.89 E-value=1.9 Score=37.30 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHH
Q 010876 130 GRDLIGIAETGSGKTLA 146 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~ 146 (498)
++-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45689999999999965
No 289
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=71.80 E-value=12 Score=28.59 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=43.5
Q ss_pred HHHHHhhcCCCeEEEEeC------CcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 010876 329 VKLLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 393 (498)
Q Consensus 329 ~~~l~~~~~~~~vlIf~~------s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLv 393 (498)
.+.++......+++||.. +...|....+.|...+++...+.=..+.+.++.+.+.......+.++
T Consensus 6 ~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 6 NLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp HHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 344555556779999994 66789999999999998877776555666555554433333444443
No 290
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=71.73 E-value=8.4 Score=27.64 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=32.1
Q ss_pred HHHHhh--cCCCeEEEEeCCcccHHHHHHHHhhCCCC-eEEecCCCC
Q 010876 330 KLLEDI--MDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 373 (498)
Q Consensus 330 ~~l~~~--~~~~~vlIf~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~ 373 (498)
+.+.++ .++.+++|+|.+-..+...+..|+..|+. +..+ |++.
T Consensus 31 ~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 31 ERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 344444 45678999999988899999999999986 5555 6643
No 291
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=71.66 E-value=3.7 Score=35.65 Aligned_cols=21 Identities=29% Similarity=0.060 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l 149 (498)
.|.-+++.+++|+|||..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 355689999999999976443
No 292
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=71.66 E-value=2.8 Score=39.77 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=20.6
Q ss_pred HHHHHhhcCCc--EEEEcCCCchHHHHH
Q 010876 122 QGWPMALKGRD--LIGIAETGSGKTLAY 147 (498)
Q Consensus 122 ~~i~~~l~~~~--~i~~a~TGsGKT~~~ 147 (498)
..+..++.|.+ +++.++||||||...
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 35666788887 677799999999873
No 293
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=71.53 E-value=2.6 Score=39.94 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=18.2
Q ss_pred HHHhhcCCc--EEEEcCCCchHHHH
Q 010876 124 WPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 124 i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
+..++.|.+ +++.++||||||..
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeE
Confidence 444667877 67779999999986
No 294
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=71.45 E-value=2 Score=40.02 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYL 148 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~ 148 (498)
-+++.+|||+|||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 47889999999997643
No 295
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=71.37 E-value=2.4 Score=36.49 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~~ 147 (498)
..|.-+++.+++|||||+.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35667899999999999853
No 296
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=71.29 E-value=1.5 Score=49.89 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=27.6
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
+++-+++|+||+=.-+|..-...+.+.+....+++-+|..+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 34567888888887777666666666666665566555554
No 297
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=71.28 E-value=2.9 Score=40.58 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=18.0
Q ss_pred HHHhhcCCc--EEEEcCCCchHHHH
Q 010876 124 WPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 124 i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
+..++.|.+ +++.+.||||||..
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeE
Confidence 344567876 67779999999986
No 298
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=71.17 E-value=2.8 Score=34.92 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
+..+++.+++|||||+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999853
No 299
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=71.15 E-value=8.3 Score=35.63 Aligned_cols=68 Identities=12% Similarity=0.000 Sum_probs=47.3
Q ss_pred eEEEEeCCcccHHHHHHHHhhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----c-ccCCCCCC
Q 010876 340 RILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV-A-----A-RGLDVKDV 407 (498)
Q Consensus 340 ~vlIf~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~-~Gldi~~v 407 (498)
++||.++++.-|..++..++.. ++.+..++++...... .....+|+|+|.- + . ..+++.++
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 7999999999999887777643 4667777776543221 1356789999942 2 1 35778888
Q ss_pred CEEEEcC
Q 010876 408 KYVINYD 414 (498)
Q Consensus 408 ~~VI~~~ 414 (498)
.+||.-.
T Consensus 237 ~~lVlDE 243 (300)
T 3fmo_B 237 KVFVLDE 243 (300)
T ss_dssp SEEEETT
T ss_pred eEEEEeC
Confidence 9888544
No 300
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=71.08 E-value=2.3 Score=38.45 Aligned_cols=17 Identities=29% Similarity=0.053 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYL 148 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~ 148 (498)
-++++++||||||+.+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36889999999997643
No 301
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=70.91 E-value=2 Score=36.48 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
+.-+++.+++|||||+.+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999986443
No 302
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=70.89 E-value=2.8 Score=31.89 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=33.3
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCC
Q 010876 333 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 372 (498)
Q Consensus 333 ~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~ 372 (498)
.++.++.+++|+|.+-..+...+..|+..|+.+..+.|++
T Consensus 51 ~~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 51 NSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp GGCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hhhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 3444567899999998889999999999999888887764
No 303
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=70.71 E-value=2.3 Score=39.56 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYL 148 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~ 148 (498)
-+++++|||||||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37889999999997643
No 304
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=70.68 E-value=11 Score=35.79 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=51.1
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----cccCCCCC
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 406 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~ 406 (498)
...++||.|+++.-+.++++.++. .++.+..++|+.+..+....+. ..+|+|+|. .+ ...+++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345899999999999888877754 4678899999988766554443 467999993 22 22445667
Q ss_pred CCEEEE
Q 010876 407 VKYVIN 412 (498)
Q Consensus 407 v~~VI~ 412 (498)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 305
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.68 E-value=3.2 Score=40.30 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.2
Q ss_pred HHHHhhcCCc--EEEEcCCCchHHHHH
Q 010876 123 GWPMALKGRD--LIGIAETGSGKTLAY 147 (498)
Q Consensus 123 ~i~~~l~~~~--~i~~a~TGsGKT~~~ 147 (498)
.+..++.|.+ +++.++||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5666788887 677799999999873
No 306
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=70.58 E-value=3.2 Score=39.10 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=20.2
Q ss_pred HHHHHhhcCCc--EEEEcCCCchHHHH
Q 010876 122 QGWPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 122 ~~i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
..+..++.|.+ +++.++||||||..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 35666788887 67779999999986
No 307
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=70.57 E-value=3.1 Score=39.85 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=18.2
Q ss_pred HHHhhcCCc--EEEEcCCCchHHHH
Q 010876 124 WPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 124 i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
+..++.|.+ +++.++||||||..
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEe
Confidence 445677887 67779999999986
No 308
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=70.52 E-value=2.6 Score=36.28 Aligned_cols=19 Identities=37% Similarity=0.329 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~ 147 (498)
.|.-+.+.+|+|||||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5667889999999999853
No 309
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=70.52 E-value=3.2 Score=39.43 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=18.1
Q ss_pred HHHhhcCCc--EEEEcCCCchHHHH
Q 010876 124 WPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 124 i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
+..++.|.+ +++-++||||||..
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEE
Confidence 344667877 67779999999986
No 310
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=70.43 E-value=3.2 Score=39.61 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=19.1
Q ss_pred HHHHhhcCCc--EEEEcCCCchHHHH
Q 010876 123 GWPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 123 ~i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
.+..++.|.+ +++-++||||||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 4556678887 67779999999986
No 311
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=70.39 E-value=3.2 Score=39.46 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=18.9
Q ss_pred HHHHhhcCCc--EEEEcCCCchHHHH
Q 010876 123 GWPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 123 ~i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
.+..++.|.+ +++.++||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeE
Confidence 3455678887 67779999999986
No 312
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=70.39 E-value=2.8 Score=35.58 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~ 148 (498)
.+..+++++++|||||+++-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999998643
No 313
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=70.29 E-value=2.9 Score=31.60 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=32.7
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCC
Q 010876 335 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 372 (498)
Q Consensus 335 ~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~ 372 (498)
+.++.+++|+|.+-..+...+..|+..|+++..+.|++
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 34567899999998899999999999999888888875
No 314
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=70.18 E-value=2.8 Score=31.50 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=32.7
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCC
Q 010876 335 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 372 (498)
Q Consensus 335 ~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~ 372 (498)
+.++.+++|+|.+-..+...+..|+..|+++..+.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 34567899999998899999999999999888888875
No 315
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=70.01 E-value=3.3 Score=39.65 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=18.8
Q ss_pred HHHHhhcCCc--EEEEcCCCchHHHH
Q 010876 123 GWPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 123 ~i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
.+..++.|.+ +++.++||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 3445678887 67779999999976
No 316
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=70.01 E-value=19 Score=34.33 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=51.2
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-c----c-cccCCCCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-V----A-ARGLDVKDV 407 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~-~~Gldi~~v 407 (498)
+.++||.|+++.-+..+++.++.. ++.+..++|+......... ..+..+|+|+|. . + ....++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 458999999999988888777643 6788889998876543221 246788999993 1 2 233567778
Q ss_pred CEEEEcC
Q 010876 408 KYVINYD 414 (498)
Q Consensus 408 ~~VI~~~ 414 (498)
++||.-.
T Consensus 165 ~~vIiDE 171 (400)
T 1s2m_A 165 SLFIMDE 171 (400)
T ss_dssp CEEEEES
T ss_pred CEEEEeC
Confidence 8877533
No 317
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=69.97 E-value=3.3 Score=39.58 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=18.2
Q ss_pred HHHhhcCCc--EEEEcCCCchHHHH
Q 010876 124 WPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 124 i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
+..++.|.+ +++-++||||||..
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceE
Confidence 444667887 67779999999986
No 318
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=69.94 E-value=2.1 Score=35.64 Aligned_cols=18 Identities=11% Similarity=-0.245 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
-+++.+++|||||+++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999986443
No 319
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=69.93 E-value=3.3 Score=39.44 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=18.2
Q ss_pred HHHhhcCCc--EEEEcCCCchHHHH
Q 010876 124 WPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 124 i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
+..++.|.+ +++.++||||||..
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 345677887 67779999999986
No 320
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=69.80 E-value=3.4 Score=39.23 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=18.3
Q ss_pred HHHhhcCCc--EEEEcCCCchHHHH
Q 010876 124 WPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 124 i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
+..++.|.+ ++.-++||||||..
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEe
Confidence 445667887 67779999999986
No 321
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=69.76 E-value=11 Score=36.23 Aligned_cols=73 Identities=11% Similarity=0.167 Sum_probs=53.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH---HHh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
..++||.|+++.-+..+++.+.+. ++.+..++++....+... .+. ....|+|+| +.+. ..+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCA-RGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGT-SSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Cccc-cCCCccCC
Confidence 457999999999999999999876 366788888876544432 233 357899999 3433 35678888
Q ss_pred cEEEecc
Q 010876 242 TYLVLDE 248 (498)
Q Consensus 242 ~~vI~DE 248 (498)
++||.-.
T Consensus 336 ~~Vi~~~ 342 (412)
T 3fht_A 336 SVVINFD 342 (412)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9888543
No 322
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=69.72 E-value=3.3 Score=39.43 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=18.2
Q ss_pred HHHhhcCCc--EEEEcCCCchHHHH
Q 010876 124 WPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 124 i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
+..++.|.+ +++-++||||||..
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceee
Confidence 445667887 67779999999986
No 323
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=69.69 E-value=22 Score=26.57 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=41.2
Q ss_pred HHhhcCCCeEEEEeC------CcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 010876 332 LEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 392 (498)
Q Consensus 332 l~~~~~~~~vlIf~~------s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vL 392 (498)
+.+.....+++||.. ....|..+...|...+++...+.-+.++..++.+...+....++.+
T Consensus 10 ~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 10 LKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp HHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 333334567999984 5678999999999888887777766666666665555543344444
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=69.56 E-value=2.9 Score=36.08 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~ 146 (498)
+.++-+++++|+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3567789999999999985
No 325
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=69.53 E-value=3.4 Score=39.39 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=19.0
Q ss_pred HHHHhhcCCc--EEEEcCCCchHHHH
Q 010876 123 GWPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 123 ~i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
.+..++.|.+ +++-++||||||..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 4455678887 67779999999986
No 326
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=69.49 E-value=3.2 Score=39.65 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=18.8
Q ss_pred HHHHhhcCCc--EEEEcCCCchHHHH
Q 010876 123 GWPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 123 ~i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
.+..++.|.+ +++-++||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 3445678887 67779999999986
No 327
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=69.30 E-value=3.2 Score=38.59 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~ 147 (498)
....+++.+++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4567999999999999754
No 328
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=69.11 E-value=2.3 Score=40.17 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=17.1
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~ 146 (498)
+..|..+++++|||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34688999999999999973
No 329
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=69.06 E-value=2.2 Score=35.80 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 010876 132 DLIGIAETGSGKTLAY 147 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~ 147 (498)
-+++++++|||||+.+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3788999999999864
No 330
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=68.99 E-value=2.2 Score=39.00 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=27.9
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhh--cCCcEEEEcCCCchHHHHH
Q 010876 92 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 92 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l--~~~~~i~~a~TGsGKT~~~ 147 (498)
..+|+++.-.+.+.+.+...-.. .. ....+..+- -.+.+++.+|+|+|||+.+
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 35577765555555555432100 00 012222211 1235999999999999753
No 331
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=68.89 E-value=6.9 Score=34.72 Aligned_cols=74 Identities=26% Similarity=0.333 Sum_probs=48.3
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----cc---cCCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----AR---GLDVK 405 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~~---Gldi~ 405 (498)
+.++||.++++.-+..+++.++.. ++.+..++++..... .......+..+|+|+|. .+ .. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 347999999999999988888754 566666666432111 11122346778999993 22 12 47788
Q ss_pred CCCEEEEcC
Q 010876 406 DVKYVINYD 414 (498)
Q Consensus 406 ~v~~VI~~~ 414 (498)
++.+||.-.
T Consensus 175 ~~~~lViDE 183 (245)
T 3dkp_A 175 SVEWLVVDE 183 (245)
T ss_dssp TCCEEEESS
T ss_pred cCcEEEEeC
Confidence 888887543
No 332
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=68.48 E-value=3.5 Score=39.71 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=18.6
Q ss_pred HHHhhcCCc--EEEEcCCCchHHHHH
Q 010876 124 WPMALKGRD--LIGIAETGSGKTLAY 147 (498)
Q Consensus 124 i~~~l~~~~--~i~~a~TGsGKT~~~ 147 (498)
+..++.|.+ +++-++||||||...
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 444667877 677799999999873
No 333
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=68.40 E-value=2.9 Score=38.60 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
.+.+++.+|+|+|||+.+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999997643
No 334
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=68.30 E-value=3.5 Score=37.15 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=18.1
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~~~l 149 (498)
+.++.+++.+++|||||+.+-+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3488999999999999986443
No 335
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=68.14 E-value=3.4 Score=35.06 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchHHHH
Q 010876 131 RDLIGIAETGSGKTLA 146 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~ 146 (498)
+-+.+.+|+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999985
No 336
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=68.00 E-value=3.4 Score=39.65 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=18.1
Q ss_pred HHHhhcCCc--EEEEcCCCchHHHH
Q 010876 124 WPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 124 i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
+..++.|.+ +++.++||||||..
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCccee
Confidence 444667877 67779999999986
No 337
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=67.98 E-value=11 Score=36.11 Aligned_cols=19 Identities=42% Similarity=0.513 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
..++++.+|+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997643
No 338
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=67.95 E-value=24 Score=36.64 Aligned_cols=77 Identities=14% Similarity=0.271 Sum_probs=56.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHH---Hh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
+.++||.|+++.-+..+.+.+... ++.+..++++......... +. ...+|+|+| +.+. ..+++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~~l~-~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLLR-EGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----CCCS-TTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----chhh-CCcccCCC
Confidence 568999999999999999988876 3677778877654433322 33 357899999 3333 35567889
Q ss_pred cEEEeccchhh
Q 010876 242 TYLVLDEADRM 252 (498)
Q Consensus 242 ~~vI~DE~h~~ 252 (498)
++||+-|++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999998754
No 339
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=67.84 E-value=17 Score=34.57 Aligned_cols=76 Identities=12% Similarity=0.164 Sum_probs=55.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH---HHHh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
..++||.|+++.-+..+++.+.+. ++.+..++++.+..+.. ..+. ....|+|+| +.+. ..+++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITT-----NVLA-RGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC-----GGGS-SSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chhh-cCCCcccC
Confidence 467999999999999999988876 35678888887654432 2333 347899999 3333 35678889
Q ss_pred cEEEeccchh
Q 010876 242 TYLVLDEADR 251 (498)
Q Consensus 242 ~~vI~DE~h~ 251 (498)
++||.-+...
T Consensus 313 ~~Vi~~~~p~ 322 (395)
T 3pey_A 313 SMVVNYDLPT 322 (395)
T ss_dssp EEEEESSCCB
T ss_pred CEEEEcCCCC
Confidence 9998766543
No 340
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=67.57 E-value=3.3 Score=39.67 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=19.4
Q ss_pred HHHHhhcCCc--EEEEcCCCchHHHH
Q 010876 123 GWPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 123 ~i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
.+..++.|.+ +++.++||||||..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 4566778887 67779999999986
No 341
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=67.39 E-value=2.4 Score=35.84 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
+..+++.+++|||||+.+-.
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44688999999999986443
No 342
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=67.26 E-value=2.3 Score=35.69 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHHH
Q 010876 129 KGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~ 146 (498)
.|.-+.+++|+|||||+.
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 455688999999999975
No 343
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=67.23 E-value=5.5 Score=36.66 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=17.7
Q ss_pred hhcCCcEEEEcCCCchHHHHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~~~l 149 (498)
+..|.-+++.|++|+|||+.+..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 34566799999999999975443
No 344
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=67.13 E-value=3.6 Score=40.02 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=20.2
Q ss_pred HHHHHhhcCCc--EEEEcCCCchHHHH
Q 010876 122 QGWPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 122 ~~i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
..+..++.|.+ +++.++||||||..
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 35666788887 67779999999986
No 345
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=67.09 E-value=3 Score=39.09 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
.+++++|||||||..+..
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999986443
No 346
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=67.06 E-value=3.8 Score=35.94 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=15.9
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~ 146 (498)
+..|+-+.+++|+|+|||+.
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34577899999999999974
No 347
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=66.84 E-value=4.1 Score=40.07 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=18.4
Q ss_pred HHHhhcCCc--EEEEcCCCchHHHH
Q 010876 124 WPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 124 i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
+..++.|.+ +++.+.||||||..
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEE
Confidence 445678887 67779999999986
No 348
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=66.71 E-value=3 Score=35.63 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchHHHH
Q 010876 131 RDLIGIAETGSGKTLA 146 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~ 146 (498)
+-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 349
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=66.71 E-value=2.4 Score=35.49 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
+..+++++++|||||+.+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4468899999999998643
No 350
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=66.71 E-value=4.1 Score=39.07 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=19.7
Q ss_pred HHHHhhcCCc--EEEEcCCCchHHHH
Q 010876 123 GWPMALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 123 ~i~~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
.+..++.|.+ +++-++||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 5666788887 67779999999986
No 351
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=66.48 E-value=3.7 Score=35.34 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~ 148 (498)
.+.-+++.+++|||||+.+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999998543
No 352
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=66.43 E-value=31 Score=26.72 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=37.6
Q ss_pred HHHHHhhcCCCeEEEEeCC------cccHHHHHHHHhhCCCC---eEEecCCCCHHHHHHHHH
Q 010876 329 VKLLEDIMDGSRILIFMDT------KKGCDQITRQLRMDGWP---ALSIHGDKSQAERDWVLS 382 (498)
Q Consensus 329 ~~~l~~~~~~~~vlIf~~s------~~~~~~l~~~L~~~~~~---~~~lh~~~~~~~r~~~~~ 382 (498)
.+.++......+++||..+ ...|....+.|...+++ ...+.-....+.++.+.+
T Consensus 6 ~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~ 68 (121)
T 3gx8_A 6 RKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68 (121)
T ss_dssp HHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHH
Confidence 3445555556799999984 77899999999998887 555555555555555443
No 353
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=65.88 E-value=14 Score=35.73 Aligned_cols=19 Identities=21% Similarity=0.067 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
|.-+.+.+|+|+|||..+.
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 4568999999999997543
No 354
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=65.84 E-value=3.4 Score=39.75 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=17.1
Q ss_pred HhhcCCc--EEEEcCCCchHHHH
Q 010876 126 MALKGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 126 ~~l~~~~--~i~~a~TGsGKT~~ 146 (498)
.++.|.+ +++-++||||||..
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeE
Confidence 4567877 67779999999986
No 355
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=65.73 E-value=7 Score=47.44 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHHH---HHhhcCCcEEEEcCCCchHHHHHHH
Q 010876 100 FPDYVMQEISKAGFFEPTPIQ-AQGW---PMALKGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 100 l~~~~~~~l~~~~~~~~~~~Q-~~~i---~~~l~~~~~i~~a~TGsGKT~~~~l 149 (498)
+.+.+.+.+.+.++ .+.+.+ .+++ ..+...+.++++||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 34456666667776 455554 2232 3344567799999999999987543
No 356
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=65.66 E-value=3.3 Score=38.31 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~ 148 (498)
..+++.+|+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358889999999997643
No 357
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=65.36 E-value=4 Score=35.32 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.2
Q ss_pred HhhcCCcEEEEcCCCchHHHH
Q 010876 126 MALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 126 ~~l~~~~~i~~a~TGsGKT~~ 146 (498)
.+..|+-+.+.+|+|||||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456788899999999999984
No 358
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=65.30 E-value=40 Score=25.32 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=36.4
Q ss_pred CCCeEEEEeC------CcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHH
Q 010876 337 DGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 384 (498)
Q Consensus 337 ~~~~vlIf~~------s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f 384 (498)
...+++||.. +...|..+...|...++....+.=+.+...++......
T Consensus 13 ~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 13 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 3457889987 55689999999999999988887777766666555444
No 359
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=65.06 E-value=3.9 Score=33.92 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=16.0
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
+++++.++.|||||+++-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999987544
No 360
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=64.93 E-value=14 Score=36.41 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=18.8
Q ss_pred hhcCCcEEEEcCCCchHHHHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~~~l 149 (498)
+..|+.+++.++.|+|||..+..
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~~ 170 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQE 170 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHHH
Confidence 45788999999999999976443
No 361
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=64.73 E-value=3.1 Score=39.98 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=15.8
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~ 146 (498)
..+..+++++|||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566789999999999975
No 362
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=64.69 E-value=3 Score=35.87 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~ 147 (498)
.+.-+++.++.|||||++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556899999999999864
No 363
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=64.48 E-value=49 Score=31.20 Aligned_cols=16 Identities=25% Similarity=0.167 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 010876 132 DLIGIAETGSGKTLAY 147 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~ 147 (498)
.+++++++|+|||..+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4888999999999754
No 364
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=64.44 E-value=12 Score=41.97 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=39.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhcCC----CCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 010876 132 DLIGIAETGSGKTLAYLLPAIVHVNAQP----FLAPGDGPIVLVLAPTRELAVQIQQESTKF 189 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l~~l~~~~~~~----~~~~~~~~~vlvl~P~~~La~q~~~~~~~~ 189 (498)
..+|.|.-|||||.+-.--++..+.... ....-....+|+|+=|+.=|.++.+.+.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4599999999999875555555554321 001112346999999998888887777653
No 365
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=64.31 E-value=10 Score=43.14 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=29.9
Q ss_pred cccccEEEeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEc
Q 010876 238 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 278 (498)
Q Consensus 238 l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 278 (498)
+++.+++|+||+=.-+|..-...+.+.+..+.+++-+|+.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 45778999999998888776777777776665555555544
No 366
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=64.24 E-value=3.8 Score=38.75 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
-+++++|||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 478899999999976543
No 367
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=64.23 E-value=16 Score=34.22 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=51.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH---HHHh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
+.++||.|+++.-+..+++.+.+. ++.+..++++.+..+.. ..+. ....|+|+| +.+.. .+++.++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~~-Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVMSR-GIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTHHH-HCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCCcccC
Confidence 556899999999999999998876 46788888887654433 2222 357899999 33332 3457778
Q ss_pred cEEEeccc
Q 010876 242 TYLVLDEA 249 (498)
Q Consensus 242 ~~vI~DE~ 249 (498)
++||.-+.
T Consensus 308 ~~Vi~~~~ 315 (367)
T 1hv8_A 308 NCVINYHL 315 (367)
T ss_dssp SEEEESSC
T ss_pred CEEEEecC
Confidence 88876443
No 368
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=64.18 E-value=4.9 Score=34.11 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~~~l 149 (498)
..+.-+++.+++|||||+++-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3456789999999999986443
No 369
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=64.13 E-value=3.1 Score=35.84 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
.-++++|++|||||+.+-.
T Consensus 19 ~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SCEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3689999999999986433
No 370
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=64.09 E-value=19 Score=35.06 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=50.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHH---HHh-cCCcEEEcChHHHHHHHhccCcccccccEE
Q 010876 169 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 244 (498)
Q Consensus 169 vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~v 244 (498)
+||.|+++.-|..+++.+.+. ++.+..++|+....+... .+. ....|+||| +.+. ..+++.++++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~v~~-rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT-----SVAS-RGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC-----GGGT-SSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc-----hhhh-CCCCcccCCEE
Confidence 999999999999999888875 467888998876544332 233 347899999 4443 35667888888
Q ss_pred Eec
Q 010876 245 VLD 247 (498)
Q Consensus 245 I~D 247 (498)
|.-
T Consensus 373 I~~ 375 (434)
T 2db3_A 373 INY 375 (434)
T ss_dssp EES
T ss_pred EEE
Confidence 753
No 371
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=63.98 E-value=20 Score=34.46 Aligned_cols=72 Identities=10% Similarity=0.288 Sum_probs=51.7
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH---HHHh-cCCcEEEcChHHHHHHHhccCccccccc
Q 010876 167 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVT 242 (498)
Q Consensus 167 ~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~ 242 (498)
.++||.|+++.-+..+++.+.+. ++.+..++|+....+.. ..+. ....|+|+| +.+. ..+++.+++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-----DVWA-RGLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----GGGS-SSCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chhh-CcCCcccCC
Confidence 47999999999999999888875 36678888887654433 2222 357899999 3333 356778888
Q ss_pred EEEecc
Q 010876 243 YLVLDE 248 (498)
Q Consensus 243 ~vI~DE 248 (498)
+||.-+
T Consensus 347 ~Vi~~~ 352 (410)
T 2j0s_A 347 LIINYD 352 (410)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 888643
No 372
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=63.96 E-value=6.4 Score=36.59 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
-+++.+++|+|||+....
T Consensus 106 vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHH
Confidence 477889999999976443
No 373
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=63.85 E-value=3.1 Score=35.31 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
.-+++++++|||||+.+-.
T Consensus 6 ~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986433
No 374
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=63.67 E-value=6.5 Score=34.31 Aligned_cols=19 Identities=32% Similarity=0.115 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~ 147 (498)
.|.-+.+.+|+|+|||+.+
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566899999999999753
No 375
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=63.49 E-value=2.9 Score=35.51 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
.-+++.+++|||||+.+-.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578999999999986543
No 376
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=67.35 E-value=1.5 Score=36.82 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=47.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhH---HHHh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
+.++||.|+++.-+..+++.+.+. ++.+..++|+.+..+.. ..+. ....|+|+| +.+.. .+++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAAR-GIDIPDV 99 (170)
Confidence 456999999999988888887765 46677788876544332 2222 246789998 33222 3456667
Q ss_pred cEEEecc
Q 010876 242 TYLVLDE 248 (498)
Q Consensus 242 ~~vI~DE 248 (498)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 7766543
No 377
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=63.29 E-value=3.9 Score=35.16 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l 149 (498)
.+.-+++.+++|||||+.+-.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 455688999999999986433
No 378
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=63.27 E-value=4.4 Score=35.85 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
...+++.+++|||||+++-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999986544
No 379
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=63.24 E-value=7.1 Score=36.27 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCchHHHH
Q 010876 130 GRDLIGIAETGSGKTLA 146 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~ 146 (498)
+.-+.+.+|+|||||+.
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 44578889999999975
No 380
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=63.20 E-value=31 Score=35.86 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=55.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHH---Hh-cCCcEEEcChHHHHHHHhccCcccccc
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 241 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~ 241 (498)
+.++||.|+++..+..+.+.+.+.+ +.+..++++......... +. ...+|+|+| +.+. ..+++..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l~-~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHG----IRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLR-EGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCC-TTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC----CCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chhh-cCccCCCC
Confidence 5689999999999999999888764 677778877654433322 33 347899999 3333 35567888
Q ss_pred cEEEeccchhh
Q 010876 242 TYLVLDEADRM 252 (498)
Q Consensus 242 ~~vI~DE~h~~ 252 (498)
++||+=+++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 99988887653
No 381
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=62.91 E-value=4.9 Score=34.72 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.1
Q ss_pred EEEEcCCCchHHHHHHH
Q 010876 133 LIGIAETGSGKTLAYLL 149 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l 149 (498)
.++.|++|||||+.++.
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 68899999999986544
No 382
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=62.86 E-value=5.4 Score=31.55 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=33.2
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHhhCCCC-eEEecCCCC
Q 010876 334 DIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 373 (498)
Q Consensus 334 ~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~ 373 (498)
.+..+.+++|+|.+-..+...+..|+..|+. +..+.|++.
T Consensus 78 ~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 78 HFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred hCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3445678999999988899999999999985 888899864
No 383
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=62.83 E-value=17 Score=38.69 Aligned_cols=80 Identities=8% Similarity=0.008 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHh----hCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc-c---
Q 010876 327 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR----MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV-A--- 398 (498)
Q Consensus 327 ~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~----~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~--- 398 (498)
.++.++.....+..++|.|+|+.-|...++.+. ..++.+..+.|+++...|.... .++|+|+|+- +
T Consensus 104 f~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fD 177 (853)
T 2fsf_A 104 ATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFD 177 (853)
T ss_dssp HHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHH
Confidence 333444333345689999999998877666654 4589999999999986655433 3789999952 2
Q ss_pred --ccc-------CCCCCCCEEEE
Q 010876 399 --ARG-------LDVKDVKYVIN 412 (498)
Q Consensus 399 --~~G-------ldi~~v~~VI~ 412 (498)
..+ +....+.++|.
T Consensus 178 yLrd~~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 178 YLRDNMAFSPEERVQRKLHYALV 200 (853)
T ss_dssp HHHHTTCSSGGGCCCCSCCEEEE
T ss_pred HHHhhhhccHhHhcccCCcEEEE
Confidence 222 45567777773
No 384
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=62.66 E-value=5.3 Score=32.57 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q 010876 132 DLIGIAETGSGKTLA 146 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~ 146 (498)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 378899999999975
No 385
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=62.62 E-value=4.8 Score=35.38 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=15.8
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~ 146 (498)
+..|+-+++++|.|+|||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44677799999999999984
No 386
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=62.62 E-value=17 Score=28.23 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=40.7
Q ss_pred HHhhcCCCeEEEEeC------CcccHHHHHHHHhhCCCC-eEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 010876 332 LEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWP-ALSIHGDKSQAERDWVLSEFKAGKSPIM 392 (498)
Q Consensus 332 l~~~~~~~~vlIf~~------s~~~~~~l~~~L~~~~~~-~~~lh~~~~~~~r~~~~~~f~~g~~~vL 392 (498)
+++.....+++||.. ....|....+.|.+.+++ ...+.=..+.+.++.+.+......++.+
T Consensus 13 v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~v 80 (118)
T 2wem_A 13 LDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQV 80 (118)
T ss_dssp HHHHHHHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHhccCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeE
Confidence 334444568999998 478899999999999985 7777666666666555443333334444
No 387
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=62.54 E-value=5.3 Score=34.69 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=14.4
Q ss_pred EEEEcCCCchHHHHHHH
Q 010876 133 LIGIAETGSGKTLAYLL 149 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l 149 (498)
+++.+|+||||++.+..
T Consensus 3 Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68889999999987655
No 388
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=62.51 E-value=11 Score=39.27 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=48.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHhcCCcEEEcChHHHHHHHhccCcccccccEEE
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLV 245 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI 245 (498)
+.++||.++++.-++++++.+.+. ++.+..++++.+.... ...+.+|+|+| +.+..+. ++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerGI-DId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTGY-TGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHHC-CCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHccC-CCC-CcEEE
Confidence 567999999999999999988865 4778899998865432 23456899999 4554433 343 77766
No 389
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=62.48 E-value=13 Score=39.72 Aligned_cols=71 Identities=13% Similarity=0.169 Sum_probs=47.1
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccc----c-cC-CCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA----R-GL-DVKD 406 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~----~-Gl-di~~ 406 (498)
..++||.|+++.-+..+...++.. ++.+..+||+.+...+...+. ...+|+|+|. .+. . .+ .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 568999999999888887777654 899999999987655433222 3578999993 222 2 23 5566
Q ss_pred CCEEEE
Q 010876 407 VKYVIN 412 (498)
Q Consensus 407 v~~VI~ 412 (498)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 390
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=62.25 E-value=8.2 Score=38.88 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=49.7
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccc----cc-C-CCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA----RG-L-DVKD 406 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~----~G-l-di~~ 406 (498)
..++||+|+++.-+..+.+.++.. ++.+..++|+.+...+...+. ...+|+|+|. .+. .+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999999888877777654 889999999986554322221 2478999993 332 22 3 5666
Q ss_pred CCEEEEc
Q 010876 407 VKYVINY 413 (498)
Q Consensus 407 v~~VI~~ 413 (498)
+++||.-
T Consensus 128 ~~~vViD 134 (555)
T 3tbk_A 128 FTLMIFD 134 (555)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 7877753
No 391
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=62.12 E-value=8.8 Score=37.60 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=45.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHH-hcCCcEEEcChHHHHHHHhccCcccccccEE
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYL 244 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~v 244 (498)
+.++||+||++.-++.+++.+.+. ++++..+++.. .......+ ....+|+||| +.+..+ +++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT-----~v~e~G-iDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITT-----DISEMG-ANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEEC-----GGGGTS-CCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEEC-----chHHcC-cccC-CcEE
Confidence 346999999999999999999886 46788888763 22222333 3457999999 555543 3444 4444
No 392
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=62.11 E-value=4.3 Score=40.23 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
++++++.+|+|+|||..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3579999999999997644
No 393
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=62.00 E-value=8 Score=32.57 Aligned_cols=20 Identities=30% Similarity=0.125 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
+.-+++.+++|||||+.+-.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 44588999999999986544
No 394
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=61.89 E-value=4.6 Score=34.19 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 010876 132 DLIGIAETGSGKTLAY 147 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~ 147 (498)
-+++++++|||||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4688999999999853
No 395
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=61.89 E-value=5.1 Score=37.03 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.1
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
.+++.+|+|+|||..+-.
T Consensus 49 ~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEESCSSSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 599999999999986443
No 396
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=61.80 E-value=5.1 Score=33.47 Aligned_cols=18 Identities=28% Similarity=0.277 Sum_probs=15.0
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
.+++.+++|||||+.+-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 589999999999986543
No 397
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=61.67 E-value=6.4 Score=29.82 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=32.8
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHhhCCCC-eEEecCCCC
Q 010876 334 DIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 373 (498)
Q Consensus 334 ~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~ 373 (498)
.+....+++|+|.+-..+...+..|+..|+. +..+.|++.
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4445678999999988899999999999995 888888753
No 398
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=61.59 E-value=39 Score=32.55 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHhh---cCCcEEEEcCCCchHHHHHH
Q 010876 116 PTPIQAQGWPMAL---KGRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 116 ~~~~Q~~~i~~~l---~~~~~i~~a~TGsGKT~~~~ 148 (498)
|-..=.++|+.++ .|+.+.+.+++|+|||....
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 3445556666654 58899999999999997643
No 399
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=61.54 E-value=3.7 Score=35.73 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
.+++.+++|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986544
No 400
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=61.45 E-value=5.3 Score=33.53 Aligned_cols=15 Identities=27% Similarity=0.208 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q 010876 132 DLIGIAETGSGKTLA 146 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~ 146 (498)
-.++.+++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 478899999999975
No 401
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=61.33 E-value=3.6 Score=34.81 Aligned_cols=18 Identities=22% Similarity=0.043 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
-+++.+++|||||+.+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986443
No 402
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=61.23 E-value=4.8 Score=34.94 Aligned_cols=33 Identities=15% Similarity=0.044 Sum_probs=22.1
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCchHHHHHHH
Q 010876 116 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 116 ~~~~Q~~~i~~~l~~~~~i~~a~TGsGKT~~~~l 149 (498)
.++.++... .+..+.-+++.+++|||||+.+-.
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHHHHH
Confidence 344555542 344566788999999999986443
No 403
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=61.18 E-value=12 Score=37.44 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
+.++++.++||||||.+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp SCSEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999763
No 404
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=61.08 E-value=9.3 Score=39.89 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=46.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHh-cCCcEEEcChHHHHHHHhccCcccccccEE
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 244 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~v 244 (498)
+.++||+||+++-++.+++.+.+. ++.+..+++.. .......+. ...+|+||| +.+.. .+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaT-----dv~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITT-----DISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHHHGGGGGTCCCSEEEEC-----GGGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHHHHHHHHCCCceEEEEC-----chhhc-ceeeC-CcEE
Confidence 457999999999999988888775 57788888842 222222333 347899999 55544 34555 6766
Q ss_pred E
Q 010876 245 V 245 (498)
Q Consensus 245 I 245 (498)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 405
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=61.04 E-value=4.5 Score=39.18 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
-+++.+|||+|||..+..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 367899999999976443
No 406
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=61.03 E-value=9.9 Score=37.71 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLLPAIVHV 155 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l~~l~~~ 155 (498)
..++++.+|+|+|||..+.. +...+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~-la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG-LAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH-HHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH-HHHHH
Confidence 45799999999999986543 33444
No 407
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=60.93 E-value=3.4 Score=35.65 Aligned_cols=20 Identities=30% Similarity=0.182 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
+.-+++.++.|||||+.+-.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 44588999999999986443
No 408
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=60.74 E-value=6.1 Score=36.95 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHHH
Q 010876 132 DLIGIAETGSGKTLA 146 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~ 146 (498)
-+++.++.|||||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 378899999999984
No 409
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=60.69 E-value=25 Score=33.70 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=51.4
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-----cc-cccCCCCC
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VA-ARGLDVKD 406 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~ 406 (498)
...++||.++++.-+..+++.++. .+..+..++++..... ....+..+..+|+|+|. .+ ...+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 445899999999998888888765 3567777788776543 34456667889999993 22 22355666
Q ss_pred CCEEEE
Q 010876 407 VKYVIN 412 (498)
Q Consensus 407 v~~VI~ 412 (498)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777764
No 410
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=60.67 E-value=8 Score=36.22 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
-+.+.+++|+|||+....
T Consensus 107 vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477889999999976443
No 411
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=60.54 E-value=3.4 Score=38.12 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHH
Q 010876 132 DLIGIAETGSGKTLAY 147 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~ 147 (498)
-++++|++|||||+.+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999853
No 412
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=60.47 E-value=5 Score=35.23 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
.+-+++.+|+||||++.+..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34578889999999987654
No 413
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=60.22 E-value=12 Score=37.94 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=17.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 131 RDLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
.++++.+.||||||.+.- .++..+.
T Consensus 215 pHlLIaG~TGSGKS~~L~-tlI~sLl 239 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVN-AMLLSIL 239 (574)
T ss_dssp CCEEEECCTTSSHHHHHH-HHHHHHH
T ss_pred CeeEEECCCCCCHHHHHH-HHHHHHH
Confidence 579999999999997633 3444333
No 414
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=60.01 E-value=23 Score=37.61 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=51.0
Q ss_pred CCCeEEEEeCCcccHHHHHHHHh----hCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----c-------
Q 010876 337 DGSRILIFMDTKKGCDQITRQLR----MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----A------- 399 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~----~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~------- 399 (498)
.+..++|.|+++.-|...++.+. ..|+.+..+.|+++..+|.... .++|+|+|+ -+ .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 45689999999998877766664 4589999999999987665542 378999994 22 1
Q ss_pred ccCCCCCCCEEE
Q 010876 400 RGLDVKDVKYVI 411 (498)
Q Consensus 400 ~Gldi~~v~~VI 411 (498)
..+++..++++|
T Consensus 197 ~~l~lr~~~~lV 208 (844)
T 1tf5_A 197 EQMVQRPLHFAV 208 (844)
T ss_dssp GGCCCCCCCEEE
T ss_pred hhhcccCCCEEE
Confidence 235667778776
No 415
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=59.85 E-value=5.3 Score=37.65 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~ 148 (498)
..+++.+|+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 569999999999997543
No 416
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=59.45 E-value=4.1 Score=34.72 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l 149 (498)
.+.-+++.+++|||||+++-.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 345689999999999986433
No 417
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=59.06 E-value=10 Score=31.71 Aligned_cols=15 Identities=27% Similarity=0.065 Sum_probs=12.7
Q ss_pred cEEEEcCCCchHHHH
Q 010876 132 DLIGIAETGSGKTLA 146 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~ 146 (498)
-+.+.++.|||||+.
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999975
No 418
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=59.04 E-value=6.5 Score=33.06 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
..+++.+++|||||+++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3588999999999986543
No 419
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=59.02 E-value=10 Score=41.48 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=43.7
Q ss_pred CCCCcCCcccCC-C-CHHHHHHHHHCCCCC----CcHHHHHHHHHhhc---CCcEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 88 VPKPVKSFRDVG-F-PDYVMQEISKAGFFE----PTPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 88 ~~~~~~~f~~~~-l-~~~~~~~l~~~~~~~----~~~~Q~~~i~~~l~---~~~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
+--.+.+|..++ + ++...+.+....... ++.+-..|+..++. .+.+|+.+++|+|||.+.-+ +++++.
T Consensus 93 iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~-im~yLa 169 (1052)
T 4anj_A 93 ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF-VLRYLT 169 (1052)
T ss_dssp EEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred EEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH-HHHHHH
Confidence 333456677664 3 677777776544333 34456667766653 45699999999999987544 455554
No 420
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=58.92 E-value=5.5 Score=34.59 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
.+++.+++|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986443
No 421
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=58.88 E-value=9.6 Score=30.48 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=33.7
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHhhCCC-CeEEecCCCC
Q 010876 334 DIMDGSRILIFMDTKKGCDQITRQLRMDGW-PALSIHGDKS 373 (498)
Q Consensus 334 ~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~-~~~~lh~~~~ 373 (498)
.+..+.+++|+|.+-..+...+..|+..|+ ++..+.|++.
T Consensus 78 ~l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 78 GLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CCCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred cCCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 344567899999999899999999999999 5888999863
No 422
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=58.78 E-value=15 Score=27.81 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=32.6
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010876 335 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 373 (498)
Q Consensus 335 ~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 373 (498)
+.++.+++|+|.+-..+...+..|+..|+....+.|++.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 345678999999988899999999999986678888864
No 423
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=58.73 E-value=4.2 Score=34.18 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
+..+++.+++|||||+++-
T Consensus 5 g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4557899999999998643
No 424
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=58.60 E-value=5.6 Score=33.57 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
-+++.+++|||||+++-.
T Consensus 8 ~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999986443
No 425
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=58.56 E-value=22 Score=28.38 Aligned_cols=63 Identities=13% Similarity=0.003 Sum_probs=41.8
Q ss_pred HHHhhcCCCeEEEEeC------CcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 010876 331 LLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 393 (498)
Q Consensus 331 ~l~~~~~~~~vlIf~~------s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLv 393 (498)
.+.+.....+++||+. ....|..+...|...+++...+.-..+++.++.+........+++++
T Consensus 27 ~v~~~i~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf 95 (135)
T 2wci_A 27 KIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLW 95 (135)
T ss_dssp HHHHHHHHCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHhccCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEE
Confidence 3333333458999987 56789999999999999888777666666666655444333444443
No 426
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=58.55 E-value=6.2 Score=34.40 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
+..+++.+++|||||+.+-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34588999999999986543
No 427
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=58.39 E-value=25 Score=43.49 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=31.6
Q ss_pred CHHHHHHHHHCCCCCCcHHHH-HHHH---HhhcCCcEEEEcCCCchHHHHHHH
Q 010876 101 PDYVMQEISKAGFFEPTPIQA-QGWP---MALKGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 101 ~~~~~~~l~~~~~~~~~~~Q~-~~i~---~~l~~~~~i~~a~TGsGKT~~~~l 149 (498)
.+.+.+.+.+.++ ++.+.+. +++. .+.....++++||||||||.++-.
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 3455666667777 5555543 3332 233456799999999999987543
No 428
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=58.33 E-value=4.4 Score=35.78 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=12.0
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~ 146 (498)
..|+-+.+.+|+|||||+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4566788999999999975
No 429
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=58.08 E-value=6 Score=32.79 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
+.+++.+++|||||+++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999986443
No 430
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=58.01 E-value=5.6 Score=34.92 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
...+++.+++|||||+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346899999999999864
No 431
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=57.87 E-value=5.7 Score=40.86 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHH
Q 010876 132 DLIGIAETGSGKTLA 146 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~ 146 (498)
++++.+|+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 432
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=57.84 E-value=6.7 Score=34.24 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
..+++.+++|||||+++-.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp CCEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999986544
No 433
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=57.83 E-value=4.7 Score=34.62 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHH
Q 010876 132 DLIGIAETGSGKTLAY 147 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~ 147 (498)
-+++.+++|||||+++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999864
No 434
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=57.72 E-value=19 Score=38.18 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=52.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHh-------cCCCCceEEEEeCCCCCchhHHHHh---------cCCcEEEcChHHHHH
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKF-------GASSKIKSTCIYGGVPKGPQVRDLQ---------KGVEIVIATPGRLID 229 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~Ivi~T~~~l~~ 229 (498)
...+||.+|++.-+..+++.+.+. ....++.+..++++.+..++...+. ....|+||| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 457999999999999988888752 2235688999999887655543332 235799999 4
Q ss_pred HHhccCcccccccEEEe
Q 010876 230 MLESHNTNLRRVTYLVL 246 (498)
Q Consensus 230 ~l~~~~~~l~~~~~vI~ 246 (498)
.+.. .+++..+.+||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 4443 445777887764
No 435
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=57.69 E-value=3 Score=37.73 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
.+.+++.+|+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999997643
No 436
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=57.56 E-value=8.5 Score=32.58 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=23.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 188 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~ 188 (498)
+++.+++|||||.-+.- +... +..++|++.....-.++.+.+..
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~~-------~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIGD-------APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHCS-------CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHH-----HHhc-------CCCeEEEecCCCCCHHHHHHHHH
Confidence 67899999999964332 2211 22378888754333334444443
No 437
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=57.54 E-value=4.8 Score=33.24 Aligned_cols=18 Identities=28% Similarity=0.106 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
.+++.+++|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 378899999999986443
No 438
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=57.32 E-value=3.3 Score=35.79 Aligned_cols=18 Identities=33% Similarity=0.014 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCchHHHH
Q 010876 129 KGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~ 146 (498)
.+.-+.+.+++|||||+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 445578999999999985
No 439
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=57.21 E-value=6.1 Score=33.83 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
..+++.+++|||||+++-.
T Consensus 21 ~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999986443
No 440
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=57.12 E-value=6.5 Score=33.18 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHHH
Q 010876 132 DLIGIAETGSGKTLA 146 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~ 146 (498)
.+.+.+|.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999975
No 441
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=56.91 E-value=11 Score=41.94 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=52.6
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-----ccccccC-CC
Q 010876 331 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-----DVAARGL-DV 404 (498)
Q Consensus 331 ~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~Gl-di 404 (498)
++..+..+.++||.++++.-+...++.++.....+..++|+.+ .++..+|+|+| +.+..+- .+
T Consensus 220 i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l 288 (1108)
T 3l9o_A 220 IAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVM 288 (1108)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHH
T ss_pred HHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCcccc
Confidence 3333445679999999999999999999876568889999876 34678999999 3444443 35
Q ss_pred CCCCEEEE
Q 010876 405 KDVKYVIN 412 (498)
Q Consensus 405 ~~v~~VI~ 412 (498)
.++.+||.
T Consensus 289 ~~l~lVVI 296 (1108)
T 3l9o_A 289 REVAWVIF 296 (1108)
T ss_dssp HHEEEEEE
T ss_pred ccCCEEEE
Confidence 56777774
No 442
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=56.80 E-value=6.2 Score=34.49 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
..+.+.+++|||||+.+-+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999986443
No 443
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=56.45 E-value=5.4 Score=34.38 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l 149 (498)
.+.-+++.++.|||||+++-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHH
Confidence 355689999999999986543
No 444
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=56.35 E-value=62 Score=32.01 Aligned_cols=74 Identities=14% Similarity=0.040 Sum_probs=48.5
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchh---HHHHh-cCCcEEEcChHHHHHHHhccCcccccccE
Q 010876 168 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTY 243 (498)
Q Consensus 168 ~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~ 243 (498)
..++++.+..-+..+.+.+.+.+ .++..++|+...... ...+. ...+|+|+|+..+.. .+++.++++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 34444444666666777666643 378888888765433 22333 346899999766633 567888999
Q ss_pred EEeccch
Q 010876 244 LVLDEAD 250 (498)
Q Consensus 244 vI~DE~h 250 (498)
||+....
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9988777
No 445
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=56.27 E-value=13 Score=36.57 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=45.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHh-cCCcEEEcChHHHHHHHhccCcccccccEEE
Q 010876 167 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLV 245 (498)
Q Consensus 167 ~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~vI 245 (498)
.++||.||++.-++++++.+.+. ++.+..+++.... .....+. ...+|+||| +.+.. .+++.. ++||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT-----~v~~~-GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DISEM-GANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEEC-----GGGGS-SCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEEC-----CHHHh-CcCCCC-CEEE
Confidence 46999999999999999888765 4677777775532 2222233 347899999 55554 345556 6666
No 446
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=56.19 E-value=91 Score=26.29 Aligned_cols=128 Identities=13% Similarity=-0.024 Sum_probs=50.1
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCC-----CCCCCCCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 010876 128 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF-----LAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYG 202 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~-----~~~~~~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~ 202 (498)
+.|-.+-+....|-|=|+.+.+|+...-..... .....+.++|||-........+...+...+.. .+
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~---~v----- 89 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVS---EV----- 89 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCS---EE-----
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ee-----
Confidence 345567777889999898888886433221110 11123557888888877777777767665310 12
Q ss_pred CCCCchhHHHHhcCCcEEEcChHHHHHHHhcc--------CcccccccEEEeccchhhhcCCcHHHHHHHHHh---cCCC
Q 010876 203 GVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--------NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ---IRPD 271 (498)
Q Consensus 203 ~~~~~~~~~~~~~~~~Ivi~T~~~l~~~l~~~--------~~~l~~~~~vI~DE~h~~~~~~~~~~~~~i~~~---~~~~ 271 (498)
..+.+....+..+... ...-..+++||+|=. |.++.-...++.+... ..+.
T Consensus 90 ----------------~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~~G~el~~~lr~~~~~~~~~ 151 (206)
T 3mm4_A 90 ----------------EQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEMDGYEATREIRKVEKSYGVR 151 (206)
T ss_dssp ----------------EEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSSCHHHHHHHHHHHHHTTTCC
T ss_pred ----------------eeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCCCHHHHHHHHHhhhhhcCCC
Confidence 1223344444544332 111235788999832 2333312333333332 2467
Q ss_pred CcEEEEcCCC
Q 010876 272 RQTLYWSATW 281 (498)
Q Consensus 272 ~~~i~~SAT~ 281 (498)
..+|++|+..
T Consensus 152 ~piI~ls~~~ 161 (206)
T 3mm4_A 152 TPIIAVSGHD 161 (206)
T ss_dssp CCEEEEESSC
T ss_pred CcEEEEECCC
Confidence 8899999976
No 447
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=55.82 E-value=7.9 Score=33.04 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=26.2
Q ss_pred cccccEEEeccchhh--hcCCcHHHHHHHHHhcCCCCcEEEEcCCC
Q 010876 238 LRRVTYLVLDEADRM--LDMGFEPQIKKILSQIRPDRQTLYWSATW 281 (498)
Q Consensus 238 l~~~~~vI~DE~h~~--~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 281 (498)
..+.+++|+||+..+ .+..|...++.++.. ...+|+-+.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 567789999998766 344466666666653 23345445554
No 448
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=55.79 E-value=6.6 Score=33.50 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYL 148 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~ 148 (498)
.+++.+++|||||+.+-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36889999999998643
No 449
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=55.77 E-value=6.1 Score=38.95 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=29.9
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHH-HH-HHhhcCCcEEEEcCCCchHHHHHH
Q 010876 90 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQ-GW-PMALKGRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 90 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~-~i-~~~l~~~~~i~~a~TGsGKT~~~~ 148 (498)
.|..+|+++.-.+.+.+.+...-. .|.+.. .+ ......+.+++.+|+|+|||+.+-
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 345678887655556555543200 000000 00 001223579999999999997643
No 450
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=55.75 E-value=5.3 Score=33.81 Aligned_cols=17 Identities=29% Similarity=0.102 Sum_probs=14.0
Q ss_pred EEEEcCCCchHHHHHHH
Q 010876 133 LIGIAETGSGKTLAYLL 149 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l 149 (498)
+++.++.|||||+++-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986544
No 451
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=55.57 E-value=14 Score=29.87 Aligned_cols=38 Identities=8% Similarity=0.087 Sum_probs=31.0
Q ss_pred cCCCeEEEEeCCcccHHHHHHHHhhCCC-CeEEecCCCC
Q 010876 336 MDGSRILIFMDTKKGCDQITRQLRMDGW-PALSIHGDKS 373 (498)
Q Consensus 336 ~~~~~vlIf~~s~~~~~~l~~~L~~~~~-~~~~lh~~~~ 373 (498)
.++.+++|||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3456899999998888999999999999 4889999874
No 452
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=55.37 E-value=6.8 Score=33.66 Aligned_cols=16 Identities=31% Similarity=0.094 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHHH
Q 010876 132 DLIGIAETGSGKTLAY 147 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~ 147 (498)
.+.+.+++|||||+++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999853
No 453
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=55.35 E-value=5.5 Score=33.85 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=14.0
Q ss_pred EEEEcCCCchHHHHHHH
Q 010876 133 LIGIAETGSGKTLAYLL 149 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l 149 (498)
+++.++.|||||+++-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67889999999987544
No 454
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=55.29 E-value=2.9 Score=43.93 Aligned_cols=70 Identities=11% Similarity=0.245 Sum_probs=46.9
Q ss_pred CeEEEEeCCcccHHHH-HHHHhhCC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccccc-----------cC
Q 010876 339 SRILIFMDTKKGCDQI-TRQLRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAAR-----------GL 402 (498)
Q Consensus 339 ~~vlIf~~s~~~~~~l-~~~L~~~~---~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~-----------Gl 402 (498)
.++||.++++.-+..+ ++.|+... +.+..++|+.+..++...+. +..+|+|+| ..+.. .+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 6899999999988888 77776643 78999999876544332222 578999999 33332 24
Q ss_pred CCCCCCEEEE
Q 010876 403 DVKDVKYVIN 412 (498)
Q Consensus 403 di~~v~~VI~ 412 (498)
.+.++++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6667888774
No 455
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=55.25 E-value=5.5 Score=33.42 Aligned_cols=16 Identities=31% Similarity=0.216 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHHH
Q 010876 132 DLIGIAETGSGKTLAY 147 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~ 147 (498)
-+.+++++|||||+..
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999754
No 456
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=55.19 E-value=11 Score=34.87 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
+.-+.+.+|+|+|||+..
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345788999999999753
No 457
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=55.07 E-value=5.3 Score=35.52 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHH
Q 010876 129 KGRDLIGIAETGSGKTL 145 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~ 145 (498)
.|.-+.+.+|.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56678999999999997
No 458
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=54.96 E-value=5.8 Score=34.31 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCchHHHH
Q 010876 130 GRDLIGIAETGSGKTLA 146 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~ 146 (498)
+.-+.+.+|+|||||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44578889999999975
No 459
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=54.92 E-value=6.9 Score=33.94 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
.+++.+++|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999986543
No 460
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=54.88 E-value=6.1 Score=34.11 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l 149 (498)
.+.-+++.++.|||||+++-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345689999999999987544
No 461
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=54.82 E-value=8.2 Score=36.77 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=15.0
Q ss_pred cCCc--EEEEcCCCchHHHH
Q 010876 129 KGRD--LIGIAETGSGKTLA 146 (498)
Q Consensus 129 ~~~~--~i~~a~TGsGKT~~ 146 (498)
.|.+ +++.++||||||..
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 3766 68889999999986
No 462
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=54.47 E-value=7.2 Score=36.21 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHH
Q 010876 129 KGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~ 146 (498)
.|+-+.+++|+|||||+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577799999999999974
No 463
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=54.30 E-value=11 Score=38.95 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=18.4
Q ss_pred HhhcCCcEEEEcCCCchHHHHH
Q 010876 126 MALKGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 126 ~~l~~~~~i~~a~TGsGKT~~~ 147 (498)
.+..+..+++.+|+|+|||+.+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 3557789999999999999854
No 464
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=54.23 E-value=7.8 Score=33.74 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 010876 131 RDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 131 ~~~i~~a~TGsGKT~~~~l 149 (498)
..+++.+++|||||+++-.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986543
No 465
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=54.20 E-value=7.6 Score=37.11 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHH
Q 010876 132 DLIGIAETGSGKTLAY 147 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~ 147 (498)
-+++++|+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999864
No 466
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=54.06 E-value=6.8 Score=33.79 Aligned_cols=18 Identities=28% Similarity=-0.038 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
+.-+.+.+++|||||+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 334778899999999853
No 467
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=53.98 E-value=4.5 Score=33.97 Aligned_cols=20 Identities=20% Similarity=-0.024 Sum_probs=11.8
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
+.-+++.+++|||||+++-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34588999999999986443
No 468
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=53.95 E-value=7 Score=33.64 Aligned_cols=55 Identities=9% Similarity=0.179 Sum_probs=34.2
Q ss_pred CCeEEEEeCCcccHHH-HHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 010876 338 GSRILIFMDTKKGCDQ-ITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 396 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~-l~~~L~~---~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 396 (498)
..++||+|+++.-++. +.+.++. .++.+..++|+.....+...+. ...+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5689999999988777 5555543 3678888888754332211111 2578999993
No 469
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=53.93 E-value=5.7 Score=35.85 Aligned_cols=18 Identities=22% Similarity=0.038 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
-++++|++|||||+.+-.
T Consensus 6 lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 488999999999986443
No 470
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=53.79 E-value=7.3 Score=31.53 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=32.5
Q ss_pred hcCCCeEEEEeCCc--ccHHHHHHHHhhCCCCeEEecCCCC
Q 010876 335 IMDGSRILIFMDTK--KGCDQITRQLRMDGWPALSIHGDKS 373 (498)
Q Consensus 335 ~~~~~~vlIf~~s~--~~~~~l~~~L~~~~~~~~~lh~~~~ 373 (498)
+..+.+++|+|.+- ..+...+..|+..|+++..+.|++.
T Consensus 69 l~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 69 LSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CCTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 33566899999987 5888999999999999999999753
No 471
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=53.70 E-value=7.4 Score=33.32 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 010876 132 DLIGIAETGSGKTLAY 147 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~ 147 (498)
.+.+.+++|||||+.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999853
No 472
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=53.57 E-value=10 Score=38.05 Aligned_cols=50 Identities=8% Similarity=-0.017 Sum_probs=28.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 186 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~ 186 (498)
.|.-+++.|++|+|||..++- ++.++..+ .+..|+|++--. -..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~-~a~~~a~~------~g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQ-QALQWGTA------MGKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHH-HHHHHTTT------SCCCEEEEESSS-CHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHH-HHHHHHHh------cCCcEEEEeccC-CHHHHHHHH
Confidence 345589999999999975444 33333321 144577776532 233444443
No 473
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=53.56 E-value=8.7 Score=34.21 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~l 149 (498)
...+++.++.|||||+++-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34589999999999986544
No 474
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=53.20 E-value=62 Score=23.43 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=51.6
Q ss_pred cchhhhHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 010876 319 VSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 395 (498)
Q Consensus 319 ~~~~~k~~~l~~~l~~~~~~~~vlIf~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT 395 (498)
+..++....-+.-+.+...-.+++|..+.+.-..++-+.+.+.|+++..+-.+.+..+-++--....+.-+.|--.|
T Consensus 32 vndsdelkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvt 108 (134)
T 2lci_A 32 VNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVT 108 (134)
T ss_dssp ECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEEC
T ss_pred cCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecC
Confidence 34444444444444444455689999999998888888888999999998888777765555555444444444444
No 475
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=53.12 E-value=3.8 Score=38.68 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAYL 148 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~~ 148 (498)
..++++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4569999999999997543
No 476
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=52.55 E-value=23 Score=36.55 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=46.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCchhHHHHh-cCCcEEEcChHHHHHHHhccCcccccccEE
Q 010876 166 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 244 (498)
Q Consensus 166 ~~~vlvl~P~~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivi~T~~~l~~~l~~~~~~l~~~~~v 244 (498)
..++||.|+++.-++.+++.+.+. ++.+..+++.. .......+. ....|+||| +.+..+ +++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~-R~~~l~~F~~g~~~VLVaT-----dv~~rG-iDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKT-FDTEYPKTKLTDWDFVVTT-----DISEMG-ANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTT-HHHHTTHHHHSCCSEEEEC-----GGGGTT-CCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHH-HHHHHHhhcCCCcEEEEEC-----cHHHcC-cccC-ceEE
Confidence 346999999999999999999876 46778888742 222223333 357899999 555543 3453 6666
Q ss_pred E
Q 010876 245 V 245 (498)
Q Consensus 245 I 245 (498)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 477
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=52.48 E-value=8 Score=33.88 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=14.1
Q ss_pred EEEEcCCCchHHHHHHH
Q 010876 133 LIGIAETGSGKTLAYLL 149 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l 149 (498)
+++.+++|||||+++-.
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999986543
No 478
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=52.26 E-value=22 Score=38.98 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=39.3
Q ss_pred CcCCcccCCC-CHHHHHHHHHCCCCC--C--cHHHHHHHHHhhc---CCcEEEEcCCCchHHHHHHHHHHHHH
Q 010876 91 PVKSFRDVGF-PDYVMQEISKAGFFE--P--TPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHV 155 (498)
Q Consensus 91 ~~~~f~~~~l-~~~~~~~l~~~~~~~--~--~~~Q~~~i~~~l~---~~~~i~~a~TGsGKT~~~~l~~l~~~ 155 (498)
.+.+|..+++ ++.++..+....... | +.+=..|+..++. .+.+|+.|+.|+|||.+.-+ +++++
T Consensus 125 avNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-i~~yl 196 (1010)
T 1g8x_A 125 AVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKK-VIQYL 196 (1010)
T ss_dssp EECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHH-HHHHH
T ss_pred EecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHH-HHHHH
Confidence 3555666653 566666665443332 2 3445566666553 44699999999999977544 34443
No 479
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=52.24 E-value=33 Score=36.71 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=51.2
Q ss_pred CCCeEEEEeCCcccHHHHHHHHh----hCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----c-------
Q 010876 337 DGSRILIFMDTKKGCDQITRQLR----MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----A------- 399 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~----~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~------- 399 (498)
.+..++|.|+++.-|...++.+. ..|+.+..+.|+++..+|.... .++|+++|+ -+ .
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~ 224 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSL 224 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccH
Confidence 45689999999988876666654 4689999999999987765543 378999995 22 1
Q ss_pred ccCCCCCCCEEEE
Q 010876 400 RGLDVKDVKYVIN 412 (498)
Q Consensus 400 ~Gldi~~v~~VI~ 412 (498)
..++...++++|.
T Consensus 225 ~~l~lr~l~~lIV 237 (922)
T 1nkt_A 225 DDLVQRGHHYAIV 237 (922)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhccCCCCEEEE
Confidence 2356667777773
No 480
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=52.11 E-value=9.6 Score=32.86 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q 010876 132 DLIGIAETGSGKTLA 146 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~ 146 (498)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 468889999999975
No 481
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=52.07 E-value=18 Score=28.66 Aligned_cols=37 Identities=11% Similarity=0.325 Sum_probs=31.7
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCC-eEEecCCCC
Q 010876 337 DGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 373 (498)
Q Consensus 337 ~~~~vlIf~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~ 373 (498)
++.+++|+|.+=..+...+..|+..|+. +..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4568999999988888999999999995 888888874
No 482
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=52.06 E-value=34 Score=31.44 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=50.1
Q ss_pred CCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----cccCCCCCC
Q 010876 338 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 407 (498)
Q Consensus 338 ~~~vlIf~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~v 407 (498)
..++||.++++.-+..+++.++. .+..+..++|+.+..+.... +. ..+|+|+|. .+ ...+++.++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 56899999999999988888874 35788899999887654332 32 378999993 22 123456677
Q ss_pred CEEEE
Q 010876 408 KYVIN 412 (498)
Q Consensus 408 ~~VI~ 412 (498)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77764
No 483
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=51.97 E-value=6.4 Score=35.04 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.9
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~ 146 (498)
..|+-+.+.+|.|||||+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999973
No 484
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=51.96 E-value=8.2 Score=34.36 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
...+++.++.|||||+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999853
No 485
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=51.64 E-value=8.3 Score=32.85 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 010876 132 DLIGIAETGSGKTLAY 147 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~ 147 (498)
.+.+.+++|||||+++
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788899999999864
No 486
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=51.58 E-value=8.6 Score=37.77 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q 010876 130 GRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 130 ~~~~i~~a~TGsGKT~~~ 147 (498)
.+++++.+|+|+|||+.+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999864
No 487
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=51.57 E-value=5.1 Score=35.98 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYL 148 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~ 148 (498)
.+++++++|||||+.+-
T Consensus 34 ~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEESCGGGTTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999998643
No 488
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=51.42 E-value=8.9 Score=36.69 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q 010876 132 DLIGIAETGSGKTLA 146 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~ 146 (498)
-.++.++||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 378899999999985
No 489
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=51.02 E-value=7.1 Score=34.15 Aligned_cols=19 Identities=32% Similarity=0.197 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 010876 128 LKGRDLIGIAETGSGKTLA 146 (498)
Q Consensus 128 l~~~~~i~~a~TGsGKT~~ 146 (498)
..|.-+.+.+|.|||||+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577789999999999973
No 490
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=51.01 E-value=9.4 Score=34.21 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 010876 129 KGRDLIGIAETGSGKTLAY 147 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~ 147 (498)
.+..+.+.+++|||||+.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456889999999999853
No 491
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=50.99 E-value=9.1 Score=37.51 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
.+++++++|+|||+.+.-
T Consensus 101 vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CEEEECCSSSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999976444
No 492
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=50.98 E-value=18 Score=41.86 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=26.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCc
Q 010876 129 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 175 (498)
Q Consensus 129 ~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~ 175 (498)
.++.+++.+++|+|||..++-.+...+.. +.+++|+.-.
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~--------G~~vlYI~te 71 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAE 71 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhC--------CCceEEEEec
Confidence 36789999999999997655444444432 4457777654
No 493
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=50.88 E-value=27 Score=32.60 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=12.7
Q ss_pred EEEEcCCCchHHHHH
Q 010876 133 LIGIAETGSGKTLAY 147 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~ 147 (498)
+.+.|++|||||+.+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999853
No 494
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=50.47 E-value=31 Score=37.02 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=43.1
Q ss_pred cCCCeEEEEeCCcccHHHHHHHH----hhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 010876 336 MDGSRILIFMDTKKGCDQITRQL----RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 396 (498)
Q Consensus 336 ~~~~~vlIf~~s~~~~~~l~~~L----~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 396 (498)
..+..++|.++|+.-|...++.+ +..++.+..+.|+++..+|.... .++|+|+|+
T Consensus 118 L~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 118 LTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 35568999999998776666555 44689999999999987766654 479999994
No 495
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=50.18 E-value=7.5 Score=33.29 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHHH
Q 010876 132 DLIGIAETGSGKTLAYLL 149 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~~l 149 (498)
.+.+.+.+|||||+++-.
T Consensus 14 iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 377889999999986543
No 496
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=50.13 E-value=16 Score=38.75 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=40.2
Q ss_pred CcCCcccCCC-CHHHHHHHHHCCCC----CCcHHHHHHHHHhhc---CCcEEEEcCCCchHHHHHHHHHHHHHh
Q 010876 91 PVKSFRDVGF-PDYVMQEISKAGFF----EPTPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVN 156 (498)
Q Consensus 91 ~~~~f~~~~l-~~~~~~~l~~~~~~----~~~~~Q~~~i~~~l~---~~~~i~~a~TGsGKT~~~~l~~l~~~~ 156 (498)
.+.+|..+++ .+.+++.+...... +++.+=..|+..++. .+.+|+.++.|+|||.+.-. +++++.
T Consensus 124 avNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-im~yla 196 (783)
T 4db1_A 124 TVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKR-VIQYFA 196 (783)
T ss_dssp EECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred ecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHH-HHHhhh
Confidence 3455666654 56666666543322 334556666666653 44699999999999987544 445543
No 497
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=50.04 E-value=14 Score=35.04 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 010876 132 DLIGIAETGSGKTLAY 147 (498)
Q Consensus 132 ~~i~~a~TGsGKT~~~ 147 (498)
-+.+++++|+|||+..
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4788999999999753
No 498
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=49.74 E-value=16 Score=34.13 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010876 133 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 172 (498)
Q Consensus 133 ~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl 172 (498)
++..+..|.|||+++...+...... +.+||++
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~--------G~rVLlv 48 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS--------GKKTLVI 48 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--------TCCEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC--------CCcEEEE
No 499
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=49.70 E-value=21 Score=32.20 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=0.0
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 010876 127 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 190 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlvl~P~~~La~q~~~~~~~~~ 190 (498)
+..|..+++.+.+|+|||+.++--+...+.. +-+++|++-. +-..++...++.++
T Consensus 18 l~~gs~~li~g~p~~~~~~l~~qfl~~g~~~--------Ge~~~~~~~~-e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 18 KKHSLILIHEEDASSRGKDILFYILSRKLKS--------DNLVGMFSIS-YPLQLIIRILSRFG 72 (260)
T ss_dssp CTTCEEEEEECSGGGCHHHHHHHHHHHHHHT--------TCEEEEEECS-SCHHHHHHHHHHTT
T ss_pred CCCCcEEEEEeCCCccHHHHHHHHHHHHHHC--------CCcEEEEEEe-CCHHHHHHHHHHcC
No 500
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=49.29 E-value=8.8 Score=31.64 Aligned_cols=25 Identities=20% Similarity=-0.033 Sum_probs=0.0
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHH
Q 010876 127 ALKGRDLIGIAETGSGKTLAYLLPA 151 (498)
Q Consensus 127 ~l~~~~~i~~a~TGsGKT~~~~l~~ 151 (498)
+..|.-+.+.+|.|+|||+..-..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Done!