Query 010877
Match_columns 498
No_of_seqs 202 out of 391
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 5.6E-65 1.2E-69 505.0 15.9 198 139-360 1-258 (258)
2 PF00651 BTB: BTB/POZ domain; 98.0 9E-06 2E-10 69.1 5.7 76 2-85 32-109 (111)
3 smart00225 BTB Broad-Complex, 97.9 2.1E-05 4.6E-10 62.7 5.2 65 2-68 20-84 (90)
4 PHA03098 kelch-like protein; P 97.5 0.00034 7.4E-09 76.1 9.9 139 2-179 32-179 (534)
5 KOG4441 Proteins containing BT 96.5 0.046 1E-06 61.1 14.6 196 2-267 57-258 (571)
6 PHA02713 hypothetical protein; 96.5 0.019 4.1E-07 63.8 11.5 76 2-87 47-123 (557)
7 PHA02790 Kelch-like protein; P 96.0 0.011 2.4E-07 64.3 6.1 94 2-112 42-136 (480)
8 PF11822 DUF3342: Domain of un 88.4 0.28 6E-06 51.2 2.2 76 3-85 26-102 (317)
9 smart00512 Skp1 Found in Skp1 81.4 2.3 5E-05 36.7 4.4 62 3-66 23-104 (104)
10 KOG2075 Topoisomerase TOP1-int 79.7 13 0.00029 41.0 10.2 148 7-180 145-294 (521)
11 PF08581 Tup_N: Tup N-terminal 72.4 6.5 0.00014 33.2 4.4 31 414-444 34-64 (79)
12 PF01166 TSC22: TSC-22/dip/bun 63.1 14 0.0003 29.7 4.2 33 409-441 11-43 (59)
13 PF04508 Pox_A_type_inc: Viral 60.6 12 0.00025 24.7 2.8 18 420-437 2-19 (23)
14 KOG0783 Uncharacterized conser 46.6 24 0.00052 41.7 4.4 86 2-115 579-676 (1267)
15 PF07407 Seadorna_VP6: Seadorn 42.6 33 0.00071 36.4 4.3 31 406-436 33-63 (420)
16 TIGR01834 PHA_synth_III_E poly 42.4 36 0.00078 36.0 4.6 30 418-447 288-317 (320)
17 KOG4603 TBP-1 interacting prot 41.6 28 0.00062 33.7 3.4 55 413-467 108-176 (201)
18 PF14077 WD40_alt: Alternative 37.7 20 0.00043 27.5 1.4 20 421-440 13-32 (48)
19 TIGR02894 DNA_bind_RsfA transc 36.0 74 0.0016 30.5 5.2 30 411-440 103-132 (161)
20 PF09789 DUF2353: Uncharacteri 34.8 54 0.0012 34.6 4.5 37 409-445 76-112 (319)
21 PF03931 Skp1_POZ: Skp1 family 34.8 30 0.00065 27.2 2.1 37 3-43 22-58 (62)
22 PF00170 bZIP_1: bZIP transcri 34.3 1.1E+02 0.0023 24.2 5.2 18 421-438 42-59 (64)
23 PHA01750 hypothetical protein 34.3 81 0.0017 26.1 4.4 31 412-442 42-72 (75)
24 PF15294 Leu_zip: Leucine zipp 33.7 71 0.0015 33.2 5.1 38 408-445 128-165 (278)
25 PF10473 CENP-F_leu_zip: Leuci 33.5 77 0.0017 29.7 4.8 35 409-443 77-111 (140)
26 COG2433 Uncharacterized conser 33.1 66 0.0014 36.8 5.0 35 409-443 433-467 (652)
27 PF07716 bZIP_2: Basic region 32.9 97 0.0021 23.8 4.6 30 416-445 22-51 (54)
28 PF07989 Microtub_assoc: Micro 30.7 86 0.0019 26.2 4.2 37 407-443 38-74 (75)
29 PF04977 DivIC: Septum formati 30.4 1.3E+02 0.0028 24.0 5.3 35 411-445 16-50 (80)
30 KOG4603 TBP-1 interacting prot 29.5 1.1E+02 0.0023 29.9 5.1 38 409-446 76-113 (201)
31 PRK10884 SH3 domain-containing 29.4 1.2E+02 0.0027 29.9 5.8 33 410-442 137-169 (206)
32 smart00338 BRLZ basic region l 29.2 1.2E+02 0.0025 24.0 4.7 29 413-441 34-62 (65)
33 PF07106 TBPIP: Tat binding pr 28.3 1.3E+02 0.0028 28.3 5.5 37 411-447 71-107 (169)
34 PF05529 Bap31: B-cell recepto 26.4 1.1E+02 0.0024 29.3 4.8 35 412-446 154-188 (192)
35 KOG4682 Uncharacterized conser 26.2 1.1E+02 0.0023 33.7 4.9 68 1-68 88-157 (488)
36 PF11336 DUF3138: Protein of u 25.6 79 0.0017 34.8 3.9 27 409-435 22-48 (514)
37 PF11365 DUF3166: Protein of u 25.4 1.9E+02 0.0041 25.5 5.6 38 410-447 6-43 (96)
38 KOG4571 Activating transcripti 25.3 94 0.002 32.5 4.3 40 407-446 250-289 (294)
39 PF11853 DUF3373: Protein of u 25.2 51 0.0011 36.7 2.5 34 412-446 25-58 (489)
40 PF02183 HALZ: Homeobox associ 24.8 2.1E+02 0.0046 21.6 5.0 37 411-447 4-40 (45)
41 PF13815 Dzip-like_N: Iguana/D 24.1 2.1E+02 0.0045 25.5 5.8 53 371-441 64-116 (118)
42 TIGR02209 ftsL_broad cell divi 23.5 1.9E+02 0.0042 23.6 5.2 35 413-447 25-59 (85)
43 PF01402 RHH_1: Ribbon-helix-h 23.4 1.3E+02 0.0028 21.0 3.5 34 148-181 5-39 (39)
44 PLN03205 ATR interacting prote 23.4 87 0.0019 34.5 3.7 29 412-440 134-162 (652)
45 PRK13922 rod shape-determining 23.2 1.3E+02 0.0027 30.4 4.8 34 408-441 72-108 (276)
46 PF12017 Tnp_P_element: Transp 22.8 1.4E+02 0.003 30.2 4.9 23 411-433 17-39 (236)
47 PF10186 Atg14: UV radiation r 22.3 1.2E+02 0.0025 30.3 4.3 33 359-391 13-45 (302)
48 PF06005 DUF904: Protein of un 21.7 2.5E+02 0.0054 23.3 5.4 38 410-447 16-53 (72)
49 KOG3473 RNA polymerase II tran 21.5 1.9E+02 0.004 25.9 4.7 60 4-65 39-111 (112)
50 PF08172 CASP_C: CASP C termin 21.5 1.1E+02 0.0023 31.2 3.8 24 422-445 89-112 (248)
51 PF08700 Vps51: Vps51/Vps67; 21.4 1.5E+02 0.0033 24.3 4.1 31 409-439 55-85 (87)
52 PF10805 DUF2730: Protein of u 21.1 1.7E+02 0.0036 25.8 4.5 37 409-445 32-70 (106)
53 cd00056 ENDO3c endonuclease II 20.8 1.5E+02 0.0032 27.0 4.3 45 22-68 82-127 (158)
54 PF10224 DUF2205: Predicted co 20.6 2.1E+02 0.0045 24.4 4.7 34 408-441 19-52 (80)
55 KOG3335 Predicted coiled-coil 20.5 1.8E+02 0.0039 28.4 4.9 29 417-445 104-132 (181)
56 PF04420 CHD5: CHD5-like prote 20.4 2.1E+02 0.0045 27.0 5.3 37 411-447 39-87 (161)
57 PF13094 CENP-Q: CENP-Q, a CEN 20.2 2E+02 0.0043 26.7 5.1 39 409-447 45-83 (160)
58 KOG4196 bZIP transcription fac 20.1 2.3E+02 0.005 26.4 5.2 36 411-446 80-115 (135)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=5.6e-65 Score=505.02 Aligned_cols=198 Identities=43% Similarity=0.855 Sum_probs=174.2
Q ss_pred CCcchhcccccChhHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccc
Q 010877 139 QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVG 218 (498)
Q Consensus 139 ~dWW~eDl~~L~id~f~rvi~am~~kg~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (498)
+|||||||+.|++|+|+|||.+|+++||+|++||++|+|||+||||++.....+... ...+.+..
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~---------------~~~~~~~~ 65 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSS---------------SAESSTSS 65 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccc---------------cccccchh
Confidence 489999999999999999999999999999999999999999999998543111100 01233456
Q ss_pred hhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhcccccccccccCCCCccccccCCCC
Q 010877 219 QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPE 298 (498)
Q Consensus 219 ~~~qr~llEtiV~lLP~ek~~vsc~FL~~LLR~A~~l~as~~cr~~LEkRIg~qLdqAtldDLLIPs~~~~~~~~~~~~~ 298 (498)
..+||.+||+||+|||+|+++|||+|||+|||+|+++++|++||.+||+|||+|||||||+|||||+.+...+
T Consensus 66 ~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~------- 138 (258)
T PF03000_consen 66 ENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGED------- 138 (258)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCccc-------
Confidence 8899999999999999999999999999999999999999999999999999999999999999999322322
Q ss_pred CCccccHHHHHHHHHHHHhhhhh---------------hhhhhhhccc--------------------------------
Q 010877 299 HNTMHNIDVVQRIMDYFLMHEQQ---------------QQQKQQNMGK-------------------------------- 331 (498)
Q Consensus 299 ~~tlyDVdlV~Ril~~Fl~~~~~---------------~~~~~~kVak-------------------------------- 331 (498)
|+||||+|+|||++||.+++. ..+++.+|||
T Consensus 139 --t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR 216 (258)
T PF03000_consen 139 --TLYDVDLVQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSAR 216 (258)
T ss_pred --chhhHHHHHHHHHHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhh
Confidence 999999999999999998431 1247788888
Q ss_pred -------------cccCCCCCHHHHhhhhcccccccCCHHHh
Q 010877 332 -------------TNSHPSLSEHDRRRLCKLMNCEKLSLDAC 360 (498)
Q Consensus 332 -------------LKaHP~Lse~ER~~lCr~mdcqKLS~EAc 360 (498)
||+||+||++||++||++|||||||+|||
T Consensus 217 ~~hD~LYrAID~YLk~Hp~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 217 PSHDGLYRAIDIYLKAHPGLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred hccchHHHHHHHHHHHcccCCHHHHHHHHhhCCcccCCcccC
Confidence 99999999999999999999999999999
No 2
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.02 E-value=9e-06 Score=69.15 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=66.5
Q ss_pred ccccHHHHHhcCCC-CCCCccceeecCCCCChHHHHHHHHhhcCCccccC-CcchHHHHhhHhhhcCcccccCCchHHHH
Q 010877 2 SKCGYIARLELQPS-ISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFN-PNNIAPLRCASEFLDMSEEYEDGNLISKT 79 (498)
Q Consensus 2 Sksg~l~rli~~~~-~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt-~~NVa~LrCAAeyLeMTE~~~~gNLi~kt 79 (498)
++|.||++++.... ......+|.+++++ +++|+.+.+|||+..+.++ ..|+..+..+|.+++|.+ |...+
T Consensus 32 ~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~------L~~~~ 103 (111)
T PF00651_consen 32 ARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPE------LKKAC 103 (111)
T ss_dssp HHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHH------HHHHH
T ss_pred ccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHH------HHHHH
Confidence 57999999999873 22133478888888 8899999999999999998 999999999999999996 99999
Q ss_pred HHHhhh
Q 010877 80 EAFLTL 85 (498)
Q Consensus 80 E~fL~~ 85 (498)
+.||.+
T Consensus 104 ~~~l~~ 109 (111)
T PF00651_consen 104 EKFLQE 109 (111)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999986
No 3
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.88 E-value=2.1e-05 Score=62.74 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=54.4
Q ss_pred ccccHHHHHhcCCCCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCcc
Q 010877 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE 68 (498)
Q Consensus 2 Sksg~l~rli~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMTE 68 (498)
++|.++++++...........+.+.| -.+++|+.+-+|||+..+.+++.|+..+..+|+|++|.+
T Consensus 20 ~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~ 84 (90)
T smart00225 20 ACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPG 84 (90)
T ss_pred hcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHH
Confidence 46899999998644322345677766 569999999999999999999999999999999999976
No 4
>PHA03098 kelch-like protein; Provisional
Probab=97.55 E-value=0.00034 Score=76.07 Aligned_cols=139 Identities=14% Similarity=0.272 Sum_probs=100.8
Q ss_pred ccccHHHHHhcCCCCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCcccccCCchHHHHHH
Q 010877 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (498)
Q Consensus 2 Sksg~l~rli~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMTE~~~~gNLi~ktE~ 81 (498)
++|.||+.++...-. ..+|.|++ -+++|+.+.+|-|...++|+..||..|--||.+|+|.+ |....+.
T Consensus 32 a~S~yF~~mf~~~~~---~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~------l~~~C~~ 99 (534)
T PHA03098 32 SSSEYFKKMFKNNFK---ENEINLNI---DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF------LINLCIN 99 (534)
T ss_pred hhhHHHHHHHhCCCC---CceEEecC---CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence 579999999874322 34687776 78999999999999999999999999999999999997 9999999
Q ss_pred HhhhhhccChHHHHHHHhhhhcccchhhhhh---hHHHHHHHHHHhh---ccCCccccccccCCCcchhcccccChhHHH
Q 010877 82 FLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKA---SRENSTTEDIANRQGWWFDDVATLGIDHFM 155 (498)
Q Consensus 82 fL~~vvl~sW~dsi~vLksCe~Llp~AE~l~---iv~RCidsia~ka---~~~~~~~~~~~~~~dWW~eDl~~L~id~f~ 155 (498)
||...+ + ...|-.++..|+..+ +.+.|.+-|+... +.+ +|...|+.+...
T Consensus 100 ~l~~~l--~-------~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~---------------~~f~~l~~~~l~ 155 (534)
T PHA03098 100 YIIKII--D-------DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYND---------------PDFIYLSKNELI 155 (534)
T ss_pred HHHHhC--C-------HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcC---------------chhhcCCHHHHH
Confidence 998754 2 334555556666554 6667777766543 111 456677777666
Q ss_pred HHHHHHHhcCC---CchhHHHHHHHHH
Q 010877 156 RIITTIKVKGT---KPEIIGKCIMHYA 179 (498)
Q Consensus 156 rvi~am~~kg~---~~~~I~~~l~~Ya 179 (498)
.++.. ..+ +++.+-.+++.++
T Consensus 156 ~ll~~---~~L~v~~E~~v~~av~~W~ 179 (534)
T PHA03098 156 KILSD---DKLNVSSEDVVLEIIIKWL 179 (534)
T ss_pred HHhcC---CCcCcCCHHHHHHHHHHHH
Confidence 65443 332 4556667766555
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.51 E-value=0.046 Score=61.10 Aligned_cols=196 Identities=15% Similarity=0.266 Sum_probs=125.9
Q ss_pred ccccHHHHHhcCCCCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCcccccCCchHHHHHH
Q 010877 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (498)
Q Consensus 2 Sksg~l~rli~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMTE~~~~gNLi~ktE~ 81 (498)
+-|.||+-++...-.+....+|.|.+ .-++++++...|+|..+++|+-.||-.|-=||.+|+|++ +..-.-.
T Consensus 57 a~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~ 128 (571)
T KOG4441|consen 57 ACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDACCE 128 (571)
T ss_pred hccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHHHHH
Confidence 35788888887422222456899999 678999999999999999999999999999999999997 8888889
Q ss_pred HhhhhhccChHHHH-----HHHhhhhcccchhhhhhhHHHHHHHHHHhhccCCccccccccCCCcchhcccccChhHHHH
Q 010877 82 FLTLVILSSWKETI-----TVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMR 156 (498)
Q Consensus 82 fL~~vvl~sW~dsi-----~vLksCe~Llp~AE~l~iv~RCidsia~ka~~~~~~~~~~~~~~dWW~eDl~~L~id~f~r 156 (498)
||..-+.. ..++ .-+.+|..|...|.+ .|.+..++- |=-||...|+.+.+..
T Consensus 129 fL~~~l~~--~Nclgi~~~a~~~~~~~L~~~a~~-~i~~~F~~v--------------------~~~eefl~L~~~~l~~ 185 (571)
T KOG4441|consen 129 FLESQLDP--SNCLGIRRFAELHSCTELLEVADE-YILQHFAEV--------------------SKTEEFLLLSLEELIG 185 (571)
T ss_pred HHHhcCCH--HHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHH--------------------hccHHhhCCCHHHHHh
Confidence 99875432 2222 223456655554432 122221111 1225666688777776
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccchhhHHHHHHHHHHhcCCC
Q 010877 157 IITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQ 236 (498)
Q Consensus 157 vi~am~~kg~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEtiV~lLP~e 236 (498)
+|..-.-.--+++.+..++ -+|+.-- . ..++.. +..+|..-
T Consensus 186 ll~~d~l~v~~E~~vf~a~----~~Wv~~d----------------------------~---~~R~~~----~~~ll~~v 226 (571)
T KOG4441|consen 186 LLSSDDLNVDSEEEVFEAA----MRWVKHD----------------------------F---EEREEH----LPALLEAV 226 (571)
T ss_pred hccccCCCcCCHHHHHHHH----HHHHhcC----------------------------H---hhHHHH----HHHHHHhc
Confidence 6665443333455544444 4554310 0 001111 11122111
Q ss_pred C-CcccHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010877 237 D-EGVSCKFFLQMLKMAMVYNASPALISELEK 267 (498)
Q Consensus 237 k-~~vsc~FL~~LLR~A~~l~as~~cr~~LEk 267 (498)
+ ..+|-.||.......-.+..+++|+.-|..
T Consensus 227 r~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~e 258 (571)
T KOG4441|consen 227 RLPLLPPQFLVEIVESEPLIKRDSACRDLLDE 258 (571)
T ss_pred CccCCCHHHHHHHHhhhhhhccCHHHHHHHHH
Confidence 1 347788999999999999999999998754
No 6
>PHA02713 hypothetical protein; Provisional
Probab=96.50 E-value=0.019 Score=63.76 Aligned_cols=76 Identities=17% Similarity=0.352 Sum_probs=63.5
Q ss_pred ccccHHHHHhcCC-CCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCcccccCCchHHHHH
Q 010877 2 SKCGYIARLELQP-SISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (498)
Q Consensus 2 Sksg~l~rli~~~-~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMTE~~~~gNLi~ktE 80 (498)
+.|.||+.++... +++....+|+|+++ .+++|+.+.+|.|... ||+.||-.|--||.||+|++ |....+
T Consensus 47 a~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~------l~~~C~ 116 (557)
T PHA02713 47 AGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDD------LVTDCE 116 (557)
T ss_pred hcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHH------HHHHHH
Confidence 5799999998743 21112357889887 5899999999999986 79999999999999999997 999999
Q ss_pred HHhhhhh
Q 010877 81 AFLTLVI 87 (498)
Q Consensus 81 ~fL~~vv 87 (498)
.||.+.+
T Consensus 117 ~~l~~~l 123 (557)
T PHA02713 117 SYIKDYT 123 (557)
T ss_pred HHHHhhC
Confidence 9998755
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=95.98 E-value=0.011 Score=64.28 Aligned_cols=94 Identities=12% Similarity=0.051 Sum_probs=71.2
Q ss_pred ccccHHHHHhcC-CCCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCcccccCCchHHHHH
Q 010877 2 SKCGYIARLELQ-PSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (498)
Q Consensus 2 Sksg~l~rli~~-~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMTE~~~~gNLi~ktE 80 (498)
+-|.||+-++.. -+++ ..++.+..+--.+++|+.+..|-|..+++||..||-.|-.||.||+|++ ++....
T Consensus 42 a~S~YFraMF~~~~~Es--~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~------v~~~C~ 113 (480)
T PHA02790 42 KLSPYFRTHLRQKYTKN--KDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEF------IIYTCI 113 (480)
T ss_pred hcCHHHHHHhcCCcccc--ccceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHH------HHHHHH
Confidence 458899999864 2222 2245553223358999999999999999999999999999999999997 999999
Q ss_pred HHhhhhhccChHHHHHHHhhhhcccchhhhhh
Q 010877 81 AFLTLVILSSWKETITVLKSCKNLSPWAENLQ 112 (498)
Q Consensus 81 ~fL~~vvl~sW~dsi~vLksCe~Llp~AE~l~ 112 (498)
.||.+.+-. ..|-.+...|+..+
T Consensus 114 ~fL~~~l~~---------~NCl~i~~~A~~y~ 136 (480)
T PHA02790 114 NFILRDFRK---------EYCVECYMMGIEYG 136 (480)
T ss_pred HHHHhhCCc---------chHHHHHHHHHHhC
Confidence 999986532 24545555555554
No 8
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=88.38 E-value=0.28 Score=51.20 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=55.1
Q ss_pred cccHHHHHhcC-CCCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCcccccCCchHHHHHH
Q 010877 3 KCGYIARLELQ-PSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (498)
Q Consensus 3 ksg~l~rli~~-~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMTE~~~~gNLi~ktE~ 81 (498)
.=+||+-++.. .+++....+|.| .+-=.-.+||.-.++++|-...|||.||+++-=-++||+|++ |++.+=.
T Consensus 26 ~M~YF~~~l~~~~~~~~~~~~idi-sVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~------Lve~cl~ 98 (317)
T PF11822_consen 26 EMRYFAEYLSRYINDSQRWEEIDI-SVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES------LVEECLQ 98 (317)
T ss_pred hhHHHHHHHhhcccccCcCCCcce-EEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH------HHHHHHH
Confidence 34678888743 111111223333 112245799999999999999999999999999999999997 8888888
Q ss_pred Hhhh
Q 010877 82 FLTL 85 (498)
Q Consensus 82 fL~~ 85 (498)
|...
T Consensus 99 y~~~ 102 (317)
T PF11822_consen 99 YCHD 102 (317)
T ss_pred HHHH
Confidence 8754
No 9
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=81.40 E-value=2.3 Score=36.72 Aligned_cols=62 Identities=15% Similarity=0.262 Sum_probs=42.2
Q ss_pred cccHHHHHhcCCCCCC-CccceeecCCCCChHHHHHHHHhhcCCcc-------------------ccCCcchHHHHhhHh
Q 010877 3 KCGYIARLELQPSISN-LGYDLKLENFPGGSETFEIILKFCYGLPI-------------------AFNPNNIAPLRCASE 62 (498)
Q Consensus 3 ksg~l~rli~~~~~~~-~~~~i~L~dfPGGaeaFEl~akFCYG~~i-------------------~lt~~NVa~LrCAAe 62 (498)
.|+.|+.++.+....+ +...|.|++++ +.+++++..||+--+- .+...++--|-.||.
T Consensus 23 ~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAn 100 (104)
T smart00512 23 QSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAAN 100 (104)
T ss_pred HHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHH
Confidence 5888999887654321 22467777777 6899999999984210 044556777778888
Q ss_pred hhcC
Q 010877 63 FLDM 66 (498)
Q Consensus 63 yLeM 66 (498)
||++
T Consensus 101 yL~I 104 (104)
T smart00512 101 YLDI 104 (104)
T ss_pred hhCC
Confidence 8864
No 10
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=79.72 E-value=13 Score=41.02 Aligned_cols=148 Identities=12% Similarity=0.204 Sum_probs=98.0
Q ss_pred HHHHhcCCCCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCcccccCCchHHHHHHHhhhh
Q 010877 7 IARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLV 86 (498)
Q Consensus 7 l~rli~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMTE~~~~gNLi~ktE~fL~~v 86 (498)
+-++....-......+|.++|+ -|.+|+---||=|+-.+.+.|.||-.+.=||. .|-.+-|...+-.||..-
T Consensus 145 FdaMf~g~~a~~~s~ei~lpdv--epaaFl~~L~flYsdev~~~~dtvi~tl~~Ak------KY~VpaLer~CVkflr~~ 216 (521)
T KOG2075|consen 145 FDAMFYGGLAEDASLEIRLPDV--EPAAFLAFLRFLYSDEVKLAADTVITTLYAAK------KYLVPALERQCVKFLRKN 216 (521)
T ss_pred HHHHhccCcccccCceeecCCc--ChhHhHHHHHHHhcchhhhhHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHh
Confidence 3444443322212568888887 58999999999999999999999988776664 233455888888898885
Q ss_pred hccChHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHhh--ccCCccccccccCCCcchhcccccChhHHHHHHHHHHhc
Q 010877 87 ILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKA--SRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVK 164 (498)
Q Consensus 87 vl~sW~dsi~vLksCe~Llp~AE~l~iv~RCidsia~ka--~~~~~~~~~~~~~~dWW~eDl~~L~id~f~rvi~am~~k 164 (498)
.+. .....-|-+|-.| .++=.+.++|++.|.-.. |.+++ ||-|.-.+ .|+|.-|++. ...
T Consensus 217 l~~--~naf~~L~q~A~l---f~ep~Li~~c~e~id~~~~~al~~E-----------Gf~did~~-~dt~~evl~r-~~l 278 (521)
T KOG2075|consen 217 LMA--DNAFLELFQRAKL---FDEPSLISICLEVIDKSFEDALTPE-----------GFCDIDST-RDTYEEVLRR-DTL 278 (521)
T ss_pred cCC--hHHHHHHHHHHHh---hcCHHHHHHHHHHhhhHHHhhhCcc-----------ceeehhhH-HHHHHHHHhh-ccc
Confidence 542 4555556666444 355569999999986433 44433 77777666 7887776653 112
Q ss_pred CCCchhHHHHHHHHHH
Q 010877 165 GTKPEIIGKCIMHYAK 180 (498)
Q Consensus 165 g~~~~~I~~~l~~Ya~ 180 (498)
.++.-.+-+++..|++
T Consensus 279 ~~~e~~lfeA~lkw~~ 294 (521)
T KOG2075|consen 279 EAREFRLFEAALKWAE 294 (521)
T ss_pred chhHHHHHHHHHhhcc
Confidence 3454455666655553
No 11
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=72.42 E-value=6.5 Score=33.24 Aligned_cols=31 Identities=19% Similarity=0.533 Sum_probs=26.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010877 414 IKNLREELENVKTRMAELQKDYSELQREYEK 444 (498)
Q Consensus 414 ~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k 444 (498)
+...=.||+.||..|.+||..+..||++++.
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445568999999999999999999998864
No 12
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=63.10 E-value=14 Score=29.69 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=27.7
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010877 409 STSIEIKNLREELENVKTRMAELQKDYSELQRE 441 (498)
Q Consensus 409 ~~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~ 441 (498)
+.+.|.+.||..+..+..|+.+||.|+.-+|+-
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346688999999999999999999999888764
No 13
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=60.64 E-value=12 Score=24.74 Aligned_cols=18 Identities=28% Similarity=0.717 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010877 420 ELENVKTRMAELQKDYSE 437 (498)
Q Consensus 420 el~~mr~rv~eLE~~c~~ 437 (498)
||++.|.|+.+||++...
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 789999999999988653
No 14
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=46.59 E-value=24 Score=41.67 Aligned_cols=86 Identities=22% Similarity=0.420 Sum_probs=57.0
Q ss_pred ccccHHHHHhcCCCCC------------CCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCccc
Q 010877 2 SKCGYIARLELQPSIS------------NLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEE 69 (498)
Q Consensus 2 Sksg~l~rli~~~~~~------------~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMTE~ 69 (498)
+||..||+|+..-.++ ...++|.++|+|| ..||+...|-|-.+ -+.|+--=-.-|.+- +
T Consensus 579 ~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p--~mfe~lL~~iYtdt-~~~P~heDdidci~f------s 649 (1267)
T KOG0783|consen 579 ARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP--LMFEILLHYIYTDT-LLSPWHEDDIDCIRF------S 649 (1267)
T ss_pred eccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH--HHHHHHHHHHhccc-ccCCccccchhhhhc------c
Confidence 6889999999754322 1356777899985 78999999999865 456622212222211 1
Q ss_pred ccCCchHHHHHHHhhhhhccChHHHHHHHhhhhcccchhhhhhhHH
Q 010877 70 YEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVR 115 (498)
Q Consensus 70 ~~~gNLi~ktE~fL~~vvl~sW~dsi~vLksCe~Llp~AE~l~iv~ 115 (498)
..+.|+..|| ++|+-|.|.+|..++++
T Consensus 650 ~~k~N~~qrt-------------------rtCeMl~~~lekf~l~e 676 (1267)
T KOG0783|consen 650 PLKENLSQRT-------------------RTCEMLANLLEKFHLAE 676 (1267)
T ss_pred ccccChhhcc-------------------cHHHHHHHHHhhhhHHh
Confidence 2356776633 67999999999888764
No 15
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=42.64 E-value=33 Score=36.38 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCCcchHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010877 406 TQPSTSIEIKNLREELENVKTRMAELQKDYS 436 (498)
Q Consensus 406 ~~~~~~rE~~~Lk~el~~mr~rv~eLE~~c~ 436 (498)
+-..+++||..||.|.+.+|.+|..||.+..
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677888888888888888888776544
No 16
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=42.37 E-value=36 Score=35.96 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010877 418 REELENVKTRMAELQKDYSELQREYEKLSN 447 (498)
Q Consensus 418 k~el~~mr~rv~eLE~~c~~m~~~~~k~~~ 447 (498)
|.||+.+..|+.|||++...|+++++.+.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 557999999999999999999999988754
No 17
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=41.56 E-value=28 Score=33.72 Aligned_cols=55 Identities=24% Similarity=0.451 Sum_probs=32.3
Q ss_pred HHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcccC------------CCcCcccchhhhhhcccC
Q 010877 413 EIKNLREE--LENVKTRMAELQKDYSELQREYEKLSNKH------------KIVSSWSLGWRKIKNSFH 467 (498)
Q Consensus 413 E~~~Lk~e--l~~mr~rv~eLE~~c~~m~~~~~k~~~~~------------k~~~~~~~~wkkl~~~~~ 467 (498)
|+++|... ++.|+..+.+|-++|..|...+.++.... +..-..-+.|||.+|.|.
T Consensus 108 Eik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ 176 (201)
T KOG4603|consen 108 EIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFR 176 (201)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555444 45667777777777777766666554211 112334578898888643
No 18
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=37.72 E-value=20 Score=27.49 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010877 421 LENVKTRMAELQKDYSELQR 440 (498)
Q Consensus 421 l~~mr~rv~eLE~~c~~m~~ 440 (498)
-+.+|.||+|||.|...+++
T Consensus 13 ~e~l~vrv~eLEeEV~~LrK 32 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLRK 32 (48)
T ss_pred cchheeeHHHHHHHHHHHHH
Confidence 46789999999999988763
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.99 E-value=74 Score=30.49 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=16.8
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010877 411 SIEIKNLREELENVKTRMAELQKDYSELQR 440 (498)
Q Consensus 411 ~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~ 440 (498)
..||+.|+.++..++.++.+||++...+++
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665555555555533
No 20
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=34.80 E-value=54 Score=34.65 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=32.9
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010877 409 STSIEIKNLREELENVKTRMAELQKDYSELQREYEKL 445 (498)
Q Consensus 409 ~~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~ 445 (498)
.++.+|..|+.|++.+|.++.|++.+|..++..+.+.
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 4467899999999999999999999999999887664
No 21
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=34.76 E-value=30 Score=27.21 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=28.2
Q ss_pred cccHHHHHhcCCCCCCCccceeecCCCCChHHHHHHHHhhc
Q 010877 3 KCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCY 43 (498)
Q Consensus 3 ksg~l~rli~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCY 43 (498)
.|+.|+.++....+. +. .|.|+++. +++++++..+|+
T Consensus 22 ~S~~i~~ml~~~~~~-~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 22 QSKTIKNMLEDLGDE-DE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp TSHHHHHHHHCTCCC-GT-EEEETTS---HHHHHHHHHHHH
T ss_pred HhHHHHHHHhhhccc-cc-ccccCccC--HHHHHHHHHHHH
Confidence 588999999875544 22 68888875 479999999997
No 22
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=34.35 E-value=1.1e+02 Score=24.21 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010877 421 LENVKTRMAELQKDYSEL 438 (498)
Q Consensus 421 l~~mr~rv~eLE~~c~~m 438 (498)
.+.|+..+..|+.++..|
T Consensus 42 n~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 42 NEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 23
>PHA01750 hypothetical protein
Probab=34.33 E-value=81 Score=26.09 Aligned_cols=31 Identities=32% Similarity=0.608 Sum_probs=16.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010877 412 IEIKNLREELENVKTRMAELQKDYSELQREY 442 (498)
Q Consensus 412 rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~ 442 (498)
.|...|+.|++..+.|.-+||++...+++.+
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3445555555555555555555555554443
No 24
>PF15294 Leu_zip: Leucine zipper
Probab=33.75 E-value=71 Score=33.16 Aligned_cols=38 Identities=34% Similarity=0.393 Sum_probs=32.2
Q ss_pred CcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010877 408 PSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKL 445 (498)
Q Consensus 408 ~~~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~ 445 (498)
..+..|+..|+.|.+++|.|+..+|++|..+-.+-.++
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl 165 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL 165 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999886555544
No 25
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=33.45 E-value=77 Score=29.65 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=24.0
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010877 409 STSIEIKNLREELENVKTRMAELQKDYSELQREYE 443 (498)
Q Consensus 409 ~~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~ 443 (498)
+++.|+..|-.+++.|+.+|.|||.-++.....++
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44567777777777777777777777766655443
No 26
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.09 E-value=66 Score=36.78 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=27.1
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010877 409 STSIEIKNLREELENVKTRMAELQKDYSELQREYE 443 (498)
Q Consensus 409 ~~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~ 443 (498)
.+..||+.|+.+++.|+..+.+|+.+|..++.+++
T Consensus 433 ~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 433 RLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568888888888888888888888888765553
No 27
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=32.92 E-value=97 Score=23.75 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010877 416 NLREELENVKTRMAELQKDYSELQREYEKL 445 (498)
Q Consensus 416 ~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~ 445 (498)
.-|..++.|..++.+|+.+...|++++..+
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888888887765
No 28
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=30.65 E-value=86 Score=26.16 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=28.1
Q ss_pred CCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010877 407 QPSTSIEIKNLREELENVKTRMAELQKDYSELQREYE 443 (498)
Q Consensus 407 ~~~~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~ 443 (498)
......||-.||.+++.|+..+.++++......+.++
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456778888999988888888888887776666554
No 29
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.44 E-value=1.3e+02 Score=24.01 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=25.3
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010877 411 SIEIKNLREELENVKTRMAELQKDYSELQREYEKL 445 (498)
Q Consensus 411 ~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~ 445 (498)
..+...++.++..++.++.+|+.+-..++++++++
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777777777777777777776
No 30
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.52 E-value=1.1e+02 Score=29.91 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=32.5
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010877 409 STSIEIKNLREELENVKTRMAELQKDYSELQREYEKLS 446 (498)
Q Consensus 409 ~~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~~ 446 (498)
....|...|..++.++..++.+|++.|+.|..+|.-+.
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~ 113 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELS 113 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999999999999987776654
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.37 E-value=1.2e+02 Score=29.89 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=20.6
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010877 410 TSIEIKNLREELENVKTRMAELQKDYSELQREY 442 (498)
Q Consensus 410 ~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~ 442 (498)
+..||+.|+.+++..+.++.+|+.+-..+|..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665555443
No 32
>smart00338 BRLZ basic region leucin zipper.
Probab=29.22 E-value=1.2e+02 Score=23.98 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=13.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010877 413 EIKNLREELENVKTRMAELQKDYSELQRE 441 (498)
Q Consensus 413 E~~~Lk~el~~mr~rv~eLE~~c~~m~~~ 441 (498)
+.+.|..+.+.|+.++..|+.++..++.+
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 33
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.29 E-value=1.3e+02 Score=28.26 Aligned_cols=37 Identities=30% Similarity=0.513 Sum_probs=22.0
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010877 411 SIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 447 (498)
Q Consensus 411 ~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~~~ 447 (498)
..|...|..++..++.++.+|+.++..++.++..+.+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455556666666666666666666666665555543
No 34
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.40 E-value=1.1e+02 Score=29.26 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=23.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010877 412 IEIKNLREELENVKTRMAELQKDYSELQREYEKLS 446 (498)
Q Consensus 412 rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~~ 446 (498)
.++..++.|++.++..+.+-|++...||.|.+.+.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777777777777777776654
No 35
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=26.15 E-value=1.1e+02 Score=33.73 Aligned_cols=68 Identities=7% Similarity=0.070 Sum_probs=56.4
Q ss_pred CccccHHHHHhcCCCCCC--CccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCcc
Q 010877 1 MSKCGYIARLELQPSISN--LGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE 68 (498)
Q Consensus 1 ~Sksg~l~rli~~~~~~~--~~~~i~L~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMTE 68 (498)
++-|+||.-+...+-.+. +...++|.|=--...+|..|-+==|-..|+|.++-|+..-.||.||...-
T Consensus 88 L~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldg 157 (488)
T KOG4682|consen 88 LFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDG 157 (488)
T ss_pred eeccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhh
Confidence 356889999987654321 33467778888899999999999999999999999999999999998763
No 36
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=25.60 E-value=79 Score=34.84 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.0
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHH
Q 010877 409 STSIEIKNLREELENVKTRMAELQKDY 435 (498)
Q Consensus 409 ~~~rE~~~Lk~el~~mr~rv~eLE~~c 435 (498)
+...+|+.|+.+|..+|.+|.|||++.
T Consensus 22 a~a~~i~~L~~ql~aLq~~v~eL~~~l 48 (514)
T PF11336_consen 22 ATADQIKALQAQLQALQDQVNELRAKL 48 (514)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999998763
No 37
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=25.37 E-value=1.9e+02 Score=25.47 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=31.8
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010877 410 TSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 447 (498)
Q Consensus 410 ~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~~~ 447 (498)
+++..+=.+.|-+-||..++|||.+-..|..|+.|...
T Consensus 6 LR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 6 LRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666778999999999999999999999998754
No 38
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=25.32 E-value=94 Score=32.47 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010877 407 QPSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLS 446 (498)
Q Consensus 407 ~~~~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~~ 446 (498)
|.++..|.+.|-..=+.+|.++.+||+|..-||+-|.-.-
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456677777788899999999999999998775443
No 39
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.22 E-value=51 Score=36.73 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=22.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010877 412 IEIKNLREELENVKTRMAELQKDYSELQREYEKLS 446 (498)
Q Consensus 412 rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~~ 446 (498)
.|...+| +|+.++.++.|||++...|+.+++|..
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhcccccccchhh
Confidence 3455556 677777777777777777766666543
No 40
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.77 E-value=2.1e+02 Score=21.62 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=30.2
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010877 411 SIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 447 (498)
Q Consensus 411 ~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~~~ 447 (498)
.++-+.||..-+.++.....|.+|-..++.++..+..
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888888888888887653
No 41
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.08 E-value=2.1e+02 Score=25.48 Aligned_cols=53 Identities=15% Similarity=0.373 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHhhhhhhhcccCCCCccCCCCCCCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010877 371 LRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRMAELQKDYSELQRE 441 (498)
Q Consensus 371 lR~vVQvLf~EQlklr~~~~~~~~~~~~~~~~~~~~~~~~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~ 441 (498)
++..+|=|+.-|-.|-..+. ....+++.+..+.++++..+.+++.++..+|+|
T Consensus 64 aQl~ieYLl~~q~~L~~~~~------------------~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLE------------------QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888887776654322 224455666666666666666666666666655
No 42
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.49 E-value=1.9e+02 Score=23.59 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=26.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010877 413 EIKNLREELENVKTRMAELQKDYSELQREYEKLSN 447 (498)
Q Consensus 413 E~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~~~ 447 (498)
++..+..++++++.++.+++.+...++.|+.++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566777888888888888888888888877654
No 43
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=23.44 E-value=1.3e+02 Score=21.03 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=28.2
Q ss_pred ccChhHHHHHHHHHHhcCCC-chhHHHHHHHHHHH
Q 010877 148 TLGIDHFMRIITTIKVKGTK-PEIIGKCIMHYAKK 181 (498)
Q Consensus 148 ~L~id~f~rvi~am~~kg~~-~~~I~~~l~~Ya~k 181 (498)
.||.+.++++=...+..|+. .++|-.+|..|.++
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 46778888888888889974 88999999999864
No 44
>PLN03205 ATR interacting protein; Provisional
Probab=23.39 E-value=87 Score=34.48 Aligned_cols=29 Identities=31% Similarity=0.682 Sum_probs=26.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010877 412 IEIKNLREELENVKTRMAELQKDYSELQR 440 (498)
Q Consensus 412 rE~~~Lk~el~~mr~rv~eLE~~c~~m~~ 440 (498)
-|+..||.|++++..++.+.|.+|+.+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (652)
T PLN03205 134 LEIDRLKKELERVSKQLLDVEQECSQLKK 162 (652)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 47899999999999999999999998864
No 45
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.15 E-value=1.3e+02 Score=30.42 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=23.8
Q ss_pred CcchHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 010877 408 PSTSIEIKNLREELENVKTRMAEL---QKDYSELQRE 441 (498)
Q Consensus 408 ~~~~rE~~~Lk~el~~mr~rv~eL---E~~c~~m~~~ 441 (498)
..+..||+.||.|++.++.++.++ +.|-..+++.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355778999999999888888855 4444444443
No 46
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=22.85 E-value=1.4e+02 Score=30.21 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=11.1
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHH
Q 010877 411 SIEIKNLREELENVKTRMAELQK 433 (498)
Q Consensus 411 ~rE~~~Lk~el~~mr~rv~eLE~ 433 (498)
..||+.||..+.+|+..+..|.+
T Consensus 17 ~~e~~~Lk~kir~le~~l~~Lk~ 39 (236)
T PF12017_consen 17 KIENKKLKKKIRRLEKELKKLKQ 39 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554444444444443
No 47
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=22.30 E-value=1.2e+02 Score=30.31 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=25.6
Q ss_pred HhhhhHhcCCCChhHHHHHHHHHhhhhhhhccc
Q 010877 359 ACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQE 391 (498)
Q Consensus 359 Ac~HAaQNeRLPlR~vVQvLf~EQlklr~~~~~ 391 (498)
-|.|.++|.-..++.-++-+..+.-+++.-+..
T Consensus 13 ~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 13 YCANCVNNRLLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888887788888888888877777765544
No 48
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.68 E-value=2.5e+02 Score=23.29 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=30.9
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010877 410 TSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 447 (498)
Q Consensus 410 ~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~~~ 447 (498)
+...+..|+.|++.++.+..+|..+-..++.+.+++..
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35568888999999999988888888888888887754
No 49
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=21.52 E-value=1.9e+02 Score=25.92 Aligned_cols=60 Identities=18% Similarity=0.371 Sum_probs=41.5
Q ss_pred ccHHHHHhcCCCC-C-CCccceeecCCCCChHHHHHHHH-hhcCC----------ccccCCcchHHHHhhHhhhc
Q 010877 4 CGYIARLELQPSI-S-NLGYDLKLENFPGGSETFEIILK-FCYGL----------PIAFNPNNIAPLRCASEFLD 65 (498)
Q Consensus 4 sg~l~rli~~~~~-~-~~~~~i~L~dfPGGaeaFEl~ak-FCYG~----------~i~lt~~NVa~LrCAAeyLe 65 (498)
||-||-++....- + ....++.+.|||. -..|.|-. |-|.. .|+|-|.=+--|--||+||+
T Consensus 39 SgTiraml~gpg~~se~~~n~v~f~di~s--hiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 39 SGTIRAMLSGPGVFSEAEKNEVYFRDIPS--HILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLE 111 (112)
T ss_pred hhHHHHHHcCCccccccccceEEeccchH--HHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhc
Confidence 7889999885432 1 2456899999984 55665443 33432 46777777778999999997
No 50
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.49 E-value=1.1e+02 Score=31.25 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 010877 422 ENVKTRMAELQKDYSELQREYEKL 445 (498)
Q Consensus 422 ~~mr~rv~eLE~~c~~m~~~~~k~ 445 (498)
+|.|.|..|||.|....++++..+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L 112 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSL 112 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 51
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=21.38 E-value=1.5e+02 Score=24.25 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=22.1
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010877 409 STSIEIKNLREELENVKTRMAELQKDYSELQ 439 (498)
Q Consensus 409 ~~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~ 439 (498)
.+.+|+..|+.++..++..+.+|...+..++
T Consensus 55 ~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 55 EASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777777777777777777777776654
No 52
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.09 E-value=1.7e+02 Score=25.80 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=0.0
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHhhh
Q 010877 409 STSIEIKNLREELENVKTRMAELQKDYSEL--QREYEKL 445 (498)
Q Consensus 409 ~~~rE~~~Lk~el~~mr~rv~eLE~~c~~m--~~~~~k~ 445 (498)
..+.+...+...+++...|+..+|.+...| ++++.++
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L 70 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDL 70 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
No 53
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=20.82 E-value=1.5e+02 Score=26.99 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=37.2
Q ss_pred ceeecCCCC-ChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCcc
Q 010877 22 DLKLENFPG-GSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE 68 (498)
Q Consensus 22 ~i~L~dfPG-GaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMTE 68 (498)
.-.|..||| |+++=+.+.-||+| .++=|.-+...|-+..+..+.+
T Consensus 82 ~~~L~~l~GIG~~tA~~~l~~~~~--~~~~pvD~~v~r~~~~~~~~~~ 127 (158)
T cd00056 82 REELLALPGVGRKTANVVLLFALG--PDAFPVDTHVRRVLKRLGLIPK 127 (158)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHCC--CCCCccchhHHHHHHHhCCCCC
Confidence 445678888 99999999999999 5556669999999999988743
No 54
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=20.57 E-value=2.1e+02 Score=24.39 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=27.9
Q ss_pred CcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010877 408 PSTSIEIKNLREELENVKTRMAELQKDYSELQRE 441 (498)
Q Consensus 408 ~~~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~ 441 (498)
..+.+++..|+..|+.|-.||.+.+.+|..++++
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~E 52 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999999999999998888654
No 55
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.54 E-value=1.8e+02 Score=28.42 Aligned_cols=29 Identities=17% Similarity=0.461 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010877 417 LREELENVKTRMAELQKDYSELQREYEKL 445 (498)
Q Consensus 417 Lk~el~~mr~rv~eLE~~c~~m~~~~~k~ 445 (498)
-+.|++.+|.++.+||++...|++++.-+
T Consensus 104 ~~~e~~elr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 104 RKQEIMELRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555444444
No 56
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.37 E-value=2.1e+02 Score=27.00 Aligned_cols=37 Identities=35% Similarity=0.532 Sum_probs=24.5
Q ss_pred hHHHhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhhcc
Q 010877 411 SIEIKNLREELENVKTR------------MAELQKDYSELQREYEKLSN 447 (498)
Q Consensus 411 ~rE~~~Lk~el~~mr~r------------v~eLE~~c~~m~~~~~k~~~ 447 (498)
.+|.+.||.|+..+|.. ...|++.+..+..|++++.+
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~ 87 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNK 87 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555543 47788888888888888764
No 57
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.23 E-value=2e+02 Score=26.72 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=27.8
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010877 409 STSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 447 (498)
Q Consensus 409 ~~~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~~~ 447 (498)
.+..|+......++++...+.+||+.|.....++++..+
T Consensus 45 lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~ 83 (160)
T PF13094_consen 45 LLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEK 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666667777778888888888877777766554
No 58
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=20.14 E-value=2.3e+02 Score=26.40 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=25.9
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010877 411 SIEIKNLREELENVKTRMAELQKDYSELQREYEKLS 446 (498)
Q Consensus 411 ~rE~~~Lk~el~~mr~rv~eLE~~c~~m~~~~~k~~ 446 (498)
..++..|..+++.|+..++++..|-...+..++++.
T Consensus 80 E~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 80 EKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777777777777777776664
Done!