Citrus Sinensis ID: 010878

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
Protein Sequence
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG
Secondary Structure (PSIPRED)
ccEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHccccEEEEcccHHHHHHcHHcccccccEEEEEEccccHHHHHHHHHcccEEEEHHHHHHccccccccccccccccEEEEEEccccccccccHHHcHHHHHHHHHHHHHHccccccccccccEEEEEccHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccEEEEEEccccccccccccccccEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHccccccccEEEccccccccEEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccEEEEEccccccHHHHHHHEEcccEEEEEEccHHHHHHHHHcHcccccEEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHcccccccccccccccEEEEEEEcccccccccEEEccHHHHHHHHHHHHHHHHccccccHccEEEEHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccEEEEccccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccccEEEEEcccEEEcccccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MKIFAAQVeegkegkdgkpsvgpvyrnllasngfpsvdsdlntaWDIFSMSVQkypgnrmlgwrpfvdgkfgpyVWKTYKEVYEEVLQIVSALRAsgaepgcrvgiygancPQWVEAMEACNALSLICvplydtlgpgavnfILDHAEIDFVFVQDKKVkellspdcrsaqRLRVMVCFTSLTAEQKEMAVqtgikpyswdeflhlgkvnemeilppqpfnictimytsgtsgdpkgvvLTHETIATFVSGVDLFLDQfedkmtvddvylSFLPLAHILDRVIEEYFFRRGasvgyyhgdLNALRDDLMELKptllagvpRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMgykqreasplADLLAFRKVKARLGGRLRlvisggaplstEVEEFLRVTCCAFLVqgygltetcgpttvcfpdemcmvgtagpvsvyselrleevpemgysplddppcgevcvrgktlfsgyyknpdltresiidgwfhtg
Flexible Loop (DISEMBL)
MKIFAAqveegkegkdgkpsvGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEllspdcrsaqrlRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKaleelrplrRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEmgysplddppcgEVCVRGKTLfsgyyknpdltresiidgwfhtg
Low Complexity Region (SEG)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG
Disordered region (IsUnstruct)
***********************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF***
Disordered Region (DISOPRED)
*KIFAAQ****************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL**********PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG
Disordered Region (DISEMBL)
*****************KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG
Disordered Region (DISPRO)
*KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	498	2.2.26 [Sep-21-2011]
O22898	660	Long chain acyl-CoA synth	yes	no	1.0	0.754	0.706	0.0
Q9T0A0	666	Long chain acyl-CoA synth	no	no	0.997	0.746	0.517	1e-154
Q9T009	666	Long chain acyl-CoA synth	no	no	0.997	0.746	0.496	1e-148
Q9C7W4	665	Long chain acyl-CoA synth	no	no	0.993	0.744	0.502	1e-147
Q9XIA9	665	Long chain acyl-CoA synth	no	no	0.985	0.738	0.463	1e-130
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.897	0.637	0.401	4e-82
Q1ZXQ4	673	Fatty acyl-CoA synthetase	yes	no	0.971	0.719	0.348	9e-82
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.901	0.641	0.381	2e-80
Q55DR6	667	Fatty acyl-CoA synthetase	no	no	0.901	0.673	0.351	1e-75
Q9ULC5	683	Long-chain-fatty-acid--Co	yes	no	0.895	0.653	0.327	6e-67

>sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/498 (70%), Positives = 421/498 (84%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1   MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct: 61  LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct: 241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
              +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTG 498
           KNP+LT E + DGWFHTG
Sbjct: 481 KNPELTEEVMKDGWFHTG 498

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)).
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1

 Score =  544 bits (1402), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 257/497 (51%), Positives = 349/497 (70%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct: 5   KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ + YK  +M  G  
Sbjct: 305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTG 498
             DLT+E +IDGW HTG
Sbjct: 485 REDLTKEVLIDGWLHTG 501

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1

 Score =  525 bits (1351), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/497 (49%), Positives = 334/497 (67%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct: 5   KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct: 65  GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct: 245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + YK   M  G  
Sbjct: 305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
              ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTG 498
             DLT+E  IDGW HTG
Sbjct: 485 REDLTKEVFIDGWLHTG 501

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1

 Score =  522 bits (1344), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/496 (50%), Positives = 341/496 (68%), Gaps = 1/496 (0%)

Query: 4   FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
           +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct: 6   YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query: 63  WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
            R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct: 66  RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query: 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
           A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
           T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query: 243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
           E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
            L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +KYK   M  G   
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
            +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query: 423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
            T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query: 483 PDLTRESIIDGWFHTG 498
            DLT+E  IDGW HTG
Sbjct: 486 EDLTQEVFIDGWLHTG 501

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1

 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/492 (46%), Positives = 313/492 (63%), Gaps = 1/492 (0%)

Query: 8   VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
           VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct: 11  VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
           D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct: 71  DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
            VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
            V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
           +  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y YKL  M  G+ Q EASP
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
             D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
                 MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query: 487 RESIIDGWFHTG 498
            + +IDGWFHTG
Sbjct: 491 DQVLIDGWFHTG 502

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  305 bits (782), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 186/463 (40%), Positives = 256/463 (55%), Gaps = 16/463 (3%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L   G  
Sbjct: 82  DIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIP 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F   + +
Sbjct: 142 MGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAE-QKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ 218
             LLS  C S      +V       E    +   +G+K  S+   L+ G+ N     PP+
Sbjct: 202 NSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPK 259

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+LPLAHI
Sbjct: 260 PDDVATICYTSGTTGTPKGVVLTHANLIANVAGS-----SFSVKFFSSDVYISYLPLAHI 314

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
            +R  +      G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ GI  A++   
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374

Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
            L+ R+F+A Y  K   +  G   + ASP+ D L F K+K RLGGR+R + SG +PLS E
Sbjct: 375 GLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPE 431

Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPVSVYSELRLEEVPEMGY 457
           V EFL+V     + +GYG+TET     +   DE   + G  G  +   E++L +VPEM Y
Sbjct: 432 VMEFLKVCFGGRVTEGYGMTETS--CVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNY 489

Query: 458 SPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
           +  D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTG
Sbjct: 490 TSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTG 532

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1

 Score =  304 bits (779), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 174/500 (34%), Positives = 275/500 (55%), Gaps = 16/500 (3%)

Query: 4   FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
           +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct: 27  YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query: 62  GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct: 83  GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
               S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct: 143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           S+  E   +A + G+  Y++DE +  GK    + +  PP P  + TIMYTSGT+G PKGV
Sbjct: 202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct: 262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+  Y  K   +  
Sbjct: 317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct: 377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           E CG       D+   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ SG
Sbjct: 437 EGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSG 495

Query: 479 YYKNPDLTRESIIDGWFHTG 498
           YYK+ + TRE   DGWFHTG
Sbjct: 496 YYKDEEKTREEFKDGWFHTG 515

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  300 bits (768), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 176/461 (38%), Positives = 253/461 (54%), Gaps = 12/461 (2%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           ++ T  D F  +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L   G  
Sbjct: 82  EIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVN 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VG+Y  N P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F   + +
Sbjct: 142 QGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQP 219
             LLS        +R++V           +   TG+   S+ + L  G+ +     PP+P
Sbjct: 202 NILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKP 260

Query: 220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +I TI YTSGT+G PKGVVLTH  +   V+G  +     E +    DVY+S+LPLAHI 
Sbjct: 261 EDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSV-----EAEFFPSDVYISYLPLAHIY 315

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           +R  +      G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A++    
Sbjct: 316 ERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGV 375

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
           +++R+F+  Y  K   +  G   R  S   D L F K+K +LGGR+R + SG +PLS +V
Sbjct: 376 VKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDV 432

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP 459
            +FLR+     + +GYG+TET    +    D   + G  G  +   E++L +VPEM Y+ 
Sbjct: 433 MDFLRICFGCSVREGYGMTETSCVIS-AMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTS 491

Query: 460 LDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
            D P P GE+CVRG  +F GYYK+ + TRE +  DGW HTG
Sbjct: 492 DDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTG 532

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1

 Score =  284 bits (727), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 164/467 (35%), Positives = 261/467 (55%), Gaps = 18/467 (3%)

Query: 36  SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
           S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct: 48  SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154
             G   G R+GI+  N P+WV +  A    SL+ V LY TLG  A+ ++++H+EI  +  
Sbjct: 106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLC 165

Query: 155 QDKKVKELLSPDCRSAQRLRVMVCFTSL-TAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
           + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  +
Sbjct: 166 EGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQ 222

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
              P P ++CT++YTSG++G+PKGV+LTH  + + V+G +         +  +DV++S+L
Sbjct: 223 HEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANF----SPAGVIPEDVHMSYL 278

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ +   
Sbjct: 279 PLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFT 338

Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
           +     L++ +F+     K + + +G      +P+ D L F K K RLGGR++ ++SG A
Sbjct: 339 VNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSA 394

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVP 453
           PL  ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +VP
Sbjct: 395 PLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLIDVP 453

Query: 454 EMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
           EM Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTG
Sbjct: 454 EMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTG 500

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1

 Score =  255 bits (651), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 153/467 (32%), Positives = 250/467 (53%), Gaps = 21/467 (4%)

Query: 39  SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG- 97
           SD  T +++F   +        LG+R        PY W +YK+V +    + S L   G 
Sbjct: 72  SDAKTMYEVFQRGLAVSDNGPCLGYRK----PNQPYRWLSYKQVSDRAEYLGSCLLHKGY 127

Query: 98  -AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
            + P   VGI+  N P+W+ +  AC   S++ VPLYDTLGP A+  I++ A+I  V    
Sbjct: 128 KSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGPEAIVHIVNKADIAMVICDT 187

Query: 157 KKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI 214
            +   +L  +        L+V++       + K+   ++GI+  S  +  +LGK +  + 
Sbjct: 188 PQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQRGEKSGIEILSLYDAENLGKEHFRKP 247

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272
           +PP P ++  I +TSGT+GDPKG ++TH+ I   VS    FL   E     T DDV +S+
Sbjct: 248 VPPSPEDLSVICFTSGTTGDPKGAMITHQNI---VSNAAAFLKCVEHAYEPTPDDVAISY 304

Query: 273 LPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332
           LPLAH+ +R+++   +  GA VG++ GD+  L DD+  LKPTL   VPR+  +I++ ++ 
Sbjct: 305 LPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKTLKPTLFPAVPRLLNRIYDKVQN 364

Query: 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 392
             E   PL++ +       K   +  G  + ++    D L F K++  LGGR+R++++G 
Sbjct: 365 --EAKTPLKKFLLKLAVSSKFKELQKGIIRHDS--FWDKLIFAKIQDSLGGRVRVIVTGA 420

Query: 393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
           AP+ST V  F R      + + YG TE  G  T   P +        P++  + ++LE+V
Sbjct: 421 APMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTFTLPGDWTSGHVGVPLAC-NYVKLEDV 479

Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
            +M Y  +++   GEVC++G  +F GY K+P+ T+E++  DGW HTG
Sbjct: 480 ADMNYFTVNNE--GEVCIKGTNVFKGYLKDPEKTQEALDSDGWLHTG 524

Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	498
255548375	660	long-chain-fatty-acid CoA ligase, putati	1.0	0.754	0.805	0.0
225437622	662	PREDICTED: long chain acyl-CoA synthetas	1.0	0.752	0.791	0.0
224068616	665	predicted protein [Populus trichocarpa]	1.0	0.748	0.782	0.0
356505647	662	PREDICTED: long chain acyl-CoA synthetas	1.0	0.752	0.783	0.0
356572815	662	PREDICTED: long chain acyl-CoA synthetas	1.0	0.752	0.779	0.0
356534712	660	PREDICTED: long chain acyl-CoA synthetas	1.0	0.754	0.748	0.0
356499773	660	PREDICTED: long chain acyl-CoA synthetas	1.0	0.754	0.748	0.0
357511417	668	Annotation was added to scaffolds in Nov	1.0	0.745	0.736	0.0
449518374	660	PREDICTED: long chain acyl-CoA synthetas	1.0	0.754	0.751	0.0
297824813	660	long-chain-fatty-acid--CoA ligase family	1.0	0.754	0.712	0.0

>gi|255548375|ref|XP_002515244.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223545724|gb|EEF47228.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis]

 Score =  859 bits (2219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/498 (80%), Positives = 449/498 (90%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK+FA +VEEG+EGKDG PSVGPVYRN+L+ N FP+ D D++TAWD+FS+SV+KYP N+M
Sbjct: 1   MKVFAVEVEEGREGKDGNPSVGPVYRNVLSKNEFPAPDCDMDTAWDLFSVSVKKYPENKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV+GK GPYVWKTYKEVYEEVLQI SALRASGAEPGCRVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRKFVNGKVGPYVWKTYKEVYEEVLQIGSALRASGAEPGCRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SL+CVPLYDTLGP AVNFI+DHAEIDF FVQDKKVKELL+PDC SA RL+ +VCFT
Sbjct: 121 CSAHSLVCVPLYDTLGPNAVNFIVDHAEIDFAFVQDKKVKELLNPDCGSASRLKTVVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q  IKPYSW+EFL LGK N  E  PP PF+ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAEQIQIKPYSWEEFLRLGKENPSETSPPHPFSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + +F+  VDLF++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFFR+GA+VGYYHGD
Sbjct: 241 THEAVMSFLRSVDLFMEQFEDKMTVDDVYLSFLPLAHILDRMIEEYFFRKGAAVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNAL+DDLMELKPT LAGVPRVFEKIHEGIKKALEEL P+RRRIFDALYKYKL WMN+GY
Sbjct: 301 LNALKDDLMELKPTFLAGVPRVFEKIHEGIKKALEELNPVRRRIFDALYKYKLYWMNLGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           KQ+ ASPLADLLAFRKVKA+LGGRLRL+ISG APLSTEVEEFLRVTCCAF+VQGYGLTET
Sbjct: 361 KQKYASPLADLLAFRKVKAKLGGRLRLIISGAAPLSTEVEEFLRVTCCAFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGP T+ FPDEMCM+G  G V V +ELRLEEVPEMGY+PL +PP GE+CVRGKTLFSGYY
Sbjct: 421 CGPVTIGFPDEMCMMGAVGAVCVCNELRLEEVPEMGYNPLGNPPRGEICVRGKTLFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTG 498
           KNP+LTRE + DGWFHTG
Sbjct: 481 KNPELTRECMKDGWFHTG 498

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437622|ref|XP_002278345.1| PREDICTED: long chain acyl-CoA synthetase 1 [Vitis vinifera] gi|297744008|emb|CBI36978.3| unnamed protein product [Vitis vinifera]

 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/498 (79%), Positives = 444/498 (89%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA QVE G+EG+DGKPSVGPVYRN LA +GFP +DS+LNTAWD   +S +KYPGNRM
Sbjct: 1   MKTFAVQVENGREGRDGKPSVGPVYRNFLAKSGFPPMDSNLNTAWDNLRISSEKYPGNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV GK GPY WKTY+EVYEE+L I SAL+ASGA+PG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWREFVGGKLGPYKWKTYREVYEEILHIGSALQASGAQPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SLICVPLYDTLGPGAV++I+DHAE+DFVFVQDKKVKELL+PDCRSA+RL++MVCFT
Sbjct: 121 CSAYSLICVPLYDTLGPGAVDYIIDHAEVDFVFVQDKKVKELLNPDCRSAKRLKLMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S T EQK+ A   GIKPYSWDEFLH+GK N  E+ PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SPTEEQKDKAADIGIKPYSWDEFLHMGKENPSEVFPPQPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + T V GVD+F++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFF +GASVGYYHGD
Sbjct: 241 THENVTTIVRGVDIFMEQFEDKMTVDDVYLSFLPLAHILDRIIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           +NALR+DLMELKPTL AGVPRVFE++HEGIKKA++EL P+RRRIF  LYKYKL+WMN GY
Sbjct: 301 MNALREDLMELKPTLFAGVPRVFERVHEGIKKAVQELNPIRRRIFGVLYKYKLSWMNSGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K REASPLADLLAFRKVKARLGGR+RL+ISGGAPLSTEVEEFLRVT CAFL QGYGLTET
Sbjct: 361 KHREASPLADLLAFRKVKARLGGRVRLIISGGAPLSTEVEEFLRVTSCAFLTQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG T++ FPDEM M+GT G VSVYSELRLEEVPEMGY P  DPP GE+CVRGKT+F+GY+
Sbjct: 421 CGLTSIGFPDEMSMIGTVGAVSVYSELRLEEVPEMGYDPFGDPPRGEICVRGKTIFAGYH 480

Query: 481 KNPDLTRESIIDGWFHTG 498
           KNP+LT ESI DGWFHTG
Sbjct: 481 KNPELTLESIRDGWFHTG 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068616|ref|XP_002302784.1| predicted protein [Populus trichocarpa] gi|222844510|gb|EEE82057.1| predicted protein [Populus trichocarpa]

 Score =  841 bits (2173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/501 (78%), Positives = 444/501 (88%), Gaps = 3/501 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           +K FAAQVEEG+EGKDGKPSVGPVYRNLL+   +P +D D+ T+WDIFS S +KYP  +M
Sbjct: 3   LKAFAAQVEEGREGKDGKPSVGPVYRNLLSKKEYPPLDRDVTTSWDIFSSSAKKYPEYKM 62

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTYKEVY+EVLQI SALRASGAEPG RVGIYG+NCPQW+EAMEA
Sbjct: 63  LGWRKFVDGKVGPYVWKTYKEVYDEVLQISSALRASGAEPGYRVGIYGSNCPQWIEAMEA 122

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SL+CVPLYDT+GP AVNFI+DHAEIDFVFVQDKKVKELL PDC SAQRL+ +VCFT
Sbjct: 123 CNAQSLVCVPLYDTIGPRAVNFIIDHAEIDFVFVQDKKVKELLDPDCASAQRLKAIVCFT 182

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q GIK YSW+E+L +GK N  EI PPQP +ICTIMYTSGTSGDPKGVV+
Sbjct: 183 SLTEEEKDRAAQMGIKSYSWEEYLCMGKENPSEIFPPQPLSICTIMYTSGTSGDPKGVVI 242

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
            HET+A FV G+DLF++QFEDKMT DDVYLSFLPLAH+LDR+IEEYFFR+GASVGYYHGD
Sbjct: 243 LHETVAAFVRGIDLFMEQFEDKMTTDDVYLSFLPLAHVLDRMIEEYFFRKGASVGYYHGD 302

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIK---KALEELRPLRRRIFDALYKYKLAWMN 357
           LNALRDDLMELKPT LAGVPRVFEKI EG++   KAL+EL PLRR IFD LY+YKL WMN
Sbjct: 303 LNALRDDLMELKPTCLAGVPRVFEKIQEGMEIPIKALQELSPLRRNIFDVLYRYKLGWMN 362

Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
            GY+Q+ ASPLADLLAFRKVKA+LGGRLRL+I GGA LSTEVEEFLRVT CAF++QGYGL
Sbjct: 363 RGYRQKYASPLADLLAFRKVKAKLGGRLRLIICGGASLSTEVEEFLRVTSCAFVIQGYGL 422

Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
           TE+CGP T+ FPDEMCM+GT G V+VY++L LEEVPEMGY PL +PPCGE+C+RGKTLFS
Sbjct: 423 TESCGPATMAFPDEMCMLGTVGAVAVYNDLCLEEVPEMGYDPLGNPPCGEICLRGKTLFS 482

Query: 478 GYYKNPDLTRESIIDGWFHTG 498
           GYYKNP+LTRES+ DGWFHTG
Sbjct: 483 GYYKNPELTRESMKDGWFHTG 503

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505647|ref|XP_003521601.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/498 (78%), Positives = 441/498 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KYP NRM
Sbjct: 1   MKSFAAKVEEGREGINGELSIGPVYRNLLSKNQFPPLDPDLSTAWDIFSMAVKKYPKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVD K GPYVWKTYKEVY+EVL I SALRASGAE G ++GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDAKIGPYVWKTYKEVYDEVLHIGSALRASGAELGSKIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DH E+DFVFVQD+KV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHGELDFVFVQDRKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW EFLH+GK N   I  PQP NICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAISIGIKPYSWQEFLHMGKENPSNISAPQPNNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE IATFV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENIATFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG TT+ +PDEMCM+GT GPVSVY+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSVYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTG 498
           KNP+LTRE+I DGWFHTG
Sbjct: 481 KNPELTREAIKDGWFHTG 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572815|ref|XP_003554561.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/498 (77%), Positives = 441/498 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA +VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KY  NRM
Sbjct: 1   MKGFAVKVEEGREGTNGELSIGPVYRNLLSKNEFPPLDPDLSTAWDIFSMAVKKYRKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTY+EVY+EVL I SALRASGAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDGKIGPYVWKTYEEVYDEVLHIGSALRASGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLGPGAVNFI+DH E+DFVFVQDKKV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHNLICVPLYDTLGPGAVNFIIDHGELDFVFVQDKKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW+EFLH+GK N   I PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAIAIGIKPYSWEEFLHMGKENPSNISPPQPNSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE I  FV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENITVFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG TT+ +PDEMCM+GT GPVS+Y+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSIYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTG 498
           KNP+LTRE+I DGWFHTG
Sbjct: 481 KNPELTREAIKDGWFHTG 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534712|ref|XP_003535896.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/498 (74%), Positives = 431/498 (86%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VDGK GPYVWKTYKEVY+EVL + SALRASG+EPG ++GIYG+NCP+W+ AME 
Sbjct: 61  LGKRKIVDGKIGPYVWKTYKEVYDEVLHMSSALRASGSEPGTKIGIYGSNCPEWIVAMEV 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S ICVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFICVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +LT E+K  A   GIKPYSW EFLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 TLTEEEKAKATAIGIKPYSWHEFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TYENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY YKL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K REAS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHREASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGPTT+ FPDEMCM+GT G VS+Y+E++LEEVPEMGY+PL+ PPCGE+CVRGKT+F+ YY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIKLEEVPEMGYNPLETPPCGEICVRGKTVFTAYY 480

Query: 481 KNPDLTRESIIDGWFHTG 498
           KNP+LT+E+I DGWFHTG
Sbjct: 481 KNPELTKEAIKDGWFHTG 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499773|ref|XP_003518711.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  810 bits (2092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/498 (74%), Positives = 431/498 (86%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VD K GPYVWKTYKEVY+EVL + SALRASGAEPG ++GIYG+NCP+W+ AMEA
Sbjct: 61  LGKRKIVDEKIGPYVWKTYKEVYDEVLHMSSALRASGAEPGTKIGIYGSNCPEWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S +CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K  A   GIKPYSW +FLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKAKATAIGIKPYSWHDFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TNENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY YKL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K R+AS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHRQASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGPTT+ FPDEMCM+GT G VS+Y+E+ LEEVPEMGY+PL+ PPCGE+CVRGKT+F+GYY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIMLEEVPEMGYNPLETPPCGEICVRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTG 498
           KNP+LT+E+I DGWFHTG
Sbjct: 481 KNPELTKEAIKDGWFHTG 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511417|ref|XP_003625997.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355501012|gb|AES82215.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula]

 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/504 (73%), Positives = 433/504 (85%), Gaps = 6/504 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EGK+GK SVGPVYRNLLA + FP  D DL TAWDIFS++ +KYP NRM
Sbjct: 1   MKSFAAKVEEGREGKNGKLSVGPVYRNLLAKDQFPPSDPDLTTAWDIFSVAAKKYPQNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGKFG YVWKTYK+VY+EV+ I SALRASGA+ G R+G+YG+NCPQW+ AMEA
Sbjct: 61  LGWREFVDGKFGSYVWKTYKQVYDEVMHIGSALRASGAQHGSRIGVYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKV +LLSPDC+SA RL+ +VCFT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVMQLLSPDCKSASRLKAIVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
            LT E+K+ A   G+KPYSW+EFL +GK     I PPQ  +ICTIMYTSGTSGDP+GVVL
Sbjct: 181 KLTNEEKDKATSIGVKPYSWEEFLQMGKETPSTISPPQAHDICTIMYTSGTSGDPQGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG- 299
           THE I  FV G+D+F++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHG 
Sbjct: 241 THENITYFVRGMDIFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGV 300

Query: 300 -----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354
                DL ALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LYK KL 
Sbjct: 301 YSIIHDLTALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYKRKLG 360

Query: 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG 414
           WM  GYK   ASP ADLLAFRKVKARLGGR+RL+I+GGAPLS+E+EEFLRVT  AF+ QG
Sbjct: 361 WMKKGYKHCNASPFADLLAFRKVKARLGGRVRLIITGGAPLSSEIEEFLRVTSGAFVCQG 420

Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
           YGLTETCG TT+ FPDEMCM+GT GPVS+Y+E++LEEVPEMGY+PL +P CGE+C+RGK+
Sbjct: 421 YGLTETCGSTTLAFPDEMCMLGTVGPVSIYNEIQLEEVPEMGYNPLGNPSCGEICLRGKS 480

Query: 475 LFSGYYKNPDLTRESIIDGWFHTG 498
           +FSGY+KNP+LT+ESI+DGWFHTG
Sbjct: 481 VFSGYHKNPELTKESIVDGWFHTG 504

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518374|ref|XP_004166217.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Cucumis sativus]

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/499 (75%), Positives = 429/499 (85%), Gaps = 1/499 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGKDGKPSVGPVYRN+LA   FPS   DL+T+WD+FS+S  KY   RM
Sbjct: 1   MKRFSVKVEEGREGKDGKPSVGPVYRNVLAEKEFPSPYEDLSTSWDLFSVSANKYAERRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPY+WKTYKEVY +VL I SALRA GAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWRKFVDGKPGPYIWKTYKEVYGDVLNIGSALRAIGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SLICVPLYDTLG GAVNFI+DHAEID VF+QDKK KELL+  C   +RL+V +CFT
Sbjct: 121 CNAHSLICVPLYDTLGHGAVNFIIDHAEIDIVFIQDKKAKELLNSGCTIPERLKVFICFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV 239
           SL  E+K  A   G+KPYSWDEFL L  K N  EI PP+P +ICTIMYTSGTSG PKGVV
Sbjct: 181 SLKEEEKISATNNGMKPYSWDEFLRLVRKENPSEISPPRPLDICTIMYTSGTSGTPKGVV 240

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           LT ETI TF+ GVD+ ++QFEDKMT DDVYLSFLPLAHILDR +EEYFFR+GASVGYYHG
Sbjct: 241 LTQETITTFIRGVDIQMEQFEDKMTEDDVYLSFLPLAHILDRTVEEYFFRKGASVGYYHG 300

Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359
           DL+A++DDLMELKPTLL GVPRVFEKIHEGIK+A++ L P+RR+ FD LYKYKL+WMN G
Sbjct: 301 DLDAIKDDLMELKPTLLVGVPRVFEKIHEGIKQAVQVLNPVRRKAFDLLYKYKLSWMNSG 360

Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE 419
           YKQ++ASPLADLLAFRKVKARLGGRLRL+ISGGA LSTEVEEFLRVTCCAF VQGYGLTE
Sbjct: 361 YKQKDASPLADLLAFRKVKARLGGRLRLIISGGAALSTEVEEFLRVTCCAFFVQGYGLTE 420

Query: 420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY 479
           TCGPTT+ FPDEMCM+G  G V++++EL LEEVP+MGY+PL D PCGE+CVRGKT+F+ Y
Sbjct: 421 TCGPTTIGFPDEMCMLGNVGGVTLFNELCLEEVPDMGYNPLGDRPCGEICVRGKTVFTEY 480

Query: 480 YKNPDLTRESIIDGWFHTG 498
           YK+P+LT+ESI DGWFHTG
Sbjct: 481 YKDPELTKESIKDGWFHTG 499

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824813|ref|XP_002880289.1| long-chain-fatty-acid--CoA ligase family protein [Arabidopsis lyrata subsp. lyrata] gi|297326128|gb|EFH56548.1| long-chain-fatty-acid--CoA ligase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/498 (71%), Positives = 419/498 (84%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+ EEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1   MKSFAAKAEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA GAEPGCRVGIYG NCPQW+ AMEA
Sbjct: 61  LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAVGAEPGCRVGIYGINCPQWIIAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +++ E    A + G+K YSW +FLH+G+    E  PP+  NICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEETNPPKALNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           TH+ +ATFV G+D+F+DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHGD
Sbjct: 241 THQAVATFVVGMDIFMDQFEDKMTHDDVYLSFLPLAHILDRLNEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAWMN GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKHKLAWMNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
              +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVAEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTG 498
           KNP+LT E I DGWFHTG
Sbjct: 481 KNPELTEEVIKDGWFHTG 498

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	498
TAIR|locus:2065195	660	LACS1 "AT2G47240" [Arabidopsis	1.0	0.754	0.706	2.2e-201
TAIR|locus:2138141	666	LACS4 "long-chain acyl-CoA syn	0.997	0.746	0.517	3.7e-142
TAIR|locus:2136148	666	AT4G11030 [Arabidopsis thalian	0.997	0.746	0.496	3.2e-136
TAIR|locus:2014265	665	LACS3 "long-chain acyl-CoA syn	0.993	0.744	0.502	5.2e-136
TAIR|locus:2010177	665	LACS2 "long-chain acyl-CoA syn	0.985	0.738	0.463	9.5e-121
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.901	0.640	0.404	5.8e-82
DICTYBASE|DDB_G0269474	673	fcsB "fatty acyl-CoA synthetas	0.967	0.716	0.352	1.4e-78
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.909	0.647	0.382	3.4e-77
DICTYBASE|DDB_G0269242	667	fcsA "long-chain-fatty-acid-Co	0.897	0.670	0.356	3.6e-73
UNIPROTKB|F1NNV2	683	ACSL5 "Uncharacterized protein	0.917	0.669	0.329	7.7e-71

TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1949 (691.1 bits), Expect = 2.2e-201, P = 2.2e-201
 Identities = 352/498 (70%), Positives = 421/498 (84%)

Query:     1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
             MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct:     1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query:    61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct:    61 LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
             C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct:   121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
             +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct:   181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query:   241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
             TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct:   241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query:   301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
             LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct:   301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query:   361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
                +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct:   361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query:   421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
              G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct:   421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query:   481 KNPDLTRESIIDGWFHTG 498
             KNP+LT E + DGWFHTG
Sbjct:   481 KNPELTEEVMKDGWFHTG 498

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1390 (494.4 bits), Expect = 3.7e-142, P = 3.7e-142
 Identities = 257/497 (51%), Positives = 349/497 (70%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct:     5 KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct:    65 GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct:   245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
               L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ + YK  +M  G  
Sbjct:   305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query:   362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
               EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query:   422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
               T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query:   482 NPDLTRESIIDGWFHTG 498
               DLT+E +IDGW HTG
Sbjct:   485 REDLTKEVLIDGWLHTG 501

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1334 (474.7 bits), Expect = 3.2e-136, P = 3.2e-136
 Identities = 247/497 (49%), Positives = 334/497 (67%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct:     5 KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct:    65 GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct:   245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
               L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + YK   M  G  
Sbjct:   305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query:   362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
                ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query:   422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
               T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query:   482 NPDLTRESIIDGWFHTG 498
               DLT+E  IDGW HTG
Sbjct:   485 REDLTKEVFIDGWLHTG 501

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1332 (473.9 bits), Expect = 5.2e-136, P = 5.2e-136
 Identities = 249/496 (50%), Positives = 341/496 (68%)

Query:     4 FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
             +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct:     6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query:    63 WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
              R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct:    66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query:   123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
             A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct:   126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query:   183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
             T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct:   186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query:   243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
             E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct:   246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query:   303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
              L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +KYK   M  G   
Sbjct:   306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query:   363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
              +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct:   366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query:   423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
              T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct:   426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query:   483 PDLTRESIIDGWFHTG 498
              DLT+E  IDGW HTG
Sbjct:   486 EDLTQEVFIDGWLHTG 501

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
 Identities = 228/492 (46%), Positives = 313/492 (63%)

Query:     8 VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
             VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct:    11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query:    68 DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
             D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct:    71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query:   128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
              VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct:   131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query:   188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
             E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct:   191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query:   248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
              V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct:   251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query:   308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
             +  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y YKL  M  G+ Q EASP
Sbjct:   311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query:   368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
               D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct:   371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query:   428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
                   MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct:   431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query:   487 RESIIDGWFHTG 498
              + +IDGWFHTG
Sbjct:   491 DQVLIDGWFHTG 502

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IGI

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 191/472 (40%), Positives = 265/472 (56%)

Query:    34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
             FP    D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L
Sbjct:    77 FPD-HPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGL 135

Query:    94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
                G   G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F
Sbjct:   136 VHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIF 195

Query:   154 VQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
                + +  LLS  C S    +R++V    L      +   +G+K  S+   L+ G+ N  
Sbjct:   196 CVAETLNSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQ 253

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272
                PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+
Sbjct:   254 RFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISY 308

Query:   273 LPLAHILDR---VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             LPLAHI +R   ++  YF   G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ G
Sbjct:   309 LPLAHIYERANQILTVYF---GVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAG 365

Query:   330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
             I  A++    L+ R+F+A Y  K   +  G   + ASP+ D L F K+K RLGGR+R + 
Sbjct:   366 IINAVKTSGGLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMT 422

Query:   390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELR 448
             SG +PLS EV EFL+V     + +GYG+TET C  + +   D +   G  G  +   E++
Sbjct:   423 SGASPLSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNL--TGHVGSPNPACEVK 480

Query:   449 LEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
             L +VPEM Y+  D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTG
Sbjct:   481 LVDVPEMNYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTG 532

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 177/502 (35%), Positives = 277/502 (55%)

Query:     4 FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
             +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct:    27 YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query:    62 GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct:    83 GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
                 S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct:   143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK-VN-EMEILPPQPFNICTIMYTSGTSGDPKGV 238
             S+  E   +A + G+  Y++DE +  GK  N + +  PP P  + TIMYTSGT+G PKGV
Sbjct:   202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query:   239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
             ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct:   262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query:   299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
             GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+  Y  K   +  
Sbjct:   317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query:   359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
             G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct:   377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query:   419 ETCGPTTVC--FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476
             E CG    C    DE   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ 
Sbjct:   437 EGCGGDA-CKRLDDES--VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSIS 493

Query:   477 SGYYKNPDLTRESIIDGWFHTG 498
             SGYYK+ + TRE   DGWFHTG
Sbjct:   494 SGYYKDEEKTREEFKDGWFHTG 515

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;ISS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 179/468 (38%), Positives = 257/468 (54%)

Query:    34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
             FP    ++ T  D F  +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L
Sbjct:    77 FPD-HPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGL 135

Query:    94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
                G   G  VG+Y  N P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F
Sbjct:   136 LFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIF 195

Query:   154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
                + +  LLS        +R++V           +   TG+   S+ + L  G+ +   
Sbjct:   196 CVPQTLNILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHP 254

Query:   214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
               PP+P +I TI YTSGT+G PKGVVLTH  +   V+G  +  + F       DVY+S+L
Sbjct:   255 FSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-----DVYISYL 309

Query:   274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
             PLAHI +R  +      G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A
Sbjct:   310 PLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSA 369

Query:   334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
             ++    +++R+F+  Y  K   +  G   R  S   D L F K+K +LGGR+R + SG +
Sbjct:   370 VKSSGVVKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGAS 426

Query:   394 PLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
             PLS +V +FLR+     + +GYG+TET C  + +   D +   G  G  +   E++L +V
Sbjct:   427 PLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLS--GHVGSPNPACEVKLVDV 484

Query:   453 PEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
             PEM Y+  D P P GE+CVRG  +F GYYK+ + TRE +  DGW HTG
Sbjct:   485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTG 532

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 167/469 (35%), Positives = 264/469 (56%)

Query:    36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
             S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct:    48 SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query:    95 ASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
               G   G R+GI+  N P+WV + M A N  SL+ V LY TLG  A+ ++++H+EI  + 
Sbjct:   106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNH-SLVPVALYATLGANAIEYVVNHSEISVLL 164

Query:   154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLT-AEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
              + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  
Sbjct:   165 CEGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPA 221

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-DDVYLS 271
             +   P P ++CT++YTSG++G+PKGV+LTH  + + V+G +     F     + +DV++S
Sbjct:   222 QHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGAN-----FSPAGVIPEDVHMS 276

Query:   272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
             +LPLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ + 
Sbjct:   277 YLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLW 336

Query:   332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
               +     L++ +F+     K + + +G      +P+ D L F K K RLGGR++ ++SG
Sbjct:   337 FTVNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSG 392

Query:   392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
              APL  ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +
Sbjct:   393 SAPLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLID 451

Query:   452 VPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
             VPEM Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTG
Sbjct:   452 VPEMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTG 500

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0010009 "external side of endosome membrane" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NNV2 ACSL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 158/479 (32%), Positives = 257/479 (53%)

Query:    28 LLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEV 86
             LL  N   S    D  T ++ F   +        LG+R        PY W TYK+V +  
Sbjct:    60 LLTDNNLVSYYFEDSKTLYEAFQRGLHASGNGNCLGYRK----PNQPYQWLTYKQVLDRA 115

Query:    87 LQIVSALRASGAEPGCR--VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFIL 144
               + S L   G +P     +GI+  N P+W+ +  AC   S++ VPLYDTLGP A+ +I+
Sbjct:   116 QHLGSGLLQKGCKPSSDQFIGIFAQNRPEWIISEYACYTYSMVAVPLYDTLGPDAILYIV 175

Query:   145 DHAEIDFVFVQDKKVKELLSPDCRSAQR--LRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
             + A+I  V     +  ++L  +C   +   L+ ++       E K+   + G++  +  E
Sbjct:   176 NKADIGIVICDKPEKAQILLENCEQGKTPCLKTIILMDLFDKELKDRGAKVGVEILALQE 235

Query:   203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
                LG+ N  + +PP P ++C + +TSGT+G+PKG +LTHE +   V+    FL   ED 
Sbjct:   236 AEELGRNNIRKPVPPGPEDLCIVCFTSGTTGNPKGAMLTHENV---VANAAAFLRTIEDT 292

Query:   263 M--TVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
             +  T  DV +S+LPLAH+ +RV++   +  GA VG++ GD+  L DD+  LKPT+   VP
Sbjct:   293 VECTTSDVSISYLPLAHMFERVVQTVMYSCGAKVGFFQGDIKLLTDDMKTLKPTIFPVVP 352

Query:   321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
             R+  +I++ I+       P+++ + +     K+  +  G  + ++  L D L F+KV+  
Sbjct:   353 RLLNRIYDKIQSGANT--PMKKFLLNFAATMKMIEVKQGIIRNDS--LLDKLVFKKVQET 408

Query:   381 LGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 440
             +GGR+R++++G AP+S  V +FLR      + + YG TE     T   P +    G  GP
Sbjct:   409 MGGRVRIMVTGAAPISPSVLKFLRSALGCQVFEAYGQTECSAGCTFSMPGDWT-TGHVGP 467

Query:   441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
               V + ++L++V EM Y   ++   GEVC++G  +F GY K+P+ T E+I  DGW HTG
Sbjct:   468 PLVCNIIKLDDVEEMNYFSSNNE--GEVCIKGPNVFKGYLKDPEKTAEAIDKDGWLHTG 524

GO:0003824 "catalytic activity" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22898	LACS1_ARATH	6, ., 2, ., 1, ., 3	0.7068	1.0	0.7545	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.963
3rd Layer	6.2.1.3	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	498
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.0
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.0
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-130
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-106
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-83
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	2e-80
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	9e-76
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	5e-71
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	4e-67
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	5e-63
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	9e-61
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	3e-46
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-45
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-38
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	6e-37
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	9e-37
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	3e-33
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	9e-32
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	3e-31
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-30
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-28
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-28
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	5e-28
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-27
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-26
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-25
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-24
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	1e-22
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-22
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	3e-22
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-22
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	3e-20
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	2e-19
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	5e-19
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	6e-19
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-18
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	2e-18
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-17
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-16
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-16
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-15
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-14
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	1e-14
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-14
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	4e-14
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	5e-14
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	8e-14
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-13
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-13
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-13
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-13
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	3e-13
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	4e-13
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-13
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	6e-13
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	7e-13
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	7e-13
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	1e-12
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	1e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-12
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	4e-12
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-11
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	4e-11
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	4e-11
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	4e-11
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	4e-11
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	6e-11
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	9e-11
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-10
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	1e-10
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	1e-10
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	2e-10
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	3e-10
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	3e-10
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	5e-10
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-09
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-09
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-09
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-09
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	6e-09
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	8e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	8e-09
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	8e-09
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	9e-09
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-08
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	1e-08
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	1e-08
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	1e-08
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-08
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-08
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-08
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-08
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	6e-08
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	7e-08
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	9e-08
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	1e-07
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-07
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-07
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-07
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	6e-07
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-06
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-06
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	1e-06
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-06
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-06
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	2e-06
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-06
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-06
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	4e-06
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	5e-06
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	5e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	5e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-06
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	5e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-06
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	6e-06
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	7e-06
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	8e-06
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-05
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-05
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	4e-05
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-05
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	8e-05
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	9e-05
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	9e-05
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	9e-05
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-04
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	1e-04
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-04
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	1e-04
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	2e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-04
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-04
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	3e-04
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	3e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	4e-04
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	5e-04
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	6e-04
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	7e-04
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	8e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	0.001
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	0.001
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	0.002
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	0.002
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	0.002
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	0.002
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	0.002
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.002
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.002
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.003
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	0.003
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	0.003
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	0.003
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	0.004
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	0.004
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	0.004
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	0.004

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 1015 bits (2627), Expect = 0.0
 Identities = 394/498 (79%), Positives = 443/498 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAAQVEEG +GKDGKPSVGPVYRNLL+  GFP +DSD+ TAWDIFS SV+KYP N+M
Sbjct: 1   MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VDGK GPY+WKTYKEVYEEVLQI SALRASGAEPG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SLICVPLYDTLGPGAV++I+DHAEIDFVFVQDKK+KELL PDC+SA+RL+ +V FT
Sbjct: 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S+T E+ + A Q G+K YSW +FLH+GK N  E  PP+P +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE +ATFV GVDLF++QFEDKMT DDVYLSFLPLAHILDR+IEEYFFR+GASVGYYHGD
Sbjct: 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTLLAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYKYKLAWMN GY
Sbjct: 301 LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
             ++ASP+AD LAFRKVKA+LGGRLRL+ISGGAPLSTE+EEFLRVT CAF+VQGYGLTET
Sbjct: 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            GPTT+ FPDEMCM+GT G  +VY+ELRLEEVPEMGY PL +PP GE+CVRGK LFSGYY
Sbjct: 421 LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTG 498
           KNP+LT E + DGWFHTG
Sbjct: 481 KNPELTEEVMKDGWFHTG 498

Length = 660

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  583 bits (1505), Expect = 0.0
 Identities = 250/500 (50%), Positives = 333/500 (66%), Gaps = 5/500 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
            + +  +VEE +    GKPS GPVYR++ A +G   + +D+++ W  FS +V+KYP N+M
Sbjct: 2   AETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQM 61

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R   D K GPYVW TYKEVY+  ++I SA+R+ G  PG R GIYG+NCP+W+ AMEA
Sbjct: 62  LGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVC 178
           CN+  +  VPLYDTLG  AV FI++HAE+   FVQ+ K+  +LS  P C S   L+ +V 
Sbjct: 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSS--NLKTIVS 179

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           F  +++EQKE A + G+  +SW+EF  +G ++  E+ P Q  +ICTIMYTSGT+G+PKGV
Sbjct: 180 FGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGV 238

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           +LT+  I   V   D  L   +   T +D Y S+LPLAH+ D+VIE Y   +GAS+G++ 
Sbjct: 239 ILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQ 298

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           GD+  L +D+  LKPT+  GVPRV+++I+ GI + +     LR+++FD  Y YKL  +  
Sbjct: 299 GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK 358

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G KQ EASP  D L F K+K  LGGR+RL++SG APL   VEEFLRVT C+ L QGYGLT
Sbjct: 359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLT 418

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           E+CG       +   MVGT G      E RLE VPEMGY  L D P GE+C+RG TLFSG
Sbjct: 419 ESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSG 478

Query: 479 YYKNPDLTRESIIDGWFHTG 498
           Y+K  DLT E +IDGWFHTG
Sbjct: 479 YHKRQDLTEEVLIDGWFHTG 498

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  575 bits (1484), Expect = 0.0
 Identities = 259/497 (52%), Positives = 350/497 (70%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  QVEEGKEG DG+PSVGPVYR++ A +GFP+    +++ WD+F MSV+KYP N ML
Sbjct: 5   KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L      +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ +FD+ + YK   M  G  
Sbjct: 305 KLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTG 498
             DLT+E +IDGW HTG
Sbjct: 485 REDLTKEVLIDGWLHTG 501

Length = 666

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  525 bits (1356), Expect = 0.0
 Identities = 192/428 (44%), Positives = 257/428 (60%), Gaps = 45/428 (10%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GPY W +YKEV E  L I S LRA G +PG ++GI+  N P+W+   +AC + SL+ VPL
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           YDTLG  A+ +IL+  EI  VF    KV                                
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                 YS++E   LGK N++   PP+P ++ TIMYTSGT+G+PKGV+LTH  I   V+G
Sbjct: 89  ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL 311
           ++  + +F   +   DVY+S+LPLAHI +RV+E      G  +GYY GD   L+ D+ EL
Sbjct: 143 INKIVPEF---IGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
           KPT+  GVPRV ++I++GI   +     L+R +F+  Y YKLA +  G     ASPL D 
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           L F+K+KA LGGR+RL++SGGAPLS + +EFLRV     ++QGYGLTETC   T+  P +
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490
               G  GP     E++L +VPEMGY   DDPP GE+C+RG  +F GYYKNP+ T E+  
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376

Query: 491 IDGWFHTG 498
            DGWFHTG
Sbjct: 377 EDGWFHTG 384

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  392 bits (1008), Expect = e-130
 Identities = 188/484 (38%), Positives = 271/484 (55%), Gaps = 23/484 (4%)

Query: 24  VYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTY 79
           VYR+  +     + FP    ++ T  D F  +V+ +   + LG R  VDG  G Y W TY
Sbjct: 23  VYRSARSPLKLVSRFPDHP-EIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTY 81

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            E       I S L   G   G  VG+Y  N P+W+    AC+A S + VPLYDTLGP A
Sbjct: 82  GEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDA 141

Query: 140 VNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
           V FI++HAE+  +F   + +  LLS   +  S   +R++V           +   TG++ 
Sbjct: 142 VKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPS---VRLIVVVGGADEPLPSLPSGTGVEI 198

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ + L  G+ +     PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G  L   
Sbjct: 199 VTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTK 258

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +       DV++S+LPLAHI +RV +      G +VG+Y GD   L DDL  L+PT+  
Sbjct: 259 FY-----PSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFC 313

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
            VPR++ +I++GI  A++E   L+ R+F+A Y  K   +  G   +  SP+ D L F K+
Sbjct: 314 SVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENG---KNPSPMWDRLVFNKI 370

Query: 378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVG 436
           KA+LGGR+R + SG +PLS +V EFLR+     +++GYG+TET C  + +   D +   G
Sbjct: 371 KAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLS--G 428

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW 494
             G  +   E++L +VPEM Y+  D P P GE+CVRG  +F GYYK+   TRE I  DGW
Sbjct: 429 HVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGW 488

Query: 495 FHTG 498
            HTG
Sbjct: 489 LHTG 492

Length = 651

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  328 bits (843), Expect = e-106
 Identities = 155/441 (35%), Positives = 229/441 (51%), Gaps = 41/441 (9%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   TY+E+YE V  + S L + G   G RV I+ AN P+W  A  A  AL  + VP+
Sbjct: 41  GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQD----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
           Y T  P  + +IL+ +E   +FV++      V  +L  DC     L V++       E K
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLE-DCPKVVDLIVIIDLVREAVEAK 159

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEM----EILPPQPFNICTIMYTSGTSGDPKGVVLTHE 243
            +     +     DE + L  ++       I PP+P ++ TI+YTSGT+G PKGV+LTH 
Sbjct: 160 AL-----VLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHR 214

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE-EYFFRRGASVGYYHGDLN 302
            +   V+G+D  L          D  LSFLPLAHI +R  E       G +V +   D  
Sbjct: 215 NLLAQVAGIDEVLPPI----GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK-EDPR 269

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM---G 359
            L +DL E++PT++ GVPRV+EK+++GI + + +   +RR++F    K     ++    G
Sbjct: 270 TLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG 329

Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTCCAFLVQGYGLT 418
                   +AD L FRK++  LGGR+R  +SGGAPLS E+  F R +     +++GYGLT
Sbjct: 330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIP--ILEGYGLT 387

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           ET    +V  PD   ++GT G      E+++ +              GE+ VRG  +  G
Sbjct: 388 ETSAVVSVNPPDRF-VLGTVGKPLPGIEVKIADD-------------GEILVRGPNVMKG 433

Query: 479 YYKNPDLTRESII-DGWFHTG 498
           YYKNP+ T E+   DGWF TG
Sbjct: 434 YYKNPEATAEAFTEDGWFRTG 454

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  265 bits (680), Expect = 1e-83
 Identities = 134/432 (31%), Positives = 190/432 (43%), Gaps = 121/432 (28%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   T+ E+ E V ++ + L A G +PG RV I   N P+WV A  A  A   + VP+
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           Y T  P  V +IL+ +    VFV+DK       PD      L  ++ +TS T        
Sbjct: 61  YPTSSPEEVAYILNDSGARVVFVEDK-------PD-----DLATLI-YTSGT-------- 99

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            TG                                       +PKGV+LTH  +    + 
Sbjct: 100 -TG---------------------------------------NPKGVMLTHRNLLAQAAA 119

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHGDLNALRDDLME 310
           +   +      ++  D  LSFLPLAH+ ++ + EY     GA V  +      L +DL E
Sbjct: 120 LLEVIP-----LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARV-NFAESPETLLEDLRE 173

Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
           ++PT+   VPRV+EKI+ GI+  +    PL+R++F                         
Sbjct: 174 VRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRW----------------------- 210

Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVC 427
                   A  GGRLR  +SGGAPL  EV EF R   +     +++GYGLTET G  TV 
Sbjct: 211 --------ALGGGRLRFAVSGGAPLPPEVLEFFRALGIP----ILEGYGLTETSGVATVN 258

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
            P ++ + GT G      E+R+ E              GE+ VRG  +  GYYKNP+ T 
Sbjct: 259 RPGDIRI-GTVGKPLPGVEVRIAED-------------GEILVRGPNVMKGYYKNPEATA 304

Query: 488 ESII-DGWFHTG 498
           E++  DGW HTG
Sbjct: 305 EALDEDGWLHTG 316

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  264 bits (676), Expect = 2e-80
 Identities = 140/444 (31%), Positives = 209/444 (47%), Gaps = 48/444 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E++E ++     L   G   G  V IY     +W+ ++    + S++   +Y  LG 
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLS-------PDCRSAQRLRVMVCFTSLTAEQKEMA 190
            A+ + L   E   +    K V  LL        P+         ++   SL A      
Sbjct: 183 DALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-------TIIYLDSLPASVDTEG 235

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIAT 247
            +      +W + +  G           P N   +  IMYTSGT+GDPKGV+ TH ++  
Sbjct: 236 CRL----VAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTA 291

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD- 306
            +  ++  L+        D+ Y S+LPLAHI++  +   F  RGA +G+  G    L D 
Sbjct: 292 GILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDT 349

Query: 307 ------DLMELKPTLLAGVPRVFEKIHEGIKKALEELRP----LRRRIFDALYKYKLAWM 356
                 DL E +P  L GVPR+F+     IKKA+E   P    L+RR+FD  Y+ +L  +
Sbjct: 350 FARPHGDLTEFRPVFLIGVPRIFDT----IKKAVEAKLPPVGSLKRRVFDHAYQSRLRAL 405

Query: 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416
             G      +P  +   F   +A LGGR+R ++SGG PLS   +EF+ V     ++QG+G
Sbjct: 406 KEGKD----TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNV-VFGMVIQGWG 460

Query: 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTL 475
           LTET     +    ++      G +    E++L +  E  Y   D P P GE+ +RG  L
Sbjct: 461 LTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFL 517

Query: 476 FSGYYKNPDLTRESII-DGWFHTG 498
           F GYYK  +LTRE +  DGWFHTG
Sbjct: 518 FKGYYKQEELTREVLDEDGWFHTG 541

Length = 700

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  251 bits (643), Expect = 9e-76
 Identities = 166/506 (32%), Positives = 247/506 (48%), Gaps = 63/506 (12%)

Query: 41  LNTAWD-------IFSMSVQKYPGNRMLGWRPFV--------DGK------FGPYVWKTY 79
           + T W+       +F  S +KY   R+LG R  +        DG+       G Y W TY
Sbjct: 50  VETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITY 109

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            +V+E V    S L A G     RV I+     +W+ A++ C   ++  V +Y +LG  A
Sbjct: 110 GQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEA 169

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG-IKPY 198
           +   L+  E+  V    K++K+L+    +     RV +       +       +      
Sbjct: 170 LCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRV-IYMDDEGVDSDSSLSGSSNWTVS 228

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
           S+ E   LGK N ++   P P +I  IMYTSG++G PKGV++TH  I   V+GV      
Sbjct: 229 SFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGV------ 282

Query: 259 FEDKMTV------DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD------ 306
               MTV      +DVYL++LPLAHIL+   E      GA++GY  G    L D      
Sbjct: 283 ----MTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIK 336

Query: 307 -----DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN---M 358
                D   LKPTL+  VP + +++ +G++K ++    L +++FD  YK +LA +     
Sbjct: 337 KGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWF 396

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G    E   L D L F+K++A LGGR+R ++SGGAPLS + + F+ +   A + QGYGLT
Sbjct: 397 GAWGLEKL-LWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLT 455

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFS 477
           ETC   T    D+   VG  GP      ++L    E GY   D P P GE+ + G ++  
Sbjct: 456 ETCAGATFSEWDDTS-VGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTL 514

Query: 478 GYYKNPDLTRESI-IDG----WFHTG 498
           GY+KN + T E   +D     WF+TG
Sbjct: 515 GYFKNQEKTDEVYKVDERGMRWFYTG 540

Length = 696

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  231 bits (591), Expect = 5e-71
 Identities = 111/429 (25%), Positives = 168/429 (39%), Gaps = 73/429 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++ +ALRA G  PG RV I   N P+WV A+ A        VPL  +L  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ +E   +   D+ + +LL    +    L +++                G   
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD------------DGEGL 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D+ L  G   E    P  P ++  I+YTSGT+G PKGV+LTH  +    +G+     
Sbjct: 109 DLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF- 167

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPT 314
                +T  D  L  LPL               G ++        D   L D + + K T
Sbjct: 168 ----GLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVT 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
           +L GVP +   + +  ++   +L                                     
Sbjct: 224 VLYGVPTLLRLLLKAPEEKKYDLS------------------------------------ 247

Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
                     LRLV+SGG PL  E+            LV GYG TET    T   P +  
Sbjct: 248 ---------SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPE 298

Query: 434 M-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
           +  G+ G       + ++ + E G  P+     GE+C+RG  +  GY  +P+LT E  + 
Sbjct: 299 VKPGSIGR--PLPGVEVKVLDEEG-EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVE 355

Query: 492 DGWF--HTG 498
           DGW    TG
Sbjct: 356 DGWGMYRTG 364

Length = 412

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  224 bits (572), Expect = 4e-67
 Identities = 126/450 (28%), Positives = 195/450 (43%), Gaps = 93/450 (20%)

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
            G++  Y   T+ +V ++  +I +AL++ G EPG R+ I   NC +W+ A  A      +
Sbjct: 1   GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPD--CRSAQRLRVMVCFTS 181
            VPLY TL    + ++L+H++   +FV        +K  +              +     
Sbjct: 58  SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDH-- 115

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF--NICTIMYTSGTSGDPKGVV 239
                           Y WD+ L      E     P P   ++ TI+YTSGT+G PKGV+
Sbjct: 116 ----------------YKWDDLL---AATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVM 156

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY-FFRRGASVGYYH 298
           L+    A    G    +      +T +D  LS+LPLAHI +RVI E      GA V ++ 
Sbjct: 157 LSFGAFAFAAQGTIEII-----GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEV-FFV 210

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGI-----KKALEELRPLRRRIFDALYKYKL 353
             L+    DL   +PT+   VPR++ K  +GI      + L  L  L+  I  +L K   
Sbjct: 211 ESLDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLL--LKIPILSSLVK--- 265

Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLR---VTCCA 409
                                +K+   LG  + RL  SG AP+   +  + R   +    
Sbjct: 266 ---------------------KKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLP--- 301

Query: 410 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 469
            + +GYG+TE    +T+ +P +   +GT G      EL++ E              GE+ 
Sbjct: 302 -ICEGYGMTENFAYSTLNYPGDR-RIGTVGKPIPGVELKISED-------------GEIL 346

Query: 470 VRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
           +R   L SGYYK+P+ T E+   DGW HTG
Sbjct: 347 IRSPGLMSGYYKDPEKTAEAFTEDGWLHTG 376

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  213 bits (545), Expect = 5e-63
 Identities = 115/430 (26%), Positives = 171/430 (39%), Gaps = 72/430 (16%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+     ++ +AL+A G +PG RV I   N P+++ A  A      + VPL   L P
Sbjct: 40  TYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP 99

Query: 138 GAVNFILDHAEIDFVFVQD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             + +IL+ A    +        + E ++        + ++                   
Sbjct: 100 RELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG-------------DADDR 146

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            P + +     G   + +  P  P ++  ++YTSGT+G PKGVVLTH  +   ++     
Sbjct: 147 LPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNL---LANAAGI 203

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +T DDV LS+LPL HI            G  VG     L A           L
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIF-----------GLIVG-----LLAP----------L 237

Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM----NMGYKQREASPLADL 371
           L G   V           L         +   + KYK+  +        +      L D 
Sbjct: 238 LGGGTLVL----------LSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRE------LLDN 281

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430
                    L   LRLV+SGGAPL  E+ E F        +++GYGLTET    T+  PD
Sbjct: 282 PEKDDDD--LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD 339

Query: 431 EMC-MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           ++    G+ G      E+R+  V   G   L     GE+ VRG  +  GY+  P+ T E+
Sbjct: 340 DLLAKPGSVGRPLPGVEVRI--VDPDGGEVLPGEV-GEIWVRGPNVMKGYWNRPEATAEA 396

Query: 490 II-DGWFHTG 498
              DGW  TG
Sbjct: 397 FDEDGWLRTG 406

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  209 bits (533), Expect = 9e-61
 Identities = 133/445 (29%), Positives = 202/445 (45%), Gaps = 54/445 (12%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLYDTLG 136
           TYK+ YE   Q   A    G E    VGI G N P+W   A+ A  A   I V +Y T  
Sbjct: 10  TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGG-IAVGIYTTNS 68

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
           P A  ++ + +E + + V + K  + +         L+ ++ +     ++KE        
Sbjct: 69  PEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQY-REPLKEKE------PN 121

Query: 197 PYSWDEFLHLGK----VNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            YSW EF+ LG+         I+  Q P   CT++YTSGT+G PKGV+L+H+ I      
Sbjct: 122 LYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKA 181

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG--YYHGDLNALRDDLM 309
               +D         +  +S+LPL+HI  ++++ +      SVG   Y    +AL+  L+
Sbjct: 182 AVKHMDLRTVG---QESVVSYLPLSHIAAQILDIWL---PISVGGCVYFAQPDALKGTLV 235

Query: 310 ----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF----DALYKYKLAWMNMGYK 361
               E++PT   GVPRV+EKI E +K    +   L+R+I         +  L  M     
Sbjct: 236 KTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESP 295

Query: 362 QREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLRVTCCAFL------VQG 414
                 LA  L F+KV+  LG  R +   +G AP+S E  EF       FL      ++ 
Sbjct: 296 PPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEF-------FLSLNIPIMEL 348

Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
           YG++ET GP TV  P     + + G      E ++      G         GE+C+ G+ 
Sbjct: 349 YGMSETSGPHTVSNPQNY-RLLSCGKALPGCETKIHNPDADGI--------GEICIWGRH 399

Query: 475 LFSGYYKNPDLTRESI-IDGWFHTG 498
           +F GY    + T E+I  DGW H+G
Sbjct: 400 VFMGYLNMEEKTEEAIDEDGWLHSG 424

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  167 bits (425), Expect = 3e-46
 Identities = 115/465 (24%), Positives = 169/465 (36%), Gaps = 125/465 (26%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D+   + +++P    L    F   K       TY E+ E   +  + L+  G + G RV 
Sbjct: 3   DLLERAARRFPDRPAL---TFFGRKL------TYAELDELSDRFAAYLQQLGVKKGDRVA 53

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   NCPQ+  A         + VP         VN +    E++     D   K     
Sbjct: 54  LMLPNCPQFPIAYFGILKAGAVVVP---------VNPLYTPRELEHQL-NDSGAK----- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
                    V++   S        A+ +G                    +   P ++  +
Sbjct: 99  ---------VLIVAISFED-----ALASGAPLP--------------LPVELSPDDLAVL 130

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
            YT GT+G PKG +LTH  +   V+ V       +D    +D +L+ LPL HI       
Sbjct: 131 QYTGGTTGVPKGAMLTHRNL---VANVQQIAAWVKDLREGEDRFLTALPLFHI------- 180

Query: 286 YFFRRGASVGYYHGDLNAL----RD-DLMEL----KPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +G   G  N L    R  ++++     + T+  GVP                
Sbjct: 181 FGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVP---------------- 224

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                      LY                     LL   + K      LRL ISGGAPL 
Sbjct: 225 ----------TLYNA-------------------LLNHPEFKKYDFSSLRLCISGGAPLP 255

Query: 397 TEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEVP 453
            EV E F   T    LV+GYGLTET   TTV   D     G+ G P+     ++  +E  
Sbjct: 256 VEVAERFEEKTGAP-LVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGN 314

Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           E+   P  +   GE+ VRG  +  GY+  P+ T E + DGW  TG
Sbjct: 315 EL---PPGEV--GELVVRGPQVMKGYWNRPEETAEVLTDGWLRTG 354

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  165 bits (421), Expect = 2e-45
 Identities = 113/451 (25%), Positives = 164/451 (36%), Gaps = 113/451 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ +ALRA G + G RV ++  N  +++EA  A   +  +  P+   L P
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ AE   V V  + V  L      +A   ++    T +       A     + 
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLL------AAILPQLPTVRTVIVEGDGPAA-PLAPEV 145

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
             ++E L        +       +      ++YTSGT+G PKGVVL+H            
Sbjct: 146 GEYEELL----AAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSH---RNLFLHSLA 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGY---YHG---------DL 301
                  K++ DDVYL  +P+ H+             A  + Y     G         D 
Sbjct: 199 VCAWL--KLSRDDVYLVIVPMFHV------------HAWGLPYLALMAGAKQVIPRRFDP 244

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L D +   + T    VP +                                   M  K
Sbjct: 245 ENLLDLIETERVTFFFAVPTI---------------------------------WQMLLK 271

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTET 420
              A    D              LRLVI GGA L    + EF         VQGYG+TET
Sbjct: 272 APRAYF-VDF-----------SSLRLVIYGGAALPPALLREFKEKFGIDL-VQGYGMTET 318

Query: 421 CGPTTVCFPDE--------MCMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGE 467
               +V  P++            G   P  V  E R+     +E+P  G         GE
Sbjct: 319 SPVVSVLPPEDQLPGQWTKRRSAGRPLP-GV--EARIVDDDGDELPPDGGEV------GE 369

Query: 468 VCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           + VRG  L  GY+  P+ T E+I  GW HTG
Sbjct: 370 IIVRGPWLMQGYWNRPEATAETIDGGWLHTG 400

Length = 521

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  146 bits (371), Expect = 1e-38
 Identities = 100/435 (22%), Positives = 167/435 (38%), Gaps = 83/435 (19%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ ++ L++   LR  G + G  V +   N  ++      C A   I      +  P
Sbjct: 12  TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTP 71

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +   L  ++   +F  D    + +    +    +  ++   S        A    ++ 
Sbjct: 72  DELAHQLKISKPKLIFC-DPDELDKVKEAAKELGPVVRIIVLDS--------APDGVLRI 122

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
               E        E E  P    +       ++Y+SGT+G PKGV+L+H+ I   ++ + 
Sbjct: 123 EDLLEPRLGA---EDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNI---IANLS 176

Query: 254 LFLDQF-EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELK 312
              D    +  + +DV L+FLP  H                +                  
Sbjct: 177 QVQDTLKGNPDSSNDVVLTFLPFYHA-------------YGLTTTLA------------- 210

Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY-----KYKLAWMNMGYKQREASP 367
            +LL G   +                    +     +     KYK+  + +        P
Sbjct: 211 -SLLCGATVIIM-----------------PKFDSETFLKLIEKYKVTSLFL------VPP 246

Query: 368 LADLLAFRKV--KARLGGRLRLVISGGAPLSTEVEEFLRV-TCCAFLVQGYGLTETCGPT 424
           +A  LA   +  K  L   LR++ SG APLS E++E LR       + QGYG+TET   T
Sbjct: 247 IAVALAKSPLVDKYDLSS-LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPAT 305

Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           T+  P +    G+ G +    E ++  V E G   L     GE+CV+G  +  GY  NP+
Sbjct: 306 TLTPPGD-EKPGSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPE 362

Query: 485 LTRESII-DGWFHTG 498
            T+E+I  DGW HTG
Sbjct: 363 ATKETIDEDGWLHTG 377

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  144 bits (365), Expect = 6e-37
 Identities = 100/316 (31%), Positives = 157/316 (49%), Gaps = 16/316 (5%)

Query: 187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
           KE A + GI    +D+     K    +I    P  I +I+YTSGTSG PKGV+L+++ + 
Sbjct: 272 KEKAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLY 330

Query: 247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
             V  V L       K      +LS+LP++HI +RVI    F  G ++  +  D+N    
Sbjct: 331 NTV--VPLCKHSIFKKYNPKT-HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
           D+   K  +LAGVP+VF +I+  I   +  L PL+R +   +   + +  N G+ +    
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKF--- 444

Query: 367 PLADLLAF-RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425
            L  +     K+K ++   L ++++GG  LS ++ E L V       QGYGLTET GP  
Sbjct: 445 -LEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF 503

Query: 426 VCFPDEMCMVGTAGPVS--VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP 483
           V   D+       GP+S     ++R  E     Y   D  P GE+ ++  ++FSGY+   
Sbjct: 504 VQHADDNNTESIGGPISPNTKYKVRTWET----YKATDTLPKGELLIKSDSIFSGYFLEK 559

Query: 484 DLTRESII-DGWFHTG 498
           + T+ +   DG+F TG
Sbjct: 560 EQTKNAFTEDGYFKTG 575

Length = 746

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  141 bits (358), Expect = 9e-37
 Identities = 111/441 (25%), Positives = 164/441 (37%), Gaps = 95/441 (21%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V +  +AL A G   G RV I+  N P WV A         + VPL      
Sbjct: 32  TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL   +   +FV        L  D  +  RL  +        E+         K 
Sbjct: 92  DEAAYILARGDAKALFVLG----LFLGVDYSATTRLPALEHVVICETEE---DDPHTEKM 144

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ +FL  G   E       P ++  I++TSGT+G PKG +LTH  + +  +    +L 
Sbjct: 145 KTFTDFLAAGDPAERA-PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF---------FRRGASVGYYHGDLNALRDDL 308
                +T  D YL+  P  H+        F           RGA++       +   D++
Sbjct: 204 -----LTEGDRYLAANPFFHV--------FGYKAGVNAPLMRGATI-LPLPVFDP--DEV 247

Query: 309 MEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
             L    + T+L G P                           +Y   L      +  R 
Sbjct: 248 FRLIETERITVLPGPP--------------------------TMYNSLLQ-----HPDRS 276

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGA----PLSTEVEEFLRVTCCAFLVQGYGLTET 420
           A  L+               LRL ++G A     L    E  L V     ++ GYGL+E 
Sbjct: 277 AEDLSS--------------LRLAVTGAASMPVALLERFESELGV---DIVLTGYGLSEA 319

Query: 421 CGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
            G TT    D+    + GT G      E ++  V E+G   +     GE+ VRG  +  G
Sbjct: 320 SGVTTFNRLDDDRKTVAGTIGTAIAGVENKI--VNELG-EEVPVGEVGELLVRGPNVMKG 376

Query: 479 YYKNPDLTRESI-IDGWFHTG 498
           YY +P+ T  +I  DGW HTG
Sbjct: 377 YYDDPEATAAAIDADGWLHTG 397

Length = 513

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  130 bits (330), Expect = 3e-33
 Identities = 111/431 (25%), Positives = 159/431 (36%), Gaps = 122/431 (28%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ +   ++ +AL   G  PG  V     N  ++V    AC  +  +  P+      
Sbjct: 3   TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + FIL  A                        R RV+                    P
Sbjct: 63  RELGFILRQA------------------------RARVLFV------------------P 80

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFL 256
             +  F +             P ++  ++YTSGT+G+PKGV+ TH T+ A   S V+   
Sbjct: 81  DEFRGFDYAA----------MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL- 129

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
                 +T DDV L   PLAHI                G+ +G         +EL   LL
Sbjct: 130 -----GLTPDDVVLMPSPLAHI---------------TGFLYG---------LEL--PLL 158

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFR 375
            G   V            +   P   R  + + ++ + +  MG     A+P LADLLA  
Sbjct: 159 LGATVVL----------QDRWDP--ARALELIREHGVTFT-MG-----ATPFLADLLAAA 200

Query: 376 KVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EM 432
                    LR+ + GGAP+  E             +V+ YG+TE     TV  PD  + 
Sbjct: 201 DAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAK-VVRAYGMTE-VPLVTVGTPDDPDD 258

Query: 433 CMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
               T G      E+R+      +VP     P ++   GE+ VRG  LF GY   PD T 
Sbjct: 259 KRAATDGRPVPGVEVRIVDDDGNDVP-----PGEE---GELQVRGPQLFLGYLDPPDNTE 310

Query: 488 ESIIDGWFHTG 498
               DGWF TG
Sbjct: 311 AFTDDGWFRTG 321

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  127 bits (321), Expect = 9e-32
 Identities = 83/295 (28%), Positives = 124/295 (42%), Gaps = 65/295 (22%)

Query: 216 PPQPF----NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           PP       ++  + Y+SGT+G  KGV+LTH      ++ V   +         +DV L 
Sbjct: 150 PPVVVIKQDDVAALPYSSGTTGRSKGVMLTH---RNLIANVAQLVAGEGPNFDREDVTLC 206

Query: 272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
            LP+ HI                   +G L  +   L+ L  T++  +PR F+       
Sbjct: 207 VLPMFHI-------------------YG-LTVILLALLRLGATVVV-MPR-FD------- 237

Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR-----LR 386
             LE+          A+ KYK+  +          P+   +    VK  +  +     L+
Sbjct: 238 --LEKF-------LAAIEKYKVTHL----------PVVPPIVLALVKHPIVDKYDLSSLK 278

Query: 387 LVISGGAPLSTEVEE-FLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVY 444
            + SG APL  E+ E F        L QGYG+TE+   TT+C   E     G+ G +   
Sbjct: 279 QIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPN 338

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
            E ++ + PE G   L     GE+ VRG  +  GY  NP+ T E+I  DGW HTG
Sbjct: 339 VEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTG 391

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  122 bits (309), Expect = 3e-31
 Identities = 82/283 (28%), Positives = 116/283 (40%), Gaps = 59/283 (20%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +   I+YTSGT+G PKGVVL+H      ++             T  DV LS LPL H++ 
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSH---RNLLANAQALAQAIGL--TEGDVLLSVLPLFHVVG 55

Query: 281 RVIEEYF-FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                      G +V  Y G    L   + + + + T+L GVP +++ + +         
Sbjct: 56  GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAK--------- 106

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                        Y L+                              LRL+ISGG PLS 
Sbjct: 107 -------AAEDRGYDLS-----------------------------SLRLLISGGEPLSP 130

Query: 398 EV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
           E+ E F        +++GYGLTET   T+     E+   GT G      E+R+  V E G
Sbjct: 131 ELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV--VDEEG 187

Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
             PL     GE+ VRG  +  GY+ NP  T  +   DGW+ TG
Sbjct: 188 -KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTG 229

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  123 bits (312), Expect = 2e-30
 Identities = 106/461 (22%), Positives = 166/461 (36%), Gaps = 113/461 (24%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY + Y  V ++ +AL + G +PG RV     N  + +E   A   +  +   L
Sbjct: 21  GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTL 80

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L P  + +I++HAE   +FV D     LL      A RL  +           +M  
Sbjct: 81  NPRLSPEQIAYIINHAEDKVIFV-DDDFLPLLE---AIAPRLPTVKAVVVYDDA--DMPE 134

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFN-ICTIMYTSGTSGDPKGVVLTHETIA--TF 248
            +    Y+++E L   + +     P    N    + YTSGT+G+PKGVV +H ++   T 
Sbjct: 135 TSLPNVYAYEELL--EEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTL 192

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY----------- 297
            S +   L      ++  D  L  +P+ H+               + Y            
Sbjct: 193 ASALPDSLG-----LSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAKLVLP 236

Query: 298 --HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
             + D  +L D + E K T+ AGVP +                                W
Sbjct: 237 GRYLDPASLLDLIEEEKVTVSAGVPTI--------------------------------W 264

Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQ 413
           + +            L         L    R+V+ G A   + +E+     V     ++ 
Sbjct: 265 LGL------------LNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVE----VIH 308

Query: 414 GYGLTETCGPTTVCFPDEMCMVG-----------TAGPVSVYSELRL-----EEVPEMGY 457
            +G+TET    TV       +V              G      ELR+      E+P  G 
Sbjct: 309 AWGMTETSPLGTVSRLKPH-LVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGK 367

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           +       GE+ VRG  +   YYK+P+ T E   DGWF TG
Sbjct: 368 TV------GELVVRGPWVTGSYYKDPEKTEELTRDGWFRTG 402

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  117 bits (296), Expect = 1e-28
 Identities = 110/434 (25%), Positives = 151/434 (34%), Gaps = 140/434 (32%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++  AL A G  PG RV +      ++V    A      + VPL  +   
Sbjct: 13  TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE+ +  + D +   L+ P          ++ +TS                
Sbjct: 73  ---------AELAY-ILSDSQPSLLVDP---------ALIIYTS---------------- 97

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                           GT+G PKGVVLTH  +A   +     ++
Sbjct: 98  --------------------------------GTTGRPKGVVLTHGNLA---ANARALVE 122

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +  + T  DV L  LPL H+                   HG  NAL          L A
Sbjct: 123 AW--RWTASDVLLHALPLHHV-------------------HGLFNALH-------CPLWA 154

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN-----MG----YKQREASPL 368
           G    F                L R  FD   +  L  +      MG    Y +     L
Sbjct: 155 GASVEF----------------LPR--FDPQERDALRLLPRITVFMGVPTIYTR-----L 191

Query: 369 ADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVC 427
            +   F    A     LRL +SG A L   V E +   T    L++ YG+TET G     
Sbjct: 192 LEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERT-GHTLLERYGMTET-GMALSN 249

Query: 428 FPDEMCMVGTAG-PV-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
             D     GT G P+  V  E+R+  V E G  PL     GE+ VRG  +FS Y+  P+ 
Sbjct: 250 PLDGERRPGTVGLPLPGV--EVRI--VDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEA 305

Query: 486 TRESII-DGWFHTG 498
           T E+   DGWF TG
Sbjct: 306 TAEAFTEDGWFKTG 319

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  114 bits (288), Expect = 3e-28
 Identities = 72/292 (24%), Positives = 108/292 (36%), Gaps = 77/292 (26%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I YTSGT+G PKG +LTH  +      +          +T  D  L  +PL H+   
Sbjct: 4   PALIQYTSGTTGRPKGAMLTHRNVLNNGYSI-----ARRLGLTEGDRTLVPVPLFHV--- 55

Query: 282 VIEEYF---------FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGI 330
                F            GA++       +       +   + T L GVP +F       
Sbjct: 56  -----FGLVLGVLASLTAGATL-VLMEKFDPGAALRLIERERITALHGVPTMF------- 102

Query: 331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-ADLLAFRKVKARLGGRLRLVI 389
              +  L       FD      L     G      +P+  +L+  R+++           
Sbjct: 103 ---IALLEHPDFDKFDL---SSLRTGISG-----GAPVPPELV--RRIREEFP------- 142

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSEL 447
                              A +  GYG+TET G  T    D+      GT G      E+
Sbjct: 143 ------------------MAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEV 184

Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
           ++ + P+ G  P  +   GE+CVRG ++  GYY +P+ T E+I  DGW HTG
Sbjct: 185 KIVD-PDGGEVPPGEV--GEICVRGYSVMKGYYNDPEATAEAIDADGWLHTG 233

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  115 bits (290), Expect = 5e-28
 Identities = 76/296 (25%), Positives = 103/296 (34%), Gaps = 80/296 (27%)

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           +  L P      TI++TSG++G PK VV T         G    L      +T DD +L 
Sbjct: 69  LADLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL-----GLTPDDNWLL 123

Query: 272 FLPLAH-----ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
            LPL H     I+ R         GA V     D  A+ + L     T ++ VP      
Sbjct: 124 SLPLFHVSGLAIVMRS----LLAGGALVLPDKFDAEAIAEALENHGVTHISLVP------ 173

Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
                          +R+ +                  A  L+               LR
Sbjct: 174 ------------TQLQRLLE---------------SLGARWLS--------------SLR 192

Query: 387 LVISGGAPLSTEVEEFLRVTCCAF---LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVS 442
            V+ GGAP+       L          L   YG+TET     T+   D +  +G+ G   
Sbjct: 193 AVLLGGAPIPPS----LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPL 248

Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
              ELR+    +           GE+ VRG +LF GY     LT     DGWFHTG
Sbjct: 249 PGRELRIVNPQD-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTG 293

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  112 bits (284), Expect = 1e-27
 Identities = 78/293 (26%), Positives = 114/293 (38%), Gaps = 83/293 (28%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH  +          +D     ++  DVYL   PL      
Sbjct: 3   PALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVD-----LSPGDVYLLAAPL------ 51

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
                          YH            L P L AG   V           + +  P  
Sbjct: 52  ---------------YHAAGGLF------LLPALAAGGTVVL----------MPKFDP-- 78

Query: 342 RRIFDALYKYKL-------AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
             + D + ++++                     L  L  F +        LRL+I G AP
Sbjct: 79  EAVLDLIERHRVTHTFLVPTMFQR---------LLRLPDFARYD---LSSLRLIIYGAAP 126

Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRL--- 449
           +  E++  +        VQGYG+TET GPTT     E  +  +G+ G      E+R+   
Sbjct: 127 MPAELKRAMIEWFGPVFVQGYGMTET-GPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDE 185

Query: 450 --EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
              E+P  E+G          E+ VRG  + +GY+  P+ T E++ DGW HTG
Sbjct: 186 DGRELPPGEVG----------EIVVRGPAVMAGYWNRPEATAEALRDGWLHTG 228

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  112 bits (283), Expect = 1e-26
 Identities = 93/474 (19%), Positives = 155/474 (32%), Gaps = 96/474 (20%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           LN A +     ++    +       F           TY ++  EV ++ +AL+  G   
Sbjct: 8   LNLALNALDRHLEADRPDDTAII--FDGEDGLFREL-TYGDLRREVARLANALKDLGGVK 64

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
           G RV IY  N P+ V A+ A   +  I   +   L   AV   +       +   D    
Sbjct: 65  GDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADD---- 120

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   + +  + +              V        +DE +        E    +P 
Sbjct: 121 -------GTFRNGKEIA-LLEDADAVLSSVVVVPRLGLWYDEAVE----KASEKFEFEPL 168

Query: 221 N---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                  ++YTSGT+G PKG+V +H                 +      D + +      
Sbjct: 169 PADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLT--AKFHGDLLP--GDRFWNSSDPGW 224

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
           I                G ++   + L            +G   V    ++G      E 
Sbjct: 225 I---------------YGLWYSVFSPL-----------ASGATTVL---YDGRPFYSPE- 254

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLGGRLRLVISGGAPL 395
                R+++AL KYK+            SP  L  L+     +      LR++ S G PL
Sbjct: 255 -----RLWEALEKYKVT-------IFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPL 302

Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
           + E  E F       +++  YG TET        P      G++G            +P 
Sbjct: 303 NPEAFEWFYSALGV-WILDIYGQTETGMGFIAGRPP--VKNGSSG------------LPL 347

Query: 455 MGYSP--LDD--PPC----GEVCVRGKT--LFSGYYKNPDLTRESIIDGWFHTG 498
            GY+   +DD   P     GE+ VR     +   Y+ +P+  +E+    W+ TG
Sbjct: 348 PGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTG 401

Length = 528

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  108 bits (270), Expect = 3e-25
 Identities = 108/430 (25%), Positives = 166/430 (38%), Gaps = 91/430 (21%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TYK+++E V ++ + L      + G R+ I   N  +++  + A   +  I VPL   L 
Sbjct: 29  TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + F L  +    +FV+       LS    S   ++ ++  TSL   + E        
Sbjct: 89  ENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY--VQRVISITSLK--EIEDRKIDNFV 144

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
             +                    F IC   YTSGT+G PKG VLT E +  F + ++   
Sbjct: 145 EKNESA----------------SFIIC---YTSGTTGKPKGAVLTQENM--FWNALN--- 180

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
           + F   +T+ D  +  LPL HI                    G +      L    PTL 
Sbjct: 181 NTFAIDLTMHDRSIVLLPLFHI--------------------GGIG-----LFAF-PTLF 214

Query: 317 AG----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
           AG    VPR FE       KAL  +   +  +   +     A +N            +  
Sbjct: 215 AGGVIIVPRKFEP-----TKALSMIEKHKVTVVMGVPTIHQALIN--------CSKFETT 261

Query: 373 AFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLV-QGYGLTETCGPTTVCFPD 430
             + V        R   +GGAP   E + EF+      FL  QG+G+TET  PT     +
Sbjct: 262 NLQSV--------RWFYNGGAPCPEELMREFIDR---GFLFGQGFGMTET-SPTVFMLSE 309

Query: 431 EMCM--VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
           E     VG+ G   ++ +  L +        + +   GE+ +RG  +   Y+  PD T E
Sbjct: 310 EDARRKVGSIGKPVLFCDYELID-ENKNKVEVGE--VGELLIRGPNVMKEYWNRPDATEE 366

Query: 489 SIIDGWFHTG 498
           +I DGW  TG
Sbjct: 367 TIQDGWLCTG 376

Length = 496

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  105 bits (263), Expect = 2e-24
 Identities = 105/427 (24%), Positives = 153/427 (35%), Gaps = 120/427 (28%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++   L+  G   G RV +Y  N PQ+V A  A      + VP+      
Sbjct: 3   TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  IL+ +                          RV++  + L               
Sbjct: 63  AELEHILNDSG------------------------ARVLIVGSEL--------------- 83

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFL 256
                       +++ ++P          YTSGT+G PKG + TH T +AT  +      
Sbjct: 84  ------------DDVAVIP----------YTSGTTGLPKGCMHTHRTVLATAAASAAWSG 121

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
                 +T D V L+FLPL H                 G     +NA           + 
Sbjct: 122 ------LTPDSVLLAFLPLFH---------------VAGMQGS-MNA----------PIY 149

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFR 375
            G   V               R  R     A+ +Y++  W N+       + + DLLA  
Sbjct: 150 TGATLVLLT------------RWDREAAARAIERYRVTHWTNI------VTMVVDLLAHP 191

Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
           +        L++V  GGA L   V E L+        +GYGLTET   T    PD     
Sbjct: 192 RFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQ 251

Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---- 491
               PV   ++ R+ + PE G   L     GE+ VRG  +F GY+  P+ T ES I    
Sbjct: 252 CLGIPVF-GTDARVID-PETG-EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDG 308

Query: 492 DGWFHTG 498
             +F TG
Sbjct: 309 KRFFRTG 315

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 99.8 bits (249), Expect = 1e-22
 Identities = 87/430 (20%), Positives = 140/430 (32%), Gaps = 114/430 (26%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++  E   +  AL+A G   G RV + G N  + V  + AC  L      L   L  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                 L+  ++  +       ++    D  S  R+            +     +T +  
Sbjct: 61  NERTNQLEDLDVQLLLTDSLLEEKDFQAD--SLDRI------------EAAGRYETSLSA 106

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               +                   I T+M+TSGT+G PK V  T         G    L 
Sbjct: 107 SFNMD------------------QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL- 147

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR---RGASVGYYHGDLNALRDDLMELKPT 314
                 T DD +L  LPL HI    I    FR    GA++       N L + +   + T
Sbjct: 148 ----GFTEDDNWLLSLPLYHISGLSI---LFRWLIEGATL-RIVDKFNQLLEMIANERVT 199

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
            ++ VP                               +L  +                  
Sbjct: 200 HISLVPT------------------------------QLNRL------------------ 211

Query: 375 RKVKARLGG-RLRLVISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVC-FP 429
             +        LR ++ GG+ +   + E      +     +   YG+TETC  + V    
Sbjct: 212 --LDEGGHNENLRKILLGGSAIPAPLIEEAQQYGLP----IYLSYGMTETC--SQVTTAT 263

Query: 430 DEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
            EM       G      E++++   + G+        GE+ V+G  L  GY    +LT  
Sbjct: 264 PEMLHARPDVGRPLAGREIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPA 315

Query: 489 SIIDGWFHTG 498
               GWF+TG
Sbjct: 316 FEQQGWFNTG 325

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 98.8 bits (247), Expect = 3e-22
 Identities = 77/295 (26%), Positives = 102/295 (34%), Gaps = 88/295 (29%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH   A  +    L        +  DDV L+ LPL HI   
Sbjct: 83  TAAILYTSGTTGPPKGVLLTH---AQLLFAARLAARLLG--LRPDDVLLTPLPLFHI--- 134

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
                               NA       +   LL G   V           L       
Sbjct: 135 --------------------NAQ---AYSVYAALLVGATLVL----------LPRFSA-- 159

Query: 342 RRIFDALYKYKLAW-------MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
            R +D + K+             +  KQ  +    D              LR V     P
Sbjct: 160 SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRD------------HPLRFVFGAPLP 207

Query: 395 LSTEVEEFLRVTCCAF---LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-- 449
            +     F       F   LV+GYG+TET  P     P +    G+ G      E+R+  
Sbjct: 208 -AAIWPAFEE----RFGVKLVEGYGMTETGVPIIA--PGDPAPPGSCGRPRPGVEVRIVD 260

Query: 450 ---EEVPEMGYSPLDDPPCGEVCVR---GKTLFSGYYKNPDLTRESIIDGWFHTG 498
               EVP            GE+ VR      +F GYY  P+ T ++  +GWFHTG
Sbjct: 261 EDGREVP-------PGEV-GELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTG 307

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 98.5 bits (246), Expect = 3e-22
 Identities = 101/442 (22%), Positives = 148/442 (33%), Gaps = 117/442 (26%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TY+E+ E   ++   LRA+ G  PG RV +      + V A+ A        VPL D   
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPL-DPAY 59

Query: 137 PGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
           P   + FIL+ A    +         L          L   +   +L             
Sbjct: 60  PAERLAFILEDAGARLLLTDSALASRL--AGLVLPVILLDPLELAALDDAPAPPPPDA-- 115

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
                               P  P ++  ++YTSG++G PKGVV+TH ++   ++ +   
Sbjct: 116 --------------------PSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +  DD  L F  L+   D           ASV               E+   L
Sbjct: 156 YG-----LDPDDRVLQFASLSF--D-----------ASV--------------EEIFGAL 183

Query: 316 LAG-----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LA 369
           LAG      P              +E R     +   + ++ +  +N        +P L 
Sbjct: 184 LAGATLVVPPE-------------DEERDDAALLAALIAEHPVTVLN-------LTPSLL 223

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428
            LLA     A     LRLVI GG  L+   V+ +      A L+  YG TET   T    
Sbjct: 224 ALLAAALPPALAS--LRLVILGGEALTPALVDRWRARGPGARLINLYGPTET---TVWS- 277

Query: 429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---------------GEVCVRGK 473
                   TA  V      R   VP +G  PL +                  GE+ + G 
Sbjct: 278 --------TATLVDPDDAPRESPVP-IGR-PLANTRLYVLDDDLRPVPVGVVGELYIGGP 327

Query: 474 TLFSGYYKNPDLTRESIIDGWF 495
            +  GY   P+LT E  +   F
Sbjct: 328 GVARGYLNRPELTAERFVPDPF 349

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 99.3 bits (248), Expect = 3e-22
 Identities = 132/503 (26%), Positives = 198/503 (39%), Gaps = 116/503 (23%)

Query: 35  PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR 94
             +D    T  D++  +V ++        RP +D  FG     TY E+ ++V +  + LR
Sbjct: 25  HDLDYGDTTLVDLYDNAVARFGD------RPALD-FFGATT--TYAELGKQVRRAAAGLR 75

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT---LGPGAVNFILDH-A 147
           A G  PG RV I   NCPQ + A  A   L  + V   PLY       P       DH A
Sbjct: 76  ALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFE-----DHGA 130

Query: 148 EIDFVF----------VQDKKVKELLSPDCRSA----QRLRVMVCFTSLTAEQKEMAVQT 193
            +  V+           +   ++ ++S +  +A    QRL + +   +L   +  +   T
Sbjct: 131 RVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAAL---T 187

Query: 194 GIKP--YSWDEFLHLGKVNEMEILP---PQPFNICTIMYTSGTSGDPKGVVLTHETI-AT 247
           G  P    W+  +      +   +    P P ++  I+YTSGT+G PKG  LTH  + A 
Sbjct: 188 GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247

Query: 248 FVSG---VDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLN 302
              G   V    D         +  L+ LP+ H   L   +       G  V     D++
Sbjct: 248 AAQGKAWVPGLGDG-------PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDID 300

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
            + D + +  PT L GVP ++EKI    + A E    L                      
Sbjct: 301 LILDAMKKHPPTWLPGVPPLYEKI---AEAAEERGVDLSG-------------------- 337

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETC 421
                                 +R   SG   L    VE + ++T    LV+GYGLTET 
Sbjct: 338 ----------------------VRNAFSGAMALPVSTVELWEKLTG-GLLVEGYGLTET- 373

Query: 422 GPTTVCFPDEMCMVGT---AGPVSV---YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
            P  V  P     +      G V V    +E+R+ + PE     + D   GE+ VRG  +
Sbjct: 374 SPIIVGNP-----MSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQV 427

Query: 476 FSGYYKNPDLTRESIIDGWFHTG 498
           F GY+  P+ T +S +DGWF TG
Sbjct: 428 FKGYWNRPEETAKSFLDGWFRTG 450

Length = 573

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 93.5 bits (233), Expect = 3e-20
 Identities = 109/466 (23%), Positives = 174/466 (37%), Gaps = 105/466 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   +++Y E+ EE  +I++ LRA G +PG  V +       +V A  AC     + VP+
Sbjct: 35  GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMA 190
                         + E +    + + + ELL SP   +   L   +      A  + + 
Sbjct: 95  ----AVPPT-----YDEPNAAVAKLRNIWELLGSPVILTDAALVAALAGLRTRAGLEALR 145

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
           V    +  S      L         P +P +   ++ TSG++G PK VVLTH  I     
Sbjct: 146 VLAIEELRSAPPDAPL--------HPARPDDPALLLLTSGSTGVPKCVVLTHRNI----- 192

Query: 251 GVDLFLDQFEDKMTV-----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
                L +    + V     DDV L+++PL H+               +   H     LR
Sbjct: 193 -----LARSAGTVQVNGFTPDDVSLNWMPLDHV-------------GGIVMLH-----LR 229

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA--WM-NMGYKQ 362
           D            V    ++IH      L +  PLR    D + +Y++   W  N  +  
Sbjct: 230 D------------VYLGCQQIHVPTDYILAD--PLR--WLDLIDRYRVTITWAPNFAFAL 273

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTC-----CAFLVQGYG 416
                L D L   + ++     LR +I+ G  +  +    FL +          +   +G
Sbjct: 274 -----LNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFG 328

Query: 417 LTETCGPTTVC--FPDEMCMVGTA-----GPVSVYSELRLEEVP--EMGY---------- 457
           ++ETC   T    F       G       GP+   +    E V   E+G           
Sbjct: 329 MSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIV 388

Query: 458 ----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
               + L +   G + VRG T+ SGYY+NP+   E+   DGWF TG
Sbjct: 389 DEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTG 434

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 88.8 bits (221), Expect = 2e-19
 Identities = 77/289 (26%), Positives = 110/289 (38%), Gaps = 80/289 (27%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSGT+G PKGV LTH+ +      +         K+T  D  L+ +PL HI      
Sbjct: 7   ILHTSGTTGRPKGVPLTHKNLLASARNI-----AKSHKLTPSDRCLNVMPLFHI------ 55

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG----VPRVFEKIHEGIKKALEELRPL 340
                        HG + +L         TLLAG     P  F                 
Sbjct: 56  -------------HGLIVSLL-------ATLLAGGSVVCPPKFSA--------------- 80

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLG-GRLRLVISGGAPLST 397
             + +D + KY++ W +       A P     LL   K        RLR + S  APL  
Sbjct: 81  -SKFWDDIAKYRVTWYS-------AVPTIHQILLKTAKPNPGKPPPRLRFIRSASAPLPP 132

Query: 398 EV----EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRLEE 451
            V    E+   V     +++ YG+TE         P    +   G+ G  +        E
Sbjct: 133 AVLDRLEKRFGVP----VLEAYGMTEAAHQIA-SNPLPPLVRKPGSVGRPAG------VE 181

Query: 452 VPEMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           V  +     PL     GE+ +RG  + +GY  NP+  RE+  DGWF TG
Sbjct: 182 VAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTG 230

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 89.6 bits (223), Expect = 5e-19
 Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 35/242 (14%)

Query: 42  NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
            T  DI   S ++YP    L         FG   W TY E+   V ++ +AL   G + G
Sbjct: 11  QTIGDILRRSARRYPDKTAL--------VFGDRSW-TYAELDAAVNRVAAALLDLGLKKG 61

Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE 161
            RV   G N   +     AC     + VP+   L    + +ILDH+      V       
Sbjct: 62  DRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA---- 117

Query: 162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF- 220
            L+P   +A  L  +            + +     P  W +F    +   +    P    
Sbjct: 118 -LAPTAEAALALLPVDTLIL------SLVLGGREAPGGWLDFADWAEAGSVA--EPDVEL 168

Query: 221 ---NICTIMYTSGTSGDPKGVVLTHET-IATFVSG-VDLFLDQFEDKMTVDDVYLSFLPL 275
              ++  I+YTSGT   PKG +LTH   IA +VS  V          M+ DD+ L  LPL
Sbjct: 169 ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-------DMSADDIPLHALPL 221

Query: 276 AH 277
            H
Sbjct: 222 YH 223

Length = 523

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 89.4 bits (222), Expect = 6e-19
 Identities = 115/458 (25%), Positives = 167/458 (36%), Gaps = 108/458 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++ + V ++   L A G +PG RVGI+  NC +W+    A   +  I V +      
Sbjct: 47  TWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRA 106

Query: 138 GAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQ----------RLRVMVCF 179
             + + L  + + +V   D          ++ELL P     Q           LR +V  
Sbjct: 107 SELEYALGQSGVRWVICADAFKTSDYHAMLQELL-PGLAEGQPGALACERLPELRGVVSL 165

Query: 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--------PPQPFNICTIMYTSGT 231
               A               W E    G+    E L           P NI    YTSGT
Sbjct: 166 AP--APPPGFLA--------WHELQARGETVSREALAERQASLDRDDPINI---QYTSGT 212

Query: 232 SGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-F 288
           +G PKG  L+H  I    +     L L +  D++ V       +PL H    V+      
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGLTE-HDRLCVP------VPLYHCFGMVLANLGCM 265

Query: 289 RRGASVGY--YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346
             GA + Y     D  A    + E + T L GVP +F          + EL   +R  FD
Sbjct: 266 TVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF----------IAELDHPQRGNFD 315

Query: 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT 406
                                                 LR  I  GAP   EV    RV 
Sbjct: 316 L-----------------------------------SSLRTGIMAGAPCPIEVMR--RVM 338

Query: 407 C---CAFLVQGYGLTETCGPTTVCFPDEMC--MVGTAGPVSVYSELRLEEVPEMGYSPLD 461
                A +   YG+TET   +      +     V T G    + E+++ + P+    P  
Sbjct: 339 DEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRG 397

Query: 462 DPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
           +   GE+C RG ++  GY+ NP+ T ESI  DGW HTG
Sbjct: 398 E--IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTG 433

Length = 558

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 88.5 bits (220), Expect = 1e-18
 Identities = 91/297 (30%), Positives = 126/297 (42%), Gaps = 90/297 (30%)

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VD-----LFLDQFEDKMTVDDVYLSFLPLAHI-- 278
           Y+SGT+G PKGV+LTH+ + T V+  VD     L+          DDV L  LP+ HI  
Sbjct: 186 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-------FHSDDVILCVLPMFHIYS 238

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFE--KIHEGIKKALEE 336
           L+ V+                 L  LR     +   +L  +   FE   + E I++    
Sbjct: 239 LNSVL-----------------LCGLR-----VGAAIL--IMPKFEIGALLELIQRHKVT 274

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLA---DLLAFRKVKARLGGRLRLVISGGA 393
           + P    I  A+ K               SP+    DL + R V            SG A
Sbjct: 275 IAPFVPPIVLAIAK---------------SPVVEKYDLSSIRMVL-----------SGAA 308

Query: 394 PLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV----------GTAGPVS 442
           PL  E+E+  R     A L QGYG+TE  GP        MC+           G+ G V 
Sbjct: 309 PLGKELEDAFRAKLPNAVLGQGYGMTEA-GPVL-----AMCLAFAKEPFPVKSGSCGTVV 362

Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
             +EL++ + PE G S L     GE+C+RG  +  GY  +P+ T  +I  DGW HTG
Sbjct: 363 RNAELKIVD-PETGAS-LPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTG 417

Length = 537

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 87.7 bits (218), Expect = 2e-18
 Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 17/203 (8%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E Y+   ++ SAL   G   G  V +   N P  +EA         + VPL   L  
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ---RLRVMVCFTSLTAEQKEMAVQTG 194
             + FIL+H+E   +FV D++   L             +   +   S  AE  E      
Sbjct: 91  DDIAFILNHSEAKVLFV-DQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEE----- 144

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                +++ L  G  + + I P   ++  ++ YTSGT+G+PKGVV TH     +++ +  
Sbjct: 145 ---GDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHR--GAYLNALGN 199

Query: 255 FLDQFEDKMTVDDVYLSFLPLAH 277
            +   E  M    VYL  LP+ H
Sbjct: 200 VI---EWGMPDRPVYLWTLPMFH 219

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 111/441 (25%), Positives = 165/441 (37%), Gaps = 100/441 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++E+ + V  +  AL   G   G RV I   N  ++VE++ A N L  I VP+   L P
Sbjct: 44  TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F++       V  +       ++   R    L   V     +++            
Sbjct: 104 PEIAFLVSDCGAHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSD------------ 149

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI-----CTIMYTSGTSGDPKGVVLTHETIAT----- 247
              D  L    +         P +I       IMYTSGT+G PKG VLTH  +       
Sbjct: 150 ---DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTC 206

Query: 248 -FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
              +G D             DV    +PL HI             A +G           
Sbjct: 207 LRTNGAD----------INSDVGFVGVPLFHI-------------AGIG----------- 232

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
               + P LL G P V   I+      L    P   ++ D L   K+  + +   Q +A 
Sbjct: 233 ---SMLPGLLLGAPTV---IY-----PLGAFDP--GQLLDVLEAEKVTGIFLVPAQWQA- 278

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF----LVQGYGLTETCG 422
               + A ++ + R    LR++  G AP S  +   LR     F    ++  +G TE   
Sbjct: 279 ----VCAEQQARPR-DLALRVLSWGAAPASDTL---LRQMAATFPEAQILAAFGQTEM-S 329

Query: 423 PTTVCF---PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPP--CGEVCVRGKTLFS 477
           P T C     D +  +G+ G V      R+ +   M     D P    GE+  R  TL S
Sbjct: 330 PVT-CMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMN----DVPVGEVGEIVYRAPTLMS 383

Query: 478 GYYKNPDLTRESIIDGWFHTG 498
           GY+ NP+ T E+   GWFH+G
Sbjct: 384 GYWNNPEATAEAFAGGWFHSG 404

Length = 542

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 81.6 bits (201), Expect = 2e-16
 Identities = 116/443 (26%), Positives = 174/443 (39%), Gaps = 79/443 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYD- 133
           T+   +++V +  + L+  G E G RV I   NCPQ V           I V   PLY  
Sbjct: 51  TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110

Query: 134 -----TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS------L 182
                 L       IL    +D VF +   V+     +     R+   + F        +
Sbjct: 111 RELEYQLHDSGAKVILC---LDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-----LPPQPFN-ICTIMYTSGTSGDPK 236
             +Q  + V+      S  E +HL    E E+     +P  P N +  + YT GT+G PK
Sbjct: 168 QKKQSNLVVKV-----SESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPK 222

Query: 237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296
           GV+LTH+ +   VS   + +    +    ++V L  LP  H+                  
Sbjct: 223 GVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHV------------------ 261

Query: 297 YHGDLNALRDDLMELKPTLLAGVPRV-FEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
            +G    +   +M+    +L  +P+   + + E IKK    L P    I+ AL       
Sbjct: 262 -YGMTAVMNLSIMQGYKMVL--IPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLN----- 313

Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGY 415
                     SPL        +K      +R  ISG APL  EV+E         LV+GY
Sbjct: 314 ----------SPL--------LKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGY 355

Query: 416 GLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
           GLTE+   T   F  E  + G+ G     +E  +  + E G   L     GE+ V+G  +
Sbjct: 356 GLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL-ETG-EALPPGEIGEIVVKGPQI 413

Query: 476 FSGYYKNPDLTRESIIDGWFHTG 498
             GY+  P+ T   + DGW HTG
Sbjct: 414 MKGYWNKPEETAAVLQDGWLHTG 436

Length = 563

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 81.2 bits (201), Expect = 2e-16
 Identities = 89/294 (30%), Positives = 107/294 (36%), Gaps = 75/294 (25%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276
           P P     I+YTSGT+G PKGVVL+   IA     +D   + ++   T DDV +  LPL 
Sbjct: 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAA---DLDALAEAWQ--WTADDVLVHGLPLF 179

Query: 277 HILDRVIEEY-FFRRGASV---------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
           H+   V+      R G             Y            +    TL  GVP V+ +I
Sbjct: 180 HVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPTVWSRI 230

Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
                   E  R LR                                     ARL     
Sbjct: 231 AA----DPEAARALRG------------------------------------ARL----- 245

Query: 387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 446
           LV SG A L   V + L        V+ YG+TET   T     D     G  G      E
Sbjct: 246 LV-SGSAALPVPVFDRLAALTGHRPVERYGMTETL-ITLSTRADGERRPGWVGLPLAGVE 303

Query: 447 LRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
            RL  V E G   P D    GE+ VRG TLF GY   PD T  +   DGWF TG
Sbjct: 304 TRL--VDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTG 355

Length = 471

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 60/202 (29%), Positives = 85/202 (42%), Gaps = 17/202 (8%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY  + E VL + S LR  G   G RV IY     + V AM        + VP+   L  
Sbjct: 27  TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V  IL    +  + V   +  +LL P       LR ++         +      G +P
Sbjct: 87  EQVAHILADCNVR-LLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142

Query: 198 YSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            SW + L LG        PP P    ++  I+YTSG++G PKGVVL+H  +      V  
Sbjct: 143 ASWPKLLALGDA-----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVAT 197

Query: 255 FLDQFEDKMTVDDVYLSFLPLA 276
           +L+        DD  L+ LPL+
Sbjct: 198 YLE-----NRPDDRLLAVLPLS 214

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 109/451 (24%), Positives = 159/451 (35%), Gaps = 88/451 (19%)

Query: 59  RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118
                RP +   FG   W TY E          AL A+G + G RV +   N  ++++  
Sbjct: 32  ERYPDRPLL--VFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVF 88

Query: 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178
             C  L  I VP+   L    +  IL ++    + V+   +  L + D        V   
Sbjct: 89  LGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW-- 146

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP---QPFNICTIMYTSGTSGDP 235
              L      ++V  G   +S      L         P    QP +   I+YTSGT+G  
Sbjct: 147 ---LLDAPASVSVPAG---WSTAPLPPLD-----APAPAAAVQPGDTAAILYTSGTTGPS 195

Query: 236 KGVVLTHETIATFV-----SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 290
           KGV   H   A F      S  DL +         DDV  + LPL H             
Sbjct: 196 KGVCCPH---AQFYWWGRNSAEDLEI-------GADDVLYTTLPLFHT------------ 233

Query: 291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350
                      NAL          LLAG   V E             R      + A+ +
Sbjct: 234 -----------NALN----AFFQALLAGATYVLEP------------RFSASGFWPAVRR 266

Query: 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 410
           +      + Y       +  LL+    ++    R+R+ +  G P +     F R      
Sbjct: 267 HG---ATVTYLLGAMVSI--LLSQPARESDRAHRVRVALGPGVP-AALHAAF-RERFGVD 319

Query: 411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 470
           L+ GYG TET     V    +    G+ G ++   E R+  V E     L D   GE+ +
Sbjct: 320 LLDGYGSTETNFVIAVTHGSQ--RPGSMGRLAPGFEARV--VDEHD-QELPDGEPGELLL 374

Query: 471 RGKTLF---SGYYKNPDLTRESIIDGWFHTG 498
           R    F   +GY+  P+ T E+  + WFHTG
Sbjct: 375 RADEPFAFATGYFGMPEKTVEAWRNLWFHTG 405

Length = 542

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 99/427 (23%), Positives = 157/427 (36%), Gaps = 75/427 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ EEV +  +ALR  G E   RV +   + P++  A      +  + VP+   L P
Sbjct: 32  TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               + L+ +    + +  +++ E+L P  +    LR ++            A       
Sbjct: 92  DDYRYYLNDSRARVLVI-SEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               + +      E+E       ++   +Y+SG++G PKGVV  H  +       + +  
Sbjct: 144 ----QLIA-TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVT---AEAYAK 195

Query: 258 QFEDKMTVDDVYLSF--LPLAHILDRVIEEYF-FRRGASVGYYHGDLNALR--DDLMELK 312
                +T DDV  S   L  A+ L   +  YF    GA+                +   K
Sbjct: 196 NVL-GITEDDVVFSAAKLFFAYGLGNGL--YFPLSVGATTVLMPERPTPDAVFATIERYK 252

Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
           PT+  GVP                           LY                   A +L
Sbjct: 253 PTVFFGVP--------------------------TLY-------------------AAML 267

Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432
           A  +   R    LRL +S G  L  E+    +      ++ G G TE         P   
Sbjct: 268 AAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGA- 326

Query: 433 CMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 491
              GT+G PV  Y E++L  V E G   + D   GE+ VRG +  +GY+   + TRE+ +
Sbjct: 327 VKYGTSGKPVPGY-EVKL--VDEDG-EEVADGEIGELWVRGDSSAAGYWNRREKTRETFV 382

Query: 492 DGWFHTG 498
             W  TG
Sbjct: 383 GEWTRTG 389

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 75.4 bits (185), Expect = 2e-14
 Identities = 85/291 (29%), Positives = 121/291 (41%), Gaps = 66/291 (22%)

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY--LSFLPLA 276
           P ++  + YT GT+G PKG +LTH  + + VS  D++      + T  DV   +  LPL 
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVW--GKPSRATRGDVERVICVLPLF 248

Query: 277 HILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
           HI    VI     RRG  +  +   D+ A+  D+ E + T+  GVP ++         AL
Sbjct: 249 HIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMW--------IAL 300

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
                L +R   +L                              A +G       SGGAP
Sbjct: 301 ANDPSLEKRDLSSL------------------------------ATIG-------SGGAP 323

Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
           L  EV  F        L  G+G+TETC P T   P+     G   P S+   L L  + E
Sbjct: 324 LPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPE-----GPDKPGSI--GLMLPGI-E 375

Query: 455 MGYSPLDDP----PCGEVC---VRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           +    LDDP    P GEV    +RG  +  GY+  P+ + E+ +   F TG
Sbjct: 376 LDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTG 426

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 74/294 (25%), Positives = 110/294 (37%), Gaps = 90/294 (30%)

Query: 225 IMYTSGTSGDPKGVVLTHETI----ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +++TSGT G PKGV+LTH  I      + + ++L         T  DV++   PL H   
Sbjct: 192 VLFTSGTEGLPKGVMLTHNNILASERAYCARLNL---------TWQDVFMMPAPLGH--- 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                       + G+ HG           +    L G   V   I       L  L   
Sbjct: 240 ------------ATGFLHG-----------VTAPFLIGARSVLLDIFTP-DACLALLE-- 273

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP-LADLL-AFRKVKARLGGRLRLVISGGAPLSTE 398
                    + +   M +G     A+P + DLL    K  A L   LR  + GG  +  +
Sbjct: 274 ---------QQRCTCM-LG-----ATPFIYDLLNLLEKQPADLSA-LRFFLCGGTTIPKK 317

Query: 399 VEEFLRVTCC----AFLVQGYGLTETCGPTTVCFPDEMC--MVGTAG------PVSVYSE 446
           V        C      L+  YG TE+  P  V   D+     + T G       + V  E
Sbjct: 318 V-----ARECQQRGIKLLSVYGSTESS-PHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDE 371

Query: 447 LRLEEVPEMGYSPLDDPPC-GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
            R + +P         P C GE   RG  +F GY   P+LT  ++  +GW+++G
Sbjct: 372 AR-KTLP---------PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSG 415

Length = 547

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 73.8 bits (182), Expect = 5e-14
 Identities = 58/177 (32%), Positives = 79/177 (44%), Gaps = 37/177 (20%)

Query: 343 RIFDALYKYKLAWMNMGYKQREASP-----LADLLAFRKVKARLGGRLRLVISGGAPLST 397
            I+D + K+K+  +         +P     LA+  A    K  L   +R V++ GAP   
Sbjct: 246 AIYDLIEKHKVTHLC-------GAPTVLNMLAN--APEADKLPLPRPVR-VMTAGAPPPP 295

Query: 398 EVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELR------- 448
            V    ++    F +   YGLTET GP TVC    E      A P    + L+       
Sbjct: 296 AV--IKKMEELGFEVTHVYGLTETYGPITVCEWKPEW----DALPAEERARLKARQGVRY 349

Query: 449 --LEEV----PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
             LEEV    PE     P D    GE+ +RG T+  GYYKNP+ T E+   GWFH+G
Sbjct: 350 VGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSG 406

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 73.5 bits (181), Expect = 8e-14
 Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 36/223 (16%)

Query: 78  TYKEVYEEVLQIVSAL-RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +Y+E+ EE  ++   L +  G   G RV +Y  N PQ+V A  A    + + VP+     
Sbjct: 37  SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96

Query: 137 PGAVNFILDHAEIDFVFV-QD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
              +   +  +      V  +   KV   +        RLR ++           +  + 
Sbjct: 97  EEELAHYVTDSGARVAIVGSELAPKVAPAVG-----NLRLRHVIV----AQYSDYLPAEP 147

Query: 194 GIKPYSW-------DEFLHLGKVNEMEIL-----PP----QPFNICTIMYTSGTSGDPKG 237
            I   +W             G V   E L     PP     P ++  + YTSGT+G PKG
Sbjct: 148 EIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKG 207

Query: 238 VVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            + TH T+ A  V  V           T + V L+ LPL H+ 
Sbjct: 208 CMHTHRTVMANAVGSVLWS------NSTPESVVLAVLPLFHVT 244

Length = 546

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 73/295 (24%), Positives = 106/295 (35%), Gaps = 83/295 (28%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDD------VYLSFL 273
              + +TSGT+G PK V+ TH      +     +LD   D +  T+ D       + S  
Sbjct: 83  PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142

Query: 274 -PLAHILDRVIEEYFFRRGASVGYYHGD-LNALR--DDLMELKPTLLAGVPRVFEKIHEG 329
            P                GA+V  YHG   +A R  + L     T     P  +      
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY------ 183

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
                   R L ++                          DL ++          LR V+
Sbjct: 184 --------RMLLQQ--------------------------DLSSYDF------SHLRHVV 203

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
           S G PL+ EV ++ R      +  GYG TET G     FP      G+ G P   Y   R
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTET-GLLVANFPGMEVKPGSMGRPAPGY---R 259

Query: 449 LEEVPEMG-YSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTG 498
           +  + + G   P  +   G++ VR K     LF GY K+P+ T  +I   W+ TG
Sbjct: 260 VAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTG 312

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 35/202 (17%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E++E V+ +   L A G + G RV +   N  + +  + A   L  + V L   L 
Sbjct: 28  VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + + LD AE+  +   D    + L P           V F  L    KE       +
Sbjct: 88  REELLWQLDDAEVKCLITDDDFEAK-LIPGIS--------VKFAELMNGPKE--EAEIQE 136

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
            +  DE                   + TIMYTSGT+G PKGV+ T+     + S V   L
Sbjct: 137 EFDLDE-------------------VATIMYTSGTTGKPKGVIQTYGN--HWWSAVGSAL 175

Query: 257 DQFEDKMTVDDVYLSFLPLAHI 278
           +     +T DD +L+ +P+ HI
Sbjct: 176 NL---GLTEDDCWLAAVPIFHI 194

Length = 483

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 68/293 (23%), Positives = 106/293 (36%), Gaps = 73/293 (24%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--- 278
           +    +T GT+G PK    +H           L        +   DV L+ LPL H+   
Sbjct: 4   LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSG-----LGPGDVLLNGLPLFHVGGA 58

Query: 279 LDRVIEEYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHE 328
           +   +      RGA+V      G+ +    A+  +  ++    + TLL+ VP V      
Sbjct: 59  IVTGLAP--LARGATVVLPTPSGFRN---PAVVANFWKIVERYRVTLLSAVPTV------ 107

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                                                  LA LL      A +   LR  
Sbjct: 108 ---------------------------------------LAALLQVPLGDADIS-SLRYA 127

Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 447
           ++G APL  EV   F  VT    +V+GYG+TE  G + +         G+ G    Y+ +
Sbjct: 128 LTGAAPLPVEVARRFEAVTGVP-VVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRV 186

Query: 448 RLEEVPEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           R+ ++   G    D  P   G + +RG  +F GY  +       + DGW +TG
Sbjct: 187 RVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGWLNTG 239

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 71.5 bits (176), Expect = 2e-13
 Identities = 65/289 (22%), Positives = 110/289 (38%), Gaps = 70/289 (24%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSG++G PKGV ++H  +A+F+  +    D     +T  DV+ +  P          
Sbjct: 102 ILFTSGSTGKPKGVQISHANLASFLDWMVEDFD-----LTEGDVFSNQAPF--------- 147

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
             F            DL+     + +L P L +G     +P+      E I   L     
Sbjct: 148 -SF------------DLS-----VFDLFPALASGATLYVIPK------EQIADPLA---- 179

Query: 340 LRRRIFDALYKYKLA-WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
               +F+ L ++ L  W+++       S  + LL  R++       LR  +  G  L  +
Sbjct: 180 ----LFEFLKEHGLTVWVSV------PSFASLLLLSRELNPESLPSLRTFLFCGEVLPKK 229

Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTT-VCFPDEMCMVGTAGPV---SVYSELRLEEVP 453
             +   R    A ++  YG TE     T      E   +    P+        LR   + 
Sbjct: 230 LAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEP--LSRNEPLPIGYPKPGLRALILD 287

Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTG 498
           E G  P+     GE+ + G  +  GY  NP+ T ++        W+ TG
Sbjct: 288 EDG-RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTG 335

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 71.5 bits (176), Expect = 3e-13
 Identities = 80/324 (24%), Positives = 124/324 (38%), Gaps = 110/324 (33%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I ++SG++G+PKGV+LTH+ + T +  +         ++T +DV+LS++PL H       
Sbjct: 111 IQFSSGSTGEPKGVILTHKNLLTNIEAIIEAA-----EITSEDVFLSWMPLTH------- 158

Query: 285 EYFFRRGASVGYYHGDLNALRDDLME-LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343
                    +G     L      + + L PT      R+F +            RPL   
Sbjct: 159 --------DMGLIGFHLTPTALGINQYLMPT------RLFIR------------RPL--L 190

Query: 344 IFDALYKYKLAWM---NMGYKQ------REASPLADLLAFRKVKARLGGRLRLVISGGAP 394
             D   +++   +   N GYK        E     DL + R           L+ +G  P
Sbjct: 191 WLDKASQHRATILSSPNFGYKYLLKHFKTEKIIDWDLSSVR-----------LIFNGAEP 239

Query: 395 LSTEV-EEF--------LRVTCCAFLVQGYGLTETCGPTTVCFP---------------- 429
           +S ++ EEF        LR      +   YGL E      V FP                
Sbjct: 240 ISADLCEEFLEKMAPFGLRPNA---MYPVYGLAEAT--LAVSFPKPGEPFKTVCLDRNHL 294

Query: 430 --------------DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
                         D +  V    P+    E+R+  V + G   L D   G + ++G  +
Sbjct: 295 KVGVKIIEIDPKNSDAISFVEVGSPID-GCEIRI--VDDAGEV-LPDRTIGHIQIKGDNV 350

Query: 476 FSGYYKNPDLTRESII-DGWFHTG 498
            SGYY NP+ T++SI  DGW  TG
Sbjct: 351 TSGYYNNPEATKKSITPDGWLKTG 374

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 71.1 bits (175), Expect = 4e-13
 Identities = 71/300 (23%), Positives = 114/300 (38%), Gaps = 94/300 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +    + +        ++     V + +LP  H       
Sbjct: 169 YLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEE---PPVLVDWLPWNHTFGGNHN 225

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + V+      +   G  V G +   L  LR    E+ PT+   VP+ FE + +    AL
Sbjct: 226 FNMVLYNGGTLYIDDGKPVPGLFEETLRNLR----EVSPTVYFNVPKGFEMLVD----AL 277

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
           E    LRRR F                                      RLRL+   GA 
Sbjct: 278 ERDAALRRRFF-------------------------------------KRLRLLFYAGAA 300

Query: 395 LSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGPVSV 443
           L  +V + L          R+   +    G G TET    T   +P +      +G + +
Sbjct: 301 LPQDVWDRLQALAVRTTGERIPMTS----GLGATETAPTATFVHWPTDR-----SGVIGL 351

Query: 444 YS---ELRLEEVPEMG-YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
            +   EL+L  VP  G           EV V+G  +  GY+++P+LT E+   +G++  G
Sbjct: 352 PAPGTELKL--VPNGGKL---------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIG 400

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 75/290 (25%), Positives = 100/290 (34%), Gaps = 76/290 (26%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLS----FL- 273
           I   +YTSGT+G PKGV+  H    TF        + F  +   +   D   S    F  
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFA-------EAFARELLGLQPGDRIFSSSKLFFA 145

Query: 274 -PLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             L + L       F    GAS     G     A+ D L   +PT+L GVP ++      
Sbjct: 146 YGLGNSL------LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY------ 193

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
                                                    LL      A L   +RL +
Sbjct: 194 ---------------------------------------RALLESGAGSAPLFRSVRLCV 214

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
           S G  L   + E         ++ G G TE         P      GT G PV  Y E R
Sbjct: 215 SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAA-RPGTTGRPVPGY-EAR 272

Query: 449 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           L  V E G         G++ VRG +L  GY+  P+ T+ ++ DGW  TG
Sbjct: 273 L--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTG 319

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 70.4 bits (173), Expect = 6e-13
 Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 51/165 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+  EV ++ S L A G   G RVGIY    P+ V A+ A   +  I VP++   GP
Sbjct: 9   TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGP 68

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            AV   L  AE   +   D                                         
Sbjct: 69  DAVATRLQDAEAKVLITADG---------------------------------------- 88

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                FL  GK  +++  P        I+YTSGT+G PKG V TH
Sbjct: 89  -----FLRRGKRVDLKDDP------AMIIYTSGTTGKPKGTVHTH 122

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 70.5 bits (173), Expect = 7e-13
 Identities = 43/128 (33%), Positives = 54/128 (42%), Gaps = 24/128 (18%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-------DEMCMVGT 437
           LR VI  GAP+    ++         LVQ +GL E  G  TV  P            +GT
Sbjct: 282 LRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGT 341

Query: 438 AGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESI 490
            G           E   M     DD     PP   GE+CV G  +F+GYY NP+   ++ 
Sbjct: 342 CG----------FERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF 391

Query: 491 IDGWFHTG 498
            DGWF TG
Sbjct: 392 RDGWFRTG 399

Length = 528

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 70.4 bits (172), Expect = 7e-13
 Identities = 86/432 (19%), Positives = 137/432 (31%), Gaps = 95/432 (21%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   L + G  PG  V I      + V A+ A        VPL      
Sbjct: 254 TYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPA 313

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ +    +  Q       L  D      L                A+   +  
Sbjct: 314 ERLAYILEDSRPTLLLTQ-----AHLRVDDVGLPGL----------------ALDDALSE 352

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               + +    + +          +  I+YTSG++G PKGV + H  +A  ++       
Sbjct: 353 IPDTDPIPQALLGD---------ALAYIIYTSGSTGQPKGVRIEHRALANLLNDAG---A 400

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR--GASV----GYYHGDLNALRDDLMEL 311
           +F   +  DD  L+   L+   D  + E F     GA +         D  AL + L   
Sbjct: 401 RFG--LDADDRVLALASLS--FDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQ 456

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
             T+L  VP                                   + +         L   
Sbjct: 457 GITVLLLVP---------------------------------LLLRL---------LLLA 474

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPTTVCFP 429
                + +    RLR ++SGG  L   + + L         L+  YG TE     T+  P
Sbjct: 475 ALAPDLISPC-ERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTE----ATLDAP 529

Query: 430 DEMCMVGTAGPVSVYSELRLEEVPEM--GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
                      V +   +   ++  +  G  PL     GE+ + G  L  GY   PDLT 
Sbjct: 530 SFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTA 589

Query: 488 ES-IIDGWFHTG 498
           E  I    + TG
Sbjct: 590 ERFIALRLYRTG 601

Length = 642

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 81/289 (28%), Positives = 122/289 (42%), Gaps = 54/289 (18%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD--VYLSFL 273
              P ++  + YT GT+G  KG  L H  I   V  ++ +L    +K    D   ++  L
Sbjct: 200 KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL 259

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PL HI    +          +G   G  N            +L   PR        I   
Sbjct: 260 PLYHIFALTV-------CGLLGMRTGGRN------------ILIPNPR-------DIPGF 293

Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
           ++EL+  +  IF A+     A +N        +P  D L F K+    GG       G A
Sbjct: 294 IKELKKYQVHIFPAVNTLYNALLN--------NPDFDKLDFSKLIVANGG-------GMA 338

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-PV-SVYSELRLE 450
                 E +L +T C  + +GYGL+ET  P   C P D     GT G P+ S    +R +
Sbjct: 339 VQRPVAERWLEMTGCP-ITEGYGLSET-SPVATCNPVDATEFSGTIGLPLPSTEVSIRDD 396

Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
           +  ++   PL +P  GE+C+RG  + +GY+  PD T + +  DG+F TG
Sbjct: 397 DGNDL---PLGEP--GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTG 440

Length = 557

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 112/436 (25%), Positives = 165/436 (37%), Gaps = 83/436 (19%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+   V ++   L   G   G  V     N  ++     AC+ +  +  PL      
Sbjct: 57  TYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRE 116

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++F+L HAE   V V  K  +         A+RLR            + + V  G   
Sbjct: 117 RELSFMLKHAESK-VLVVPKTFRGFDHA--AMARRLR------PELPALRHVVVVGGDGA 167

Query: 198 YSWDEFLHLGKVNEME-----ILP---PQPFNICTIMYTSGTSGDPKGVVLTHET----I 245
            S++  L +    E E     IL    P P ++  ++YTSGT+G+PKGV+ T  T    I
Sbjct: 168 DSFEALL-ITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANI 226

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
             +   + L           DDV L   P+AH                 G+ +G      
Sbjct: 227 VPYAERLGL---------GADDVILMASPMAHQ---------------TGFMYG------ 256

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 365
              + + P +L G   V + I +   +A E +R              + +  M      +
Sbjct: 257 ---LMM-PVML-GATAVLQDIWD-PARAAELIRTEG-----------VTFT-MA-----S 293

Query: 366 SP-LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT 424
           +P L DL    K   R    LR  +  GAP+   + E  R    A +V  +G+TE    T
Sbjct: 294 TPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVT 353

Query: 425 TVCF--PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
                 PDE     T G      E+R   V +   +PL     G + VRG + F GY K 
Sbjct: 354 LTKLDDPDER-ASTTDGCPLPGVEVR---VVDADGAPLPAGQIGRLQVRGCSNFGGYLKR 409

Query: 483 PDLTRESIIDGWFHTG 498
           P L      DGWF TG
Sbjct: 410 PQLNGTD-ADGWFDTG 424

Length = 547

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 68.7 bits (169), Expect = 2e-12
 Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 34/191 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT 134
           TY+E  EEV  +   L A G E G RVGI+  N P+WV    A   +  I V   P Y  
Sbjct: 45  TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104

Query: 135 LGPGAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQ 186
                + + L+ +    +   D          + EL  P+  + +  +       L + +
Sbjct: 105 ---SELEYALNQSGCKALIAADGFKDSDYVAMLYELA-PELATCEPGQ-------LQSAR 153

Query: 187 K---EMAVQTGIKP----YSWDEFLHLGKVNEMEILPP-----QPFNICTIMYTSGTSGD 234
                  +  G +      ++DE L LG+  +   L        P +   I YTSGT+G 
Sbjct: 154 LPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213

Query: 235 PKGVVLTHETI 245
           PKG  LTH  I
Sbjct: 214 PKGATLTHRNI 224

Length = 559

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 67.5 bits (166), Expect = 4e-12
 Identities = 68/296 (22%), Positives = 101/296 (34%), Gaps = 83/296 (28%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P ++  ++YTSG++G PKGV++ H  +   ++      +++   +T  D  L F   + 
Sbjct: 91  DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAW---LQERYG--LTAGDRVLQFASFSF 145

Query: 278 ILDRVIEEYF--FRRGASVGYY------HGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             D  + E F     GA++           D  AL + L E + T+L  VP +   +   
Sbjct: 146 --DASVWEIFPPLLSGATL--VLAPPEVLRDPEALAELLREHRITVLHLVPSLLRAL--- 198

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
               L+ L P                                             LRLVI
Sbjct: 199 ----LDALEPAALP----------------------------------------SLRLVI 214

Query: 390 SGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVC------FPDEMCMVGTAGP-V 441
            GG  L  E V  +  +   A LV  YG TET    T               +G      
Sbjct: 215 VGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANT 274

Query: 442 SVY--SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF 495
            VY   E  L  VP            GE+ + G  +  GY   P+LT E  +   F
Sbjct: 275 RVYVLDE-DLRPVPVGV--------PGELYIGGAGVARGYLNRPELTAERFVPDPF 321

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 81/287 (28%), Positives = 120/287 (41%), Gaps = 57/287 (19%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           PQ  ++  + YT GT+G  KG +LTH   +A  +    L      +     ++ ++ LPL
Sbjct: 204 PQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC---EILIAPLPL 260

Query: 276 AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335
            HI       Y F          G+ N L  +            PR    +       ++
Sbjct: 261 YHI-------YAFTFHCMAMMLIGNHNILISN------------PRDLPAM-------VK 294

Query: 336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
           EL   +   F  L    +A  N      EA        FRK+       L+L +SGG  L
Sbjct: 295 ELGKWKFSGFVGLNTLFVALCN-----NEA--------FRKLDF---SALKLTLSGGMAL 338

Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEV 452
                E +  VT CA   +GYG+TET  P     P +   VGT G PV S   ++  ++ 
Sbjct: 339 QLATAERWKEVTGCAIC-EGYGMTET-SPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDG 396

Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
            E+   PL +   GE+CV+G  +  GY++ P+ T E +  DGW  TG
Sbjct: 397 NEL---PLGEV--GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTG 438

Length = 562

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 64.6 bits (158), Expect = 4e-11
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 15/94 (15%)

Query: 411 LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---- 465
           + Q YG+TET     T+   D +  +G+AG      EL++E+         D        
Sbjct: 281 VYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK---------DGVVVPPFE 331

Query: 466 -GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
            GE+ V+G  +  GY    D TRE+  DGWF TG
Sbjct: 332 EGEIVVKGPNVTKGYLNREDATRETFQDGWFKTG 365

Length = 483

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 65.0 bits (159), Expect = 4e-11
 Identities = 36/101 (35%), Positives = 43/101 (42%), Gaps = 23/101 (22%)

Query: 415 YGLTETCGPTTVC--------FPDE-----MCMVGTAGP----VSVYSELRLEEVPEMGY 457
           YGLTET GP TVC         P +         G   P    V+V     ++ VP    
Sbjct: 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPA--- 383

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
              D    GE+  RG  +  GY KNP  T E+   GWFHTG
Sbjct: 384 ---DGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTG 421

Length = 545

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 74/284 (26%), Positives = 103/284 (36%), Gaps = 65/284 (22%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG +  H  +   + GV+L+ +         DV+ +    A I      
Sbjct: 93  LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELA---PRPGDVFWTPADWAWI------ 143

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                              L D L+   P L  GVP V                  R + 
Sbjct: 144 -----------------GGLLDVLL---PALYFGVPVV----------------AYRMQR 167

Query: 345 FDALYKYKLAWMNMGYKQREA--SPLADLLAFRKV---KARLGGRLRLVISGGAPLSTEV 399
           FD   +   A M   Y    A   P A L   R+V   +AR   RLR V SGG  L  E+
Sbjct: 168 FDP--ERAFALMRR-YGVTNAFLPPTA-LKMMRRVGSERARYDLRLRAVASGGESLGEEL 223

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVC---FPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
            E+ R      + + YG TE       C    P     +G   P        +  V + G
Sbjct: 224 LEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGH-----EVAVVDDAG 278

Query: 457 YSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTG 498
             P+     GE+ V+     +F GY+ NP+ T       W  TG
Sbjct: 279 -RPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTG 321

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 65.0 bits (159), Expect = 4e-11
 Identities = 75/291 (25%), Positives = 101/291 (34%), Gaps = 81/291 (27%)

Query: 228 TSGTSGDPKGVVLTH--ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-VIE 284
           T GT+G PK    TH  E    ++  + L L          D     LPL H+    V  
Sbjct: 221 TGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP-------GDTVFCGLPLFHVNALLVTG 273

Query: 285 EYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKAL 334
                RGA V      GY       +  +  ++    +   L+GVP V            
Sbjct: 274 LAPLARGAHVVLATPQGYRG---PGVIANFWKIVERYRINFLSGVPTV------------ 318

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
                                             A LL    V       LR  + G AP
Sbjct: 319 ---------------------------------YAALLQ-VPVDGHDISSLRYALCGAAP 344

Query: 395 LSTEV-EEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
           L  EV   F   T    +V+GYGLTE TC  ++V  PD    +G+ G    Y  +R+  +
Sbjct: 345 LPVEVFRRFEAATGVR-IVEGYGLTEATCV-SSVNPPDGERRIGSVGLRLPYQRVRVVIL 402

Query: 453 PEMGYSPLDDPP--CGEVCVRGKTLFSGYY---KNPDLTRESIIDGWFHTG 498
            + G    D      G +C+ G  +FSGY     N  L  E   DGW +TG
Sbjct: 403 DDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLE---DGWLNTG 450

Length = 632

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 63.8 bits (156), Expect = 6e-11
 Identities = 67/285 (23%), Positives = 94/285 (32%), Gaps = 81/285 (28%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P +   ++YTSG++G PKGVV+TH  I  F+                 D  L F  +A 
Sbjct: 97  SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL---RAEGAILGI--RPGDRVLQFASIA- 150

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG---VPRVFEKIHEGIKKAL 334
             D  I E F                          TLLAG   V    E   E + + L
Sbjct: 151 -FDVSILEIFT-------------------------TLLAGGTLVIPPEELRLEDLAEFL 184

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFRKVKARLGGRLRLVISGGA 393
             LR                  ++       +P L  LL    V       LR +I GG 
Sbjct: 185 NRLRV--------------TVAHL-------TPSLLALLDPEDVP-----SLRTLILGGE 218

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETC--GPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
                + +         L+  YG TE       +   P +   +G   P+  Y+   L  
Sbjct: 219 ACPQALVDRWSKPRR--LLNTYGPTEATVTATASRLTPGKPVNIG--RPLPNYTCWVL-- 272

Query: 452 VPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII 491
                  P  +P       GE+C+ G  +  GY   P+LT E  I
Sbjct: 273 ------DPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFI 311

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 63.7 bits (156), Expect = 9e-11
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 35/199 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   LRA G  PG  V +     P+ V A+ A        VPL      
Sbjct: 14  TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F+L+ +    +   +                   +V        +           
Sbjct: 74  ERLAFMLEDSGARVLLTDESLAPLA-------RADQLPLVILEEELDAEDAGPPA----- 121

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                  ++  +MYTSG++G PKGV + H  +   V   + ++ 
Sbjct: 122 -----------------PAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTN-YIA 163

Query: 258 QFEDKMTVDDVYLSFLPLA 276
                   DD +L   PL+
Sbjct: 164 LDP-----DDRFLQLSPLS 177

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 48/212 (22%), Positives = 73/212 (34%), Gaps = 28/212 (13%)

Query: 75  VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT 134
             +T+ E Y    ++ SAL   G   G  V +   N P  VEA         +   L   
Sbjct: 42  RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTR 101

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK------- 187
           L   ++ F+L H E   + V D +  E+           + +V                 
Sbjct: 102 LDAASIAFMLRHGEAKVLIV-DTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL 160

Query: 188 --EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
             E  + +G   ++W              LP   ++   + YTSGT+G+PKGVV  H   
Sbjct: 161 DYEAFLASGDPDFAW-------------TLPADEWDAIALNYTSGTTGNPKGVVYHHRGA 207

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                      +     M    VYL  LP+ H
Sbjct: 208 YLNALS-----NILAWGMPKHPVYLWTLPMFH 234

Length = 545

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 77/305 (25%), Positives = 118/305 (38%), Gaps = 60/305 (19%)

Query: 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED 261
           E L LG+ + M  L  +P +I  + YT GT+G  KG +LTH  +   +     +L     
Sbjct: 190 EALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK 249

Query: 262 KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR 321
                +V ++ LPL HI         F +        G  N L  +            PR
Sbjct: 250 LEEGCEVVITALPLYHIFALTANGLVFMK-------IGGCNHLISN------------PR 290

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
                   +   ++EL+  R   F  +        N  +     +P  D + F  +K  L
Sbjct: 291 -------DMPGFVKELKKTRFTAFTGV--------NTLFNGLLNTPGFDQIDFSSLKMTL 335

Query: 382 GGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 441
           GG       G A   +  E + +VT    LV+ YGLTET  P     P  + +    G +
Sbjct: 336 GG-------GMAVQRSVAERWKQVTGLT-LVEAYGLTET-SPAACINP--LTLKEYNGSI 384

Query: 442 SVYSELRLEEVPEMGYSPLDDP-------PCGEVCVRGKTLFSGYYKNPDLTRESI-IDG 493
            +        +P       DD          GE+C++G  +  GY+K P+ T + +  DG
Sbjct: 385 GL-------PIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADG 437

Query: 494 WFHTG 498
           W HTG
Sbjct: 438 WLHTG 442

Length = 560

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 75/360 (20%), Positives = 138/360 (38%), Gaps = 35/360 (9%)

Query: 42  NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
            +  +++  SV ++   R LG       + G   W TY  V     ++ S L A G  PG
Sbjct: 427 RSLGEMWERSVTRHSTFRCLG----QTSESGESEWLTYGTVDARARELGSGLLALGVRPG 482

Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG-AVNFILDHAEIDFVFVQDKKVK 160
             +G+        V    AC       +PL   +G G  +  ++D  +I  VF     V 
Sbjct: 483 DVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMRTLIDEHKIKVVFADRNSVA 539

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ-TGIKPYSWDEFLHLGKVNEMEILPPQP 219
            +L+  CRS ++L  +V   S   E      +   I    ++     G+   +  +P + 
Sbjct: 540 AILT--CRS-RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR---LCPVPLKE 593

Query: 220 FNICTIMYT-------SGTSGDPKGVVLTHETIATFVS---GVDLFLDQFEDKMTVDDVY 269
                 ++T       S +      V +TH  +   +S      +    F+  + V    
Sbjct: 594 HVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMV---- 649

Query: 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             F P A + +RV     F  G++V     D   L+   ++ +PT+L   P +F      
Sbjct: 650 -HFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQ 706

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
           + +A E    +   +F+  ++ +   +N+    R  S L   + FR  +  LGG +  ++
Sbjct: 707 LSRANERYSAVYSWLFERAFQLRSRLINI---HRRDSSLLRFIFFRATQELLGGCVEKIV 763

Length = 1452

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 102/495 (20%), Positives = 154/495 (31%), Gaps = 157/495 (31%)

Query: 57  GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116
           GNR      FVDG                VL + + L   G   G  V I   N   ++E
Sbjct: 29  GNRRRTGHEFVDG----------------VLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72

Query: 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF--------VFVQDKKVK----ELLS 164
            + A      I  PL         N+     E           + V D+       EL +
Sbjct: 73  WLLAVACAGGIVAPL---------NYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQN 123

Query: 165 PDCRSAQRLRVMVCFTS-------LTAEQKEMAVQTGIKP----YSWDEFLHLGKVNEME 213
               S    +V +   S        +    EM  Q  +      Y+W             
Sbjct: 124 DRLPSL-MWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAW------------- 169

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-----DDV 268
                P +   I +TSGT+G PKGV ++H  +            Q   K+ +     DDV
Sbjct: 170 ----APDDAVLICFTSGTTGRPKGVTISHSALIV----------QSLAKIAIVGYGEDDV 215

Query: 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
           YL   PL HI                    G L++    LM        G   V      
Sbjct: 216 YLHTAPLCHI--------------------GGLSSALAMLM-------VGACHVL----- 243

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-------ADLLAF-RKVKAR 380
            + K            FDA    K A   +  KQ   + +       ADL++  RK    
Sbjct: 244 -LPK------------FDA----KAALQAI--KQHNVTSMITVPAMMADLISLTRKSMTW 284

Query: 381 LGGR-LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
                +R +++GG  LS+  + +  ++   A L   YG+TE C   T     +  +    
Sbjct: 285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK 344

Query: 439 GPVSVYSELRLEEVP--------------EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
             +   ++ +   V               E+     +    G +  RG  +  GY+    
Sbjct: 345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNS 404

Query: 485 LTRESII-DGWFHTG 498
            T   +  DGW  TG
Sbjct: 405 ETASVLSNDGWLDTG 419

Length = 563

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 62.2 bits (152), Expect = 3e-10
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 25/127 (19%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTA 438
            LR++  GGAPLS E+   +       L Q +G+ E  G   V +     P ++ M  T 
Sbjct: 256 SLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--G--LVNYTRLDDPPDVIM-RTQ 310

Query: 439 G-PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
           G P+S   E+R+     E VP            GE+  RG     GYY+ P+    +   
Sbjct: 311 GRPISPADEIRIVDDQGEPVPPGEV--------GELLTRGPYTIRGYYRAPEHNARAFTD 362

Query: 492 DGWFHTG 498
           DG++ TG
Sbjct: 363 DGFYRTG 369

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 62.1 bits (151), Expect = 3e-10
 Identities = 83/317 (26%), Positives = 126/317 (39%), Gaps = 73/317 (23%)

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
            + + L  G+   ++ +P    +I  + YT GT+G  KG +LTH  +   +  V   L Q
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 259 F-EDKMTV----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
              D   +     +V ++ LPL HI       Y F          G+ N L  +      
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHI-------YAFTANCMCMMVSGNHNVLITN------ 292

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM-GYKQREASPLADLL 372
                 PR        I   ++EL   R      L    +A M+  G+K  + S      
Sbjct: 293 ------PR-------DIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFS------ 333

Query: 373 AFRKVKARLGGRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-D 430
                       L+L  SGG  L     E + ++T C  +V+GYGLTET  P     P  
Sbjct: 334 -----------ALKLTNSGGTALVKATAERWEQLTGCT-IVEGYGLTET-SPVASTNPYG 380

Query: 431 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPC-------GEVCVRGKTLFSGYYKN 482
           E+  +GT G PV           P      +DD          GE+C++G  +  GY++ 
Sbjct: 381 ELARLGTVGIPV-----------PGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQ 429

Query: 483 PDLTRESI-IDGWFHTG 498
           P+ T E++  +GWF TG
Sbjct: 430 PEATAEALDAEGWFKTG 446

Length = 562

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.6 bits (150), Expect = 5e-10
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 11/119 (9%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-P 440
            L+L + GG  +   V E ++++T   +L++GYGLTE C P     P D     G+ G P
Sbjct: 326 SLKLSVGGGMAVQQAVAERWVKLTGQ-YLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGLP 383

Query: 441 V-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           V S   +L  ++  E+   P  +P  GE+ V+G  +  GY++ P+ T E I DGW  TG
Sbjct: 384 VPSTEIKLVDDDGNEV---PPGEP--GELWVKGPQVMLGYWQRPEATDEVIKDGWLATG 437

Length = 560

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 5/118 (4%)

Query: 383 GRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETC-GPTTVCFPDEMCMVGTAGP 440
             L   I GG     + + +F RV   A  +  YGLTETC G T +    E+  +G+ G 
Sbjct: 264 DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGR 323

Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
              + E+R+ +     + P +    GE+C+RG  +  GY+K+P+ T E+    WF +G
Sbjct: 324 ALAHVEIRIAD-GAGRWLPPNMK--GEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSG 378

Length = 497

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 52/218 (23%), Positives = 83/218 (38%), Gaps = 40/218 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++++EV  +   LRA G +   R+ +   N   WV A  AC    ++C+P+      
Sbjct: 4   SYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                +L+ A  D +   D        PD  SA                      T    
Sbjct: 61  QQTQHLLNDAGADLLISDD--------PDAASALH--------------------TPFAT 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D ++ L            P     I YTSG++G PKGV L+   + T    V   L 
Sbjct: 93  LGEDLYIALRPSAN---PVELPAGTAKITYTSGSTGQPKGVCLSAAALET----VAQSLA 145

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASV 294
           +    +   + +L  LPLA +L+ +   Y     GA+V
Sbjct: 146 EAIA-ILEPERHLCLLPLATLLENIAGVYAPLLMGATV 182

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 59.5 bits (145), Expect = 2e-09
 Identities = 52/204 (25%), Positives = 76/204 (37%), Gaps = 32/204 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I + L+A G  PG RV +       +V A   C     I VP       
Sbjct: 25  TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83

Query: 138 GA----VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           G     +  IL  A    V      V   L     +   L +++      A     A+  
Sbjct: 84  GRHLARLAAILADAGARAVLT-TSAVLAALRAALAAPAALLLLLIAADDLA-----ALAA 137

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                 W               PP P +I  + YTSG++G PKGV++TH  +   ++ + 
Sbjct: 138 A----DW------------RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNL---LANLR 178

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
                F   +  DDV +S+LPL H
Sbjct: 179 AIARAFG--LDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
            LRLV++G   L     E         +++GYG TE     +V  P      GT G    
Sbjct: 260 SLRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNK-PGTVGRPLP 318

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DGWFHTG 498
             E+R+       +  L     G + VRG  + SGY  N + T E  +  DGW+ TG
Sbjct: 319 GIEVRIVSPE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTG 373

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 57.9 bits (140), Expect = 6e-09
 Identities = 41/124 (33%), Positives = 54/124 (43%), Gaps = 21/124 (16%)

Query: 390 SGGAP----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---------PDEMCMVG 436
           +G AP    L    E+  RVT        YGL+ET GP+TVC          P+E   + 
Sbjct: 318 AGAAPPPSVLFAMSEKGFRVT------HTYGLSETYGPSTVCAWKPEWDSLPPEEQARLN 371

Query: 437 TAGPVSVYSELRLEEV--PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
               V       L+ V    M   P D    GE+ +RG  +  GY KNP    E+  +GW
Sbjct: 372 ARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGW 431

Query: 495 FHTG 498
           FH+G
Sbjct: 432 FHSG 435

Length = 567

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 57.6 bits (140), Expect = 8e-09
 Identities = 68/301 (22%), Positives = 107/301 (35%), Gaps = 96/301 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +      +        ++     V + +LP  H       
Sbjct: 214 FLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEE---PPVLVDWLPWNHTFGGNHN 270

Query: 279 LDRVIEEYFFRRGASVGYYHGD---LNALRD----DLMELKPTLLAGVPRVFEKIHEGIK 331
           L  V+       G +   Y  D        D    +L E+ PT+   VP+ +E     + 
Sbjct: 271 LGIVL-----YNGGT--LYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWE----MLV 319

Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
            ALE    LRRR F                                      RL+L+   
Sbjct: 320 PALERDAALRRRFF-------------------------------------SRLKLLFYA 342

Query: 392 GAPLSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGP 440
           GA LS +V + L          R+        G G+TET    T    P        AG 
Sbjct: 343 GAALSQDVWDRLDRVAEATCGERIRMMT----GLGMTETAPSATFTTGPLSR-----AGN 393

Query: 441 VSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHT 497
           + +         P  E+   P+      EV V+G  +  GY++ P+LT E+  + G++ +
Sbjct: 394 IGL-------PAPGCEVKLVPVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS 444

Query: 498 G 498
           G
Sbjct: 445 G 445

Length = 614

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 57.6 bits (140), Expect = 8e-09
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 30/165 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I +ALRA+G  PG  V +      + + A+          VP+      
Sbjct: 14  TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                IL  A    V       +         A  L V+                     
Sbjct: 74  ERRAAILARAGARAVLTDPGLAQP------EEAPDLLVVAD------------------- 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
              D                 P ++  +++TSG++G+PKGV++TH
Sbjct: 109 ---DAAAAESP--APPPPRVDPDDLAYVIFTSGSTGEPKGVMITH 148

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 47/190 (24%), Positives = 74/190 (38%), Gaps = 44/190 (23%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GP V  TY ++++  L++  AL   G + G RV     N  + +EA      +  IC  +
Sbjct: 35  GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTV 94

Query: 132 YDTLGPGAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVM---------- 176
              L P  + +I++HAE      D  FV    + E ++    S +R  V+          
Sbjct: 95  NPRLFPEQIAWIINHAEDRVVITDLTFV---PILEKIADKLPSVERYVVLTDAAHMPQTT 151

Query: 177 ----VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTS 232
               V +    AE            ++W  F                     + YTSGT+
Sbjct: 152 LKNAVAYEEWIAEAD--------GDFAWKTF--------------DENTAAGMCYTSGTT 189

Query: 233 GDPKGVVLTH 242
           GDPKGV+ +H
Sbjct: 190 GDPKGVLYSH 199

Length = 542

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 57.5 bits (139), Expect = 9e-09
 Identities = 83/298 (27%), Positives = 109/298 (36%), Gaps = 79/298 (26%)

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           P+ W   +    V++ +     P ++  I++TSGT   PKGV LTH   A  ++     L
Sbjct: 167 PFEW--LMRWFGVSDKD-----PEDVAVILFTSGTEKLPKGVPLTH---ANLLANQRACL 216

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
             F  K   DDV +SFLP  H        Y F                      L P LL
Sbjct: 217 KFFSPKE--DDVMMSFLPPFH-------AYGFNSCT------------------LFP-LL 248

Query: 317 AGVPRVF-------EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
           +GVP VF       +KI E I +A           FD +       +    KQ    P  
Sbjct: 249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI-------LKTAKKQESCLP-- 299

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGP----T 424
                          LR V+ GG      + +E L+      L QGYG TE C P     
Sbjct: 300 --------------SLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE-CSPVITIN 344

Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
           TV  P     VG   P+     + +  V E    P+     G V  RG +LFSGY   
Sbjct: 345 TVNSPKHESCVGM--PI---RGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE 397

Length = 539

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 47/144 (32%), Positives = 62/144 (43%), Gaps = 29/144 (20%)

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
           D LA   +  R    LR +  GGA +   V E L+       V+GYGLTET   T    P
Sbjct: 292 DFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPP 351

Query: 430 DE---MCM-VGTAG-------PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           D     C+ + T G       P +      LEE+P            GE+ V G  +F G
Sbjct: 352 DRPKLQCLGIPTFGVDARVIDPET------LEELP--------PGEVGEIVVHGPQVFKG 397

Query: 479 YYKNPDLTRESII--DG--WFHTG 498
           Y+  P+ T E+ I  DG  +F TG
Sbjct: 398 YWNRPEATAEAFIEIDGKRFFRTG 421

Length = 546

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 57.2 bits (139), Expect = 1e-08
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 28/197 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   L A G  PG  VGIY  N  ++VEAM        + V +      
Sbjct: 30  TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVE 89

Query: 138 GAVNFILDHAEIDFVFVQDK---KVKELLSPDCRSAQRLRVMVCF-TSLTAEQKEMAVQT 193
             + ++LD ++   +  + +   +V E+L        +LR +V        +    AV  
Sbjct: 90  DELRYLLDDSDAVALVYEREFAPRVAEVLP----RLPKLRTLVVVEDGSGNDLLPGAV-- 143

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                 +++ L  G   E +     P ++  ++YT GT+G PKGV+   E         D
Sbjct: 144 -----DYEDALAAGS-PERDFGERSPDDL-YLLYTGGTTGMPKGVMWRQE---------D 187

Query: 254 LFLDQFE--DKMTVDDV 268
           +F       D  T + +
Sbjct: 188 IFRVLLGGRDFATGEPI 204

Length = 533

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 98/432 (22%), Positives = 155/432 (35%), Gaps = 75/432 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+   V +I   L   G   G  V     N  ++     AC  +  +  PL      
Sbjct: 55  SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114

Query: 138 GAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAEQKEM 189
             ++F+L+HA+   VFV     +          L         LR +V       +  + 
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSK---LPALRQVVVIDGDGDDSFDR 170

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            + T  +  + D    L          P P ++  ++YTSGT+G+PKGV+ T  T+    
Sbjct: 171 VLMTPERDDTPDAAAILAGPR------PSPDDVTQLIYTSGTTGEPKGVMHTANTL---F 221

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLM 309
           S +  + ++ E  +   DV L   P+AH                 G+ +G        LM
Sbjct: 222 SNIHPYAERLE--LGGGDVILMASPMAHQ---------------TGFMYG--------LM 256

Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
              P +L     V + I     +A E +R                   + +       L 
Sbjct: 257 --MPLIL-NATAVLQDIWNPA-RAAELIRETG----------------VTFTMASTPFLT 296

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
           DL    K        L   +  GAP+   + E       A +V  +G+TE  G  TV  P
Sbjct: 297 DLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEP 355

Query: 430 D---EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
           D   E        P+    E+++ +      S  +    G + VRG + F GY K P L 
Sbjct: 356 DDALEKASTTDGRPLPGV-EVKVIDANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLN 411

Query: 487 RESIIDGWFHTG 498
                +GWF TG
Sbjct: 412 STD-AEGWFDTG 422

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 97/428 (22%), Positives = 153/428 (35%), Gaps = 77/428 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +V ++ +ALR  G +   RV +   +   +  A        ++ V L   L  
Sbjct: 32  SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L+ +    VFV   ++  ++      +  L   V      A + ++A       
Sbjct: 92  DDYAYMLEDSRARVVFVS-GELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI---ATFVSGVDL 254
               E L      + +    Q  +    +Y+SG++G PKGVV TH      A   +   L
Sbjct: 144 ----ELLATE-SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
            + +       DDV  S   L           FF  G          NAL         T
Sbjct: 199 GIRE-------DDVVFSAAKL-----------FFAYGLG--------NAL---------T 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK---LAWMNMGYKQREASPLADL 371
               V         G    L   RP    +FD L +++      +   Y        A +
Sbjct: 224 FPMSV---------GATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLY--------AAM 266

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           LA   + A    RLRL  S G  L  EV +  +      +V G G TE         P +
Sbjct: 267 LADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD 326

Query: 432 MCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
           +   GT+G PV  Y   RL  V + G       P GE+ + G +  + Y+ N   TR++ 
Sbjct: 327 V-RYGTSGKPVPGY---RLRLVGDGGQDVAAGEP-GELLISGPSSATMYWNNRAKTRDTF 381

Query: 491 IDGWFHTG 498
              W  +G
Sbjct: 382 QGEWTRSG 389

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 43/186 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY ++ + + + + A  A G   G  V +   N P+ + A+ A     L    L+    P
Sbjct: 39  TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH----P 94

Query: 138 -GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
            G+++   DHA +    ++D  +  L+       +R   ++            A    +K
Sbjct: 95  LGSLD---DHAYV----LEDAGISTLIVDPAPFVERALALL------------ARVPSLK 135

Query: 197 PYSWDEFLHLGKVNEMEIL-------PPQPF-------NICTIMYTSGTSGDPKGVVLTH 242
                  L LG V +   L        P P        +I  + YT GT+G PKGV+ TH
Sbjct: 136 -----HVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTH 190

Query: 243 ETIATF 248
            +IAT 
Sbjct: 191 RSIATM 196

Length = 524

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 27/130 (20%)

Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-- 439
             L+ V  G APLS + +++F++       +QGYG+TE+              VGT G  
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA------------VGTRGFN 366

Query: 440 --PVSVYSELRLEEVPEMGYSPLD------DPP--CGEVCVRGKTLFSGYYKNPDLTRES 489
              +S YS + L   P M    +D       PP  CGE+ ++G  +  GY  NP  T+ +
Sbjct: 367 TEKLSKYSSVGL-LAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQST 425

Query: 490 II-DGWFHTG 498
           I  DGW  TG
Sbjct: 426 IDKDGWLRTG 435

Length = 560

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 49/222 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   W T++E+   V  + +AL A G   G R+ ++  NC Q  E+M A   L  + VP 
Sbjct: 29  GDRSW-TWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVP- 86

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------- 182
                    NF     E+ ++                 A   R M+C             
Sbjct: 87  --------TNFRQTPDEVAYL---------------AEASGARAMICHADFPEHAAAVRA 123

Query: 183 TAEQKEMAVQTGIKPY--SWDEFL--HLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKG 237
            +      V  G       ++  +  HLG +V    +    P   C   +TSGT+G PK 
Sbjct: 124 ASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDP---CWFFFTSGTTGRPKA 180

Query: 238 VVLTHETIATFVSG--VDLFLDQFEDKMTVDDVYLSFLPLAH 277
            VLTH  +A  ++    DL         T  D  L   PL+H
Sbjct: 181 AVLTHGQMAFVITNHLADLMPG-----TTEQDASLVVAPLSH 217

Length = 528

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           GE+ VR  +L  GY+  P+ T E++ DGW HTG
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTG 447

Length = 567

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 48/219 (21%), Positives = 82/219 (37%), Gaps = 34/219 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +  ++   L A+G  P   VGI      + V  + A        VPL      
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + ++LD + +  +  Q   + +L  P       LR +     L      +   +G  P
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLPVPA-----GLRSLC----LDEPADLLCGYSGHNP 649

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                            +   P N+  ++YTSG++G PKGV ++H  +A +V  +   L 
Sbjct: 650 E----------------VALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ 693

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV 294
                +  DD  L     A   D  + E F     GA++
Sbjct: 694 -----LAADDSMLMVSTFA--FDLGVTELFGALASGATL 725

Length = 3956

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 69/307 (22%), Positives = 111/307 (36%), Gaps = 102/307 (33%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  I+YTSG++G+PKGV+L+H  +      +  +L+     +T DD  L+ LP +    
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-----LTEDDRILAVLPFSF--- 54

Query: 281 RVIEEY-------FFRRGASV------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
               +Y        FR G ++       +    L  L  +    + T  AGVP  + +  
Sbjct: 55  ----DYGLSQLLTAFRVGGTLVLESRFAFPRDVLKHLAKE----RITGFAGVPTTWAQ-- 104

Query: 328 EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
                 L  L PL R  F +                                     LR 
Sbjct: 105 ------LLRLDPLAREDFPS-------------------------------------LRY 121

Query: 388 VISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGPVS 442
           + + G  L  + + +  R    A L   YGLTE    +T   P+E       +G A P  
Sbjct: 122 LTNAGGALPAKTILQLRRAFPDAKLFSMYGLTE-AFRSTYLPPEELDRRPDSIGKAIP-- 178

Query: 443 VYSELRLEEVPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------ 491
              EL + +         D   C     GE+  RG  +  GY+ +P+ T E +       
Sbjct: 179 -NVELWVVDE--------DGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPG 229

Query: 492 DGWFHTG 498
           +   +TG
Sbjct: 230 EIVLYTG 236

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           T+  +      +  AL    G     RVG    NC + +E + A   +  +  PL   L 
Sbjct: 40  TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              +  I++HAE D V V D ++ E L    +    +R +V      A+     +  GIK
Sbjct: 100 NDQIVHIINHAE-DEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIK 158

Query: 197 PYSWDEFLHLGKVNEMEILPPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            YS++  L  G+    +  P         I Y++GT+G PKGVV +H   + ++  + L 
Sbjct: 159 VYSYEALLD-GRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHR--SLYLQSLSLR 214

Query: 256 -LDQFEDKMTVDDVYLSFLPLAHIL 279
             D     +T  + +L  +P+ H+L
Sbjct: 215 TTDSL--AVTHGESFLCCVPIYHVL 237

Length = 576

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 74/299 (24%), Positives = 112/299 (37%), Gaps = 77/299 (25%)

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274
           L    F     MYTSGT+G PKGV +    +A F + +   +D     +  DDV+ +   
Sbjct: 86  LDDDLF---AQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAID-----LRDDDVFWN--- 134

Query: 275 LAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
                            A  G+ +G   A+        P L  G+  VF    EG   A 
Sbjct: 135 ----------------IADPGWAYGLYYAI------TGP-LAMGITTVF---LEGGFTA- 167

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKA-------RLGGRLRL 387
                     +D L +  +   N        SP A    +R + A       R+  +LR+
Sbjct: 168 -------ENTYDVLERLGVT--NFAG-----SPTA----YRMLMAAGADAAARIKLKLRV 209

Query: 388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG----PVSV 443
             S G PL+ EV  + +      +   YG TET     V     +     AG    P+  
Sbjct: 210 ASSAGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGNHHALAHEVRAGSMGLPLPG 267

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTG 498
           Y    L++  +    PL D   G++ +   +     FSGY+ +P+ T E I   W+ TG
Sbjct: 268 YRIAVLDDDGQ----PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTG 322

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 88/451 (19%), Positives = 133/451 (29%), Gaps = 106/451 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +  E+   V ++ + L A G   G RV ++  NC +WV    AC  L    + +      
Sbjct: 37  SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRS 96

Query: 138 GAVNFILDHAEIDFVFVQDK-------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             V  IL      ++ V           +   + PD     R   +V   +         
Sbjct: 97  HEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPG 156

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT-SGTSGDPKGV------VLTHE 243
            +  +        L                +   +++T SGT+  PK V      +L H 
Sbjct: 157 ARVQLFA------LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHA 210

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNA 303
                  G D              V L+ LP   +                         
Sbjct: 211 RAIARAYGYD-----------PGAVLLAALPFCGVFG----------------------- 236

Query: 304 LRDDLMELKPTLLAGVPRVFEKIHEGIK--KALEELR--------PLRRRIFDALYKYKL 353
                  L   L  G P V E + +  +  +AL   R         + RRI D       
Sbjct: 237 ----FSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA----- 287

Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL-----STEVEEFLRVTCC 408
                   +R   P A L  F      LG    L  + G PL     S+EV+  +     
Sbjct: 288 -------GERADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALV----- 335

Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV 468
                         P T      +      G      E R+        + L D   GE+
Sbjct: 336 -----------ALQPATDPVSVRI----EGGGRPASPEARVRARDPQDGALLPDGESGEI 380

Query: 469 CVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
            +R  +L  GY  NPD T  ++  DG+F TG
Sbjct: 381 EIRAPSLMRGYLDNPDATARALTDDGYFRTG 411

Length = 540

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ + L A G  PG RV +   NCP+++ A  A N L  + VP+   L  
Sbjct: 5   TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64

Query: 138 GAVNFILDHAEIDFVFV 154
             +  ILDH+    + V
Sbjct: 65  EELAHILDHSGARLIVV 81

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 8/62 (12%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL----DQFEDKMTVDDVYLSFLPLA 276
           ++  IMY+SGT+G  KGVVLTH      ++ V+LF+     Q+E   + D+VYL+ LP+ 
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHR---NLIAMVELFVRFEASQYEYPGS-DNVYLAALPMF 254

Query: 277 HI 278
           HI
Sbjct: 255 HI 256

Length = 560

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEMCMVGTAGP 440
           LR + S  APL+ E  + L+    A +V  +G+TE     T             V + G 
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGL 356

Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           V   +  ++  V   G  PL     GEV +RG T+  GY  +P +T  +  DGW  TG
Sbjct: 357 VGRSTGAQIRIVGSDG-LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTG 413

Length = 534

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 51.7 bits (124), Expect = 6e-07
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 31/164 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V ++ + LR  G   G R+ +   N    V    AC  +  I VPL      
Sbjct: 24  TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL------ 77

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N+ L  +E+D   +QD + + LL  D  +A R   +    +  A     A++    P
Sbjct: 78  ---NWRLSASELD-ALLQDAEPRLLLGDDAVAAGRT-DVEDLAAFIASAD--ALEPADTP 130

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
                            +PP+  ++  I++TSGTSG PKGV+L+
Sbjct: 131 S----------------IPPERVSL--ILFTSGTSGQPKGVMLS 156

Length = 488

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 20/93 (21%)

Query: 415 YGLTETCGPT-TVCFPDE-MCMVGTAGPVSVYSELRL-----EEVP--EMGYSPLDDPPC 465
           YG TE   P  TV  P+E +   G+AG   +  E R+      +V   E+G         
Sbjct: 319 YGQTEI-APLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVG--------- 368

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
            E+  R   L  GY+ +P+ T E+   GWFH+G
Sbjct: 369 -EIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSG 400

Length = 523

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  + LR  G   G RV ++  NCPQ+         L  + VP+      
Sbjct: 60  TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------TAEQKEM 189
             +++ L+ A  + +   D+     +    R+   LR  V  TSL        T    + 
Sbjct: 120 HELSYELNDAGAEVLLALDQLAP--VVEQVRAETSLR-HVIVTSLADVLPAEPTLPLPDS 176

Query: 190 AVQTGIKPYSWDEFL-HLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHE---- 243
                +      + L  L        LP P    +  + YT GT+G PKG   T      
Sbjct: 177 LRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVY 236

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           T A     V +   +       D V+LSFLP 
Sbjct: 237 TAAAAY-AVAVVGGE-------DSVFLSFLPE 260

Length = 567

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 34/133 (25%)

Query: 388 VISGGAP----LSTEVEEFLRVTCCAFLV-QGYGLTETCGPTTVC--------FPDEMCM 434
           V++GG+P    L  +V+         F V   YGLTE  GP   C         P+   M
Sbjct: 305 VLTGGSPPPAALVKKVQRL------GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 435 ---------VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
                    +     V V ++   E VP       D    GE+ ++G ++  GY KNP  
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPR------DGKTMGEIVIKGSSIMKGYLKNPKA 412

Query: 486 TRESIIDGWFHTG 498
           T E+   GW +TG
Sbjct: 413 TSEAFKHGWLNTG 425

Length = 579

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
           GE+C RG ++  GY+ +P+ T E+I  DGW HTG
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTG 432

Length = 559

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 10/122 (8%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTE-TCGPTTVCFPDEMCMVGTAGPV 441
           +L+ +++  APL+ E+            VQ  YGLTE +C   T   P++    G A   
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKG--HGIAKKN 361

Query: 442 SVYSELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH 496
           SV   L   EV    P+ G S   + P GE+CVR + +  GYY N + T  +I  DGW H
Sbjct: 362 SVGFILPNLEVKFIDPDTGRSLPKNTP-GELCVRSQCVMQGYYNNKEETDRTIDEDGWLH 420

Query: 497 TG 498
           TG
Sbjct: 421 TG 422

Length = 546

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 64/283 (22%), Positives = 101/283 (35%), Gaps = 80/283 (28%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI------ 278
            ++TSG++G PK V+ T   +   ++  +       +      V L ++P  H       
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP--REPDPPPPVSLDWMPWNHTMGGNAN 282

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + ++      +   G  + G +   +  LR    E+ PT+   VP  +  + E    A+
Sbjct: 283 FNGLLWGGGTLYIDDGKPLPGMFEETIRNLR----EISPTVYGNVPAGYAMLAE----AM 334

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
           E+   LRR  F                                       LRL+  GGA 
Sbjct: 335 EKDDALRRSFFK-------------------------------------NLRLMAYGGAT 357

Query: 395 LSTEVEEFLRVTCCA------FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR 448
           LS ++ E ++               GYG TET  PTT     +   VG  G      EL+
Sbjct: 358 LSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLPLPGVELK 416

Query: 449 LEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRE 488
           L              P G   EV V+G  +  GY+K+P+LT  
Sbjct: 417 L-------------APVGDKYEVRVKGPNVTPGYHKDPELTAA 446

Length = 624

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 47/131 (35%), Positives = 61/131 (46%), Gaps = 34/131 (25%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPT-----------TVCFPDE 431
            +RL ISG APL  E   EF   T  A L + YG+TET   T           TV FP  
Sbjct: 270 HMRLFISGSAPLLAETHREFQERTGHAIL-ERYGMTETNMNTSNPYDGERRAGTVGFP-- 326

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC---VRGKTLFSGYYKNPDLTRE 488
             + G          LR+ + PE G + L   P GE+    V+G  +F GY++ P+ T E
Sbjct: 327 --LPGV--------SLRVTD-PETG-AEL---PPGEIGMIEVKGPNVFKGYWRMPEKTAE 371

Query: 489 SI-IDGWFHTG 498
               DG+F TG
Sbjct: 372 EFRADGFFITG 382

Length = 504

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 40/188 (21%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V ++ +ALR  G +PG RV  Y  N P+ V AM A  ++  I   C P    
Sbjct: 88  SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP---D 144

Query: 135 LGPGAVNFILDHAE---------IDFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G  AV   LD            +D      K      K+ E++   P       L  +V
Sbjct: 145 FGVEAV---LDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS------LEAVV 195

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--PPQPFN-ICTIMYTSGTSGD 234
               L++       Q     +S    L     +    L     PF+    I+Y+SGT+G 
Sbjct: 196 VVPYLSS-----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGL 250

Query: 235 PKGVVLTH 242
           PK +V   
Sbjct: 251 PKCIVHGA 258

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 31/177 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++      Q+  AL A G EPG RVG    N  + +EA    +    +C  +   L P
Sbjct: 41  TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFP 100

Query: 138 GAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM--- 189
             + +I++HAE      D  F+    + + L+P C + +    M     L A    +   
Sbjct: 101 EQIAYIVNHAEDRYVLFDLTFL---PLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCY 157

Query: 190 ----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                 Q G   Y W  F      +E      Q  ++C   YTSGT+G+PKG + +H
Sbjct: 158 ETLVGAQDG--DYDWPRF------DEN-----QASSLC---YTSGTTGNPKGALYSH 198

Length = 539

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 19/210 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA---MEACNALSLICVPLYDT 134
           T+ + Y+   ++ SAL      PG  V +   N P   EA   +    A+ + CV +   
Sbjct: 47  TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAV-VNCVNI--R 103

Query: 135 LGPGAVNFILDHAEIDFVFVQDK------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKE 188
           L    + F+L+H++ + V V  +      +  ++L+   +S+ +  +++     T + K 
Sbjct: 104 LNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKS 163

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           +    G     +++FL  G   E    PP   +    + YTSGT+  PKGVVL H     
Sbjct: 164 LQYALGKGAIEYEKFLETGD-PEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYL 222

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                 L        M    VYL  LP+ H
Sbjct: 223 MALSNALIWG-----MNEGAVYLWTLPMFH 247

Length = 567

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV--DDVYLSFL 273
             +P +   I++TSG+ G PKGVVL+H  +   +       DQ    + +  +DV L  L
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANI-------DQIAAVIDLNTEDVLLGAL 193

Query: 274 PLAH 277
           PL H
Sbjct: 194 PLFH 197

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           GE+CVRG  +  GY+  P+ T E+  DGW HTG
Sbjct: 366 GEICVRGPLVMDGYWNRPEETAEAFRDGWLHTG 398

Length = 524

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 23/175 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+Y+EV ++   LR  G   G RV IY    P+ V AM AC  +  I   ++     
Sbjct: 75  TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134

Query: 138 GAVNFILDHAE------IDFVFVQDKKV--KELLSPDCRSAQR--LRVMVCFTSLTAEQK 187
             +   +D A+        F     + V  K LL      +Q    +V++    L   Q 
Sbjct: 135 KELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLI----LNRGQV 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVV 239
              ++ G +   W E +      +   +   P    +   I+YTSGT+G PKGVV
Sbjct: 191 PAPLKPG-RDLDWAELMA-----KARPVDCVPVESTDPLYILYTSGTTGKPKGVV 239

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 49.2 bits (117), Expect = 5e-06
 Identities = 62/287 (21%), Positives = 103/287 (35%), Gaps = 59/287 (20%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              N+  ++YTSG++G PKGV ++H  +                +++  D  L F+  +  
Sbjct: 2145 GENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAA-----GERYELSPADCELQFMSFS-- 2197

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D   E++F     GA V         +RDD +     L   + R       G+      
Sbjct: 2198 FDGAHEQWFHPLLNGARV--------LIRDDELWDPEQLYDEMER------HGVTIL--- 2240

Query: 337  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                    F  +Y  +LA     + +R+  P A               +R+   GG  + 
Sbjct: 2241 -------DFPPVYLQQLA----EHAERDGRPPA---------------VRVYCFGGEAVP 2274

Query: 397  TE-VEEFLRVTCCAFLVQGYGLTETCGPTTV--CFPDEMCMVGTAG-PVSVYSELRLEEV 452
               +          +L  GYG TE      +  C P + C  G A  P+      R   +
Sbjct: 2275 AASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC--GAAYVPIGRALGNRRAYI 2332

Query: 453  PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
             +   + L     GE+ + G+ L  GY   P LT E  + D +  +G
Sbjct: 2333 LDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASG 2379

Length = 5163

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ EE+ +  +   + G   G +V ++  NCP+++        +  I VP+   L  
Sbjct: 39  SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 98

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL +++   +    +            A  LR  +C T +     +         
Sbjct: 99  EESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVS------ 151

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            S+ +             P    +   I++TSGT+  PKGVV+TH  +         F  
Sbjct: 152 -SFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL--------RFAG 202

Query: 258 QFED---KMTVDDVYLSFLPLAHI 278
            +      +  DDVYL+ +P  HI
Sbjct: 203 YYSAWQCALRDDDVYLTVMPAFHI 226

Length = 517

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 48.8 bits (116), Expect = 6e-06
 Identities = 97/430 (22%), Positives = 150/430 (34%), Gaps = 104/430 (24%)

Query: 78   TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            TY E+     ++  AL A G  P   VGI          AME   +  ++ V L   L  
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGI----------AME--RSAEMM-VGLLAVLKA 4624

Query: 138  GAVNFILDHAEIDF------VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
            G     LD    ++        ++D     LL+      QRL +     SL  ++ E   
Sbjct: 4625 GGAYVPLD---PEYPRERLAYMMEDSGAALLLT-QSHLLQRLPIPDGLASLALDRDE--- 4677

Query: 192  QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                    W+     G       +   P N+  ++YTSG++G PKGV ++H    + V+ 
Sbjct: 4678 -------DWE-----GFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHG---SLVNH 4722

Query: 252  VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASVGYYHGDLNALRDDLM 309
            +    +++E  +T DD  L F+  +   D   E  +     GASV         +RDD +
Sbjct: 4723 LHATGERYE--LTPDDRVLQFMSFS--FDGSHEGLYHPLINGASV--------VIRDDSL 4770

Query: 310  ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
                 L A       +IHE           +   +F  +Y  +LA          A    
Sbjct: 4771 WDPERLYA-------EIHE---------HRVTVLVFPPVYLQQLA--------EHAERDG 4806

Query: 370  DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET--------C 421
            +  + R               G A      +   R     +L  GYG TET         
Sbjct: 4807 EPPSLRVY----------CFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKA 4856

Query: 422  GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
                 C    M +    G  S Y       V +   +PL     GE+ + G+ +  GY +
Sbjct: 4857 RDGDACGAAYMPIGTPLGNRSGY-------VLDGQLNPLPVGVAGELYLGGEGVARGYLE 4909

Query: 482  NPDLTRESII 491
             P LT E  +
Sbjct: 4910 RPALTAERFV 4919

Length = 5163

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 19/124 (15%)

Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV---GTAG- 439
           LR   + G PL+ EV   F   T    L++G+G TET    T+       M    G+ G 
Sbjct: 303 LRYCTTAGEPLNPEVFNTFKEKTGIK-LMEGFGQTET----TLTIATFPWMEPKPGSMGK 357

Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR---GKT--LFSGYYKNPDLTRESIIDGW 494
           P   Y    ++ +   G    +    GE+ +R   GK   LF GYY++P+ T E   DG+
Sbjct: 358 PSPGYD---IDIIDPDG-KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGY 413

Query: 495 FHTG 498
           +HTG
Sbjct: 414 YHTG 417

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 42/203 (20%), Positives = 77/203 (37%), Gaps = 29/203 (14%)

Query: 79  YKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG 138
           Y+ +          L A G +PG RV +       +VEA  AC    L+ VPL     P 
Sbjct: 52  YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPL-----PL 106

Query: 139 AVNFILDHAEID--FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
            + F    + I      +   +   +++PD         ++ + +             + 
Sbjct: 107 PMGFGGRESYIAQLRGMLASAQPAAIITPD--------ELLPWVNEATHGNP-----LLH 153

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
             S   F       ++ +  P P +I  + Y+SG++  P+GV++TH  +   +  +    
Sbjct: 154 VLSHAWF-KALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISH-- 210

Query: 257 DQFEDKMTV--DDVYLSFLPLAH 277
               D + V   D  +S+LP  H
Sbjct: 211 ----DGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 51/204 (25%), Positives = 74/204 (36%), Gaps = 22/204 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   LRA G   G  V I   N P++ E   A     L   P       
Sbjct: 13  TYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTP------- 65

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +N+ L  AEI ++ V D   K L+ S           +            + V   + 
Sbjct: 66  --INWHLTAAEIAYI-VDDSGAKVLIVSAALADT--AAELAAELPAGVPL-LLVVAGPVP 119

Query: 197 PY-SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV--LTHETIATFVSGVD 253
            + S++E L       +            ++Y+SGT+G PKG+   L          G+ 
Sbjct: 120 GFRSYEEALAAQPDTPIADETAG----ADMLYSSGTTGRPKGIKRPLPGLDPDE-APGMM 174

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
           L L  F      D VYLS  PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 4/37 (10%)

Query: 466 GEVCVRG---KTLFSGYYKNPDLTRESII-DGWFHTG 498
           GE+C++G   KT+F  YY +P  T + +  DGW HTG
Sbjct: 367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTG 403

Length = 517

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+++   +  + LRA G  PG RV +   + P+ V A  AC     + V L   L P
Sbjct: 12  TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71

Query: 138 GAVNFILDHAE 148
             +  ILD + 
Sbjct: 72  QDLEHILDDSG 82

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 86/435 (19%), Positives = 133/435 (30%), Gaps = 125/435 (28%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E   +  + L + G   G RV       P+   A      L  +  PL+   GP
Sbjct: 2   SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                I D  E+                        +V++    L    +    +     
Sbjct: 62  EP---IRDRLEL---------------------GEAKVLITTPEL---YERTDPEDPA-- 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                 LH                     +TSGT+G PKGV+  H  +    +     LD
Sbjct: 93  -----LLH---------------------FTSGTTGKPKGVLHVHRAVVAHYATARYVLD 126

Query: 258 QFEDKM---TVDD------VYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR--D 306
              D +   T D        Y    PL +             G ++    G+ +A R   
Sbjct: 127 LRPDDVYWCTADPGWVTGTSYGIIAPLLN-------------GVTLVVDEGEFDAERWYG 173

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
            L E K T+    P                LR L R   +   +Y L             
Sbjct: 174 ILEEEKVTVWYTAPTA--------------LRMLMRAGPELAARYDL------------- 206

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426
                             LR + S G PL+ EV  +        +   +  TET      
Sbjct: 207 ----------------SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIA 250

Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRG--KTLFSGYYKNP 483
            +P      G+ G      E  + E    G +P+  P   GE+ ++    ++F GY  N 
Sbjct: 251 NYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNE 310

Query: 484 DLTRESIIDGWFHTG 498
           +    S +DGW+ TG
Sbjct: 311 ERYASSFVDGWYLTG 325

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 59/286 (20%), Positives = 94/286 (32%), Gaps = 71/286 (24%)

Query: 218  QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               N+  ++YTSG++G PKGV + H  +A  +  +         ++  +D  L F+  + 
Sbjct: 3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWI-----AEAYELDANDRVLLFMSFS- 3288

Query: 278  ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              D   E +                           TL+ G   V   + +      EEL
Sbjct: 3289 -FDGAQERFL-------------------------WTLICGGCLV---VRDNDLWDPEEL 3319

Query: 338  RPL--RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
                   RI  A +                + L                L + + GG  +
Sbjct: 3320 WQAIHAHRISIACFP--------------PAYLQQFAEDAGGAD--CASLDIYVFGGEAV 3363

Query: 396  S-TEVEEFLRVTCCAFLVQGYGLTET--------CGPTTVCFPDEMCMVGTAGPVSVYS- 445
                 E+  R      L  GYG TE         CG   VC      +       S+Y  
Sbjct: 3364 PPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVL 3423

Query: 446  ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 491
            + +L  VP +G +       GE+ + G  L  GY++ P LT E  +
Sbjct: 3424 DGQLNPVP-VGVA-------GELYIGGVGLARGYHQRPSLTAERFV 3461

Length = 3956

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 44.9 bits (107), Expect = 8e-05
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
             +P +  TI+++SG+ G+PKGV+L+H  I + +  +          +  DDV LS LP 
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSSLPF 832

Query: 276 AH 277
            H
Sbjct: 833 FH 834

Length = 1146

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 27/124 (21%)

Query: 385  LRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
            LR V +G   +  E  +       +R+      ++GYG+TET  P            GT 
Sbjct: 909  LRYVFAGAEKVKEETRQTWMEKFGIRI------LEGYGVTET-APVIALNTPMHNKAGTV 961

Query: 439  GPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIIDGW 494
            G +    E RLE VP  + G         G + VRG  +  GY +  NP    E   DGW
Sbjct: 962  GRLLPGIEYRLEPVPGIDEG---------GRLFVRGPNVMLGYLRAENPG-VLEPPADGW 1011

Query: 495  FHTG 498
            + TG
Sbjct: 1012 YDTG 1015

Length = 1140

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 44.5 bits (106), Expect = 9e-05
 Identities = 35/124 (28%), Positives = 47/124 (37%), Gaps = 19/124 (15%)

Query: 383 GRLRL-VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-P 440
           GR  L  + GG  L  ++ E L  T    L   YG TET   +T           T G P
Sbjct: 205 GRESLTALCGGEALPRDLAERLLSTGAE-LWNMYGPTETTIWSTCARVTAADGPVTIGRP 263

Query: 441 V---SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
           +    VY    +L+   VP  G         GE+ + G  +  GY   P+LT E  +   
Sbjct: 264 IANTQVYVLDEDLQP--VPP-GV-------PGELYIGGDGVARGYLGRPELTAERFVPDP 313

Query: 495 FHTG 498
           F   
Sbjct: 314 FDDP 317

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 44.5 bits (106), Expect = 9e-05
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 36/122 (29%)

Query: 385 LRLVISGGAPLSTEVEEFLR---VTC-CAFLVQGYGLTETCGPTTVCFP--DEMCMVGTA 438
           L+ V+ GGA +  E+ E      + C C     GYGLTE    +TVC    D +  VG+ 
Sbjct: 242 LKAVLLGGAAIPVELTEQAEQQGIRCWC-----GYGLTEMA--STVCAKRADGLAGVGSP 294

Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP---DLTRESIIDGWF 495
            P     E++L +              GE+ +RG +L  GY++      L  +   +GWF
Sbjct: 295 LP---GREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVND---EGWF 334

Query: 496 HT 497
            T
Sbjct: 335 AT 336

Length = 458

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E ++ +LQ    L A G   G  V +   N   ++E   A + L  + +P+   L  
Sbjct: 29  SYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAA 88

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V +IL  A    + V ++                     F ++ A +    V      
Sbjct: 89  DEVAYILGDAGAKLLLVDEE---------------------FDAIVALETPKIV-IDAAA 126

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
            +    L  G +         P ++  +MYTSGT+  PKGV+ ++  + 
Sbjct: 127 QADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLH 175

Length = 497

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 58/284 (20%), Positives = 95/284 (33%), Gaps = 60/284 (21%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            P N+  ++YTSG++G PKGV + H  ++  +  +          + V D  L F   +  
Sbjct: 3195 PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG-----LGVGDRVLQFTTFS-- 3247

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D  +EE F     GA V         L        P LL  +                 
Sbjct: 3248 FDVFVEELFWPLMSGARV--------VLAGPEDWRDPALLVEL----------------- 3282

Query: 337  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
               +     D L+ Y                        +  A     L+ ++ GG  L 
Sbjct: 3283 ---INSEGVDVLHAYPSMLQA---------------FLEEEDAHRCTSLKRIVCGGEALP 3324

Query: 397  TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL--RLEEVPE 454
             ++++  +V     L   YG TE     T+      C+      V +   +  R   + +
Sbjct: 3325 ADLQQ--QVFAGLPLYNLYGPTE----ATITVTHWQCVEEGKDAVPIGRPIANRACYILD 3378

Query: 455  MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
                P+     GE+ + G+ L  GY+  P LT E  +   F  G
Sbjct: 3379 GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPG 3422

Length = 5163

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 44.4 bits (106), Expect = 1e-04
 Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 39/187 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V  + +ALRA G  PG RV  Y  N P+ V AM A  +L  I   C P +  
Sbjct: 116 SWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILDH-AEI--------DFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G   V   LD   +I        D      K      KV EL +  P   S + + V+V
Sbjct: 174 -GVQGV---LDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP---SLEHV-VVV 225

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFN--ICTIMYTSGTSGDP 235
            +          A         W++FL   +  E+E   P PF+  +  I+Y+SGT+G P
Sbjct: 226 PYL-----GPAAAAAALPGALLWEDFLAPAEAAELEFE-PVPFDHPLW-ILYSSGTTGLP 278

Query: 236 KGVVLTH 242
           K +V  H
Sbjct: 279 KCIVHGH 285

Length = 655

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
           W + L   +  E       P ++  +++TSGTSGDPK V  TH  +A   +GV L   +F
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA--SAGVML-AQRF 188

Query: 260 EDKMTVDDV-YLSFLPLAH 277
              +  DDV Y+S +PL H
Sbjct: 189 G--LGPDDVCYVS-MPLFH 204

Length = 529

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 466 GE-VCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           GE V   G   F GYY +P+   E +  G + +G
Sbjct: 353 GELVNTAGPGGFEGYYNDPEADAERMRGGVYWSG 386

Length = 529

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
            +  QP +   I++TSG+ G PKGVV +H+++   V  +    D      T +D ++S L
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD-----FTPNDRFMSAL 413

Query: 274 PLAH 277
           PL H
Sbjct: 414 PLFH 417

Length = 718

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 27/129 (20%)

Query: 383 GRLRLVISGGAPLSTE-----VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV-- 435
             L  + +GGAP + E     +++ + +        G+G++E    T      +  ++  
Sbjct: 252 RHLTALFTGGAPHAAEDILGWLDDGIPMVD------GFGMSE--AGTVFGMSVDCDVIRA 303

Query: 436 --GTAGPVSVYSELRLEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESI 490
             G AG  +   + R+  V + G    +D P G   E+ +RG  L  GY++ P  T  + 
Sbjct: 304 KAGAAGIPTPTVQTRV--VDDQG----NDCPAGVPGELLLRGPNLSPGYWRRPQATARAF 357

Query: 491 I-DGWFHTG 498
             DGWF TG
Sbjct: 358 TGDGWFRTG 366

Length = 488

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 30/208 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++    R+ G + G  V I+  N  +++E   A     L    +   L P
Sbjct: 26  TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85

Query: 138 GAVNFILDH--AEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
               +I+D   A           V   L   C    R R+++                G 
Sbjct: 86  AEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVL---------DGDGELEGF 135

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN---ICTIM-YTSGTSGDPKGVV--LTHETIATFV 249
             Y+            +  LP  P     + T M Y+SGT+G PKG+   L  +   T +
Sbjct: 136 VGYA----------EAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPL 185

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                    +      D VYLS  PL H
Sbjct: 186 PLTAFLQRLW--GFRSDMVYLSPAPLYH 211

Length = 511

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 14/109 (12%)

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP----VSVYSELRLEEVP-- 453
            EF R   C  +  GYG +E          +     G+ G     V++Y+   L E    
Sbjct: 281 AEFSRRFGCQ-VEDGYGSSEGAVIVV---REPGTPPGSIGRGAPGVAIYNPETLTECAVA 336

Query: 454 ---EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
                G     D   GE V   G   F GYY NP+ T E +  G + +G
Sbjct: 337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSG 385

Length = 540

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 37/138 (26%)

Query: 385  LRLVISGGAPLSTEVEEFLRVTCCAF-------LVQGYGLTETCGPTTVCFPDEMC---- 433
            LRLV++G   L  EV +       AF       +++GYG TET    +V  PD +     
Sbjct: 900  LRLVVAGAEKLKPEVAD-------AFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952

Query: 434  --------MVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
                     VG   P V+V    R+  V    +  L     G + + G  +  GY  +P+
Sbjct: 953  RQTGSKEGSVGMPLPGVAV----RI--VDPETFEELPPGEDGLILIGGPQVMKGYLGDPE 1006

Query: 485  LTRESIID----GWFHTG 498
             T E I D    GW+ TG
Sbjct: 1007 KTAEVIKDIDGIGWYVTG 1024

Length = 1146

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ E   Q+ + LRA G  PG RVG+        V A+ A        VPL  +   
Sbjct: 14  SYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSYPA 73

Query: 138 GAVNFILDHAE 148
             + ++L+ AE
Sbjct: 74  ERLQYMLEDAE 84

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 47/209 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
              V  T++++   + Q+ +     G   G  V + G N P+ + A  A        +PL
Sbjct: 25  NDEVL-TWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L    +  +L    +DF  V        L  +            F++LT+       
Sbjct: 84  NPQLPQPLLEELLPSLTLDFALV--------LEGENT----------FSALTS------- 118

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS- 250
                       LHL  V     +  QP  + T+  TSG++G PK  V T +  A   S 
Sbjct: 119 ------------LHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQ--AHLASA 164

Query: 251 -GVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            GV L L  F    T  D +L  LPL H+
Sbjct: 165 EGV-LSLMPF----TAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 31/179 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++++ EV    SALRA G   G RV IY     + V AM AC  +  I   ++     
Sbjct: 85  TYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFAS 144

Query: 138 GAVNFILDHAEIDFVFVQDK-----KV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            ++   +D A    +   D      KV   K LL      AQ     V           +
Sbjct: 145 HSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHV-----------L 193

Query: 190 AVQTGIKP----------YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
            V  G+ P          Y+     H      +E L  +      I+YTSGT+G PKGV
Sbjct: 194 LVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWL--ESNEPSYILYTSGTTGKPKGV 250

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +++ E+ +   +    L A G  PG  V +   N   + EA  A   L    VP      
Sbjct: 12  RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP------ 65

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQ-KEMAVQTG 194
              VN+     EI ++  +D   + L++  D        +    T L+     E+A    
Sbjct: 66  ---VNWHFKPEEIAYIL-EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYR 121

Query: 195 IKPYS---------WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           I P           W+ +L   +  +   +P QP ++   +YTSGT+G PKGV
Sbjct: 122 ISPALLTPPAGAIDWEGWLAQQEPYDGPPVP-QPQSM---IYTSGTTGHPKGV 170

Length = 509

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 25/203 (12%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V  + + L A G  P  RV +   N    V A+ A + L  +         P
Sbjct: 30  TYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAV---------P 80

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +N  L  AEI  +  + +    +++ D +    +        + A      V  G  P
Sbjct: 81  ALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDL--VGLGE-P 137

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL- 256
            S    +        E  P +P     + YTSGT+G PKG V+      + V    LF+ 
Sbjct: 138 ESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRV----LFMS 185

Query: 257 DQFEDKMTVDDVYLSFLPLAHIL 279
            Q   +    +V L  +PL H++
Sbjct: 186 TQAGLRHGRHNVVLGLMPLYHVI 208

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 24/177 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           T+ E+  +V  + +ALRA G  PG RV  Y  N PQ V AM A  ++  I   C P +  
Sbjct: 116 TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILD---HAEIDFVFVQD--------KKVKELLSPDCRSAQRLRVMVCFTSLT 183
                   +LD     E   +F  D           ++ ++   +    LR +V    L 
Sbjct: 174 ----GARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLG 229

Query: 184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF-NICTIMYTSGTSGDPKGVV 239
             + E     G      ++F    +  E+      PF +   I+++SGT+G PK +V
Sbjct: 230 PRETEAPKIDG--ALDLEDFTAAAQAAELV-FEQLPFDHPLWILFSSGTTGLPKCIV 283

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 41.8 bits (99), Expect = 7e-04
 Identities = 39/158 (24%), Positives = 53/158 (33%), Gaps = 47/158 (29%)

Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGLTETC----------G 422
              R+  +G  P+  + +E F       F   G         YGL E            G
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAE----RFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAG 325

Query: 423 PTTVCFPDEMCMVGTAGP-----------VSVYSELRLEEV----PEMGYSPLDDPPCGE 467
           P  +    +    G A             VS    L   EV    PE    PL D   GE
Sbjct: 326 PVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVDPE-TRRPLPDGEVGE 384

Query: 468 VCVRGKTLFSGYYKNPDLTRESII-------DGWFHTG 498
           + VRG ++ +GY+  P+ T E+          GW  TG
Sbjct: 385 IWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTG 422

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 41.8 bits (99), Expect = 8e-04
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E+Y EV +  + L++ G + G RV IY    P+   AM AC
Sbjct: 80  TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 18/64 (28%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS------------- 271
           ++YTSG++G PKGV ++H  +  F+  +          +   D  L+             
Sbjct: 98  VIYTSGSTGKPKGVEVSHRALVNFLLSM-----ARRPGLGASDRLLAVTTISFDISVLEL 152

Query: 272 FLPL 275
            LPL
Sbjct: 153 LLPL 156

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 41/174 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E+V+ + + LR  G +PG  V +     P+ V        L+L    L+  +  
Sbjct: 485 SYREMREQVVALANLLRERGVKPGDSVAV---ALPRSVF-------LTLA---LHAIVEA 531

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM------VCFTSLTAEQKEMAV 191
           GA    LD                   PD     RL++M          +   +    A 
Sbjct: 532 GAAWLPLDTGY----------------PD----DRLKMMLEDARPSLLITTADQLPRFAD 571

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
              +    ++  L       +     QP +   I++TSG++G PKGV++    I
Sbjct: 572 VPDLTSLCYNAPLAPQGAAPL--QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAI 623

Length = 1296

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E+ EE  +  + L+  G   G RV +     P+    +  C  L  + +P    LG
Sbjct: 1   WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           P  + + L+ A    +                       ++ FTS T    +M + T
Sbjct: 61  PKDIRYRLERAGARAIVTSADDP---------------ALLYFTSGTTGLPKMVLHT 102

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY E+ E   ++ + L A G   G  V +YG   P    A+ AC
Sbjct: 18  TYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILAC 61

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 23/71 (32%), Positives = 34/71 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ +   ++ +ALR  G E G RVG+Y    P+   A  A   L  + VPL    GP
Sbjct: 8   TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67

Query: 138 GAVNFILDHAE 148
            AV   L  + 
Sbjct: 68  DAVEHRLRDSG 78

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 62/296 (20%), Positives = 100/296 (33%), Gaps = 67/296 (22%)

Query: 214  ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
             +   P N+  ++YTSG++G PKG    H  +   V+ +    + ++  ++  DV L F 
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGAL---VNRLCATQEAYQ--LSAADVVLQFT 1766

Query: 274  PLAHILDRVIEEYFFR--RGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
              A   D  + E F+    GA +       H D   L   +   + T L  VP + +++ 
Sbjct: 1767 SFA--FDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL 1824

Query: 328  EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
            + + + +E    LRR +                   EA  +    A R    RL      
Sbjct: 1825 Q-MDEQVEHPLSLRRVVCGG----------------EALEVE---ALRPWLERLPDT--- 1861

Query: 388  VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC-----GPTTVCFPDEMCMVGTAGPVS 442
                                   L   YG TET              +    V    P++
Sbjct: 1862 ----------------------GLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIA 1899

Query: 443  VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
              S   L+       +P+     GE+ + G  L  GY   P LT E  +   F T 
Sbjct: 1900 NLSTYILDA----SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTV 1951

Length = 3956

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 10/122 (8%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP--DEMCMVGTAGPVS 442
           LRLV  GG+        F+  T      Q YGL+ET G T +C P  D   +   AG V 
Sbjct: 288 LRLVGYGGSRAIAADVRFIEATGVR-TAQVYGLSET-GCTALCLPTDDGSIVKIEAGAVG 345

Query: 443 -VYSELRLEEVPEMGYSPL-----DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH 496
             Y  + +      G  P           G + ++      GY+ NP+ T E +IDGW +
Sbjct: 346 RPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVN 405

Query: 497 TG 498
           TG
Sbjct: 406 TG 407

Length = 540

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHE--TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               +YTSGT+G PK  +++H     A  V G    L         DDV    LPL H
Sbjct: 83  PAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKP-------DDVLYLCLPLYH 133

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 39/209 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++      I +AL+A  A  G R  +   + P +V A   C    +I VP Y    P
Sbjct: 42  SYRDLDLRARTIAAALQAR-ASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP---P 97

Query: 138 GAVN--------FILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            +           I+  AE   +         LL  +  +A     ++C  +L     E 
Sbjct: 98  ESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAE- 156

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPP-QPFNICTIMYTSGTSGDPKGVVLTHETIATF 248
                    +W E             P  QP +I  + YTSG++  PKGV ++H      
Sbjct: 157 ---------AWQE-------------PALQPDDIAFLQYTSGSTALPKGVQVSH---GNL 191

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
           V+   L    F   +  DDV +S+LPL H
Sbjct: 192 VANEQLIRHGFGIDLNPDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 45/199 (22%)

Query: 93  LRASGA------EPGCRVGIYGANCPQWVE-------AMEACNALSLICVPLYDTLGPGA 139
            RA GA      +PG RV I     PQ ++       A+ A      I VPL+D   PG 
Sbjct: 65  NRAVGARLQQVTKPGDRVAIL---APQNLDYLIAFFGALYAGR----IAVPLFDPAEPGH 117

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199
           V  +  HA +D     D     +L+    SA+ +R    F +  A+++   +     P  
Sbjct: 118 VGRL--HAVLD-----DCTPSAILTTT-DSAEGVRKF--FRARPAKERPRVIAVDAVPDE 167

Query: 200 WDEFLHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
                    V    + P      I  + YTSG++  P GV +TH  + T V  V   L+ 
Sbjct: 168 ---------VGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEG 218

Query: 259 FEDKMTVDDVYLSFLPLAH 277
            E    V     S+LP  H
Sbjct: 219 QEGDRGV-----SWLPFFH 232

Length = 631

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            Y E+     ++  AL   G  P   VG+      + V A+ A        VPL D   P
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPL-DPEYP 596

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE     ++D  V+ LLS           +     L A  + + +    +P
Sbjct: 597 ---------AERLAYMLEDSGVQLLLSQ--------SHLGRKLPLAAGVQVLDLD---RP 636

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            +W E    G   E       P N+  ++YTSG++G PKG    H  ++  +
Sbjct: 637 AAWLE----GYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRL 684

Length = 5163

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 40.1 bits (95), Expect = 0.003
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E++ EV +  +AL++ G + G RV IY    P+   AM AC
Sbjct: 100 TYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143

Length = 637

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 30/173 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ E+  ++ + ++         + +YG   P  + A           +P+ DT  P
Sbjct: 27  TYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV-DTSIP 85

Query: 138 GA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              +  I++ A  + V          LS D    Q +         T    E A  +G  
Sbjct: 86  SERIEMIIEAAGPELVIH-----TAELSIDAVGTQII---------TLSALEQAETSGGP 131

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
                 F H  K ++         N   I YTSG++G+PKGV ++H+ + +F 
Sbjct: 132 V----SFDHAVKGDD---------NYYII-YTSGSTGNPKGVQISHDNLVSFT 170

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 20/179 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL---ICVPLYDT 134
           T  E+  +V ++ +AL A G E G  + I   + P  V A+    A+ L   + V + D+
Sbjct: 210 TLSELRSQVSRVANALDALGFEKGDAIAI---DMPMNVHAVIIYLAIILAGCVVVSIADS 266

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKV---KEL-LSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             P  +   L  ++   +F QD  V   K + L      A+  + +V    L A+ K + 
Sbjct: 267 FAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIV----LPADGKSVR 322

Query: 191 VQTGIKPYSWDEFL----HLGKVNEMEILPPQPFNICT-IMYTSGTSGDPKGVVLTHET 244
           V+      SWD+FL     L + +E + +  QP    T I+++SGT+G+PK +  T  T
Sbjct: 323 VKLREGDMSWDDFLARANGLRRPDEYKAVE-QPVEAFTNILFSSGTTGEPKAIPWTQLT 380

Length = 728

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 23/76 (30%), Positives = 37/76 (48%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ E+  ++ + L   G +PG RV       P+ V A+ A   +  I VPL+   GP
Sbjct: 2   SYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFGP 61

Query: 138 GAVNFILDHAEIDFVF 153
            A+ + L H+    V 
Sbjct: 62  KAIEYRLGHSGAKVVV 77

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++   V  +   L  SG  PG RV +   +  ++V A+ A +   L+ VPL D   P
Sbjct: 45  SYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPALP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +   A    V + D        P  R+    R      ++  +         +  
Sbjct: 104 IAEQRVRSQAAGARVVLIDA-----DGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSV-- 156

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI----CTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                  HL    E       P  +      IM+T GT+G PK V  TH  IA+ V  +
Sbjct: 157 -------HLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAI 208

Length = 534

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E++ EV +  + L++ G + G RV IY    P+   AM AC
Sbjct: 90  TYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC 133

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
           +YTSGT+G PK  V++H      + G    L      +T DDV    LPL H
Sbjct: 205 IYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLR-----LTPDDVLYCCLPLYH 251

Length = 600

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	498
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.95
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.94
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.93
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.89
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.84
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.81
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.64
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.59
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.57
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.1
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.41
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	94.81
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	88.43
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	87.82
PLN02620	612	indole-3-acetic acid-amido synthetase	84.19

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=5.7e-70  Score=539.89  Aligned_cols=472  Identities=45%  Similarity=0.748  Sum_probs=423.1

Q ss_pred             CCceecCcC--CCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCC
Q 010878           22 GPVYRNLLA--SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE   99 (498)
Q Consensus        22 ~~~~r~~~~--~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~   99 (498)
                      +.+||+...  .+.++.......|+++.|++.+..+|+.+++-.....+ ..+.|+.+||+|+.+++.+++..|+++|++
T Consensus        53 ~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~  131 (691)
T KOG1256|consen   53 DGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVK  131 (691)
T ss_pred             CCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCC
Confidence            478888888  45556667899999999999999999999998873323 568899999999999999999999999999


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEc-CchhHHhhccccc-ccCCccEEE
Q 010878          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ-DKKVKELLSPDCR-SAQRLRVMV  177 (498)
Q Consensus       100 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~-~~~~~~~vi  177 (498)
                      +++.|+|+.-|++||++...||...|.+++||..++++++++++++.+.+.++|+| ++....+.+.... ..+.++.+|
T Consensus       132 ~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI  211 (691)
T KOG1256|consen  132 EDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII  211 (691)
T ss_pred             CCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE
Confidence            99999999999999999999999999999999999999999999999999999999 5666666665554 367899999


Q ss_pred             EecCCcHHHHHHHhhcCcceeeHHHHHhccccccccC-CCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhh
Q 010878          178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL  256 (498)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~  256 (498)
                      .++......+......++..++|+++...+....... .++.+++.|.|.|||||||.||||++||+|+++.+..+....
T Consensus       212 ~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~  291 (691)
T KOG1256|consen  212 QLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLS  291 (691)
T ss_pred             EecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhh
Confidence            9999998888888888999999999999886655555 478899999999999999999999999999999776543332


Q ss_pred             ccccCC-CCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCCChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHH
Q 010878          257 DQFEDK-MTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (498)
Q Consensus       257 ~~~~~~-~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~  335 (498)
                      ...... ...+|++++.+||.|++....-...++.|+.+.+..+|+..+.+.+++.+||.+.++|.+|+++.+.++.+..
T Consensus       292 ~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~  371 (691)
T KOG1256|consen  292 AAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQ  371 (691)
T ss_pred             hcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHh
Confidence            222222 2347999999999999999998888899999999999999999999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHHH-HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEee
Q 010878          336 ELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG  414 (498)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~  414 (498)
                      +...+++++++++..++. ..+..|.... +++.+|++-|+++++.+|+++|.+++|++|+++++..+++..+|++|+++
T Consensus       372 ~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eG  450 (691)
T KOG1256|consen  372 KSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEG  450 (691)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeec
Confidence            999999999999999998 6678886655 79999999999999999999999999999999999999999999999999


Q ss_pred             eccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCC
Q 010878          415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG  493 (498)
Q Consensus       415 YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dG  493 (498)
                      ||+|||++.++...+.+. ..+++|.|+|++++|++|+++.+....+  ..|||||||++||+|||++|+.|+++| .||
T Consensus       451 YGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDG  527 (691)
T KOG1256|consen  451 YGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDG  527 (691)
T ss_pred             ccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhcccc
Confidence            999999977777776666 4599999999999999999988877776  479999999999999999999999999 999


Q ss_pred             ccccC
Q 010878          494 WFHTG  498 (498)
Q Consensus       494 w~~TG  498 (498)
                      |+|||
T Consensus       528 WLhTG  532 (691)
T KOG1256|consen  528 WLHTG  532 (691)
T ss_pred             ccccc
Confidence            99998

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=7.3e-66  Score=545.15  Aligned_cols=496  Identities=51%  Similarity=0.943  Sum_probs=393.4

Q ss_pred             CcccccccCcccCCCCCCCcCCceecCcCCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHH
Q 010878            2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKE   81 (498)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~e   81 (498)
                      |++-+.++..+....+.|.++.+||+....++++...+.+.|+.++|+++++.+||++|+.+....++..+.+..+||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~e   84 (666)
T PLN02614          5 KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQE   84 (666)
T ss_pred             ceeEEEecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHH
Confidence            45566777777777888999999999987777765556778999999999999999999985310022234456799999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHH
Q 010878           82 VYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE  161 (498)
Q Consensus        82 l~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~  161 (498)
                      |.++++++|++|+++|+++||+|+|+++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+....
T Consensus        85 l~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~  164 (666)
T PLN02614         85 VYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISE  164 (666)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876655


Q ss_pred             hhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEec
Q 010878          162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT  241 (498)
Q Consensus       162 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s  241 (498)
                      +..........++.++.+++.................+++++...............++++++|+|||||||.||||+++
T Consensus       165 ~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lt  244 (666)
T PLN02614        165 LFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS  244 (666)
T ss_pred             HHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEe
Confidence            54332222223566777754322111111111223467888765432211122234678999999999999999999999


Q ss_pred             cHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCCChHhHHHHHhhhCCcEEEecch
Q 010878          242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR  321 (498)
Q Consensus       242 h~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~  321 (498)
                      |.++++.+......+......+..+|++++.+|++|.++....+.++..|+++++.++++..+++.+++++||+++++|+
T Consensus       245 h~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~  324 (666)
T PLN02614        245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPR  324 (666)
T ss_pred             cHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHH
Confidence            99999887665433211112467899999999999999987666678899999988779999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHH
Q 010878          322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE  401 (498)
Q Consensus       322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~  401 (498)
                      +++++.+.+.......+.+.+.++.++.+++...+..+.......+..+.+.++.+++.++++||.+++||+++++++. 
T Consensus       325 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~-  403 (666)
T PLN02614        325 VLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVE-  403 (666)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHH-
Confidence            9999998777666666667777777777777766665555555667788888999999988899999999999998764 


Q ss_pred             HHHHhc-CCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCccccc
Q 010878          402 FLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  480 (498)
Q Consensus       402 ~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~  480 (498)
                      +|.+.+ +++++++||+||+++.++...+.+....+++|+|+||++++|+|+++++..+++.|+.|||+|+||+++.|||
T Consensus       404 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~  483 (666)
T PLN02614        404 SFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYY  483 (666)
T ss_pred             HHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCccccccc
Confidence            455555 5899999999999876655444333345899999999999999855554455666799999999999999999


Q ss_pred             CCchhhhhhccCCccccC
Q 010878          481 KNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       481 ~~~~~~~~~f~dGw~~TG  498 (498)
                      ++|+.|++.|.||||+||
T Consensus       484 ~~pe~T~~~f~dGw~~TG  501 (666)
T PLN02614        484 KREDLTKEVLIDGWLHTG  501 (666)
T ss_pred             CCHHHhhhhhccCCcccc
Confidence            999999999999999998

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=8.5e-65  Score=536.47  Aligned_cols=498  Identities=79%  Similarity=1.344  Sum_probs=407.5

Q ss_pred             CCcccccccCcccCCCCCCCcCCceecCcCCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHH
Q 010878            1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYK   80 (498)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~   80 (498)
                      ||-+..++.+......++|.++.+||+....+.++..++.++|+.++|.+.++++|+++|+.+....++..+.+..+||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~   80 (660)
T PLN02430          1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYK   80 (660)
T ss_pred             CCceeeeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHH
Confidence            89999888766655457889999999988777776666788999999999999999999997541112334456678999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH
Q 010878           81 EVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK  160 (498)
Q Consensus        81 el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~  160 (498)
                      |+.++++++|..|.+.|+++||+|+|+++|+++|+++.+||+++|++++|+++.++++++.++++.++++++|++.....
T Consensus        81 el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~  160 (660)
T PLN02430         81 EVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK  160 (660)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876543


Q ss_pred             HhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEe
Q 010878          161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL  240 (498)
Q Consensus       161 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~  240 (498)
                      ...+......+.++.++.+++.................+|++++..+...+....+..++++++++|||||||.||||++
T Consensus       161 ~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~l  240 (660)
T PLN02430        161 ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL  240 (660)
T ss_pred             HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEe
Confidence            33222222234567788876543221111111233456788887654332222334468899999999999999999999


Q ss_pred             ccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCCChHhHHHHHhhhCCcEEEecc
Q 010878          241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (498)
Q Consensus       241 sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P  320 (498)
                      +|+++++.+.............+..+|++++.+|++|.++....+.++..|+++++...++..+++.+++++||++.++|
T Consensus       241 th~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP  320 (660)
T PLN02430        241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (660)
T ss_pred             ecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecH
Confidence            99999988776533221111246789999999999999999877777899999988877899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHH
Q 010878          321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE  400 (498)
Q Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~  400 (498)
                      .+++++.+.........++.++.+++++.+.+..++..+......++.++.+-+++++..++++||.+++||+++++++.
T Consensus       321 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~  400 (660)
T PLN02430        321 RVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE  400 (660)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH
Confidence            99999999888888888888999999999999999887765555677788889999999999999999999999999997


Q ss_pred             HHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCccccc
Q 010878          401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  480 (498)
Q Consensus       401 ~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~  480 (498)
                      ++++...++.++++||+||+++.++...+.....++++|+|.|+++++|+|+++.+..+.+.+..|||+|+|++++.|||
T Consensus       401 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~  480 (660)
T PLN02430        401 EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY  480 (660)
T ss_pred             HHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCcccccc
Confidence            77765445789999999999987776655444446899999999999999855555456666678999999999999999


Q ss_pred             CCchhhhhhccCCccccC
Q 010878          481 KNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       481 ~~~~~~~~~f~dGw~~TG  498 (498)
                      ++++.|++.|.||||+||
T Consensus       481 ~~~e~t~~~~~dGw~~TG  498 (660)
T PLN02430        481 KNPELTEEVMKDGWFHTG  498 (660)
T ss_pred             CChHHhhhhhhccceecc
Confidence            999999999999999998

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.7e-64  Score=533.64  Aligned_cols=483  Identities=49%  Similarity=0.897  Sum_probs=388.9

Q ss_pred             CCCCCCCcCCceecCcCCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHH
Q 010878           14 GKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL   93 (498)
Q Consensus        14 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L   93 (498)
                      .+.+.|.++.+||+....+.+...++...|+.++|.+.++++|+++|+......++..+.++++||+||.++++++|.+|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L   94 (660)
T PLN02861         15 ATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAI   94 (660)
T ss_pred             CCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHH
Confidence            45577899999999988887766677888999999999999999999975311133345677899999999999999999


Q ss_pred             HHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCc
Q 010878           94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL  173 (498)
Q Consensus        94 ~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~  173 (498)
                      .++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++......+..........+
T Consensus        95 ~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l  174 (660)
T PLN02861         95 RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNL  174 (660)
T ss_pred             HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999998876655544332222246


Q ss_pred             cEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhh
Q 010878          174 RVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD  253 (498)
Q Consensus       174 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~  253 (498)
                      +.++.+++.................+++++...... .....+..++++++|+|||||||.||||+++|.++++.+....
T Consensus       175 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~  253 (660)
T PLN02861        175 KTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL-DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTD  253 (660)
T ss_pred             EEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcc-cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHH
Confidence            677777654321111111112334578777654321 1122334679999999999999999999999999998877654


Q ss_pred             hhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCCChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHH
Q 010878          254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA  333 (498)
Q Consensus       254 ~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~  333 (498)
                      ..+......+..+|++++.+|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|++++.+.+.+...
T Consensus       254 ~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~  333 (660)
T PLN02861        254 HLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQK  333 (660)
T ss_pred             hccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHH
Confidence            43311111246789999999999999988766789999999988779999999999999999999999999999888888


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceE
Q 010878          334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLV  412 (498)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~l~  412 (498)
                      ....+.+++.+++++.+++...+..+.......+..+.++++++++.++++||.+++||+++++++.+ |.+.++. .++
T Consensus       334 ~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~  412 (660)
T PLN02861        334 ISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLS  412 (660)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCee
Confidence            88888888999999999888877766544445677888999999999999999999999999999865 5555664 799


Q ss_pred             eeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccC
Q 010878          413 QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID  492 (498)
Q Consensus       413 ~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~d  492 (498)
                      ++||+||+++.++..........+++|+|+||++++|+|+++.+......++.|||+|+||+++.|||++|+.|++.|.|
T Consensus       413 ~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~d  492 (660)
T PLN02861        413 QGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLID  492 (660)
T ss_pred             EecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhhc
Confidence            99999999876665444333345899999999999999844433223334468999999999999999999999999999


Q ss_pred             CccccC
Q 010878          493 GWFHTG  498 (498)
Q Consensus       493 Gw~~TG  498 (498)
                      |||+||
T Consensus       493 Gw~~TG  498 (660)
T PLN02861        493 GWFHTG  498 (660)
T ss_pred             cCcccC
Confidence            999998

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-62  Score=520.15  Aligned_cols=472  Identities=25%  Similarity=0.376  Sum_probs=373.5

Q ss_pred             cccccccCcccCCCCCCCcCCceecCcCCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHH
Q 010878            3 IFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEV   82 (498)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el   82 (498)
                      .|.+.++.....     .++++||.....+.  .......++.++|.+.++++|+++|+++.   + .+..|+.+||+||
T Consensus        29 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el   97 (746)
T PTZ00342         29 GYSEICEKATNE-----NESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNF   97 (746)
T ss_pred             eeeeEecCCCCC-----CCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHH
Confidence            455666655554     77889997776655  44466889999999999999999999753   2 1223678999999


Q ss_pred             HHHHHHHHHHHHHc---CCCCC-----------CEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcC
Q 010878           83 YEEVLQIVSALRAS---GAEPG-----------CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAE  148 (498)
Q Consensus        83 ~~~~~~lA~~L~~~---gv~~g-----------~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~  148 (498)
                      .+++.++|++|.+.   |+++|           |+|+|+++|+++|+++.+||+++|++++|+++.++++++.++|++++
T Consensus        98 ~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~  177 (746)
T PTZ00342         98 FKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETK  177 (746)
T ss_pred             HHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCC
Confidence            99999999999974   99998           99999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEcCchhHHhhcccccccCCccEEEEecCCcHH-------------------H-----------------------
Q 010878          149 IDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAE-------------------Q-----------------------  186 (498)
Q Consensus       149 ~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~-------------------~-----------------------  186 (498)
                      ++++|++.+..+.+.+... ..+.++.+++++.....                   .                       
T Consensus       178 ~~~lv~~~~~~~~l~~~~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (746)
T PTZ00342        178 LEWLCLDLDLVEGLLERKN-ELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLG  256 (746)
T ss_pred             CCEEEEcHHHHHHHHHhhc-cCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999998877776655433 34677888888653210                   0                       


Q ss_pred             ---------------HHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhh
Q 010878          187 ---------------KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG  251 (498)
Q Consensus       187 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~  251 (498)
                                     .............++++.... .......+..++++++|+|||||||.||||++||+|+++.+..
T Consensus       257 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~  335 (746)
T PTZ00342        257 PLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNK-TTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVP  335 (746)
T ss_pred             ccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhc-ccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHH
Confidence                           000000111223444444321 1112233456799999999999999999999999999998866


Q ss_pred             hhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCCChHhHHHHHhhhCCcEEEecchHHHHHHHHHH
Q 010878          252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK  331 (498)
Q Consensus       252 ~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~  331 (498)
                      .....   .......|++++.+|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.+++++.+.+.
T Consensus       336 ~~~~~---~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~  412 (746)
T PTZ00342        336 LCKHS---IFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIM  412 (746)
T ss_pred             Hhhcc---cccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHH
Confidence            54321   001235689999999999999988888899999999987799999999999999999999999999999888


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHH--HHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC
Q 010878          332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL--AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA  409 (498)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~  409 (498)
                      ......+.+.+.+++++...+.+... |.    .++.++.+  -++.+++.++++||.+++||+++++++.++|+..+|+
T Consensus       413 ~~~~~~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~  487 (746)
T PTZ00342        413 TEINNLPPLKRFLVKKILSLRKSNNN-GG----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNV  487 (746)
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHhhc-CC----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCC
Confidence            87777788888888888777655332 21    12333433  4788899999999999999999999999999998999


Q ss_pred             ceEeeeccccCcccccccCCCCccccCccccCc-CCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhh
Q 010878          410 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE  488 (498)
Q Consensus       410 ~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~  488 (498)
                      +++++||+||+++.++...... ..++++|+|+ |+++++|+|+++.....  ..+.|||+++||+++.|||++|+.|++
T Consensus       488 ~i~~gYGlTEt~~~~~~~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~~~~--~~~~GEl~vrGp~v~~GY~~~pe~T~~  564 (746)
T PTZ00342        488 NYYQGYGLTETTGPIFVQHADD-NNTESIGGPISPNTKYKVRTWETYKATD--TLPKGELLIKSDSIFSGYFLEKEQTKN  564 (746)
T ss_pred             CEEEeeccCcccceeeeccCCC-CCcccccCcCCCcEEEEEecccccccCC--CCCceEEEEecCcccccccCChhhhhh
Confidence            9999999999987776655543 3458999998 99999999844332222  235799999999999999999999999


Q ss_pred             hc-cCCccccC
Q 010878          489 SI-IDGWFHTG  498 (498)
Q Consensus       489 ~f-~dGw~~TG  498 (498)
                      .| .||||+||
T Consensus       565 ~f~~dGW~~TG  575 (746)
T PTZ00342        565 AFTEDGYFKTG  575 (746)
T ss_pred             hcCcCCcccCC
Confidence            99 79999998

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=3e-62  Score=518.79  Aligned_cols=474  Identities=39%  Similarity=0.648  Sum_probs=384.9

Q ss_pred             CCCCCCcCCceecCcCCCCCCC---CCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHH
Q 010878           15 KDGKPSVGPVYRNLLASNGFPS---VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS   91 (498)
Q Consensus        15 ~~~~~~~~~~~r~~~~~~~~~~---~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~   91 (498)
                      +....+.+.+||+......+-+   .++...++.++|+++++.+|+++|+.+....++..+.++.+||+||.++++++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~   93 (651)
T PLN02736         14 EKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGS   93 (651)
T ss_pred             CCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHH
Confidence            3344588999998766644433   3456789999999999999999999542000333345678999999999999999


Q ss_pred             HHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccC
Q 010878           92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ  171 (498)
Q Consensus        92 ~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~  171 (498)
                      +|+++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+..... ..+
T Consensus        94 ~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~-~~~  172 (651)
T PLN02736         94 GLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS-EIP  172 (651)
T ss_pred             HHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhh-cCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999877766554333 335


Q ss_pred             CccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhh
Q 010878          172 RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG  251 (498)
Q Consensus       172 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~  251 (498)
                      .++.++.++..................+++++...............++++++|+|||||||.||||++||++++.++.+
T Consensus       173 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~  252 (651)
T PLN02736        173 SVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAG  252 (651)
T ss_pred             CceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHH
Confidence            66777776543221111111123345678888765432222233456799999999999999999999999999999888


Q ss_pred             hhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCCChHhHHHHHhhhCCcEEEecchHHHHHHHHHH
Q 010878          252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK  331 (498)
Q Consensus       252 ~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~  331 (498)
                      ....+     ++.++|++++.+|++|.+++..++.++..|+++++.+.++..+++.|+++++|+++++|++++.+.+...
T Consensus       253 ~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~  327 (651)
T PLN02736        253 SSLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGIT  327 (651)
T ss_pred             HHhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHH
Confidence            76655     7888999999999999999988888899999999988899999999999999999999999999999888


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCce
Q 010878          332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFL  411 (498)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l  411 (498)
                      ......+.+++.++.++...+...+..+..   ..+.++++.+++++..++++||.+++||+++++++.+++++.+|+++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~  404 (651)
T PLN02736        328 NAVKESGGLKERLFNAAYNAKKQALENGKN---PSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRV  404 (651)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHcCCC---CCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCe
Confidence            888888888888888888777666665421   23456778888888888889999999999999999999998889999


Q ss_pred             EeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCC-CCCCCCCCeEEEecCCCcccccCCchhhhhhc
Q 010878          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  490 (498)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~-~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f  490 (498)
                      +++||+||+++.++...... ...+++|+|+||++++|+|.+++... ....++.|||+|+||+++.|||++++.+++.|
T Consensus       405 ~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~  483 (651)
T PLN02736        405 LEGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVI  483 (651)
T ss_pred             EEEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhh
Confidence            99999999987766555443 34589999999999999983332211 11122479999999999999999999999999


Q ss_pred             -cCCccccC
Q 010878          491 -IDGWFHTG  498 (498)
Q Consensus       491 -~dGw~~TG  498 (498)
                       .||||+||
T Consensus       484 ~~dgw~~TG  492 (651)
T PLN02736        484 DEDGWLHTG  492 (651)
T ss_pred             ccCCCeecc
Confidence             79999998

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=5.6e-63  Score=497.96  Aligned_cols=430  Identities=35%  Similarity=0.602  Sum_probs=349.0

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...++..++.+.++.+|+..++...     ..+.|+.+||+|+.+++.++|.+|++.|+..||+|+|++.|+++|+++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~   88 (613)
T COG1022          14 EIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADL   88 (613)
T ss_pred             hcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4578899999999999998888765     36778999999999999999999999999779999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCC---cHHHHHHHhhc--C
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL---TAEQKEMAVQT--G  194 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~---~~~~~~~~~~~--~  194 (498)
                      ||+.+|++.+|+++..+++++.++|++++++++|++..............++.....+...+.   ...........  .
T Consensus        89 a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (613)
T COG1022          89 AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPD  168 (613)
T ss_pred             HHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhcccccccc
Confidence            999999999999999999999999999999999999976655544443322221111111110   00000000000  0


Q ss_pred             cceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCC-CCCCcEEEEec
Q 010878          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLSFL  273 (498)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~~~  273 (498)
                      .....+  ..... ..+....+..++|+|.|+|||||||.||||+++|+|+++++..+...+     . ..++|++++.+
T Consensus       169 ~~~~~~--~~~~~-~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~~LsfL  240 (613)
T COG1022         169 EGISLF--LIDSA-GLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDRVLSFL  240 (613)
T ss_pred             ccchhh--hhccc-ccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcEEEEeC
Confidence            000001  01111 111222456789999999999999999999999999999999998877     5 88999999999


Q ss_pred             ChHHHHHHHHHH-HHHHcCcEEEEeCCChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 010878          274 PLAHILDRVIEE-YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (498)
Q Consensus       274 pl~h~~g~~~~~-~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (498)
                      |+.|++...+.. ..++.|.+ ++...++..+...+++++||.++++|.+|+.+-+.+.++..+.+..++.++.++.+.+
T Consensus       241 PlaHi~Er~~~~~~~~~~g~~-~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~  319 (613)
T COG1022         241 PLAHIFERAFEGGLALYGGVT-VLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVA  319 (613)
T ss_pred             cHHHHHHHHHHHHHHhhcceE-EEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            999999998743 34444444 4445599999999999999999999999999999999999999999999999998776


Q ss_pred             HHHHhccc---CCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCC
Q 010878          353 LAWMNMGY---KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP  429 (498)
Q Consensus       353 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~  429 (498)
                      ........   .........|++.|+++++.+|.++|++++||+++++++..+|+.. |++++++||+|||+++++++++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~  398 (613)
T COG1022         320 YKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPP  398 (613)
T ss_pred             HHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccc
Confidence            54332111   1111222389999999999999999999999999999999999986 8999999999999999999988


Q ss_pred             CCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          430 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       430 ~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      +.... +++|+|+|++|+||+|             .|||+||||+||+|||++|+.|+++| .||||+||
T Consensus       399 ~~~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TG  454 (613)
T COG1022         399 DRFVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTG  454 (613)
T ss_pred             cCccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccC
Confidence            77666 9999999999999999             59999999999999999999999999 79999998

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=8.8e-62  Score=460.52  Aligned_cols=478  Identities=35%  Similarity=0.642  Sum_probs=414.2

Q ss_pred             ccCCCCCCCcCCceecCcCCCCCCCCC-CCcccHHHHHHHHHHcCCCCCceeecccc--------CCC------CCCcee
Q 010878           12 KEGKDGKPSVGPVYRNLLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFV--------DGK------FGPYVW   76 (498)
Q Consensus        12 ~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~tl~~~l~~~~~~~pd~~a~~~~~~~--------d~~------~~~~~~   76 (498)
                      ...+.+.+.++.+||+....+++-+.+ +...|+++++++.++.+.++.++-...+.        ||+      =+.+..
T Consensus        10 ~~~~~~n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w   89 (678)
T KOG1180|consen   10 KAKPAANEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKW   89 (678)
T ss_pred             ccCCCCCCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceee
Confidence            344555779999999999877776655 78899999999999999999998665221        221      244678


Q ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEc
Q 010878           77 KTYKEVYEEVLQIVSALRASGAEPGCR-VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ  155 (498)
Q Consensus        77 ~Ty~el~~~~~~lA~~L~~~gv~~g~~-V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~  155 (498)
                      +||.|+..++.++|++|.++|++++++ ++|+++.+.+|+++++||++.+..+|-+...+..+.+.+-|+.++++.+|++
T Consensus        90 ~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~  169 (678)
T KOG1180|consen   90 MSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTD  169 (678)
T ss_pred             ecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeC
Confidence            999999999999999999999997777 9999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHhhcccccccCCccEEEEecCCcHHHHHHH----hhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCC
Q 010878          156 DKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGT  231 (498)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGt  231 (498)
                      .+.+..+..... ....++.+|.+++.+......+    ....+..+++++++..+.+...++.++.++|+|+|+|||||
T Consensus       170 ~~LL~kl~~~l~-~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGS  248 (678)
T KOG1180|consen  170 SELLPKLKAPLK-QAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGS  248 (678)
T ss_pred             HHHHHHHHHHHh-ccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCC
Confidence            999997766554 4489999999995432222111    22457889999999988777666666688999999999999


Q ss_pred             CCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCC----Ch-H----
Q 010878          232 SGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----DL-N----  302 (498)
Q Consensus       232 TG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~----~~-~----  302 (498)
                      ||.||||+++|.|+++.+..+....    ..+.+.|+++..+||.|++.+..-+.+++.|+.+-.-+.    |. .    
T Consensus       249 TG~PKGVml~H~NiVA~~~G~~~~v----~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~k  324 (678)
T KOG1180|consen  249 TGLPKGVMLTHSNIVAGVTGVGENV----PELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKK  324 (678)
T ss_pred             CCCCceEEEecccHHhhhhhhcccC----cccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhcc
Confidence            9999999999999999999886654    267899999999999999999999999999999876532    11 1    


Q ss_pred             hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhC
Q 010878          303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLG  382 (498)
Q Consensus       303 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (498)
                      .---.+...|||++.++|++++++-+.+..+....+.+.+.+|.+++..+...+..   +...++.++.+.|.++|..+|
T Consensus       325 g~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~---~g~~s~~ld~lVFkKIr~~lG  401 (678)
T KOG1180|consen  325 GCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIER---NGPGSPLLDALVFKKIRALLG  401 (678)
T ss_pred             CCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhc---cCCchhhHHHHHHHHHHHHhC
Confidence            11123457999999999999999999999999999999999999999999888873   345789999999999999999


Q ss_pred             CceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCC
Q 010878          383 GRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD  462 (498)
Q Consensus       383 ~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~  462 (498)
                      .+||++++||+|++++..|++.-.+++++.++||.||+++..+...+.+... +.+|.|++.++++++|++|++..+...
T Consensus       402 G~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~EgGY~~~~~  480 (678)
T KOG1180|consen  402 GNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWEEGGYFAKNK  480 (678)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhhhcCccCCCC
Confidence            9999999999999999999999989999999999999999988888777666 899999999999999999998887764


Q ss_pred             CCCCeEEEecCCCcccccCCchhhhhhc-c-CC--ccccC
Q 010878          463 PPCGEVCVRGKTLFSGYYKNPDLTRESI-I-DG--WFHTG  498 (498)
Q Consensus       463 ~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~-dG--w~~TG  498 (498)
                      -..||||++|+++..||++|++.|++.| . ||  ||+||
T Consensus       481 PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TG  520 (678)
T KOG1180|consen  481 PPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTG  520 (678)
T ss_pred             CCCceEEecCCccChhhhCChhhhhhhceecCCcEEEecc
Confidence            4689999999999999999999999999 4 99  99998

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=8.1e-60  Score=501.46  Aligned_cols=473  Identities=33%  Similarity=0.565  Sum_probs=374.1

Q ss_pred             CcCCceecCcCCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeecccc--------CC------CCCCceeeeHHHHHHH
Q 010878           20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV--------DG------KFGPYVWKTYKEVYEE   85 (498)
Q Consensus        20 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~--------d~------~~~~~~~~Ty~el~~~   85 (498)
                      .+..+||+...........+...|+.++|.++++.+||++|+......        ++      ..+.|+.+||+||.++
T Consensus        36 ~~~~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~  115 (696)
T PLN02387         36 EPGYAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFER  115 (696)
T ss_pred             CCCCceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHH
Confidence            555579999866434444567899999999999999999999532100        11      1255678999999999


Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcc
Q 010878           86 VLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP  165 (498)
Q Consensus        86 ~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  165 (498)
                      ++++|++|.++|+++||+|+|+++|+++|+++++||+++|++++|+++.++++++.++++.++++++|++.+....+.+.
T Consensus       116 v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~  195 (696)
T PLN02387        116 VCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDI  195 (696)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998777666544


Q ss_pred             cccccCCccEEEEecCCcHHHHHH-HhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHh
Q 010878          166 DCRSAQRLRVMVCFTSLTAEQKEM-AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET  244 (498)
Q Consensus       166 ~~~~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~  244 (498)
                      .. ..+.++.++.+++........ .........+++++...+...........++++++|+|||||||.||||+++|++
T Consensus       196 ~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~  274 (696)
T PLN02387        196 SS-QLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGN  274 (696)
T ss_pred             hh-ccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHH
Confidence            32 345678888887643221110 0112234557888776543322233344689999999999999999999999999


Q ss_pred             HHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCC----C-----hHhHHHHHhhhCCcE
Q 010878          245 IATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----D-----LNALRDDLMELKPTL  315 (498)
Q Consensus       245 l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~----~-----~~~~~~~i~~~~~t~  315 (498)
                      +++++......+    ..+..+|++++.+|++|++++...+.++..|+++.+...    +     +..++..+++++||+
T Consensus       275 l~~~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~  350 (696)
T PLN02387        275 IVATVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTL  350 (696)
T ss_pred             HHHHHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcE
Confidence            999887764432    146789999999999999999887777888888765332    1     234566899999999


Q ss_pred             EEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccc--CCCCchhhHHHHHHHHHHHHhCCceeEEEEcCC
Q 010878          316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY--KQREASPLADLLAFRKVKARLGGRLRLVISGGA  393 (498)
Q Consensus       316 l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~  393 (498)
                      ++++|.+++++.+.........+.+.+.+++++...+...+....  ........++.+.++.++..+++++|.+++||+
T Consensus       351 ~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGa  430 (696)
T PLN02387        351 MTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGA  430 (696)
T ss_pred             EEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCC
Confidence            999999999999887777777777888888888877766553210  012356678999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCC-CCCCCCeEEEec
Q 010878          394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRG  472 (498)
Q Consensus       394 ~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~-~~~~~Gei~v~g  472 (498)
                      ++++++.++++..+|++++++||+||+++.++....... ..+++|+|+|+++++|+|+++++.... ..++.|||+|+|
T Consensus       431 pl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrG  509 (696)
T PLN02387        431 PLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGG  509 (696)
T ss_pred             CCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEecc
Confidence            999999998888889999999999999887776654433 348999999999999999555543322 223579999999


Q ss_pred             CCCcccccCCchhhhhhc-c--CC--ccccC
Q 010878          473 KTLFSGYYKNPDLTRESI-I--DG--WFHTG  498 (498)
Q Consensus       473 ~~v~~gY~~~~~~~~~~f-~--dG--w~~TG  498 (498)
                      |+++.|||++|+.|++.| .  ||  ||+||
T Consensus       510 p~v~~GY~~~pe~T~~~f~~d~~G~~W~~TG  540 (696)
T PLN02387        510 PSVTLGYFKNQEKTDEVYKVDERGMRWFYTG  540 (696)
T ss_pred             CcccchhcCCHHHHhhhhccccCCCceeecC
Confidence            999999999999999998 2  35  99998

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.7e-58  Score=490.94  Aligned_cols=466  Identities=30%  Similarity=0.517  Sum_probs=364.6

Q ss_pred             CcCCceecCcCCC----CCCCCCCCcccHHHHHHHHHHcCCCCCceeecccc----------CCC--------CCCceee
Q 010878           20 SVGPVYRNLLASN----GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV----------DGK--------FGPYVWK   77 (498)
Q Consensus        20 ~~~~~~r~~~~~~----~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~----------d~~--------~~~~~~~   77 (498)
                      ..+.+||.....+    .+....+...|+.++|.+.++.+||++|+.+....          ++.        .+.++.+
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  122 (700)
T PTZ00216         43 NASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYI  122 (700)
T ss_pred             CCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEe
Confidence            4567888765443    23333345679999999999999999999874100          111        1245899


Q ss_pred             eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCc
Q 010878           78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK  157 (498)
Q Consensus        78 Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~  157 (498)
                      ||+||.++++++|+.|+++|+++||+|+|+++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++..
T Consensus       123 Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~  202 (700)
T PTZ00216        123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGK  202 (700)
T ss_pred             EHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccc--cccc-cCCCCCCCCeEEEEeccCCCCC
Q 010878          158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEM-EILPPQPFNICTIMYTSGTSGD  234 (498)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~a~i~~TSGtTG~  234 (498)
                      ....+.+...........++.+++.....    ........+|+++...+.  .... ...+..++++++++|||||||.
T Consensus       203 ~~~~l~~~~~~~~~~~~~ii~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~  278 (700)
T PTZ00216        203 NVPNLLRLMKSGGMPNTTIIYLDSLPASV----DTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGD  278 (700)
T ss_pred             HHHHHHHhhhhccCCceEEEEECCCcccc----ccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCc
Confidence            66555433322111123556665432110    112334668888876541  1111 1233467899999999999999


Q ss_pred             CceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCCChHhHHH-------H
Q 010878          235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD-------D  307 (498)
Q Consensus       235 pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~-------~  307 (498)
                      ||||+++|+|+++.+.++...+......+..+|++++++|++|.+++......+..|+++.+.  ++..+.+       .
T Consensus       279 PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~~~~  356 (700)
T PTZ00216        279 PKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARPHGD  356 (700)
T ss_pred             CcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccccch
Confidence            999999999999988776543211111246789999999999999987766668888877663  5555555       6


Q ss_pred             HhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeE
Q 010878          308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL  387 (498)
Q Consensus       308 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~  387 (498)
                      +++++||++.++|.+++++.+.........+.+++.++.++...+.+.+..|.    ..+.++.+.++.++..+++++|.
T Consensus       357 l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~~lr~  432 (700)
T PTZ00216        357 LTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGGRVRA  432 (700)
T ss_pred             HHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCCcEEE
Confidence            88999999999999999999988877777778888888888887777666542    34567888899999999999999


Q ss_pred             EEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCe
Q 010878          388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  467 (498)
Q Consensus       388 i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Ge  467 (498)
                      +++||+++++++.++++..++ +++++||+||+++.++....... ..+++|+|+||++++|+| +++.......++.||
T Consensus       433 i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~~~GE  509 (700)
T PTZ00216        433 MLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPEPRGE  509 (700)
T ss_pred             EEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCCCCce
Confidence            999999999999998888778 99999999999877666554433 348999999999999999 554333333446799


Q ss_pred             EEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          468 VCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       468 i~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      |+|+|++++.|||++|+.|++.| .||||+||
T Consensus       510 L~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TG  541 (700)
T PTZ00216        510 ILLRGPFLFKGYYKQEELTREVLDEDGWFHTG  541 (700)
T ss_pred             EEEcCCcccchhcCChhHhhhhccccCCeecc
Confidence            99999999999999999999999 89999998

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=9.3e-57  Score=419.64  Aligned_cols=398  Identities=22%  Similarity=0.306  Sum_probs=339.7

Q ss_pred             CCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 010878           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (498)
Q Consensus        32 ~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~  111 (498)
                      .+-.+.+-...|+++.++-.+++.||+.|+++.   ...    .++||+||.+.++.+|+.|.++|+++||+|++..||+
T Consensus        40 ~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~---~eg----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~  112 (596)
T KOG1177|consen   40 HGCSQIPLDSETIGQLLETTTERVPDKEAAVFD---HEG----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNS  112 (596)
T ss_pred             CCCCCCCcccccHHHHHHHHhhccCcceEEEEe---ecc----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCCh
Confidence            444567788999999999999999999999986   222    5699999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh-----HHhhccc------------ccccCCcc
Q 010878          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPD------------CRSAQRLR  174 (498)
Q Consensus       112 ~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~------------~~~~~~~~  174 (498)
                      .+|++.++||.++|.+.+++||.+...++++.|+..+++++|+...+.     +.+++..            .+.++.+.
T Consensus       113 ~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lt  192 (596)
T KOG1177|consen  113 YEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELT  192 (596)
T ss_pred             HHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccce
Confidence            999999999999999999999999999999999999999999987532     2222222            23346677


Q ss_pred             EEEEecCCcHHHHHHHhhcCcceeeHHHHHhcccccc-----ccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHh
Q 010878          175 VMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE-----MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV  249 (498)
Q Consensus       175 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~  249 (498)
                      .+|..+++..         ......++|++.......     .......|++++.|.|||||||.|||+.+||.|++++.
T Consensus       193 hvi~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna  263 (596)
T KOG1177|consen  193 HVILADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNA  263 (596)
T ss_pred             EEEecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhH
Confidence            7777774332         223566777776554322     22234578999999999999999999999999999999


Q ss_pred             hhhhhhhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHH
Q 010878          250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKI  326 (498)
Q Consensus       250 ~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l  326 (498)
                      ......+     ++..++++++..|++|.+|... ++.+|..|++++++..  ++...+++|.++|+|.++++|+++..+
T Consensus       264 ~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dl  338 (596)
T KOG1177|consen  264 RAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDL  338 (596)
T ss_pred             HHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHH
Confidence            9998888     8999999999999999999776 8999999999999764  999999999999999999999999998


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHh
Q 010878          327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT  406 (498)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~  406 (498)
                      ++.                                     +....++++        ++|.++.||+++++++.+.+...
T Consensus       339 ln~-------------------------------------~~~~~~~~s--------~lr~~vigGa~~s~eLlk~iv~~  373 (596)
T KOG1177|consen  339 LNI-------------------------------------PQKQQVDLS--------SLRKGVIGGAPVSPELLKLIVNQ  373 (596)
T ss_pred             hcc-------------------------------------hhhccCchh--------hhhhheeCCCCCCHHHHHHHHHh
Confidence            763                                     333334444        89999999999999999999887


Q ss_pred             cCC-ceEeeeccccCcccccccCCCC--ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCc
Q 010878          407 CCA-FLVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP  483 (498)
Q Consensus       407 ~g~-~l~~~YG~tE~~~~~~~~~~~~--~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~  483 (498)
                      ++. .+..+||+||++.+.++...++  .+...++|+.+++.|.+|+| .+|...|.+  ..||||+||.+++.|||+++
T Consensus       374 ~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg~~  450 (596)
T KOG1177|consen  374 MNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWGEE  450 (596)
T ss_pred             hCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecCCc
Confidence            765 4788999999999888877665  34457999999999999999 899888887  67999999999999999999


Q ss_pred             hhhhhhc-cCCccccC
Q 010878          484 DLTRESI-IDGWFHTG  498 (498)
Q Consensus       484 ~~~~~~f-~dGw~~TG  498 (498)
                      +.|.++. .|.|++||
T Consensus       451 ~kT~eti~~drW~~TG  466 (596)
T KOG1177|consen  451 EKTKETIGNDRWYDTG  466 (596)
T ss_pred             ccchhhcccccceecC
Confidence            9999988 89999998

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-56  Score=447.51  Aligned_cols=363  Identities=28%  Similarity=0.417  Sum_probs=298.9

Q ss_pred             eeeeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEE
Q 010878           75 VWKTYKEVYEEVLQIVSALRASG--AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV  152 (498)
Q Consensus        75 ~~~Ty~el~~~~~~lA~~L~~~g--v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v  152 (498)
                      +.+||.|+++++.++|..|.++|  +++||+|++++||+++++++++||..+|++..++||.+.+.++..+++.++++++
T Consensus        44 ~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kii  123 (537)
T KOG1176|consen   44 RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLI  123 (537)
T ss_pred             cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEE
Confidence            58999999999999999999875  8999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee-HHHHHhccccccccCCCCCCCCeEEEEeccCC
Q 010878          153 FVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS-WDEFLHLGKVNEMEILPPQPFNICTIMYTSGT  231 (498)
Q Consensus       153 i~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGt  231 (498)
                      |+|.+....+.+......   ..++++.......   .......... ++.+...... .. ..+...+|++.++|||||
T Consensus       124 f~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~dd~~~il~SSGT  195 (537)
T KOG1176|consen  124 FVDEDFYDKISEATSKLA---LKIIVLTGDEGVI---SISDLVEDLDAFEDLMPEGLP-DG-IRPVSEDDTAAILYSSGT  195 (537)
T ss_pred             EEcCchHHHHHHHHhhcC---CceEEEecccCcc---ccccccccccchhhccccCCC-cc-cccCCCCCeEEEecCCCC
Confidence            999999888766554321   4455554431000   0000001111 3333332211 11 455677999999999999


Q ss_pred             CCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHH-HHHcCcEEEEeCC-ChHhHHHHHh
Q 010878          232 SGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY-FFRRGASVGYYHG-DLNALRDDLM  309 (498)
Q Consensus       232 TG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~-~l~~G~~~~~~~~-~~~~~~~~i~  309 (498)
                      ||.||||++||++++.+........     .+...|+.++.+|++|.+|+...+. ++..|.++++.+. ++..+++.|+
T Consensus       196 Tg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~  270 (537)
T KOG1176|consen  196 TGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIE  270 (537)
T ss_pred             CCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHH
Confidence            9999999999999999987765544     6777999999999999999999776 4666666666666 9999999999


Q ss_pred             hhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEE
Q 010878          310 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI  389 (498)
Q Consensus       310 ~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~  389 (498)
                      +|++|+++++|.++..+++.                                     +...+.+++        ++|.++
T Consensus       271 kykvt~~~~vP~~~~~l~~~-------------------------------------p~~~~~~l~--------sl~~v~  305 (537)
T KOG1176|consen  271 KYKVTHLFLVPPVLNMLAKS-------------------------------------PIVKKYDLS--------SLRSVL  305 (537)
T ss_pred             HhCEEEEEcChHHHHHHhcC-------------------------------------CccCcccCC--------ccEEEE
Confidence            99999999999999998762                                     233444454        999999


Q ss_pred             EcCCCCCHHHHHHHHHhcC-CceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeE
Q 010878          390 SGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV  468 (498)
Q Consensus       390 ~~G~~l~~~~~~~~~~~~g-~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei  468 (498)
                      +||+++++++.++++++++ ..+.++||+||+++.++.+.....++++++|++++|++++|.+ +.|..++.  ++.|||
T Consensus       306 ~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~-e~g~~l~~--~~~GEI  382 (537)
T KOG1176|consen  306 SGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD-ETGVSLGP--NQTGEI  382 (537)
T ss_pred             ecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeC-CCCCCCCC--CCceEE
Confidence            9999999999999999998 8999999999999888877765545679999999999999988 77765555  489999


Q ss_pred             EEecCCCcccccCCchhhhhhcc-CCccccC
Q 010878          469 CVRGKTLFSGYYKNPDLTRESII-DGWFHTG  498 (498)
Q Consensus       469 ~v~g~~v~~gY~~~~~~~~~~f~-dGw~~TG  498 (498)
                      |+||+++++||++||++|++.|. |||||||
T Consensus       383 ~vrg~~imkGY~~NpeaT~~~~~~~GW~~TG  413 (537)
T KOG1176|consen  383 CVRGPQVMKGYLKNPEATKEAFDDDGWFHTG  413 (537)
T ss_pred             EEECcccchhhcCChHHHHhhcccCCccccC
Confidence            99999999999999999999994 4999998

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6.2e-56  Score=458.40  Aligned_cols=389  Identities=29%  Similarity=0.439  Sum_probs=317.1

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ....++.+++.++++.+|+++|+++.   +.. +   .+||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus         8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~-~---~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~   80 (534)
T COG0318           8 TAELTLASLLERAARRNPDRPALIFL---GRG-G---RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF   80 (534)
T ss_pred             cccccHHHHHHHHHHhCCCceEEEEc---CCC-c---eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            45689999999999999999999986   431 1   4999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcce-
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-  197 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-  197 (498)
                      +||+++|++++|+||.+..+++.++++.++++.++++......+..... ..+....+........           .. 
T Consensus        81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~  148 (534)
T COG0318          81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAE-ALPVVLVVLLVGDADD-----------RLP  148 (534)
T ss_pred             HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhc-cCCcceEEEecccccc-----------ccc
Confidence            9999999999999999999999999999999999999874333322221 2122222322222211           00 


Q ss_pred             eeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCC--CCCCcEEEEecCh
Q 010878          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK--MTVDDVYLSFLPL  275 (498)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~--~~~~d~~l~~~pl  275 (498)
                      .+++++...............++++++++|||||||.||||++||+|++.+.......+     .  ++++|++++++|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl  223 (534)
T COG0318         149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPL  223 (534)
T ss_pred             ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecCh
Confidence            24555533221222222225789999999999999999999999999999988887776     6  8999999999999


Q ss_pred             HHHHHHHHHH-HHHHcCcEEEEeC---CChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 010878          276 AHILDRVIEE-YFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (498)
Q Consensus       276 ~h~~g~~~~~-~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (498)
                      +|.+|+...+ ..++.|+++++.+   +++..++..+.++++|+++++|+++..++......                  
T Consensus       224 ~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~------------------  285 (534)
T COG0318         224 FHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKD------------------  285 (534)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccC------------------
Confidence            9999999855 4599999999987   49999999999999999999999999987632211                  


Q ss_pred             HHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC-CceEeeeccccCcccccccCCC
Q 010878          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPD  430 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~l~~~YG~tE~~~~~~~~~~~  430 (498)
                                         ..++.       ++||.+++||+++++++.+++++.|+ ..+++.||+||++.+++.....
T Consensus       286 -------------------~~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  339 (534)
T COG0318         286 -------------------DDDLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD  339 (534)
T ss_pred             -------------------ccccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCc
Confidence                               11111       13999999999999999999999998 4799999999999887777766


Q ss_pred             C-ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccC-CccccC
Q 010878          431 E-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTG  498 (498)
Q Consensus       431 ~-~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~d-Gw~~TG  498 (498)
                      . ....+++|+|+||++++|+| ++++ .+.+ |++|||+|+||+++.|||++|+.|.+.|.+ |||+||
T Consensus       340 ~~~~~~~~~G~~~pg~~v~Ivd-~~~~-~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TG  406 (534)
T COG0318         340 DLLAKPGSVGRPLPGVEVRIVD-PDGG-EVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTG  406 (534)
T ss_pred             hhhhcCCcccccCCCcEEEEEe-CCCC-ccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeec
Confidence            5 33558889999999999999 6665 2332 689999999999999999999999998865 999998

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=9.6e-54  Score=425.52  Aligned_cols=378  Identities=21%  Similarity=0.246  Sum_probs=305.9

Q ss_pred             HHHHHHHHHc-CCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHHH
Q 010878           45 WDIFSMSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACN  122 (498)
Q Consensus        45 ~~~l~~~~~~-~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~  122 (498)
                      .++++++.+. .+|+.|+++.   ++.++. +.+||+||.+.++++|+.|++ .|+ +||+|++++|+.++.++++|||+
T Consensus        12 ~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~   86 (528)
T COG0365          12 LNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATA   86 (528)
T ss_pred             hhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence            3467777664 5689999997   544344 899999999999999999987 578 99999999999999999999999


Q ss_pred             HcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccc--cCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS--AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       123 ~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      ++|++..|+.+.++++++...+++++++++|+++....+.+...-..  ......++++....              ..|
T Consensus        87 riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~--------------~~~  152 (528)
T COG0365          87 RIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG--------------LWY  152 (528)
T ss_pred             HcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--------------ccH
Confidence            99999999999999999999999999999999987665433211100  00000133333221              567


Q ss_pred             HHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhh-hhccccCCCCCCcEEEEecChHHHH
Q 010878          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMTVDDVYLSFLPLAHIL  279 (498)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~-~~~~~~~~~~~~d~~l~~~pl~h~~  279 (498)
                      +++...... .....+...+++++++|||||||.||+|+|+|..++........ .+     .+.++|++++..++.|+.
T Consensus       153 ~~~~~~~~~-~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~-----~~~~~Dv~w~~ad~GW~~  226 (528)
T COG0365         153 DEAVEKASE-KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG-----DLLPGDRFWNSSDPGWIY  226 (528)
T ss_pred             HHHhhccCC-CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh-----CCCCCCEEEeCCCchhhh
Confidence            777655422 23334478899999999999999999999999977776655543 33     677999999999999999


Q ss_pred             HHHH-HHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          280 DRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       280 g~~~-~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      |.+. ++.+|..|+++++.++    +++.+++.|+++++|+++..|+.+++|.+.-.                       
T Consensus       227 g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~-----------------------  283 (528)
T COG0365         227 GLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL-----------------------  283 (528)
T ss_pred             CchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-----------------------
Confidence            9998 8889999999999875    38999999999999999999999999876211                       


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccc
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~  434 (498)
                                    .++.|++        +||.+.++||||+++..+++.+.+|++|.+.||+||+|++.....+ .. +
T Consensus       284 --------------~~~~dls--------sLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~-~  339 (528)
T COG0365         284 --------------GEPYDLS--------SLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PV-K  339 (528)
T ss_pred             --------------cccccch--------hheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-Cc-C
Confidence                          3344454        9999999999999999999999999999999999999965555544 33 3


Q ss_pred             cCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecC--CCcccccCCchhhhhhccCCccccC
Q 010878          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       435 ~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      +++.|+|+||+++.|+| ++++.++.+  + |+|.|+.+  +++.+||+|++.+.+.|.++||.||
T Consensus       340 ~g~~g~p~pG~~~~vvd-d~g~~~~~~--~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tG  401 (528)
T COG0365         340 NGSSGLPLPGYAVRRVD-DEGNPVPPG--V-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTG  401 (528)
T ss_pred             CCCCCCCCCCceeEEEC-CCCCcCCCC--c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecC
Confidence            36669999999999999 776655544  6 99999986  9999999999999988855599887

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=3.2e-52  Score=439.40  Aligned_cols=386  Identities=22%  Similarity=0.282  Sum_probs=301.3

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...++.+.|+++++++|+++|+++.   + .++.++++||+||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus        37 ~~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l  112 (614)
T PRK08180         37 YPRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLAL  112 (614)
T ss_pred             cCccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHH
Confidence            4578999999999999999999864   2 23345789999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCC-----hhHHHHHHhhcCccEEEEcCch-hHHhhcccccccCCccEEEEecCCcHHHHHHHhhc
Q 010878          120 ACNALSLICVPLYDTLG-----PGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~  193 (498)
                      ||+++|++++|+++.++     .+++.+++++++++++|+++.. .........   .....++.......         
T Consensus       113 A~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~---------  180 (614)
T PRK08180        113 AAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVV---PADVEVVAVRGAVP---------  180 (614)
T ss_pred             HHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhc---cCCceEEEecCCCC---------
Confidence            99999999999999998     7899999999999999998642 111111111   11122333322110         


Q ss_pred             CcceeeHHHHHhcccccc--ccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCC--CCcEE
Q 010878          194 GIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT--VDDVY  269 (498)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~--~~d~~  269 (498)
                      .....+++++........  .......++++++|+|||||||.||||++||.++++++......+     ...  .++++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~  255 (614)
T PRK08180        181 GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVL  255 (614)
T ss_pred             CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEE
Confidence            001235666554321111  111234578999999999999999999999999998887765544     332  56899


Q ss_pred             EEecChHHHHHHHH-HHHHHHcCcEEEEeCC--C---hHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHH
Q 010878          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG--D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (498)
Q Consensus       270 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~--~---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (498)
                      ++++|++|.+|+.. ++.+++.|+++++.+.  +   ...+++.++++++|+++++|+++..|++......         
T Consensus       256 l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~---------  326 (614)
T PRK08180        256 VDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDA---------  326 (614)
T ss_pred             EEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhch---------
Confidence            99999999999865 6678999999998763  3   3577889999999999999999999877542210         


Q ss_pred             HHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHh----cC--CceEeeecc
Q 010878          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC--AFLVQGYGL  417 (498)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~g--~~l~~~YG~  417 (498)
                                              .....++        ++||.+++||+++++++.+++.+.    +|  +++++.||+
T Consensus       327 ------------------------~~~~~~~--------~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~  374 (614)
T PRK08180        327 ------------------------ALRRRFF--------SRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGM  374 (614)
T ss_pred             ------------------------hhhhhhc--------cceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecc
Confidence                                    0111112        489999999999999999999874    34  689999999


Q ss_pred             ccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccc
Q 010878          418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH  496 (498)
Q Consensus       418 tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~  496 (498)
                      ||++.+++...... ..++++|+|+||++++|+| +         +..|||+|+|++++.|||++|+.+.+.| .||||+
T Consensus       375 TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~  443 (614)
T PRK08180        375 TETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYR  443 (614)
T ss_pred             cccCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCcee
Confidence            99987766554333 3458999999999999998 3         2469999999999999999999999999 699999


Q ss_pred             cC
Q 010878          497 TG  498 (498)
Q Consensus       497 TG  498 (498)
                      ||
T Consensus       444 TG  445 (614)
T PRK08180        444 SG  445 (614)
T ss_pred             cc
Confidence            98

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.5e-52  Score=438.47  Aligned_cols=408  Identities=23%  Similarity=0.275  Sum_probs=309.4

Q ss_pred             CCCcCCceecCcCC----CCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHH
Q 010878           18 KPSVGPVYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL   93 (498)
Q Consensus        18 ~~~~~~~~r~~~~~----~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L   93 (498)
                      .|....++|+...+    ..++.. ....++.++|+++++.+||++|+++.   +...+.++.+||+||.++++++|++|
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L   97 (624)
T PRK12582         22 KPPDISVERRADGSIVIKSRHPLG-PYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQAL   97 (624)
T ss_pred             CCCceEEEEcCCceEEEecCCCCC-CcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHH
Confidence            34556667765333    333333 45778999999999999999999875   33245567999999999999999999


Q ss_pred             HHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCCh-----hHHHHHHhhcCccEEEEcCch-hHHhhcccc
Q 010878           94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP-----GAVNFILDHAEIDFVFVQDKK-VKELLSPDC  167 (498)
Q Consensus        94 ~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~  167 (498)
                      ++.|+++||+|+++++|+++++++++||+++|++++|+++.++.     +++.++++.++++++|+++.. .........
T Consensus        98 ~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~  177 (624)
T PRK12582         98 LDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALD  177 (624)
T ss_pred             HHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999885     899999999999999998642 122212111


Q ss_pred             cccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhcccccc--ccCCCCCCCCeEEEEeccCCCCCCceEEeccHhH
Q 010878          168 RSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI  245 (498)
Q Consensus       168 ~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l  245 (498)
                      .  ... .++.++....         ......++++........  .......++++++++|||||||.||||+++|.++
T Consensus       178 ~--~~~-~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l  245 (624)
T PRK12582        178 L--LDV-TVVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMM  245 (624)
T ss_pred             h--cCc-eEEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHH
Confidence            1  112 2334432211         001234555543321110  0112345789999999999999999999999999


Q ss_pred             HHHhhhhhhhhccccCCCC---CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC--C---hHhHHHHHhhhCCcEE
Q 010878          246 ATFVSGVDLFLDQFEDKMT---VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--D---LNALRDDLMELKPTLL  316 (498)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~---~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~--~---~~~~~~~i~~~~~t~l  316 (498)
                      ++........+     ...   ..+++++++|++|.+|+.. ++.++..|+++++.+.  +   ...+++.++++++|++
T Consensus       246 ~~~~~~~~~~~-----~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~  320 (624)
T PRK12582        246 CANIAMQEQLR-----PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVY  320 (624)
T ss_pred             HHHHHHHHHhc-----cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEE
Confidence            98876654433     222   3589999999999999876 5567999999998753  2   3456778899999999


Q ss_pred             EecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCC
Q 010878          317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS  396 (498)
Q Consensus       317 ~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~  396 (498)
                      +++|.+++.+++.....                                 +.....++        ++||.+++||++++
T Consensus       321 ~~vP~~~~~l~~~~~~~---------------------------------~~~~~~~~--------~slr~i~~gGa~l~  359 (624)
T PRK12582        321 GNVPAGYAMLAEAMEKD---------------------------------DALRRSFF--------KNLRLMAYGGATLS  359 (624)
T ss_pred             eccCHHHHHHHHHHhhC---------------------------------HHHHHHHh--------hheeEEEecCCCCC
Confidence            99999999887643211                                 11122223        38999999999999


Q ss_pred             HHHHHHHHHhc----C--CceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEE
Q 010878          397 TEVEEFLRVTC----C--AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV  470 (498)
Q Consensus       397 ~~~~~~~~~~~----g--~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v  470 (498)
                      +++.+++.+.+    |  +++++.||+||++.++....... ...+++|+|+||++++|++          .|+.|||+|
T Consensus       360 ~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~~----------~G~~GEl~v  428 (624)
T PRK12582        360 DDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDT-ERVGLIGLPLPGVELKLAP----------VGDKYEVRV  428 (624)
T ss_pred             HHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCC-CCCCCCCcCCCCcEEEEcc----------CCCceEEEE
Confidence            99999998863    3  68999999999987665333222 3458999999999999976          346899999


Q ss_pred             ecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          471 RGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       471 ~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      +|++++.|||++|+.+.+.| .||||+||
T Consensus       429 rg~~v~~GY~~~p~~t~~~f~~dgw~~TG  457 (624)
T PRK12582        429 KGPNVTPGYHKDPELTAAAFDEEGFYRLG  457 (624)
T ss_pred             ECCcccccccCCccchhhhcCccCCcccc
Confidence            99999999999999999999 79999998

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=4e-52  Score=431.98  Aligned_cols=383  Identities=21%  Similarity=0.207  Sum_probs=301.2

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..++.+.|.+.++++|+++|+.+.   +.     .++||+||.++++++|+.|.+   .+||+|+++++|+++++++++|
T Consensus        18 ~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA   86 (539)
T PRK06334         18 GKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFA   86 (539)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHH
Confidence            478999999999999999998754   32     379999999999999999987   3899999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++|+++.++.+++.++++.++++++|++.+....+.+...........++.+++....            ..+
T Consensus        87 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~  154 (539)
T PRK06334         87 TLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LSF  154 (539)
T ss_pred             HHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------ccH
Confidence            99999999999999999999999999999999999876655433221100011234444321100            011


Q ss_pred             HHHHhc-----ccc----ccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEE
Q 010878          201 DEFLHL-----GKV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (498)
Q Consensus       201 ~~~~~~-----~~~----~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (498)
                      .+....     ...    .........++++++++|||||||.||+|+++|.++..+.......+     ++..+|++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~  229 (539)
T PRK06334        155 WEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMMS  229 (539)
T ss_pred             HHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEEE
Confidence            111000     000    00111234678999999999999999999999999998877766555     7788999999


Q ss_pred             ecChHHHHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 010878          272 FLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (498)
Q Consensus       272 ~~pl~h~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (498)
                      .+|++|.+|+.. ++.++..|+++++...  ++..+++.|+++++|+++++|.+++.+++......              
T Consensus       230 ~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------  295 (539)
T PRK06334        230 FLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE--------------  295 (539)
T ss_pred             ecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc--------------
Confidence            999999999976 6778999999988753  89999999999999999999999999876322110              


Q ss_pred             HHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCccccccc
Q 010878          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVC  427 (498)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~  427 (498)
                                             .++        ++||.+++||+++++++.+++++.+ ++.+++.||+||++.+++..
T Consensus       296 -----------------------~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~  344 (539)
T PRK06334        296 -----------------------SCL--------PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITIN  344 (539)
T ss_pred             -----------------------ccc--------ccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEec
Confidence                                   011        3899999999999999999999988 68999999999998777765


Q ss_pred             CCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc--cCCccccC
Q 010878          428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDGWFHTG  498 (498)
Q Consensus       428 ~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f--~dGw~~TG  498 (498)
                      ........+++|+|++|++++|+| ++++ .+++.|+.|||+|+|++++.|||++++.+....  .+|||+||
T Consensus       345 ~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TG  415 (539)
T PRK06334        345 TVNSPKHESCVGMPIRGMDVLIVS-EETK-VPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTG  415 (539)
T ss_pred             cCCCCCCCCcCceecCCCEEEEEc-CCCC-ccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECC
Confidence            544333446899999999999998 5433 455667999999999999999999998654322  36899998

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-52  Score=441.18  Aligned_cols=408  Identities=17%  Similarity=0.211  Sum_probs=304.7

Q ss_pred             CcccHHHHHHHHHHc--CCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 010878           40 DLNTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~--~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~  117 (498)
                      ..++..++++++++.  +|+++|+++.   ...++..+++||+||.++++++|..|+++|+++||+|+++++|+++++++
T Consensus        57 ~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~  133 (647)
T PTZ00237         57 ELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIA  133 (647)
T ss_pred             eeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence            346677888888765  7999999875   33233347899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCch---------hHHhhcccccccCCccEEEEecCCc---HH
Q 010878          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK---------VKELLSPDCRSAQRLRVMVCFTSLT---AE  185 (498)
Q Consensus       118 ~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~vi~~~~~~---~~  185 (498)
                      +|||+++|++++|+++.++.+++.+++++++++++|+++..         ...+.+...........++.+....   ..
T Consensus       134 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~  213 (647)
T PTZ00237        134 MLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSES  213 (647)
T ss_pred             HHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccccc
Confidence            99999999999999999999999999999999999997631         1222221110101223455442111   00


Q ss_pred             H-HHH-HhhcCcceeeHHHHHhccc----cccccCCCCCCCCeEEEEeccCCCCCCceEEeccHh-HHHHhhhhhhhhcc
Q 010878          186 Q-KEM-AVQTGIKPYSWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQ  258 (498)
Q Consensus       186 ~-~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~-l~~~~~~~~~~~~~  258 (498)
                      . ... ..........|++++....    ..........++++++|+|||||||.||||+++|.+ +.+........+  
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~--  291 (647)
T PTZ00237        214 DLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII--  291 (647)
T ss_pred             ccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc--
Confidence            0 000 0000001245666654311    111122345678999999999999999999999998 444333223223  


Q ss_pred             ccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCCC-------hHhHHHHHhhhCCcEEEecchHHHHHHHHHH
Q 010878          259 FEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD-------LNALRDDLMELKPTLLAGVPRVFEKIHEGIK  331 (498)
Q Consensus       259 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~-------~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~  331 (498)
                         ....+|++++..|+.|+.+...++.+++.|+++++.+++       +..+++.|+++++|+++++|++++.+++...
T Consensus       292 ---~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  368 (647)
T PTZ00237        292 ---EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDP  368 (647)
T ss_pred             ---CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCc
Confidence               567789999999999987766688899999999987652       5789999999999999999999998875211


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCce
Q 010878          332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFL  411 (498)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l  411 (498)
                      ..                                .......++        ++||.+++||+++++++.+++++.+|+++
T Consensus       369 ~~--------------------------------~~~~~~~~l--------~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i  408 (647)
T PTZ00237        369 EA--------------------------------TIIRSKYDL--------SNLKEIWCGGEVIEESIPEYIENKLKIKS  408 (647)
T ss_pred             cc--------------------------------cccccccCc--------chheEEEecCccCCHHHHHHHHHhcCCCE
Confidence            00                                000011222        38999999999999999999999999999


Q ss_pred             EeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecC---CCcccccCCchhhhh
Q 010878          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRE  488 (498)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~  488 (498)
                      ++.||+||+++.++..........+++|+|+||++++|+| +++..++  .|+.|||++++|   +++.|||++++.+.+
T Consensus       409 ~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~--~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~  485 (647)
T PTZ00237        409 SRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKELN--VNEIGEVAFKLPMPPSFATTFYKNDEKFKQ  485 (647)
T ss_pred             EeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCC--CCCceEEEEeccCCchhhCceeCCHHHHHH
Confidence            9999999998765544332223348999999999999999 7776555  458999999986   899999999999988


Q ss_pred             hcc--CCccccC
Q 010878          489 SII--DGWFHTG  498 (498)
Q Consensus       489 ~f~--dGw~~TG  498 (498)
                      .|.  +|||+||
T Consensus       486 ~f~~~~g~~~TG  497 (647)
T PTZ00237        486 LFSKFPGYYNSG  497 (647)
T ss_pred             HHhCCCCEEECC
Confidence            883  7999998

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=7.6e-52  Score=432.85  Aligned_cols=390  Identities=19%  Similarity=0.172  Sum_probs=304.0

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...++.++|.+.++++|+++|+++.    +     +.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++
T Consensus         5 ~~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~l   75 (563)
T PLN02860          5 SQAHICQCLTRLATLRGNAVVTISG----N-----RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLL   75 (563)
T ss_pred             hhhHHHHHHHHHHHhcCCceEEecC----C-----ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4578899999999999999999753    3     489999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++|+++.++.+++.++++++++++++++...............+..+.++..++......    ........
T Consensus        76 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~  151 (563)
T PLN02860         76 AVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVF----IFLNSFLT  151 (563)
T ss_pred             HHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccc----cchhhccc
Confidence            99999999999999999999999999999999999876432221111112233333444432211000    00000111


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  279 (498)
                      .+++...............++++++++|||||||.||+|.++|.+++.+.......+     ++.++|+++..+|++|.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~  226 (563)
T PLN02860        152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIG  226 (563)
T ss_pred             cchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhc
Confidence            222211110111111233578999999999999999999999999988776655554     788899999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 010878          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (498)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (498)
                      |+..++.++..|+++++.+. ++..+++.++++++|+++++|.++..+++......                        
T Consensus       227 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------------------  282 (563)
T PLN02860        227 GLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM------------------------  282 (563)
T ss_pred             cHHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh------------------------
Confidence            99888889999999988876 99999999999999999999999999876421110                        


Q ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC------
Q 010878          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE------  431 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~------  431 (498)
                                 ...+        .++||.+++||+++++++.+++++.| ++++++.||+||+++.++......      
T Consensus       283 -----------~~~~--------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  343 (563)
T PLN02860        283 -----------TWKV--------FPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESP  343 (563)
T ss_pred             -----------cccc--------ccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccc
Confidence                       0001        14899999999999999999999988 789999999999987554332111      


Q ss_pred             ----------------ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCc
Q 010878          432 ----------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW  494 (498)
Q Consensus       432 ----------------~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw  494 (498)
                                      .....++|+|+|+++++|++ ++       .++.|||+|+|++++.|||++++.+.+.| .|||
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~  415 (563)
T PLN02860        344 KQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGW  415 (563)
T ss_pred             hhhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCe
Confidence                            11123689999999999998 44       34789999999999999999999999888 7999


Q ss_pred             cccC
Q 010878          495 FHTG  498 (498)
Q Consensus       495 ~~TG  498 (498)
                      |+||
T Consensus       416 ~~TG  419 (563)
T PLN02860        416 LDTG  419 (563)
T ss_pred             EEcc
Confidence            9998

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=2e-51  Score=435.84  Aligned_cols=402  Identities=17%  Similarity=0.190  Sum_probs=305.3

Q ss_pred             ccHHHHHHHHHH-cCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           42 NTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        42 ~tl~~~l~~~~~-~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      +...++|+++++ .+|+++|+++.   ....+..+++||+||.+++.++|+.|+++|+++||+|+++++|++++++++||
T Consensus        88 N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA  164 (666)
T PLN02654         88 NICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLA  164 (666)
T ss_pred             eHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            344678887776 48999999875   33334447899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHH---------hhcccccc---cCCccEEEEecCCcHHHHH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE---------LLSPDCRS---AQRLRVMVCFTSLTAEQKE  188 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~---~~~~~~vi~~~~~~~~~~~  188 (498)
                      |+++|++++|+++.++.+++..++++++++++|+++.....         +.+.....   ......++.+.........
T Consensus       165 ~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (666)
T PLN02654        165 CARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKRE  244 (666)
T ss_pred             HHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccc
Confidence            99999999999999999999999999999999998764321         11111100   0111223332221100000


Q ss_pred             HHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHh-hhhhhhhccccCCCCCCc
Q 010878          189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFEDKMTVDD  267 (498)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~-~~~~~~~~~~~~~~~~~d  267 (498)
                      ...........|+++..... .........++++++|+|||||||.||||+++|.+++... ......+     +++++|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-----~~~~~d  318 (666)
T PLN02654        245 DTKWQEGRDVWWQDVVPNYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-----DYKPTD  318 (666)
T ss_pred             ccccccCCcccHHHHhhcCC-CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-----CCCCCc
Confidence            00000001223555543321 1112223467999999999999999999999999986443 3344444     788999


Q ss_pred             EEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHH
Q 010878          268 VYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (498)
Q Consensus       268 ~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~  341 (498)
                      ++++..|+.|+.|... ++.+|+.|+++++.++     ++..+++.|+++++|+++++|++++.|.+....         
T Consensus       319 ~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------  389 (666)
T PLN02654        319 VYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDE---------  389 (666)
T ss_pred             EEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcc---------
Confidence            9999999999999876 6778999999999863     789999999999999999999999998753110         


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeeccc
Q 010878          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLT  418 (498)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~l~~~YG~t  418 (498)
                                                .....++        ++||.++++|+++++++.+++.+.+|   +++.+.||+|
T Consensus       390 --------------------------~~~~~~l--------~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~T  435 (666)
T PLN02654        390 --------------------------YVTRHSR--------KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQT  435 (666)
T ss_pred             --------------------------ccccCCh--------hheeEEEEecCCCCHHHHHHHHHHhCCCCCceecccccc
Confidence                                      0111223        38999999999999999999999987   6899999999


Q ss_pred             cCcccccccCCCC-ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec--CCCcccccCCchhhhhhc---cC
Q 010878          419 ETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---ID  492 (498)
Q Consensus       419 E~~~~~~~~~~~~-~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~f---~d  492 (498)
                      |+++......+.. ...++++|+|+||++++|+| ++++.++  .++.|||+|++  |+++.|||++++.+.+.|   .+
T Consensus       436 E~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~--~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~  512 (666)
T PLN02654        436 ETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIE--GECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFA  512 (666)
T ss_pred             ccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCC--CCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCC
Confidence            9987666544332 34558999999999999999 7777554  44789999999  799999999999887765   38


Q ss_pred             CccccC
Q 010878          493 GWFHTG  498 (498)
Q Consensus       493 Gw~~TG  498 (498)
                      |||+||
T Consensus       513 g~~~TG  518 (666)
T PLN02654        513 GYYFSG  518 (666)
T ss_pred             CEEEeC
Confidence            999998

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=6e-51  Score=430.65  Aligned_cols=405  Identities=22%  Similarity=0.276  Sum_probs=312.4

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ....++.++|.+.++.+|+++|+++... ++..+..+++||+||.+++.++|+.|+++|+++||+|+++++|++++++++
T Consensus        22 ~~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~  100 (632)
T PRK07529         22 DLPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFAL  100 (632)
T ss_pred             cCCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            4457899999999999999999987411 111223478999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh-----HHhhcccccccCCccEEEEecCCcHH--HHHHHh
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAE--QKEMAV  191 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~vi~~~~~~~~--~~~~~~  191 (498)
                      |||+++| +++|+++.++++++.++++.++++++|++....     +.+.... ...+.++.++.++.....  .+....
T Consensus       101 lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~  178 (632)
T PRK07529        101 WGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVL-AALPELRTVVEVDLARYLPGPKRLAV  178 (632)
T ss_pred             HHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHH-hcCCcceeEEEecCcccccccccccc
Confidence            9999999 578999999999999999999999999986432     2222211 123455666666533100  000000


Q ss_pred             -----hcCcceeeHHHHHhcccccc-ccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCC
Q 010878          192 -----QTGIKPYSWDEFLHLGKVNE-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV  265 (498)
Q Consensus       192 -----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~  265 (498)
                           ........+++.+....... .......++++++++|||||||.||+|.++|.+++++.......+     .+.+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~  253 (632)
T PRK07529        179 PLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGP  253 (632)
T ss_pred             cccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCC
Confidence                 01112335555554332211 112234678999999999999999999999999998877766555     6789


Q ss_pred             CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC----C---hHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhh
Q 010878          266 DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (498)
Q Consensus       266 ~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~----~---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~  337 (498)
                      +|++++.+|++|.+++.. ++.++..|+++++.+.    +   ...+++.++++++|++.++|+++..+++...      
T Consensus       254 ~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~------  327 (632)
T PRK07529        254 GDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV------  327 (632)
T ss_pred             CCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc------
Confidence            999999999999999876 7788999999998753    2   3578899999999999999999998865210      


Q ss_pred             chHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeecc
Q 010878          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL  417 (498)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~  417 (498)
                                                      +..++        ++||.+++||+++++++.+++++.+|+++++.||+
T Consensus       328 --------------------------------~~~~~--------~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~  367 (632)
T PRK07529        328 --------------------------------DGHDI--------SSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGL  367 (632)
T ss_pred             --------------------------------cCCCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecc
Confidence                                            00112        38999999999999999999999999999999999


Q ss_pred             ccCcccccccCCCCccccCccccCcCCceEEeeec-CCCC-CCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCc
Q 010878          418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV-PEMG-YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW  494 (498)
Q Consensus       418 tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~-~~~~-~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw  494 (498)
                      ||++.++...........+++|+|+|+++++|+.. +++. ..+++.|+.|||+|+|++++.||+++++ +...| .+||
T Consensus       368 TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw  446 (632)
T PRK07529        368 TEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGW  446 (632)
T ss_pred             cccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCc
Confidence            99988777665544445689999999999999752 3331 1455667999999999999999998654 55556 8899


Q ss_pred             cccC
Q 010878          495 FHTG  498 (498)
Q Consensus       495 ~~TG  498 (498)
                      |+||
T Consensus       447 ~~TG  450 (632)
T PRK07529        447 LNTG  450 (632)
T ss_pred             eEcC
Confidence            9998

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-51  Score=428.33  Aligned_cols=383  Identities=20%  Similarity=0.197  Sum_probs=310.6

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~  121 (498)
                      .++.++|++.++.+||++|+++.   +      .++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~  119 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA  119 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            48999999999999999999864   2      48999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHH
Q 010878          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (498)
Q Consensus       122 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  201 (498)
                      +++|++++|+++.++.+++.++++.++++++|++.+....+.+.. ........++...+...       ........++
T Consensus       120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  191 (549)
T PRK07788        120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALP-PDLGRLRAWGGNPDDDE-------PSGSTDETLD  191 (549)
T ss_pred             HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhc-cccccceEEEEecCccc-------cCCcCcccHH
Confidence            999999999999999999999999999999999987766554321 11222333322221110       0012345677


Q ss_pred             HHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHH
Q 010878          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (498)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~  281 (498)
                      ++......   ...+...++.++++|||||||.||+|.++|.++++.+......+     ++..+|++++.+|++|.+|+
T Consensus       192 ~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~  263 (549)
T PRK07788        192 DLIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGW  263 (549)
T ss_pred             HHhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHH
Confidence            77654321   12223456789999999999999999999999999877766655     78889999999999999999


Q ss_pred             HHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccc
Q 010878          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (498)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (498)
                      ..++.++..|+++++... ++..+++.++++++|+++++|.+++.+++......                          
T Consensus       264 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------  317 (549)
T PRK07788        264 AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVL--------------------------  317 (549)
T ss_pred             HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccccc--------------------------
Confidence            888889999999988765 99999999999999999999999998875321100                          


Q ss_pred             CCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCcccc
Q 010878          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (498)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~  440 (498)
                               ...++        ++||.+++||+++++++.+++.+.++.++++.||+||++..+.....+....++++|+
T Consensus       318 ---------~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~  380 (549)
T PRK07788        318 ---------AKYDT--------SSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGR  380 (549)
T ss_pred             ---------CCCCC--------CceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCccc
Confidence                     00011        3899999999999999999999999999999999999986655443332334578999


Q ss_pred             CcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       441 ~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      |++|++++|+| +++..++.  |+.|||+|+|+.++.||+++++.   .+.+|||+||
T Consensus       381 ~~~~~~~~i~d-~~~~~~~~--g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TG  432 (549)
T PRK07788        381 PPKGVTVKILD-ENGNEVPR--GVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSG  432 (549)
T ss_pred             CCCCcEEEEEC-CCcCCCCC--CCeEEEEEeCCCccccccCCCcc---cccCCceecC
Confidence            99999999999 77775554  58999999999999999998775   2468999998

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=1.1e-50  Score=423.09  Aligned_cols=386  Identities=24%  Similarity=0.266  Sum_probs=312.7

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~  121 (498)
                      .++.+.|++.++.+|+++|+++.   +...+.++.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~  100 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC  100 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence            57999999999999999999876   433445579999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh-----HHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010878          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (498)
Q Consensus       122 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (498)
                      +++|++++|+++.++.+++.++++.++++++++++...     ..+.+ .....+..+.++.++...             
T Consensus       101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------  166 (547)
T PRK13295        101 SRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARR-LRPELPALRHVVVVGGDG-------------  166 (547)
T ss_pred             HhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHH-HhhhCCCcceEEEecCCC-------------
Confidence            99999999999999999999999999999999987541     11111 111224455566554321             


Q ss_pred             eeeHHHHHhccc-----c--ccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEE
Q 010878          197 PYSWDEFLHLGK-----V--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (498)
Q Consensus       197 ~~~~~~~~~~~~-----~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (498)
                      ..++.++.....     .  .........++++++++|||||||.||+|+++|.+++..+......+     ++.++|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~  241 (547)
T PRK13295        167 ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDVI  241 (547)
T ss_pred             ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCeE
Confidence            112333332110     0  01111234568999999999999999999999999998888766665     78899999


Q ss_pred             EEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHH
Q 010878          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (498)
Q Consensus       270 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (498)
                      ++.+|++|..++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+.......              
T Consensus       242 l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~--------------  307 (547)
T PRK13295        242 LMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES--------------  307 (547)
T ss_pred             EEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc--------------
Confidence            99999999999876 7788999999998876 8999999999999999999999998886532110              


Q ss_pred             HHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCccccccc
Q 010878          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC  427 (498)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~  427 (498)
                                             ..++        ++||.+++||+++++++.+++++.+++++++.||+||++.+++..
T Consensus       308 -----------------------~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  356 (547)
T PRK13295        308 -----------------------GRPV--------SSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTK  356 (547)
T ss_pred             -----------------------CCCc--------ccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeecc
Confidence                                   0011        489999999999999999999998999999999999998766554


Q ss_pred             CCCC-ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          428 FPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       428 ~~~~-~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      .... .....++|+|+++++++|+| +++..++  .|+.|||+|+|++++.||+++++.+... .||||+||
T Consensus       357 ~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TG  424 (547)
T PRK13295        357 LDDPDERASTTDGCPLPGVEVRVVD-ADGAPLP--AGQIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTG  424 (547)
T ss_pred             CCCcchhccCccccccCCcEEEEEC-CCCCCCC--CCCCCeEEEEcCcccccccCCccccccC-CCCCeecc
Confidence            4322 22336899999999999999 7766544  4589999999999999999999988765 68999998

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-50  Score=424.89  Aligned_cols=390  Identities=19%  Similarity=0.233  Sum_probs=316.9

Q ss_pred             cccHHHHHHHHHH-cCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           41 LNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        41 ~~tl~~~l~~~~~-~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      .+.+.++++++++ .+|+++|+++.   +..  ..+.+||.||.++++++|..|.++|+++||+|+++++|+++++++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  116 (570)
T PRK04319         42 VNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALL  116 (570)
T ss_pred             eeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            4556678888877 57999999875   432  23689999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++|+++.++++++.++++.++++++|++.........   ...+..+.++.+++...        ......+
T Consensus       117 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~  185 (570)
T PRK04319        117 GALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA---DDLPSLKHVLLVGEDVE--------EGPGTLD  185 (570)
T ss_pred             HHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch---hcCCCceEEEEECCCcC--------CCcCccC
Confidence            999999999999999999999999999999999999876544321   12344556666553321        0112345


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  279 (498)
                      ++++...... ........++++++++|||||||.||+|+++|.++++.+......+     ++.++|++++..|++|..
T Consensus       186 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~  259 (570)
T PRK04319        186 FNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWVT  259 (570)
T ss_pred             HHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHhh
Confidence            6665543322 2222344678999999999999999999999999998887766655     788899999999999999


Q ss_pred             HHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010878          280 DRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (498)
Q Consensus       280 g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (498)
                      |+.. ++.++..|+++++...  ++..+++.|+++++|+++++|.+++.+++.....                       
T Consensus       260 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------  316 (570)
T PRK04319        260 GTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDL-----------------------  316 (570)
T ss_pred             CchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcc-----------------------
Confidence            8765 7788999999998754  8999999999999999999999999986521100                       


Q ss_pred             hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccC
Q 010878          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~  436 (498)
                                  ....++        ++||.+++||+++++++.+++++.+|.++++.||+||+++.++.........++
T Consensus       317 ------------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~  376 (570)
T PRK04319        317 ------------VKKYDL--------SSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPG  376 (570)
T ss_pred             ------------cccCCc--------ccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCC
Confidence                        001112        389999999999999999999999999999999999998776554443334458


Q ss_pred             ccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec--CCCcccccCCchhhhhhccCCccccC
Q 010878          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       437 s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ++|+|+||++++|+| +++..++  .|+.|||+++|  ++++.||+++++.+.+.|.+|||+||
T Consensus       377 ~~G~p~~g~~~~i~d-~~~~~~~--~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TG  437 (570)
T PRK04319        377 SMGKPLPGIEAAIVD-DQGNELP--PNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSG  437 (570)
T ss_pred             cCcCCCCCCEEEEEC-CCCCCCC--CCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeC
Confidence            999999999999999 7776554  55899999997  89999999999999999999999998

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=2e-51  Score=414.63  Aligned_cols=379  Identities=30%  Similarity=0.436  Sum_probs=292.8

Q ss_pred             HHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCe
Q 010878           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI  127 (498)
Q Consensus        48 l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~  127 (498)
                      |+++|+++||++|+++.   ++     +.+||+||.++++++|..|.++|+++|++|+++++|+++++++++||+++|++
T Consensus         1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~   72 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI   72 (417)
T ss_dssp             HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred             ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence            57899999999999971   23     69999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCChhHHHHHHhhcCccEEEE----cCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHH
Q 010878          128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF  203 (498)
Q Consensus       128 ~~~l~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (498)
                      ++|++|.++.+++.++++.++++++|+    +......+.+.... ......++.++......             .+.+
T Consensus        73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~  138 (417)
T PF00501_consen   73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQ-EDPSSSIIILDRDDLPK-------------KEAL  138 (417)
T ss_dssp             EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTT-STTTEEEEEESHSSCTT-------------CHHH
T ss_pred             ccccccccccccccccccccceeEEEEeccccccccccchhhhcc-ccccccccccccccccc-------------cccc
Confidence            999999999999999999999999997    33322222222221 12334555555332100             0001


Q ss_pred             HhccccccccCCC-CCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHH-
Q 010878          204 LHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-  281 (498)
Q Consensus       204 ~~~~~~~~~~~~~-~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~-  281 (498)
                      .......... .+ ..++++++++|||||||.||+|.++|+++++.+..+...  .. .+++  |++++.+|++|.+|+ 
T Consensus       139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~--~~-~~~~--d~~l~~~p~~~~~g~~  212 (417)
T PF00501_consen  139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALP--EY-FGLG--DRILSFLPLSHIFGLI  212 (417)
T ss_dssp             HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHH--HT-TTTT--TEEEESS-TTSHHHHH
T ss_pred             cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccccc--cc-cccC--ceEEeecccccccccc
Confidence            1000000000 00 056899999999999999999999999999998886511  00 1233  699999999999999 


Q ss_pred             HHHHHHHHcCcEEEEeCC-C---hHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 010878          282 VIEEYFFRRGASVGYYHG-D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (498)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~-~---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (498)
                      ..++.+++.|+++++++. .   ++.+++.++++++|+++++|.+++.+++..+.. ..                     
T Consensus       213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~---------------------  270 (417)
T PF00501_consen  213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TK---------------------  270 (417)
T ss_dssp             HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HH---------------------
T ss_pred             ccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-cc---------------------
Confidence            568899999999999986 2   477899999999999999999999997621111 00                     


Q ss_pred             cccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEeeeccccCcccccccC-CCCcccc
Q 010878          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCF-PDEMCMV  435 (498)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~l~~~YG~tE~~~~~~~~~-~~~~~~~  435 (498)
                                 ....++        ++||.++++|+++++++.+++++.++. ++++.||+||++.+++... .......
T Consensus       271 -----------~~~~~l--------~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~  331 (417)
T PF00501_consen  271 -----------ISKKDL--------SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKP  331 (417)
T ss_dssp             -----------GTTTTG--------TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSST
T ss_pred             -----------cccccc--------ccccccccccccCChhhccccccccccccceecccccccceeeeccccccccccc
Confidence                       000012        379999999999999999999999987 9999999999999887664 3333455


Q ss_pred             CccccCcCCceEEeeecCC-CCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhcc-CCccccC
Q 010878          436 GTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG  498 (498)
Q Consensus       436 ~s~G~~~~g~~i~ivd~~~-~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~-dGw~~TG  498 (498)
                      +++|+|+||++++|+| ++ ++.+  +.|+.|||+|+|++++.||+++++.+.+.|. +|||+||
T Consensus       332 ~~~G~~~~~~~~~ivd-~~~~~~~--~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TG  393 (417)
T PF00501_consen  332 GSVGKPLPGVEVKIVD-PNTGEPL--PPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTG  393 (417)
T ss_dssp             TSEBEESTTEEEEEEC-TTTSSBE--STTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEE
T ss_pred             cccccccccccccccc-ccccccc--cccccccccccCCccceeeeccccccccccccccceecc
Confidence            8899999999999999 55 5444  4568999999999999999999999999995 5899998

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.4e-50  Score=428.64  Aligned_cols=399  Identities=18%  Similarity=0.228  Sum_probs=311.1

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      .+...++|+++++.+|+++|+++.   +...+..+.+||+||.+++.++|+.|++.|+++||+|+++++|+++++++++|
T Consensus        56 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  132 (625)
T TIGR02188        56 LNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLA  132 (625)
T ss_pred             EEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            346678888888899999999986   33234457899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh---------HHhhcccccccC-CccEEEEecCCcHHHHHHH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMA  190 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~  190 (498)
                      |+++|++++|+++.++.+++.+++++++++++|+++...         ..+.+... ..+ .++.++.+........   
T Consensus       133 ~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---  208 (625)
T TIGR02188       133 CARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALE-KCPVSVEHVLVVRRTGNPVP---  208 (625)
T ss_pred             HHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHH-hCCCCccEEEEEcCCCCCcC---
Confidence            999999999999999999999999999999999987532         11211111 112 4555665543221000   


Q ss_pred             hhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhh-hhhhccccCCCCCCcEE
Q 010878          191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMTVDDVY  269 (498)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~-~~~~~~~~~~~~~~d~~  269 (498)
                      .. ......++++..... .........++++++|+|||||||.||+|+++|.+++...... ...+     ++.++|++
T Consensus       209 ~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~  281 (625)
T TIGR02188       209 WV-EGRDVWWHDLMAKAS-AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGDIF  281 (625)
T ss_pred             cc-ccccccHHHHHhhcC-CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCcEE
Confidence            00 011234666654321 1222334567899999999999999999999999987654332 2233     67889999


Q ss_pred             EEecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHH
Q 010878          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (498)
Q Consensus       270 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (498)
                      ++..|++|..+... ++.+|..|+++++.+.     ++..+++.|+++++|+++++|++++.+.+.....          
T Consensus       282 ~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------  351 (625)
T TIGR02188       282 WCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW----------  351 (625)
T ss_pred             EECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc----------
Confidence            99999999988765 7788999999998753     7899999999999999999999999886531110          


Q ss_pred             HHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeeccccC
Q 010878          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET  420 (498)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~l~~~YG~tE~  420 (498)
                                               .++.++        ++||.++++|+++++++.+++.+.++   +++++.||+||+
T Consensus       352 -------------------------~~~~~l--------~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~  398 (625)
T TIGR02188       352 -------------------------VKKHDL--------SSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTET  398 (625)
T ss_pred             -------------------------cccCCc--------cceeEEEEecCCCCHHHHHHHHHHcCCCCCceEeccccccc
Confidence                                     111122        38999999999999999999999885   789999999999


Q ss_pred             cccccccCCC-CccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec--CCCcccccCCchhhhhhc---cCCc
Q 010878          421 CGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGW  494 (498)
Q Consensus       421 ~~~~~~~~~~-~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~f---~dGw  494 (498)
                      ++.+...... ....++++|+|++|++++|+| ++++.++ +.|+.|||+|+|  |+++.|||++++.+.+.+   .+||
T Consensus       399 ~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~  476 (625)
T TIGR02188       399 GGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGY  476 (625)
T ss_pred             CCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCE
Confidence            8876554333 233458999999999999999 7777655 245899999999  689999999999887766   4899


Q ss_pred             cccC
Q 010878          495 FHTG  498 (498)
Q Consensus       495 ~~TG  498 (498)
                      |+||
T Consensus       477 ~~TG  480 (625)
T TIGR02188       477 YFTG  480 (625)
T ss_pred             EECC
Confidence            9998

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=5.6e-50  Score=423.51  Aligned_cols=400  Identities=17%  Similarity=0.140  Sum_probs=305.2

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      .+...++|+++++.+|+++|+++.   +..++..+.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++|
T Consensus        51 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA  127 (628)
T TIGR02316        51 TNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLA  127 (628)
T ss_pred             eeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            455568888888889999999975   33334447899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh---------HHhhcccccccCCccEEEEecCCcHHHHHHHh
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~  191 (498)
                      |+++|++++|+++.++.+++..++++++++++|+++...         ..+.+...........++.++.......    
T Consensus       128 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~----  203 (628)
T TIGR02316       128 CARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMR----  203 (628)
T ss_pred             HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcC----
Confidence            999999999999999999999999999999999986432         1111111111123455666653211000    


Q ss_pred             hcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHh-hhhhhhhccccCCCCCCcEEE
Q 010878          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFEDKMTVDDVYL  270 (498)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~-~~~~~~~~~~~~~~~~~d~~l  270 (498)
                      ........++++.........+.....++++++|+|||||||.||||+++|.+++... ......+     ++.++|+++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~  278 (628)
T TIGR02316       204 LIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQVMF  278 (628)
T ss_pred             cccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence            0000123566655432111122222467899999999999999999999999976443 3333334     788899999


Q ss_pred             EecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHH
Q 010878          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (498)
Q Consensus       271 ~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (498)
                      +..|+.|..|+.. ++.+|+.|+++++.++     ++..+++.|+++++|+++++|++++.+.+....            
T Consensus       279 ~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------  346 (628)
T TIGR02316       279 SASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA------------  346 (628)
T ss_pred             EcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc------------
Confidence            9999999998765 7788999999998763     688999999999999999999999887642100            


Q ss_pred             HHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccc
Q 010878          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT  424 (498)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~  424 (498)
                                             .....++        ++||.+++||+++++++.+++++.+|..+++.||+||++..+
T Consensus       347 -----------------------~~~~~~l--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~  395 (628)
T TIGR02316       347 -----------------------WLRKHDL--------SSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPV  395 (628)
T ss_pred             -----------------------ccccCCc--------cceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCcee
Confidence                                   0111122        489999999999999999999998999999999999998644


Q ss_pred             cccCCC---CccccCccccCcCCceEEeeecC-CCCCCCCCCCCCCeEEEecC---CCcccccCCchhhhhhc----cCC
Q 010878          425 TVCFPD---EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----IDG  493 (498)
Q Consensus       425 ~~~~~~---~~~~~~s~G~~~~g~~i~ivd~~-~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~f----~dG  493 (498)
                      ......   .....+++|+|+||++++|+| + +++.+  +.|+.|||+|+||   +++.|||++++.+.+.+    .+|
T Consensus       396 ~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~~--~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~  472 (628)
T TIGR02316       396 LAIMPGLDLKPVKLGSPGLPMYGYHLRVLD-EATGRPC--GPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRP  472 (628)
T ss_pred             ecCCCCCCcCCCCCCCcccCcCCceEEEEE-CCCCCCC--CCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCC
Confidence            333222   123348899999999999999 5 45544  4558999999998   57899999998776654    578


Q ss_pred             ccccC
Q 010878          494 WFHTG  498 (498)
Q Consensus       494 w~~TG  498 (498)
                      ||+||
T Consensus       473 ~~~TG  477 (628)
T TIGR02316       473 LYSSF  477 (628)
T ss_pred             EEECC
Confidence            99998

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.6e-50  Score=422.88  Aligned_cols=396  Identities=18%  Similarity=0.239  Sum_probs=307.5

Q ss_pred             cHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 010878           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (498)
Q Consensus        43 tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~  122 (498)
                      ...++|+++++.+|+++|+++.   +..++..+++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||+
T Consensus        68 ~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~  144 (637)
T PRK00174         68 VSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACA  144 (637)
T ss_pred             HHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            3467888888999999999975   3322345789999999999999999999999999999999999999999999999


Q ss_pred             HcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh---------HHhhcccccccCCccEEEEecCCcHHHHHHHhhc
Q 010878          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (498)
Q Consensus       123 ~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~  193 (498)
                      ++|++++|+++.++.+++.+++++++++++|+++...         ..+.+.. ...+..+.++.++......   .. .
T Consensus       145 ~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~-~  219 (637)
T PRK00174        145 RIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEAL-ANCPSVEKVIVVRRTGGDV---DW-V  219 (637)
T ss_pred             HcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHH-HhCCCccEEEEEcCCCCCc---Cc-C
Confidence            9999999999999999999999999999999987542         1111111 1123455566554321100   00 0


Q ss_pred             CcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhh-hhhhccccCCCCCCcEEEEe
Q 010878          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMTVDDVYLSF  272 (498)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~-~~~~~~~~~~~~~~d~~l~~  272 (498)
                      ......++++.... ..........++++++++|||||||.||+|+++|.+++...... ...+     ++.++|++++.
T Consensus       220 ~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~~~  293 (637)
T PRK00174        220 EGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYWCT  293 (637)
T ss_pred             CCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEEEc
Confidence            01123456655432 11222334567899999999999999999999999987654332 2223     67889999999


Q ss_pred             cChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHH
Q 010878          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (498)
Q Consensus       273 ~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (498)
                      +|++|..+... ++.+|+.|+++++.+.     ++..+++.|+++++|++.++|++++.+++.....             
T Consensus       294 ~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------  360 (637)
T PRK00174        294 ADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEH-------------  360 (637)
T ss_pred             CCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcc-------------
Confidence            99999998865 7788999999998753     6899999999999999999999999886531100             


Q ss_pred             HHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeeccccCccc
Q 010878          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGP  423 (498)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~l~~~YG~tE~~~~  423 (498)
                                            ....++        ++||.+++||+++++++.+++.+.++   +++++.||+||+++.
T Consensus       361 ----------------------~~~~~~--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~  410 (637)
T PRK00174        361 ----------------------PKKYDL--------SSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGI  410 (637)
T ss_pred             ----------------------cccCCc--------cceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCc
Confidence                                  011112        38999999999999999999998885   789999999999886


Q ss_pred             ccccCCCC-ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec--CCCcccccCCchhhhhhc---cCCcccc
Q 010878          424 TTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFHT  497 (498)
Q Consensus       424 ~~~~~~~~-~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~f---~dGw~~T  497 (498)
                      +....... ...++++|+|++|++++|+| +++..++  .|+.|||+|+|  |+++.|||++++.+.+.+   .+|||+|
T Consensus       411 ~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~--~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~T  487 (637)
T PRK00174        411 MITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLE--GGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFT  487 (637)
T ss_pred             eEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCC--CCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEEC
Confidence            65443322 23447899999999999999 7777655  45899999999  699999999999887765   4899999


Q ss_pred             C
Q 010878          498 G  498 (498)
Q Consensus       498 G  498 (498)
                      |
T Consensus       488 G  488 (637)
T PRK00174        488 G  488 (637)
T ss_pred             C
Confidence            8

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1.7e-49  Score=414.94  Aligned_cols=407  Identities=22%  Similarity=0.272  Sum_probs=305.6

Q ss_pred             CCceecCcCCCCCCCCCCCcccHH-HHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCC
Q 010878           22 GPVYRNLLASNGFPSVDSDLNTAW-DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAE   99 (498)
Q Consensus        22 ~~~~r~~~~~~~~~~~~~~~~tl~-~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~   99 (498)
                      .++|++....-.+|..  ...++. .++.+  +.+|+++|+++.   ++.    .++||.||.++++++|+.|++ .|++
T Consensus        22 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~--~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~   90 (560)
T PLN02574         22 TGIYSSKHPPVPLPSD--PNLDAVSFIFSH--HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVR   90 (560)
T ss_pred             CeeecCCCCCCCCCCC--CCCCHHHHHhcC--cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCC
Confidence            4566665433222222  122333 44444  678999999864   321    379999999999999999998 9999


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEe
Q 010878          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF  179 (498)
Q Consensus       100 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~  179 (498)
                      +||+|+++++|+++++++++||+++|++++|++|..+.+++.++++.+++++++++.+....+...      ... ++.+
T Consensus        91 ~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~  163 (560)
T PLN02574         91 QGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GVP-VIGV  163 (560)
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CCc-EEec
Confidence            999999999999999999999999999999999999999999999999999999998766554321      111 2222


Q ss_pred             cCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccc
Q 010878          180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF  259 (498)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~  259 (498)
                      .......     ........++++..... .........++++++++|||||||.||+|+++|++++..+..+.......
T Consensus       164 ~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~  237 (560)
T PLN02574        164 PENYDFD-----SKRIEFPKFYELIKEDF-DFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQ  237 (560)
T ss_pred             Ccccccc-----cCccCcccHHHHhhcCC-cccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccc
Confidence            2110000     00011234555543321 11122334578999999999999999999999999998776553211000


Q ss_pred             cCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhh
Q 010878          260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (498)
Q Consensus       260 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~  337 (498)
                      ......+++++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|+++++|.++..+++.....    
T Consensus       238 ~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----  313 (560)
T PLN02574        238 YEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV----  313 (560)
T ss_pred             cccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc----
Confidence            112245789999999999999976 5567888999988876 9999999999999999999999999987632100    


Q ss_pred             chHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeec
Q 010878          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYG  416 (498)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG  416 (498)
                                                      ...++        ++||.+++||+++++++.+++.+.+ ++.+++.||
T Consensus       314 --------------------------------~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG  353 (560)
T PLN02574        314 --------------------------------CGEVL--------KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYG  353 (560)
T ss_pred             --------------------------------ccCcc--------ccceEEEEecccCCHHHHHHHHHHCCCCcEEeccc
Confidence                                            00112        3899999999999999999999888 689999999


Q ss_pred             cccCcccccccCC-CCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCc
Q 010878          417 LTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW  494 (498)
Q Consensus       417 ~tE~~~~~~~~~~-~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw  494 (498)
                      +||++.+++.... ......+++|+|++|++++|+|.+++.  +++.|+.|||||+|++++.||+++++.+.+.| .|||
T Consensus       354 ~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~--~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~  431 (560)
T PLN02574        354 MTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGC--LLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGW  431 (560)
T ss_pred             ccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCc--CCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCC
Confidence            9999866543322 222345899999999999999933443  45566899999999999999999999999888 7999


Q ss_pred             cccC
Q 010878          495 FHTG  498 (498)
Q Consensus       495 ~~TG  498 (498)
                      |+||
T Consensus       432 ~~TG  435 (560)
T PLN02574        432 LRTG  435 (560)
T ss_pred             cccc
Confidence            9998

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-49  Score=410.83  Aligned_cols=390  Identities=25%  Similarity=0.377  Sum_probs=323.4

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ..+.++.+.|.+.++.+|+++|+++.    +     +++||+||++++.++|..|.+.|+++||+|+++++|++++++++
T Consensus         2 ~~~~~i~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~   72 (513)
T PRK07656          2 NEWMTLPELLARAARRFGDKEAYVFG----D-----QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA   72 (513)
T ss_pred             CccccHHHHHHHHHHHCCCCeEEEeC----C-----CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            35688999999999999999999874    3     48999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      +||+++|++++|+++..+.+++..++++++++++++++.......... ......+.++.........      ......
T Consensus        73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~  145 (513)
T PRK07656         73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDDP------HTEKMK  145 (513)
T ss_pred             HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCccccc------Cccccc
Confidence            999999999999999999999999999999999999987666544332 2234445555444332110      001234


Q ss_pred             eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                      +|+++...... .........+++++++|||||||.||+|.++|.++...+......+     ++.++|++++.+|++|.
T Consensus       146 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  219 (513)
T PRK07656        146 TFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHV  219 (513)
T ss_pred             cHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHH
Confidence            56776654322 1223445778999999999999999999999999998888777666     78899999999999999


Q ss_pred             HHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010878          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (498)
Q Consensus       279 ~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (498)
                      +++.. ++.+++.|+++++.+. ++..+++.++++++|+++++|.++..+++.....                       
T Consensus       220 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------  276 (513)
T PRK07656        220 FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRS-----------------------  276 (513)
T ss_pred             HHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcC-----------------------
Confidence            99876 6788999999988766 8999999999999999999999999987632110                       


Q ss_pred             hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEeeeccccCcccccccCCCCccc-
Q 010878          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCM-  434 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~l~~~YG~tE~~~~~~~~~~~~~~~-  434 (498)
                                    ..++        +++|.+++||+++++++.+++.+.++. .+++.||+||++++++.+....... 
T Consensus       277 --------------~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  334 (513)
T PRK07656        277 --------------AEDL--------SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKT  334 (513)
T ss_pred             --------------CCCc--------cceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccc
Confidence                          0112        389999999999999999999999998 9999999999988887766544322 


Q ss_pred             -cCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          435 -VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       435 -~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                       ++++|.|++|++++|+| +++..++  .|+.|||+++|+.++.||+++++.+...| .+|||+||
T Consensus       335 ~~~~vG~~~~~~~~~i~d-~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tG  397 (513)
T PRK07656        335 VAGTIGTAIAGVENKIVN-ELGEEVP--VGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTG  397 (513)
T ss_pred             cCCCccccCCCcEEEEEC-CCCCCCC--CCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceecc
Confidence             58999999999999999 7765544  55899999999999999999999998888 49999998

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2e-49  Score=407.85  Aligned_cols=363  Identities=25%  Similarity=0.327  Sum_probs=303.8

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ++++.+.|.+++.++||++|+++.   +      +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++|
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA   71 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            578999999999999999999864   3      5899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++|+++..+.+++..+++++++++++++......+....                              ...+
T Consensus        72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~  121 (483)
T PRK03640         72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF  121 (483)
T ss_pred             HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence            9999999999999999999999999999999999876544331110                              0113


Q ss_pred             HHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH
Q 010878          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (498)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g  280 (498)
                      +++...............++++++++|||||||.||+|.++|.++...+......+     ++.++|++++.+|++|.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  196 (483)
T PRK03640        122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG  196 (483)
T ss_pred             HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence            33332211111122234578999999999999999999999999988877665555     7889999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcc
Q 010878          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (498)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (498)
                      +..++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++.....                          
T Consensus       197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------  250 (483)
T PRK03640        197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG--------------------------  250 (483)
T ss_pred             HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence            9888889999999999887 9999999999999999999999999886532110                          


Q ss_pred             cCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCccccccc-CCCCccccCcc
Q 010878          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTA  438 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~-~~~~~~~~~s~  438 (498)
                                          ....+||.+++||+++++++.+.+++. ++++++.||+||++..+... .......++++
T Consensus       251 --------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v  309 (483)
T PRK03640        251 --------------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSA  309 (483)
T ss_pred             --------------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCc
Confidence                                001389999999999999999998874 99999999999987654433 33234455899


Q ss_pred             ccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       439 G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      |+|+++++++|.+ + +.  +++.|+.|||+|+|++++.||+++++.+...|.+|||+||
T Consensus       310 G~p~~~~~~~i~~-~-~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tG  365 (483)
T PRK03640        310 GKPLFPCELKIEK-D-GV--VVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTG  365 (483)
T ss_pred             ccccCCcEEEEec-C-CC--cCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeecc
Confidence            9999999999988 4 33  5556689999999999999999999999999999999998

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=4.1e-49  Score=410.40  Aligned_cols=405  Identities=25%  Similarity=0.349  Sum_probs=318.8

Q ss_pred             CcCCceecCcCCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCC
Q 010878           20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE   99 (498)
Q Consensus        20 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~   99 (498)
                      +.+-.||+......+    +...++.+++.++++.+|+++|+++.   +.  +  +++||.||.++++++|+.|.+.|++
T Consensus         5 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~a~~~~---~~--~--~~~ty~el~~~~~~la~~L~~~g~~   73 (537)
T PLN02246          5 SEEFIFRSKLPDIYI----PNHLPLHDYCFERLSEFSDRPCLIDG---AT--G--RVYTYADVELLSRRVAAGLHKLGIR   73 (537)
T ss_pred             cceeEecCCCCCCCC----CCCCcHHHHHHHHHHhCCCCeEEEec---CC--C--ceeeHHHHHHHHHHHHHHHHHhCCC
Confidence            344567776544322    33468999999999999999999864   21  1  5899999999999999999999999


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEe
Q 010878          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF  179 (498)
Q Consensus       100 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~  179 (498)
                      +||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|++......+.+....  .. ..++.+
T Consensus        74 ~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~-~~~i~~  150 (537)
T PLN02246         74 QGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DG-VTVVTI  150 (537)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CC-ceEEEe
Confidence            999999999999999999999999999999999999999999999999999999998776655433211  11 244555


Q ss_pred             cCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccc
Q 010878          180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF  259 (498)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~  259 (498)
                      ++...           ....+.++.... ....+.....++++++++|||||||.||+|+++|++++..+....... ..
T Consensus       151 ~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~-~~  217 (537)
T PLN02246        151 DDPPE-----------GCLHFSELTQAD-ENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE-NP  217 (537)
T ss_pred             CCCCC-----------CceeHHHHhcCC-CCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcc-cc
Confidence            43221           123445544322 112223334678999999999999999999999999988776543211 01


Q ss_pred             cCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhh
Q 010878          260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (498)
Q Consensus       260 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~  337 (498)
                      ...+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|.++..+.+...      
T Consensus       218 ~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------  291 (537)
T PLN02246        218 NLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPV------  291 (537)
T ss_pred             ccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcc------
Confidence            126789999999999999999876 6678999999999877 89999999999999999999999988764211      


Q ss_pred             chHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeec
Q 010878          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYG  416 (498)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG  416 (498)
                                                     ....++        +++|.+++||+++++++.+.+++.+ +..+++.||
T Consensus       292 -------------------------------~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG  332 (537)
T PLN02246        292 -------------------------------VEKYDL--------SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYG  332 (537)
T ss_pred             -------------------------------ccccCc--------cceeEEEEecCcCCHHHHHHHHHHcCCCeEecccc
Confidence                                           001112        3899999999999999999999988 678999999


Q ss_pred             cccCcccccccCC----CCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-c
Q 010878          417 LTETCGPTTVCFP----DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I  491 (498)
Q Consensus       417 ~tE~~~~~~~~~~----~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~  491 (498)
                      +||++.+++....    .....++++|+|+++++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+...| .
T Consensus       333 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~  410 (537)
T PLN02246        333 MTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVD-PETG-ASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDK  410 (537)
T ss_pred             ccccCcccccccccCCCCccccCCccccccCCcEEEEec-CCCC-CcCCCCCceEEEEECCchhccccCCchhhhhcccC
Confidence            9999876554321    1122347899999999999999 4332 344556899999999999999999999999888 7


Q ss_pred             CCccccC
Q 010878          492 DGWFHTG  498 (498)
Q Consensus       492 dGw~~TG  498 (498)
                      +|||+||
T Consensus       411 ~~~~~TG  417 (537)
T PLN02246        411 DGWLHTG  417 (537)
T ss_pred             CCCeeec
Confidence            8999998

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=1.1e-49  Score=416.36  Aligned_cols=384  Identities=21%  Similarity=0.221  Sum_probs=297.6

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCC----CCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKF----GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~----~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~  116 (498)
                      ..++.+.|.+.++++|+++|+++.   ++.+    ..+.++||+||.++++++|++|.+.|+++||+|+++++|++++++
T Consensus         5 ~~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~   81 (552)
T PRK09274          5 MANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFA   81 (552)
T ss_pred             hhhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHH
Confidence            367889999999999999999875   3311    123479999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCc--hhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcC
Q 010878          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK--KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (498)
Q Consensus       117 ~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  194 (498)
                      +++||+++|++++|+++.++.+++.+++++++++++|+++.  ....+....   ....+.++.++....          
T Consensus        82 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~----------  148 (552)
T PRK09274         82 LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRLL----------  148 (552)
T ss_pred             HHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheeccccccc----------
Confidence            99999999999999999999999999999999999999752  222221111   122333443332100          


Q ss_pred             cceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecC
Q 010878          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (498)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (498)
                      .....++++...............++++++++|||||||.||+|+++|.++.+.+......+     ++.++|+.++.+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p  223 (552)
T PRK09274        149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFP  223 (552)
T ss_pred             cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccC
Confidence            01123455442221122222334678999999999999999999999999999888877766     7888999999999


Q ss_pred             hHHHHHHHHHHHHHHcCcEEEEeC--------CChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHH
Q 010878          275 LAHILDRVIEEYFFRRGASVGYYH--------GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (498)
Q Consensus       275 l~h~~g~~~~~~~l~~G~~~~~~~--------~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (498)
                      ++|.+++       ..|+++++.+        .++..+++.|+++++|+++++|++++.+++......            
T Consensus       224 l~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------  284 (552)
T PRK09274        224 LFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG------------  284 (552)
T ss_pred             HHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC------------
Confidence            9886543       4577777653        278999999999999999999999999876432110            


Q ss_pred             HHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc--CCceEeeeccccCcccc
Q 010878          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPT  424 (498)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--g~~l~~~YG~tE~~~~~  424 (498)
                                               .++        ++||.+++||+++++++.+++++.+  |+++++.||+||+++++
T Consensus       285 -------------------------~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~  331 (552)
T PRK09274        285 -------------------------IKL--------PSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPIS  331 (552)
T ss_pred             -------------------------CCC--------chhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeE
Confidence                                     111        3899999999999999999999998  46999999999998766


Q ss_pred             cccCCC---------CccccCccccCcCCceEEeeecCCC-------CCCCCCCCCCCeEEEecCCCcccccCCchhhhh
Q 010878          425 TVCFPD---------EMCMVGTAGPVSVYSELRLEEVPEM-------GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE  488 (498)
Q Consensus       425 ~~~~~~---------~~~~~~s~G~~~~g~~i~ivd~~~~-------~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~  488 (498)
                      +.....         ......++|+|+||++++|+| +++       +..+++.|+.|||+|+|++++.|||++++.+..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~  410 (552)
T PRK09274        332 SIESREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRL  410 (552)
T ss_pred             eecchhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhh
Confidence            544321         011223789999999999999 432       223556679999999999999999999999987


Q ss_pred             hc---cCC--ccccC
Q 010878          489 SI---IDG--WFHTG  498 (498)
Q Consensus       489 ~f---~dG--w~~TG  498 (498)
                      .|   .+|  ||+||
T Consensus       411 ~~~~~~~g~~w~~TG  425 (552)
T PRK09274        411 AKIPDGQGDVWHRMG  425 (552)
T ss_pred             hhcccCCCCcEEEcC
Confidence            76   367  99998

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.1e-49  Score=412.35  Aligned_cols=396  Identities=20%  Similarity=0.277  Sum_probs=306.4

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ...|+.+.|.+.++.+|+++|+++.    +     +++||.||.+++.++|+.|.+ .|+++||+|+++++|++++++++
T Consensus        22 ~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~   92 (562)
T PRK05677         22 EYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAV   92 (562)
T ss_pred             ccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence            3468999999999999999999863    3     489999999999999999997 59999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCc--HHHHHHH-h----
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--AEQKEMA-V----  191 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~--~~~~~~~-~----  191 (498)
                      |||+++|++++|+++..+.+++.+++++++++++|++......+.+... . ...+.++..+...  ....... .    
T Consensus        93 la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
T PRK05677         93 FGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLP-K-TGVKHVIVTEVADMLPPLKRLLINAVVK  170 (562)
T ss_pred             HHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhh-c-cCcceeEEecccccccchhhhhcccchh
Confidence            9999999999999999999999999999999999998766554333221 1 1233333322110  0000000 0    


Q ss_pred             -------h-cCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCC
Q 010878          192 -------Q-TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (498)
Q Consensus       192 -------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~  263 (498)
                             . .......+.+.+..............++++++++|||||||.||+|.++|.+++.........+   ...+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~  247 (562)
T PRK05677        171 HVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALM---GSNL  247 (562)
T ss_pred             hccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHh---ccCC
Confidence                   0 0001233444443332222223344678999999999999999999999999988766554433   1123


Q ss_pred             C-CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhch
Q 010878          264 T-VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (498)
Q Consensus       264 ~-~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~  339 (498)
                      . ..+++++.+|++|.+++.. ++.++..|++.++.+.  ++..+++.|+++++|+++++|.++..+++...        
T Consensus       248 ~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------  319 (562)
T PRK05677        248 NEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA--------  319 (562)
T ss_pred             CCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc--------
Confidence            3 3478899999999999875 6667888888777654  88999999999999999999999988765210        


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeecccc
Q 010878          340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE  419 (498)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE  419 (498)
                                                   ....++        +++|.+++||+++++++.+.+++.+|+++++.||+||
T Consensus       320 -----------------------------~~~~~~--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE  362 (562)
T PRK05677        320 -----------------------------FRKLDF--------SALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTE  362 (562)
T ss_pred             -----------------------------cccCCh--------hhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccc
Confidence                                         001112        2899999999999999999999988999999999999


Q ss_pred             CcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       420 ~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      ++.++....... ..++++|+|+++++++|+| +++..+  +.|+.|||+|+|+.++.||+++++.+++.| .+|||+||
T Consensus       363 ~~~~~~~~~~~~-~~~~~vG~~~~~~~v~i~d-~~~~~~--~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG  438 (562)
T PRK05677        363 TSPVVSVNPSQA-IQVGTIGIPVPSTLCKVID-DDGNEL--PLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTG  438 (562)
T ss_pred             cCcceeecCccC-CCCCccCccCCCCEEEEEC-CCCCCC--CCCCCeEEEEecCccchhhcCCchhhhhccCCCCccccc
Confidence            987776654432 2347899999999999999 776654  455899999999999999999999999999 69999998

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=4.6e-49  Score=410.16  Aligned_cols=399  Identities=22%  Similarity=0.245  Sum_probs=313.7

Q ss_pred             ecCcCCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 010878           26 RNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG  105 (498)
Q Consensus        26 r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~  105 (498)
                      |....-+++..    ..++.+.+.+.++.+|+++|++..   +...+.+..+||.||.+++.++|..|++.|+++|++|+
T Consensus        10 ~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~   82 (538)
T TIGR03208        10 RAASKAAGLWR----DRTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVS   82 (538)
T ss_pred             hhhhhhcCccc----cCcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            34444455443    258999999999999999999864   22223346899999999999999999999999999999


Q ss_pred             EEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH----HhhcccccccCCccEEEEecC
Q 010878          106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTS  181 (498)
Q Consensus       106 i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~  181 (498)
                      ++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++....    .............+.++.++.
T Consensus        83 i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (538)
T TIGR03208        83 FQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDG  162 (538)
T ss_pred             EECCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecC
Confidence            9999999999999999999999999999999999999999999999999875421    111111122234455666543


Q ss_pred             CcHHHHHHHhhcCcceeeHHHHHhccccc--c-----ccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhh
Q 010878          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVN--E-----MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL  254 (498)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~  254 (498)
                      ...             ..++.++......  +     .......++++++++|||||||.||+|+++|.++...+.....
T Consensus       163 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~  229 (538)
T TIGR03208       163 DGD-------------DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE  229 (538)
T ss_pred             CCC-------------cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHh
Confidence            211             1233322211000  0     1112346789999999999999999999999999998887766


Q ss_pred             hhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHH
Q 010878          255 FLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK  332 (498)
Q Consensus       255 ~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~  332 (498)
                      .+     ++..+|++++.+|++|..|+.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+......
T Consensus       230 ~~-----~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~  304 (538)
T TIGR03208       230 RL-----ELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKE  304 (538)
T ss_pred             hc-----CCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhc
Confidence            65     7788999999999999998876 7788999999988776 999999999999999999999999887653221


Q ss_pred             HHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceE
Q 010878          333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLV  412 (498)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~  412 (498)
                      ...                                             ..+++|.+++||+++++++.+++.+.+|++++
T Consensus       305 ~~~---------------------------------------------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~  339 (538)
T TIGR03208       305 SGA---------------------------------------------PVPSLFTFLCAGAPIPGILVERAWELLGALIV  339 (538)
T ss_pred             cCC---------------------------------------------CCCcceEEEEcCCCCCHHHHHHHHHHcCCeEE
Confidence            100                                             01389999999999999999999988999999


Q ss_pred             eeeccccCcccccccCCCCc-cccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhcc
Q 010878          413 QGYGLTETCGPTTVCFPDEM-CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII  491 (498)
Q Consensus       413 ~~YG~tE~~~~~~~~~~~~~-~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~  491 (498)
                      +.||+||++.+.+....... ....++|+|++|++++|+| +++..+  ..|+.|||+|+|+.++.||+++++.+.. ..
T Consensus       340 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~--~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~  415 (538)
T TIGR03208       340 SAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKL--SQGETGRLLVRGCSNFGGYLKRPHLNST-DA  415 (538)
T ss_pred             eeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCC--cCCCCcEEEEecCcccccccCCcccccc-cC
Confidence            99999999877665543321 2235789999999999999 776654  4558999999999999999999987642 37


Q ss_pred             CCccccC
Q 010878          492 DGWFHTG  498 (498)
Q Consensus       492 dGw~~TG  498 (498)
                      +|||+||
T Consensus       416 ~~~~~TG  422 (538)
T TIGR03208       416 EGWFDTG  422 (538)
T ss_pred             CCceecc
Confidence            8999998

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=6.8e-49  Score=407.17  Aligned_cols=392  Identities=21%  Similarity=0.260  Sum_probs=311.9

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      .+++.+++++.++++|+++|+++.   + ..+.++++||.||.++++++|+.|.++|+++||+|+++++|+.+++++++|
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~---~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la   81 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFE---S-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG   81 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcc---c-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            368999999999999999999876   4 334457899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++++++..+.+++.+++++++++.+|++.+....+.+...+.....+.++..+.....        ......+
T Consensus        82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  153 (517)
T PRK08008         82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSSF  153 (517)
T ss_pred             HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc--------cccccCH
Confidence            99999999999999999999999999999999999887666554433333445556555442110        0113345


Q ss_pred             HHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH
Q 010878          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (498)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g  280 (498)
                      +++............+..++++++++|||||||.||+|+++|.+++..........     .+..++++++.+|++|..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  228 (517)
T PRK08008        154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-----ALRDDDVYLTVMPAFHIDC  228 (517)
T ss_pred             HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-----CCCCCCeEEEecCcHHHHH
Confidence            55443321111122334568999999999999999999999999986543322222     5678999999999999877


Q ss_pred             HHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 010878          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (498)
Q Consensus       281 ~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (498)
                      ... ++.++..|+++++.+. ++..+++.++++++|++.++|.+++.++.......                        
T Consensus       229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------  284 (517)
T PRK08008        229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN------------------------  284 (517)
T ss_pred             HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc------------------------
Confidence            766 6778999999999877 89999999999999999999999988754211000                        


Q ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCcc
Q 010878          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~  438 (498)
                                   ...        .+++.+..+ .+++++..+.+.+.++.++++.||+||+++.++...........++
T Consensus       285 -------------~~~--------~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  342 (517)
T PRK08008        285 -------------DRQ--------HCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSI  342 (517)
T ss_pred             -------------ccc--------ccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCcc
Confidence                         000        256777665 4789999999998899999999999999876665544444455789


Q ss_pred             ccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec---CCCcccccCCchhhhhhc-cCCccccC
Q 010878          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG---KTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       439 G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g---~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      |.|++|++++|+| +++..++  .|+.|||+++|   ++++.||+++++.+.+.| .+|||+||
T Consensus       343 G~~~~g~~~~i~d-~~~~~~~--~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TG  403 (517)
T PRK08008        343 GRPGFCYEAEIRD-DHNRPLP--AGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTG  403 (517)
T ss_pred             ccCCCCcEEEEEC-CCCCCCC--CCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeecc
Confidence            9999999999999 7766554  45899999998   699999999999999999 79999998

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.7e-49  Score=410.51  Aligned_cols=394  Identities=24%  Similarity=0.318  Sum_probs=313.9

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEA  117 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~g~~V~i~~~n~~~~~~~  117 (498)
                      -+..++.++|.+.++.+|+++|+++.   +      +++||+||.+++.++|..|.+. |+++|++|+++++|+++++++
T Consensus         7 ~~~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~   77 (546)
T PRK08314          7 LPETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIA   77 (546)
T ss_pred             CCCCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHH
Confidence            34568999999999999999999875   3      4899999999999999999999 999999999999999999999


Q ss_pred             HHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcH--HHHHH------
Q 010878          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--EQKEM------  189 (498)
Q Consensus       118 ~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~--~~~~~------  189 (498)
                      ++||+++|++++|+++.++.+++.++++.+++++++++......+.......  ..+.++.......  .....      
T Consensus        78 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (546)
T PRK08314         78 YYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWL  155 (546)
T ss_pred             HHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCccccc
Confidence            9999999999999999999999999999999999999988776654432221  2333333221000  00000      


Q ss_pred             ------HhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCC
Q 010878          190 ------AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (498)
Q Consensus       190 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~  263 (498)
                            ..........|++......  ........++++++++|||||||.||+|.++|.+++.++......+     .+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~  228 (546)
T PRK08314        156 RAEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NS  228 (546)
T ss_pred             ccccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CC
Confidence                  0000112234555543321  1123345678999999999999999999999999999888776665     78


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHH
Q 010878          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (498)
Q Consensus       264 ~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~  341 (498)
                      ..+|++++.+|++|..|+.. ++.++..|+++++.+. ++..+.+.++++++|++.++|.++..++...           
T Consensus       229 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~-----------  297 (546)
T PRK08314        229 TPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASP-----------  297 (546)
T ss_pred             CCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCC-----------
Confidence            89999999999999999876 6688999999999886 8999999999999999999999998876411           


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCc
Q 010878          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC  421 (498)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~  421 (498)
                                                ..+..++        +++|.+++||+++++++.+++.+.++.++++.||+||++
T Consensus       298 --------------------------~~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  343 (546)
T PRK08314        298 --------------------------GLAERDL--------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETM  343 (546)
T ss_pred             --------------------------CccccCc--------hhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccc
Confidence                                      0111122        278999999999999999999998999999999999998


Q ss_pred             ccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhcc--C--Ccccc
Q 010878          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHT  497 (498)
Q Consensus       422 ~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~--d--Gw~~T  497 (498)
                      ..+........ ..+++|.|++|++++|+|.+++..+  +.|+.|||+|+|++++.||+++++.+.+.|.  +  +||+|
T Consensus       344 ~~~~~~~~~~~-~~~~~G~~~~g~~~~i~d~~~~~~~--~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~T  420 (546)
T PRK08314        344 AQTHSNPPDRP-KLQCLGIPTFGVDARVIDPETLEEL--PPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRT  420 (546)
T ss_pred             cceecCCCcCC-CCCccCcccCCeEEEEEeCCCCcCC--CCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEec
Confidence            87665544332 3478999999999999993334434  4558999999999999999999999988872  3  49999


Q ss_pred             C
Q 010878          498 G  498 (498)
Q Consensus       498 G  498 (498)
                      |
T Consensus       421 G  421 (546)
T PRK08314        421 G  421 (546)
T ss_pred             C
Confidence            8

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-49  Score=413.02  Aligned_cols=392  Identities=21%  Similarity=0.194  Sum_probs=298.9

Q ss_pred             CCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 010878           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (498)
Q Consensus        36 ~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~  115 (498)
                      +++..+.++.+.|.+.++++|+++|+++.   ++.    +.+||+||.++++++|+.|.+.|+++|++|+++++|+++++
T Consensus         8 ~~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~   80 (540)
T PRK05857          8 AMPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETY   80 (540)
T ss_pred             ccccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHH
Confidence            34455678999999999999999999865   442    57999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCc
Q 010878          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (498)
Q Consensus       116 ~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  195 (498)
                      ++++||+++|++++|+++..+.+++.++++.++++.+|+++...... ........... ++.++......         
T Consensus        81 ~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~---------  149 (540)
T PRK05857         81 LSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVTR---------  149 (540)
T ss_pred             HHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeecccccc---------
Confidence            99999999999999999999999999999999999999998653221 11111111221 22232211000         


Q ss_pred             ceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecCh
Q 010878          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (498)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  275 (498)
                        ...+.+ ..  ..........++++++++|||||||.||+|.++|.++.++........ ........++++++.+|+
T Consensus       150 --~~~~~~-~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~  223 (540)
T PRK05857        150 --ESEHSL-DA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEG-LNWVTWVVGETTYSPLPA  223 (540)
T ss_pred             --cccccc-cc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcc-ccccccccCceeeecCCc
Confidence              000000 00  001112234578999999999999999999999999987654432110 000145667899999999


Q ss_pred             HHHHHHHHHHHHHHcCcEEEEeCCChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010878          276 AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (498)
Q Consensus       276 ~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (498)
                      +|..++...+.+++.|+++++.+.++..+++.++++++|+++++|.+++.+++.....                      
T Consensus       224 ~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~----------------------  281 (540)
T PRK05857        224 THIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA----------------------  281 (540)
T ss_pred             cccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccC----------------------
Confidence            9999998888889999998876668999999999999999999999999886532110                      


Q ss_pred             HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC----
Q 010878          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----  431 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~----  431 (498)
                                     ..++        +++|.+++||++++....+++ +.+|+++++.||+||++..........    
T Consensus       282 ---------------~~~~--------~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~  337 (540)
T PRK05857        282 ---------------NATV--------PSLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSETGCTALCLPTDDGSIV  337 (540)
T ss_pred             ---------------CCcC--------ccceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcCCceeeeccccccccc
Confidence                           0111        389999999999998877644 467999999999999986443332211    


Q ss_pred             ccccCccccCcCCceEEeeecCCCCCCC----CCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          432 MCMVGTAGPVSVYSELRLEEVPEMGYSP----LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       432 ~~~~~s~G~~~~g~~i~ivd~~~~~~~~----~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ...++++|+|++|++++|+| +++....    .+.++.|||+|+|++++.||+++++.+.+.|.||||+||
T Consensus       338 ~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TG  407 (540)
T PRK05857        338 KIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTG  407 (540)
T ss_pred             ccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceecc
Confidence            11347899999999999999 6655321    134588999999999999999999999999999999998

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.8e-49  Score=407.83  Aligned_cols=378  Identities=19%  Similarity=0.170  Sum_probs=304.0

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~  121 (498)
                      .++.++|.+.++++||++|+++.   +      .++||.||.++++++|++|.+.|+++|++|+++++|+++++++++||
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~  113 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA  113 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence            57999999999999999999864   2      48999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHH
Q 010878          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (498)
Q Consensus       122 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  201 (498)
                      +++|++++|+++.++.+++.++++.++++++|++......+.+.... .+....++...+...            ...++
T Consensus       114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~  180 (537)
T PRK13382        114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALAD-CPQATRIVAWTDEDH------------DLTVE  180 (537)
T ss_pred             HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhh-ccccceEEEecCCcc------------cccHH
Confidence            99999999999999999999999999999999998766554332211 122233333322110            12344


Q ss_pred             HHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHH
Q 010878          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (498)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~  281 (498)
                      ++...... .  .....+++.++++|||||||.||+|.++|.+++.........+     .+..+|++++..|++|.+|+
T Consensus       181 ~~~~~~~~-~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~  252 (537)
T PRK13382        181 VLIAAHAG-Q--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGF  252 (537)
T ss_pred             HHhhccCc-C--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHH
Confidence            44332111 1  1123467889999999999999999999999888777766555     67789999999999999999


Q ss_pred             HHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccc
Q 010878          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (498)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (498)
                      ..++.++..|+++++.+. ++..+++.|+++++|++.++|.+++.+++.....                           
T Consensus       253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------------  305 (537)
T PRK13382        253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV---------------------------  305 (537)
T ss_pred             HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchh---------------------------
Confidence            878889999999988765 8999999999999999999999999886521100                           


Q ss_pred             CCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCcccc
Q 010878          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (498)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~  440 (498)
                              .+..++        +++|.+++||+++++++.+.+.+.+|.++++.||+||++.+++.........++++|+
T Consensus       306 --------~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~  369 (537)
T PRK13382        306 --------RNRYSG--------RSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGR  369 (537)
T ss_pred             --------cccCCc--------cceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccc
Confidence                    001111        3799999999999999999999999999999999999987766554332334579999


Q ss_pred             CcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       441 ~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      |++|++++|+| +++..++  .|+.|||+++|++++.||+  ++.+. .|.+|||+||
T Consensus       370 p~~~~~~~i~d-~~~~~~~--~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TG  421 (537)
T PRK13382        370 PAEGTEIRILD-QDFREVP--TGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASG  421 (537)
T ss_pred             cCcCcEEEEEC-CCCCCCC--CCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeC
Confidence            99999999999 7776554  4589999999999999998  44443 3568999998

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.6e-49  Score=418.02  Aligned_cols=402  Identities=17%  Similarity=0.141  Sum_probs=305.0

Q ss_pred             CceecCcCCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCC---CCCCceeeeHHHHHHHHHHHHHHHHHcCCC
Q 010878           23 PVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAE   99 (498)
Q Consensus        23 ~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~---~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~   99 (498)
                      +.|.++...+..-.. +...++.++|+++++.+|+++|+++.   +.   .++.++.+||+||.++++++|+.|++. ++
T Consensus         3 ~~~~~~~~~~~~~~~-~~~~~l~~~l~~~a~~~~~~~a~~~~---~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~   77 (631)
T PRK07769          3 MAFHNPFDVNGKIRF-PPNTNLVRHVERWAKVRGDKLAYRFL---DFSTERDGVARDLTWSQFGARNRAVGARLQQV-TK   77 (631)
T ss_pred             cccCCcccccccccc-cccCCHHHHHHHHHHhCCCCeEEEEe---ccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cC
Confidence            456666666655433 45578999999999999999999874   31   123346899999999999999999987 89


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHHcCCeEeec-CCCCC--hhHHHHHHhhcCccEEEEcCchhHHhhccccccc-CCccE
Q 010878          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRV  175 (498)
Q Consensus       100 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~  175 (498)
                      +||+|+++++|++++++++|||+++|++++|+ ++..+  .+++.+++++++++++|++......+.+...... .....
T Consensus        78 ~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  157 (631)
T PRK07769         78 PGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPR  157 (631)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccce
Confidence            99999999999999999999999999999999 45543  5789999999999999999876554433211110 01123


Q ss_pred             EEEecCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhh
Q 010878          176 MVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF  255 (498)
Q Consensus       176 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~  255 (498)
                      ++.++....                  ..    .......+..++++++|+|||||||.||+|+++|.++...+......
T Consensus       158 ~~~~~~~~~------------------~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~  215 (631)
T PRK07769        158 VIAVDAVPD------------------EV----GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDA  215 (631)
T ss_pred             EEEcccccc------------------cc----ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHH
Confidence            333321110                  00    00011123457899999999999999999999999999888776665


Q ss_pred             hccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCC---cEEEecchHHHHHH
Q 010878          256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKP---TLLAGVPRVFEKIH  327 (498)
Q Consensus       256 ~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~---t~l~~~P~~~~~l~  327 (498)
                      +     ++..+|++++++|++|.+|+..++.+++.|+++++++.     ++..+++.++++++   +++..+|.++..++
T Consensus       216 ~-----~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~  290 (631)
T PRK07769        216 L-----EGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHA  290 (631)
T ss_pred             c-----CCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHH
Confidence            5     78889999999999999999887778888999888742     88899999999886   78999999887665


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc
Q 010878          328 EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC  407 (498)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~  407 (498)
                      .....     +                           .......++        ++||.+++||+++++++.++|.+.|
T Consensus       291 ~~~~~-----~---------------------------~~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~  330 (631)
T PRK07769        291 AARGL-----P---------------------------KDGEPPLDL--------SNVKGLLNGSEPVSPASMRKFNEAF  330 (631)
T ss_pred             Hhhcc-----c---------------------------hhcccCcch--------hheeeEEeccCCCCHHHHHHHHHHH
Confidence            31100     0                           000001223        3899999999999999999999987


Q ss_pred             ---CC---ceEeeeccccCcccccccCCCCc--------------------------cccCccccCcCCceEEeeecCCC
Q 010878          408 ---CA---FLVQGYGLTETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPEM  455 (498)
Q Consensus       408 ---g~---~l~~~YG~tE~~~~~~~~~~~~~--------------------------~~~~s~G~~~~g~~i~ivd~~~~  455 (498)
                         |+   .+++.||+||++.+++.......                          ....++|+|+++++++|+|.+++
T Consensus       331 ~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g  410 (631)
T PRK07769        331 APYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETA  410 (631)
T ss_pred             hhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCC
Confidence               33   59999999999876654432110                          01257999999999999993344


Q ss_pred             CCCCCCCCCCCeEEEecCCCcccccCCchhhhhhcc------------------CCccccC
Q 010878          456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------------DGWFHTG  498 (498)
Q Consensus       456 ~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~------------------dGw~~TG  498 (498)
                      ..  ++.|+.|||+|+|++++.|||++++.+++.|.                  +|||+||
T Consensus       411 ~~--~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TG  469 (631)
T PRK07769        411 SE--LPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTG  469 (631)
T ss_pred             cC--CCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeecc
Confidence            44  44569999999999999999999999998883                  4899998

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.8e-49  Score=406.95  Aligned_cols=392  Identities=28%  Similarity=0.392  Sum_probs=329.1

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ....++.++|.+.++.+|+++|+.+.   +      ..+||+||++++.++|+.|.+.|+++|++|+++++|++++++++
T Consensus         3 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~   73 (521)
T PRK06187          3 DYPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAY   73 (521)
T ss_pred             cccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            45678999999999999999999875   4      36999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      +||+++|++++|+++..+.+++..+++.+++++++++.+....+.+... ..+..+.++.+++....      .......
T Consensus        74 la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~  146 (521)
T PRK06187         74 FAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILP-QLPTVRTVIVEGDGPAA------PLAPEVG  146 (521)
T ss_pred             HHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhh-ccCCccEEEEecCcccc------ccccccc
Confidence            9999999999999999999999999999999999999887766544332 33445666666554321      1112345


Q ss_pred             eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                      .+++++..... .........+++++++|||||||.||+|.++|.++..........+     ++..+|++++.+|++|.
T Consensus       147 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~  220 (521)
T PRK06187        147 EYEELLAAASD-TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHV  220 (521)
T ss_pred             cHHHHhhcCCc-cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHH
Confidence            56666554322 2223345678899999999999999999999999998888876665     88999999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 010878          279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (498)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (498)
                      +++...+.++..|+++++.+. ++..+++.++++++|.++++|.+++.+.+....                         
T Consensus       221 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~-------------------------  275 (521)
T PRK06187        221 HAWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRA-------------------------  275 (521)
T ss_pred             hhHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCC-------------------------
Confidence            999887779999999998876 999999999999999999999999998753221                         


Q ss_pred             cccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCc-----
Q 010878          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-----  432 (498)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~-----  432 (498)
                                  ...++        +++|.+++||++++.++.+++.+.+++++++.||+||+++++........     
T Consensus       276 ------------~~~~~--------~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  335 (521)
T PRK06187        276 ------------YFVDF--------SSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQW  335 (521)
T ss_pred             ------------CccCc--------chhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCccccccccc
Confidence                        01112        38999999999999999999999889999999999999887776654333     


Q ss_pred             cccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       433 ~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ...+++|+|+++++++|+| +++..++.+.|+.|||+++|+.++.||+++++.+.+.|.+|||+||
T Consensus       336 ~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tG  400 (521)
T PRK06187        336 TKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTG  400 (521)
T ss_pred             ccCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceecc
Confidence            2458999999999999999 8877666644799999999999999999999999999999999998

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.3e-49  Score=410.96  Aligned_cols=398  Identities=26%  Similarity=0.380  Sum_probs=313.7

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...++.+++++.++++|+++|+++.    +     +.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++
T Consensus        30 ~~~~l~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~l  100 (573)
T PRK05605         30 GDTTLVDLYDNAVARFGDRPALDFF----G-----ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFY  100 (573)
T ss_pred             CcCCHHHHHHHHHHHCCCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            3458999999999999999999874    3     479999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHH--H---------
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK--E---------  188 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--~---------  188 (498)
                      ||+++|++++|+++.++.+++.+++++++++++|+++.....+.+....  ...+.++.++.......  .         
T Consensus       101 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  178 (573)
T PRK05605        101 AVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPA  178 (573)
T ss_pred             HHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeeccccccccccccccccccc
Confidence            9999999999999999999999999999999999988765554332211  12333333321100000  0         


Q ss_pred             ------HHhhcCcceeeHHHHHhccccc---cccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccc
Q 010878          189 ------MAVQTGIKPYSWDEFLHLGKVN---EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF  259 (498)
Q Consensus       189 ------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~  259 (498)
                            ...........|+++.......   .........+++++++|||||||.||+|.++|.+++..+......+   
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---  255 (573)
T PRK05605        179 LRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWV---  255 (573)
T ss_pred             ccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhc---
Confidence                  0000011234566665432111   0122234678999999999999999999999999988776543322   


Q ss_pred             cCC-CCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHh
Q 010878          260 EDK-MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (498)
Q Consensus       260 ~~~-~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~  336 (498)
                       .+ ...++++++.+|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.+++.+++.....   
T Consensus       256 -~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~---  331 (573)
T PRK05605        256 -PGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEER---  331 (573)
T ss_pred             -cccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCcccc---
Confidence             11 234789999999999999876 5567999999988876 9999999999999999999999999987632111   


Q ss_pred             hchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeec
Q 010878          337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG  416 (498)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG  416 (498)
                                                        ..++        ++||.+++||+++++++.+++.+.++.++++.||
T Consensus       332 ----------------------------------~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG  369 (573)
T PRK05605        332 ----------------------------------GVDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYG  369 (573)
T ss_pred             ----------------------------------CCCc--------hhccEEEECCCcCCHHHHHHHHHHhCCCeecccc
Confidence                                              0111        2799999999999999999999888999999999


Q ss_pred             cccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccc
Q 010878          417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH  496 (498)
Q Consensus       417 ~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~  496 (498)
                      +||+++++..........++++|+|++|++++|+| +++...+++.|+.|||+++|+.++.||+++++.+.+.|.+|||+
T Consensus       370 ~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~  448 (573)
T PRK05605        370 LTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFR  448 (573)
T ss_pred             cchhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcc
Confidence            99999877766554444458999999999999999 66533455566899999999999999999999999999889999


Q ss_pred             cC
Q 010878          497 TG  498 (498)
Q Consensus       497 TG  498 (498)
                      ||
T Consensus       449 TG  450 (573)
T PRK05605        449 TG  450 (573)
T ss_pred             cC
Confidence            98

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7e-49  Score=405.18  Aligned_cols=371  Identities=23%  Similarity=0.285  Sum_probs=303.8

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..+.+.|++.++.+||++|+++.    +     +.+||.||.++++++|+.|++ .|+++|++|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la   72 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA   72 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            46889999999999999999863    3     589999999999999999985 7999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++|+++..+.+++..+++.++++++++++.....+.+... . .....++.+.+                  +
T Consensus        73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~------------------~  132 (496)
T PRK06839         73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQK-V-SYVQRVISITS------------------L  132 (496)
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhh-c-cCcceEEEecc------------------h
Confidence            99999999999999999999999999999999999876655433211 1 12223333331                  2


Q ss_pred             HHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH
Q 010878          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (498)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g  280 (498)
                      +++....   ........++++++++|||||||.||+|.++|.++..........+     ++..+|++++.+|++|.+|
T Consensus       133 ~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  204 (496)
T PRK06839        133 KEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGG  204 (496)
T ss_pred             HhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhh
Confidence            2222111   1122234568899999999999999999999999887666554444     6788999999999999999


Q ss_pred             HHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 010878          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (498)
Q Consensus       281 ~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (498)
                      +.. ++.++..|+++++.+. ++..+++.++++++|++.++|.+++.+++....                          
T Consensus       205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------  258 (496)
T PRK06839        205 IGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKF--------------------------  258 (496)
T ss_pred             HHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCccc--------------------------
Confidence            876 5678999999988766 999999999999999999999999998753210                          


Q ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCC-CccccCc
Q 010878          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGT  437 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~-~~~~~~s  437 (498)
                                 ...++        +++|.+++||+++++++.+.+++. |+++.+.||+||++..+...... .....++
T Consensus       259 -----------~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  318 (496)
T PRK06839        259 -----------ETTNL--------QSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGS  318 (496)
T ss_pred             -----------ccCCC--------cccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCC
Confidence                       00111        389999999999999999999887 99999999999998765444332 2344589


Q ss_pred             cccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       438 ~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      +|+|+++++++|+| +++..  ++.|+.|||+|+|+.++.||+++++.+...+.+|||+||
T Consensus       319 ~G~p~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG  376 (496)
T PRK06839        319 IGKPVLFCDYELID-ENKNK--VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTG  376 (496)
T ss_pred             CcccCCCceEEEEC-CCcCC--CCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeec
Confidence            99999999999999 77776  445589999999999999999999999888899999998

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.3e-48  Score=407.97  Aligned_cols=402  Identities=21%  Similarity=0.281  Sum_probs=317.1

Q ss_pred             CCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHH
Q 010878           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWV  115 (498)
Q Consensus        37 ~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~g~~V~i~~~n~~~~~  115 (498)
                      ..+...|+.++|++++..+|+++|+++.   +.   .++.+||.||.+++.++|++|.+ .|+++||+|+++++|+++++
T Consensus         5 ~~~~~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~   78 (576)
T PRK05620          5 MQDVPLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHL   78 (576)
T ss_pred             hhcCCCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHH
Confidence            3345578999999999999999998864   22   23789999999999999999986 79999999999999999999


Q ss_pred             HHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCc
Q 010878          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (498)
Q Consensus       116 ~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  195 (498)
                      ++++||+++|++++|+++..+.+++.++++.++++++|++......+.+.... .+..+.++.++...............
T Consensus        79 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~  157 (576)
T PRK05620         79 EVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKE-CPCVRAVVFIGPSDADSAAAHMPEGI  157 (576)
T ss_pred             HHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhh-CccccEEEEecCcccccchhcccccc
Confidence            99999999999999999999999999999999999999998776665444332 34555566655432211111111223


Q ss_pred             ceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhh--hhhccccCCCCCCcEEEEec
Q 010878          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD--LFLDQFEDKMTVDDVYLSFL  273 (498)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~--~~~~~~~~~~~~~d~~l~~~  273 (498)
                      ...+|+++...... ........++++++++|||||||.||+|.++|.++........  ..+     .+..+|++++.+
T Consensus       158 ~~~~~~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~  231 (576)
T PRK05620        158 KVYSYEALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-----AVTHGESFLCCV  231 (576)
T ss_pred             ccccHHHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-----CCCCCCeEEEeC
Confidence            34567887754322 1222335678999999999999999999999999865544321  122     678899999999


Q ss_pred             ChHHHHHHHHHHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 010878          274 PLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (498)
Q Consensus       274 pl~h~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (498)
                      |++|.+++...+.++..|+++++.+.  ++..+++.++++++|+++++|.++..++.......                 
T Consensus       232 pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------  294 (576)
T PRK05620        232 PIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP-----------------  294 (576)
T ss_pred             ChHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC-----------------
Confidence            99999999888889999999988753  89999999999999999999999988765321110                 


Q ss_pred             HHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC
Q 010878          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~  431 (498)
                                          .+.        .+||.+++||+++++++.+++++.+|+++++.||+||++..++......
T Consensus       295 --------------------~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~  346 (576)
T PRK05620        295 --------------------PER--------MSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPS  346 (576)
T ss_pred             --------------------ccc--------CceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCC
Confidence                                000        2799999999999999999999989999999999999988766543321


Q ss_pred             -------ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhh----------------hh
Q 010878          432 -------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT----------------RE  488 (498)
Q Consensus       432 -------~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~----------------~~  488 (498)
                             .....++|++.+|++++|+| + +..++...++.|||+++|+.++.||+++++.+                .+
T Consensus       347 ~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~  424 (576)
T PRK05620        347 GVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDAND  424 (576)
T ss_pred             ccccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhc
Confidence                   11225789999999999999 5 66555545678999999999999999999887                33


Q ss_pred             hc-cCCccccC
Q 010878          489 SI-IDGWFHTG  498 (498)
Q Consensus       489 ~f-~dGw~~TG  498 (498)
                      .| .+|||+||
T Consensus       425 ~~~~~g~~~TG  435 (576)
T PRK05620        425 RFTADGWLRTG  435 (576)
T ss_pred             ccccCCcEecC
Confidence            34 57999998

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=3.1e-48  Score=404.83  Aligned_cols=384  Identities=21%  Similarity=0.291  Sum_probs=308.8

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~  121 (498)
                      .++.++|++.++.+||++|+++.   ++     +.+||+||.++++++|+.|++.|+++||+|+++++|+++++++++||
T Consensus        23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~   94 (547)
T PRK06087         23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC   94 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            57999999999999999999864   43     48999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh-----HHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010878          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (498)
Q Consensus       122 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (498)
                      +++|++++|+++..+.+++.++++.+++++++++....     ..+.... ......+.++.++.....         ..
T Consensus        95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~  164 (547)
T PRK06087         95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQ-NQLPQLQQIVGVDKLAPA---------TS  164 (547)
T ss_pred             HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHH-hhCCCCcEEEEeCCcCCC---------cC
Confidence            99999999999999999999999999999999976321     1222111 122344456555543211         01


Q ss_pred             eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010878          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                      ..++.++....... ........+++++++|||||||.||+|.++|.+++.........+     ++.++|++++.+|++
T Consensus       165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~  238 (547)
T PRK06087        165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLG  238 (547)
T ss_pred             ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchH
Confidence            22455554432111 112234678999999999999999999999999988877766555     788999999999999


Q ss_pred             HHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       277 h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      |.+|+.. ++.+++.|+++++.+. ++..+++.++++++|+++++|.++..+++.....                     
T Consensus       239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~---------------------  297 (547)
T PRK06087        239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ---------------------  297 (547)
T ss_pred             HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC---------------------
Confidence            9999876 6778999999998876 9999999999999999998888776665422110                     


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC-cc
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MC  433 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~-~~  433 (498)
                                      ..++        +++|.+++||+++++++.+.+.+. |+++++.||+||++.+........ ..
T Consensus       298 ----------------~~~~--------~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~  352 (547)
T PRK06087        298 ----------------PADL--------SALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSR  352 (547)
T ss_pred             ----------------CCCC--------CCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhh
Confidence                            0011        389999999999999999988875 999999999999988766554332 22


Q ss_pred             ccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      ..+++|.|++|++++|+| +++..++  .|+.|||+++|+.++.||+++++.+...| .+|||+||
T Consensus       353 ~~~~~G~~~~~~~~~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TG  415 (547)
T PRK06087        353 FMHTDGYAAAGVEIKVVD-EARKTLP--PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSG  415 (547)
T ss_pred             cCCcCCccCCCceEEEEc-CCCCCCc--CCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcC
Confidence            336789999999999999 7776554  55899999999999999999999998888 78999998

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=2.2e-48  Score=404.07  Aligned_cols=383  Identities=18%  Similarity=0.153  Sum_probs=304.1

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..++.++|+++++.+|+++|+++.    +     +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++|
T Consensus        22 ~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la   92 (527)
T TIGR02275        22 DKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA   92 (527)
T ss_pred             CCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            357999999999999999999864    3     5899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH----HhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (498)
                      |+++|++++++++..+.+++.++++.+++++++++.....    ...+......+..+.++.......            
T Consensus        93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  160 (527)
T TIGR02275        93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV------------  160 (527)
T ss_pred             HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC------------
Confidence            9999999999999999999999999999999999875321    111111111233344444432210            


Q ss_pred             eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010878          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                      ............. ........++++++++|||||||.||+|.++|.++..++......+     .+..+|++++.+|++
T Consensus       161 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~  234 (527)
T TIGR02275       161 EAELFLWLESPAE-PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAA  234 (527)
T ss_pred             cchhhHHhhCcCc-cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChH
Confidence            0011111111111 1122344678999999999999999999999999998888766665     788899999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010878          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (498)
Q Consensus       277 h~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (498)
                      |.+++..  ++.++..|+++++.+. ++..+++.++++++|+++++|.+++.+++......                   
T Consensus       235 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------  295 (527)
T TIGR02275       235 HNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR-------------------  295 (527)
T ss_pred             hhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-------------------
Confidence            9999874  6778999999988765 89999999999999999999999988765322110                   


Q ss_pred             HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcc
Q 010878          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~  433 (498)
                                        .++        +++|.+++||+++++++.+++.+.+|.++++.||+||++...+........
T Consensus       296 ------------------~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~  349 (527)
T TIGR02275       296 ------------------YDL--------SSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEI  349 (527)
T ss_pred             ------------------CCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCcccc
Confidence                              111        389999999999999999999998999999999999976443322211222


Q ss_pred             ccCccccCc-CCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      ..+++|+|+ ++.+++|+| ++++..+  .|+.|||+++|++++.||+++++.+.+.| .||||+||
T Consensus       350 ~~~~~G~~~~~~~~v~i~d-~~g~~~~--~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TG  413 (527)
T TIGR02275       350 IFTTQGRPMSPDDEVRVVD-DHGNPVA--PGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG  413 (527)
T ss_pred             ccccCCCCCCCCceEEEEC-CCCCCCC--CCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcC
Confidence            346899999 589999999 7766444  55899999999999999999999999888 79999998

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=2.8e-48  Score=403.94  Aligned_cols=386  Identities=22%  Similarity=0.254  Sum_probs=310.4

Q ss_pred             CCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 010878           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (498)
Q Consensus        37 ~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~  116 (498)
                      .+...+++.++|+++++.+|+++|+++.   +      ..+||.||.+++.++|..|.+.|+++|++|+++++|++++++
T Consensus        16 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~   86 (542)
T PRK06155         16 LPPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLD   86 (542)
T ss_pred             CCccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHH
Confidence            3456788999999999999999999864   3      489999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010878          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (498)
Q Consensus       117 ~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (498)
                      +++||+++|++++|+++.++.+++..+++.+++++++++.+....+.+.... ....+.++.++......    ..   .
T Consensus        87 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~---~  158 (542)
T PRK06155         87 VFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPG-DLPLPAVWLLDAPASVS----VP---A  158 (542)
T ss_pred             HHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhccc-ccCcceEEEecCccccc----cc---c
Confidence            9999999999999999999999999999999999999998777665443221 12345566655432100    00   0


Q ss_pred             eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010878          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                      .....++...  ..........++++++++|||||||.||+|.++|.++..........+     ++.+++++++.+|++
T Consensus       159 ~~~~~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~  231 (542)
T PRK06155        159 GWSTAPLPPL--DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPLF  231 (542)
T ss_pred             ccchhhhccc--CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCHH
Confidence            0001111110  111122334678999999999999999999999999988776665555     788999999999999


Q ss_pred             HHHHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010878          277 HILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (498)
Q Consensus       277 h~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (498)
                      |..++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+.....                      
T Consensus       232 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~----------------------  289 (542)
T PRK06155        232 HTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARE----------------------  289 (542)
T ss_pred             HHHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc----------------------
Confidence            99999888889999999998876 8999999999999999999999998876521100                      


Q ss_pred             HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcccc
Q 010878          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~  435 (498)
                                     ..+        .+++|.++.||  +++++.+.+++.+++++++.||+||++.++.....  ...+
T Consensus       290 ---------------~~~--------~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~~  342 (542)
T PRK06155        290 ---------------SDR--------AHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQRP  342 (542)
T ss_pred             ---------------ccc--------cCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCCC
Confidence                           000        13788887665  57889999999999999999999999887665432  2344


Q ss_pred             CccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecC---CCcccccCCchhhhhhccCCccccC
Q 010878          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       436 ~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      +++|.++++++++|+| +++..++.  |+.|||+++|+   +++.||+++++.+.+.|.+|||+||
T Consensus       343 ~~vG~~~~~~~~~i~d-~~~~~~~~--g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TG  405 (542)
T PRK06155        343 GSMGRLAPGFEARVVD-EHDQELPD--GEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTG  405 (542)
T ss_pred             CCcCccCCCceEEEEC-CCCCCCCC--CCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEecc
Confidence            7899999999999999 77665554  48999999998   6999999999999988999999998

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=3.3e-48  Score=404.25  Aligned_cols=403  Identities=20%  Similarity=0.248  Sum_probs=311.9

Q ss_pred             CcCCceecCcCCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCC
Q 010878           20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE   99 (498)
Q Consensus        20 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~   99 (498)
                      ..+..||+......    .+...|+.+++.+.++.+|+++|+++.   .+.    +.+||.||.+++.++|+.|.+.|++
T Consensus        10 ~~~~~~~~~~~~~~----~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g~~   78 (546)
T PLN02330         10 DNEHIFRSRYPSVP----VPDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLGLR   78 (546)
T ss_pred             ccceeeccCCCCCC----CCCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhCCC
Confidence            34456676654432    234588999999999999999999863   221    4799999999999999999999999


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEe
Q 010878          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF  179 (498)
Q Consensus       100 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~  179 (498)
                      +||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+...      .. .++.+
T Consensus        79 ~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~------~~-~~i~~  151 (546)
T PLN02330         79 KGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL------GL-PVIVL  151 (546)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc------CC-cEEEe
Confidence            999999999999999999999999999999999999999999999999999999998876655321      11 23344


Q ss_pred             cCCcHHHHHHHhhcCcceeeHHHHHhcccccc--ccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhc
Q 010878          180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD  257 (498)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~  257 (498)
                      ++...          .....|++++.......  .......++++++++|||||||.||+|.++|.++..++....... 
T Consensus       152 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-  220 (546)
T PLN02330        152 GEEKI----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV-  220 (546)
T ss_pred             cCCCC----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc-
Confidence            32211          11234666654332111  112234568899999999999999999999999987765421111 


Q ss_pred             cccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHH
Q 010878          258 QFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (498)
Q Consensus       258 ~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~  335 (498)
                        .......++++.++|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++...    
T Consensus       221 --~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~----  294 (546)
T PLN02330        221 --GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI----  294 (546)
T ss_pred             --CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc----
Confidence              112234578999999999999876 6677999999988776 99999999999999999999999998865210    


Q ss_pred             hhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEee
Q 010878          336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQG  414 (498)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~  414 (498)
                                                       ...+++..      .++|.+++||+++++++.+++.+.| ++++++.
T Consensus       295 ---------------------------------~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~  335 (546)
T PLN02330        295 ---------------------------------VEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEA  335 (546)
T ss_pred             ---------------------------------ccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEec
Confidence                                             11111110      1579999999999999999999988 8999999


Q ss_pred             eccccCcccccccCCCC----ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc
Q 010878          415 YGLTETCGPTTVCFPDE----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  490 (498)
Q Consensus       415 YG~tE~~~~~~~~~~~~----~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f  490 (498)
                      ||+||++.+........    ....+++|.|+||++++|+|.+++.  +++.|+.|||+|+|+.++.||+++++.+.+.|
T Consensus       336 YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~--~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~  413 (546)
T PLN02330        336 YGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGR--SLPKNTPGELCVRSQCVMQGYYNNKEETDRTI  413 (546)
T ss_pred             ccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCc--cCCCCCceEEEEecchhhhhhccCccchhhhc
Confidence            99999986544322111    1234689999999999999933343  44456899999999999999999999998888


Q ss_pred             -cCCccccC
Q 010878          491 -IDGWFHTG  498 (498)
Q Consensus       491 -~dGw~~TG  498 (498)
                       .+|||+||
T Consensus       414 ~~~g~~~TG  422 (546)
T PLN02330        414 DEDGWLHTG  422 (546)
T ss_pred             cCCCceecc
Confidence             78999998

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-48  Score=412.92  Aligned_cols=399  Identities=16%  Similarity=0.145  Sum_probs=302.7

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~  121 (498)
                      +...++|+++++.+|+++|+++.   +..++..+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||
T Consensus        53 n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~  129 (629)
T PRK10524         53 NLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLAC  129 (629)
T ss_pred             eHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            44577888888889999999875   433344578999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh---------HHhhcccccccCCccEEEEecCCcHHHHHHHhh
Q 010878          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (498)
Q Consensus       122 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  192 (498)
                      +++|++++|+++.++.+++..++++++++++|+++...         ..+.+...........++.++......    ..
T Consensus       130 ~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~  205 (629)
T PRK10524        130 ARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----AR  205 (629)
T ss_pred             HHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----Cc
Confidence            99999999999999999999999999999999976421         122221111112344566554321100    00


Q ss_pred             cCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhh-hhhhhccccCCCCCCcEEEE
Q 010878          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLS  271 (498)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~  271 (498)
                      .......++++.........+.....++++++++|||||||.||+|+++|.+++..... +...+     ++.++|++++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~  280 (629)
T PRK10524        206 VAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETFFC  280 (629)
T ss_pred             ccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence            00112345555543211112222345789999999999999999999999987654433 22233     6788999999


Q ss_pred             ecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHH
Q 010878          272 FLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (498)
Q Consensus       272 ~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (498)
                      ..|+.|..+... ++.+++.|+++++.++     ++..+++.++++++|+++++|++++.+.+....             
T Consensus       281 ~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------------  347 (629)
T PRK10524        281 ASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA-------------  347 (629)
T ss_pred             cCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc-------------
Confidence            999999888765 6778999999998763     688999999999999999999999887542100             


Q ss_pred             HHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCccccc
Q 010878          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT  425 (498)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~  425 (498)
                                            .....++        ++||.+++||+++++++.+++.+.+++++++.||+||++..+.
T Consensus       348 ----------------------~~~~~~l--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~  397 (629)
T PRK10524        348 ----------------------LLRKHDL--------SSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPIL  397 (629)
T ss_pred             ----------------------cccccCh--------hheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhh
Confidence                                  0111222        3899999999999999999999999999999999999985333


Q ss_pred             ccCCC---CccccCccccCcCCceEEeeecC-CCCCCCCCCCCCCeEEEecC---CCcccccCCchhhhhhc----cCCc
Q 010878          426 VCFPD---EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----IDGW  494 (498)
Q Consensus       426 ~~~~~---~~~~~~s~G~~~~g~~i~ivd~~-~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~f----~dGw  494 (498)
                      .....   .....+++|+|++|++++|+| + ++..  ++.|+.|||+|+||   +++.|||++++.+.+.+    .+||
T Consensus       398 ~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~~--~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (629)
T PRK10524        398 AIARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGEP--CGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQV  474 (629)
T ss_pred             cCCCCcccCcCCCCCcccCcCCceEEEEe-CCCCCC--CCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcE
Confidence            22221   123457899999999999999 6 6654  44568999999998   57899999998776544    4689


Q ss_pred             cccC
Q 010878          495 FHTG  498 (498)
Q Consensus       495 ~~TG  498 (498)
                      |+||
T Consensus       475 ~~TG  478 (629)
T PRK10524        475 YSTF  478 (629)
T ss_pred             EEcC
Confidence            9998

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-48  Score=404.64  Aligned_cols=391  Identities=22%  Similarity=0.269  Sum_probs=301.2

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      +...++.++|++.++++|+++|+++.   ++.    ..+||.||.++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~   85 (534)
T PRK05852         13 DFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVAL   85 (534)
T ss_pred             hhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHH
Confidence            45678999999999999999999874   332    47999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      +||+++|++++|+++.++.+++.++++.++++++|++............   ......+.+.......      ......
T Consensus        86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~  156 (534)
T PRK05852         86 LAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGPS------GGTLSV  156 (534)
T ss_pred             HHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeeccccccc------cccccc
Confidence            9999999999999999999999999999999999998753322111100   0111112221111000      000000


Q ss_pred             eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                      .+....  .............++.++++|||||||.||+|.++|.++...+......+     .+..+|++++.+|++|.
T Consensus       157 ~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~  229 (534)
T PRK05852        157 HLDAAT--EPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYHG  229 (534)
T ss_pred             cccccc--CCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcchh
Confidence            011100  00000111122346789999999999999999999999999888877666     78899999999999999


Q ss_pred             HHHHH-HHHHHHcCcEEEEeCC---ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          279 LDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       279 ~g~~~-~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      +++.. ++.+++.|+++++...   ++..+++.++++++|.++++|.+++.+.+......                    
T Consensus       230 ~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------  289 (534)
T PRK05852        230 HGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP--------------------  289 (534)
T ss_pred             HHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc--------------------
Confidence            99987 6677899999887542   78899999999999999999999999876321100                    


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC---
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---  431 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~---  431 (498)
                                     ...+        .+++|.++++|+++++++.+++.+.++.++++.||+||++..++......   
T Consensus       290 ---------------~~~~--------~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~  346 (534)
T PRK05852        290 ---------------SGRK--------PAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQ  346 (534)
T ss_pred             ---------------cccc--------CCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCcccccc
Confidence                           0000        14899999999999999999999999999999999999988766543211   


Q ss_pred             -ccccCccccC--cCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          432 -MCMVGTAGPV--SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       432 -~~~~~s~G~~--~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                       .....++|.+  .+|++++|+| ++++.++  .|+.|||+|+|+.++.||+++++.+.+.|.+|||+||
T Consensus       347 ~~~~~~~~g~~g~~~g~~~~i~d-~~g~~~~--~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TG  413 (534)
T PRK05852        347 TENPVVSTGLVGRSTGAQIRIVG-SDGLPLP--AGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTG  413 (534)
T ss_pred             ccCcccccccCCCCCCCeEEEEC-CCCCCCC--CCCceEEEEecCcccchhcCCcccchhhhcCCCcccC
Confidence             1111334444  7999999999 7776554  4589999999999999999999999999999999998

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=7.7e-50  Score=365.13  Aligned_cols=384  Identities=19%  Similarity=0.190  Sum_probs=322.4

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..++.++|..+++++||++|+++.    +     +.+||++|.++++++|+.|++.|+++||+|.+.+||..++++++||
T Consensus        27 d~~l~d~L~~~A~~~pdriAv~d~----~-----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA   97 (542)
T COG1021          27 DRTLTDILTDHAARYPDRIAVIDG----E-----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA   97 (542)
T ss_pred             CCcHHHHHHHHHhhcCCceEEecC----c-----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence            378999999999999999999863    3     4799999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh----HHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (498)
                      ++++|+.++.--|.....+|.+..+.+.++.+|++....    ..+........+.++.+++.++...            
T Consensus        98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~------------  165 (542)
T COG1021          98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEH------------  165 (542)
T ss_pred             HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCC------------
Confidence            999999999888988999999999999999999886432    2222333345578889988865532            


Q ss_pred             eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010878          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                      ....+..+-.......+..+.++++++|+..+.||||.||.+..+|.....++..-.+.+     +++..++++|.+|..
T Consensus       166 ~~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~A  240 (542)
T COG1021         166 PSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPAA  240 (542)
T ss_pred             cchhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEecccc
Confidence            112222222222334445667889999999999999999999999999999999988888     999999999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010878          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (498)
Q Consensus       277 h~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (498)
                      |-+.+..  .+..++.|+++|+.+. +|+.-+.+|+++++|+...+|.+...+++..+                      
T Consensus       241 HNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e----------------------  298 (542)
T COG1021         241 HNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAE----------------------  298 (542)
T ss_pred             cCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhh----------------------
Confidence            9999987  7788999999999887 99999999999999999999999998876432                      


Q ss_pred             HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcc
Q 010878          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~  433 (498)
                                     +...+++        |||.+-+||+.+++++.+++...+||.+.+.|||.|.-...+.-.+....
T Consensus       299 ---------------~~~~~Ls--------SLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~  355 (542)
T COG1021         299 ---------------WERADLS--------SLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEI  355 (542)
T ss_pred             ---------------cccCCch--------heeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHh
Confidence                           2333444        99999999999999999999999999999999999954332222222223


Q ss_pred             ccCccccCc-CCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      ..-+-|+|+ |.=|++|+| ++|+.  +++||.|+|..|||-.++|||+.|+.+++.| .||+|+||
T Consensus       356 i~~TQGrPlsP~DEvrvvD-~dg~p--v~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsG  419 (542)
T COG1021         356 IIHTQGRPLSPDDEVRVVD-ADGNP--VAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSG  419 (542)
T ss_pred             eeecCCCcCCCcceeEEec-CCCCC--CCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecC
Confidence            335789998 889999999 88774  4555999999999999999999999999999 99999998

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.5e-48  Score=401.85  Aligned_cols=393  Identities=20%  Similarity=0.291  Sum_probs=310.0

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...++.++|+.+++.+|++.++.+.   .  ++.++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus         8 ~~~~~~~~l~~~~~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~l   82 (539)
T PRK07008          8 MPLLISSLIAHAARHAGDTEIVSRR---V--EGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYY   82 (539)
T ss_pred             CCCCHHHHHHHHHhhCCCceEEEee---c--cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence            3467899999999999998887653   1  1224689999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++|+++.++.+++..+++.+++++++++.+....+.+... .....+.++.+.+.....     .......+
T Consensus        83 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~  156 (539)
T PRK07008         83 GVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAP-QCPNVKGWVAMTDAAHLP-----AGSTPLLC  156 (539)
T ss_pred             HHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHh-hCCCceEEEEEccCCccc-----cCCccccc
Confidence            999999999999999999999999999999999999877655433322 234455555554332100     01122455


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhh--hhhhhccccCCCCCCcEEEEecChHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG--VDLFLDQFEDKMTVDDVYLSFLPLAH  277 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~--~~~~~~~~~~~~~~~d~~l~~~pl~h  277 (498)
                      ++++...... ........++++++++|||||||.||+|+++|.+++.....  +...+     ++..+|++++.+|++|
T Consensus       157 ~~~l~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h  230 (539)
T PRK07008        157 YETLVGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFH  230 (539)
T ss_pred             HHHHhcccCC-CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHH
Confidence            6666543221 11223446788999999999999999999999998754322  22233     6788999999999999


Q ss_pred             HHHHHHHHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010878          278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (498)
Q Consensus       278 ~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (498)
                      ..++...+.++..|+++++.+.  ++..+.+.++++++|++.++|.++..+++.....                      
T Consensus       231 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~----------------------  288 (539)
T PRK07008        231 VNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA----------------------  288 (539)
T ss_pred             hhhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc----------------------
Confidence            9888777788999999998754  8999999999999999999999999887532211                      


Q ss_pred             HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC----
Q 010878          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----  431 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~----  431 (498)
                                     ..++        ++||.++++|+++++++.+++.+.+++++++.||+||++..++......    
T Consensus       289 ---------------~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~  345 (539)
T PRK07008        289 ---------------GLRF--------STLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQ  345 (539)
T ss_pred             ---------------CCCc--------ccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceeccccccccc
Confidence                           0112        3899999999999999999999889999999999999987655432110    


Q ss_pred             ------ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          432 ------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       432 ------~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                            .....++|+|+||++++|+| +++..++.+.++.|||+++|+.++.||+++++   ..+.+|||+||
T Consensus       346 ~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TG  414 (539)
T PRK07008        346 LPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTG  414 (539)
T ss_pred             CCchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccC
Confidence                  11236799999999999999 78877776655789999999999999999883   34668999998

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.3e-48  Score=398.13  Aligned_cols=364  Identities=18%  Similarity=0.176  Sum_probs=299.1

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~  121 (498)
                      +++.+.|.++++++||++|+++.    +     .++||.||.++++++|+.|.+.|. +|++|+|+++|+++++++++||
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~   70 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN----D-----RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA   70 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC----C-----cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence            36789999999999999999864    3     489999999999999999999885 8999999999999999999999


Q ss_pred             HHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHH
Q 010878          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (498)
Q Consensus       122 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  201 (498)
                      +++|++++|+++.++.+++.++++.+++++++++......+...       ...++.+++                  +.
T Consensus        71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~------------------~~  125 (487)
T PRK07638         71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE-------EGRVIEIDE------------------WK  125 (487)
T ss_pred             HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc-------cceEEEehh------------------hh
Confidence            99999999999999999999999999999999998654433210       112222221                  11


Q ss_pred             HHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHH
Q 010878          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (498)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~  281 (498)
                      +..... ...........+++++++|||||||.||+|+++|.+++.++......+     ++.++|+++...|++|..++
T Consensus       126 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l  199 (487)
T PRK07638        126 RMIEKY-LPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFL  199 (487)
T ss_pred             hhhhhc-cccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHH
Confidence            111111 001111122356789999999999999999999999999888776655     78899999999999999888


Q ss_pred             HHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccc
Q 010878          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (498)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (498)
                      ..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+.+...                             
T Consensus       200 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------------  250 (487)
T PRK07638        200 YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR-----------------------------  250 (487)
T ss_pred             HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC-----------------------------
Confidence            778889999999998876 99999999999999999999999998865200                             


Q ss_pred             CCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCCccccCccc
Q 010878          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  439 (498)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G  439 (498)
                                          ...+.+.++++|++++.++.+++.+.+ ++++++.||+||++.++............++|
T Consensus       251 --------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  310 (487)
T PRK07638        251 --------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVG  310 (487)
T ss_pred             --------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCC
Confidence                                002456677899999999999999988 68999999999999876665544344557999


Q ss_pred             cCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       440 ~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      +|++|++++|+| +++..++  .|+.|||+|+|+.++.||+++++.+.+.+.+|||+||
T Consensus       311 ~~~~~~~~~i~d-~~g~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG  366 (487)
T PRK07638        311 RPFHNVQVRICN-EAGEEVQ--KGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVR  366 (487)
T ss_pred             cccCCcEEEEEC-CCCCCCC--CCCCeEEEEecccceeeecCCHHHHhhhccCCcEecC
Confidence            999999999999 7776544  5589999999999999999999988877789999998

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.3e-48  Score=403.92  Aligned_cols=384  Identities=25%  Similarity=0.274  Sum_probs=315.9

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ..+|+.+.+..+++.+|+++|+.+.   +      +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++
T Consensus        15 ~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~   85 (542)
T PRK07786         15 RRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL   85 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4588999999999999999999864   3      489999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++|+++..+.+++..+++.+++++++++......+... ....+..+.++..++...          ....+
T Consensus        86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~  154 (542)
T PRK07786         86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAV-RDIVPLLSTVVVAGGSSD----------DSVLG  154 (542)
T ss_pred             HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHh-hhccCccceEEEecCCCc----------ccccC
Confidence            9999999999999999999999999999999999998766544222 222344555666543211          01245


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCC-CCCcEEEEecChHHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM-TVDDVYLSFLPLAHI  278 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~  278 (498)
                      ++++...... .........+++++++|||||||.||+|.++|.++...+......+     ++ ..++++++..|++|.
T Consensus       155 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~  228 (542)
T PRK07786        155 YEDLLAEAGP-AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFHI  228 (542)
T ss_pred             HHHHhhccCC-CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHHH
Confidence            6666543322 1122334567899999999999999999999999998887765554     44 578999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEeC---CChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010878          279 LDRVIEEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (498)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (498)
                      +|+..++.++..|+++++.+   .++..+++.++++++|.++++|.++..+++......                     
T Consensus       229 ~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~---------------------  287 (542)
T PRK07786        229 AGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP---------------------  287 (542)
T ss_pred             HHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc---------------------
Confidence            99988888999999999865   289999999999999999999999999865321100                     


Q ss_pred             HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC-cc
Q 010878          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MC  433 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~-~~  433 (498)
                                    .           ..++|.+++||+++++++.+++++.+ +.++++.||+||++.+......+. ..
T Consensus       288 --------------~-----------~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~  342 (542)
T PRK07786        288 --------------R-----------DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIR  342 (542)
T ss_pred             --------------c-----------CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccc
Confidence                          0           01689999999999999999999988 789999999999987655443322 23


Q ss_pred             ccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ..+++|+|++++.++|+| +++..++  .|+.|||+++|+.++.||+++++.+...|.+|||+||
T Consensus       343 ~~~~~G~~~~~~~~~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TG  404 (542)
T PRK07786        343 KLGSVGKVIPTVAARVVD-ENMNDVP--VGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSG  404 (542)
T ss_pred             cCCCccccCCCceEEEEC-CCCCCCc--CCCceEEEEEChhhhhhhcCCHHHHHHHhhCCccccc
Confidence            447899999999999999 7776554  4589999999999999999999999999999999998

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.1e-48  Score=404.83  Aligned_cols=398  Identities=22%  Similarity=0.292  Sum_probs=303.2

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      .++.+.|.+.++++|+++|+++.    +     +.+||.||.++++++|+.|.+. |+++||+|+++++|+++++++++|
T Consensus        24 ~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la   94 (562)
T PRK12492         24 KSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFG   94 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            58999999999999999998753    3     4899999999999999999985 999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEec--CCcHHHHH----------
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT--SLTAEQKE----------  188 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~--~~~~~~~~----------  188 (498)
                      |+++|++++|+++..+.+++.+++++++++++++++.....+......  .....++...  +.......          
T Consensus        95 ~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (562)
T PRK12492         95 ALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVDKV  172 (562)
T ss_pred             HHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhcccccccc
Confidence            999999999999999999999999999999999987654433222111  1111111110  00000000          


Q ss_pred             ---HHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccC----
Q 010878          189 ---MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED----  261 (498)
Q Consensus       189 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~----  261 (498)
                         ..........+|+++............+...+++++++|||||||.||+|+++|.++...+......+.....    
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~  252 (562)
T PRK12492        173 KKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQP  252 (562)
T ss_pred             cccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccc
Confidence               0000001224566655433222222234567899999999999999999999999998877665443311000    


Q ss_pred             CCCC-CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhh
Q 010878          262 KMTV-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (498)
Q Consensus       262 ~~~~-~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~  337 (498)
                      .... ++++++.+|++|.+++.. ++..+..|.+.++...  ++..+++.++++++|+++++|.++..+++...      
T Consensus       253 ~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------  326 (562)
T PRK12492        253 LMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG------  326 (562)
T ss_pred             cccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC------
Confidence            0222 467889999999999876 5566788887776543  88999999999999999999999988765210      


Q ss_pred             chHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeecc
Q 010878          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL  417 (498)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~  417 (498)
                                                     ....++        +++|.+++||+++++++.+++++.+++++++.||+
T Consensus       327 -------------------------------~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~  367 (562)
T PRK12492        327 -------------------------------FKDLDF--------SALKLTNSGGTALVKATAERWEQLTGCTIVEGYGL  367 (562)
T ss_pred             -------------------------------cccccc--------cceeEEEeccccCCHHHHHHHHHHhCCceeeccCc
Confidence                                           111122        38999999999999999999999889999999999


Q ss_pred             ccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccc
Q 010878          418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH  496 (498)
Q Consensus       418 tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~  496 (498)
                      ||++.+++..........+++|+|+++++++|+| +++..+  +.|+.|||+|+|+.++.||+++++.+.+.| .+|||+
T Consensus       368 tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~--~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~  444 (562)
T PRK12492        368 TETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNEL--PLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFK  444 (562)
T ss_pred             cccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCCC--CCCCceEEEEeCCccccccccCchhhhhcccCCCcee
Confidence            9998877665544333447899999999999999 776654  455899999999999999999999999988 689999


Q ss_pred             cC
Q 010878          497 TG  498 (498)
Q Consensus       497 TG  498 (498)
                      ||
T Consensus       445 TG  446 (562)
T PRK12492        445 TG  446 (562)
T ss_pred             cC
Confidence            98

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9e-48  Score=399.59  Aligned_cols=388  Identities=24%  Similarity=0.295  Sum_probs=315.0

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...++.++|...++.+|+++|+++.   +      ..+||.||.+++.++|..|.+.|+++|++|+++++|+++++++++
T Consensus         9 ~~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~   79 (523)
T PRK08316          9 RRQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL   79 (523)
T ss_pred             cCCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3578999999999999999999875   3      489999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++|+++..+.+++..+++.+++++++++......+.+......  ...+........      .........
T Consensus        80 a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~  151 (523)
T PRK08316         80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--VDTLILSLVLGG------REAPGGWLD  151 (523)
T ss_pred             HHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--ccceeeeecccc------cccccchhh
Confidence            999999999999999999999999999999999999887766544332211  111111100000      000112334


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  279 (498)
                      ++++...... .........+++++++|||||||.||+|.++|.+++.........+     ++.++|++++.+|++|..
T Consensus       152 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~  225 (523)
T PRK08316        152 FADWAEAGSV-AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCA  225 (523)
T ss_pred             HHHHHhcCCC-ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhh
Confidence            4544433211 1123345678999999999999999999999999998887766665     789999999999999999


Q ss_pred             HHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 010878          280 DRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (498)
Q Consensus       280 g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (498)
                      ++.. ++.++..|+++++.+. ++..+++.++++++|+++++|.++..+.+...                          
T Consensus       226 g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------  279 (523)
T PRK08316        226 QLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPD--------------------------  279 (523)
T ss_pred             hHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc--------------------------
Confidence            9876 5567899999999865 99999999999999999999999988765211                          


Q ss_pred             cccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC-cccc
Q 010878          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMV  435 (498)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~-~~~~  435 (498)
                                 ....++        +++|.+++||++++.++.+.+++.+ ++++++.||+||++.++....... ....
T Consensus       280 -----------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  340 (523)
T PRK08316        280 -----------FDTRDL--------SSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRP  340 (523)
T ss_pred             -----------cccCCc--------ccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCcccccccc
Confidence                       111112        3899999999999999999999988 789999999999998776654432 2344


Q ss_pred             CccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       436 ~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      +++|+|+++++++|+| +++..++.  |+.|||+++|++++.||+++++.+.+.|.+|||+||
T Consensus       341 ~~~G~~~~~~~~~i~~-~~~~~~~~--g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TG  400 (523)
T PRK08316        341 GSAGRPVLNVETRVVD-DDGNDVAP--GEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSG  400 (523)
T ss_pred             CCcccCCCCcEEEEEc-CCCCCCCC--CCcceEEEECCchhhhhcCCHHHHHHHhhCCCeecc
Confidence            7899999999999999 77765554  589999999999999999999999999999999998

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.9e-48  Score=401.71  Aligned_cols=385  Identities=25%  Similarity=0.325  Sum_probs=306.8

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...|+.++|...++++|+++|+++.    +     +++||.||.+++.++|..|.+.|+++|++|+++++|+++++++++
T Consensus         5 ~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l   75 (528)
T PRK07470          5 RVMNLAHFLRQAARRFPDRIALVWG----D-----RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF   75 (528)
T ss_pred             cCCCHHHHHHHHHHHCCCceEEEEC----C-----ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3567999999999999999999864    3     489999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++++++..+.+++.++++.++++.++++......+.... ........++.++....            ..+
T Consensus        76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~~  142 (528)
T PRK07470         76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVR-AASPDLTHVVAIGGARA------------GLD  142 (528)
T ss_pred             HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHH-hhCCcCceEEEeCCCcc------------ccc
Confidence            99999999999999999999999999999999999987655443221 12233445555543211            234


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  279 (498)
                      ++++...............++++++++|||||||.||+|.++|.++...+......+   ..+....|+++..+|++|.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~  219 (528)
T PRK07470        143 YEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHGA  219 (528)
T ss_pred             HHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhHH
Confidence            555554322222223345678999999999999999999999999876554432211   11457789999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEeCC---ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010878          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (498)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (498)
                      ++..++ .++.|++.++.+.   ++..+++.++++++|++.++|.+++.+.+...                         
T Consensus       220 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  273 (528)
T PRK07470        220 GIHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPA-------------------------  273 (528)
T ss_pred             HHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcC-------------------------
Confidence            987654 5677777766642   89999999999999999999999998865211                         


Q ss_pred             hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCC------
Q 010878          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD------  430 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~------  430 (498)
                                  .+..++        +++|.+++||+++++++.+++.+.+|.++++.||+||+++.++.....      
T Consensus       274 ------------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~  333 (528)
T PRK07470        274 ------------VDRYDH--------SSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAED  333 (528)
T ss_pred             ------------cCCCCC--------cceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccc
Confidence                        000111        389999999999999999999888899999999999998776654321      


Q ss_pred             -CccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          431 -EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       431 -~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                       .....+++|+|++|++++|+| +++..+  +.|+.|||+++|+.++.||+++++.+...|.+|||+||
T Consensus       334 ~~~~~~~~~G~~~~g~~~~i~d-~~~~~~--~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TG  399 (528)
T PRK07470        334 GPDARIGTCGFERTGMEVQIQD-DEGREL--PPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTG  399 (528)
T ss_pred             cccceeeccCcccCCcEEEEEC-CCCCCC--CCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecc
Confidence             112347899999999999999 776654  45589999999999999999999999988899999998

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.5e-48  Score=407.99  Aligned_cols=376  Identities=17%  Similarity=0.194  Sum_probs=286.2

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCC---CCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~---~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~  116 (498)
                      ...|+.++++++++++|+++|+++.   +.   .++.++.+||.||.++++++|++|.+. +++||+|+++++|++++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~  107 (612)
T PRK12476         32 PGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVA  107 (612)
T ss_pred             ccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHH
Confidence            4478999999999999999999875   32   123456899999999999999999986 9999999999999999999


Q ss_pred             HHHHHHHcCCeEeec-CCCCC--hhHHHHHHhhcCccEEEEcCchhHHhhccccccc-CCccEEEEecCCcHHHHHHHhh
Q 010878          117 AMEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQ  192 (498)
Q Consensus       117 ~~lA~~~~G~~~~~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~~~~~~~  192 (498)
                      +++||+++|++++|+ ++.++  .+++.+++++++++++|++......+.+...... .....++.+++...        
T Consensus       108 ~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------  179 (612)
T PRK12476        108 GFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD--------  179 (612)
T ss_pred             HHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc--------
Confidence            999999999999999 57766  7899999999999999998876655433221110 01123444432110        


Q ss_pred             cCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCC-CCCCcEEEE
Q 010878          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLS  271 (498)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~  271 (498)
                                   .. ..........++++++++|||||||.||||+++|+++++++......+     . +.+++++++
T Consensus       180 -------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~  240 (612)
T PRK12476        180 -------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGVS  240 (612)
T ss_pred             -------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEEE
Confidence                         00 001111234568999999999999999999999999988776655544     5 678899999


Q ss_pred             ecChHHHHHHHHHHHHHHcCcEEEEeCC-----ChHhHHHHHh--hhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHH
Q 010878          272 FLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (498)
Q Consensus       272 ~~pl~h~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~--~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (498)
                      ++|++|.+|+...+.+++.|++.+++..     ++..+++.++  ++++|.++.+|.++..++......           
T Consensus       241 ~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~-----------  309 (612)
T PRK12476        241 WLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLP-----------  309 (612)
T ss_pred             eCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcCh-----------
Confidence            9999999999876666556666555432     7889999994  589999999999988776421000           


Q ss_pred             HHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc---CC---ceEeeeccc
Q 010878          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLT  418 (498)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---g~---~l~~~YG~t  418 (498)
                                            .....++++        ++| +++||+++++++.+++.+.|   |+   .+++.||+|
T Consensus       310 ----------------------~~~~~~~l~--------~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~T  358 (612)
T PRK12476        310 ----------------------AEGDDIDLS--------NVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIA  358 (612)
T ss_pred             ----------------------hhhcCcchh--------Hhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchh
Confidence                                  000112232        789 99999999999999999887   54   489999999


Q ss_pred             cCcccccccCCCCc--------------------------cccCccccCcCCceEEeeecCC-CCCCCCCCCCCCeEEEe
Q 010878          419 ETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEVCVR  471 (498)
Q Consensus       419 E~~~~~~~~~~~~~--------------------------~~~~s~G~~~~g~~i~ivd~~~-~~~~~~~~~~~Gei~v~  471 (498)
                      |++..++.......                          ...+++|+|++|++++|+| ++ +..++  .|+.|||||+
T Consensus       359 E~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g~~~~--~g~~GEl~v~  435 (612)
T PRK12476        359 EATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTGAELP--DGEVGEIWLH  435 (612)
T ss_pred             hhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCCcCCC--CCCEEEEEEc
Confidence            98765543322100                          0125899999999999999 66 66554  4589999999


Q ss_pred             cCCCcccccCCchhhhhhcc
Q 010878          472 GKTLFSGYYKNPDLTRESII  491 (498)
Q Consensus       472 g~~v~~gY~~~~~~~~~~f~  491 (498)
                      |++++.|||++++.|++.|.
T Consensus       436 g~~v~~GY~~~~~~t~~~f~  455 (612)
T PRK12476        436 GDNIGRGYWGRPEETERTFG  455 (612)
T ss_pred             CCcccccccCChHHHHHHHh
Confidence            99999999999999998883

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=3.5e-48  Score=415.47  Aligned_cols=377  Identities=20%  Similarity=0.290  Sum_probs=291.1

Q ss_pred             CcccHHHHHHHHHHcCCC-CCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd-~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ...|+.+.|.+.++++|+ ++|+.+.   +.     +.+||+||.++++++|++|.+. +++||+|+++++|++++++++
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~  272 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIEDV---NF-----TPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI  272 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEcC---CC-----CcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence            457899999999999998 5777532   11     4799999999999999999987 599999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhc-ccccccCCccEEEEecCCcHHHHHHHhhcCcce
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~  197 (498)
                      |||+++|++++|+++.++.+++.+++++++++++|++.+..+.... .......... ++.+++....            
T Consensus       273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~------------  339 (718)
T PRK08043        273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVR-WVYLEDLKDD------------  339 (718)
T ss_pred             HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhcccc-EEEhhhhhhh------------
Confidence            9999999999999999999999999999999999998776543110 0111111122 2222221100            


Q ss_pred             eeHHH--HH-hccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecC
Q 010878          198 YSWDE--FL-HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (498)
Q Consensus       198 ~~~~~--~~-~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (498)
                      ..+.+  .. ...........+..++++++++|||||||.||+|+++|.++++.+......+     +++.+|++++.+|
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P  414 (718)
T PRK08043        340 VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALP  414 (718)
T ss_pred             cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCc
Confidence            00111  00 0000001111234578999999999999999999999999999887776655     7889999999999


Q ss_pred             hHHHHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 010878          275 LAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (498)
Q Consensus       275 l~h~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (498)
                      ++|.+++.. ++.++..|+++++.+.  ++..+.+.++++++|+++++|+++..+.+..                     
T Consensus       415 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~---------------------  473 (718)
T PRK08043        415 LFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA---------------------  473 (718)
T ss_pred             chhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc---------------------
Confidence            999999876 6788999999998864  6778889999999999999999987654310                     


Q ss_pred             HHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC
Q 010878          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~  431 (498)
                                        +..++        ++||.+++||+++++++.+.+++.+|+++++.||+||++++++...+..
T Consensus       474 ------------------~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~  527 (718)
T PRK08043        474 ------------------NPYDF--------ARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA  527 (718)
T ss_pred             ------------------Ccccc--------cceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc
Confidence                              00112        3899999999999999999999999999999999999987766554332


Q ss_pred             ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccC--Cchh-------hhhhc-cCCccccC
Q 010878          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDL-------TRESI-IDGWFHTG  498 (498)
Q Consensus       432 ~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~--~~~~-------~~~~f-~dGw~~TG  498 (498)
                       ...+++|+|+||++++|+| +++.      ++.|||+++|++++.|||+  +++.       +.+.+ .+|||+||
T Consensus       528 -~~~~svG~p~pg~~~~i~d-~~~~------~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TG  596 (718)
T PRK08043        528 -AKPGTVGRILPGMDARLLS-VPGI------EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTG  596 (718)
T ss_pred             -cCCCCCCCcCCCCeeEEec-CCCC------CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecC
Confidence             3458999999999999998 5432      3569999999999999998  4442       22223 68999998

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.3e-47  Score=401.42  Aligned_cols=390  Identities=28%  Similarity=0.373  Sum_probs=310.6

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ....++.++|.+.++.+|+++|+++.   ++.    +.+||.||.++++++|..|.+.|+++|++|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~   85 (559)
T PRK08315         13 LLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQ   85 (559)
T ss_pred             hhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            44568999999999999999999875   432    57999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH-----Hhhccccc------------ccCCccEEEEecC
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPDCR------------SAQRLRVMVCFTS  181 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~------------~~~~~~~vi~~~~  181 (498)
                      |||+++|++++|+++..+.+++..+++.+++++++++.....     .+.+...+            ..+..+.++.++.
T Consensus        86 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (559)
T PRK08315         86 FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD  165 (559)
T ss_pred             HHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc
Confidence            999999999999999999999999999999999999875321     11111100            0122344444443


Q ss_pred             CcHHHHHHHhhcCcceeeHHHHHhcccc---c--cccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhh
Q 010878          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKV---N--EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL  256 (498)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~  256 (498)
                      ...          .....++++......   .  .........+++++++|||||||.||+|.++|.+++.++......+
T Consensus       166 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~  235 (559)
T PRK08315        166 EKH----------PGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM  235 (559)
T ss_pred             cCC----------cccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc
Confidence            211          112345554432210   0  0112234568899999999999999999999999998888777666


Q ss_pred             ccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHH
Q 010878          257 DQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA  333 (498)
Q Consensus       257 ~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~  333 (498)
                           ++..+|+++..+|++|.+|+.. ++.++..|+++++...  ++..+++.++++++|+++++|.++..++....  
T Consensus       236 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~--  308 (559)
T PRK08315        236 -----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPD--  308 (559)
T ss_pred             -----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcc--
Confidence                 7889999999999999999876 6778999999986543  89999999999999999999999987764211  


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceE
Q 010878          334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLV  412 (498)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~l~  412 (498)
                                                         .+..++        ++||.+++||++++.++.+.+.+.++. +++
T Consensus       309 -----------------------------------~~~~~~--------~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~  345 (559)
T PRK08315        309 -----------------------------------FARFDL--------SSLRTGIMAGSPCPIEVMKRVIDKMHMSEVT  345 (559)
T ss_pred             -----------------------------------cCCCCc--------hhhheeEecCCCCCHHHHHHHHHHcCCccee
Confidence                                               011112        389999999999999999999988876 499


Q ss_pred             eeeccccCcccccccCCCC--ccccCccccCcCCceEEeeecCC-CCCCCCCCCCCCeEEEecCCCcccccCCchhhhhh
Q 010878          413 QGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES  489 (498)
Q Consensus       413 ~~YG~tE~~~~~~~~~~~~--~~~~~s~G~~~~g~~i~ivd~~~-~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~  489 (498)
                      +.||+||++.+++......  .....++|+|++|++++|+| ++ ++.++  .|+.|||+|+|++++.||+++++.+...
T Consensus       346 ~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~--~g~~GEl~v~g~~~~~gy~~~~~~~~~~  422 (559)
T PRK08315        346 IAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETGETVP--RGEQGELCTRGYSVMKGYWNDPEKTAEA  422 (559)
T ss_pred             EEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccCCcCC--CCCceEEEEECchhhhhhcCChhHHhhc
Confidence            9999999987766554332  23457899999999999999 55 65444  5589999999999999999999999888


Q ss_pred             c-cCCccccC
Q 010878          490 I-IDGWFHTG  498 (498)
Q Consensus       490 f-~dGw~~TG  498 (498)
                      | .+|||+||
T Consensus       423 ~~~~~~~~TG  432 (559)
T PRK08315        423 IDADGWMHTG  432 (559)
T ss_pred             CCCCCCEEcc
Confidence            8 89999998

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-47  Score=399.45  Aligned_cols=401  Identities=21%  Similarity=0.285  Sum_probs=307.0

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ....++.++|...++++|+++|+++.   +      ..+||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        20 ~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~   90 (557)
T PRK07059         20 SQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAI   90 (557)
T ss_pred             CCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            44578999999999999999999875   3      48999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHH-HH---------
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ-KE---------  188 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~---------  188 (498)
                      +||+++|++++|+++..+.+++.++++.++++++|+++.....+.+....  ...+.++......... ..         
T Consensus        91 la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (557)
T PRK07059         91 AAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVRR  168 (557)
T ss_pred             HHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEeccccccccccccccccccc
Confidence            99999999999999999999999999999999999988765444332211  1222232221100000 00         


Q ss_pred             ----HHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccC-C-
Q 010878          189 ----MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED-K-  262 (498)
Q Consensus       189 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~-~-  262 (498)
                          ...........++++...............++++++++|||||||.||+|.++|.+++.++......+..... . 
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~  248 (557)
T PRK07059        169 VKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKP  248 (557)
T ss_pred             ccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccC
Confidence                0000011123455554433222222334567899999999999999999999999998776544322211000 1 


Q ss_pred             CCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhch
Q 010878          263 MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (498)
Q Consensus       263 ~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~  339 (498)
                      ....+.+++.+|++|.+++.. .+.++..|++.++.+.  ++..+++.++++++|.+.++|.++..+.+...        
T Consensus       249 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~--------  320 (557)
T PRK07059        249 RPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD--------  320 (557)
T ss_pred             CCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC--------
Confidence            123457888999999998765 5667888888777654  88999999999999999999999998865210        


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeecccc
Q 010878          340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE  419 (498)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE  419 (498)
                                                   ....++        +++|.++.||+++++.+.+++.+.+|+++++.||+||
T Consensus       321 -----------------------------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE  363 (557)
T PRK07059        321 -----------------------------FDKLDF--------SKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSE  363 (557)
T ss_pred             -----------------------------cCcCCc--------hhheEEEeccccCCHHHHHHHHHHhCCCeeecccccc
Confidence                                         111122        2789999999999999999999989999999999999


Q ss_pred             CcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       420 ~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      ++.+++.........++++|+|++|++++|+| +++..+  +.|+.|||+++|+.++.||+++++.+.+.| .+|||+||
T Consensus       364 ~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~--~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG  440 (557)
T PRK07059        364 TSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDL--PLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTG  440 (557)
T ss_pred             ccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCC--CCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecC
Confidence            99877665544334457999999999999999 776544  455899999999999999999999998888 78999998

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.6e-47  Score=400.86  Aligned_cols=391  Identities=20%  Similarity=0.260  Sum_probs=292.4

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..|+.++|.++++.+|+++|+++.    +     .++||+||.++++++|+.|.++|+++||+|+|+++|++++++++||
T Consensus        13 ~~~~~~~l~~~~~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la   83 (579)
T PLN03102         13 PLTPITFLKRASECYPNRTSIIYG----K-----TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFA   83 (579)
T ss_pred             cccHHHHHHHHHHhCCCCeEEEEC----C-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            357899999999999999999864    3     4899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccccccc----CCccEEEEecCCcHHHHHHHhhcCcc
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA----QRLRVMVCFTSLTAEQKEMAVQTGIK  196 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (498)
                      |+++|++++|+++..+.+++.++++.++++++|++.+....+.+......    .....++.++......     .....
T Consensus        84 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  158 (579)
T PLN03102         84 VPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK-----RPSSE  158 (579)
T ss_pred             HHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccccc-----CCccc
Confidence            99999999999999999999999999999999998876655433221110    0112344443221100     00001


Q ss_pred             eeeHHHHHhcccccccc----CCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEe
Q 010878          197 PYSWDEFLHLGKVNEME----ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (498)
Q Consensus       197 ~~~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (498)
                      ..+++++..........    .....++++++++|||||||.||+|+++|.++...........     .+...+++++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~  233 (579)
T PLN03102        159 ELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLWT  233 (579)
T ss_pred             ccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEec
Confidence            23455555432211111    1123568999999999999999999999999765544332222     56677899999


Q ss_pred             cChHHHHHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 010878          273 LPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (498)
Q Consensus       273 ~pl~h~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (498)
                      +|++|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|.++..+.+......                 
T Consensus       234 ~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------  296 (579)
T PLN03102        234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL-----------------  296 (579)
T ss_pred             CChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc-----------------
Confidence            999999998877778888988887765 88899999999999999999999999875321100                 


Q ss_pred             HHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC
Q 010878          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (498)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~  431 (498)
                                          ...        ++++.+++||+++++.+.++++. +|+++++.||+||+++.++......
T Consensus       297 --------------------~~~--------~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~  347 (579)
T PLN03102        297 --------------------SPR--------SGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQD  347 (579)
T ss_pred             --------------------CCc--------ccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCcccccccccc
Confidence                                000        25788899999999999999876 6999999999999986544321100


Q ss_pred             -------------ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          432 -------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       432 -------------~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                                   ....+..+.+++++  +|.+.+.+..++.+.++.|||+|+|++++.|||++++.+.+.|.+|||+||
T Consensus       348 ~~~~~~~~~~~~~~~~~g~~~~~~~~v--~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TG  425 (579)
T PLN03102        348 EWNRLPENQQMELKARQGVSILGLADV--DVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTG  425 (579)
T ss_pred             ccccCCcccccccccCCCcccccccce--EEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecC
Confidence                         01123344455544  455523344444433468999999999999999999999999999999998

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=1.9e-47  Score=396.41  Aligned_cols=385  Identities=24%  Similarity=0.271  Sum_probs=313.6

Q ss_pred             cHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 010878           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (498)
Q Consensus        43 tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~  122 (498)
                      ++.++|...++.+|+++|+.+.   +      +++||.||.+++.++|..|++.|+.+|++|+++++|+++++++++||+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~   71 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA   71 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            3678999999999999999864   3      489999999999999999999999999999999999999999999999


Q ss_pred             HcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHH
Q 010878          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (498)
Q Consensus       123 ~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~  202 (498)
                      ++|++++|+++.++.+++..+++.++++++|++......+.+.... .+....++.+++.....     ........|++
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  145 (515)
T TIGR03098        72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPG-CHDLRTLILVGEPAHAS-----EGGGESPSWPK  145 (515)
T ss_pred             hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhc-ccccceEEEecCccccc-----CCccccccHHH
Confidence            9999999999999999999999999999999998766555443322 24455566665432110     00112345666


Q ss_pred             HHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHH
Q 010878          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (498)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~  282 (498)
                      +......  ....+...+++++++|||||||.||+|.++|.+++..+......+     .+..+|++++.+|++|.+++.
T Consensus       146 ~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~  218 (515)
T TIGR03098       146 LLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFN  218 (515)
T ss_pred             hhccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHH
Confidence            5543211  122334567899999999999999999999999998888776665     788899999999999999998


Q ss_pred             HHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccC
Q 010878          283 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  361 (498)
Q Consensus       283 ~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (498)
                      .++.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+....                             
T Consensus       219 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------  269 (515)
T TIGR03098       219 QLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP-----------------------------  269 (515)
T ss_pred             HHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-----------------------------
Confidence            88899999999998876 999999999999999999999999887541000                             


Q ss_pred             CCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCCccccCcccc
Q 010878          362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (498)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~  440 (498)
                               ..+        .+++|.+++||+++++++.+.+++.+ ++.+++.||+||++.............++++|+
T Consensus       270 ---------~~~--------~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~  332 (515)
T TIGR03098       270 ---------ESA--------APSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGK  332 (515)
T ss_pred             ---------CCC--------ccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcce
Confidence                     001        13899999999999999999999988 688999999999986655444333345589999


Q ss_pred             CcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhcc------------CCccccC
Q 010878          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------DGWFHTG  498 (498)
Q Consensus       441 ~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~------------dGw~~TG  498 (498)
                      |++|++++|++ +++..+  +.|+.|||+++|+.++.||+++++.+.+.|.            ++||+||
T Consensus       333 ~~~~~~~~i~~-~~~~~~--~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG  399 (515)
T TIGR03098       333 AIPNAEVLVLR-EDGSEC--APGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSG  399 (515)
T ss_pred             ecCCCEEEEEC-CCCCCC--CCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceecc
Confidence            99999999999 776654  4568999999999999999999998877662            3478887

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=8.9e-48  Score=434.98  Aligned_cols=393  Identities=23%  Similarity=0.280  Sum_probs=312.0

Q ss_pred             CCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 010878           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (498)
Q Consensus        37 ~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~  116 (498)
                      ..+...++.+.+.+.++++|+++|+++.   ++     +++||+||.++++++|+.|++ ++++||+|+++++|++++++
T Consensus       610 ~~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~  680 (1146)
T PRK08633        610 RKEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGAL  680 (1146)
T ss_pred             hcCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHH
Confidence            3456688999999999999999999853   33     489999999999999999987 58999999999999999999


Q ss_pred             HHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccc-cccCCccEEEEecCCcHHHHHHHhhcCc
Q 010878          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-RSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (498)
Q Consensus       117 ~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~~~~~~~~~~  195 (498)
                      +++||+++|++++|+++..+.+++.+++++++++++++++...+.+.+... ........++..++.....        .
T Consensus       681 ~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  752 (1146)
T PRK08633        681 ANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKI--------S  752 (1146)
T ss_pred             HHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhcccc--------c
Confidence            999999999999999999999999999999999999999877665532110 0112233444444321100        0


Q ss_pred             ceeeHHHHHhccccc-----cccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEE
Q 010878          196 KPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (498)
Q Consensus       196 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (498)
                      ....+++........     ........++++++++|||||||.||+|.++|.++...+......+     +..++|+++
T Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l  827 (1146)
T PRK08633        753 KVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVIL  827 (1146)
T ss_pred             hhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence            000111111110000     0001334678999999999999999999999999999988876666     788899999


Q ss_pred             EecChHHHHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHH
Q 010878          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (498)
Q Consensus       271 ~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (498)
                      +.+|++|.+|+.. ++.++..|+++++.+.  ++..+++.++++++|++.++|++++.+.+...                
T Consensus       828 ~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------  891 (1146)
T PRK08633        828 SSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKK----------------  891 (1146)
T ss_pred             EcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc----------------
Confidence            9999999999987 7788999999988764  89999999999999999999999998765211                


Q ss_pred             HHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCccccccc
Q 010878          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC  427 (498)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~  427 (498)
                                           .+..++        +++|.+++||+++++++.+++++.+|+++++.||+||++++++..
T Consensus       892 ---------------------~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~  942 (1146)
T PRK08633        892 ---------------------LHPLMF--------ASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVN  942 (1146)
T ss_pred             ---------------------cCcccC--------CCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEe
Confidence                                 111122        389999999999999999999999999999999999998877654


Q ss_pred             CCCC---------ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccC----Cc
Q 010878          428 FPDE---------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GW  494 (498)
Q Consensus       428 ~~~~---------~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~d----Gw  494 (498)
                      .++.         ....+++|+|+||++++|+|.++++  +++.|+.|||+++|++++.||+++++.+++.|.+    ||
T Consensus       943 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~ 1020 (1146)
T PRK08633        943 LPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFE--ELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGW 1020 (1146)
T ss_pred             cCcccccccccccCCCCCCccccCCCCEEEEEcCCCCc--cCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCe
Confidence            3321         1235789999999999999933344  4455699999999999999999999999998876    99


Q ss_pred             cccC
Q 010878          495 FHTG  498 (498)
Q Consensus       495 ~~TG  498 (498)
                      |+||
T Consensus      1021 ~~TG 1024 (1146)
T PRK08633       1021 YVTG 1024 (1146)
T ss_pred             EECC
Confidence            9998

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-47  Score=392.81  Aligned_cols=374  Identities=21%  Similarity=0.310  Sum_probs=302.7

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      |.++.++|.+.++.+|+++|+++.    +     +.+||.||.+++.++|..|.+.|++++++|+++++|+++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVYR----D-----QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA   71 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEEC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            568899999999999999999864    3     4899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++|+++..+.+++.++++.+++++++++.+.......        ....+.++.....             .+
T Consensus        72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~-------------~~  130 (497)
T PRK06145         72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL--------ETPKIVIDAAAQA-------------DS  130 (497)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc--------ccceEEecCcccc-------------hh
Confidence            99999999999999999999999999999999998765433210        1122222221110             01


Q ss_pred             HHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH
Q 010878          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (498)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g  280 (498)
                      ..+.... ..........++++++++|||||||.||+|.++|.++..........+     ++..+|+++..+|++|.++
T Consensus       131 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  204 (497)
T PRK06145        131 RRLAQGG-LEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGA  204 (497)
T ss_pred             HHHhccC-CCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhH
Confidence            1111110 011112234678999999999999999999999999987665544444     6888999999999999999


Q ss_pred             HHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 010878          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (498)
Q Consensus       281 ~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (498)
                      +.. .+.+++.|+++++.+. ++..+++.++++++|++.++|.++..++.....                          
T Consensus       205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~--------------------------  258 (497)
T PRK06145        205 FDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR--------------------------  258 (497)
T ss_pred             HHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc--------------------------
Confidence            876 5677999999988776 999999999999999999999999988652110                          


Q ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCC-CccccC
Q 010878          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD-EMCMVG  436 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~-~~~~~~  436 (498)
                                 ...++        +++|.+++||+++++++.+++.+.| +.++++.||+||+++.++..... .....+
T Consensus       259 -----------~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  319 (497)
T PRK06145        259 -----------DRFDL--------DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG  319 (497)
T ss_pred             -----------ccccc--------ccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCC
Confidence                       11112        2789999999999999999999988 67899999999999866654332 223347


Q ss_pred             ccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       437 s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ++|+|+++++++|+| +++..++  .++.|||+++|++++.||+++++.+.+.|.+|||+||
T Consensus       320 ~~G~~~~~~~~~i~~-~~~~~~~--~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TG  378 (497)
T PRK06145        320 STGRALAHVEIRIAD-GAGRWLP--PNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSG  378 (497)
T ss_pred             CcccCCCCceEEEEC-CCCCCCC--CCCceEEEEECcchhhhhcCChHHHHHHHhCCCeecc
Confidence            899999999999999 7765544  4589999999999999999999999999999999998

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9e-48  Score=411.99  Aligned_cols=359  Identities=21%  Similarity=0.247  Sum_probs=289.7

Q ss_pred             ccHHHHHHHHHHc--CCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           42 NTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        42 ~tl~~~l~~~~~~--~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      .|+.++|.+++..  +||++|++..          ..+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   73 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL   73 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3788999988876  7999999742          269999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++|++|.++.+++.+++++++++++|++......+...         .++                     .
T Consensus        74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~  123 (705)
T PRK06060         74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E  123 (705)
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence            9999999999999999999999999999999999987654433110         000                     0


Q ss_pred             HHHHHhcc-ccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhh-hhhccccCCCCCCcEEEEecChHH
Q 010878          200 WDEFLHLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD-LFLDQFEDKMTVDDVYLSFLPLAH  277 (498)
Q Consensus       200 ~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~-~~~~~~~~~~~~~d~~l~~~pl~h  277 (498)
                      ..++.... ...+....+..++++++++|||||||.||+|+++|.++.+.+..+. ..+     .+..+|++++..|++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  198 (705)
T PRK06060        124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF  198 (705)
T ss_pred             hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence            01111100 0011112234568899999999999999999999999988776553 233     6788999999999999


Q ss_pred             HHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          278 ILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       278 ~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      .+++.. ++.++..|+++++.+.  ++..+...++++++|+++++|.++.++++....                      
T Consensus       199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------  256 (705)
T PRK06060        199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----------------------  256 (705)
T ss_pred             hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------
Confidence            998864 7788999999998864  788889999999999999999999988652210                      


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCCcc
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC  433 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~~~  433 (498)
                                       .++        ++||.+++||+++++++.+++.+.+ ++++++.||+||++..+....... .
T Consensus       257 -----------------~~~--------~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-~  310 (705)
T PRK06060        257 -----------------DSF--------RSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDE-W  310 (705)
T ss_pred             -----------------ccc--------cceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCC-C
Confidence                             001        3899999999999999999999988 589999999999986554433222 2


Q ss_pred             ccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ..+++|+|+++++++|+| ++++.+  +.|+.|||||+|++++.||+++++.+..  .+|||+||
T Consensus       311 ~~~~iG~p~~~~~v~i~d-~~g~~~--~~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TG  370 (705)
T PRK06060        311 RLGTLGRVLPPYEIRVVA-PDGTTA--GPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTR  370 (705)
T ss_pred             CcCcccccCCCcEEEEEC-CCCCCC--CCCCceEEEEccchhhhhhhCCCccccc--CCCcEECC
Confidence            347899999999999999 776644  4558999999999999999999986422  57999998

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.6e-47  Score=397.25  Aligned_cols=388  Identities=27%  Similarity=0.367  Sum_probs=307.8

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..++.++|.+.++++|+++|+++.   +..    +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++|
T Consensus        17 ~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a   89 (558)
T PRK12583         17 TQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFA   89 (558)
T ss_pred             cCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence            357999999999999999999875   332    5899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh-----HHhhcccc------------cccCCccEEEEecCCc
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDC------------RSAQRLRVMVCFTSLT  183 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~------------~~~~~~~~vi~~~~~~  183 (498)
                      |+++|++++++++..+.+++..+++.++++++|++....     ..+.+...            ...+..+.++..+...
T Consensus        90 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (558)
T PRK12583         90 TARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP  169 (558)
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCC
Confidence            999999999999999999999999999999999976432     11111110            0112233344443221


Q ss_pred             HHHHHHHhhcCcceeeHHHHHhccccc-----cccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhcc
Q 010878          184 AEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ  258 (498)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~  258 (498)
                      .          .....|+++.......     ........++++++++|||||||.||+|.++|.++++++......+  
T Consensus       170 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~--  237 (558)
T PRK12583        170 P----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL--  237 (558)
T ss_pred             C----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh--
Confidence            1          0123444443322110     0111233578899999999999999999999999998888776666  


Q ss_pred             ccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHH
Q 010878          259 FEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (498)
Q Consensus       259 ~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~  335 (498)
                         ++..+|++++.+|++|.+|... ++.++..|+++++...  ++..+++.++++++|+++++|.++..+++....   
T Consensus       238 ---~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~---  311 (558)
T PRK12583        238 ---GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR---  311 (558)
T ss_pred             ---CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc---
Confidence               7888999999999999999877 6677999999887643  899999999999999999999998776542110   


Q ss_pred             hhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC-CceEee
Q 010878          336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQG  414 (498)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~l~~~  414 (498)
                                                        ...++        ++||.+++||+++++++.+++.+.++ ..+++.
T Consensus       312 ----------------------------------~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~  349 (558)
T PRK12583        312 ----------------------------------GNFDL--------SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIA  349 (558)
T ss_pred             ----------------------------------cCCCc--------hhheEEEecCCCCCHHHHHHHHHHcCCcceecc
Confidence                                              00112        38999999999999999999988886 479999


Q ss_pred             eccccCcccccccCCCC--ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-c
Q 010878          415 YGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I  491 (498)
Q Consensus       415 YG~tE~~~~~~~~~~~~--~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~  491 (498)
                      ||+||++.+++......  .....++|+|++++.++|+| +++..  ++.|+.|||+++|+.++.||+++++.+...| .
T Consensus       350 YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~--~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~  426 (558)
T PRK12583        350 YGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGAT--VPRGEIGELCTRGYSVMKGYWNNPEATAESIDE  426 (558)
T ss_pred             ccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCCCC--CCCCCeeEEEEEeCccchhhcCChHHHHhhcCC
Confidence            99999998776654322  22347899999999999999 66544  4455899999999999999999999998888 8


Q ss_pred             CCccccC
Q 010878          492 DGWFHTG  498 (498)
Q Consensus       492 dGw~~TG  498 (498)
                      +|||+||
T Consensus       427 ~~~~~TG  433 (558)
T PRK12583        427 DGWMHTG  433 (558)
T ss_pred             CCCeecc
Confidence            9999998

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=6.5e-47  Score=391.24  Aligned_cols=378  Identities=23%  Similarity=0.328  Sum_probs=305.2

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..++.+++...+ .+|+++|+...   ++     +.+||.||.++++++|..|++.|+++||+|+++++|+++++++++|
T Consensus         2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la   72 (504)
T PRK07514          2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA   72 (504)
T ss_pred             CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            468999999999 99999998764   34     5899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++|+++..+.+++..+++.++++++++++.....+.+....  .....++.++....             ..+
T Consensus        73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~  137 (504)
T PRK07514         73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AGAPHVETLDADGT-------------GSL  137 (504)
T ss_pred             HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cCCceEEEecCCCc-------------ccH
Confidence            999999999999999999999999999999999998776554332221  12233444433211             112


Q ss_pred             HHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH
Q 010878          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (498)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g  280 (498)
                      .+..... ..........++++++++|||||||.||+|.++|.+++..+......+     ++.++|++++.+|++|..+
T Consensus       138 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  211 (504)
T PRK07514        138 LEAAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHG  211 (504)
T ss_pred             HHhhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHH
Confidence            2221111 111122334678999999999999999999999999999887766655     7888999999999999999


Q ss_pred             HHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 010878          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (498)
Q Consensus       281 ~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (498)
                      +.. ++.++..|+++++.+. ++..+++.+  .++|++.++|.++..+++...                           
T Consensus       212 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~---------------------------  262 (504)
T PRK07514        212 LFVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR---------------------------  262 (504)
T ss_pred             HHHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC---------------------------
Confidence            876 6678999999998876 899999998  479999999999988764210                           


Q ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCcc
Q 010878          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~  438 (498)
                                .+..++        +++|.+++||+++++++.+.+++.++.++++.||+||++..+...... .....++
T Consensus       263 ----------~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~  323 (504)
T PRK07514        263 ----------LTREAA--------AHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDG-ERRAGTV  323 (504)
T ss_pred             ----------CCcccc--------cceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccc-cccCccc
Confidence                      011112        389999999999999999999999999999999999998655433322 2334789


Q ss_pred             ccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       439 G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      |.|+++++++|+|.+++  .+++.|+.|||+|+|++++.||+++++.+++.| .+|||+||
T Consensus       324 G~~~~~~~v~i~d~~~~--~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TG  382 (504)
T PRK07514        324 GFPLPGVSLRVTDPETG--AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITG  382 (504)
T ss_pred             ccCCCCcEEEEEECCCC--CCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeec
Confidence            99999999999993334  345566899999999999999999999999999 68999998

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5e-47  Score=403.16  Aligned_cols=394  Identities=21%  Similarity=0.224  Sum_probs=296.1

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~  121 (498)
                      .|+.+.+..+  .+|+++|+++.   + .++..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||
T Consensus        86 ~n~~~~~~~~--~~~~~~Al~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~  159 (655)
T PRK03584         86 LNYAENLLRH--RRDDRPAIIFR---G-EDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLAT  159 (655)
T ss_pred             eeHHHHhhcc--CCCCCeEEEEE---C-CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            3555544432  58999999986   3 3344578999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh---------HHhhcccccccCCccEEEEecCCcHHHHHHHhh
Q 010878          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (498)
Q Consensus       122 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  192 (498)
                      +++|++++|+++.++.+++.++++.++++++|+++...         ..+.+.. ...+..+.++.+.......   ...
T Consensus       160 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~---~~~  235 (655)
T PRK03584        160 ASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELR-AALPSLEHVVVVPYLGPAA---AAA  235 (655)
T ss_pred             HHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEecCCCcc---ccc
Confidence            99999999999999999999999999999999987532         1121111 1224445555554321100   000


Q ss_pred             cCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHH-hhhhhhhhccccCCCCCCcEEEE
Q 010878          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDVYLS  271 (498)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~~l~  271 (498)
                      .......|+++................+++++|+|||||||.||||+++|.+++.+ +......+     ++.++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~  310 (655)
T PRK03584        236 ALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGPGDRFFW  310 (655)
T ss_pred             ccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence            01123456666642212222233456789999999999999999999999987644 44444444     7888999999


Q ss_pred             ecChHHHHHHHHHHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHH
Q 010878          272 FLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (498)
Q Consensus       272 ~~pl~h~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (498)
                      ..++.|+.+. .++.+|+.|+++++.++     ++..+++.++++++|++..+|++++.+.+...               
T Consensus       311 ~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---------------  374 (655)
T PRK03584        311 YTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL---------------  374 (655)
T ss_pred             cCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC---------------
Confidence            9999987543 35678999999998753     78999999999999999999999988754100               


Q ss_pred             HHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc--CCceEeeeccccCcccc
Q 010878          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPT  424 (498)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--g~~l~~~YG~tE~~~~~  424 (498)
                                         .+ ....++        ++||.+++||+++++++.+++.+.+  ++.+++.||+||+++..
T Consensus       375 -------------------~~-~~~~~l--------~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~  426 (655)
T PRK03584        375 -------------------VP-GETHDL--------SALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCF  426 (655)
T ss_pred             -------------------Cc-cccCCh--------hheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhccc
Confidence                               00 011223        3899999999999999999999988  47899999999987654


Q ss_pred             cccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecC--CCcccccCCchhhh--hh-c--cCCcccc
Q 010878          425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ES-I--IDGWFHT  497 (498)
Q Consensus       425 ~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~--~~-f--~dGw~~T  497 (498)
                      ....+.....++++|.|++|++++|+| +++..+   .|+.|||+|+|+  +++.|||++++.+.  +. |  .+|||+|
T Consensus       427 ~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~T  502 (655)
T PRK03584        427 VGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRH  502 (655)
T ss_pred             ccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeec
Confidence            433222233458899999999999999 777654   468999999996  79999999998553  22 2  2688899


Q ss_pred             C
Q 010878          498 G  498 (498)
Q Consensus       498 G  498 (498)
                      |
T Consensus       503 G  503 (655)
T PRK03584        503 G  503 (655)
T ss_pred             C
Confidence            8

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=5.6e-47  Score=393.98  Aligned_cols=382  Identities=18%  Similarity=0.185  Sum_probs=303.4

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      +.++.++|+++++  |+++|+++.    +     +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++|
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la   92 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG----E-----RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA   92 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence            4679999998887  999999864    3     4899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh----HHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (498)
                      |+++|++++++.+.....++..+++.+++++++++....    ....+......+..+.++..++..             
T Consensus        93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------  159 (536)
T PRK10946         93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG-------------  159 (536)
T ss_pred             HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC-------------
Confidence            999999888777777788899999999999999986421    111121222223344444443211             


Q ss_pred             eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010878          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                      ...+.+++..... .....+..++++++++|||||||.||+|+++|.++...+......+     .+..+|++++.+|++
T Consensus       160 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~  233 (536)
T PRK10946        160 EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAA  233 (536)
T ss_pred             CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCcc
Confidence            1234444433211 1222344678999999999999999999999999999988876665     788999999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010878          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (498)
Q Consensus       277 h~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (498)
                      |.+++..  ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++.......                  
T Consensus       234 h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~------------------  295 (536)
T PRK10946        234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGS------------------  295 (536)
T ss_pred             ccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCc------------------
Confidence            9988764  6778999999988765 899999999999999999999999998764311100                  


Q ss_pred             HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcc
Q 010878          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~  433 (498)
                                       ...        .++||.+++||+++++++.+.+.+.+|+++++.||+||++............
T Consensus       296 -----------------~~~--------~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~  350 (536)
T PRK10946        296 -----------------RAQ--------LASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDER  350 (536)
T ss_pred             -----------------ccc--------ccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCcccc
Confidence                             000        1389999999999999999999998999999999999975433322222233


Q ss_pred             ccCccccCc-CCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      ..+++|+|+ |+++++|+| ++++.++  .|+.|||+++|+.++.||+++++.+.+.| .||||+||
T Consensus       351 ~~~~~G~p~~~~~~v~i~d-~~~~~~~--~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TG  414 (536)
T PRK10946        351 IFTTQGRPMSPDDEVWVAD-ADGNPLP--QGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG  414 (536)
T ss_pred             ccccCCcccCCCceEEEEC-CCCCCCC--CCCccEEEEecCccchhhcCCcccchhhcccCCceecC
Confidence            447899999 899999999 7776544  55999999999999999999999999999 79999998

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.2e-47  Score=393.64  Aligned_cols=382  Identities=22%  Similarity=0.242  Sum_probs=308.1

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...|+.++|.++++++|+++|+++.    +     ..+||.||.++++++|..|.+.|+++|++|+++++|+++++++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~l   80 (524)
T PRK06188         10 SGATYGHLLVSALKRYPDRPALVLG----D-----TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG   80 (524)
T ss_pred             CCccHHHHHHHHHHHCCCCeEEEEC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3468999999999999999999874    3     489999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCc-hhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK-KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      ||+++|++++|+++..+.+++..+++.++++.+++++. ......+. .........++.+.......           .
T Consensus        81 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~  148 (524)
T PRK06188         81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALAL-LARVPSLKHVLTLGPVPDGV-----------D  148 (524)
T ss_pred             HHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHH-hhhcCCceEEEEeCCccchh-----------h
Confidence            99999999999999999999999999999999999876 33332221 22223445555555432100           0


Q ss_pred             eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                      .++... ...... ......++++++++|||||||.||+|.++|.++...+......+     .+..+|++++.+|++|.
T Consensus       149 ~~~~~~-~~~~~~-~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~  221 (524)
T PRK06188        149 LLAAAA-KFGPAP-LVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSHA  221 (524)
T ss_pred             HHHhhh-ccCccc-ccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchhh
Confidence            011111 100111 11122456699999999999999999999999999888877666     78899999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 010878          279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (498)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (498)
                      .++. ++.+++.|+++++.+. ++..+++.++++++|+++++|.++..+++....                         
T Consensus       222 ~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~-------------------------  275 (524)
T PRK06188        222 GGAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL-------------------------  275 (524)
T ss_pred             hhHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCc-------------------------
Confidence            8874 5677999999999877 899999999999999999999999988753211                         


Q ss_pred             cccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC-----c
Q 010878          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----M  432 (498)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~-----~  432 (498)
                                  ...++        +++|.+++||++++++..+.+.+.++..+++.||+||++..+.......     .
T Consensus       276 ------------~~~~l--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  335 (524)
T PRK06188        276 ------------RTRDL--------SSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDP  335 (524)
T ss_pred             ------------cCCCC--------cceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhcccccc
Confidence                        00112        3899999999999999988888888999999999999976665543322     2


Q ss_pred             cccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       433 ~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ....++|+|++|++++|+| +++..++  .|+.|||+++|+.++.||+++++.+...|.+|||+||
T Consensus       336 ~~~~~~G~p~~g~~v~i~~-~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG  398 (524)
T PRK06188        336 KRLTSCGRPTPGLRVALLD-EDGREVA--QGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTG  398 (524)
T ss_pred             ccCCccccccCCcEEEEEc-CCCCCCC--CCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeec
Confidence            3447899999999999999 7766544  5589999999999999999999999998999999998

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=2e-47  Score=438.08  Aligned_cols=386  Identities=18%  Similarity=0.090  Sum_probs=296.0

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCC---CCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGK---FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~---~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~  117 (498)
                      ..++.++|++.++.+|+++|+++.   +..   ....+++||+||.++++++|++|++.|+++|++|+|+++|+++++++
T Consensus       235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~  311 (1389)
T TIGR03443       235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA  311 (1389)
T ss_pred             cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence            368999999999999999999864   211   12236899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCch---hHHhhcccccc---cCCccEEEEecCCcHHHHHHHh
Q 010878          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK---VKELLSPDCRS---AQRLRVMVCFTSLTAEQKEMAV  191 (498)
Q Consensus       118 ~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---~~~~~~~~~~~---~~~~~~vi~~~~~~~~~~~~~~  191 (498)
                      ++||+++|++++|++|.++.+++.++++.+++++++++...   ...+.+.....   ......+ .+.+.....     
T Consensus       312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----  385 (1389)
T TIGR03443       312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPAL-ALQDDGSLV-----  385 (1389)
T ss_pred             HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceE-Eeccccccc-----
Confidence            99999999999999999999999999999999999987642   11111100000   0011111 111110000     


Q ss_pred             hcCcceeeHHHHHhccc--cccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEE
Q 010878          192 QTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (498)
Q Consensus       192 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (498)
                       .........++.....  ..........++++++++|||||||.||||+++|+++++.+.+....+     ++.++|++
T Consensus       386 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  459 (1389)
T TIGR03443       386 -GGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF  459 (1389)
T ss_pred             -ccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence             0000000000100000  001111224578999999999999999999999999999988877666     78899999


Q ss_pred             EEecChHHHHHHHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHH
Q 010878          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (498)
Q Consensus       270 l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (498)
                      +...|++|..++..++.+|+.|+++++.+.    ++..+++.++++++|+++++|++++.+.....   .          
T Consensus       460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~----------  526 (1389)
T TIGR03443       460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT---T----------  526 (1389)
T ss_pred             EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc---c----------
Confidence            999999999998889999999999998764    68899999999999999999999988753110   0          


Q ss_pred             HHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccc
Q 010878          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT  424 (498)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~  424 (498)
                                                 +        .++||.+++||+++++.+.+++...+ ++++++.||+||++..+
T Consensus       527 ---------------------------~--------~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  571 (1389)
T TIGR03443       527 ---------------------------P--------IPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAV  571 (1389)
T ss_pred             ---------------------------c--------CCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeE
Confidence                                       0        13899999999999999999888765 78999999999998766


Q ss_pred             cccCCCC----------ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc
Q 010878          425 TVCFPDE----------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  490 (498)
Q Consensus       425 ~~~~~~~----------~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f  490 (498)
                      +......          .....++|+|+++++++|+| +++...+++.|+.|||+|+|+++++||+++|+.|++.|
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f  646 (1389)
T TIGR03443       572 SYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKF  646 (1389)
T ss_pred             EEEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhc
Confidence            6533211          01235789999999999999 66665667778999999999999999999999999887

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=8.3e-47  Score=399.92  Aligned_cols=395  Identities=19%  Similarity=0.178  Sum_probs=289.8

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..|+.+.+..   ..++++|+++.   +. ++..+.+||+||.+++.++|+.|+++|+++||+|+++++|++++++++||
T Consensus        86 ~~n~~~~~~~---~~~~~~a~~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA  158 (652)
T TIGR01217        86 RLNYAENLLR---AAGTEPALLYV---DE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLA  158 (652)
T ss_pred             eeeHHHHHhc---cCCCCeEEEEE---CC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            3444444433   35789999886   33 34457899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh---------HHhhcccccccCCccEEEEecCCcHHHHHHHh
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~  191 (498)
                      |+++|++++|+++.++++++.+++++++++++|+++...         ..+.+.. ...+.++.++.+.........  .
T Consensus       159 ~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~--~  235 (652)
T TIGR01217       159 TASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVR-KELPTLRAVVHIPYLGPRETE--A  235 (652)
T ss_pred             HHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEeCCCCcccc--c
Confidence            999999999999999999999999999999999987532         2222222 223445556655422100000  0


Q ss_pred             hcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHH-hhhhhhhhccccCCCCCCcEEE
Q 010878          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDVYL  270 (498)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~~l  270 (498)
                      ........|+++................+++++|+|||||||.||||+++|.+++.. .......+     ++.++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~  310 (652)
T TIGR01217       236 PKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGPGDRLF  310 (652)
T ss_pred             ccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCCCcEEE
Confidence            000113457776643211112223345689999999999999999999999986543 33333334     788899999


Q ss_pred             EecChHHHHHHHHHHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHH
Q 010878          271 SFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (498)
Q Consensus       271 ~~~pl~h~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (498)
                      +..|+.|+.+ ..++.+|+.|++++++++     ++..+++.++++++|++..+|.++..+.+.-               
T Consensus       311 ~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~---------------  374 (652)
T TIGR01217       311 YYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAG---------------  374 (652)
T ss_pred             EeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcC---------------
Confidence            9999999754 335578999999999853     6789999999999999877777766553210               


Q ss_pred             HHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC--CceEeeeccccCccc
Q 010878          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGP  423 (498)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g--~~l~~~YG~tE~~~~  423 (498)
                                          .......+++        +||.+++||+++++++.+++.+.++  ..+.+.||+||+++.
T Consensus       375 --------------------~~~~~~~~l~--------sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~  426 (652)
T TIGR01217       375 --------------------VHPARTHDLS--------ALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSC  426 (652)
T ss_pred             --------------------CCccccCChh--------heeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhcc
Confidence                                0001122333        8999999999999999999998885  467789999997544


Q ss_pred             ccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecC--CCcccccCCchhhh--hh-cc--CCccc
Q 010878          424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ES-II--DGWFH  496 (498)
Q Consensus       424 ~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~--~~-f~--dGw~~  496 (498)
                      .....+......+++|.|.+|++++|+| ++++.+   .|+.|||+++||  +++.|||++++.+.  +. |.  +|||+
T Consensus       427 ~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~  502 (652)
T TIGR01217       427 FAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWR  502 (652)
T ss_pred             ccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEE
Confidence            3332222223348899999999999999 777755   368999999996  68999999998654  22 32  68888


Q ss_pred             cC
Q 010878          497 TG  498 (498)
Q Consensus       497 TG  498 (498)
                      ||
T Consensus       503 tG  504 (652)
T TIGR01217       503 HG  504 (652)
T ss_pred             cC
Confidence            88

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.5e-46  Score=388.71  Aligned_cols=381  Identities=22%  Similarity=0.222  Sum_probs=306.3

Q ss_pred             ccHHHHHHHH-HHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           42 NTAWDIFSMS-VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        42 ~tl~~~l~~~-~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ++..+++.++ ++.+||++|+++.    +     ..+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++|
T Consensus         4 ~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a   74 (508)
T TIGR02262         4 NAAEDLLDRNVVEGRGGKTAFIDD----I-----SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLG   74 (508)
T ss_pred             hHHHHHHHHHHhcccCCceEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            4556777776 6779999999753    2     4899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++|+++..+.+++.++++.+++++++++......+.+... ..+..+.++..+....           ....+
T Consensus        75 ~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~  142 (508)
T TIGR02262        75 AIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALG-KSPHLEHRVVVGRPEA-----------GEVQL  142 (508)
T ss_pred             HHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHh-cCCCccEEEEeCCCCc-----------ccccH
Confidence            99999999999999999999999999999999999877665543322 2234455555543211           12234


Q ss_pred             HHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhh-hhhhhccccCCCCCCcEEEEecChHHHH
Q 010878          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (498)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~~pl~h~~  279 (498)
                      .++...... ........++++++++|||||||.||+|.++|.++...+.. ....+     +++.+|+++..+|++|.+
T Consensus       143 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  216 (508)
T TIGR02262       143 AELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFAY  216 (508)
T ss_pred             HHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHHH
Confidence            444432211 11222345789999999999999999999999999887765 22333     688899999999999999


Q ss_pred             HHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010878          280 DRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (498)
Q Consensus       280 g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (498)
                      ++.. ++.++..|+++++.+.  ++..+++.|+++++|.++++|.++..+++....                        
T Consensus       217 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~------------------------  272 (508)
T TIGR02262       217 GLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL------------------------  272 (508)
T ss_pred             HHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccc------------------------
Confidence            9976 6677999999988765  799999999999999999999988776531100                        


Q ss_pred             hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccC
Q 010878          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~  436 (498)
                                   ...+        ..++|.+++||+++++++.+.|.+.+|+++++.||+||++.++........ ..+
T Consensus       273 -------------~~~~--------~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~-~~~  330 (508)
T TIGR02262       273 -------------PAED--------QVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDV-RYG  330 (508)
T ss_pred             -------------cccc--------cccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCC-CCC
Confidence                         0000        138999999999999999999999999999999999999876655433322 337


Q ss_pred             ccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       437 s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ++|+|++|++++|+| +++..+  +.|+.|||+++|+.++.||+++++.+.+.|.+|||+||
T Consensus       331 ~~G~~~~g~~v~i~d-~~~~~~--~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TG  389 (508)
T TIGR02262       331 TSGKPVPGYRLRLVG-DGGQDV--AAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSG  389 (508)
T ss_pred             CcCCCCCCcEEEEEC-CCCCCC--CCCCeeEEEEecCccccccCCCHHHhHhhhhcCceecc
Confidence            899999999999999 766544  45589999999999999999999999998999999998

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=2.7e-46  Score=389.56  Aligned_cols=401  Identities=23%  Similarity=0.288  Sum_probs=304.2

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ..+.++.++|.+.++.+|+++|+.+.    +     +.+||.||.++++++|..|.+.|+++|++|+++++|++++++++
T Consensus        18 ~~~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~   88 (541)
T TIGR03205        18 IARGTLPDLLSKAAADYGPRPALEFR----D-----RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINF   88 (541)
T ss_pred             CCCCCHHHHHHHHHHHcCCCceEEEC----C-----cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            34568999999999999999998764    3     48999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCch--hHHhhcccccccCCccEEEEecCCcH-HHH-H-HHhhc
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK--VKELLSPDCRSAQRLRVMVCFTSLTA-EQK-E-MAVQT  193 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~vi~~~~~~~-~~~-~-~~~~~  193 (498)
                      +||+++|++++|++|..+.+++.++++.++++++|+++..  ...+.+....  .....++.+..... ... . .....
T Consensus        89 la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (541)
T TIGR03205        89 FGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPIPA  166 (541)
T ss_pred             HHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEecccccccccccccccCC
Confidence            9999999999999999999999999999999999998632  1111111110  11233333332110 000 0 00001


Q ss_pred             CcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhcc-ccCCCCCCcEEEEe
Q 010878          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ-FEDKMTVDDVYLSF  272 (498)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~-~~~~~~~~d~~l~~  272 (498)
                      .....+++++...... ........++++++++|||||||.||+|+++|.++....... ..+.. ........+++++.
T Consensus       167 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~  244 (541)
T TIGR03205       167 DPRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICV  244 (541)
T ss_pred             CcccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEe
Confidence            1123456666543211 111223457899999999999999999999999987654422 11100 00122345799999


Q ss_pred             cChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 010878          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (498)
Q Consensus       273 ~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (498)
                      +|++|.+++.. ++.++..|+++++... ++..+++.|+++++|++.++|.++..+++...                   
T Consensus       245 ~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------  305 (541)
T TIGR03205       245 LPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS-------------------  305 (541)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc-------------------
Confidence            99999999876 6678999999888765 99999999999999999999999988754110                   


Q ss_pred             HHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCC
Q 010878          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (498)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~  430 (498)
                                        ....++        +++|.+++||+++++++.+++.+.++.++++.||+||++..++.....
T Consensus       306 ------------------~~~~~~--------~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~  359 (541)
T TIGR03205       306 ------------------LEKRDL--------SSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPE  359 (541)
T ss_pred             ------------------ccccCc--------cccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCC
Confidence                              001112        389999999999999999999888899999999999999877665443


Q ss_pred             CccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       431 ~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ....++++|.|++++.++|++. +....++..|+.|||+++|++++.||+++++.+.+.|.+|||+||
T Consensus       360 ~~~~~~~~G~~~~~~~~~v~~~-d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TG  426 (541)
T TIGR03205       360 GPDKPGSIGLMLPGIELDVVSL-DDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTG  426 (541)
T ss_pred             CCCCCCCcceeccCceeEEEec-CCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccC
Confidence            3334578999999999998752 222234555689999999999999999999999998989999998

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-46  Score=392.27  Aligned_cols=391  Identities=20%  Similarity=0.229  Sum_probs=303.2

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      +...++.++|.+.++.+|+++|++..    +     +++||.||.+++.++|+.|.+.|+++||+|+++++|++++++++
T Consensus         7 ~~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~   77 (540)
T PRK06164          7 PRADTLASLLDAHARARPDAVALIDE----D-----RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLF   77 (540)
T ss_pred             cCCCCHHHHHHHHHHhCCCCeEEecC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHH
Confidence            34468999999999999999999853    3     48999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh-----HHhhcccccccCCccEEEEecCCcHHHHHHHhhc
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~  193 (498)
                      +||+++|++++|+++..+.+++.++++.++++++|++++..     ..+...........+.++.+++.....     . 
T Consensus        78 la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-  151 (540)
T PRK06164         78 LACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT-----P-  151 (540)
T ss_pred             HHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccC-----C-
Confidence            99999999999999999999999999999999999987642     112222222223445555554211100     0 


Q ss_pred             CcceeeHHHHHhccccccc---cCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEE
Q 010878          194 GIKPYSWDEFLHLGKVNEM---EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (498)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (498)
                      ......+.++.........   ......++++++++|||||||.||+|.++|.++...+..+...+     ++..+++++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l  226 (540)
T PRK06164        152 APAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLL  226 (540)
T ss_pred             CCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence            0000011111111000000   01223468899999999999999999999999999888877766     788999999


Q ss_pred             EecChHHHHHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 010878          271 SFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  349 (498)
Q Consensus       271 ~~~pl~h~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (498)
                      +.+|++|.+|+..++.++..|+++++.+. ++..+++.++++++|+++++|.++..+.+...                  
T Consensus       227 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~------------------  288 (540)
T PRK06164        227 AALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG------------------  288 (540)
T ss_pred             EcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc------------------
Confidence            99999999999888899999999988776 89999999999999999999999999876310                  


Q ss_pred             HHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcC-CCCCHHHHHHHHHhcCCceEeeeccccCcccccccC
Q 010878          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG-APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (498)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G-~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~  428 (498)
                                          ...++        +++|.+.++| .+...++.+++... |+++++.||+||++.+++...
T Consensus       289 --------------------~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~  339 (540)
T PRK06164        289 --------------------ERADF--------PSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQP  339 (540)
T ss_pred             --------------------ccCCC--------cceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccC
Confidence                                00111        3788877665 56667777777765 899999999999988766554


Q ss_pred             CCC--ccccCccccCc-CCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          429 PDE--MCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       429 ~~~--~~~~~s~G~~~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      ...  .....++|.++ ++++++|+| ++++ .+++.|+.|||||+|++++.||+++++.+.+.| .+|||+||
T Consensus       340 ~~~~~~~~~~~~g~~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TG  411 (540)
T PRK06164        340 ATDPVSVRIEGGGRPASPEARVRARD-PQDG-ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTG  411 (540)
T ss_pred             CCCCCcceeccCccccCCCeEEEEec-CCCC-cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecC
Confidence            332  22235678775 899999999 4433 344566999999999999999999999999999 78999998

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=2.4e-46  Score=391.81  Aligned_cols=398  Identities=23%  Similarity=0.312  Sum_probs=305.1

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ..++.++|...++++|+++|+++.    +     +++||.||.+++.++|..|. +.|+++|++|+++++|+++++++++
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   94 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF   94 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999999864    3     58999999999999999997 6899999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcH----HH-------HH
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA----EQ-------KE  188 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~----~~-------~~  188 (498)
                      ||+++|++++|++|.++.+++.+++.+++++++++++.....+.+....  .....++.......    ..       ..
T Consensus        95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (560)
T PRK08751         95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIAD--TPVKQVITTGLGDMLGFPKAALVNFVVKY  172 (560)
T ss_pred             HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhC--CCccEEEEechhhhcccccchhhhhhhhh
Confidence            9999999999999999999999999999999999988766554433221  12233333211000    00       00


Q ss_pred             HH----hhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCC
Q 010878          189 MA----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (498)
Q Consensus       189 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~  264 (498)
                      ..    .........+++................++++++++|||||||.||+|.++|.++...+......+... ..+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~-~~~~  251 (560)
T PRK08751        173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGT-GKLE  251 (560)
T ss_pred             hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccc-cccC
Confidence            00    000011123444443322212222334678999999999999999999999999988777654433110 0123


Q ss_pred             C-CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchH
Q 010878          265 V-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (498)
Q Consensus       265 ~-~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~  340 (498)
                      . ++++++.+|++|.+++.. .+.++..|++.++...  ++..+++.++++++|++.++|.++..+++..          
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----------  321 (560)
T PRK08751        252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTP----------  321 (560)
T ss_pred             CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCc----------
Confidence            3 467888999999999875 5566777777766553  8899999999999999999999998876421          


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccC
Q 010878          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET  420 (498)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~  420 (498)
                                                 ..+..+++        +||.+++||+++++.+.+.+++.+|+++++.||+||+
T Consensus       322 ---------------------------~~~~~~l~--------~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~  366 (560)
T PRK08751        322 ---------------------------GFDQIDFS--------SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET  366 (560)
T ss_pred             ---------------------------CcCCcchh--------hheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence                                       11122333        8999999999999999999999889999999999999


Q ss_pred             cccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       421 ~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      ++.++..........+++|.|+++++++|+| +++..++  .++.|||+|+|+.++.||+++++.+.+.| .+|||+||
T Consensus       367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TG  442 (560)
T PRK08751        367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLA--IGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTG  442 (560)
T ss_pred             CCceecccccccccCCCcCccCCCceEEEEC-CCCCCCC--CCCceEEEEecCccchhhcCChhhhhhccccCCCcccc
Confidence            8877665543334457899999999999999 7776554  45899999999999999999999998888 78999998

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.1e-46  Score=390.40  Aligned_cols=394  Identities=22%  Similarity=0.263  Sum_probs=307.5

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      .+..++.++|+.+++.+||+++++..    . ++..+++||.||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~   81 (542)
T PRK06018          7 DWPLLCHRIIDHAARIHGNREVVTRS----V-EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAW   81 (542)
T ss_pred             cCCCCHHHHHHHHHHhCCCceEEEee----c-cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHH
Confidence            45579999999999999999999752    1 123468999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      +||+++|++++|+++..+.+++.++++.++++.++++......+.+.... .+..+.++.+.+....    .........
T Consensus        82 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~  156 (542)
T PRK06018         82 YGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADK-LPSVERYVVLTDAAHM----PQTTLKNAV  156 (542)
T ss_pred             HHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhh-CCCccEEEEecccccc----cccCccccc
Confidence            99999999999999999999999999999999999998877666443322 2445555555432110    000011223


Q ss_pred             eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHH-HHh-hhhhhhhccccCCCCCCcEEEEecChH
Q 010878          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA-TFV-SGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~-~~~-~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                      .++++...... ........++++++++|||||||.||+|.++|.+.+ ... ......+     ++..+|+++...|++
T Consensus       157 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~  230 (542)
T PRK06018        157 AYEEWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLF  230 (542)
T ss_pred             cHHHHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHH
Confidence            45665543211 112233466789999999999999999999999743 222 2222233     678899999999999


Q ss_pred             HHHHHHHHHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          277 HILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       277 h~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      |.+++...+.++..|+++++...  ++..+++.++++++|+++++|++++.+++......                    
T Consensus       231 h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------  290 (542)
T PRK06018        231 HANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG--------------------  290 (542)
T ss_pred             HHhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC--------------------
Confidence            99998877788999999988653  88999999999999999999999998875332110                    


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC---
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---  431 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~---  431 (498)
                                       .++        ++||.+++||+++++++.+++++ +++++++.||+||++.+++......   
T Consensus       291 -----------------~~~--------~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~  344 (542)
T PRK06018        291 -----------------LKL--------PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFS  344 (542)
T ss_pred             -----------------CCc--------ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccc
Confidence                             011        38999999999999999999999 8999999999999987765442110   


Q ss_pred             -------ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          432 -------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       432 -------~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                             .....++|+|.+|++++|+| +++..++.+.+..|||+++|++++.||+++.   ...+ .+|||+||
T Consensus       345 ~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TG  415 (542)
T PRK06018        345 KLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTG  415 (542)
T ss_pred             cCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcC
Confidence                   01235789999999999999 8888777755568999999999999999832   2334 68999998

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=2.2e-46  Score=398.45  Aligned_cols=397  Identities=19%  Similarity=0.155  Sum_probs=292.8

Q ss_pred             ccHH-HHHHHHHHcCCCCCceeeccccCCC--CCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           42 NTAW-DIFSMSVQKYPGNRMLGWRPFVDGK--FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        42 ~tl~-~~l~~~~~~~pd~~a~~~~~~~d~~--~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      .|+. .+|+++++.+|+++|+++.   +..  ++.++++||+||.+++.++|+.|+++|+++||+|+++++|++++++++
T Consensus       174 ln~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~  250 (728)
T PLN03052        174 LNVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIY  250 (728)
T ss_pred             eEHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            3444 4677766678999999986   432  234578999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHH-----hhcccccccCCccEEEEecCCcHHHHHHHhhc
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE-----LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~  193 (498)
                      +||+++|++++|+++.++++++.+++++++++++|+++.....     ..+.......  ..++++.......   ....
T Consensus       251 LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~---~~~~  325 (728)
T PLN03052        251 LAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSV---RVKL  325 (728)
T ss_pred             HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcc---cccc
Confidence            9999999999999999999999999999999999998754311     0000000111  1233332211000   0000


Q ss_pred             CcceeeHHHHHhcccc----ccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEE
Q 010878          194 GIKPYSWDEFLHLGKV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (498)
Q Consensus       194 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (498)
                      ......|++++.....    .........++++++|+|||||||.||||+++|.+++..+......+     ++.++|++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l~~~d~~  400 (728)
T PLN03052        326 REGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DIRKGDIV  400 (728)
T ss_pred             ccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CCCCCcEE
Confidence            0013457776643211    11111223568999999999999999999999999877665544444     78889999


Q ss_pred             EEecChHHHHHHHHHHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHH
Q 010878          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (498)
Q Consensus       270 l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (498)
                      ++..|+.|+.+...++.+|..|+++++.++  ++..+++.++++++|++.++|++++.+.+..                 
T Consensus       401 ~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~-----------------  463 (728)
T PLN03052        401 CWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTN-----------------  463 (728)
T ss_pred             EECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcC-----------------
Confidence            999999999998777889999999999876  5578999999999999999999999875420                 


Q ss_pred             HHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC-CceEeeeccccCcccccc
Q 010878          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTV  426 (498)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~l~~~YG~tE~~~~~~~  426 (498)
                                          ..+..|++        +||.++++|++++++..+++.+.++ .++.+.||+||+++.+..
T Consensus       464 --------------------~~~~~dls--------sLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~  515 (728)
T PLN03052        464 --------------------CMAGLDWS--------SIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVT  515 (728)
T ss_pred             --------------------CcccCChh--------heeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCccccc
Confidence                                01122343        8999999999999999888888776 589999999999865443


Q ss_pred             cCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecC--CCcccccCCchhhhhhcc-----CC--cccc
Q 010878          427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESII-----DG--WFHT  497 (498)
Q Consensus       427 ~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~~~f~-----dG--w~~T  497 (498)
                      ........++++|.|.+|++++|+| ++|+.++.+..+.|||+++++  ....+|+++. ....-|.     .|  ||+|
T Consensus       516 ~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~t  593 (728)
T PLN03052        516 GSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRH  593 (728)
T ss_pred             CCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEec
Confidence            3222223458899999999999999 888766654324699999865  3335677654 2322231     24  8888


Q ss_pred             C
Q 010878          498 G  498 (498)
Q Consensus       498 G  498 (498)
                      |
T Consensus       594 G  594 (728)
T PLN03052        594 G  594 (728)
T ss_pred             C
Confidence            8

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=3.3e-47  Score=463.81  Aligned_cols=369  Identities=18%  Similarity=0.234  Sum_probs=307.8

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      +...++.++|.+.++++|+++|+++.   +      .++||+||.++++++|+.|++.|+++|++|+++++|++++++++
T Consensus      3092 ~~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~ 3162 (3956)
T PRK12467       3092 PSERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVAL 3162 (3956)
T ss_pred             CccccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHH
Confidence            34479999999999999999999875   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      |||+++|++++|++|.++.+++.+++++++++++|++......+...      ....++.++...               
T Consensus      3163 lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------~~~~~~~~~~~~--------------- 3221 (3956)
T PRK12467       3163 LAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------AGDTALTLDRLD--------------- 3221 (3956)
T ss_pred             HHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------cCCceeeecchh---------------
Confidence            99999999999999999999999999999999999998765443211      111222222110               


Q ss_pred             eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                            ........+.....+++++|++|||||||.||||+++|+++.+.+......+     +++++|+++.++|++|.
T Consensus      3222 ------~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 3290 (3956)
T PRK12467       3222 ------LNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFD 3290 (3956)
T ss_pred             ------hcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHh
Confidence                  0000111222345678999999999999999999999999999999887777     88999999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEeCC---ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010878          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (498)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (498)
                      .++..++.+|+.|+++++.+.   ++..+++.|+++++|++.++|++++.+++....                       
T Consensus      3291 ~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~----------------------- 3347 (3956)
T PRK12467       3291 GAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG----------------------- 3347 (3956)
T ss_pred             HHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc-----------------------
Confidence            998889999999999999874   889999999999999999999999988642100                       


Q ss_pred             HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCCc--
Q 010878          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM--  432 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~~--  432 (498)
                                      .        ..++||.+++||+++++++.+++++.+ ++.+++.||+||++..++.......  
T Consensus      3348 ----------------~--------~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 3403 (3956)
T PRK12467       3348 ----------------A--------DCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAV 3403 (3956)
T ss_pred             ----------------c--------CCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccc
Confidence                            0        113899999999999999999998877 5789999999999887765433221  


Q ss_pred             --cccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCC-------ccccC
Q 010878          433 --CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG-------WFHTG  498 (498)
Q Consensus       433 --~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dG-------w~~TG  498 (498)
                        ....++|+|++|++++|+| ++++.+|  .|+.|||+|+|+++++||+|+|+.|++.| .|+       ||+||
T Consensus      3404 ~~~~~~~iG~p~~~~~~~v~d-~~~~~vp--~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTG 3476 (3956)
T PRK12467       3404 CEAPYAPIGRPVAGRSIYVLD-GQLNPVP--VGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTG 3476 (3956)
T ss_pred             cCCCCCCCccccCCCEEEEEC-CCCCCCC--CCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccc
Confidence              1236899999999999999 7766555  55999999999999999999999999999 655       59998

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=3.2e-47  Score=394.60  Aligned_cols=367  Identities=19%  Similarity=0.228  Sum_probs=276.6

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~  121 (498)
                      +-+.+.|+.+++++|+++|+++.   +  ++.|+++||+||.++++++|+.|.++  ++||+|+++++|+++++++++||
T Consensus         2 ~~~~~~l~~~~~~~~~~~a~~~~---~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~   74 (525)
T PRK05851          2 NELAAALSDAMTASGRDLVVLDR---E--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGA   74 (525)
T ss_pred             chHHHHHHHHhcCCCCceEEeCC---C--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHH
Confidence            34889999999999999999864   3  33578999999999999999999988  79999999999999999999999


Q ss_pred             HHcCCeEeecCCC-------CChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcC
Q 010878          122 NALSLICVPLYDT-------LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (498)
Q Consensus       122 ~~~G~~~~~l~~~-------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  194 (498)
                      +++|+++++++..       ...+++..+++.++++++|++......+.....    .    +.+.+             
T Consensus        75 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~-------------  133 (525)
T PRK05851         75 WLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHD-------------  133 (525)
T ss_pred             HHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----ccccc-------------
Confidence            9999986533211       123455667899999999998776544422110    0    01110             


Q ss_pred             cceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCC-CCcEEEEec
Q 010878          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT-VDDVYLSFL  273 (498)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~-~~d~~l~~~  273 (498)
                           +.......  .........++++++++|||||||.||+|+++|.++++.+......+     ++. .+|++++++
T Consensus       134 -----~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~~  201 (525)
T PRK05851        134 -----LATAAHTN--RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSWL  201 (525)
T ss_pred             -----cccccccc--ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEcC
Confidence                 00000000  00011223578999999999999999999999999999988877666     777 899999999


Q ss_pred             ChHHHHHHHHHHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 010878          274 PLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (498)
Q Consensus       274 pl~h~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (498)
                      |++|.+|+..++.+++.|+++++.+.     ++..+++.++++++|++...|.++..+.+....                
T Consensus       202 pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~----------------  265 (525)
T PRK05851        202 PLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR----------------  265 (525)
T ss_pred             CCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc----------------
Confidence            99999999888889999999998762     578899999999999875544444443221100                


Q ss_pred             HHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHh---cCC---ceEeeeccccCcc
Q 010878          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTETCG  422 (498)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~g~---~l~~~YG~tE~~~  422 (498)
                                          ....++        ++||.+++||+++++++.++|.+.   +|+   .+++.||+||++.
T Consensus       266 --------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~  317 (525)
T PRK05851        266 --------------------VSDVDL--------GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTC  317 (525)
T ss_pred             --------------------ccCCCH--------HHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhce
Confidence                                001112        279999999999999999988764   454   4999999999987


Q ss_pred             cccccCCC--------------CccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhh
Q 010878          423 PTTVCFPD--------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE  488 (498)
Q Consensus       423 ~~~~~~~~--------------~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~  488 (498)
                      .++...+.              .....+++|+|+||++++|+| +++. .+++.|+.|||+|+|++++.|||++++.+  
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~GY~~~~~~~--  393 (525)
T PRK05851        318 AVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGA-AGVAGREIGEIEIRGASMMSGYLGQAPID--  393 (525)
T ss_pred             EEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCC-ccCCCCCeEEEEEecCchhhccccCCccC--
Confidence            66543221              012336899999999999999 6554 33445689999999999999999998643  


Q ss_pred             hccCCccccC
Q 010878          489 SIIDGWFHTG  498 (498)
Q Consensus       489 ~f~dGw~~TG  498 (498)
                        .+|||+||
T Consensus       394 --~~~~~~TG  401 (525)
T PRK05851        394 --PDDWFPTG  401 (525)
T ss_pred             --CCCceecc
Confidence              47999998

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=2.7e-46  Score=391.32  Aligned_cols=398  Identities=23%  Similarity=0.331  Sum_probs=297.8

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~  121 (498)
                      .+....+...+..+|+++|+++.    +     .++||.||.++++++|..|.+.|+++||+|+++++|+++++++++||
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~   90 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHG----S-----VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV   90 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            45888999999999999999863    3     47999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccccc------ccCCccEEEEecCCcHHHHHHHhhcCc
Q 010878          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR------SAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (498)
Q Consensus       122 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~vi~~~~~~~~~~~~~~~~~~  195 (498)
                      +++|++++|+++..+.+++.++++.++++++|+++.......+....      .......++.+++..............
T Consensus        91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (567)
T PLN02479         91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK  170 (567)
T ss_pred             HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence            99999999999999999999999999999999998765543322110      001122344443321100000000011


Q ss_pred             ceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecCh
Q 010878          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (498)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  275 (498)
                      ....+++++...............+++++++|||||||.||+|+++|.++..........+     ++..++++++.+|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~  245 (567)
T PLN02479        171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM  245 (567)
T ss_pred             CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence            2335666654321111111122344677899999999999999999999877665544444     67889999999999


Q ss_pred             HHHHHHHHHH-HHHHcCcEEEEeCCChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          276 AHILDRVIEE-YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       276 ~h~~g~~~~~-~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      +|..++...+ ..+..|.++++...++..+++.++++++|+++++|.++..+++......                    
T Consensus       246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------  305 (567)
T PLN02479        246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET--------------------  305 (567)
T ss_pred             hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc--------------------
Confidence            9999987644 4566777766655699999999999999999999999998865321100                    


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCC-----
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-----  429 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~-----  429 (498)
                                      ..++        +++|.++++|+++++.+.+++++. +.++++.||+||+++.++....     
T Consensus       306 ----------------~~~~--------~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~  360 (567)
T PLN02479        306 ----------------ILPL--------PRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWD  360 (567)
T ss_pred             ----------------cccc--------cceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceecccccc
Confidence                            0001        378999999999999999999875 8999999999999765443210     


Q ss_pred             -----CCccccCccccCcCCce-EEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          430 -----DEMCMVGTAGPVSVYSE-LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       430 -----~~~~~~~s~G~~~~g~~-i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                           .......++|.+.+|++ ++|+|.+++..++.+.++.|||+++|++++.|||++++.+.+.|.+|||+||
T Consensus       361 ~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TG  435 (567)
T PLN02479        361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSG  435 (567)
T ss_pred             ccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecc
Confidence                 00111246788888886 8888833444444433468999999999999999999999999999999998

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-46  Score=385.10  Aligned_cols=357  Identities=23%  Similarity=0.297  Sum_probs=285.4

Q ss_pred             HHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeE
Q 010878           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (498)
Q Consensus        49 ~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  128 (498)
                      +.+++.+||++|+.+.  .++     ..+||.||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         2 ~~~a~~~p~~~a~~~~--~~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   74 (488)
T PRK09088          2 AFHARLQPQRLAAVDL--ALG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY   74 (488)
T ss_pred             chhhhhCCCceEEEec--CCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            4567889999998763  022     589999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccc
Q 010878          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (498)
Q Consensus       129 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (498)
                      +|+++..+.+++.+++++++++++|+++.......           .                     ...++++.....
T Consensus        75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~---------------------~~~~~~~~~~~~  122 (488)
T PRK09088         75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------D---------------------VEDLAAFIASAD  122 (488)
T ss_pred             EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------c---------------------ccchhhhhhhcc
Confidence            99999999999999999999999999865332100           0                     011122211110


Q ss_pred             c-ccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHH-HHH
Q 010878          209 V-NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEY  286 (498)
Q Consensus       209 ~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~  286 (498)
                      . ..........+++++++|||||||.||+|.++|.+++..+..+....     ....+|++++.+|++|.+++.. ++.
T Consensus       123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~  197 (488)
T PRK09088        123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP  197 (488)
T ss_pred             ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence            0 01112233567899999999999999999999999988777665554     6788999999999999999987 667


Q ss_pred             HHHcCcEEEEeCC-ChHhHHHHHh--hhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCC
Q 010878          287 FFRRGASVGYYHG-DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  363 (498)
Q Consensus       287 ~l~~G~~~~~~~~-~~~~~~~~i~--~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (498)
                      ++..|+++++.+. ++..++..+.  ++++|+++.+|++++.+.+...                                
T Consensus       198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~--------------------------------  245 (488)
T PRK09088        198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG--------------------------------  245 (488)
T ss_pred             HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--------------------------------
Confidence            7889999988766 8888888886  5899999999999988754210                                


Q ss_pred             CchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCC--CccccCccccC
Q 010878          364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPV  441 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~--~~~~~~s~G~~  441 (498)
                           .+..++        ++||.+++||++++.+..+.+.+. |+++++.||+||++++.......  ....++++|.|
T Consensus       246 -----~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~  311 (488)
T PRK09088        246 -----FDAAAL--------RHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP  311 (488)
T ss_pred             -----cCcccc--------ccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence                 001111        389999999999999988888765 89999999999998765432221  12344789999


Q ss_pred             cCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       442 ~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      +|+++++|+| +++..++  .|+.|||+|+|++++.||+++++.+++.| .+|||+||
T Consensus       312 ~~~~~~~i~d-~~~~~~~--~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TG  366 (488)
T PRK09088        312 TPTVQTRVVD-DQGNDCP--AGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTG  366 (488)
T ss_pred             CCCcEEEEEC-CCCCCCc--CCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeec
Confidence            9999999999 7766544  45899999999999999999999998888 69999998

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.2e-46  Score=389.33  Aligned_cols=398  Identities=23%  Similarity=0.333  Sum_probs=298.8

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ...+++.+++...++.+|+++|+++.    +     +.+||.||.+++.++|+.|.+.|+++||+|+++++|++++++++
T Consensus        21 ~~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~   91 (563)
T PRK06710         21 YDIQPLHKYVEQMASRYPEKKALHFL----G-----KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGY   91 (563)
T ss_pred             CCcccHHHHHHHHHHHCCCceEEEec----C-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            34578999999999999999999874    3     58999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCc--HHHH--------H
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--AEQK--------E  188 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~--~~~~--------~  188 (498)
                      +||+++|++++|++|..+.+++.++++.++++++++++.....+......  .....++......  ....        .
T Consensus        92 lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (563)
T PRK06710         92 YGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA--TKIEHVIVTRIADFLPFPKNLLYPFVQK  169 (563)
T ss_pred             HHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh--hccceeEEeccccccccccccccchhhc
Confidence            99999999999999999999999999999999999988655443222110  1122222211000  0000        0


Q ss_pred             ----HHh--hcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCC
Q 010878          189 ----MAV--QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK  262 (498)
Q Consensus       189 ----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~  262 (498)
                          ...  ........|+.+.... ...........+++++++|||||||.||+|.++|.+++.+.......+   ...
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~  245 (563)
T PRK06710        170 KQSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL---YNC  245 (563)
T ss_pred             ccccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc---cCC
Confidence                000  0000000122221111 111111112357899999999999999999999999876543322211   011


Q ss_pred             CCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchH
Q 010878          263 MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (498)
Q Consensus       263 ~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~  340 (498)
                      ...++++++++|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+++...         
T Consensus       246 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------  316 (563)
T PRK06710        246 KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL---------  316 (563)
T ss_pred             CCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc---------
Confidence            234568899999999999876 5567899999998766 89999999999999999999999998764210         


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccC
Q 010878          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET  420 (498)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~  420 (498)
                                                  ....++        ++||.+++||+++++++.+++.+.++.++++.||+||+
T Consensus       317 ----------------------------~~~~~~--------~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~  360 (563)
T PRK06710        317 ----------------------------LKEYDI--------SSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTES  360 (563)
T ss_pred             ----------------------------cccCCh--------hhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccC
Confidence                                        011112        27899999999999999999999889999999999999


Q ss_pred             cccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       421 ~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      +.++..........++++|+|+++++++|++ ++++ .+++.|+.|||+++|+.++.||+++++.+...|.+|||+||
T Consensus       361 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TG  436 (563)
T PRK06710        361 SPVTHSNFLWEKRVPGSIGVPWPDTEAMIMS-LETG-EALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTG  436 (563)
T ss_pred             ccccccCcccccccCCccCCCCCCCeEEEEE-CCCC-ccCCCCCceEEEEecCccchhhhCChHHHhhhcccCccccc
Confidence            8765544333333447899999999999998 4333 34555689999999999999999999999988899999998

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.5e-46  Score=429.26  Aligned_cols=369  Identities=21%  Similarity=0.240  Sum_probs=304.6

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..++.++|.+.++.+|+++|+++.   +      ..+||+||.++++++|+.|.+.|+++|++|+++++++++++++++|
T Consensus       457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la  527 (1296)
T PRK10252        457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA  527 (1296)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999864   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++|+++.++.+++.++++.+++++++++......+.+.     ... .++.+.                    
T Consensus       528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~~~~--------------------  581 (1296)
T PRK10252        528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSLCYN--------------------  581 (1296)
T ss_pred             HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eeeecc--------------------
Confidence            999999999999999999999999999999999998765543221     011 111111                    


Q ss_pred             HHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH
Q 010878          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (498)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g  280 (498)
                       +....  ....+.....++++++++|||||||.||||+++|.++++.+.+....+     ++.++|++++..|++|..+
T Consensus       582 -~~~~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~  653 (1296)
T PRK10252        582 -APLAP--QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVS  653 (1296)
T ss_pred             -ccccc--ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhh
Confidence             10000  001111223578999999999999999999999999999998887777     8899999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010878          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (498)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (498)
                      +..++.+|..|+++++.+.    ++..+.+.++++++|++.++|++++.+++.......                     
T Consensus       654 ~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~---------------------  712 (1296)
T PRK10252        654 VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA---------------------  712 (1296)
T ss_pred             HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc---------------------
Confidence            8889999999999999763    889999999999999999999999987653211100                     


Q ss_pred             hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC-----
Q 010878          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~-----  431 (498)
                                    .        ...+++|.+++||+++++++.+.|.+.+++++++.||+||++..++......     
T Consensus       713 --------------~--------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  770 (1296)
T PRK10252        713 --------------R--------QSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAA  770 (1296)
T ss_pred             --------------c--------ccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccc
Confidence                          0        0013899999999999999999999988999999999999987766543321     


Q ss_pred             -ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cC------CccccC
Q 010878          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID------GWFHTG  498 (498)
Q Consensus       432 -~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~d------Gw~~TG  498 (498)
                       .....++|+|++|++++|+| ++++.++  .|+.|||+|+|++++.||+++++.|++.| .+      +||+||
T Consensus       771 ~~~~~~~iG~p~~~~~~~i~d-~~~~~~~--~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TG  842 (1296)
T PRK10252        771 VRGSSVPIGYPVWNTGLRILD-ARMRPVP--PGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTG  842 (1296)
T ss_pred             cCCCCCCcccccCCCEEEEEC-CCCCCCC--CCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecC
Confidence             12236799999999999999 7776555  45899999999999999999999999988 43      399998

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.8e-46  Score=385.47  Aligned_cols=366  Identities=19%  Similarity=0.195  Sum_probs=290.2

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...++.+.|.+.++.+|+++|+++.    +     ..+||.||.++++++|+.|++.|+++||+|+++++|+++++++++
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l  103 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDD----D-----GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF  103 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeC----C-----CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578999999999999999999864    3     379999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++|+++.++.+++.++++.++++.+++++.....+....       ..++.++....               
T Consensus       104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~---------------  161 (516)
T PRK13383        104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA---------------  161 (516)
T ss_pred             HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh---------------
Confidence            99999999999999999999999999999999999987665543211       12222221100               


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHh--hhhhhhhccccCCCCCCcEEEEecChHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV--SGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~--~~~~~~~~~~~~~~~~~d~~l~~~pl~h  277 (498)
                        ...    .  ....+...++.++++|||||||.||+|.++|.......  ......+     ++..+|++++.+|++|
T Consensus       162 --~~~----~--~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~pl~h  228 (516)
T PRK13383        162 --GAE----E--SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-----RLRTGSRISVAMPMFH  228 (516)
T ss_pred             --hhh----c--CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-----ccCCCCeEEEecCCcc
Confidence              000    0  00111234566799999999999999999997432111  1111222     6788999999999999


Q ss_pred             HHHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010878          278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (498)
Q Consensus       278 ~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (498)
                      .+|+...+.++..|+++++... ++..+++.++++++|.+.++|.++..+.+......                      
T Consensus       229 ~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------  286 (516)
T PRK13383        229 GLGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR----------------------  286 (516)
T ss_pred             hhhHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc----------------------
Confidence            9999888888999999987765 99999999999999999999999988865321100                      


Q ss_pred             hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccC
Q 010878          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~  436 (498)
                                   ...+        .+++|.+++||+++++++.+++.+.+|..+++.||+||++..+...........+
T Consensus       287 -------------~~~~--------~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~  345 (516)
T PRK13383        287 -------------ARNP--------LPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPE  345 (516)
T ss_pred             -------------ccCC--------CCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCC
Confidence                         0000        1389999999999999999999999999999999999998766544433333457


Q ss_pred             ccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       437 s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ++|+|+||++++|+| ++++.  ++.|+.|||+++|+.++.||++++.   ..+.||||+||
T Consensus       346 ~~G~~~~~~~~~i~d-~~~~~--~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TG  401 (516)
T PRK13383        346 TVGKPVAGCPVRILD-RNNRP--VGPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTG  401 (516)
T ss_pred             cccCCCCCcEEEEEC-CCCCC--CCCCCceEEEEecCcccccccCCch---hheecCceecc
Confidence            899999999999999 77654  4456899999999999999998754   33478999998

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-45  Score=386.56  Aligned_cols=398  Identities=22%  Similarity=0.295  Sum_probs=303.5

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      .+.++.++|..+++++|+++|+++.    +     ..+||.||.++++++|..|.+ .|+++|++|+++++|++++++++
T Consensus        21 ~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~   91 (560)
T PRK08974         21 RYQSLVDMFEQAVARYADQPAFINM----G-----EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIAL   91 (560)
T ss_pred             CcccHHHHHHHHHHhCCCCceEEEC----C-----ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence            3568999999999999999999864    3     489999999999999999984 79999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHH--HH--------
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KE--------  188 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--~~--------  188 (498)
                      +||+++|++++|++|..+.+++.++++.+++++++++......+.+....  ...+.++.........  ..        
T Consensus        92 lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (560)
T PRK08974         92 FGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVK  169 (560)
T ss_pred             HHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhh
Confidence            99999999999999999999999999999999999987655443332211  1222222211100000  00        


Q ss_pred             -----HHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCC
Q 010878          189 -----MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (498)
Q Consensus       189 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~  263 (498)
                           ..........++.+................++++++++|||||||.||+|.++|.++..++......+..  ...
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~  247 (560)
T PRK08974        170 YIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLH  247 (560)
T ss_pred             hcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccC
Confidence                 0000000111222222221111111223457899999999999999999999999998876554332210  023


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchH
Q 010878          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (498)
Q Consensus       264 ~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~  340 (498)
                      ..++.++..+|++|.+++.. .+.++..|+++++...  ++..+++.++++++|.++++|.+++.+.+...         
T Consensus       248 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---------  318 (560)
T PRK08974        248 PGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEE---------  318 (560)
T ss_pred             CCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcC---------
Confidence            45678889999999999866 6667888988777643  88899999999999999999999998865210         


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccC
Q 010878          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET  420 (498)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~  420 (498)
                                                  ....++        +++|.+++||+++++.+.+++++.+|+++++.||+||+
T Consensus       319 ----------------------------~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~  362 (560)
T PRK08974        319 ----------------------------FQELDF--------SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTEC  362 (560)
T ss_pred             ----------------------------cccCCc--------cceeEEEecCccCCHHHHHHHHHHhCCcEEeeeccccc
Confidence                                        001112        38999999999999999999999889999999999999


Q ss_pred             cccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       421 ~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      +..++.+..+.....+++|.|+|+++++|+| +++..++  .|+.|||+++|+.++.||+++++.+...|.+|||+||
T Consensus       363 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TG  437 (560)
T PRK08974        363 SPLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVP--PGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATG  437 (560)
T ss_pred             CceeeccCCCCcccCCccccCcCCCEEEEEC-CCCCCCC--CCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccC
Confidence            9877766554444457899999999999999 7766544  4589999999999999999999999888899999998

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=5.5e-45  Score=399.98  Aligned_cols=420  Identities=19%  Similarity=0.253  Sum_probs=329.9

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      +...|+.++|.+.++++|+++|+...   . ..+.|+++||+|+.++++++|.+|.++|+++||+|+|+++|+++|+++.
T Consensus       424 ~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~  499 (1452)
T PTZ00297        424 AGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILE  499 (1452)
T ss_pred             ccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            45579999999999999999998632   1 1244578999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHH-HHHHhhcCcce
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ-KEMAVQTGIKP  197 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~  197 (498)
                      +||+++|++++|+++  +.+++.+++++++++++|++.+....+.+...   ..++.+|++++..... ...........
T Consensus       500 lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~~~i~~  574 (1452)
T PTZ00297        500 VACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARDLNITL  574 (1452)
T ss_pred             HHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccccCCcce
Confidence            999999999999976  46799999999999999999888777655432   3688899986421100 00000112346


Q ss_pred             eeHHHHHhccccccc-cCCCCCCCCeEEEEe---ccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEec
Q 010878          198 YSWDEFLHLGKVNEM-EILPPQPFNICTIMY---TSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (498)
Q Consensus       198 ~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~---TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~  273 (498)
                      ++|++++..+..... ......+++++.|+|   ||||||.||||++||+|+++++.......  .......+|++++.+
T Consensus       575 ~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~--~~~~~~~~D~~Ls~L  652 (1452)
T PTZ00297        575 IPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTG--VLPSSFKKHLMVHFT  652 (1452)
T ss_pred             eeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhc--cccCCCCCCEEEEec
Confidence            789999887632111 122346788998885   99999999999999999999998865421  001346789999999


Q ss_pred             ChHHHHHHHHHHHHHHcCcEEEEeCCChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010878          274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (498)
Q Consensus       274 pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (498)
                      |++|+++....+.+++.|+++..  .++..+++.+++++||+++++|++++++.+.+..+....+.+++++++++.+++.
T Consensus       653 PLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~  730 (1452)
T PTZ00297        653 PFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRS  730 (1452)
T ss_pred             hHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            99999997777788999999864  3789999999999999999999999999999888888888899999999988887


Q ss_pred             HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCC--CCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC
Q 010878          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA--PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~--~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~  431 (498)
                      +.+..+   ......++++-|+++++.+|.++|.+++||+  +++..+..      +++++.+||+||+.   +.+.++.
T Consensus       731 ~~~~~g---~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~~~~  798 (1452)
T PTZ00297        731 RLINIH---RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPSEGV  798 (1452)
T ss_pred             HHHhcC---CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecCCCC
Confidence            766554   2345578999999999999999999999984  55544322      67899999999953   3344433


Q ss_pred             ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       432 ~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      .   ...|+|+||+++||.++++.+..    +..|||+++       |+++|+.|++. .+||+..|
T Consensus       799 ~---~~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr-------~~kdpe~T~e~-~~gW~~dG  850 (1452)
T PTZ00297        799 F---CVDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLA-------KKGEPRRTLPI-AAQWKRDR  850 (1452)
T ss_pred             c---ccCCeecCceEEEEcccccccCC----CCCCeEEEE-------ECCChHHHHHh-hCcCccCC
Confidence            2   23499999999999984443322    136999995       45899999874 47998766

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.3e-46  Score=460.27  Aligned_cols=383  Identities=21%  Similarity=0.266  Sum_probs=300.7

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..++.++|+++++.+|+++|+.+.   ++..+.++++||+||.++++++|+.|++.| ++||+|+|+++|++++++++||
T Consensus         8 ~~tl~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~lTy~el~~~~~~lA~~L~~~~-~~gd~V~i~~~~s~~~~~~~la   83 (4334)
T PRK05691          8 PLTLVQALQRRAAQTPDRLALRFL---ADDPGEGVVLSYRDLDLRARTIAAALQARA-SFGDRAVLLFPSGPDYVAAFFG   83 (4334)
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEe---cCCCCcceEeeHHHHHHHHHHHHHHHHhcC-CCCCEEEEEcCCCHHHHHHHHH
Confidence            479999999999999999999886   555555689999999999999999998765 9999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCCh-----hHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCc
Q 010878          121 CNALSLICVPLYDTLGP-----GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  195 (498)
                      |+++|++++|++|..+.     +++.++++.++++++|++......+.+...........++.++....           
T Consensus        84 ~l~aG~~~vp~~p~~~~~~~~~~rl~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  152 (4334)
T PRK05691         84 CLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDP-----------  152 (4334)
T ss_pred             HHHhCceEeccCCcccccccHHHHHHHHHHhCCCCEEEECHHHHHHHHhhhhcccccCceEEEcccccc-----------
Confidence            99999999999997654     45999999999999999987665554332111112233444332110           


Q ss_pred             ceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCC--CCCcEEEEec
Q 010878          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSFL  273 (498)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~~  273 (498)
                                .. ..........++++++++|||||||.||||+++|+|+++++......+     .+  +++|++++++
T Consensus       153 ----------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKGV~lsH~~l~~~~~~~~~~~-----~~~~~~~d~~l~~l  216 (4334)
T PRK05691        153 ----------AL-AEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGF-----GIDLNPDDVIVSWL  216 (4334)
T ss_pred             ----------cc-cccccCCCCCcCCeEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHh-----CCCCCCCceEEEec
Confidence                      00 001112234678999999999999999999999999999887766554     44  8899999999


Q ss_pred             ChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHH
Q 010878          274 PLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (498)
Q Consensus       274 pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (498)
                      |++|.+|+.. ++.+++.|+++++++.     +|..+++.++++++|+...+|..+..+.+...                
T Consensus       217 p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~----------------  280 (4334)
T PRK05691        217 PLYHDMGLIGGLLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYGGTISGGPDFAYRLCSERVS----------------  280 (4334)
T ss_pred             cchhhhHHHHHHHHHHHCCCEEEEeCcHHHhhCHHHHHHHHHHcCCEEecCCchHHHHHHHhcC----------------
Confidence            9999999876 7778999999998764     78999999999999987776666655432111                


Q ss_pred             HHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc---C---CceEeeeccccCc
Q 010878          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---C---AFLVQGYGLTETC  421 (498)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---g---~~l~~~YG~tE~~  421 (498)
                                        ....+.+++        ++||.+++||+++++++.++|.+.+   |   ..++++||+||++
T Consensus       281 ------------------~~~~~~~~l--------~~lr~~~~gge~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~  334 (4334)
T PRK05691        281 ------------------ESALERLDL--------SRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFFASYGLAEAT  334 (4334)
T ss_pred             ------------------HHHhccccc--------ccceEEEECcccCCHHHHHHHHHHhhhcCCCccccccCcchhhhe
Confidence                              111222333        4899999999999999999998876   2   2599999999998


Q ss_pred             ccccccCCC---------------------CccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCccccc
Q 010878          422 GPTTVCFPD---------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  480 (498)
Q Consensus       422 ~~~~~~~~~---------------------~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~  480 (498)
                      .+++.....                     ......++|+|+||++++|+|.+++.  +++.|+.|||||+||++++|||
T Consensus       335 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~Ivd~~~~~--~~~~g~~GEl~v~Gp~v~~GY~  412 (4334)
T PRK05691        335 LFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVDPQSLE--VLGDNRVGEIWASGPSIAHGYW  412 (4334)
T ss_pred             eeeecccCCCCCceEeecHhHHhcCCccCCCCCceeccCCccCCCEEEEEcCCCCc--CCCCCCeEEEEecCCccchhhc
Confidence            877643221                     01122589999999999999933444  4455689999999999999999


Q ss_pred             CCchhhhhhc--cCC--ccccC
Q 010878          481 KNPDLTRESI--IDG--WFHTG  498 (498)
Q Consensus       481 ~~~~~~~~~f--~dG--w~~TG  498 (498)
                      ++|+.|++.|  .+|  |||||
T Consensus       413 ~~~~~T~~~f~~~~g~~w~rTG  434 (4334)
T PRK05691        413 RNPEASAKTFVEHDGRTWLRTG  434 (4334)
T ss_pred             CChhhhHHHhhcCCCCceeecC
Confidence            9999999998  456  99998

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-45  Score=384.55  Aligned_cols=368  Identities=20%  Similarity=0.190  Sum_probs=287.8

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCchhHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv-~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      .++.++|..++  .|+++|+++.    +     ..+||.||.++++++|..|.+.|+ ++|++|+++++|+++++++++|
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~----~-----~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA   71 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG----D-----RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA   71 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence            56888888764  7999999864    3     489999999999999999999999 8999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++|++|.++.+++.++++.++++++|+++.....+.+..   .+.. .++.++..                .+
T Consensus        72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~-~~i~~~~~----------------~~  131 (540)
T PRK13388         72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGV-RVLDVDTP----------------AY  131 (540)
T ss_pred             HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCc-eEEEccch----------------hh
Confidence            9999999999999999999999999999999999987665543321   1222 23333221                12


Q ss_pred             HHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH
Q 010878          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (498)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g  280 (498)
                      .++...... ..+.....++++++++|||||||.||+|.++|.++..........+     ++..+|+++..+|++|.++
T Consensus       132 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  205 (540)
T PRK13388        132 AELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNA  205 (540)
T ss_pred             hhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcc
Confidence            233221111 1111234678999999999999999999999999998887776666     7889999999999999999


Q ss_pred             HHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 010878          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (498)
Q Consensus       281 ~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (498)
                      +.. ++.++..|+++++.+. ++..+++.++++++|++..+|..+..+++...                           
T Consensus       206 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~---------------------------  258 (540)
T PRK13388        206 VMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPE---------------------------  258 (540)
T ss_pred             hHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCC---------------------------
Confidence            876 4457999999988775 89999999999999999999999887754210                           


Q ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCcc
Q 010878          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~  438 (498)
                             ..  ..         ...+++.+ + |++++++..+.+.+.+++++++.||+||++.++....   ....+++
T Consensus       259 -------~~--~~---------~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~v  315 (540)
T PRK13388        259 -------RP--DD---------ADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP---GTPPGSI  315 (540)
T ss_pred             -------Cc--cc---------cccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC---CCCCCCC
Confidence                   00  00         00256643 3 6677888888888888999999999999987665432   1234789


Q ss_pred             ccCcCCceEE-----------eeecCCCCCCCCCCCCCCeEEEe-cCCCcccccCCchhhhhhccCCccccC
Q 010878          439 GPVSVYSELR-----------LEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       439 G~~~~g~~i~-----------ivd~~~~~~~~~~~~~~Gei~v~-g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      |+|++|+++.           ++| +++.... ..++.|||+++ |++++.||+++++.+.+.|.+|||+||
T Consensus       316 G~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~-~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TG  385 (540)
T PRK13388        316 GRGAPGVAIYNPETLTECAVARFD-AHGALLN-ADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSG  385 (540)
T ss_pred             CCCCCCcEEEcCCCCccccceecc-Ccccccc-CCCcceEEEEecCCcccccccCChHHHHHHhhcCceecc
Confidence            9999997653           233 2332221 23568999998 999999999999999999999999998

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=7.3e-46  Score=383.25  Aligned_cols=366  Identities=16%  Similarity=0.210  Sum_probs=296.1

Q ss_pred             cHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 010878           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (498)
Q Consensus        43 tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~  122 (498)
                      ++.+.|.+.++.+|+++|+...    +     ..+||+||.+++.++|..|.+.|+++|++|+++++|+.+++++++||+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~   71 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ----G-----QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI   71 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence            5788999999999999998764    3     489999999999999999999999999999999999999999999999


Q ss_pred             HcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHH
Q 010878          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (498)
Q Consensus       123 ~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~  202 (498)
                      ++|++++|+++.++.+++..+++..++++++++.........        .. ++.+..                  .++
T Consensus        72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------~~-~~~~~~------------------~~~  124 (502)
T TIGR01734        72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------TQ-IITLSA------------------LEQ  124 (502)
T ss_pred             HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--------Cc-eEEchH------------------hhh
Confidence            999999999999999999999999999999998765332211        11 222211                  111


Q ss_pred             HHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHH
Q 010878          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (498)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~  282 (498)
                      +.... ..........+++.++++|||||||.||+|.++|.++...+.+....+     ....++++++..|++|..++.
T Consensus       125 ~~~~~-~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~  198 (502)
T TIGR01734       125 AETSG-GPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVM  198 (502)
T ss_pred             hhhhc-CCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHH
Confidence            11111 001111234578899999999999999999999999999888766655     778899999999999999998


Q ss_pred             HHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 010878          283 IEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (498)
Q Consensus       283 ~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (498)
                      .++.++..|+++++.+.    ++..+++.++++++|.+.++|.+++.++.....                          
T Consensus       199 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~--------------------------  252 (502)
T TIGR01734       199 DLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF--------------------------  252 (502)
T ss_pred             HHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc--------------------------
Confidence            88899999999998764    789999999999999999999998876542110                          


Q ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCC----Ccc
Q 010878          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----EMC  433 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~----~~~  433 (498)
                                 ...++        ++++.++++|+++++++.+++.+.+ ++.+++.||+||+++.+......    ...
T Consensus       253 -----------~~~~~--------~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  313 (502)
T TIGR01734       253 -----------NQENY--------PHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY  313 (502)
T ss_pred             -----------ccccC--------CcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccC
Confidence                       00011        3899999999999999999999888 78999999999997654432211    122


Q ss_pred             ccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc--cC--CccccC
Q 010878          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--ID--GWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f--~d--Gw~~TG  498 (498)
                      ...++|.+.+|++++|+| +++..++  .|+.|||+|+|+.++.||+++++.+.+.|  .+  |||+||
T Consensus       314 ~~~~vg~~~~~~~~~i~~-~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TG  379 (502)
T TIGR01734       314 PRLPIGFAKPDMNLFIMD-EEGEPLP--EGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTG  379 (502)
T ss_pred             CccccccccCCCEEEEEC-CCCCCCC--CCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECC
Confidence            335799999999999999 7766554  45899999999999999999999998877  23  599998

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-45  Score=385.65  Aligned_cols=398  Identities=21%  Similarity=0.253  Sum_probs=301.9

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ....++.++|+++++.+|+++|+.+.    +     +.+||.||.+++.++|..|.+.|+++|++|+++++|++++++++
T Consensus        30 ~~~~~l~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~  100 (567)
T PRK06178         30 HGERPLTEYLRAWARERPQRPAIIFY----G-----HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVF  100 (567)
T ss_pred             cCcccHHHHHHHHHHHCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHH
Confidence            34478999999999999999999875    3     48999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHH--Hhh----
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM--AVQ----  192 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~--~~~----  192 (498)
                      +||+++|++++|++|..+..++.+++++++++++++++...+.+.+.....  ..+.++............  ...    
T Consensus       101 lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~  178 (567)
T PRK06178        101 FGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLPDSLR  178 (567)
T ss_pred             HHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEeccccccccccccccccccc
Confidence            999999999999999999999999999999999999988776654433221  233343332111000000  000    


Q ss_pred             -cCcceeeHHHHHhcccc--ccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEE
Q 010878          193 -TGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (498)
Q Consensus       193 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (498)
                       .......+.++......  .........++++++++|||||||.||+|+++|.+++..+.......    .....+|++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~d~~  254 (567)
T PRK06178        179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGEDSVF  254 (567)
T ss_pred             cccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCCcEE
Confidence             00001112222221111  11112234578999999999999999999999999987765543321    257889999


Q ss_pred             EEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHH
Q 010878          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (498)
Q Consensus       270 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (498)
                      ++.+|++|.+|+.. ++.+++.|+++++.+. ++..++..++++++|.+.++|..+..+.+...                
T Consensus       255 l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~----------------  318 (567)
T PRK06178        255 LSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR----------------  318 (567)
T ss_pred             EEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC----------------
Confidence            99999999999875 7778999999999886 99999999999999999999999887754210                


Q ss_pred             HHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEE--EcCCCCCHHHHHHHHHhcCCceEe-eeccccCcccc
Q 010878          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI--SGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTETCGPT  424 (498)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~--~~G~~l~~~~~~~~~~~~g~~l~~-~YG~tE~~~~~  424 (498)
                                           ....++        ++++.+.  ++++.+++++.+.+++.+|..++. .||+||++..+
T Consensus       319 ---------------------~~~~~l--------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~  369 (567)
T PRK06178        319 ---------------------FAEYDL--------SSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCD  369 (567)
T ss_pred             ---------------------CCCCCc--------chheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccc
Confidence                                 001112        2566654  445899999999999988877665 79999998765


Q ss_pred             cccCC---CC---ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          425 TVCFP---DE---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       425 ~~~~~---~~---~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      .....   ..   ...++++|+|+||++++|+|.++++.  ++.|+.|||+|+|++++.||+++++.+...|.||||+||
T Consensus       370 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~--~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TG  447 (567)
T PRK06178        370 TFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGEL--LPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTG  447 (567)
T ss_pred             eeccccccCccccccCCcccccccCCcEEEEEcCCCCCc--CCCCCceEEEEECCcccccccCChhhhhhcccCCceeec
Confidence            54321   11   12346799999999999999333443  445689999999999999999999999888899999998

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3e-45  Score=379.86  Aligned_cols=368  Identities=21%  Similarity=0.270  Sum_probs=289.8

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ...++.++|.+.+.  ++++++++.    +     +++||.||.++++++|.+|+++ |++++++|+++++|++++++++
T Consensus         3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~   71 (529)
T PRK07867          3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL   71 (529)
T ss_pred             ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence            34678899988775  788898764    3     5899999999999999999997 8999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      +||+++|++++|+++..+.+++.+++++++++++|+++.....+.+..    ... .++.++.                .
T Consensus        72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~  130 (529)
T PRK07867         72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------P  130 (529)
T ss_pred             HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------c
Confidence            999999999999999999999999999999999999987665432211    111 2222221                1


Q ss_pred             eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                      .+++++..............++++++++|||||||.||+|+++|.++......+...+     ++..+|++++.+|++|.
T Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~  205 (529)
T PRK07867        131 AWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHS  205 (529)
T ss_pred             cHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHH
Confidence            2444333221111222345678999999999999999999999999998888776666     78889999999999999


Q ss_pred             HHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010878          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (498)
Q Consensus       279 ~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (498)
                      +++.. ++.++..|+++++.+. ++..+++.++++++|++.++|..+..++.....                        
T Consensus       206 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~------------------------  261 (529)
T PRK07867        206 NAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPER------------------------  261 (529)
T ss_pred             HHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc------------------------
Confidence            99876 5567999999988765 899999999999999999999999877542110                        


Q ss_pred             hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccC
Q 010878          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~  436 (498)
                                .  +.         ..+++|. ++||+.+++.. +++.+.+|+++++.||+||++..+.....   ...+
T Consensus       262 ----------~--~~---------~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~  315 (529)
T PRK07867        262 ----------P--DD---------ADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPPG  315 (529)
T ss_pred             ----------c--cc---------cccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCCC
Confidence                      0  00         0026784 56888887765 56666789999999999999866543321   2347


Q ss_pred             ccccCcCCceEEeeecCCCCCCCCCCCC------------CCeEEE-ecCCCcccccCCchhhhhhccCCccccC
Q 010878          437 TAGPVSVYSELRLEEVPEMGYSPLDDPP------------CGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       437 s~G~~~~g~~i~ivd~~~~~~~~~~~~~------------~Gei~v-~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ++|.|+++  ++|++.+.+..++.  ++            .|||++ +|++++.||+++++.+.+.|.+|||+||
T Consensus       316 ~~g~~~~~--~~i~~~~~~~~~~~--g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TG  386 (529)
T PRK07867        316 ALGPLPPG--VAIVDPDTGTECPP--AEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSG  386 (529)
T ss_pred             CcCCCCCC--EEEEECCCCCCCCC--CccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeec
Confidence            89999999  67777334444433  45            899999 9999999999999999998999999998

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.2e-45  Score=456.98  Aligned_cols=370  Identities=19%  Similarity=0.228  Sum_probs=304.4

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...++.++|.+.++.+|+++|+++.   +      ..+||+||.++++++|+.|++.|+++|++|+++++|+++++++++
T Consensus      2001 ~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~l 2071 (5163)
T PRK12316       2001 RGPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALL 2071 (5163)
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3458999999999999999999875   3      489999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++||+|.++.+++.++++++++++++++......+...     ... ..+.++..                 
T Consensus      2072 Ail~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~-~~~~~~~~----------------- 2128 (5163)
T PRK12316       2072 AVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGV-ARLPLDRD----------------- 2128 (5163)
T ss_pred             HHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----ccc-ceEeccch-----------------
Confidence            9999999999999999999999999999999999988765433110     111 11112110                 


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  279 (498)
                       ..+...  ....+.....+++++|++|||||||.||||+++|.++++.+......+     +++++|+++.++|++|..
T Consensus      2129 -~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 2200 (5163)
T PRK12316       2129 -AEWADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFDG 2200 (5163)
T ss_pred             -hhhhcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHHH
Confidence             000000  111122345689999999999999999999999999999998887776     889999999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEeCC---ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010878          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (498)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (498)
                      ++..++.+|+.|+++++.+.   ++..+++.++++++|+++++|++++.+.+.....                       
T Consensus      2201 ~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------------------- 2257 (5163)
T PRK12316       2201 AHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD----------------------- 2257 (5163)
T ss_pred             HHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc-----------------------
Confidence            98889999999999977653   7899999999999999999999999886532110                       


Q ss_pred             hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC-cc-
Q 010878          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MC-  433 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~-~~-  433 (498)
                                             ....+||.+++||+++++++.++|.+.+ +..+++.||+||++..++...... .. 
T Consensus      2258 -----------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 2314 (5163)
T PRK12316       2258 -----------------------GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC 2314 (5163)
T ss_pred             -----------------------cCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeeccccccc
Confidence                                   0012799999999999999999998876 678999999999987766543222 11 


Q ss_pred             --ccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cC-------CccccC
Q 010878          434 --MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID-------GWFHTG  498 (498)
Q Consensus       434 --~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~d-------Gw~~TG  498 (498)
                        ...++|+|++|++++|+| ++++.+|  .|+.|||+|+|+++++||+++|+.|++.| .+       +||+||
T Consensus      2315 ~~~~~~iG~p~~~~~~~i~d-~~~~~vp--~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTG 2386 (5163)
T PRK12316       2315 GAAYVPIGRALGNRRAYILD-ADLNLLA--PGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTG 2386 (5163)
T ss_pred             CCCcCCcccccCCCEEEEEC-CCCCCCC--CCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecc
Confidence              125799999999999999 7766554  55999999999999999999999999998 32       499998

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=6.7e-45  Score=376.20  Aligned_cols=366  Identities=17%  Similarity=0.188  Sum_probs=297.7

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ++++.++|.++++.+|+++++...    +     .++||.||.++++++|..|.+.|+++|++|+++++|+.+++++++|
T Consensus         1 ~~~~~~~l~~~a~~~p~~~~~~~~----~-----~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a   71 (503)
T PRK04813          1 IMDIIETIEEFAQTQPDFPAYDYL----G-----EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLG   71 (503)
T ss_pred             CchHHHHHHHHHHhCCCceEEEeC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            467899999999999999998764    3     4899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++|+++.++.+++..+++..++++++++.......        ... .                     ...+
T Consensus        72 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~---------------------~~~~  121 (503)
T PRK04813         72 AVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGI-P---------------------VITL  121 (503)
T ss_pred             HHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCC-c---------------------EEeh
Confidence            999999999999999999999999999999999987641100        000 1                     1122


Q ss_pred             HHHHhcc--ccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       201 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                      +++....  ...........++++++++|||||||.||+|.++|.++..........+     .+..++++++..|++|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~  196 (503)
T PRK04813        122 DELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFD  196 (503)
T ss_pred             HHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchh
Confidence            2221110  0111112234568899999999999999999999999998888766655     78889999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      .++..++.++..|+++++.+.    ++..+++.++++++|++..+|.+++.++.....                      
T Consensus       197 ~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~----------------------  254 (503)
T PRK04813        197 LSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSF----------------------  254 (503)
T ss_pred             HhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhcc----------------------
Confidence            998888889999999998774    789999999999999999999999876532110                      


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC--
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--  431 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~--  431 (498)
                                     ...+        .+++|.++++|+++++.+.+++.+.+ ++.+++.||+||++..++......  
T Consensus       255 ---------------~~~~--------~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~  311 (503)
T PRK04813        255 ---------------NEEH--------LPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEM  311 (503)
T ss_pred             ---------------Cccc--------CCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccc
Confidence                           0001        13899999999999999999999988 789999999999976554332211  


Q ss_pred             --ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc--cCC--ccccC
Q 010878          432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTG  498 (498)
Q Consensus       432 --~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f--~dG--w~~TG  498 (498)
                        .....++|++.++++++|+| +++..++  .|+.|||+|+|++++.||+++++.+.+.|  .+|  ||+||
T Consensus       312 ~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tG  381 (503)
T PRK04813        312 LDQYKRLPIGYAKPDSPLLIID-EEGTKLP--DGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTG  381 (503)
T ss_pred             cccCCCCcccccCCCCEEEEEC-CCCCCCC--CCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECC
Confidence              12335799999999999999 7776554  45899999999999999999999998887  245  99998

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-45  Score=386.17  Aligned_cols=386  Identities=21%  Similarity=0.256  Sum_probs=295.3

Q ss_pred             CCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 010878           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (498)
Q Consensus        32 ~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~  111 (498)
                      ..+|...+++.++.++|+..++.+|+..++ +     ..++.++.+||.||..++.++|.+|+++|+++||+|+++++|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~   84 (579)
T PRK09192         11 SSLPRRYADFPTLVEALDYAALGEAGMNFY-D-----RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETD   84 (579)
T ss_pred             ccccccccchhhHHHHHHHhhccCCceEEE-e-----cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence            345666678899999999999998865543 2     2223347899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHcCCeEeecCCCCC-------hhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcH
Q 010878          112 PQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA  184 (498)
Q Consensus       112 ~~~~~~~lA~~~~G~~~~~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~  184 (498)
                      ++++++++||+++|++++|+++...       .+++.++++.++++++|+++.....+.+....    ...++       
T Consensus        85 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~----~~~~~-------  153 (579)
T PRK09192         85 GDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHG----NPLLH-------  153 (579)
T ss_pred             hhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcc----ccccc-------
Confidence            9999999999999999999986443       58999999999999999998766554332211    11111       


Q ss_pred             HHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhh-hhccccCCC
Q 010878          185 EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKM  263 (498)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~-~~~~~~~~~  263 (498)
                                  ..+++++.... ..........++++++++|||||||.||+|.++|.+++..+..... .+     ++
T Consensus       154 ------------~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~  215 (579)
T PRK09192        154 ------------VLSHAWFKALP-EADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KV  215 (579)
T ss_pred             ------------eeehhhhcccC-CCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cC
Confidence                        11233332221 1111222345789999999999999999999999999998877655 44     78


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhh
Q 010878          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (498)
Q Consensus       264 ~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~  337 (498)
                      ..+|++++++|++|.+|+.. ++.++..|+++++.+.     ++..+++.+.++++++++..|..+..+.....      
T Consensus       216 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~------  289 (579)
T PRK09192        216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVN------  289 (579)
T ss_pred             CCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhc------
Confidence            88999999999999999986 5567889999877652     68899999999999987776555555432110      


Q ss_pred             chHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC------Cce
Q 010878          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFL  411 (498)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g------~~l  411 (498)
                                                  ......++++        ++|.+++||+++++++.+.+.+.++      ..+
T Consensus       290 ----------------------------~~~~~~~~l~--------~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~  333 (579)
T PRK09192        290 ----------------------------SKDLAELDLS--------CWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAF  333 (579)
T ss_pred             ----------------------------cccccccchh--------hhheeEecCccCCHHHHHHHHHHHHhcCCChhhc
Confidence                                        0001112333        8999999999999999999988763      248


Q ss_pred             EeeeccccCcccccccCCCCc---------------------------cccCccccCcCCceEEeeecCCCCCCCCCCCC
Q 010878          412 VQGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPP  464 (498)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~~---------------------------~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~  464 (498)
                      ++.||+||+++.++.......                           ....++|+|+||++++|+| +++..++  .++
T Consensus       334 ~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~--~g~  410 (579)
T PRK09192        334 MPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLP--ERV  410 (579)
T ss_pred             ccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCC--CCC
Confidence            999999999876654432110                           1125799999999999999 7766554  458


Q ss_pred             CCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          465 CGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       465 ~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      .|||+++|++++.||+++ +.+.+.| .||||+||
T Consensus       411 ~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TG  444 (579)
T PRK09192        411 VGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTG  444 (579)
T ss_pred             EEEEEecCCchhhhhcCC-ccccccccCCceeecc
Confidence            999999999999999999 6666666 89999998

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.4e-45  Score=447.63  Aligned_cols=371  Identities=20%  Similarity=0.204  Sum_probs=305.6

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...++.++|.+.++++|+++|+++.   +      ..+||+||.++++++|+.|++.|+++|++|++++++++++++++|
T Consensus      1572 ~~~~~~~~~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~l 1642 (3956)
T PRK12467       1572 LARLVHQLIEDQAAATPEAVALVFG---E------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLL 1642 (3956)
T ss_pred             ccccHHHHHHHHHHhCCCCeEEEeC---C------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHH
Confidence            3468999999999999999999875   3      489999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++|++|.++.+++.++++++++++++++......+...     ... .++.++...                
T Consensus      1643 avlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~---------------- 1700 (3956)
T PRK12467       1643 AILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP-----DGL-RSLVLDQED---------------- 1700 (3956)
T ss_pred             HhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc-----cCC-cEEEecccc----------------
Confidence            9999999999999999999999999999999999987655433110     111 223333211                


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  279 (498)
                        ++.... ....+.....+++++|++|||||||.||||+++|.++++.+.+....+     ++..+|++++..|++|..
T Consensus      1701 --~~~~~~-~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 1772 (3956)
T PRK12467       1701 --DWLEGY-SDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-----QLSAADVVLQFTSFAFDV 1772 (3956)
T ss_pred             --chhccC-CCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-----CCCcccEEEEecCccHHH
Confidence              011111 111122334678999999999999999999999999999998877766     888999999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010878          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (498)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (498)
                      ++..++.+|..|+++++.+.    ++..+++.|+++++|++.++|++++.+++.... .                     
T Consensus      1773 ~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-~--------------------- 1830 (3956)
T PRK12467       1773 SVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQ-V--------------------- 1830 (3956)
T ss_pred             HHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhccc-c---------------------
Confidence            99889999999999999763    789999999999999999999999988652100 0                     


Q ss_pred             HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCC----
Q 010878          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----  430 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~----  430 (498)
                                      .+        .++||.+++||+++++++.+.|.+.+ +..++|.||+||++..++.....    
T Consensus      1831 ----------------~~--------~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~ 1886 (3956)
T PRK12467       1831 ----------------EH--------PLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDL 1886 (3956)
T ss_pred             ----------------cc--------CCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEecccccc
Confidence                            00        13899999999999999999998877 57899999999998776654322    


Q ss_pred             CccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-c-------CCccccC
Q 010878          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-------DGWFHTG  498 (498)
Q Consensus       431 ~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~-------dGw~~TG  498 (498)
                      ......++|+|++|++++|+| ++++.+|  .|..|||+|+|+++++||+++|+.|++.| .       ++||+||
T Consensus      1887 ~~~~~~~iG~p~~~~~~~vld-~~~~~vp--~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTG 1959 (3956)
T PRK12467       1887 EGRDSVPIGQPIANLSTYILD-ASLNPVP--IGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTG 1959 (3956)
T ss_pred             ccCCCCCcccccCCCEEEEEC-CCCCCCC--CCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceecc
Confidence            112236899999999999999 7666554  45899999999999999999999999988 2       2499998

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.1e-45  Score=452.31  Aligned_cols=371  Identities=20%  Similarity=0.246  Sum_probs=306.5

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      +...++.++|.+.++++|+++|+++.   +      .++||+||.++++++|+.|++.|+++|++|+|+++|++++++++
T Consensus      4548 ~~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~ 4618 (5163)
T PRK12316       4548 PATRCVHQLVAERARMTPDAVAVVFD---E------EKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGL 4618 (5163)
T ss_pred             CccccHHHHHHHHHHhCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34578999999999999999999874   3      48999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      |||+++|++++|++|.++.+++.+++++++++++|++......+...     ... .++.++...               
T Consensus      4619 lavl~aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~-~~~~~~~~~--------------- 4677 (5163)
T PRK12316       4619 LAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLPIP-----DGL-ASLALDRDE--------------- 4677 (5163)
T ss_pred             HHHHHhCcEEecCCCCChHHHHHHHHHhcCCCEEEechhhhhhcccc-----cCc-ceEeecchh---------------
Confidence            99999999999999999999999999999999999987655443110     111 122222110               


Q ss_pred             eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                         ++ ... ....+.....++++++++|||||||.||||+++|+++++.+.+....+     +++++|++++.+|++|.
T Consensus      4678 ---~~-~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 4747 (5163)
T PRK12316       4678 ---DW-EGF-PAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERY-----ELTPDDRVLQFMSFSFD 4747 (5163)
T ss_pred             ---hc-ccC-CccCCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhc-----CCCcCCeEEEecCcchh
Confidence               00 000 111122345678999999999999999999999999999998887766     88999999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEeCC---ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010878          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (498)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (498)
                      .++..++.+|..|+++++++.   ++..+++.|+++++|+++++|++++.+.+......                     
T Consensus      4748 ~~~~~~~~~L~~G~~lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~--------------------- 4806 (5163)
T PRK12316       4748 GSHEGLYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG--------------------- 4806 (5163)
T ss_pred             hHHHHHHHHHhCCCEEEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhcccc---------------------
Confidence            999889999999999999874   78999999999999999999999998865321100                     


Q ss_pred             HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC---
Q 010878          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---  431 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~---  431 (498)
                                               ..++||.+++||+++++++.+.+.+.+ ++++++.||+||++..++......   
T Consensus      4807 -------------------------~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 4861 (5163)
T PRK12316       4807 -------------------------EPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDA 4861 (5163)
T ss_pred             -------------------------CCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEcccccc
Confidence                                     014899999999999999998877665 689999999999998776554322   


Q ss_pred             -ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cC-------CccccC
Q 010878          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID-------GWFHTG  498 (498)
Q Consensus       432 -~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~d-------Gw~~TG  498 (498)
                       .....++|+|++|++++|+| +++..+|  .|+.|||+|+|+++++||+++++.|++.| .+       +||+||
T Consensus      4862 ~~~~~~~iG~p~~~~~~~i~d-~~~~~~p--~g~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTG 4934 (5163)
T PRK12316       4862 CGAAYMPIGTPLGNRSGYVLD-GQLNPLP--VGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTG 4934 (5163)
T ss_pred             cCCCCCcccccccCCEEEEEC-CCCCcCC--CCCCceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecC
Confidence             22346899999999999999 7766554  45899999999999999999999999998 32       599998

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=3e-45  Score=450.43  Aligned_cols=373  Identities=17%  Similarity=0.159  Sum_probs=306.9

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...++.++|.+.++++|+++|+++.   ++      .+||+||.++++++|+.|.+.|+++|++|+|+++++++++++++
T Consensus      3718 ~~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~l 3788 (4334)
T PRK05691       3718 LEQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIV 3788 (4334)
T ss_pred             cccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4568999999999999999999976   43      79999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccccccc-CCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      |++++|++++||+|.++.+++.++++++++++++++............... .....++..++                 
T Consensus      3789 avlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 3851 (4334)
T PRK05691       3789 GSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE----------------- 3851 (4334)
T ss_pred             HHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc-----------------
Confidence            999999999999999999999999999999999999875543222211110 01111111111                 


Q ss_pred             eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                          ..........+.....+++++|++|||||||.||||+++|+++++.+.+....+     +++++|+++...++.+.
T Consensus      3852 ----~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~fd 3922 (4334)
T PRK05691       3852 ----VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSFD 3922 (4334)
T ss_pred             ----cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCchh
Confidence                110010111122334678999999999999999999999999999998887777     89999999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      .++..++.++..|+++++++.    ++..+.+.++++++|++..+|+++..+++....                      
T Consensus      3923 ~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~---------------------- 3980 (4334)
T PRK05691       3923 ISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ---------------------- 3980 (4334)
T ss_pred             HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc----------------------
Confidence            999999999999999998764    789999999999999999999999887642100                      


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC--
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--  431 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~--  431 (498)
                                                ..++||.+++||+++++++.++|.+.+ +++++|.||+||++..++......  
T Consensus      3981 --------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~ 4034 (4334)
T PRK05691       3981 --------------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAS 4034 (4334)
T ss_pred             --------------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEccccc
Confidence                                      013899999999999999999998765 789999999999998776554322  


Q ss_pred             -ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-c-------CCccccC
Q 010878          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-------DGWFHTG  498 (498)
Q Consensus       432 -~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~-------dGw~~TG  498 (498)
                       .....++|+|++|+++.|+| +.++.+|.|  ..|||+|+|+++++||+|+|+.|+++| .       ++||+||
T Consensus      4035 ~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g--~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTG 4107 (4334)
T PRK05691       4035 TRGSYLPIGSPTDNNRLYLLD-EALELVPLG--AVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTG 4107 (4334)
T ss_pred             ccCCcCCCCCccCCCEEEEEC-CCCCCCCCC--CceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccC
Confidence             11224699999999999999 776666554  899999999999999999999999998 3       3699998

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-44  Score=373.87  Aligned_cols=392  Identities=25%  Similarity=0.299  Sum_probs=290.4

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~  121 (498)
                      .+..+.|++.++.+|+++|+++.    +     ..+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~   88 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHG----D-----RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV   88 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC----C-----eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            57889999999999999999864    3     48999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHH
Q 010878          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (498)
Q Consensus       122 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  201 (498)
                      +++|++++|+++..+.+++..+++.++++.++++.+....+.+... ..+.. ..+.+.......   .........+++
T Consensus        89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~  163 (545)
T PRK08162         89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALA-LLPGP-KPLVIDVDDPEY---PGGRFIGALDYE  163 (545)
T ss_pred             HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHh-hCCCC-ceEEEecCcccc---ccCCCcccccHH
Confidence            9999999999999999999999999999999999987665543322 11121 122222111100   000011233566


Q ss_pred             HHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHH
Q 010878          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (498)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~  281 (498)
                      ++............+...+++++++|||||||.||+|+++|.++..........+     .+..++++++.+|++|.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~~  238 (545)
T PRK08162        164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNGW  238 (545)
T ss_pred             HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhhH
Confidence            6654321111111223446789999999999999999999998877665544433     67788999999999999998


Q ss_pred             HHHHHH-HHcCcEEEEeCCChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccc
Q 010878          282 VIEEYF-FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (498)
Q Consensus       282 ~~~~~~-l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (498)
                      ...+.. +..|.++++...++..+++.++++++|++.++|.++..+++......                          
T Consensus       239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------  292 (545)
T PRK08162        239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWR--------------------------  292 (545)
T ss_pred             HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccc--------------------------
Confidence            765444 44444444434499999999999999999999999999875311100                          


Q ss_pred             CCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC---------
Q 010878          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---------  431 (498)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~---------  431 (498)
                                 ..+        .+++.++++|+++++++.+.+++. ++++++.||+||+++.+..+....         
T Consensus       293 -----------~~~--------~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  352 (545)
T PRK08162        293 -----------AGI--------DHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDE  352 (545)
T ss_pred             -----------cCC--------ccceEEEECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCccc
Confidence                       000        144566789999999999998874 899999999999976555432211         


Q ss_pred             -ccccCccccCcC-CceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          432 -MCMVGTAGPVSV-YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       432 -~~~~~s~G~~~~-g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                       .....++|.+.+ +.+++|+|.+++..++.+.++.|||+|+|+.++.||+++++.+...|.+|||+||
T Consensus       353 ~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TG  421 (545)
T PRK08162        353 RAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTG  421 (545)
T ss_pred             hhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccC
Confidence             111245676665 3468888822344333322357999999999999999999999999999999998

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-44  Score=373.24  Aligned_cols=370  Identities=17%  Similarity=0.181  Sum_probs=281.7

Q ss_pred             HHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEe
Q 010878           50 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV  129 (498)
Q Consensus        50 ~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~  129 (498)
                      .+++.+|+++|+++.   ++.    ..+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~   77 (501)
T PRK13390          5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT   77 (501)
T ss_pred             hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            467789999999864   322    5899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhcccc
Q 010878          130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  209 (498)
Q Consensus       130 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (498)
                      |+++.++++++.+++.+++++++++++........ ..   ......+.+.....           ....+++.....  
T Consensus        78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~---~~~~~~~~~~~~~~-----------~~~~~~~~~~~~--  140 (501)
T PRK13390         78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAK-VG---ADLPLRLSFGGEID-----------GFGSFEAALAGA--  140 (501)
T ss_pred             ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHH-hh---hccceEEEecCccc-----------ccccHHHHhccc--
Confidence            99999999999999999999999998754332211 11   01111222221100           012333332211  


Q ss_pred             ccccCCCCCCCCeEEEEeccCCCCCCceEEe--ccHhHHHHhhh----hhhhhccccCCCCCCcEEEEecChHHHHHHHH
Q 010878          210 NEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFVSG----VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (498)
Q Consensus       210 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~--sh~~l~~~~~~----~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~  283 (498)
                      .  + .....++.++++|||||||.||+|++  +|.++......    ....+     .+..+|+++..+|++|.+++..
T Consensus       141 ~--~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~  212 (501)
T PRK13390        141 G--P-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLRW  212 (501)
T ss_pred             C--C-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHHH
Confidence            0  0 01122357999999999999999996  45554432211    11122     6788999999999999999876


Q ss_pred             HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCC
Q 010878          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  362 (498)
Q Consensus       284 ~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (498)
                      .+..+..|+++++.+. ++..+++.|+++++|+++++|+++..+++.....                             
T Consensus       213 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------  263 (501)
T PRK13390        213 CSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADV-----------------------------  263 (501)
T ss_pred             HHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchh-----------------------------
Confidence            5556778999988776 8999999999999999999999998886421100                             


Q ss_pred             CCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCc
Q 010878          363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  442 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~  442 (498)
                            ....++        +++|.+++||+++++++.+.+++.+|..+++.||+||+++++...........+++|+|+
T Consensus       264 ------~~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~  329 (501)
T PRK13390        264 ------RTRYDV--------SSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSV  329 (501)
T ss_pred             ------cccCCh--------hhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcc
Confidence                  000112        278999999999999999999998899999999999998765544332223447899999


Q ss_pred             CCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhcc---CCccccC
Q 010878          443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---DGWFHTG  498 (498)
Q Consensus       443 ~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~---dGw~~TG  498 (498)
                      +| +++|+| +++..+  ..|+.|||+|+|++++.||+++++.+.+.|.   +||++||
T Consensus       330 ~g-~~~i~d-~~~~~~--~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tG  384 (501)
T PRK13390        330 LG-DLHICD-DDGNEL--PAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVG  384 (501)
T ss_pred             cc-eEEEEC-CCCCCC--CCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcC
Confidence            99 799999 776644  4569999999999999999999999988872   6899998

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-44  Score=370.15  Aligned_cols=342  Identities=27%  Similarity=0.278  Sum_probs=279.0

Q ss_pred             HcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecC
Q 010878           53 QKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLY  132 (498)
Q Consensus        53 ~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~  132 (498)
                      +..++++|+++.    +     +++||.||.++++++|..|.     ++|+|+++++|+++++++++||+++|++++|++
T Consensus        11 ~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~   76 (471)
T PRK07787         11 AAADIADAVRIG----G-----RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVP   76 (471)
T ss_pred             cccCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecC
Confidence            456788888764    3     58999999999999999995     569999999999999999999999999999999


Q ss_pred             CCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccccccc
Q 010878          133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM  212 (498)
Q Consensus       133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (498)
                      +..+.+++..+++.+++++++++.....          ...... .+...              ...           ..
T Consensus        77 ~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~-~~~~~--------------~~~-----------~~  120 (471)
T PRK07787         77 PDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHV-PVRLH--------------ARS-----------WH  120 (471)
T ss_pred             CCCChHHHHHHHHhcCCCEEEecCCccc----------ccccce-eeecc--------------ccc-----------cc
Confidence            9999999999999999999999863110          000000 00000              000           00


Q ss_pred             cCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcC
Q 010878          213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRG  291 (498)
Q Consensus       213 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G  291 (498)
                      ......++++++++|||||||.||+|.++|.++...+......+     .+..+|++++.+|++|..|+.. ++.+++.|
T Consensus       121 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G  195 (471)
T PRK07787        121 RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRIG  195 (471)
T ss_pred             cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhcC
Confidence            11123568999999999999999999999999999888776666     7888999999999999999987 77889999


Q ss_pred             cEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHH
Q 010878          292 ASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD  370 (498)
Q Consensus       292 ~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (498)
                      +++++.+. ++..+++.++ +++|+++++|.++..+++.....                                     
T Consensus       196 ~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------  237 (471)
T PRK07787        196 NRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEAA-------------------------------------  237 (471)
T ss_pred             CEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcccc-------------------------------------
Confidence            99998765 9999999999 99999999999998886521000                                     


Q ss_pred             HHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEee
Q 010878          371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLE  450 (498)
Q Consensus       371 ~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~iv  450 (498)
                       .++        +++|.+++||+++++++.+++++.++.++++.||+||++..+..... ....++++|+|++|++++|+
T Consensus       238 -~~l--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~g~~~~i~  307 (471)
T PRK07787        238 -RAL--------RGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRAD-GERRPGWVGLPLAGVETRLV  307 (471)
T ss_pred             -ccc--------cceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCC-CcccCCcccccCCCcEEEEE
Confidence             011        38999999999999999999999889999999999999865444332 23334789999999999999


Q ss_pred             ecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       451 d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      | +++..++.+.++.|||+++|++++.||+++++.+.+.| .+|||+||
T Consensus       308 d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TG  355 (471)
T PRK07787        308 D-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTG  355 (471)
T ss_pred             C-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecC
Confidence            9 77766654323479999999999999999999999999 69999998

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-44  Score=381.16  Aligned_cols=382  Identities=19%  Similarity=0.244  Sum_probs=293.5

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ....++.+.|.+.++.+|+++|+++.   +      +++||.||.++++++|..|.+.|+++|++|+++++|++++++++
T Consensus        34 ~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~  104 (600)
T PRK08279         34 DSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAW  104 (600)
T ss_pred             CCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence            45678999999999999999999875   3      48999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      +||+++|++++|+++.++.+++.++++.++++++|++.+....+.+..... .....++..++....          ...
T Consensus       105 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~  173 (600)
T PRK08279        105 LGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL-ARPPRLWVAGGDTLD----------DPE  173 (600)
T ss_pred             HHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhh-cccceEEEecCcccc----------ccc
Confidence            999999999999999999999999999999999999988766654432221 222233333221100          011


Q ss_pred             eHHHHHhccccc----cccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecC
Q 010878          199 SWDEFLHLGKVN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (498)
Q Consensus       199 ~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (498)
                      .+.++.......    .........+++++++|||||||.||+|.++|.+++.++..+...+     ++.++|++++.+|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~~p  248 (600)
T PRK08279        174 GYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCCLP  248 (600)
T ss_pred             cHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEecC
Confidence            233333221111    1112234568999999999999999999999999999998877766     8899999999999


Q ss_pred             hHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 010878          275 LAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (498)
Q Consensus       275 l~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (498)
                      ++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.+++.+++.....                   
T Consensus       249 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~-------------------  309 (600)
T PRK08279        249 LYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKP-------------------  309 (600)
T ss_pred             chhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCc-------------------
Confidence            999999987 4456888999888776 9999999999999999999999998876421100                   


Q ss_pred             HHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEeeeccccCcccccccCCCC
Q 010878          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDE  431 (498)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~l~~~YG~tE~~~~~~~~~~~~  431 (498)
                                     .   ..        ..++|.+  +|+.+++++.+++.+.++. .+++.||+||++..++..    
T Consensus       310 ---------------~---~~--------~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~----  357 (600)
T PRK08279        310 ---------------T---DR--------DHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV----  357 (600)
T ss_pred             ---------------c---cc--------CcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc----
Confidence                           0   00        0267754  4778999999999999876 599999999987543321    


Q ss_pred             ccccCccccCcC----Cce---------EEeeecCCCCCCCCCCCCCCeEE--EecCCCcccccCCchhhhhhc-c----
Q 010878          432 MCMVGTAGPVSV----YSE---------LRLEEVPEMGYSPLDDPPCGEVC--VRGKTLFSGYYKNPDLTRESI-I----  491 (498)
Q Consensus       432 ~~~~~s~G~~~~----g~~---------i~ivd~~~~~~~~~~~~~~Gei~--v~g~~v~~gY~~~~~~~~~~f-~----  491 (498)
                      ....+++|.+.+    +..         ..|.+ .++...+++.|+.|||+  ++|++++.|| ++++.+.+.| .    
T Consensus       358 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~  435 (600)
T PRK08279        358 FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFK  435 (600)
T ss_pred             CCCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccC
Confidence            123367776665    332         23333 34444456677899998  7899999999 8888887765 2    


Q ss_pred             --CCccccC
Q 010878          492 --DGWFHTG  498 (498)
Q Consensus       492 --dGw~~TG  498 (498)
                        +|||+||
T Consensus       436 ~~~~~~~TG  444 (600)
T PRK08279        436 KGDAWFNTG  444 (600)
T ss_pred             CCCceEeec
Confidence              5899998

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.7e-44  Score=372.02  Aligned_cols=376  Identities=20%  Similarity=0.194  Sum_probs=292.5

Q ss_pred             HHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeE
Q 010878           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (498)
Q Consensus        49 ~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  128 (498)
                      ...++++|+++|+++.   ++.    +.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~   76 (511)
T PRK13391          4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY   76 (511)
T ss_pred             hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence            4677889999999874   222    579999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccc
Q 010878          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (498)
Q Consensus       129 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (498)
                      +++++.++.+++.++++.++++.++++......+.+... ........+.+.....         ......+++..... 
T Consensus        77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-  145 (511)
T PRK13391         77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLK-QCPGVRHRLVLDGDGE---------LEGFVGYAEAVAGL-  145 (511)
T ss_pred             eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHh-cCCCceEEEEecCCCC---------CcccccHHHHhcCC-
Confidence            999999999999999999999999999877655433322 2233334444432211         00122334333221 


Q ss_pred             cccccCCCCCCCCeEEEEeccCCCCCCceEEec--cHhHHHHh---hhhhhhhccccCCCCCCcEEEEecChHHHHHHHH
Q 010878          209 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT--HETIATFV---SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (498)
Q Consensus       209 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s--h~~l~~~~---~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~  283 (498)
                        +. ......++.++++|||||||.||+|.++  |.++....   ......+     .+..++++++.+|++|.+++..
T Consensus       146 --~~-~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~  217 (511)
T PRK13391        146 --PA-TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRA  217 (511)
T ss_pred             --CC-CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHH
Confidence              11 1112345678999999999999999964  55543322   2222333     6778999999999999999988


Q ss_pred             HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCC
Q 010878          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  362 (498)
Q Consensus       284 ~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (498)
                      .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+++.....                             
T Consensus       218 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------------  268 (511)
T PRK13391        218 VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEV-----------------------------  268 (511)
T ss_pred             HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhh-----------------------------
Confidence            8888999999998876 9999999999999999999999998876421110                             


Q ss_pred             CCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCc
Q 010878          363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  442 (498)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~  442 (498)
                            .++.++        +++|.+++||+++++++.+++++.+|..+++.||+||++.++..........++++|+|+
T Consensus       269 ------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~  334 (511)
T PRK13391        269 ------RDKYDL--------SSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAM  334 (511)
T ss_pred             ------cccCCc--------cceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcc
Confidence                  001112        389999999999999999999998899999999999998876554433334458999999


Q ss_pred             CCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cC-CccccC
Q 010878          443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID-GWFHTG  498 (498)
Q Consensus       443 ~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~d-Gw~~TG  498 (498)
                      +| +++|+| +++...+  .|+.|||+++|+ ++.||+++++.+.+.| .+ |||+||
T Consensus       335 ~g-~~~i~d-~~~~~~~--~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TG  387 (511)
T PRK13391        335 FG-DLHILD-DDGAELP--PGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVG  387 (511)
T ss_pred             cc-eEEEEC-CCCCCCC--CCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecC
Confidence            99 699998 6665544  458999999999 8899999999998888 44 999998

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=1.6e-44  Score=407.14  Aligned_cols=382  Identities=19%  Similarity=0.217  Sum_probs=294.4

Q ss_pred             CCcccHHHHHHHHHHcCC-CCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYP-GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~p-d~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~  117 (498)
                      +...++.+.+.+.++++| ++.++.+.   ++     +++||+||.++++++|+.|++ |+++||+|+++++|+++++++
T Consensus       628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~  698 (1140)
T PRK06814        628 DYDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT  698 (1140)
T ss_pred             cccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence            345678888888888886 55666542   22     579999999999999999975 999999999999999999999


Q ss_pred             HHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhh-cccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010878          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (498)
Q Consensus       118 ~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (498)
                      ++||+++|++++|+|+..+.+++.+++++++++++|+++....... ....+.......++.+++.....        ..
T Consensus       699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~  770 (1140)
T PRK06814        699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQI--------GL  770 (1140)
T ss_pred             HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccC--------Ch
Confidence            9999999999999999999999999999999999999976554321 00011112223445444321100        00


Q ss_pred             eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010878          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                      ...+++..... ..........++++++++|||||||.||+|.++|+++.+.+......+     +++++|++++.+|++
T Consensus       771 ~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~  844 (1140)
T PRK06814        771 ADKIKGLLAGR-FPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVF  844 (1140)
T ss_pred             HHHHHHHhhcc-CCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchH
Confidence            00111111111 011111134678999999999999999999999999999888877666     788999999999999


Q ss_pred             HHHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010878          277 HILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (498)
Q Consensus       277 h~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (498)
                      |.+++.. ++.++..|+++++.+.  +...+.+.++++++|+++.+|++++.+.+...                      
T Consensus       845 h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~----------------------  902 (1140)
T PRK06814        845 HSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH----------------------  902 (1140)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc----------------------
Confidence            9999955 7788999999998764  66788899999999999999999988754210                      


Q ss_pred             HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcc
Q 010878          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~  433 (498)
                                       ..++        +++|.+++||+++++++.+.+.+.+|+++++.||+||++..+....+.. .
T Consensus       903 -----------------~~~~--------~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~  956 (1140)
T PRK06814        903 -----------------PYDF--------RSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH-N  956 (1140)
T ss_pred             -----------------cccc--------cceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-C
Confidence                             0111        3899999999999999999999999999999999999988766554333 3


Q ss_pred             ccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhh-hhccCCccccC
Q 010878          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR-ESIIDGWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~-~~f~dGw~~TG  498 (498)
                      ..+++|+|+||+++++++ .++      .++.|||+++|++++.||+++++... +.+.||||+||
T Consensus       957 ~~~~vG~p~~g~~~~~~~-~~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG 1015 (1140)
T PRK06814        957 KAGTVGRLLPGIEYRLEP-VPG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTG 1015 (1140)
T ss_pred             CCCcCCccCCCCeEEEee-cCC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecC
Confidence            348999999999999988 332      24689999999999999998765332 22368999998

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-44  Score=377.52  Aligned_cols=384  Identities=17%  Similarity=0.202  Sum_probs=280.5

Q ss_pred             cHHHHHHHHHHcCCCCCceeeccccCC---CCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           43 TAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        43 tl~~~l~~~~~~~pd~~a~~~~~~~d~---~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ++.++|++++..+|+++|+++.   +.   ..+..+.+||.||..++.++|+.|.+.| .+||+|+++++|+++++++++
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l   77 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL   77 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence            6789999999999999999864   31   1122368999999999999999999999 689999999999999999999


Q ss_pred             HHHHcCCeEeecCC---CCChhHHHHHHhhcCccEEEEcCchhHHhhcccccc-cCCccEEEEecCCcHHHHHHHhhcCc
Q 010878          120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-AQRLRVMVCFTSLTAEQKEMAVQTGI  195 (498)
Q Consensus       120 A~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~vi~~~~~~~~~~~~~~~~~~  195 (498)
                      ||+++|++++|+++   ..+.+++.++++++++++++++......+.+..... ......++.++..             
T Consensus        78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  144 (578)
T PRK05850         78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL-------------  144 (578)
T ss_pred             HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence            99999999999997   457889999999999999999987666553321100 0011112222110             


Q ss_pred             ceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccc-cCCCCCCcEEEEecC
Q 010878          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF-EDKMTVDDVYLSFLP  274 (498)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~-~~~~~~~d~~l~~~p  274 (498)
                            ++..   ..........++++++++|||||||.||+|.++|.++++++......+... ......++++++++|
T Consensus       145 ------~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  215 (578)
T PRK05850        145 ------DLDS---PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLP  215 (578)
T ss_pred             ------cccc---CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECC
Confidence                  0000   000111234568999999999999999999999999998776654321000 001456889999999


Q ss_pred             hHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHH-HHHHHHHHHhhchHHHHHHHH
Q 010878          275 LAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKI-HEGIKKALEELRPLRRRIFDA  347 (498)
Q Consensus       275 l~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l-~~~~~~~~~~~~~~~~~~~~~  347 (498)
                      ++|..|+.. ++.+++.|+++++.+.     ++..+++.++++++++. .+|.++..+ .......              
T Consensus       216 l~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~--------------  280 (578)
T PRK05850        216 FYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD--------------  280 (578)
T ss_pred             CCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh--------------
Confidence            999999876 7788999999998863     68999999999999865 556554333 2211000              


Q ss_pred             HHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC------CceEeeeccccCc
Q 010878          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETC  421 (498)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g------~~l~~~YG~tE~~  421 (498)
                                          ....+++        +++|.+++||+++++++.++|.+.|+      ..+++.||+||++
T Consensus       281 --------------------~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  332 (578)
T PRK05850        281 --------------------DMAGLDL--------GGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEAT  332 (578)
T ss_pred             --------------------hhcCcch--------hhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhh
Confidence                                0011122        27999999999999999999988763      3689999999987


Q ss_pred             ccccccCCCCc------------------------cccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcc
Q 010878          422 GPTTVCFPDEM------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (498)
Q Consensus       422 ~~~~~~~~~~~------------------------~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~  477 (498)
                      ..+........                        ....++|.|. +.+++|+| +++. .+++.|+.|||+|+|++++.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-~~~~-~~~~~g~~Gel~v~g~~~~~  409 (578)
T PRK05850        333 VYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-PDTC-IECPAGTVGEIWVHGDNVAA  409 (578)
T ss_pred             hheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-CCCC-cCCCCCCEEEEEEecCcccc
Confidence            65443221110                        0012345554 58999999 4432 34456699999999999999


Q ss_pred             cccCCchhhhhhcc------------CCccccC
Q 010878          478 GYYKNPDLTRESII------------DGWFHTG  498 (498)
Q Consensus       478 gY~~~~~~~~~~f~------------dGw~~TG  498 (498)
                      ||+++++.+++.|.            +|||+||
T Consensus       410 gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TG  442 (578)
T PRK05850        410 GYWQKPEETERTFGATLVDPSPGTPEGPWLRTG  442 (578)
T ss_pred             cccCChhhhHHHhhcccccccccCCCCCeeecc
Confidence            99999999998882            5799998

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.9e-43  Score=363.80  Aligned_cols=389  Identities=20%  Similarity=0.211  Sum_probs=298.3

Q ss_pred             cHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 010878           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (498)
Q Consensus        43 tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~  122 (498)
                      ++.+++.+.++++||++|+++.    +     +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~   74 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVCG----D-----RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF   74 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            7899999999999999999874    3     589999999999999999999999999999999999999999999999


Q ss_pred             HcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHH
Q 010878          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (498)
Q Consensus       123 ~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~  202 (498)
                      ++|++++|+++.++.+++.++++++++++++++......+.+... ..+..+.++.+++.....      .....+++++
T Consensus        75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  147 (533)
T PRK07798         75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLP-RLPKLRTLVVVEDGSGND------LLPGAVDYED  147 (533)
T ss_pred             hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhc-cCCCccEEEEecCCcccc------cCCccccHHH
Confidence            999999999999999999999999999999999877666554432 234556666666443210      0112446777


Q ss_pred             HHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhcc----ccCCC------CCCcEEEEe
Q 010878          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ----FEDKM------TVDDVYLSF  272 (498)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~----~~~~~------~~~d~~l~~  272 (498)
                      ++....... .. .....+.++++|||||||.||+|+++|.++..........+..    ....+      ..+++++..
T Consensus       148 ~~~~~~~~~-~~-~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (533)
T PRK07798        148 ALAAGSPER-DF-GERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA  225 (533)
T ss_pred             HHhccCCcC-CC-CCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence            665432111 11 1223345789999999999999999999988765543221100    00011      567899999


Q ss_pred             cChHHHHHHHHHHHHHHcCcEEEEeC--C-ChHhHHHHHhhhCCcEEEecchHHHH-HHHHHHHHHHhhchHHHHHHHHH
Q 010878          273 LPLAHILDRVIEEYFFRRGASVGYYH--G-DLNALRDDLMELKPTLLAGVPRVFEK-IHEGIKKALEELRPLRRRIFDAL  348 (498)
Q Consensus       273 ~pl~h~~g~~~~~~~l~~G~~~~~~~--~-~~~~~~~~i~~~~~t~l~~~P~~~~~-l~~~~~~~~~~~~~~~~~~~~~~  348 (498)
                      +|++|..++..++.+++.|+++++.+  . ++..+++.++++++|.+.++|..+.. +.+.+. ..              
T Consensus       226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~~--------------  290 (533)
T PRK07798        226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-AR--------------  290 (533)
T ss_pred             cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-cc--------------
Confidence            99999999998889999999999988  4 89999999999999999999876643 322111 00              


Q ss_pred             HHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCccccccc
Q 010878          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVC  427 (498)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~  427 (498)
                                                   .....+++|.+++||+++++++.+++++.+ +..+++.||+||++.+....
T Consensus       291 -----------------------------~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  341 (533)
T PRK07798        291 -----------------------------GPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGT  341 (533)
T ss_pred             -----------------------------ccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccC
Confidence                                         000124899999999999999999999988 78999999999997655443


Q ss_pred             CCCCccccCccc--cCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhcc--C--CccccC
Q 010878          428 FPDEMCMVGTAG--PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTG  498 (498)
Q Consensus       428 ~~~~~~~~~s~G--~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~--d--Gw~~TG  498 (498)
                      .....   ...|  .+.++..++|++ +++..++.+....|+|+ +++.++.||+++++.+.+.|.  +  +||+||
T Consensus       342 ~~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TG  413 (533)
T PRK07798        342 VAKGA---VHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPG  413 (533)
T ss_pred             CCCCC---ccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcC
Confidence            22211   2334  788999999999 77775555422226665 667899999999999988882  3  599998

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1.5e-43  Score=356.18  Aligned_cols=341  Identities=25%  Similarity=0.305  Sum_probs=279.0

Q ss_pred             eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcC
Q 010878           78 TYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD  156 (498)
Q Consensus        78 Ty~el~~~~~~lA~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~  156 (498)
                      ||.||.+.++++|..|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++.++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCc
Q 010878          157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPK  236 (498)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK  236 (498)
                      .....+.....       .++......                 ...................+++++++|||||||.||
T Consensus        81 ~~~~~~~~~~~-------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK  136 (408)
T TIGR01733        81 ALASRLAGLVL-------PIILVDPLE-----------------LAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK  136 (408)
T ss_pred             chhhhccccCC-------ceEEechhh-----------------hhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence            76665432211       122221110                 000000000011111134688999999999999999


Q ss_pred             eEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhC
Q 010878          237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELK  312 (498)
Q Consensus       237 ~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~  312 (498)
                      +|.++|.+++..+......+     .+..+|++++..|++|.+++..++.++..|+++++.+.    .+..+.+.+++++
T Consensus       137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  211 (408)
T TIGR01733       137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP  211 (408)
T ss_pred             EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence            99999999999998887766     78899999999999999999889999999999998876    2688999999999


Q ss_pred             CcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcC
Q 010878          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (498)
Q Consensus       313 ~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G  392 (498)
                      +|.+.++|.+++.+++...                                        .++        ++||.+++||
T Consensus       212 ~t~l~~~p~~~~~l~~~~~----------------------------------------~~~--------~~l~~v~~~g  243 (408)
T TIGR01733       212 VTVLNLTPSLLALLAAALP----------------------------------------PAL--------ASLRLVILGG  243 (408)
T ss_pred             ceEEEeCHHHHHHHHHhhh----------------------------------------hcc--------cCceEEEEeC
Confidence            9999999999999876422                                        011        3899999999


Q ss_pred             CCCCHHHHHHHHHhcC-CceEeeeccccCcccccccCCCCc---c-ccCccccCcCCceEEeeecCCCCCCCCCCCCCCe
Q 010878          393 APLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEM---C-MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  467 (498)
Q Consensus       393 ~~l~~~~~~~~~~~~g-~~l~~~YG~tE~~~~~~~~~~~~~---~-~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Ge  467 (498)
                      +++++++.+.+++.++ +.+++.||+||++.++........   . .+.++|+|+++++++|+| +++..  ++.|+.||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~--~~~g~~Ge  320 (408)
T TIGR01733       244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDLRP--VPVGVVGE  320 (408)
T ss_pred             ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCCCC--CCCCCceE
Confidence            9999999999999997 899999999999987753322211   1 157899999999999999 66554  44568999


Q ss_pred             EEEecCCCcccccCCchhhhhhc-cC------C--ccccC
Q 010878          468 VCVRGKTLFSGYYKNPDLTRESI-ID------G--WFHTG  498 (498)
Q Consensus       468 i~v~g~~v~~gY~~~~~~~~~~f-~d------G--w~~TG  498 (498)
                      |+|+|++++.||+++++.+.+.| .+      |  ||+||
T Consensus       321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TG  360 (408)
T TIGR01733       321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTG  360 (408)
T ss_pred             EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECC
Confidence            99999999999999999998887 22      3  99998

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.9e-43  Score=368.63  Aligned_cols=374  Identities=18%  Similarity=0.230  Sum_probs=289.8

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      |.++.+.|...+...|+.+++...   ++.    +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la   73 (545)
T PRK07768          1 MSRFTEKMYANARTSPRGMVTGEP---DAP----VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQG   73 (545)
T ss_pred             CchHHHHHHHHhhCCCcceEEecC---CCc----eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence            467889999999999999988765   442    6899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHH-------HHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhc
Q 010878          121 CNALSLICVPLYDTLGPGAV-------NFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~  193 (498)
                      |+++|++++++++..+.+++       .++++.++++.+++++.....+.. ....                        
T Consensus        74 ~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~------------------------  128 (545)
T PRK07768         74 LWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPV-LEEK------------------------  128 (545)
T ss_pred             HHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhh-hccc------------------------
Confidence            99999999999988876554       456777899999998765432211 1000                        


Q ss_pred             CcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCC-cEEEEe
Q 010878          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD-DVYLSF  272 (498)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~-d~~l~~  272 (498)
                      ......++++......   ......++++++++|||||||.||+|+++|.+++..+......+     ++..+ |+++++
T Consensus       129 ~~~~~~~~~l~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~  200 (545)
T PRK07768        129 GIRVLTVADLLAADPI---DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSW  200 (545)
T ss_pred             CCceeehhhhcccCCC---CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEe
Confidence            0113345555432211   22234578999999999999999999999999999887766655     66665 899999


Q ss_pred             cChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHH
Q 010878          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (498)
Q Consensus       273 ~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (498)
                      +|++|..++.. ++.++..|+++++.+.     ++..+.+.++++++|++..+|.++..+.+.+.....           
T Consensus       201 ~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------  269 (545)
T PRK07768        201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAK-----------  269 (545)
T ss_pred             CCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhcccc-----------
Confidence            99999999986 5567999999988753     678889999999999988878777666543211100           


Q ss_pred             HHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHh---cCC---ceEeeeccccC
Q 010878          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTET  420 (498)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~g~---~l~~~YG~tE~  420 (498)
                                         .   ...++        ++||.++++|+++++++.+++.+.   +|.   .+++.||+||+
T Consensus       270 -------------------~---~~~~~--------~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~  319 (545)
T PRK07768        270 -------------------P---GAFDL--------SSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEA  319 (545)
T ss_pred             -------------------c---cCCCc--------hheeeEEeccCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence                               0   01122        389999999999999999998774   555   49999999999


Q ss_pred             cccccccCCCC-------------------------ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCC
Q 010878          421 CGPTTVCFPDE-------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL  475 (498)
Q Consensus       421 ~~~~~~~~~~~-------------------------~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v  475 (498)
                      +..++......                         ....+++|+|++|++++|+| ++++.++  .++.|||+++|+.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~--~g~~Gel~v~~~~~  396 (545)
T PRK07768        320 TLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLP--PRGVGVIELRGESV  396 (545)
T ss_pred             ceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCC--CCCEEEEEEccCcc
Confidence            87655432210                         11236899999999999999 7776554  55899999999999


Q ss_pred             cccccCCchhhhhhccCCccccC
Q 010878          476 FSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       476 ~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      +.||++++......+.+|||+||
T Consensus       397 ~~gy~~~~~~~~~~~~~g~~~TG  419 (545)
T PRK07768        397 TPGYLTMDGFIPAQDADGWLDTG  419 (545)
T ss_pred             cccccCCCCCcccccCCCeeecc
Confidence            99999866554444478999998

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.3e-43  Score=364.52  Aligned_cols=361  Identities=20%  Similarity=0.214  Sum_probs=283.6

Q ss_pred             eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEE
Q 010878           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (498)
Q Consensus        75 ~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~  154 (498)
                      +.+||.||.+.++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCC
Q 010878          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (498)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~  234 (498)
                      ++.....+.+.........+.++......           .....+++......    .......++.++++|||||||.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG~  154 (502)
T PRK08276         90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTGR  154 (502)
T ss_pred             ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCCC
Confidence            98776655433222211344454442211           11234554443211    1112345678999999999999


Q ss_pred             CceEEeccHhHHHHhh--hhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhh
Q 010878          235 PKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMEL  311 (498)
Q Consensus       235 pK~v~~sh~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~  311 (498)
                      ||+|.++|.++.....  ...... ........++++++.+|++|..++...+.++..|+++++.+. ++..+++.++++
T Consensus       155 PK~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  233 (502)
T PRK08276        155 PKGIKRPLPGLDPDEAPGMMLALL-GFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERY  233 (502)
T ss_pred             CceEEEccCCcchhhhhHHhhhhh-hhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHh
Confidence            9999999877553321  110100 000123578899999999999999888889999999988876 899999999999


Q ss_pred             CCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEc
Q 010878          312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG  391 (498)
Q Consensus       312 ~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~  391 (498)
                      ++|+++++|.++..+++.....                                   ...+++        +++|.+++|
T Consensus       234 ~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~~~--------~~lr~i~~~  270 (502)
T PRK08276        234 RVTHSQLVPTMFVRMLKLPEEV-----------------------------------RARYDV--------SSLRVAIHA  270 (502)
T ss_pred             CCeEEEehHHHHHHHHhCcccc-----------------------------------CCCCCc--------ccceEEEec
Confidence            9999999999998886521100                                   011222        389999999


Q ss_pred             CCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEe
Q 010878          392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR  471 (498)
Q Consensus       392 G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~  471 (498)
                      |++++.++.+++.+.+|..+++.||+||++.+++..........+++|+|+ +++++|+| +++..+  +.|+.|||+++
T Consensus       271 g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~--~~g~~Gel~v~  346 (502)
T PRK08276        271 AAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNEL--PPGEIGTVYFE  346 (502)
T ss_pred             CCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCC--cCCCceEEEEE
Confidence            999999999999998899999999999999876665544344457899999 88999999 766544  45589999999


Q ss_pred             cCCCcccccCCchhhhhhc-cCCccccC
Q 010878          472 GKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       472 g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      |++++.||+++++.+.+.| .+|||+||
T Consensus       347 ~~~~~~gy~~~~~~~~~~~~~~~~~~TG  374 (502)
T PRK08276        347 MDGYPFEYHNDPEKTAAARNPHGWVTVG  374 (502)
T ss_pred             CCCccchhcCCHHHHHHHhcCCCceeec
Confidence            9999999999999999998 56999998

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=7.4e-43  Score=361.25  Aligned_cols=365  Identities=20%  Similarity=0.201  Sum_probs=282.8

Q ss_pred             eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEE
Q 010878           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (498)
Q Consensus        75 ~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~  154 (498)
                      +.+||.||.++++++|+.|.++|+++|++|+++++|+++++++++||+++|++++++++..+.+++.++++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHhhcccccccCCccEEEEecCCcHHHH--HHHh---hcCcceeeHHHHHhccccccccCCCCCCCCeEEEEecc
Q 010878          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK--EMAV---QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS  229 (498)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  229 (498)
                      +......+.+...    ....++..........  ....   ........++++.....    .......+++++++|||
T Consensus        90 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TS  161 (509)
T PRK12406         90 HADLLHGLASALP----AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTS  161 (509)
T ss_pred             ccchhhhhhhhhh----cccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECC
Confidence            8877665433221    1111221111100000  0000   00112334555543221    11233568999999999


Q ss_pred             CCCCCCceEEeccHhHH---HHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCC-ChHhHH
Q 010878          230 GTSGDPKGVVLTHETIA---TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALR  305 (498)
Q Consensus       230 GtTG~pK~v~~sh~~l~---~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~-~~~~~~  305 (498)
                      ||||.||+|.++|.+..   .........+     ++..++++++.+|++|..+....+.++..|+++++.+. ++..++
T Consensus       162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  236 (509)
T PRK12406        162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELL  236 (509)
T ss_pred             CCCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHH
Confidence            99999999998776543   3333333333     67889999999999999988777778889999988776 999999


Q ss_pred             HHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCce
Q 010878          306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL  385 (498)
Q Consensus       306 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  385 (498)
                      +.++++++|++.++|.++..+++.....                                   .+..++        +++
T Consensus       237 ~~l~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~~~--------~~l  273 (509)
T PRK12406        237 QLIERHRITHMHMVPTMFIRLLKLPEEV-----------------------------------RAKYDV--------SSL  273 (509)
T ss_pred             HHHHHcCCeEEEccHHHHHHHHhCchhh-----------------------------------cccCCC--------Cce
Confidence            9999999999999999999886421100                                   001112        389


Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCC
Q 010878          386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC  465 (498)
Q Consensus       386 r~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~  465 (498)
                      |.+++||+++++++.+++.+.++..+++.||+||++.+++.........++++|.|+++++++|+| +++..+  ..|+.
T Consensus       274 ~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~--~~g~~  350 (509)
T PRK12406        274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPL--PQGEI  350 (509)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCCC--CCCCc
Confidence            999999999999999999998899999999999999876655444344558999999999999999 776544  45589


Q ss_pred             CeEEEecCCCcc-cccCCchhhhhhccCCccccC
Q 010878          466 GEVCVRGKTLFS-GYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       466 Gei~v~g~~v~~-gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      |||+++|+.++. ||+++++.+...+.+|||+||
T Consensus       351 Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TG  384 (509)
T PRK12406        351 GEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSG  384 (509)
T ss_pred             eEEEEECCccccccccCCchhcccccCCCCeEEc
Confidence            999999998875 999999988887799999998

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=3.8e-43  Score=358.43  Aligned_cols=336  Identities=24%  Similarity=0.290  Sum_probs=275.7

Q ss_pred             cccHHHHH-HHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           41 LNTAWDIF-SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        41 ~~tl~~~l-~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      |+++.+++ ..+++++|+++|+++.    +     +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++
T Consensus         1 ~~~~~~~~~~~~a~~~~~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~l   71 (458)
T PRK09029          1 MMIFSDWPWRHWAQVRPQAIALRLN----D-----EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYL   71 (458)
T ss_pred             CchhhcChHHHHHHhCCCceeeecC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHH
Confidence            35566665 5668999999999753    3     489999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++|+++..+.+++..+++++++++++++.+... +..        ....                      .
T Consensus        72 a~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------~~~~----------------------~  120 (458)
T PRK09029         72 ALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------LTSL----------------------H  120 (458)
T ss_pred             HHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------cccc----------------------c
Confidence            99999999999999999999999999999999999875422 100        0000                      0


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  279 (498)
                      +..      ..........++++++++|||||||.||+|.++|.+++..+......+     +...+|+++..+|++|.+
T Consensus       121 ~~~------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~  189 (458)
T PRK09029        121 LQL------VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVS  189 (458)
T ss_pred             ccc------ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhh
Confidence            000      001112234578899999999999999999999999999988876665     788899999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEeCCChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcc
Q 010878          280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (498)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (498)
                      |+..++.++..|+++++.+.  ..+.+.+  .++|.+..+|+++..++.....                           
T Consensus       190 g~~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~---------------------------  238 (458)
T PRK09029        190 GQGIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE---------------------------  238 (458)
T ss_pred             hhHHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc---------------------------
Confidence            99877788999999998764  5566666  3799999999999887642110                           


Q ss_pred             cCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccc
Q 010878          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  439 (498)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G  439 (498)
                                            ..++|.+++||+++++.+.+++... |.++++.||+||++...+.....  . ..++|
T Consensus       239 ----------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~--~-~~~~G  292 (458)
T PRK09029        239 ----------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRAD--G-LAGVG  292 (458)
T ss_pred             ----------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCCC--C-CCCCC
Confidence                                  0278999999999999999998864 99999999999998755443322  2 25799


Q ss_pred             cCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       440 ~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      +|+++++++|++              |||+|+|+.++.||+++++.+.....+|||+||
T Consensus       293 ~~~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TG  337 (458)
T PRK09029        293 SPLPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATR  337 (458)
T ss_pred             CCCCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCC
Confidence            999999999977              899999999999999999887655578999998

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.5e-42  Score=350.48  Aligned_cols=325  Identities=25%  Similarity=0.332  Sum_probs=266.0

Q ss_pred             eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCc
Q 010878           78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK  157 (498)
Q Consensus        78 Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~  157 (498)
                      ||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..++++++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCce
Q 010878          158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKG  237 (498)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~  237 (498)
                      .....              +.                  ...+.++................+++++++|||||||.||+
T Consensus        81 ~~~~~--------------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        81 LEEKD--------------FQ------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             ccccc--------------ee------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            32110              00                  00111111111011111123456789999999999999999


Q ss_pred             EEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCCChHhHHHHHhhhCCcEEE
Q 010878          238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA  317 (498)
Q Consensus       238 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~  317 (498)
                      |.++|.++...+......+     +++++|++++.+|++|..++..++.++..|+++++.+.. ..+++.++++++|++.
T Consensus       129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~  202 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHIS  202 (436)
T ss_pred             EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEE
Confidence            9999999999888877766     788999999999999999998788899999999988653 3899999999999999


Q ss_pred             ecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCH
Q 010878          318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST  397 (498)
Q Consensus       318 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~  397 (498)
                      ++|.++..+++....                                                 .+++|.++++|+++++
T Consensus       203 ~~P~~l~~l~~~~~~-------------------------------------------------~~~l~~~~~~G~~~~~  233 (436)
T TIGR01923       203 LVPTQLNRLLDEGGH-------------------------------------------------NENLRKILLGGSAIPA  233 (436)
T ss_pred             eHHHHHHHHHhCcCC-------------------------------------------------CCceEEEEECCCCCCH
Confidence            999999888652100                                                 0279999999999999


Q ss_pred             HHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcc
Q 010878          398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (498)
Q Consensus       398 ~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~  477 (498)
                      ++.++++. +|+++++.||+||++..++...........++|.|+++++++|.+ ++..       +.|||+++|+.++.
T Consensus       234 ~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-------~~Gel~v~~~~~~~  304 (436)
T TIGR01923       234 PLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNKE-------GHGEIMVKGANLMK  304 (436)
T ss_pred             HHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCCC-------CceEEEEECCccch
Confidence            99998876 499999999999998766654443322224599999999999954 2221       57999999999999


Q ss_pred             cccCCchhhhhhccCCccccC
Q 010878          478 GYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       478 gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ||+++++.+...+.+|||+||
T Consensus       305 gy~~~~~~~~~~~~~~~~~TG  325 (436)
T TIGR01923       305 GYLYQGELTPAFEQQGWFNTG  325 (436)
T ss_pred             hhCCChhhhhhhhcCCCeecc
Confidence            999988888776788999998

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=3.6e-42  Score=349.05  Aligned_cols=308  Identities=19%  Similarity=0.195  Sum_probs=247.3

Q ss_pred             eeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEE
Q 010878           76 WKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (498)
Q Consensus        76 ~~Ty~el~~~~~~lA~~L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~  154 (498)
                      -+.|+||.++++++|++|.+.|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~   98 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG   98 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence            37899999999999999999988 57999999999999999999999999999999999999999999999999999998


Q ss_pred             cCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCC
Q 010878          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (498)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~  234 (498)
                      +.+.....                ....                .         .   ......++++++++|||||||.
T Consensus        99 ~~~~~~~~----------------~~~~----------------~---------~---~~~~~~~~~~~~i~~TSGTTG~  134 (452)
T PRK07445         99 LDQLKLSH----------------PPPL----------------P---------S---QGILPNLETGWIMIPTGGSSGQ  134 (452)
T ss_pred             cCcccccc----------------CCCC----------------C---------c---cccCCCCCCcEEEEeCCCCCCC
Confidence            76532100                0000                0         0   0011246789999999999999


Q ss_pred             CceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCC
Q 010878          235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKP  313 (498)
Q Consensus       235 pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~  313 (498)
                      ||+|+++|.++++.+......+     ++.+ +++++++|++|.+|+..++.+++.|+++++.+. ..........++++
T Consensus       135 PKgV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~  208 (452)
T PRK07445        135 IRFAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSD  208 (452)
T ss_pred             CcEEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCc
Confidence            9999999999998887766555     4544 467889999999999888889999999998874 23333344457899


Q ss_pred             cEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCC
Q 010878          314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA  393 (498)
Q Consensus       314 t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~  393 (498)
                      |+++++|++++.+++..                                        ..++        ++||.+++||+
T Consensus       209 t~~~~vP~~l~~l~~~~----------------------------------------~~~l--------~~l~~i~~gG~  240 (452)
T PRK07445        209 FFLSLVPTQLQRLLQLR----------------------------------------PQWL--------AQFRTILLGGA  240 (452)
T ss_pred             eEEEehHHHHHHHHhhC----------------------------------------hhhh--------hcceEEEECCc
Confidence            99999999999886410                                        0011        38999999999


Q ss_pred             CCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC-ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec
Q 010878          394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG  472 (498)
Q Consensus       394 ~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~-~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g  472 (498)
                      ++++++.+.++. +++++++.||+||++..+....+.. ....+++|+|+|+++++|++           ++.|||+|+|
T Consensus       241 ~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~g  308 (452)
T PRK07445        241 PAWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQA  308 (452)
T ss_pred             cCCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEeC
Confidence            999999998876 4899999999999986655443322 23347899999999999972           2579999999


Q ss_pred             CCCcccccCCchhhhhhccCCccccC
Q 010878          473 KTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       473 ~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ++++.||++++..     .+|||+||
T Consensus       309 ~~~~~gY~~~~~~-----~~g~~~TG  329 (452)
T PRK07445        309 QSLALGYYPQILD-----SQGIFETD  329 (452)
T ss_pred             CccchhhcCCccC-----CCCEEECC
Confidence            9999999976431     47999998

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-41  Score=324.33  Aligned_cols=388  Identities=19%  Similarity=0.156  Sum_probs=293.7

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      -...++.+++...++++|+++|+++.   +..    .++||+|+.++++++|+.|..+|++.||.|++.|+|.++++.++
T Consensus        74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~~----~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW  146 (649)
T KOG1179|consen   74 RERRTIAELFLSQVRRQPDKPAIIYE---GPF----QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW  146 (649)
T ss_pred             ccCCcHHHHHHHHHHhCCCccEEEEe---CCC----ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence            45689999999999999999999987   321    58999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      +|++++|++.+.||+++..+.|.|-++.++++.+|++.+..+.+.+.........-.+...+.....         ....
T Consensus       147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~---------~g~~  217 (649)
T KOG1179|consen  147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVP---------DGIE  217 (649)
T ss_pred             HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCC---------chHH
Confidence            9999999999999999999999999999999999999998887766633222222233333322110         0111


Q ss_pred             eHHHHHhcccccccc---CCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecCh
Q 010878          199 SWDEFLHLGKVNEME---ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~---~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  275 (498)
                      ++.+.++...+.+.+   ....+..++++++|||||||.||+++++|.........+...+     +++++|+++..+|+
T Consensus       218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPL  292 (649)
T KOG1179|consen  218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPL  292 (649)
T ss_pred             HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchh
Confidence            233333322222322   2234567899999999999999999999999888887676666     99999999999999


Q ss_pred             HHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010878          276 AHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (498)
Q Consensus       276 ~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (498)
                      +|..|.+. +..++..|+|+++-.+ ++.++++.-.+|++|++...-.+.+-|+.+....-++.                
T Consensus       293 YHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~----------------  356 (649)
T KOG1179|consen  293 YHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQ----------------  356 (649)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcC----------------
Confidence            99999988 7789999999999876 99999999999999999988888888775322211110                


Q ss_pred             HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEeeeccccCcccccccCCCCc
Q 010878          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEM  432 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~l~~~YG~tE~~~~~~~~~~~~~  432 (498)
                                                   ..+|.++  |..+.+++++.|.++||. +|.+.||+||.. ..+++.+.. 
T Consensus       357 -----------------------------HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn-~~~~N~d~~-  403 (649)
T KOG1179|consen  357 -----------------------------HKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGN-SNLVNYDGR-  403 (649)
T ss_pred             -----------------------------ceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCc-ceeeeecCc-
Confidence                                         2678777  888999999999999987 599999999975 445554432 


Q ss_pred             cccCccccC------cCCceEEeeec--------CCCCCCCCCCCCCCeEEE--ecCCC---cccccCCchhhhhh----
Q 010878          433 CMVGTAGPV------SVYSELRLEEV--------PEMGYSPLDDPPCGEVCV--RGKTL---FSGYYKNPDLTRES----  489 (498)
Q Consensus       433 ~~~~s~G~~------~~g~~i~ivd~--------~~~~~~~~~~~~~Gei~v--~g~~v---~~gY~~~~~~~~~~----  489 (498)
                        .|.+|+.      +--+++--+|+        ++|--.+++.||.|.+.-  ....-   |.||.++.+.+++.    
T Consensus       404 --vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rD  481 (649)
T KOG1179|consen  404 --VGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRD  481 (649)
T ss_pred             --cccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHh
Confidence              2444422      11122222221        344445566889996643  23444   89999977777543    


Q ss_pred             -ccCC--ccccC
Q 010878          490 -IIDG--WFHTG  498 (498)
Q Consensus       490 -f~dG--w~~TG  498 (498)
                       |+.|  ||.||
T Consensus       482 VFkkGD~~f~tG  493 (649)
T KOG1179|consen  482 VFKKGDVYFNTG  493 (649)
T ss_pred             hhccCcEEEeeC
Confidence             5334  88887

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.8e-41  Score=349.28  Aligned_cols=334  Identities=18%  Similarity=0.138  Sum_probs=240.8

Q ss_pred             eCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh------HHhhcccccccCCccEEEEecC
Q 010878          108 GANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV------KELLSPDCRSAQRLRVMVCFTS  181 (498)
Q Consensus       108 ~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~vi~~~~  181 (498)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++...      ..+.+... . ...+.++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~   78 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVE-A-APAKAIVLPAA   78 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhh-c-ccceEEEEecc
Confidence            5899999999999999999999999999999999999999999999986431      11111111 1 11222222211


Q ss_pred             CcHHHHHHHhhcCcceeeHHHHHhcccc------ccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhh
Q 010878          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKV------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF  255 (498)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~  255 (498)
                      .....    ........+++++......      .........++++++|+|||||||.||||+++|.+++.+.......
T Consensus        79 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~  154 (499)
T PLN03051         79 GEPVA----VPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH  154 (499)
T ss_pred             CcccC----CccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence            10000    0000012346665532110      0111112356899999999999999999999999988766554444


Q ss_pred             hccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHH
Q 010878          256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA  333 (498)
Q Consensus       256 ~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~  333 (498)
                      +     ++..+|++++.+|++|.+++..++.+++.|+++++.+.  ++..+++.|+++++|+++++|+++..|++.... 
T Consensus       155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~-  228 (499)
T PLN03051        155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAF-  228 (499)
T ss_pred             c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcc-
Confidence            4     67889999999999999998777788999999998863  789999999999999999999999988642100 


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc--CCce
Q 010878          334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFL  411 (498)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--g~~l  411 (498)
                                                        .....++        ++||.+++||+++++++.+++++.+  ++++
T Consensus       229 ----------------------------------~~~~~~~--------~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~  266 (499)
T PLN03051        229 ----------------------------------AMEGLDW--------SKLRVFASTGEASAVDDVLWLSSVRGYYKPV  266 (499)
T ss_pred             ----------------------------------ccccCCc--------hhheEEEecCCCCCHHHHHHHHHhcccccee
Confidence                                              0001122        2899999999999999998887743  4789


Q ss_pred             EeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCC--cccccCCchhhhhh
Q 010878          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL--FSGYYKNPDLTRES  489 (498)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v--~~gY~~~~~~~~~~  489 (498)
                      ++.||+||++..+...........+++|+|.+|++++|+| ++++.++.|.++.|||+|+|+.+  +.|||+++ .+ +.
T Consensus       267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~-~~  343 (499)
T PLN03051        267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HD-KV  343 (499)
T ss_pred             EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-cc-ce
Confidence            9999999987544332222223347899999999999999 88887776645689999999976  58999765 33 33


Q ss_pred             ccCC----------ccccC
Q 010878          490 IIDG----------WFHTG  498 (498)
Q Consensus       490 f~dG----------w~~TG  498 (498)
                      |.+|          ||+||
T Consensus       344 ~~~g~~~~~~~~~~~~~TG  362 (499)
T PLN03051        344 YYKGMPMYGSKGMPLRRHG  362 (499)
T ss_pred             eeecCCccccCCcceeecC
Confidence            4455          68998

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-40  Score=365.77  Aligned_cols=378  Identities=14%  Similarity=0.134  Sum_probs=270.6

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ....++.++|.+.++++||++|+++.    +     +.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~~----~-----~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~  514 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLFD----G-----RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI  514 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            44568999999999999999999864    3     48999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      +||+++|++++|++|.   +++.++++.++++++|++......+.+.       ...+++++.......  .........
T Consensus       515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~--~~~~~~~~~  582 (994)
T PRK07868        515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDL--DLPDDADVI  582 (994)
T ss_pred             HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCccccc--cCCcchhhh
Confidence            9999999999999984   6899999999999999998766654321       134555543211000  000000011


Q ss_pred             eHHHHHhcccccc--ccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010878          199 SWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       199 ~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                      .++++.......+  ....+..++++++|+|| ||||.||++.++|.+...........+     .+.++|++++.+|++
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~  656 (994)
T PRK07868        583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH  656 (994)
T ss_pred             hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence            1111111000000  01112236889999999 578888888888877655444433333     678899999999999


Q ss_pred             HHHHHHHHHH-HHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          277 HILDRVIEEY-FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       277 h~~g~~~~~~-~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      |.+++...+. ++..|+++++.+. +++.+++.|+++++|+++++|++++.+++...                       
T Consensus       657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~-----------------------  713 (994)
T PRK07868        657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPA-----------------------  713 (994)
T ss_pred             HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcC-----------------------
Confidence            9999987554 4556666666655 99999999999999999999999998865210                       


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC-CceEeeeccccCcccccccCCCCcc
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMC  433 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~l~~~YG~tE~~~~~~~~~~~~~~  433 (498)
                                    ....++        ++||.++  |+.+++++.+++.+.|+ +++++.||+||++.+... ..  ..
T Consensus       714 --------------~~~~~~--------~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~-~~--~~  766 (994)
T PRK07868        714 --------------FVLHGN--------HPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN-VS--GA  766 (994)
T ss_pred             --------------CccCCC--------CceEEEe--cCCCCHHHHHHHHHHhCchheeeeeecccccccccc-cC--CC
Confidence                          000011        3789876  34599999999999886 789999999998754432 21  23


Q ss_pred             ccCccccCcCCc-eEEeeec----------CCCCCCCCCCCCCCeEEEecCCCcccccCCchhhh--hhc--cCCccccC
Q 010878          434 MVGTAGPVSVYS-ELRLEEV----------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR--ESI--IDGWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~~g~-~i~ivd~----------~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~--~~f--~dGw~~TG  498 (498)
                      .++++|+|+||+ +++|.+.          ++|....++.|+.|||+++++..    + +++.+.  ..|  .||||+||
T Consensus       767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TG  841 (994)
T PRK07868        767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTE  841 (994)
T ss_pred             CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEecc
Confidence            448999999998 7777521          23311234567999999999864    3 344332  235  38999998

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-39  Score=325.46  Aligned_cols=395  Identities=21%  Similarity=0.240  Sum_probs=306.8

Q ss_pred             CCCcccHHHH-HHHHHHcC-CCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 010878           38 DSDLNTAWDI-FSMSVQKY-PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (498)
Q Consensus        38 ~~~~~tl~~~-l~~~~~~~-pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~  115 (498)
                      +....|+.+. +++..... ++.+++++.   +..++....+||.|+.+.+.++|..|.+.|+++||+|++++|+.++++
T Consensus        59 ~g~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~  135 (626)
T KOG1175|consen   59 PGAFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAV  135 (626)
T ss_pred             ccchhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHH
Confidence            3445555544 45554444 788999887   433333345999999999999999999889999999999999999999


Q ss_pred             HHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcc---------cc---cccCCccEEEEecCCc
Q 010878          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP---------DC---RSAQRLRVMVCFTSLT  183 (498)
Q Consensus       116 ~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~---~~~~~~~~vi~~~~~~  183 (498)
                      ++++||.++|++..++....+++++...+..++++++++.+......+..         ..   .........+.+....
T Consensus       136 ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  215 (626)
T KOG1175|consen  136 IAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN  215 (626)
T ss_pred             HHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc
Confidence            99999999999999999999999999999999999999987543221111         00   0000111111111110


Q ss_pred             HHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHh-HHHHhhhhhhhhccccCC
Q 010878          184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQFEDK  262 (498)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~-l~~~~~~~~~~~~~~~~~  262 (498)
                                  .-..|+++.... ....++.+.+.+++.+|+|||||||.||++.+++.. ++..+......+     +
T Consensus       216 ------------~d~~~~~~~~~a-~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~-----d  277 (626)
T KOG1175|consen  216 ------------RDLFWSLELKKA-SPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF-----D  277 (626)
T ss_pred             ------------ccccHHHHhhhc-CCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec-----c
Confidence                        023455554443 223336667889999999999999999999999875 455555545455     8


Q ss_pred             CCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC---ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhc
Q 010878          263 MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (498)
Q Consensus       263 ~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~  338 (498)
                      ++++|++++...+.|+.+.+. ++.+|..|+++++.+.   ++..+++.+.+|++|+++..|+.++.+.+.....     
T Consensus       278 ~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~-----  352 (626)
T KOG1175|consen  278 LQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQED-----  352 (626)
T ss_pred             CCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcccc-----
Confidence            999999999999999999998 5568999999999875   8899999999999999999999999875532211     


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEeeecc
Q 010878          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGL  417 (498)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~l~~~YG~  417 (498)
                                                    ....++        ++||.+.++|++++++...++.+.++. +|++.||+
T Consensus       353 ------------------------------~~~~~~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~q  394 (626)
T KOG1175|consen  353 ------------------------------VTSYSL--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQ  394 (626)
T ss_pred             ------------------------------cccccc--------ceEEEEeecCccCCcchHHHHHHhcCccchhhceee
Confidence                                          111111        289999999999999999999999987 69999999


Q ss_pred             ccCcccccccCCCC-ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec--C-CCcccccCCchhhhhhc-c-
Q 010878          418 TETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--K-TLFSGYYKNPDLTRESI-I-  491 (498)
Q Consensus       418 tE~~~~~~~~~~~~-~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~-~v~~gY~~~~~~~~~~f-~-  491 (498)
                      ||+|+.++...... ..++++.|.|.+|+.+.|.| ++|+..+... +.|+|+++.  | +++++||+|++....++ . 
T Consensus       395 tEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k  472 (626)
T KOG1175|consen  395 TETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKK  472 (626)
T ss_pred             eccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhccc
Confidence            99999999888877 66779999999999999999 7888776654 789999987  3 88999999999444443 3 


Q ss_pred             -CCccccC
Q 010878          492 -DGWFHTG  498 (498)
Q Consensus       492 -dGw~~TG  498 (498)
                       .|+|.||
T Consensus       473 ~pg~y~tG  480 (626)
T KOG1175|consen  473 FPGYYFTG  480 (626)
T ss_pred             CCceEEec
Confidence             6788787

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-37  Score=313.54  Aligned_cols=281  Identities=13%  Similarity=0.070  Sum_probs=237.1

Q ss_pred             eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEE
Q 010878           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (498)
Q Consensus        75 ~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~  154 (498)
                      +++||.||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..++++++++++++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            58999999999999999985 68999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCC
Q 010878          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (498)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~  234 (498)
                      ++....                  ..                         .       .....++++++++|||||||.
T Consensus        86 ~~~~~~------------------~~-------------------------~-------~~~~~~~~~~~i~~TSGtTG~  115 (414)
T PRK08308         86 GESDFT------------------KL-------------------------E-------AVNYLAEEPSLLQYSSGTTGE  115 (414)
T ss_pred             cCcccc------------------cc-------------------------c-------CCCCCCCCceEEEECCCCCCC
Confidence            763100                  00                         0       001246789999999999999


Q ss_pred             CceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhC
Q 010878          235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELK  312 (498)
Q Consensus       235 pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~  312 (498)
                      ||+|+++|.++.+.+..+...+     ....+|+++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.+++++
T Consensus       116 PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~  190 (414)
T PRK08308        116 PKLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTP  190 (414)
T ss_pred             CcEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhC
Confidence            9999999999999888777666     7788899999999999999876 7788999999988876 9999999999999


Q ss_pred             CcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcC
Q 010878          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (498)
Q Consensus       313 ~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G  392 (498)
                      +|+++++|.++..+.+....                                                 ..+++.++++|
T Consensus       191 ~t~~~~~P~~~~~l~~~~~~-------------------------------------------------~~~l~~~~~~G  221 (414)
T PRK08308        191 QHILYAVPLMLHILGRLLPG-------------------------------------------------TFQFHAVMTSG  221 (414)
T ss_pred             CeEEEcCHHHHHHHHhcCCc-------------------------------------------------cccccEEEEcc
Confidence            99999999999988652100                                                 02678899999


Q ss_pred             CCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec
Q 010878          393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG  472 (498)
Q Consensus       393 ~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g  472 (498)
                      +++++++.+++++. +.++++.||+||++.+.....   ...++++|+|+|++++++.+ +        .++.|||++++
T Consensus       222 ~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~---~~~~~~~G~p~~~~~~~~~~-~--------~~~~gel~v~~  288 (414)
T PRK08308        222 TPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICPD---MKSHLDLGNPLPHVSVSAGS-D--------ENAPEEIVVKM  288 (414)
T ss_pred             CCCCHHHHHHHHHh-CChhhhccCccccCCeeecCC---CCCCCccCccCCCeEEEEec-C--------CCCCceEEEEc
Confidence            99999999999886 678999999999986443221   22347899999999999976 3        23579999986


Q ss_pred             C
Q 010878          473 K  473 (498)
Q Consensus       473 ~  473 (498)
                      .
T Consensus       289 ~  289 (414)
T PRK08308        289 G  289 (414)
T ss_pred             C
Confidence            4

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.3e-32  Score=290.64  Aligned_cols=370  Identities=21%  Similarity=0.203  Sum_probs=295.2

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      +...++.+.+...+...|++.|+.+.    +     ..+||.++..+++++|+.|++.|+.+++.|+++.+.+.++++.+
T Consensus       224 ~~~~~i~~~f~~~a~~~p~~~a~~~~----~-----~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~  294 (642)
T COG1020         224 PLRLTIHLLFEEQAATTPDAVALVRG----G-----QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVAL  294 (642)
T ss_pred             CccchHHHHHHHHHHhCCCceeEecC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHH
Confidence            34478999999999999999888763    2     48999999999999999999999999999999998899999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      +|++++|+.++|+++.++.+.+..+++++++..+++...........     +.    +.++...               
T Consensus       295 l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~---------------  350 (642)
T COG1020         295 LAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGL-----PG----LALDDAL---------------  350 (642)
T ss_pred             HHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccC-----Cc----ccccccc---------------
Confidence            99999999999999999999999999999999999983322111000     00    1111100               


Q ss_pred             eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                       ..    .. ..........+++.+|++|||||||.||||..+|+++.+.+......+     ....+|+++...++.+.
T Consensus       351 -~~----~~-~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD  419 (642)
T COG1020         351 -SE----IP-DTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFD  419 (642)
T ss_pred             -cc----CC-ccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccc
Confidence             00    00 000001233568999999999999999999999999999777776666     88899999999999888


Q ss_pred             HHHHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      .....++.++..|+++++.+.    ++..+.+.++++++|++..+|.++..++........ .+                
T Consensus       420 ~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~-~~----------------  482 (642)
T COG1020         420 ASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDL-IS----------------  482 (642)
T ss_pred             hhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccc-cC----------------
Confidence            888889999999999998764    899999999999999999999999988753110000 00                


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc--CCceEeeeccccCcccccccCCCCc
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEM  432 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--g~~l~~~YG~tE~~~~~~~~~~~~~  432 (498)
                                                ..+.+|.+++||+.++.++...+....  ...+.+.||.||+...+........
T Consensus       483 --------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~  536 (642)
T COG1020         483 --------------------------PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAE  536 (642)
T ss_pred             --------------------------CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccc
Confidence                                      002489999999999999999887765  4689999999996665554432221


Q ss_pred             cc-cCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          433 CM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       433 ~~-~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      .. ...+|+|++++.+.|.| +....+|.+  ..||+++.|.++..||+++++.+.+.| .+.+|+||
T Consensus       537 ~~~~~piG~p~~n~~~~ild-~~~~~~p~g--v~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tg  601 (642)
T COG1020         537 LESRVPIGRPVANTQLYILD-QGLRPLPLG--VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTG  601 (642)
T ss_pred             cCCCCCcceeeCCCeEEEEC-CCCCcCCCC--CCeeeEECCcchhhhhcCChhhhHHHhhhccCccCC
Confidence            11 36899999999999999 777766666  789999999999999999999999999 43588887

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.95  E-value=6.6e-26  Score=206.76  Aligned_cols=223  Identities=15%  Similarity=0.035  Sum_probs=163.4

Q ss_pred             HHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHHHHcCC
Q 010878           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSL  126 (498)
Q Consensus        48 l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~  126 (498)
                      |...++.+|+++|+++.   ++.++..+++||+||.++++++|..|++ .|+++||+|+|+++|+++++++++|++++|+
T Consensus         2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~   78 (227)
T TIGR03089         2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV   78 (227)
T ss_pred             hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            56778889999999864   3322122579999999999999999998 7999999999999999999999999999999


Q ss_pred             eEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhc
Q 010878          127 ICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL  206 (498)
Q Consensus       127 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (498)
                      +++|+|             .++++++|++++....+.      ..  +.++.+.+....... .........++.+.+..
T Consensus        79 v~vp~n-------------~s~a~~~v~~~~~~~~~~------~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  136 (227)
T TIGR03089        79 EVVLAG-------------DPDADVVVTGPDRLAAAA------GS--GEVVALSLDPLGRRV-AGELPPGVIDFAPEVRV  136 (227)
T ss_pred             EEEeCC-------------CCCCCEEEeCcchhhhcc------cC--CceEEEeccccccCC-CCCCCCcccchhhhhhc
Confidence            999995             689999999988766542      11  233333210000000 00000112355555543


Q ss_pred             cccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHH-HH
Q 010878          207 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EE  285 (498)
Q Consensus       207 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~  285 (498)
                      ......+.....++|+++++||||+         +|.+++.+.    ..+     ++.++|+++ .+|++|.+|+.. ++
T Consensus       137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~~~  197 (227)
T TIGR03089       137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLATLL  197 (227)
T ss_pred             cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHHHH
Confidence            2121111113456899999999986         566665554    223     788999999 999999999976 77


Q ss_pred             HHHHcCcEEEEeCC-ChHhHHHHHhhhCCc
Q 010878          286 YFFRRGASVGYYHG-DLNALRDDLMELKPT  314 (498)
Q Consensus       286 ~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t  314 (498)
                      .+|+.|+++++.+. ++..+++.|+++|+|
T Consensus       198 ~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       198 APLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             HHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            88999999998876 999999999999997

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.94  E-value=2.9e-26  Score=226.32  Aligned_cols=200  Identities=26%  Similarity=0.317  Sum_probs=162.0

Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 010878          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY  297 (498)
Q Consensus       218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~  297 (498)
                      .++++++++|||||||.||+|+++|.++..........       +...++++..+|++|..++..++.++..|+++++.
T Consensus        33 ~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~-------~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~  105 (358)
T PRK07824         33 IDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR-------LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVEL  105 (358)
T ss_pred             CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc-------cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEec
Confidence            46899999999999999999999999999887765443       33567889999999999998888889999998873


Q ss_pred             C----CChHhHHHHHhhhC--CcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHH
Q 010878          298 H----GDLNALRDDLMELK--PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL  371 (498)
Q Consensus       298 ~----~~~~~~~~~i~~~~--~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (498)
                      .    .++..+++.+++++  .++...+|..+..++.....                                      .
T Consensus       106 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~--------------------------------------~  147 (358)
T PRK07824        106 DVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA--------------------------------------T  147 (358)
T ss_pred             CcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc--------------------------------------c
Confidence            2    28999999999998  45666778777655431000                                      0


Q ss_pred             HHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeee
Q 010878          372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE  451 (498)
Q Consensus       372 ~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd  451 (498)
                      .++        +++|.+++||+++++++.+++.+ +++++++.||+||++..+           ...|+|++|++++|.+
T Consensus       148 ~~~--------~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~-----------~~~G~~~~g~~v~i~~  207 (358)
T PRK07824        148 AAL--------AELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGC-----------VYDGVPLDGVRVRVED  207 (358)
T ss_pred             CCc--------ccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCc-----------CcCceeCCCCEEEecC
Confidence            011        38999999999999999999886 499999999999987543           2358999999999944


Q ss_pred             cCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       452 ~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                                    |||+++|+.++.||+++++.+  .| .+|||+||
T Consensus       208 --------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TG  239 (358)
T PRK07824        208 --------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTD  239 (358)
T ss_pred             --------------CEEEEecCccccccCCCcccc--cccCCCceecc
Confidence                          999999999999999988743  35 78999998

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.93  E-value=8.8e-24  Score=215.30  Aligned_cols=377  Identities=14%  Similarity=0.105  Sum_probs=263.7

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      .++.++|+.++..+||.+|+...   ++.+..-.++||.+|..++.+++..|... -+++||+|++++++++|++++++|
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~  846 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA  846 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence            78999999999999999999987   77777778999999999999999999977 589999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCCh------hHHHHHHhhcCccEEEEcCchhHHhhcccccccC---CccEEEEecCCcHHHHHHHh
Q 010878          121 CNALSLICVPLYDTLGP------GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ---RLRVMVCFTSLTAEQKEMAV  191 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~------~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~vi~~~~~~~~~~~~~~  191 (498)
                      |+.+|++++|+.|.-..      ..+..+++..+++.|+++......+++.......   ....++.+.+...       
T Consensus       847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~-------  919 (1363)
T KOG3628|consen  847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE-------  919 (1363)
T ss_pred             HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch-------
Confidence            99999999999876532      3577788999999999998766655443221111   1122222222221       


Q ss_pred             hcCcceeeHHHHHhcccc--ccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEE
Q 010878          192 QTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (498)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (498)
                             +|..-..+..+  ...++.......+|++-+.--++|.--++.++|.++++.+...++.+     .+.+..-+
T Consensus       920 -------t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl  987 (1363)
T KOG3628|consen  920 -------TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPL  987 (1363)
T ss_pred             -------hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCce
Confidence                   01110111001  11122223567899999999999999999999999999999999988     66666666


Q ss_pred             EEecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHH
Q 010878          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (498)
Q Consensus       270 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (498)
                      +...+.+-+.|+.. ++..++.|.+.++++.     ++..|+..|.+|++.-++.+-..+..+.+++..+.+....    
T Consensus       988 ~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~---- 1063 (1363)
T KOG3628|consen  988 LGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSK---- 1063 (1363)
T ss_pred             EEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhh----
Confidence            66666666666665 8888999999887763     8999999999999999999988888887766555433221    


Q ss_pred             HHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEE-cCCCCCHHHHHHHHHhc---CC---ceEeeec
Q 010878          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVIS-GGAPLSTEVEEFLRVTC---CA---FLVQGYG  416 (498)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~-~G~~l~~~~~~~~~~~~---g~---~l~~~YG  416 (498)
                                                ...+.        ++  .|++ .-+.....+..-|.+.|   |.   .+--.|+
T Consensus      1064 --------------------------~gnn~--------s~--s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys 1107 (1363)
T KOG3628|consen 1064 --------------------------RGNNT--------SS--SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYS 1107 (1363)
T ss_pred             --------------------------hhccc--------cc--ceeeecCCccHHHHHHHHHHHHHHcCCChhhhccccc
Confidence                                      00111        11  3333 33344444555555544   22   1223333


Q ss_pred             cccCcccccccCCC--------------Cc------------cccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEE
Q 010878          417 LTETCGPTTVCFPD--------------EM------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV  470 (498)
Q Consensus       417 ~tE~~~~~~~~~~~--------------~~------------~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v  470 (498)
                      +-=--.++.....+              +.            -.....|...+++++.|++ ++.. .|+..|+.||||+
T Consensus      1108 ~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn-PEtk-~pc~dge~GEIW~ 1185 (1363)
T KOG3628|consen 1108 SRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN-PETK-GPCRDGELGEIWV 1185 (1363)
T ss_pred             ccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC-Cccc-cccccCCcceEEe
Confidence            22211121111000              00            0113458889999999999 6665 5777889999999


Q ss_pred             ecCCCcccccCC
Q 010878          471 RGKTLFSGYYKN  482 (498)
Q Consensus       471 ~g~~v~~gY~~~  482 (498)
                      +|.+.+.+|+..
T Consensus      1186 ~S~hnA~~~~~~ 1197 (1363)
T KOG3628|consen 1186 NSAHNASCSFTI 1197 (1363)
T ss_pred             cccccccccccc
Confidence            999999988755

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.89  E-value=5.1e-22  Score=200.19  Aligned_cols=217  Identities=19%  Similarity=0.175  Sum_probs=154.1

Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH-HHHHHHHHHcCcEEEE
Q 010878          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD-RVIEEYFFRRGASVGY  296 (498)
Q Consensus       218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g-~~~~~~~l~~G~~~~~  296 (498)
                      +.++++++++||||||.||++.++|.++..........+.+  .++.++|++++..++.+..+ +...+.++..|++++.
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~--~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  150 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRA--AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP  150 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHH--cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence            45678889999999999999999999987664433222111  16778899988766544333 3335567888999887


Q ss_pred             eCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHH
Q 010878          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (498)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (498)
                      .+. ++..+++.|+++++|+++++|+++..|++..........                                     
T Consensus       151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~-------------------------------------  193 (422)
T TIGR02155       151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA-------------------------------------  193 (422)
T ss_pred             cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc-------------------------------------
Confidence            665 789999999999999999999999998764432110000                                     


Q ss_pred             HHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCccc-ccccCCCCccccCccccCc--CCceEEeeec
Q 010878          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVS--VYSELRLEEV  452 (498)
Q Consensus       376 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~-~~~~~~~~~~~~~s~G~~~--~g~~i~ivd~  452 (498)
                            ..+||.++++|+++++++.+.+++.||+++++.||+||+++. +......     ...|.++  +++.++|+| 
T Consensus       194 ------~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~-----~~~g~~~~~~~~~~eivd-  261 (422)
T TIGR02155       194 ------QTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE-----TQDGLHIWEDHFYPEIID-  261 (422)
T ss_pred             ------cCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc-----cCCCceEecCeeEEEEEC-
Confidence                  027999999999999999999999999999999999998532 2221111     1123233  467788998 


Q ss_pred             CCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ++++ .+++.|+.|||++++.            +.+.|..+||+||
T Consensus       262 ~~~g-~~v~~Ge~Gelvvt~~------------~~~~~p~~ry~TG  294 (422)
T TIGR02155       262 PHTG-EVLPDGEEGELVFTTL------------TKEALPVIRYRTR  294 (422)
T ss_pred             CCCC-CCCCCCCeeEEEEecC------------CccccceeeEEcC
Confidence            4332 3445669999999973            2233456777776

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.84  E-value=3.6e-20  Score=182.53  Aligned_cols=166  Identities=18%  Similarity=0.121  Sum_probs=131.3

Q ss_pred             CCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCC--CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEE
Q 010878          220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT--VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY  296 (498)
Q Consensus       220 ~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~  296 (498)
                      ++.++++|||||||.||+|.++|.++.+.+..+...+     ++.  +.|++++.+|++|.+|+.. ++.++..|+++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~  169 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ  169 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence            4578999999999999999999999998887776655     443  4468999999999999865 6778999999988


Q ss_pred             eCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHH
Q 010878          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (498)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (498)
                      .+. ++..+++.++.+  |+++++|.+++.+.+..    .                                     ++ 
T Consensus       170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~-------------------------------------~l-  205 (386)
T TIGR02372       170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----Y-------------------------------------RL-  205 (386)
T ss_pred             cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----c-------------------------------------CC-
Confidence            765 778888887654  89999999999885420    0                                     01 


Q ss_pred             HHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEeeeccccCcccccccCCCCccccCccccCcCCceEEe
Q 010878          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  449 (498)
Q Consensus       376 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~i  449 (498)
                             +++|. ++||+++++++.+.+++. +. .+++.||+||+++++....      +++.|+++|+.++++
T Consensus       206 -------~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~------~~~~~~~~p~~~~~~  265 (386)
T TIGR02372       206 -------PGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA------PDDPFRLLPDLACFA  265 (386)
T ss_pred             -------Cccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC------CCCCcccCCCccccC
Confidence                   26775 678999999999999885 64 6999999999987654432      145678889887765

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.81  E-value=6.1e-19  Score=178.12  Aligned_cols=202  Identities=18%  Similarity=0.163  Sum_probs=147.5

Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEE
Q 010878          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY  296 (498)
Q Consensus       218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~  296 (498)
                      +.++++.+.+||||||.||+|.++|.++..........+..  .++.++|+++...|+.+..+... .+.++..|++++.
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~--~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~  161 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVS--QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP  161 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHH--cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence            45678899999999999999999999988766554332211  26788999999998877666544 4556788887653


Q ss_pred             eCCChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHH
Q 010878          297 YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK  376 (498)
Q Consensus       297 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (498)
                      . ......++.|+++++|.++++|..+..+++.+.......                                   .   
T Consensus       162 ~-~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~-----------------------------------~---  202 (445)
T TIGR03335       162 E-GKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDP-----------------------------------A---  202 (445)
T ss_pred             C-CchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------c---
Confidence            3 344567899999999999999998887765433211000                                   0   


Q ss_pred             HHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCC
Q 010878          377 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG  456 (498)
Q Consensus       377 ~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~  456 (498)
                           ..+||.+++||+++++++.+++++.||+++++.||+||++. +..+...     .....+.+.+.+.|+| ++++
T Consensus       203 -----~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~-~~~c~~~-----~g~h~~~d~~~vEIvD-p~~~  270 (445)
T TIGR03335       203 -----ESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTM-CGECQAV-----AGLHVPEDLVHLDVYD-PRHQ  270 (445)
T ss_pred             -----cCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhh-eEEecCC-----CCccccCCceEEEEEc-CCCC
Confidence                 02799999999999999999999999999999999999862 2222111     1233334568899999 6654


Q ss_pred             CCCCCCCCCCeEEEecC
Q 010878          457 YSPLDDPPCGEVCVRGK  473 (498)
Q Consensus       457 ~~~~~~~~~Gei~v~g~  473 (498)
                       .+++.|+.|||++.+-
T Consensus       271 -~~vp~Ge~GELvvT~L  286 (445)
T TIGR03335       271 -RFLPDGECGRIVLTTL  286 (445)
T ss_pred             -CCCcCCCceEEEEEec
Confidence             4456779999999875

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.64  E-value=8.1e-15  Score=150.68  Aligned_cols=388  Identities=15%  Similarity=0.107  Sum_probs=265.2

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEeCCc--hhHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS-ALRASGAEPGCRVGIYGANC--PQWVE  116 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~-~L~~~gv~~g~~V~i~~~n~--~~~~~  116 (498)
                      .+..+..+++++-..++...|.+..   |.++. -..+||..+..++.++|+ .|-+.|..++|+|.++...+  .++++
T Consensus        92 a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~i  167 (1363)
T KOG3628|consen   92 ALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLI  167 (1363)
T ss_pred             hhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhh
Confidence            4456677778777888888999988   76666 689999999999999999 56677999999999988877  89999


Q ss_pred             HHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010878          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (498)
Q Consensus       117 ~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (498)
                      ..++|...|.+++|+++..+-+++..+++-...+++++...............            .......+.....+.
T Consensus       168 sl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~------------s~~k~v~~w~t~~~k  235 (1363)
T KOG3628|consen  168 SLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV------------SLAKAVAWWKTNDFK  235 (1363)
T ss_pred             hhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc------------cHHHHHHhhhccccc
Confidence            99999999999999999999999999999999999999887665543322100            000000000000000


Q ss_pred             -eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhc---------------ccc
Q 010878          197 -PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---------------QFE  260 (498)
Q Consensus       197 -~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~---------------~~~  260 (498)
                       .+..+.       ...  +...-. .++|-||++++|.--+++.+|. ++.+.+.+....+               ...
T Consensus       236 ~~~~~~k-------~~~--P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v  304 (1363)
T KOG3628|consen  236 GNYTKDK-------IKK--PRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHV  304 (1363)
T ss_pred             ceeehhh-------ccC--Cceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhc
Confidence             111110       000  111122 7899999999999999999998 6655554433321               111


Q ss_pred             CCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHH
Q 010878          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (498)
Q Consensus       261 ~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~  335 (498)
                      .+....++++.........|++. ++.++..|.+.+.++.    .|..+...+.++|.+++..-...+......++..  
T Consensus       305 ~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~--  382 (1363)
T KOG3628|consen  305 FPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQED--  382 (1363)
T ss_pred             cccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCC--
Confidence            24566778888887788888887 8899999999998875    7888999999999999988877776655433221  


Q ss_pred             hhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc----C---
Q 010878          336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC----C---  408 (498)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~----g---  408 (498)
                                                     +.. .+++..-.....++||.|.+....+..+.......++    |   
T Consensus       383 -------------------------------p~a-~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~  430 (1363)
T KOG3628|consen  383 -------------------------------PKA-TLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETN  430 (1363)
T ss_pred             -------------------------------ccc-ccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcC
Confidence                                           100 0011111111225999999999998887654443332    2   


Q ss_pred             ---------------CceEeeeccccCcccccccCCCCc-----------------------------cccCccccCcCC
Q 010878          409 ---------------AFLVQGYGLTETCGPTTVCFPDEM-----------------------------CMVGTAGPVSVY  444 (498)
Q Consensus       409 ---------------~~l~~~YG~tE~~~~~~~~~~~~~-----------------------------~~~~s~G~~~~g  444 (498)
                                     .-....=+++|.+......+....                             .....+|+..||
T Consensus       431 ~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g  510 (1363)
T KOG3628|consen  431 VKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPG  510 (1363)
T ss_pred             cceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceeccc
Confidence                           112233344677665554443110                             012456777776


Q ss_pred             -ceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc
Q 010878          445 -SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  490 (498)
Q Consensus       445 -~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f  490 (498)
                       +.+.|++  ++....|..+++|||||.++++..+||.-+..|...|
T Consensus       511 ~~t~~vv~--~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F  555 (1363)
T KOG3628|consen  511 DATLAVVN--PDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTF  555 (1363)
T ss_pred             ceEEEEeC--CCcccccccCcceeEEEecCCcccceeeccccccceE
Confidence             5555655  5556777788999999999999999999888887776

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.59  E-value=2e-14  Score=151.97  Aligned_cols=350  Identities=18%  Similarity=0.089  Sum_probs=217.9

Q ss_pred             cCCceecCcCCCCCCCCC------CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHH
Q 010878           21 VGPVYRNLLASNGFPSVD------SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR   94 (498)
Q Consensus        21 ~~~~~r~~~~~~~~~~~~------~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~   94 (498)
                      .+-.++.....|.+|+..      ..+.++.+.+.+.+.+.|.+.+..+.+. ...++.....||.+....++.+++.|.
T Consensus         9 ~~~~~~~~~~~d~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~   87 (1032)
T KOG1178|consen    9 PSLSLITYRQEDSLPDETKQIGFEQFMGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLV   87 (1032)
T ss_pred             ccceeeccccccccCChhhhhhhhhhhcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhh
Confidence            344455555556666433      2455677788999999999998887654 334555568999999999999999999


Q ss_pred             HcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHh--hcccccccCC
Q 010878           95 ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL--LSPDCRSAQR  172 (498)
Q Consensus        95 ~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~~~~~~~~~~  172 (498)
                      ..|...|+.|++++..+.++++..++++++|..+.+++|.++..++...+.+.-....-...+...++  .....+....
T Consensus        88 ~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~~~~~  167 (1032)
T KOG1178|consen   88 SLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDILLNSLFP  167 (1032)
T ss_pred             hcccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHHhhcccc
Confidence            99999999999999999999999999999999999999999822222211111111100101100000  0000000000


Q ss_pred             ccEEEEecCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhh
Q 010878          173 LRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV  252 (498)
Q Consensus       173 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~  252 (498)
                      ...+...                 .-.+..+...  .......-..++..+++.||||+||.||+|.-+|..+.....++
T Consensus       168 ~~sv~~~-----------------~~~f~~~~~~--~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~  228 (1032)
T KOG1178|consen  168 KLSVETI-----------------ADSFQMVLHN--EDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWM  228 (1032)
T ss_pred             ccchhhc-----------------cchhhhhhcc--CCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhc
Confidence            0000000                 0011111111  11111222356778999999999999999999999999999997


Q ss_pred             hhhhccccCCCCCCcEEEEecChHHHHHHHHHHH-HHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHH
Q 010878          253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY-FFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIH  327 (498)
Q Consensus       253 ~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~-~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~  327 (498)
                      ...+     ....++++-.....+.......... .|..|+.+..+..    ++..+...+++|+++..+.+|++.++++
T Consensus       229 ~~~f-----~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~  303 (1032)
T KOG1178|consen  229 FTTF-----PPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLL  303 (1032)
T ss_pred             cccC-----CcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhh
Confidence            7766     6777776533333333333333444 4555665555432    5799999999999999999999998887


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc
Q 010878          328 EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC  407 (498)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~  407 (498)
                      ...........                           +.    ...++..... +.|+...++|++...++...+...+
T Consensus       304 ~~~~~~~~~l~---------------------------~~----~~~~dl~~~~-~~Lkl~~~~~ep~~v~l~~s~~~~~  351 (1032)
T KOG1178|consen  304 AILTTSLPLLE---------------------------HA----FSLSDLLTKR-SCLKLVVLGGEPLLVSLYTSTFDLL  351 (1032)
T ss_pred             hhcCcchhhhh---------------------------hh----hhcccccccc-hhheeeeecCCccchhhhhhhhhcc
Confidence            64332100000                           00    0000000000 3789999999999999888655544


Q ss_pred             C-CceEeeeccccCccccccc
Q 010878          408 C-AFLVQGYGLTETCGPTTVC  427 (498)
Q Consensus       408 g-~~l~~~YG~tE~~~~~~~~  427 (498)
                      - .-...-|++++..+...+.
T Consensus       352 ~~~~~~~~y~s~~~~~~~s~~  372 (1032)
T KOG1178|consen  352 AEIFFGLPYLSTDPTGLVSYD  372 (1032)
T ss_pred             cceeeeecccCCCCccceeHH
Confidence            2 2222338999888776654

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.57  E-value=1.8e-13  Score=132.07  Aligned_cols=206  Identities=21%  Similarity=0.180  Sum_probs=149.2

Q ss_pred             CCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH-HHHHHHHHHHHHHcCcEE
Q 010878          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA-HILDRVIEEYFFRRGASV  294 (498)
Q Consensus       216 ~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~-h~~g~~~~~~~l~~G~~~  294 (498)
                      ....++...+--||||||.|+.+.++...+......+...+..  .+...+|++....-+. +..|+..-+.+-..|+++
T Consensus        86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~--~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~v  163 (438)
T COG1541          86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYS--AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATV  163 (438)
T ss_pred             cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHH--ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEE
Confidence            3455667779999999999999999999888887777665522  2677788777665522 222333333445567776


Q ss_pred             EEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHH
Q 010878          295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA  373 (498)
Q Consensus       295 ~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (498)
                      +=... +.+.-++.++.+++|++.++|..+..|.+.+...+.  .                              .+.  
T Consensus       164 ip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~--~------------------------------~~~--  209 (438)
T COG1541         164 IPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGI--D------------------------------PDK--  209 (438)
T ss_pred             EccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCC--C------------------------------hhh--
Confidence            64444 889999999999999999999999999887665431  0                              111  


Q ss_pred             HHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecC
Q 010878          374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVP  453 (498)
Q Consensus       374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~  453 (498)
                               .+||.++.|+|+++++..+.+.++||+..++.||+||..+.........    ......-+..-+.|+| |
T Consensus       210 ---------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~----~glhi~eD~~~~Ei~d-P  275 (438)
T COG1541         210 ---------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTER----NGLHIWEDHFIFEIVD-P  275 (438)
T ss_pred             ---------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCcccccccc----cCCCcchhhceeeeec-C
Confidence                     3899999999999999999999999999999999999977642211110    1122334567888999 4


Q ss_pred             CCCCCCCCCCCCCeEEEec
Q 010878          454 EMGYSPLDDPPCGEVCVRG  472 (498)
Q Consensus       454 ~~~~~~~~~~~~Gei~v~g  472 (498)
                      +.+ .+++.|+.|||.+..
T Consensus       276 ~t~-e~l~dge~GelV~T~  293 (438)
T COG1541         276 ETG-EQLPDGERGELVITT  293 (438)
T ss_pred             CcC-ccCCCCCeeEEEEEe
Confidence            444 344566899999875

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.10  E-value=2.7e-09  Score=105.88  Aligned_cols=147  Identities=18%  Similarity=0.151  Sum_probs=100.1

Q ss_pred             EEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEe--cChHHHHHHHHHHHHHHc-CcEEEEe--
Q 010878          223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF--LPLAHILDRVIEEYFFRR-GASVGYY--  297 (498)
Q Consensus       223 a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~--~pl~h~~g~~~~~~~l~~-G~~~~~~--  297 (498)
                      ..+..||||||.|-.+..+..............+.+.  ++..++++...  .+. +.+.      .+.. ...+...  
T Consensus       102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~--g~~~g~r~a~~~~~~~-~ly~------~~~~~~~~~~~~~l  172 (430)
T TIGR02304       102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPD--GLFAKHRIAFFLRADN-NLYQ------SVNNRWISLDFFDL  172 (430)
T ss_pred             EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCcc--ccccCCcEEEEEccCh-hHHH------HHHhccceeeecCC
Confidence            4567899999999999999987654443332222111  33444444333  222 1111      1111 1112222  


Q ss_pred             CCChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHH
Q 010878          298 HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV  377 (498)
Q Consensus       298 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (498)
                      ..+.+..++.|++++|+.+.+.|+.+..|++.......  .                                       
T Consensus       173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l--~---------------------------------------  211 (430)
T TIGR02304       173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL--T---------------------------------------  211 (430)
T ss_pred             CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC--C---------------------------------------
Confidence            13788999999999999999999999999875543210  0                                       


Q ss_pred             HHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCccccc
Q 010878          378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT  425 (498)
Q Consensus       378 ~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~  425 (498)
                           .+++.++++||+++++..+.+++.||+++++.||+|| |.++.
T Consensus       212 -----~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~  253 (430)
T TIGR02304       212 -----IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLAS  253 (430)
T ss_pred             -----CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEE
Confidence                 1689999999999999999999999999999999999 54443

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.41  E-value=1.8e-05  Score=77.10  Aligned_cols=205  Identities=18%  Similarity=0.178  Sum_probs=115.5

Q ss_pred             CCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHH---HHHH--HHHHHHHHcCc
Q 010878          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH---ILDR--VIEEYFFRRGA  292 (498)
Q Consensus       218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h---~~g~--~~~~~~l~~G~  292 (498)
                      +.+++..++.||||||.+--+.+.+..+......+...+..........-.++...|-..   ..+.  ...+..+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            345677889999999998666776666666555544443211111122223344444321   1111  11222344555


Q ss_pred             EEEEeCC--ChHhHHHHH----hhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCch
Q 010878          293 SVGYYHG--DLNALRDDL----MELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  366 (498)
Q Consensus       293 ~~~~~~~--~~~~~~~~i----~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (498)
                      ...+-..  +.+.++..+    .+.++.++++.|.++-.+++.+++......                            
T Consensus       167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~----------------------------  218 (365)
T PF04443_consen  167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR----------------------------  218 (365)
T ss_pred             eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc----------------------------
Confidence            5444222  555555544    467788999999988777665443321111                            


Q ss_pred             hhHHHHHHHHHHHHhCCceeEEEEcC------CCCC-HHHHHHHHHhcCC----ceEeeeccccCcccccccCCCCcccc
Q 010878          367 PLADLLAFRKVKARLGGRLRLVISGG------APLS-TEVEEFLRVTCCA----FLVQGYGLTETCGPTTVCFPDEMCMV  435 (498)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~lr~i~~~G------~~l~-~~~~~~~~~~~g~----~l~~~YG~tE~~~~~~~~~~~~~~~~  435 (498)
                             +.       +..+.+-.||      +.++ +++.+.+.+.||+    .+++.|||||.......+....    
T Consensus       219 -------L~-------~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~----  280 (365)
T PF04443_consen  219 -------LP-------KGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH----  280 (365)
T ss_pred             -------CC-------CCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCc----
Confidence                   00       1334555555      2365 4677788888887    6999999999875444332211    


Q ss_pred             CccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCC
Q 010878          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL  475 (498)
Q Consensus       436 ~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v  475 (498)
                          ...|-- +.|.| +++ ..+++.|+.|-|.+-.+..
T Consensus       281 ----~~~p~w-V~iRD-p~t-l~~~~~Ge~Gli~vidl~~  313 (365)
T PF04443_consen  281 ----FHVPPW-VIIRD-PET-LEPLPPGETGLIQVIDLAN  313 (365)
T ss_pred             ----ccCCCe-EEEEC-CCC-CcCCCCCCeeEEEEEcccc
Confidence                122222 66778 443 4677778999998877643

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=94.81  E-value=0.18  Score=49.90  Aligned_cols=114  Identities=10%  Similarity=-0.016  Sum_probs=85.4

Q ss_pred             CCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch--hHHHHHHHHHHcCCeEeecCCCCChhHHHHH
Q 010878           68 DGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFI  143 (498)
Q Consensus        68 d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~  143 (498)
                      .|.+|.+  .-+|+.+....+..+|+.|...|..+||+|..+..-+.  .-+-..+|+.++|+.++|+.+.. -+.-..+
T Consensus        99 SGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-~~~~~~l  177 (438)
T COG1541          99 SGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-TERQLEL  177 (438)
T ss_pred             CCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-HHHHHHH
Confidence            3444443  46899999999999999999999999999998777321  22678899999999999998844 3555678


Q ss_pred             HhhcCccEEEEcCchhHHhhcccccc-----cCCccEEEEecCC
Q 010878          144 LDHAEIDFVFVQDKKVKELLSPDCRS-----AQRLRVMVCFTSL  182 (498)
Q Consensus       144 l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~~  182 (498)
                      +++.++.++.+....+..+.+.+.+.     ...++.++.....
T Consensus       178 ~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~  221 (438)
T COG1541         178 MKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEP  221 (438)
T ss_pred             HHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEeccc
Confidence            89999999999998776655544332     2355555555444

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=88.43  E-value=5.6  Score=40.44  Aligned_cols=112  Identities=13%  Similarity=0.025  Sum_probs=76.2

Q ss_pred             CCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh--HHHHHHHHHHcCCeEeecCCCCChhHHHHH
Q 010878           68 DGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVPLYDTLGPGAVNFI  143 (498)
Q Consensus        68 d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~  143 (498)
                      .|.+|.++  .+|..++...+...+..+...|+++||++.++.+.+..  .....+++...|+.++|...   .+....+
T Consensus        95 SGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~  171 (445)
T TIGR03335        95 SGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRI  171 (445)
T ss_pred             CCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHH
Confidence            45555543  57889998888888888888899999999998876543  23456788899998877653   2345677


Q ss_pred             HhhcCccEEEEcCchhHHhhccccc-----ccCCccEEEEecCC
Q 010878          144 LDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL  182 (498)
Q Consensus       144 l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~vi~~~~~  182 (498)
                      ++..++.+++........+.+...+     ....++.++.-++.
T Consensus       172 i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~  215 (445)
T TIGR03335       172 IESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGES  215 (445)
T ss_pred             HHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCC
Confidence            8889999988866554433322111     11356666666544

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=87.82  E-value=5.6  Score=40.03  Aligned_cols=114  Identities=17%  Similarity=0.107  Sum_probs=78.0

Q ss_pred             CCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch--hHHHHHHHHHHcCCeEeecCCCCChhHHHHH
Q 010878           68 DGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFI  143 (498)
Q Consensus        68 d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~  143 (498)
                      .|.+|.++  .+|..++......++..+...|+++||++....+...  ......++....|+.+++++... .+.+-..
T Consensus        84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~  162 (422)
T TIGR02155        84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL  162 (422)
T ss_pred             CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence            56666654  3566677666666777787889999999887665442  22334677889999999887764 4778889


Q ss_pred             HhhcCccEEEEcCchhHHhhcccccc-----cCCccEEEEecCC
Q 010878          144 LDHAEIDFVFVQDKKVKELLSPDCRS-----AQRLRVMVCFTSL  182 (498)
Q Consensus       144 l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~~  182 (498)
                      ++..++.+++........+.+.....     ...++.++.-+..
T Consensus       163 i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~  206 (422)
T TIGR02155       163 IQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEP  206 (422)
T ss_pred             HHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCc
Confidence            99999999999988766554332211     1245566655544

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=84.19  E-value=7.2  Score=40.80  Aligned_cols=30  Identities=27%  Similarity=0.299  Sum_probs=25.0

Q ss_pred             CCCCeEEEEeccCCCC-CCceEEeccHhHHH
Q 010878          218 QPFNICTIMYTSGTSG-DPKGVVLTHETIAT  247 (498)
Q Consensus       218 ~~~~~a~i~~TSGtTG-~pK~v~~sh~~l~~  247 (498)
                      .++.+.+...|||||| .+|.+.+++..+-.
T Consensus        99 ~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~  129 (612)
T PLN02620         99 CSKPISEFLTSSGTSGGERKLMPTIEEELGR  129 (612)
T ss_pred             CCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence            4566778999999997 59999999987655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	498
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-14
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		3e-14
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		5e-14
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		8e-13
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		3e-12
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		4e-12
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		1e-11
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-10
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-10
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-10
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		2e-10
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-10
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-09
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-09
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		2e-09
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		7e-09
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		7e-09
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		9e-09
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		1e-07
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		8e-07
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		2e-05
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		6e-05
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-04
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		5e-04
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		8e-04
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		9e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 132/304 (43%), Gaps = 73/304 (24%)
Query: 209 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS------GVDLFLDQFEDK 262
           ++ +EI    P ++  + Y+SGT+G PKGV+LTH+ + T V+        +L+       
Sbjct: 217 IDSVEI---SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS---- 269
Query: 263 MTVDDVYLSFLPLAHILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVP 320
              DDV L  LP+ HI     I     R GA++      ++N L + +   K T+   VP
Sbjct: 270 ---DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP 326
Query: 321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
            +   I +  +                  KY L+                          
Sbjct: 327 PIVLAIAKSSETE----------------KYDLS-------------------------- 344
Query: 381 LGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT---TVCFPDEMCMV- 435
               +R+V SG APL  E+E+ +      A L QGYG+TE  GP    ++ F  E   V 
Sbjct: 345 ---SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVLAMSLGFAKEPFPVK 400
Query: 436 -GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG 493
            G  G V   +E+++ + P+ G S   + P GE+C+RG  +  GY  NP  T E+I  DG
Sbjct: 401 SGACGTVVRNAEMKIVD-PDTGDSLSRNQP-GEICIRGHQIMKGYLNNPAATAETIDKDG 458
Query: 494 WFHT 497
           W HT
Sbjct: 459 WLHT 462

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 124/499 (24%), Positives = 193/499 (38%), Gaps = 120/499 (24%)
Query: 32  NGFPS--VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKT-YKEVYEEVLQ 88
           N FPS  +D +LN  WD    +        + G +  V       V +T Y EVY+   +
Sbjct: 7   NAFPSTMMDEELNL-WDFLERAAA------LFGRKEVVSRLHTGEVHRTTYAEVYQRARR 59
Query: 89  IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAE 148
           ++  LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE
Sbjct: 60  LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 119
Query: 149 IDFVFVQDKK---VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205
            D V + D     + E +  + ++ Q   VM       A +  +A +             
Sbjct: 120 -DKVLLFDPNLLPLVEAIRGELKTVQHFVVM----DEKAPEGYLAYEEA----------- 163
Query: 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI------ATFVSGVDLFLDQF 259
           LG+  +   +P +    C + YT+GT+G PKGVV +H  +      A+ V G  L     
Sbjct: 164 LGEEADPVRVPER--AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL----- 216
Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD---LMEL----K 312
               +  DV L  +P+ H     +  +     A++      L   R D   L+EL     
Sbjct: 217 ----SEKDVVLPVVPMFH-----VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEG 267
Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
            T  AGVP V+  + + ++     L+ LR                               
Sbjct: 268 VTFTAGVPTVWLALADYLESTGHRLKTLR------------------------------- 296
Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---- 428
                        RLV+ G A   + +  F R+     + QGYGLTET       F    
Sbjct: 297 -------------RLVVGGSAAPRSLIARFERMGVE--VRQGYGLTETSPVVVQNFVKSH 341
Query: 429 ------PDEMCMVGTAG-PVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYY 480
                  +++ +    G P+ +   +RL    E G   P D    GEV ++G  +  GYY
Sbjct: 342 LESLSEEEKLTLKAKTGLPIPL---VRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYY 398
Query: 481 KNPDLTRESII-DGWFHTG 498
            N + TR ++  DG+F TG
Sbjct: 399 GNEEATRSALTPDGFFRTG 417

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 114/281 (40%), Gaps = 60/281 (21%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG V+    +AT +   D   D ++   T +DV +  LPL H+   V+ 
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTL---DALADAWQ--WTGEDVLVQGLPLFHVHGLVLG 214
Query: 285 EYF-FRRGASVGYY-----HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                RRG SV +       G    L D       T+L GVP ++ +I E +    E   
Sbjct: 215 ILGPLRRGGSVRHLGRFSTEGAARELNDGA-----TMLFGVPTMYHRIAETLPADPE--- 266
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                                        LA  LA            RL++SG A L   
Sbjct: 267 -----------------------------LAKALAG----------ARLLVSGSAALPVH 287
Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             E +       +++ YG+TET   T+V   D     GT G      ELRL E      +
Sbjct: 288 DHERIAAATGRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTPIA 346
Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
            LD    GE+ VRG  LF+ Y   PD T  +   DG+F TG
Sbjct: 347 ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTG 387

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 169/434 (38%), Gaps = 77/434 (17%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 57  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H  +A  F  
Sbjct: 177 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSH 226
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 227 ARDPI---FGNQIAPDTAILSVVPF---------HHGFGMFTTLGY-------------- 260
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
               L++G   V                 L  R  + L+   L      YK + A  +  
Sbjct: 261 ----LISGFRVV-----------------LMYRFEEELFLRSL----QDYKIQSALLVPT 295
Query: 371 LLAFRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
           L +F      +       L  + SGGAPLS EV E   +      + QGYGLTET     
Sbjct: 296 LFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 355
Query: 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
           +  P      G  G V  + E ++ ++ + G + L     GE+ VRG  + SGY  NP+ 
Sbjct: 356 IT-PKGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELSVRGPMIMSGYVNNPEA 412
Query: 486 TRESI-IDGWFHTG 498
           T   I  DGW H+G
Sbjct: 413 TNALIDKDGWLHSG 426

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 117/283 (41%), Gaps = 71/283 (25%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 228
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 272
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
                               R+    A+L A            R  I+GGAP+    E  
Sbjct: 273 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 300
Query: 403 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 455
           +++     +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E 
Sbjct: 301 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 360
Query: 456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           G         GEV ++   L   Y+  P+ TR++  +GWF TG
Sbjct: 361 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTG 395

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 117/283 (41%), Gaps = 71/283 (25%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 214
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 215 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 258
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
                               R+    A+L A            R  I+GGAP+    E  
Sbjct: 259 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 286
Query: 403 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 455
           +++     +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E 
Sbjct: 287 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 346
Query: 456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
           G         GEV ++   L   Y+  P+ TR++  +GWF TG
Sbjct: 347 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTG 381

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 22/126 (17%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV-------- 435
           LR++ SGGAPL  E+E+ +R     A L QGYG+TE  GP        MC+         
Sbjct: 299 LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE-AGPVLA-----MCLAFAKEPFDI 352
Query: 436 --GTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 491
             G  G V   +E+++ + PE G S P + P  GE+C+RG  +  GY  +P+ T  +I  
Sbjct: 353 KPGACGTVVRNAEMKIVD-PETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDK 409
Query: 492 DGWFHT 497
           +GW HT
Sbjct: 410 EGWLHT 415

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 152/425 (35%), Gaps = 81/425 (19%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+++      ++ S L   G   G RV I   NC + +E + A   +  I +P       
Sbjct: 33  THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP------- 85
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             VN+ L+  EI FV         +   D R      V     SL   +K  A+  G  P
Sbjct: 86  --VNYRLNADEIAFVLGDGAPSVVVAGTDYRDI----VAGVLPSLGGVKKAYAIGDGSGP 139
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
           ++   F  L              +   I++T+   G P+G +++   +    S +   +D
Sbjct: 140 FA--PFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSL---VD 194
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR-GASVGYYHGDLNALRDDLMELKPTLL 316
            +  ++T  DV L  LPL H+    +     +  GASV     D      D+   K T++
Sbjct: 195 AW--RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVM 252
Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK 376
           A                  E  P+   I D                 +A+P A L + R 
Sbjct: 253 A------------------EFAPMLGNILD-----------------QAAP-AQLASLRA 276
Query: 377 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMV 435
           V              G      +E F      A     +G +ET G +T   + D     
Sbjct: 277 VT-------------GLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR---- 319
Query: 436 GTAGPVSVYSEL--RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
               P S    L  R   V +    PL     GE+ +RG T+F GY+ N   T+ +  +G
Sbjct: 320 ----PKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNG 375
Query: 494 WFHTG 498
           W HTG
Sbjct: 376 WHHTG 380

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 170/442 (38%), Gaps = 61/442 (13%)
Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG   F +   G  V  +Y E  E+   +  AL+  G     R+ +   NC ++   + A
Sbjct: 39  LGAIAFTNAVTG--VDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIA 96
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
              + +   P  +      +   L  ++   VF   K + ++++   ++   ++ +V   
Sbjct: 97  GLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQ-KTVTTIKTIVILD 155
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S    +    + T IK  +   F        +E+   +   +  IM +SG++G PKGV L
Sbjct: 156 SKVDYRGYQCLDTFIKRNTPPGF-QASSFKTVEV--DRKEQVALIMNSSGSTGLPKGVQL 212
Query: 241 THETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           THE I T F    D     + ++++     L+ +P  H         +   G  V     
Sbjct: 213 THENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTK 269
Query: 300 -DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
            D       L + K T +  VP +F  +++                 + L KY L+    
Sbjct: 270 FDEETFLKTLQDYKCTSVILVPTLFAILNKS----------------ELLNKYDLS---- 309
Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGL 417
                                     L  + SGGAPLS EV E   R      + QGYGL
Sbjct: 310 -------------------------NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGL 344
Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
           TET     +  P+     G +G V    + ++ ++       L     GEVCV+G  L  
Sbjct: 345 TETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMK 401
Query: 478 GYYKNPDLTRESII-DGWFHTG 498
           GY  NP+ T+E I  +GW HTG
Sbjct: 402 GYVNNPEATKELIDEEGWLHTG 423

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 170/442 (38%), Gaps = 61/442 (13%)
Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG   F +   G  V  +Y E  E+   +  AL+  G     R+ +   NC ++   + A
Sbjct: 39  LGAIAFTNAVTG--VDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIA 96
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
              + +   P  +      +   L  ++   VF   K + ++++   ++   ++ +V   
Sbjct: 97  GLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQ-KTVTTIKTIVILD 155
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S    +    + T IK  +   F        +E+   +   +  IM +SG++G PKGV L
Sbjct: 156 SKVDYRGYQCLDTFIKRNTPPGF-QASSFKTVEV--DRKEQVALIMNSSGSTGLPKGVQL 212
Query: 241 THETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           THE I T F    D     + ++++     L+ +P  H         +   G  V     
Sbjct: 213 THENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTK 269
Query: 300 -DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
            D       L + K T +  VP +F  +++                 + L KY L+    
Sbjct: 270 FDEETFLKTLQDYKCTSVILVPTLFAILNKS----------------ELLNKYDLS---- 309
Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGL 417
                                     L  + SGGAPLS EV E   R      + QGYGL
Sbjct: 310 -------------------------NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGL 344
Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
           TET     +  P+     G +G V    + ++ ++       L     GEVCV+G  L  
Sbjct: 345 TETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMK 401
Query: 478 GYYKNPDLTRESII-DGWFHTG 498
           GY  NP+ T+E I  +GW HTG
Sbjct: 402 GYVNNPEATKELIDEEGWLHTG 423

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 114/283 (40%), Gaps = 62/283 (21%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G  KG  L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G  RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTKETTGHXRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAKTGHAVLERYGXTETNXNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGK 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
             P  D   G + V+G  +F GY++ P+ T+     DG+F TG
Sbjct: 341 ELPRGD--IGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITG 381

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 111/282 (39%), Gaps = 55/282 (19%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTG
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 366
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+G
Sbjct: 367 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 366
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+G
Sbjct: 367 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 313 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 371
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+G
Sbjct: 372 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 426

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 115/283 (40%), Gaps = 62/283 (21%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTG 498
             P  D   G + V G  +F GY++ P+ T  E   DG+F TG
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITG 381

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 115/283 (40%), Gaps = 62/283 (21%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTG 498
             P  D   G + V G  +F GY++ P+ T  E   DG+F TG
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITG 381

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 115/283 (40%), Gaps = 62/283 (21%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTG 498
             P  D   G + V G  +F GY++ P+ T  E   DG+F TG
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITG 381

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 151/426 (35%), Gaps = 85/426 (19%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +          +P+   L  
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++++L           D     LL+      Q   +    T+L  + +    +    P
Sbjct: 551 DRISYML----------ADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDP 600
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            +              I P  P     IMYTSGT+G PKG + TH  I   V  VD    
Sbjct: 601 AT-------------AIDPNDP---AYIMYTSGTTGKPKGNITTHANIQGLVKHVDYM-- 642
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            F D+    D +LS           +  Y F    +  +Y   LNA R  + + + TLL 
Sbjct: 643 AFSDQ----DTFLS-----------VSNYAFD-AFTFDFYASMLNAARLIIAD-EHTLLD 685
Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
                 E++ + I +    +      +F+ L      WM                     
Sbjct: 686 T-----ERLTDLILQENVNVMFATTALFNLLTDAGEDWMK-------------------- 720
Query: 378 KARLGGRLRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEM 432
                  LR ++ GG   S   V + LR+     L+  YG TE     T       PD +
Sbjct: 721 ------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI 774
Query: 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID 492
             +    P+S  S   L E  ++   P      GE+C+ G  +  GY    DLT+E  I+
Sbjct: 775 SSLPIGKPISNASVYILNEQSQL--QPFG--AVGELCISGMGVSKGYVNRADLTKEKFIE 830
Query: 493 GWFHTG 498
             F  G
Sbjct: 831 NPFKPG 836

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPL+ EV E   +      + QGYGLTET     +         G  G V 
Sbjct: 342 NLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVV 401
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
            +   ++ ++ + G + L     GE+CV+G  +  GY  NP+ T   I  DGW H+G
Sbjct: 402 PFFSAKIVDL-DTGKT-LGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSG 456

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/432 (19%), Positives = 164/432 (37%), Gaps = 70/432 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y    P
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY----P 97
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +LD A             + +  + +    L +       TA++     +    P
Sbjct: 98  PAQEKLLDKA-------------QRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIP 144
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               E + L + +  +    +  +I  + YTSG++  PKGV ++H  +   +  ++    
Sbjct: 145 AIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNL---LDNLNKIFT 201
Query: 258 QFEDKMTVDDVYLSFLPLAH-------ILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
            F      + +  S+LP  H       IL  +         +   +    L+ L+  + +
Sbjct: 202 SFH--XNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLK-HITK 258
Query: 311 LKPTLLAG--------VPRVFEKIHEGIK-----KALEELRPLRRRIFDALYKYKLAWMN 357
            K T+           V R+ E+  EG+       A     P+R    +  Y+   A+  
Sbjct: 259 YKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQ---AFKE 315
Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
            G+++    P   L               L+++GG P S+    +  +T      Q + +
Sbjct: 316 FGFRKEAFYPCYGL-----------AEATLLVTGGTPGSS----YKTLTLAKEQFQDHRV 360
Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
                 +    P    +V +  P+    E+++ +   +   P D    GE+ V+  ++  
Sbjct: 361 HFADDNS----PGSYKLVSSGNPI---QEVKIIDPDTL--IPCDFDQVGEIWVQSNSVAK 411
Query: 478 GYYKNPDLTRES 489
           GY+  P+ TR +
Sbjct: 412 GYWNQPEETRHA 423

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 145/423 (34%), Gaps = 73/423 (17%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V GYG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHT 497
           + T
Sbjct: 381 YRT 383

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 148/423 (34%), Gaps = 73/423 (17%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNAYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHT 497
           + T
Sbjct: 381 YRT 383

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 149/423 (35%), Gaps = 73/423 (17%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVIEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P+ T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATAEKLQDGW 380
Query: 495 FHT 497
           + T
Sbjct: 381 YRT 383

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 144/423 (34%), Gaps = 73/423 (17%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHT 497
           + T
Sbjct: 381 YRT 383

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 144/423 (34%), Gaps = 73/423 (17%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHT 497
           + T
Sbjct: 381 YRT 383

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	498
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-60
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-57
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-57
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-56
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	4e-54
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	3e-52
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	3e-52
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-51
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	7e-51
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-50
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-47
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	4e-47
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-44
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	4e-44
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	4e-42
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	4e-35
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	3e-28
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	3e-27
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	6e-25
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-23
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	5e-09
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	7e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	8e-09
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	4e-08
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-08
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	3e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-07
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	6e-06
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	3e-05
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-04

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  205 bits (525), Expect = 2e-60
 Identities = 89/468 (19%), Positives = 148/468 (31%), Gaps = 91/468 (19%)

Query: 38  DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG 97
           D  +     +        P                     TY ++     +    L A G
Sbjct: 12  DDKMKNIGWMLRQRATVSPR------LQAYVEPSTDVRM-TYAQMNALANRCADVLTALG 64

Query: 98  AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157
              G RV +   N  ++         L  + VP+   L    V+FIL  +    V     
Sbjct: 65  IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA- 123

Query: 158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP 217
                          +R                V   I   S  E L     +E   +  
Sbjct: 124 ---PSAP----VIDAIR--------AQADPPGTVTDWIGADSLAERLRSAAADE-PAVEC 167

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
              +   IMYTSGT+G PKGVV THE++ +  S     +D     +   D  L  LP+ H
Sbjct: 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID-----VRYRDRLLLPLPMFH 222

Query: 278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +   RG ++      D   +   ++E +  +   VP +              
Sbjct: 223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL------------- 269

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                               N             +    +         R  I+GGAP+ 
Sbjct: 270 --------------------NF------------MRQVPEFAELDAPDFRYFITGGAPMP 297

Query: 397 TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL-----E 450
             + +          VQGY LTE+CG  T+   ++ +   G+AG  ++++++ +      
Sbjct: 298 EALIKIYAAKNIEV-VQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV 356

Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
                          GEV ++   L   Y+  P+ TR++  +GWF TG
Sbjct: 357 IRE---------HGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTG 395

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  197 bits (504), Expect = 2e-57
 Identities = 81/461 (17%), Positives = 146/461 (31%), Gaps = 98/461 (21%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D++  +   +P       R             T+++      ++ S L   G   G RV 
Sbjct: 10  DVYRRNAALFPD------RTAF--MVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVA 60

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           I   NC + +E + A   +  I +P+   L    + F+L       V       +++++ 
Sbjct: 61  ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVA-GTDYRDIVAG 119

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
              S   ++                   G     +  F  L              +   I
Sbjct: 120 VLPSLGGVKKAYA--------------IGDGSGPFAPFKDLASDTPFSAPEFGAADGFVI 165

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           ++T+   G P+G +++   +    S +          +T  DV L  LPL H+    +  
Sbjct: 166 IHTAAVGGRPRGALISQGNLLIAQSSLVDAWR-----LTEADVNLGMLPLFHVTGLGLML 220

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
              + G +       D      D+   K T++A    +   I       L++  P     
Sbjct: 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNI-------LDQAAP----- 268

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR 404
                                   A L             LR V     P +  +E F  
Sbjct: 269 ------------------------AQL-----------ASLRAVTGLDTPET--IERFEA 291

Query: 405 VTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-----EEVP--EMGY 457
               A     +G +ET G +T     +     +AG    +  + +       +P  E+  
Sbjct: 292 TCPNATFWATFGQSETSGLSTFAPYRD--RPKSAGRPLFWRTVAVVDAEDRPLPPGEV-- 347

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
                   GE+ +RG T+F GY+ N   T+ +  +GW HTG
Sbjct: 348 --------GEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTG 380

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  197 bits (504), Expect = 2e-57
 Identities = 83/463 (17%), Positives = 128/463 (27%), Gaps = 94/463 (20%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           ++   +  + P +  L                T+ E+   V  + + L A G  P  RV 
Sbjct: 6   EMLRRAATRAPDHCAL-----AVP-ARGLRL-THAELRARVEAVAARLHADGLRPQQRVA 58

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   N    V A+ A + L  +            +N  L  AE+  +             
Sbjct: 59  VVAPNSADVVIAILALHRLGAVPAL---------LNPRLKSAELAELIK----------- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ----PFN 221
                      V               +G +     + +  G+              P  
Sbjct: 99  RGEM----TAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQ 154

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--L 279
              I YTSGT+G PK  ++      + V  +     Q   +    +V L  +PL H+   
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFM---STQVGLRHGRHNVVLGLMPLYHVVGF 211

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
             V+       G  V             + + + T L   P                   
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHL---------------- 255

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
                                       LA   A      +L   LR V   GA +   V
Sbjct: 256 ---------------DA-----------LAAAAAHAGSSLKL-DSLRHVTFAGATMPDAV 288

Query: 400 -EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
            E   +       V  YG TE      +  P      GT      +SE+R+  V   G  
Sbjct: 289 LETVHQHLPGEK-VNIYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRI--VRIGGGV 341

Query: 459 PLDDPP--CGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTG 498
                    GE+ V    + F GY   P  T E + DGW+ T 
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTS 384

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  194 bits (496), Expect = 2e-56
 Identities = 74/458 (16%), Positives = 140/458 (30%), Gaps = 87/458 (18%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
                  Q+            +    G   + TY+ +Y E   +   L    A    RVG
Sbjct: 5   FWLYKQAQQNGH------HIAI--TDGQESY-TYQNLYCEASLLAKRL---KAYQQSRVG 52

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +Y  N  Q +  + AC   ++    +   L P  +   +   ++  +F        L   
Sbjct: 53  LYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL----PLELR 108

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
             +      +      +T               S +  +     + +        +I +I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           M+TSGT+G  K V  T         G    L         D  +LS LP+ HI    +  
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLG-----FDRDTNWLSVLPIYHISGLSVLL 223

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                G +V      +   +   +   + T ++ VP+    +          ++      
Sbjct: 224 RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL----------MQQGLHEP 273

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFL 403
           ++                                      L+ ++ GGA LS  + E  L
Sbjct: 274 YN--------------------------------------LQKILLGGAKLSATMIETAL 295

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL--EEVPEMGYSPL 460
           +      +   +G+TETC       P+       T G  S   ++++             
Sbjct: 296 QYNLP--IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH----- 348

Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
                GE+ ++G  + +GY    D    +  +G+F+TG
Sbjct: 349 -----GELMIKGANVMNGYLYPTD-LTGTFENGYFNTG 380

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  188 bits (480), Expect = 4e-54
 Identities = 96/434 (22%), Positives = 152/434 (35%), Gaps = 95/434 (21%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+     ++ + L A G + G RV        + +    A      + +PL      
Sbjct: 30  SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL------ 83

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N      E+D+              D       +++VC  S       +A + G   
Sbjct: 84  ---NTAYTLHELDYFIT-----------DAEP----KIVVCDPSKRDGIAAIAAKVGATV 125

Query: 198 Y--------SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
                    S  +            +     ++  I+YTSGT+G  KG +L+H+ +A+  
Sbjct: 126 ETLGPDGRGSLTDAAAGAS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS 184

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDD 307
             +  +        T DDV +  LP+ H   L        F RG+ +     D + +  D
Sbjct: 185 LTLVDYWR-----FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL-D 238

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
           LM  + T+L GVP  +                                            
Sbjct: 239 LMA-RATVLMGVPTFY-------------------------------------------- 253

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTV 426
              LL   ++     G +RL ISG APL  +   E+   T  A L + YG+TET    T 
Sbjct: 254 -TRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVL-ERYGMTETN-MNTS 310

Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
              D   + G  GP       R+    PE G   L     G + V+G  +F GY++ P+ 
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARV--TDPETG-KELPRGDIGMIEVKGPNVFKGYWRMPEK 367

Query: 486 TRESII-DGWFHTG 498
           T+     DG+F TG
Sbjct: 368 TKSEFRDDGFFITG 381

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  184 bits (470), Expect = 3e-52
 Identities = 103/480 (21%), Positives = 167/480 (34%), Gaps = 86/480 (17%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  +A       +++Y     +    F +   G     +Y E  E+   +  AL
Sbjct: 15  KPFYPIEEGSAGTQLRKYMERYAKLGAI---AFTNAVTGVDY--SYAEYLEKSCCLGKAL 69

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   NC ++   + A   + +   P  +      +   L  ++   VF
Sbjct: 70  QNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
                  KV  +     ++   ++ +V   S    +              D F+      
Sbjct: 130 SSKKGLDKVITV----QKTVTTIKTIVILDSKVDYR---------GYQCLDTFIKRNTPP 176

Query: 211 EMEI--LPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
             +         +    +  IM +SG++G PKGV LTHE I T  S     +  + ++++
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVS 234

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
                L+ +P  H         +   G  V      D       L + K T +  VP   
Sbjct: 235 PGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP--- 291

Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
                               +F  L K +L        +       DL            
Sbjct: 292 ---------------T----LFAILNKSELL------NKY------DL-----------S 309

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   R      + QGYGLTET     +  P+     G +G V 
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETT-SAIIITPEGDDKPGASGKVV 368

Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
              + ++  +  +     L   P   GEVCV+G  L  GY  NP+ T+E I  +GW HTG
Sbjct: 369 PLFKAKV--IDLDTK-KSL--GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  184 bits (470), Expect = 3e-52
 Identities = 85/494 (17%), Positives = 161/494 (32%), Gaps = 110/494 (22%)

Query: 33  GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWK----TYKEVYEEVL 87
           GFPS+     +  D    + +K+        +   +  +            + E+ E   
Sbjct: 10  GFPSLYYPKISLADRIDAAAEKFGE------KTAIISAEPKFPSEFPESMNFLEICEVTK 63

Query: 88  QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA 147
           ++ S +   G   G  VG+   N   +V  + A   ++   VP         +N +    
Sbjct: 64  KLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVP---------INPMYKSF 114

Query: 148 EIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK--------PYS 199
           E++ +             D  +      +V  + L    K +  +TG++          S
Sbjct: 115 ELEHILN-----------DSEA----TTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNS 159

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
             E +  G  +   +      ++  I YT GT+G PKGV+LTH  +A     + +     
Sbjct: 160 LSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG-- 217

Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAG 318
              ++  D  +  +P+ H  +  +       G   V     +   L +++ + K T    
Sbjct: 218 ---LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWA 274

Query: 319 VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378
           VP                  P      + L                         +    
Sbjct: 275 VP------------------P----ALNVLVNTL-------------ESSNKTYDWS--- 296

Query: 379 ARLGGRLRLVISGGAPLSTEVEE-FLRVTCC------AFLVQGYGLTETCGPTTVCFPDE 431
                 L++  +G  P++  + E  L++             Q +G+TE C   T   P  
Sbjct: 297 -----YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351

Query: 432 MCMVGTAGPVSVYSELRLEEV-PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           +    T G      EL++  +  E G    + +   GE+ +RG  +F GY+K     +E 
Sbjct: 352 LDKSTTQGVPMSDIELKV--ISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKENQEC 407

Query: 490 II-----DGWFHTG 498
                    +F TG
Sbjct: 408 WWYDEKGRKFFRTG 421

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  180 bits (460), Expect = 5e-51
 Identities = 85/433 (19%), Positives = 144/433 (33%), Gaps = 83/433 (19%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  SALR  G  P  R+ +   +      A        ++ V     L P
Sbjct: 50  TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L H+    V      + + ++    SA+     +  +     +  +A       
Sbjct: 110 ADYVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAP------ 162

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
             ++E +        +       +I   +Y+SG++G PKG V TH   A      +L+  
Sbjct: 163 -LFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAK 217

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPT 314
                +  +DV  S   L           F    GA+          +A+   L+E +PT
Sbjct: 218 PILG-IAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT 276

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
           +  GVP                           LY                     +L  
Sbjct: 277 VFYGVP--------------------------TLYAN-------------------MLVS 291

Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
             + AR    +R+  S G  L  E+ E F     C  ++ G G TE      +       
Sbjct: 292 PNLPARADVAIRICTSAGEALPREIGERFTAHFGCE-ILDGIGSTEM-LHIFLSNRAGAV 349

Query: 434 MVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
             GT G PV  Y E+ L       VP  E+          G++ ++G +    Y+ N + 
Sbjct: 350 EYGTTGRPVPGY-EIELRDEAGHAVPDGEV----------GDLYIKGPSAAVMYWNNREK 398

Query: 486 TRESIIDGWFHTG 498
           +R + +  W  +G
Sbjct: 399 SRATFLGEWIRSG 411

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  180 bits (458), Expect = 7e-51
 Identities = 89/425 (20%), Positives = 130/425 (30%), Gaps = 97/425 (22%)

Query: 83  YEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNF 142
           Y E+     A  A       RV ++     +   A+ A     +  VPL    G   +  
Sbjct: 51  YAELAAAAGAT-AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAH 109

Query: 143 ILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
           IL  +    V            PD      L  +         +  +             
Sbjct: 110 ILSDSAPSLVLA---------PPDAELPPALGALERVDVDVRARGAVPED---------- 150

Query: 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
                             +   ++YTSGT+G PKG V+    +AT +  +          
Sbjct: 151 -------------GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ----- 192

Query: 263 MTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
            T +DV +  LPL H+  L   I     R G+                +    T+L GVP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR-ELNDGATMLFGVP 251

Query: 321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
            ++ +                                          +A+ L      A+
Sbjct: 252 TMYHR------------------------------------------IAETLPADPELAK 269

Query: 381 LGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG 439
                RL++SG A L     E     T    + + YG+TET    T    D     GT G
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAAATGRRVI-ERYGMTETL-MNTSVRADGEPRAGTVG 327

Query: 440 PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
                 ELRL       +       LD    GE+ VRG  LF+ Y   PD T  +   DG
Sbjct: 328 VPLPGVELRLVEEDGTPIA-----ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDG 382

Query: 494 WFHTG 498
           +F TG
Sbjct: 383 FFRTG 387

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  180 bits (459), Expect = 1e-50
 Identities = 107/480 (22%), Positives = 169/480 (35%), Gaps = 85/480 (17%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  TA +    ++++Y      G   F D      +  TY E +E  +++  A+
Sbjct: 12  APFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYFEMSVRLAEAM 67

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   N  Q+   +     + +   P  D      +   ++ ++   VF
Sbjct: 68  KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL--HLGK 208
           V     +K+  +     +    ++ ++   S T  Q            S   F+  HL  
Sbjct: 128 VSKKGLQKILNVQ----KKLPIIQKIIIMDSKTDYQG---------FQSMYTFVTSHLPP 174

Query: 209 VNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
                   P+ F+    I  IM +SG++G PKGV L H T     S     +  F +++ 
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQII 232

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
            D   LS +P  H         +   G  V   +  +       L + K      VP   
Sbjct: 233 PDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVP--- 289

Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
                               +F    K  L        +       DL            
Sbjct: 290 ---------------T----LFSFFAKSTLI------DKY------DL-----------S 307

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT-SAILITPEGDDKPGAVGKVV 366

Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
            + E ++  V  + G   L       GE+CVRG  + SGY  NP+ T   I  DGW H+G
Sbjct: 367 PFFEAKV--VDLDTG-KTL--GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  171 bits (436), Expect = 1e-47
 Identities = 102/479 (21%), Positives = 177/479 (36%), Gaps = 89/479 (18%)

Query: 34  FPSVD--SDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWKTYKEVYEEVLQIV 90
            P +    +L         ++  +        +P  ++G  G     TY +V     ++ 
Sbjct: 13  LPDIYIPKNLPL-HSYVLENLSNHSS------KPCLINGANGDVY--TYADVELTARRVA 63

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
           S L   G + G  + ++  + P++V A    +    I         P  +      +   
Sbjct: 64  SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            +  Q    +++   D      ++V +C  S                  + E     + N
Sbjct: 124 LLITQACYYEKVK--DFARESDVKV-MCVDSAPDGCL-----------HFSELTQADE-N 168

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E   +   P ++  + Y+SGT+G PKGV+LTH+ + T V+      +        +DV L
Sbjct: 169 EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP-NLYFHSEDVIL 227

Query: 271 SFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             LP+ HI  L+ ++          +     ++ +L   + + K ++   VP        
Sbjct: 228 CVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVP-------- 279

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                     P    +  ++ K               SP  D       K  L   LR++
Sbjct: 280 ----------P----VMMSIAK---------------SPDLD-------KHDLS-SLRMI 302

Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSV 443
            SGGAPL  E+ +        A L QGYG+TE      +C            G  G V  
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362

Query: 444 YSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
            +E+++  V PE G + L  P    GE+C+RG  +  GY  +P+ T  +I  +GW HTG
Sbjct: 363 NAEMKI--VDPETG-ASL--PRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTG 416

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  171 bits (436), Expect = 4e-47
 Identities = 73/443 (16%), Positives = 134/443 (30%), Gaps = 100/443 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ +    +  +LR  G +PG    +   N  +      A   L +  V        
Sbjct: 52  SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL------- 104

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ---KEMAVQTG 194
               F    +E++  +    +   L++    +       +   +   E    + + +   
Sbjct: 105 --ALFSHQRSELNA-YASQIEPALLIADRQHALFSGDDFL--NTFVTEHSSIRVVQLLND 159

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA--TFVSGV 252
              ++  + ++     +    P     +     + GT+G PK +  TH         S  
Sbjct: 160 SGEHNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF----------FRRGASVGYYHGDLN 302
                    + T    YL  +P AH         +          F  G +V     D +
Sbjct: 219 IC-------QFTQQTRYLCAIPAAHN--------YAMSSPGSLGVFLAGGTV-VLAADPS 262

Query: 303 ALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           A       L    +  + A VP                                  W+  
Sbjct: 263 A--TLCFPLIEKHQVNVTALVP--------------------------PAV---SLWLQA 291

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGL 417
             +    + LA               L+L+  GGA LS  +         C  L Q +G+
Sbjct: 292 LIEGESRAQLA--------------SLKLLQVGGARLSATLAARIPAEIGCQ-LQQVFGM 336

Query: 418 TETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476
            E     T        ++ T G P+    E+ +      G +PL     G +  RG   F
Sbjct: 337 AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWV--ADAEG-NPLPQGEVGRLMTRGPYTF 393

Query: 477 SGYYKNPDLTRESII-DGWFHTG 498
            GYYK+P     +   +G++ +G
Sbjct: 394 RGYYKSPQHNASAFDANGFYCSG 416

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  163 bits (414), Expect = 2e-44
 Identities = 64/485 (13%), Positives = 134/485 (27%), Gaps = 123/485 (25%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
               I ++ VQ +P          +    G     +Y E+      + + L   G   G 
Sbjct: 31  PLTRILTVGVQSHPH------SLAI--ICGERQL-SYIELDRLSTNLATRLAEKGLGKGD 81

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
              +   N  ++     A     ++ +            +     E++  F++  + K L
Sbjct: 82  TALVQLPNVAEFYIVFFALLKAGVVVLN---------ALYSHRQYELNA-FIKQIQPKLL 131

Query: 163 LSPDCRSAQRLRVMV--CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
           +             +        + +  + +      +   +++       ++       
Sbjct: 132 IGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPAD 191

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            +     + G++G PK +  TH         S            +  +   L  LP  H 
Sbjct: 192 EVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-------GLNSNTRLLCALPAPHN 244

Query: 279 LDRVIEEYF----------FRRGASVGYYHGDLNALRDDLMEL----KPTLLAGVPRVFE 324
                   F             G  V     +      +   +    +  + + VP    
Sbjct: 245 --------FMLSSPGALGVLHAGGCV-VMAPNPEP--LNCFSIIQRHQVNMASLVPSAV- 292

Query: 325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 384
                                       + W+      +    +  L             
Sbjct: 293 ----------------------------IMWLE--KAAQYKDQIQSL------------- 309

Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG-PV 441
            +L+  GGA     +  +   V  C  L Q +G+ E          D    +  T G P+
Sbjct: 310 -KLLQVGGASFPESLARQVPEVLNCK-LQQVFGMAEGL-VNYTRLDDSDEQIFTTQGRPI 366

Query: 442 SVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
           S   E+++      EVP  E+          G +  RG   F GYY++P+   +    D 
Sbjct: 367 SSDDEIKIVDEQYREVPEGEI----------GMLATRGPYTFCGYYQSPEHNSQVFDEDN 416

Query: 494 WFHTG 498
           ++++G
Sbjct: 417 YYYSG 421

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  165 bits (421), Expect = 4e-44
 Identities = 104/485 (21%), Positives = 175/485 (36%), Gaps = 93/485 (19%)

Query: 34  FPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSA 92
            P +   +  +  D    ++ ++     L     ++G  G     TY +V+    QI + 
Sbjct: 52  LPDIYIPNHLSLHDYIFQNISEFATKPCL-----INGPTGHVY--TYSDVHVISRQIAAN 104

Query: 93  LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152
               G      V +   NCP++V +  A +              P  +      +    +
Sbjct: 105 FHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLI 164

Query: 153 FVQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 209
             +     K+K L     ++   + ++    + +    E  +        + E       
Sbjct: 165 ITEARYVDKIKPL-----QNDDGVVIVCIDDNESVPIPEGCL-------RFTELTQSTT- 211

Query: 210 NEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV- 265
              E++     +   +  + Y+SGT+G PKGV+LTH+ +   V+ V   +D     +   
Sbjct: 212 EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFH 268

Query: 266 -DDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRV 322
            DDV L  LP+ HI  L+ ++        A +     ++N L + +   K T+   VP  
Sbjct: 269 SDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP-- 326

Query: 323 FEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLG 382
                           P    I  A+ K               S   +       K  L 
Sbjct: 327 ----------------P----IVLAIAK---------------SSETE-------KYDLS 344

Query: 383 GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGT 437
             +R+V SG APL  E+ +        A L QGYG+TE      +             G 
Sbjct: 345 -SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGA 403

Query: 438 AGPVSVYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
            G V   +E+++  V P+ G   L       GE+C+RG  +  GY  NP  T E+I  DG
Sbjct: 404 CGTVVRNAEMKI--VDPDTG-DSL--SRNQPGEICIRGHQIMKGYLNNPAATAETIDKDG 458

Query: 494 WFHTG 498
           W HTG
Sbjct: 459 WLHTG 463

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  156 bits (398), Expect = 4e-42
 Identities = 90/481 (18%), Positives = 153/481 (31%), Gaps = 119/481 (24%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAI--TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V                 +EI + F +  +    
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVF---------ALPSHRSSEITY-FCEFAEAAAY 126

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPF 220
           + PD  S    R +     + ++     ++  I     +EFL L  ++   +++   +  
Sbjct: 127 IIPDAYSGFDYRSLA--RQVQSKLP--TLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           ++  +  + G++G  K +  TH+        S            +    VYL+ LP+AH 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-------WLDHSTVYLAALPMAHN 235

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALR-------------DDLMEL----KPTLLAGVPR 321
                   +     S     G L  L              DD   L    K T+ A VP 
Sbjct: 236 --------Y---PLSSP---GVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPP 281

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
           +                              + WM+          L+ L        ++
Sbjct: 282 LA-----------------------------MVWMD--AASSRRDDLSSL--------QV 302

Query: 382 GGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG 439
                    GGA  S E       V  C  L Q +G+ E          D    +V T G
Sbjct: 303 L------QVGGAKFSAEAARRVKAVFGCT-LQQVFGMAEGL-VNYTRLDDPEEIIVNTQG 354

Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHT 497
            P+S Y E R+    +     +     G +  RG     GYYK  +    S   DG++ T
Sbjct: 355 KPMSPYDESRV--WDDHD-RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411

Query: 498 G 498
           G
Sbjct: 412 G 412

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  136 bits (346), Expect = 4e-35
 Identities = 107/462 (23%), Positives = 155/462 (33%), Gaps = 122/462 (26%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY EVY+   +++  LRA G   G RV   G N  + +EA  A   +  +    
Sbjct: 43  GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK---E 188
              L P  + +IL+HAE   +   D  +  L+       + ++  V       E     E
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 161

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI--- 245
            A+     P    E                    C + YT+GT+G PKGVV +H  +   
Sbjct: 162 EALGEEADPVRVPE-------RAA----------CGMAYTTGTTGLPKGVVYSHRALVLH 204

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------LDRVIEEYFFRRGASVG 295
           +   S VD         ++  DV L  +P+ H+          L           GA   
Sbjct: 205 SLAASLVDGT------ALSEKDVVLPVVPMFHVNAWCLPYAATL----------VGAKQV 248

Query: 296 YYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351
                L+     L+EL      T  AGVP V                             
Sbjct: 249 LPGPRLDP--ASLVELFDGEGVTFTAGVPTV----------------------------- 277

Query: 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP---LSTEVEEF-LRVTC 407
              W+ +                     RL    RLV+ G A    L    E   + V  
Sbjct: 278 ---WLAL------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVR- 321

Query: 408 CAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTAGPVSVYSELRLEEVPEMGY 457
                QGYGLTET       F           +++ +    G       LR+ +  E   
Sbjct: 322 -----QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRP 375

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
            P D    GEV ++G  +  GYY N + TR ++  DG+F TG
Sbjct: 376 VPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 417

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  114 bits (287), Expect = 3e-27
 Identities = 81/439 (18%), Positives = 147/439 (33%), Gaps = 93/439 (21%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            ++E+ E   Q  + L  + G + G RV +     P+W   +  C    LI +P    + 
Sbjct: 75  NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKEL--LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
              + + L  ++   +   D+ ++E+  ++ +C S   LR+ +  +  + +         
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS---LRIKLLVSEKSCD--------- 182

Query: 195 IKPYSWDEFLHL--GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                W  F  L          +         I +TSGTSG PK    ++ ++       
Sbjct: 183 ----GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLA---HILDRVIEEYFFRRGASVGYYHG---DLNALRD 306
             +       +   D+  +        +IL  ++E +    GA    +     D   +  
Sbjct: 239 AGWTG-----LQASDIMWTISDTGWILNILCSLMEPWAL--GACTFVHLLPKFDPLVILK 291

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
            L       + G P V+              R L +     L  YK              
Sbjct: 292 TLSSYPIKSMMGAPIVY--------------RMLLQ---QDLSSYKF------------- 321

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
                             L+  ++ G  L  E  E +   T    + + YG TET G T 
Sbjct: 322 ----------------PHLQNCVTVGESLLPETLENWRAQTGLD-IRESYGQTET-GLTC 363

Query: 426 VCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGY 479
           +         G  G   S Y    ++ + + G + L     G++ +R K      +FSGY
Sbjct: 364 MVSKTMKIKPGYMGTAASCY---DVQIIDDKG-NVLPPGTEGDIGIRVKPIRPIGIFSGY 419

Query: 480 YKNPDLTRESIIDGWFHTG 498
             NPD T  +I   ++  G
Sbjct: 420 VDNPDKTAANIRGDFWLLG 438

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  106 bits (267), Expect = 6e-25
 Identities = 82/504 (16%), Positives = 142/504 (28%), Gaps = 129/504 (25%)

Query: 52  VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111
            +  P +    +  +     G  +  T+ ++Y   L +   L   G+  G RV I     
Sbjct: 34  ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92

Query: 112 PQWVEAMEACNALSLICVPLYDTLGPGAVN---FILDHAEIDFVFVQDKKVKELLSPDCR 168
            ++V A         I VPL    G         +L  +    +      V ++      
Sbjct: 93  LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDV------ 146

Query: 169 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW--DEFLHLGKVNEMEILPPQPFNICTIM 226
                             + +A + G  P S    + L L   N       +  +   + 
Sbjct: 147 -----------------VQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           YTSG++  P GVV++H+ +       +  +    +     +   +S+LP  H        
Sbjct: 190 YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD------- 242

Query: 286 YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345
                   V                  P +L G P V       ++      RP   R  
Sbjct: 243 -----MGLVIGI-------------CAP-ILGGYPAVLTSPVSFLQ------RPA--RWM 275

Query: 346 DALYKYK--LAWM-NMGYKQREASPLADLLAFRKVKARLGG----RLRLVISGGAPLSTE 398
             +       +   N  +         +L A R     + G     +  ++SG   +   
Sbjct: 276 HLMASDFHAFSAAPNFAF---------ELAARRTTDDDMAGRDLGNILTILSGSERVQAA 326

Query: 399 -VEEFLRVTCCAF---------LVQGYGLTETC----------GPTTVCFPDEMCMVGTA 438
            ++ F       F         +   Y L E             P TV F  E    G A
Sbjct: 327 TIKRFAD----RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHA 382

Query: 439 GPVSVYSELRLEEV------------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
            P +      L                +       D   GE+ V G  + +GY++ PD +
Sbjct: 383 KPCAGGGATSLISYMLPRSPIVRIVDSDTC-IECPDGTVGEIWVHGDNVANGYWQKPDES 441

Query: 487 RESII------------DGWFHTG 498
             +                W  TG
Sbjct: 442 ERTFGGKIVTPSPGTPEGPWLRTG 465

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  103 bits (258), Expect = 1e-23
 Identities = 82/473 (17%), Positives = 149/473 (31%), Gaps = 125/473 (26%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y     
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQE 101

Query: 138 GA---VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
                   I+ +++   V +    +K+  + +  +  +   +     +  E  E+   + 
Sbjct: 102 KLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA---IALESIELNRSSS 158

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            +P                    +  +I  + YTSG++  PKGV+++H  +   ++ +  
Sbjct: 159 WQPT-----------------SIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
                   M  + +  S+LP  H +           G            ++  +M     
Sbjct: 202 SFH-----MNDETIIFSWLPPHHDM-----------GLIGCILTPIYGGIQAIMMS---- 241

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK--LAWM-NMGYKQREASPLADL 371
                P  F +             PL       + KYK  ++   N  Y         D 
Sbjct: 242 -----PFSFLQ------------NPL--SWLKHITKYKATISGSPNFAY---------DY 273

Query: 372 LAFRKVKARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGL 417
              R  + +  G          +G  P+  E +E F +    AF   G         YGL
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQ----AFKEFGFRKEAFYPCYGL 329

Query: 418 TETC----------GPTTVCFPDEMCMVGTAGPVSVYSELRLEEV-------------PE 454
            E               T+    E             S    + V             P+
Sbjct: 330 AEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPD 389

Query: 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---------IDGWFHTG 498
               P D    GE+ V+  ++  GY+  P+ TR +             +  TG
Sbjct: 390 TL-IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTG 441

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 75.7 bits (187), Expect = 1e-14
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 33/218 (15%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           V  + N A+D+  +  +  P    + W    D      ++ T+K++     +  +     
Sbjct: 51  VPENFNFAYDVVDVYARDSPEKLAMIW---CDDYGNEKIF-TFKDLKYYSDKAANFFVKH 106

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G   G  V +   +   +   M   + L  I VP    L    + + ++ A +  +    
Sbjct: 107 GIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166

Query: 157 -----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
                ++V E    +C      +  V                G     W +F    +   
Sbjct: 167 EDDVPEQVDEAH-AECGDIPLKKAKV---------------GGDVLEGWIDFRKELE-ES 209

Query: 212 MEILPPQPFNICT-------IMYTSGTSGDPKGVVLTH 242
             I       + T       + ++SGT+G PK V   +
Sbjct: 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 19/125 (15%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET---CGPTTVCFPDEMCMVGTAG 439
            L+  +  G PL+ EV   FL  T    L++G+G TET          FP      G+ G
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETVVTIAT----FPWMEPKPGSIG 396

Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGYYKNPDLTRESIIDG 493
            P   Y   ++E +   G    +    GE+ +         LF  Y K+P+ T E+  DG
Sbjct: 397 KPTPGY---KIELMDRDG-RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG 452

Query: 494 WFHTG 498
           ++HTG
Sbjct: 453 YYHTG 457

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 72.1 bits (176), Expect = 7e-14
 Identities = 54/373 (14%), Positives = 102/373 (27%), Gaps = 53/373 (14%)

Query: 150 DFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KEMAVQTGIKPY----SWDEF 203
           D+    D  +K     D  +  +  +   F+  T       M  Q    P     + ++ 
Sbjct: 6   DYSLEIDAVMKAAQINDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDL 65

Query: 204 LHLG-KVNEMEILPPQPF--------NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                  + +   P            +   +  + GT+G PK VV     I   +S    
Sbjct: 66  RQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMS 125

Query: 255 FLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
                          L+ +P   HI+  + +E   R G        D    R     L  
Sbjct: 126 GYQHRP--GRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDID---PRWVKRSLSE 180

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP--LADL 371
              A V +    + + ++  L       R +                     +P  L +L
Sbjct: 181 GDTATVRKYTHHLVDQVQNTLMNQDI--RFLV-------------------TTPPVLREL 219

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQGYGLTETCGPTTVCFP 429
           L   +V  ++   L  +  GG  L+ +  +F+   +         YG T   G +     
Sbjct: 220 LKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279

Query: 430 DEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKT---LFSGYYKNPDL 485
                       S +    +  V        ++    G V V   +    +    +    
Sbjct: 280 TSESQQVIYDSFSPFITYDV--VDSITA-QTVEYGERGNVIVTHLSPWAFYPRVAERDTA 336

Query: 486 TRESIIDGWFHTG 498
            R   + G+    
Sbjct: 337 IRLPGVSGFAGDR 349

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 9e-11
 Identities = 60/387 (15%), Positives = 117/387 (30%), Gaps = 107/387 (27%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGK---------FGPY-VWKTYKEVYEEV 86
           V+  L   +      ++       +  R +++ +         F  Y V +      +  
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-----QPY 137

Query: 87  LQIVSALRASGAEPGCRVGIYG-ANCPQWVEAMEACNALSLICVP----LYDTLG----P 137
           L++  AL      P   V I G     +   A++ C +  + C       +  L     P
Sbjct: 138 LKLRQALL--ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                +L+  +   ++  D               R+       S+ AE + +      KP
Sbjct: 196 ET---VLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIH------SIQAELRRLLKS---KP 242

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI-CTIMYTSGTSGDPKGVVLTHETIATFVSG---VD 253
           Y  +  L L  V   +      FN+ C I+ T+               +  F+S      
Sbjct: 243 YE-NCLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQ-----------VTDFLSAATTTH 288

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
           + LD     +T D+V  S L     LD   ++                  L  +++   P
Sbjct: 289 ISLDHHSMTLTPDEV-KSLL--LKYLDCRPQD------------------LPREVLTTNP 327

Query: 314 TLLAGVPRVF---------------EKIHEGIKKALEELRP--LRRR-----IF--DALY 349
             L+ +                   +K+   I+ +L  L P   R+      +F   A  
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 350 KYK---LAWMNMGYKQREASPLADLLA 373
                 L W ++   + +   + + L 
Sbjct: 388 PTILLSLIWFDV--IKSDVMVVVNKLH 412

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 57/354 (16%), Positives = 98/354 (27%), Gaps = 93/354 (26%)

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD-PKGVVLTHE---- 243
           M  +TG   Y + + L    V E   +    F+   +        D PK ++   E    
Sbjct: 7   MDFETGEHQYQYKDILS---VFEDAFV--DNFDCKDVQ-------DMPKSILSKEEIDHI 54

Query: 244 -TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------ILDRVIEEYFFRRGASVGY 296
                 VSG          K    ++   F+          ++  +  E    R  S+  
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMT 109

Query: 297 --YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP--------------- 339
             Y    + L +D           V R+ +   + +++AL ELRP               
Sbjct: 110 RMYIEQRDRLYNDNQVFAKY---NVSRL-QPYLK-LRQALLELRPAKNVLIDGVLGSGKT 164

Query: 340 ------LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
                            +K+ W+N+       + L  L      +       R   S   
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNI 223

Query: 394 PLSTE-VEEFLRVTCC------AFLVQGYGLTETCGPTTV-CFPDEMC--MVGT------ 437
            L    ++  LR            LV    L           F +  C  ++ T      
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWNAF-NLSCKILLTTRFKQVT 278

Query: 438 -AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY--YKNPDLTRE 488
                +  + + L+       +P       E     K+L   Y   +  DL RE
Sbjct: 279 DFLSAATTTHISLDHHSM-TLTP------DE----VKSLLLKYLDCRPQDLPRE 321

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 56.8 bits (138), Expect = 8e-09
 Identities = 52/289 (17%), Positives = 87/289 (30%), Gaps = 92/289 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSGT+G PKGV ++H+ + +F +     ++     +      L+  P +   D    
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNW---MIEDAAFDVPKQPQMLAQPPYS--FD---- 200

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
                   SV              M   PTL  G     +P+             E +  
Sbjct: 201 -------LSV--------------MYWAPTLALGGTLFALPK-------------ELVAD 226

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE- 398
            ++ +F  + +  +            S     +            L      G  L+   
Sbjct: 227 FKQ-LFTTIAQLPVGIWTS-----TPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVST 280

Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             +       A ++  YG TE     TV              +S   E+  E V      
Sbjct: 281 ARKLFERFPSAKIINAYGPTEA----TVA-------------LSAI-EITREMVDNYTRL 322

Query: 459 P------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
           P            +D+          GE+ V G  +  GY  NP+ T E
Sbjct: 323 PIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAE 371

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 54.9 bits (133), Expect = 4e-08
 Identities = 76/445 (17%), Positives = 139/445 (31%), Gaps = 143/445 (32%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI------CVPL 131
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +        +       +P+
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG------VLKAGAAYLPV 544

Query: 132 YDTLGPGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
            D   P   ++++L  +    +    +++KE  +    +   L +               
Sbjct: 545 -DPKLPEDRISYMLADSAAACLLTH-QEMKEQAAELPYTGTTLFI--------------- 587

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
                              +    + P   +   IMYTSGT+G PKG + TH  I   V 
Sbjct: 588 --------DDQTRFEEQASDPATAIDPN--DPAYIMYTSGTTGKPKGNITTHANIQGLVK 637

Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV----GYYHGDLNAL 304
            VD          +  D +LS    A   D    +++      A +     +   D   L
Sbjct: 638 HVDYM------AFSDQDTFLSVSNYA--FDAFTFDFYASMLNAARLIIADEHTLLDTERL 689

Query: 305 RDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
            D +++    ++     +F  + +      + ++ LR                       
Sbjct: 690 TDLILQENVNVMFATTALFNLLTD---AGEDWMKGLRC---------------------- 724

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGP 423
                                  ++ GG   S   V + LR+     L+  YG TE    
Sbjct: 725 -----------------------ILFGGERASVPHVRKALRIMGPGKLINCYGPTE---- 757

Query: 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP-------------LDD-----PP- 464
            TV               + +    + ++P+   S              L++     P  
Sbjct: 758 GTVF-------------ATAH---VVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFG 801

Query: 465 -CGEVCVRGKTLFSGYYKNPDLTRE 488
             GE+C+ G  +  GY    DLT+E
Sbjct: 802 AVGELCISGMGVSKGYVNRADLTKE 826

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 54.0 bits (131), Expect = 7e-08
 Identities = 53/284 (18%), Positives = 91/284 (32%), Gaps = 84/284 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV ++   + +F   +      F   ++   ++L+  P +   D    
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFP--VSGGKIFLNQAPFS--FD---- 196

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                   SV              M+L P L +G         + + K         + +
Sbjct: 197 -------LSV--------------MDLYPCLQSGGTLHCVT-KDAVNKP--------KVL 226

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
           F+ L K  L            S +   L        L       +  G  L     +  L
Sbjct: 227 FEELKKSGLNVWTS-----TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALL 281

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
                A +   YG TE     TV              V+   E+  + +      P    
Sbjct: 282 ERFPKAKIFNTYGPTEA----TVA-------------VTSV-EITNDVISRSESLPVGFA 323

Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
                   +D+     P    GE+ + G ++  GY   P+LT +
Sbjct: 324 KPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEK 367

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 50/286 (17%), Positives = 81/286 (28%), Gaps = 92/286 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLSFLPLAHILDR 281
           ++YTSG++G PKGV ++   +++F       +     K   +     +L     A   D 
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA--FDV 237

Query: 282 VIEEYF--FRRGAS--VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
            I E F  +R G     G     L+ L     EL  T    VP + ++         E+ 
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDA 293

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
             L                                               +  GG  ++ 
Sbjct: 294 PHLVY---------------------------------------------LGVGGEKMTP 308

Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
             ++    +    LV  YG TE     T+               S    L   +   +G 
Sbjct: 309 RTQQIWSSSDRVALVNVYGPTE----VTIG-------------CSAGRILPDSDTRCIG- 350

Query: 458 SP--------LDD------PP--CGEVCVRGKTLFSGYYKNPDLTR 487
            P        L             GE+ + G  + +GY   PD   
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKG 396

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 51.7 bits (125), Expect = 3e-07
 Identities = 50/284 (17%), Positives = 95/284 (33%), Gaps = 84/284 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV +T+  + +F        + F   +    V+L+  P +   D    
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFN--LQTGQVFLNQAPFS--FD---- 197

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                   SV              M++ P+L+ G         + I +         + +
Sbjct: 198 -------LSV--------------MDIYPSLVTGGTLWAID-KDMIARP--------KDL 227

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
           F +L +  +            S     L        +   ++  +  G  L  E   + +
Sbjct: 228 FASLEQSDIQVWTS-----TPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLI 282

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
                A ++  YG TE     TV              V+    +  E + +    P    
Sbjct: 283 ERFPKATIMNTYGPTEA----TVA-------------VTGI-HVTEEVLDQYKSLPVGYC 324

Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
                   + +     P    GE+ + G ++  GY  +P+LT +
Sbjct: 325 KSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEK 368

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 47.9 bits (115), Expect = 6e-06
 Identities = 50/281 (17%), Positives = 75/281 (26%), Gaps = 83/281 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I ++SGT+G PK +  TH  I        L L Q          +L   PL+   D    
Sbjct: 169 INFSSGTTGRPKAIACTHAGI------TRLCLGQSFLAFAPQMRFLVNSPLS--FDAATL 220

Query: 285 EYF--FRRGASV---GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           E +     G           D   LR  + E           +F  + +      + L  
Sbjct: 221 EIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVD---LDPDCLGG 277

Query: 340 LRRRIF--DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
           LR+ +   D L                      +   R+   R                 
Sbjct: 278 LRQLLTGGDIL---------------------SVPHVRRALLRHPRLH------------ 304

Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV-------SVY---SEL 447
                        LV GYG TE    T      +  +     P+       +V       
Sbjct: 305 -------------LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHG 351

Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
           +   + E   +       GE+   G  L  GY  +   TR 
Sbjct: 352 QE--IAEPDRA-------GEIVAFGAGLAQGYRNDAARTRA 383

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 53/300 (17%), Positives = 94/300 (31%), Gaps = 107/300 (35%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G+PKG +L H+ I+        F +     +T  D    F  ++   D  + 
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVF---FENSLN--VTEKDRIGQFASIS--FDASVW 239

Query: 285 EYF--FRRGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
           E F     GAS+         D       + + + T++   P     +        E + 
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------ERIL 293

Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
            ++                                              +I+ G+  S  
Sbjct: 294 SIQT---------------------------------------------LITAGSATSPS 308

Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
            V ++         +  YG TE    TT+C              + +      +      
Sbjct: 309 LVNKWKEKVT---YINAYGPTE----TTIC-------------ATTW---VATKETIGHS 345

Query: 458 SP------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
            P            +D+          GE+C+ G+ L  GY+K P+LT +  +D  F  G
Sbjct: 346 VPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           +Y+E++ +V +  + L   G + G  V IY    P+   AM AC
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	498
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.97
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.97
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.97
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.96
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.96
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.88
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	93.7
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.32
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	93.05
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	88.96
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	86.5
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	84.49
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	81.92
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	81.45

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=1.5e-58  Score=479.52  Aligned_cols=387  Identities=24%  Similarity=0.307  Sum_probs=320.6

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...++.++|.++++++|+++|+++.   ++  +..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|
T Consensus        16 ~~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   90 (541)
T 1v25_A           16 EELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF   90 (541)
T ss_dssp             CCCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence            3468999999999999999999864   22  123689999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++|+++.++.+++.+++++++++++|++......+.+... ..+..+.++.+++...          .....
T Consensus        91 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~  159 (541)
T 1v25_A           91 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAP----------EGYLA  159 (541)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCC----------TTCEE
T ss_pred             HHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHh-hCCCccEEEEecCCCC----------ccccc
Confidence            999999999999999999999999999999999999887665543322 2345566666654321          01345


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhh--hhhhccccCCCCCCcEEEEecChHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAH  277 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~pl~h  277 (498)
                      ++++......    .....++++++++|||||||.||+|+++|+++++.....  ...+     ++.++|++++.+|++|
T Consensus       160 ~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h  230 (541)
T 1v25_A          160 YEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFH  230 (541)
T ss_dssp             HHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTS
T ss_pred             HHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchh
Confidence            6665533211    133457899999999999999999999999998776552  2223     6789999999999999


Q ss_pred             HHHHHHHHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010878          278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (498)
Q Consensus       278 ~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (498)
                      .+++..++.+++.|+++++.+.  ++..+++.++++++|+++++|+++..+++.......                    
T Consensus       231 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------  290 (541)
T 1v25_A          231 VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH--------------------  290 (541)
T ss_dssp             HHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC--------------------
T ss_pred             hhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC--------------------
Confidence            9999777889999999999864  999999999999999999999999998764332110                    


Q ss_pred             HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC----
Q 010878          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----  431 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~----  431 (498)
                                               ..++||.+++||+++++++.+++ +.+|+++++.||+||++.+++......    
T Consensus       291 -------------------------~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~  344 (541)
T 1v25_A          291 -------------------------RLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLES  344 (541)
T ss_dssp             -------------------------CCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTT
T ss_pred             -------------------------cchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccc
Confidence                                     11489999999999999999999 567999999999999998777654331    


Q ss_pred             ------ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          432 ------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       432 ------~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                            ....+++|+|+|+++++|+| ++++.++.+.++.|||+|+|++++.|||++|+.|++.| .||||+||
T Consensus       345 ~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TG  417 (541)
T 1v25_A          345 LSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG  417 (541)
T ss_dssp             SCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEE
T ss_pred             cCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcC
Confidence                  12347899999999999999 88877766545789999999999999999999999999 59999998

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=1.3e-58  Score=481.28  Aligned_cols=396  Identities=20%  Similarity=0.239  Sum_probs=330.4

Q ss_pred             CCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCC--CCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 010878           34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (498)
Q Consensus        34 ~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~--~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~  111 (498)
                      +|..+.+..++.++|.++++++||++|+++.   ++  .++.++++||+||.++++++|+.|++.|+++||+|+++++|+
T Consensus        11 ~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~   87 (549)
T 3g7s_A           11 FPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNS   87 (549)
T ss_dssp             CCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS
T ss_pred             CCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence            4555566789999999999999999999986   42  133346899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHh
Q 010878          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (498)
Q Consensus       112 ~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~  191 (498)
                      +++++++|||+++|++++|+++.++.+++.+++++++++++|++......+......  ...+.++..+..         
T Consensus        88 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------  156 (549)
T 3g7s_A           88 IDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE---------  156 (549)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS---------
T ss_pred             HHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC---------
Confidence            999999999999999999999999999999999999999999999877766544332  235556666532         


Q ss_pred             hcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEE
Q 010878          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (498)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (498)
                           ...++++...............++++++|+|||||||.||+|+++|.++++.+......+     ++.++|++++
T Consensus       157 -----~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~  226 (549)
T 3g7s_A          157 -----VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIVG  226 (549)
T ss_dssp             -----SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEEC
T ss_pred             -----CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEEE
Confidence                 235666665432221122222348999999999999999999999999999998887777     8899999999


Q ss_pred             ecChHHHHHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 010878          272 FLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (498)
Q Consensus       272 ~~pl~h~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (498)
                      .+|++|.+++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++.......               
T Consensus       227 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------  291 (549)
T 3g7s_A          227 CMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK---------------  291 (549)
T ss_dssp             CSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC---------------
T ss_pred             eCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc---------------
Confidence            9999999999888888999999999876 999999999999999999999999998764322100               


Q ss_pred             HHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHh----cC---CceEeeeccccCccc
Q 010878          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETCGP  423 (498)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~g---~~l~~~YG~tE~~~~  423 (498)
                                          ..+        .++||.+++||+++++++.+++.+.    ++   +++++.||+||++.+
T Consensus       292 --------------------~~~--------~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~  343 (549)
T 3g7s_A          292 --------------------TYD--------WSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPM  343 (549)
T ss_dssp             --------------------CCC--------CTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSE
T ss_pred             --------------------cCC--------ccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchh
Confidence                                001        1489999999999999999999887    66   899999999999988


Q ss_pred             ccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc---cCC--ccccC
Q 010878          424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFHTG  498 (498)
Q Consensus       424 ~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f---~dG--w~~TG  498 (498)
                      ++..........+++|+|+++++++|+|.+++.  +++.|+.|||+|+|++++.|||++++.+++.|   .+|  ||+||
T Consensus       344 ~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TG  421 (549)
T 3g7s_A          344 VTTNPPLRLDKSTTQGVPMSDIELKVISLEDGR--ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTG  421 (549)
T ss_dssp             EEECCGGGGGGTTSCCEECTTCEEEEECSSSCC--EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEE
T ss_pred             hhcCCccccCcCCCccccCCCCEEEEEeCCCCc--CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccC
Confidence            877665554556899999999999999944554  44456999999999999999999999999998   788  99998

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=7.8e-59  Score=481.42  Aligned_cols=405  Identities=23%  Similarity=0.306  Sum_probs=327.8

Q ss_pred             CcCCceecCcCCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCC
Q 010878           20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE   99 (498)
Q Consensus        20 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~   99 (498)
                      .+..+|++......+|    ...++.++|.++++++|+++|+++.   ++.    +++||+||.++++++|+.|++.|++
T Consensus         4 ~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~   72 (536)
T 3ni2_A            4 QEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQ   72 (536)
T ss_dssp             -CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence            4456777766543333    3478999999999999999999874   322    5899999999999999999999999


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEe
Q 010878          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF  179 (498)
Q Consensus       100 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~  179 (498)
                      +||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+.+.....  .. .++.+
T Consensus        73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~  149 (536)
T 3ni2_A           73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCV  149 (536)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEES
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEe
Confidence            9999999999999999999999999999999999999999999999999999999988776655443221  22 34455


Q ss_pred             cCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccc
Q 010878          180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF  259 (498)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~  259 (498)
                      +....           ....++++...... ..+.....++++++++|||||||.||+|+++|.++++.+....... ..
T Consensus       150 ~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~  216 (536)
T 3ni2_A          150 DSAPD-----------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-NP  216 (536)
T ss_dssp             SCCCT-----------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-SC
T ss_pred             cCCCC-----------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-cc
Confidence            43221           23456666654322 2233445789999999999999999999999999998876643321 00


Q ss_pred             cCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhh
Q 010878          260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (498)
Q Consensus       260 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~  337 (498)
                      ...+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++..       
T Consensus       217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------  289 (536)
T 3ni2_A          217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP-------  289 (536)
T ss_dssp             SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-------
T ss_pred             cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-------
Confidence            125788999999999999999976 7788999999999876 9999999999999999999999999886521       


Q ss_pred             chHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeec
Q 010878          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYG  416 (498)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG  416 (498)
                                                    ..+..++        ++||.+++||+++++++.+++++.| ++++++.||
T Consensus       290 ------------------------------~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG  331 (536)
T 3ni2_A          290 ------------------------------DLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG  331 (536)
T ss_dssp             ------------------------------CGGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred             ------------------------------ccccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence                                          1111112        4899999999999999999999998 899999999


Q ss_pred             cccCcccccccC----CCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-c
Q 010878          417 LTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I  491 (498)
Q Consensus       417 ~tE~~~~~~~~~----~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~  491 (498)
                      +||++.+++.+.    ......++++|+|+++++++|+|.+++.  +++.|+.|||+|+|++++.|||++|+.|.+.| .
T Consensus       332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~--~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~  409 (536)
T 3ni2_A          332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGA--SLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDK  409 (536)
T ss_dssp             CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCC--BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred             ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCc--CCCCCCccEEEEeCcccchhhcCChhHHHhhccC
Confidence            999997765542    1223345899999999999999933344  44556999999999999999999999999999 8


Q ss_pred             CCccccC
Q 010878          492 DGWFHTG  498 (498)
Q Consensus       492 dGw~~TG  498 (498)
                      +|||+||
T Consensus       410 ~g~~~TG  416 (536)
T 3ni2_A          410 EGWLHTG  416 (536)
T ss_dssp             TSCEEEE
T ss_pred             CCceEcc
Confidence            9999998

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.2e-58  Score=481.45  Aligned_cols=400  Identities=24%  Similarity=0.306  Sum_probs=321.6

Q ss_pred             CCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 010878           35 PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (498)
Q Consensus        35 ~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~  114 (498)
                      +..+....|+.++|.++++++|+++|++...  ++..+  +++||+||.++++++|+.|++.|+++||+|+++++|++++
T Consensus        13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~   88 (550)
T 3rix_A           13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF   88 (550)
T ss_dssp             CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred             CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence            4455566899999999999999999986220  22112  5899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcC
Q 010878          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (498)
Q Consensus       115 ~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  194 (498)
                      ++++|||+++|++++|+++.++.+++.++++.++++++|++......+.+... ..+....++.++....         .
T Consensus        89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~  158 (550)
T 3rix_A           89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTD---------Y  158 (550)
T ss_dssp             HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSC---------B
T ss_pred             HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCcc---------c
Confidence            99999999999999999999999999999999999999999987776655433 3355667777665321         1


Q ss_pred             cceeeHHHHHhccccc-----c-ccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcE
Q 010878          195 IKPYSWDEFLHLGKVN-----E-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV  268 (498)
Q Consensus       195 ~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~  268 (498)
                      ....++.++.......     . .+.....++++++|+|||||||.||+|+++|.+++..+......+  ...++.++|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~  236 (550)
T 3rix_A          159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA  236 (550)
T ss_dssp             TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred             cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence            1234566665432111     1 111122457899999999999999999999999998877655431  1126788999


Q ss_pred             EEEecChHHHHHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHH
Q 010878          269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (498)
Q Consensus       269 ~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (498)
                      +++.+|++|.+|+..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++..                 
T Consensus       237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-----------------  299 (550)
T 3rix_A          237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST-----------------  299 (550)
T ss_dssp             EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC-----------------
T ss_pred             EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-----------------
Confidence            9999999999999888889999999999876 9999999999999999999999999986521                 


Q ss_pred             HHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCc-eEeeeccccCcccccc
Q 010878          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTV  426 (498)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~-l~~~YG~tE~~~~~~~  426 (498)
                                          ..+..++        ++||.+++||+++++++.+++.+.++.. +++.||+||+++.++.
T Consensus       300 --------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  351 (550)
T 3rix_A          300 --------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI  351 (550)
T ss_dssp             --------------------GGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred             --------------------cccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence                                1111122        4899999999999999999999999875 9999999999988777


Q ss_pred             cCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       427 ~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      ..... ...+++|+|+|+++++|+|.+++  .+++.|+.|||+|+|++++.|||++++.|++.| .+|||+||
T Consensus       352 ~~~~~-~~~~~vG~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TG  421 (550)
T 3rix_A          352 TPEGD-DKPGAVGKVVPFFEAKVVDLDTG--KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG  421 (550)
T ss_dssp             CCTTC-CCTTEEEEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE
T ss_pred             CCCCC-CCCCCcccccCCcEEEEEeCCCC--cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecC
Confidence            66544 34489999999999999993334  445566999999999999999999999999999 89999998

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=3e-58  Score=477.69  Aligned_cols=384  Identities=14%  Similarity=0.139  Sum_probs=319.5

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..++.++|.++++++||++|+++.    +     +++||+||.++++++|+.|++.|+++||+|+++++|+++++++++|
T Consensus        29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   99 (544)
T 3o83_A           29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA   99 (544)
T ss_dssp             CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence            478999999999999999999874    3     6899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH----HhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (498)
                      |+++|++++|+++.++.+++.+++++++++++|++.....    ...+...........++.++....            
T Consensus       100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  167 (544)
T 3o83_A          100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------  167 (544)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred             HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence            9999999999999999999999999999999999876531    111222223345556666654321            


Q ss_pred             eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010878          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                      ...+.++...............++++++++|||||||.||+|+++|.++.+.+......+     ++.++|++++.+|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  242 (544)
T 3o83_A          168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP  242 (544)
T ss_dssp             SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence            224445544332222222445689999999999999999999999999999999887777     889999999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010878          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (498)
Q Consensus       277 h~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (498)
                      |.+++..  ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.....                    
T Consensus       243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------  302 (544)
T 3o83_A          243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY--------------------  302 (544)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT--------------------
T ss_pred             eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc--------------------
Confidence            9999985  7788999999999876 9999999999999999999999999987643211                    


Q ss_pred             HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcc
Q 010878          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~  433 (498)
                                       ..++        ++||.+++||+++++++.+++.+.+|+++++.||+||++..++........
T Consensus       303 -----------------~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  357 (544)
T 3o83_A          303 -----------------KDQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ  357 (544)
T ss_dssp             -----------------HHHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             -----------------cccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence                             1122        389999999999999999999999999999999999988655444333334


Q ss_pred             ccCccccCc-CCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      ...++|+|+ ++++++|+| +++..++.  |+.|||+|+|++++.|||++|+.+++.| .+|||+||
T Consensus       358 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG  421 (544)
T 3o83_A          358 IFTTQGRPISSDDEIKIVD-EQYREVPE--GEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG  421 (544)
T ss_dssp             HHHCCCEESCTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEE
T ss_pred             ccCCCceecCCCcEEEEEC-CCCCCCCC--CCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcC
Confidence            447899996 899999999 77775554  5999999999999999999999999999 89999998

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1.8e-57  Score=474.42  Aligned_cols=390  Identities=17%  Similarity=0.173  Sum_probs=319.8

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ..++...++|+++++.+||++|+++.   +. ++..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++
T Consensus        53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~  128 (580)
T 3etc_A           53 ENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM  128 (580)
T ss_dssp             SSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred             ccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            45566679999999999999999985   43 334479999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh--HHhhcccccccCCc-cEEEEecCCcHHHHHHHhhcCc
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI  195 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~  195 (498)
                      |||+++|++++|+++.++.+++.+++++++++++|++.+..  ..+.+... ..+.. ..++.++....          .
T Consensus       129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~  197 (580)
T 3etc_A          129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA-ECGDIPLKKAKVGGDVL----------E  197 (580)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHH-HHCSCCCEEEEESSSCC----------T
T ss_pred             HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhh-hCCCcceEEEEeCCccc----------c
Confidence            99999999999999999999999999999999999987654  33333222 22333 45555554321          1


Q ss_pred             ceeeHHHHHhccccccccC---CCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEe
Q 010878          196 KPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (498)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (498)
                      ....+.+............   ....++++++++|||||||.||+|.++|.+++..+......+     ++.+++++++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  272 (580)
T 3etc_A          198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYTV  272 (580)
T ss_dssp             TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEEC
T ss_pred             ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEEe
Confidence            2456666665432211111   245689999999999999999999999999888776654444     78899999999


Q ss_pred             cChHHHHHHHH-HHHHHHcCcEEEEeC---CChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 010878          273 LPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (498)
Q Consensus       273 ~pl~h~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (498)
                      .|+.|..++.. ++.++..|+++++.+   .++..+++.|+++++|+++++|++++.+++..                  
T Consensus       273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------  334 (580)
T 3etc_A          273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------  334 (580)
T ss_dssp             CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------
T ss_pred             CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------
Confidence            99999988876 777899999998874   38999999999999999999999999886410                  


Q ss_pred             HHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccC
Q 010878          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (498)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~  428 (498)
                                          ....++        ++||.+++||+++++++.+++.+.+|+++++.||+||++..++..+
T Consensus       335 --------------------~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~  386 (580)
T 3etc_A          335 --------------------LSHYNF--------STLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP  386 (580)
T ss_dssp             --------------------C---CC--------TTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred             --------------------cccCCC--------ccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence                                111112        4899999999999999999999989999999999999987666554


Q ss_pred             CCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec-----CCCcccccCCchhhhhhccCCccccC
Q 010878          429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       429 ~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g-----~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      .. ...++++|+|+||++++|+| ++++.++.  |+.|||+|+|     ++++.||+++|+.+++.|.||||+||
T Consensus       387 ~~-~~~~~~~G~p~~~~~v~ivd-~~g~~~~~--g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TG  457 (580)
T 3etc_A          387 WM-EPKPGSIGKPTPGYKIELMD-RDGRLCEV--GEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTG  457 (580)
T ss_dssp             TS-CCCTTCCBEECTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEE
T ss_pred             CC-CCCCCccccCCCCCEEEEEC-CCCCCCCC--CCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecC
Confidence            33 34458999999999999999 77765554  5899999997     78999999999999999999999998

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.7e-57  Score=469.19  Aligned_cols=381  Identities=22%  Similarity=0.317  Sum_probs=313.4

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      +...|+.++|.++++++|+++|+++.   +..    .++||+||.++++++|+.|+++|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~   85 (517)
T 3r44_A           13 DKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF   85 (517)
T ss_dssp             GGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence            45689999999999999999999875   321    58999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      |||+++|++++|+++.++.+++.+++++++++++|++......+....... .....++.....               .
T Consensus        86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~  149 (517)
T 3r44_A           86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIGA---------------D  149 (517)
T ss_dssp             HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEEH---------------H
T ss_pred             HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccCc---------------c
Confidence            999999999999999999999999999999999999987766554332211 111111111110               1


Q ss_pred             eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                      .+.+..... ....+.....++++++++|||||||.||+|+++|.++++.+......+     ++..+|++++.+|++|.
T Consensus       150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  223 (517)
T 3r44_A          150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV  223 (517)
T ss_dssp             HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred             cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence            233333222 112233445789999999999999999999999999999998887776     88999999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 010878          279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (498)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (498)
                      +++...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+.+.....                        
T Consensus       224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------  279 (517)
T 3r44_A          224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA------------------------  279 (517)
T ss_dssp             HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH------------------------
T ss_pred             HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc------------------------
Confidence            999886666669999998876 9999999999999999999999999987632211                        


Q ss_pred             cccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC-ccccC
Q 010878          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG  436 (498)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~-~~~~~  436 (498)
                                   ..        ..++||.+++||+++++++.+++.+. ++++++.||+||+++.++...... ....+
T Consensus       280 -------------~~--------~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  337 (517)
T 3r44_A          280 -------------EL--------DAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG  337 (517)
T ss_dssp             -------------HC--------CCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred             -------------cC--------CCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence                         11        12489999999999999999999987 999999999999988777654432 34558


Q ss_pred             ccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       437 s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ++|+|+++++++|+| +++..++.+   .|||+|+|++++.|||++|+.+++.|.+|||+||
T Consensus       338 ~~G~~~~~~~~~i~d-~~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TG  395 (517)
T 3r44_A          338 SAGRATMFTDVAVRG-DDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTG  395 (517)
T ss_dssp             CCBEECTTEEEEEEC-TTSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEE
T ss_pred             CCCcCCCCeEEEEEC-CCCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecc
Confidence            999999999999999 776654443   7999999999999999999999999999999998

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=8.9e-58  Score=473.61  Aligned_cols=380  Identities=18%  Similarity=0.157  Sum_probs=310.1

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..++.++|.++++++|+++|+++.    +     +++||+||.++++++|+.|+++|+++||+|+++++|+++++++++|
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   94 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            468999999999999999999864    3     5899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH----HhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (498)
                      |+++|++++|+++.++.+++.++++.++++++|++.....    ..........+..+.++..++..             
T Consensus        95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  161 (539)
T 1mdb_A           95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE-------------  161 (539)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred             HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence            9999999999999999999999999999999999875321    11111112224445555544321             


Q ss_pred             eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010878          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                        .+.++.... ..+.......++++++++|||||||.||||+++|+++++.+......+     ++.++|++++.+|++
T Consensus       162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  233 (539)
T 1mdb_A          162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA  233 (539)
T ss_dssp             --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred             --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence              011111111 111122345678999999999999999999999999999988877766     789999999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010878          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (498)
Q Consensus       277 h~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (498)
                      |.+++..  ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......                   
T Consensus       234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  294 (539)
T 1mdb_A          234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-------------------  294 (539)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred             ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence            9999974  7888999999999876 99999999999999999999999999876432110                   


Q ss_pred             HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcc
Q 010878          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~  433 (498)
                                        .        ..++||.+++||+++++++.+++++.+|+++++.||+||++..++........
T Consensus       295 ------------------~--------~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  348 (539)
T 1mdb_A          295 ------------------D--------DLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI  348 (539)
T ss_dssp             ------------------C--------CCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             ------------------C--------CccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence                              0        11489999999999999999999998999999999999965433322211123


Q ss_pred             ccCccccCcCC-ceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~~g-~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      ..+++|+|+++ .+++|+| +++..++  .|+.|||+|+|++++.|||++++.|++.| .||||+||
T Consensus       349 ~~~~~G~p~~~~~~~~i~d-~~~~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG  412 (539)
T 1mdb_A          349 IVNTQGKPMSPYDESRVWD-DHDRDVK--PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG  412 (539)
T ss_dssp             HHHCCCEESSTTCEEEEEC-TTSCBCC--TTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEE
T ss_pred             cCCCCCcccCCCceEEEEC-CCCCCCc--CCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecC
Confidence            34789999976 5899999 7776555  45899999999999999999999999999 79999998

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=6.1e-57  Score=468.03  Aligned_cols=404  Identities=23%  Similarity=0.274  Sum_probs=319.7

Q ss_pred             CCceecCcCCCCCCCCCCCcccHHH-HHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCC
Q 010878           22 GPVYRNLLASNGFPSVDSDLNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP  100 (498)
Q Consensus        22 ~~~~r~~~~~~~~~~~~~~~~tl~~-~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~  100 (498)
                      .++|++....-..    +.+.++.+ ++.+.++++ +++|+++.   ++.    +++||+||.++++++|+.|++.|+++
T Consensus         9 ~~~~~~~~~~~~~----p~~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~   76 (548)
T 2d1s_A            9 NIVVGPKPFYPIE----EGSAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVV   76 (548)
T ss_dssp             TSEECCCCSSCCC----SSCHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCT
T ss_pred             ceEecCCCCCCCC----CCcCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCC
Confidence            3566666532221    23468999 899889999 99999863   221    58999999999999999999999999


Q ss_pred             CCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEec
Q 010878          101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT  180 (498)
Q Consensus       101 g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~  180 (498)
                      ||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++......+.+... ..+....++.++
T Consensus        77 gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~  155 (548)
T 2d1s_A           77 DGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQK-TVTTIKTIVILD  155 (548)
T ss_dssp             TCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHH-HSTTCCEEEETT
T ss_pred             CCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhc-CCCCCCEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999987665544322 123244555554


Q ss_pred             CCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCC------CCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhh
Q 010878          181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL  254 (498)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~  254 (498)
                      ....         ......++++.........+....      .++++++++|||||||.||+|+++|+++++.+.....
T Consensus       156 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~  226 (548)
T 2d1s_A          156 SKVD---------YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARD  226 (548)
T ss_dssp             CSSC---------BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTC
T ss_pred             Cccc---------ccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhc
Confidence            3210         001234666654321110111111      2389999999999999999999999999988877655


Q ss_pred             hhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHH
Q 010878          255 FLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK  332 (498)
Q Consensus       255 ~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~  332 (498)
                      .+.  ..++.++|++++.+|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|++++.+++... 
T Consensus       227 ~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-  302 (548)
T 2d1s_A          227 PIY--GNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL-  302 (548)
T ss_dssp             TTT--SCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC-
T ss_pred             hhh--ccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc-
Confidence            410  026788999999999999999987 55567 9999998876 99999999999999999999999998865210 


Q ss_pred             HHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCce
Q 010878          333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFL  411 (498)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l  411 (498)
                                                          .+..++        ++||.+++||+++++++.+++.+.| ++++
T Consensus       303 ------------------------------------~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i  338 (548)
T 2d1s_A          303 ------------------------------------LNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPGV  338 (548)
T ss_dssp             ------------------------------------GGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCC
T ss_pred             ------------------------------------cccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCce
Confidence                                                111112        4899999999999999999999999 6889


Q ss_pred             EeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-
Q 010878          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-  490 (498)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-  490 (498)
                      ++.||+||++.+++..... ....+++|+|+|+++++|+|.+++.  +++.|+.|||+|+|++++.|||++++.|++.| 
T Consensus       339 ~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~  415 (548)
T 2d1s_A          339 RQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTKK--SLGPNRRGEVCVKGPMLMKGYVNNPEATKELID  415 (548)
T ss_dssp             EEEEECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTCC--BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred             eeccccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcCc--cCCCCCCeEEEECCHHHhhhhcCChHHhhhccc
Confidence            9999999998877664433 2345899999999999999943444  44556999999999999999999999999999 


Q ss_pred             cCCccccC
Q 010878          491 IDGWFHTG  498 (498)
Q Consensus       491 ~dGw~~TG  498 (498)
                      .+|||+||
T Consensus       416 ~~g~~~TG  423 (548)
T 2d1s_A          416 EEGWLHTG  423 (548)
T ss_dssp             TTSCEEEE
T ss_pred             CCcEEEcc
Confidence            79999998

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1.4e-56  Score=461.83  Aligned_cols=375  Identities=22%  Similarity=0.297  Sum_probs=310.9

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...|+.++|+++++++||++|+++.    +     +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus         4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l   74 (509)
T 3ivr_A            4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG   74 (509)
T ss_dssp             TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4579999999999999999999874    3     689999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++|+++.++.+++.+++++++++++|++......+..... .......++.+++...              .
T Consensus        75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~  139 (509)
T 3ivr_A           75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP-SLGGVKKAYAIGDGSG--------------P  139 (509)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGG-GCSSCCEEEESSCCCS--------------S
T ss_pred             HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhc-ccCCceEEEEcCCCCc--------------C
Confidence            999999999999999999999999999999999999987766444332 3355666776654211              1


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  279 (498)
                      +.++...............++++++++|||||||.||+|+++|+++++.+......+     ++.++|++++.+|++|.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  214 (509)
T 3ivr_A          140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT  214 (509)
T ss_dssp             CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred             hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence            222222111222333455789999999999999999999999999999998887777     889999999999999999


Q ss_pred             HHHHHHHHHHc-CcEEEEeCCChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 010878          280 DRVIEEYFFRR-GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (498)
Q Consensus       280 g~~~~~~~l~~-G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (498)
                      |+...+.++.. |+++++...++..+++.++++++|+++++|.++..+++...                           
T Consensus       215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---------------------------  267 (509)
T 3ivr_A          215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA---------------------------  267 (509)
T ss_dssp             HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred             HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence            99887665444 55555444599999999999999999999999999876320                           


Q ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCCccccCc
Q 010878          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGT  437 (498)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s  437 (498)
                                  ..++        ++||.++.+|++   ++.+.+.+.+ ++++++.||+||++++++.......  ..+
T Consensus       268 ------------~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~  322 (509)
T 3ivr_A          268 ------------PAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS  322 (509)
T ss_dssp             ------------GGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred             ------------ccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence                        0011        389999999987   8888888888 8999999999999987776544322  256


Q ss_pred             cccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       438 ~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      +|+|+++++++|+| +++..++  .|+.|||+|+|++++.|||++++.+++.|.+|||+||
T Consensus       323 ~G~p~~~~~~~i~d-~~~~~~~--~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TG  380 (509)
T 3ivr_A          323 AGRPLFWRTVAVVD-AEDRPLP--PGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTG  380 (509)
T ss_dssp             CCEECTTCEEEEEC-TTSCBCC--TTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEE
T ss_pred             ccccCCCcEEEEEC-CCCCCCC--CCCceEEEEecCCccccccCCHHHhHHHhhcCCcccc
Confidence            99999999999999 7776554  4599999999999999999999999999999999998

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=1.7e-57  Score=465.79  Aligned_cols=383  Identities=16%  Similarity=0.179  Sum_probs=299.9

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccC---CCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVD---GKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d---~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~  115 (498)
                      ....++.++|.++++++||++|+++.   +   +.++.++++||+||.++++++|+.|++.|+ +||+|+++++|+++++
T Consensus        21 ~~~~tl~~~l~~~a~~~pd~~Al~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~   96 (480)
T 3t5a_A           21 MSVRSLPAALRACARLQPHDPAFTFM---DYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYV   96 (480)
T ss_dssp             ---CCHHHHHHHHHHHSTTSEEEEEE---ETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHH
T ss_pred             CCcccHHHHHHHHHHhCCCCceEEEe---cccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHH
Confidence            45689999999999999999999986   4   234445799999999999999999999996 9999999999999999


Q ss_pred             HHHHHHHHcCCeEeecCC---CCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccC-CccEEEEecCCcHHHHHHHh
Q 010878          116 EAMEACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAV  191 (498)
Q Consensus       116 ~~~lA~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~  191 (498)
                      +++|||+++|++++|+++   .++.+++.+++++++++++|++......+.+....... ....++.++...        
T Consensus        97 ~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  168 (480)
T 3t5a_A           97 VAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD--------  168 (480)
T ss_dssp             HHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC--------
T ss_pred             HHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc--------
Confidence            999999999999999999   78899999999999999999999877766543322110 111233322111        


Q ss_pred             hcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCC------
Q 010878          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------  265 (498)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~------  265 (498)
                                   ... ..........++++++|+|||||||.||||+++|.++++.+......+     .+..      
T Consensus       169 -------------~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~  229 (480)
T 3t5a_A          169 -------------LDA-PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPP  229 (480)
T ss_dssp             -------------TTC-C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCT
T ss_pred             -------------ccc-ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCC
Confidence                         000 111223345678999999999999999999999999999988877766     5555      


Q ss_pred             CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhch
Q 010878          266 DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (498)
Q Consensus       266 ~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~  339 (498)
                      +|++++++|++|.+|+.. ++.+++.|+++++.+.     ++..+++.++++++| +..+|+++..++.....       
T Consensus       230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~-------  301 (480)
T 3t5a_A          230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT-------  301 (480)
T ss_dssp             TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC-------
T ss_pred             CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC-------
Confidence            899999999999999875 7888999999999862     899999999999999 88999998887653210       


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC------CceEe
Q 010878          340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQ  413 (498)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g------~~l~~  413 (498)
                                                .......++        ++||.+++||+++++++.+++.+.++      +.+++
T Consensus       302 --------------------------~~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~  347 (480)
T 3t5a_A          302 --------------------------DDDMAGRDL--------GNILTILSGSERVQAATIKRFADRFARFNLQERVIRP  347 (480)
T ss_dssp             --------------------------TGGGTTCCC--------TTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEE
T ss_pred             --------------------------cccccccch--------hhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccc
Confidence                                      011111112        48999999999999999999999884      37999


Q ss_pred             eeccccCcccccccCCCC------------------------ccccCccccCcCCceEEeeecCC-CCCCCCCCCCCCeE
Q 010878          414 GYGLTETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEV  468 (498)
Q Consensus       414 ~YG~tE~~~~~~~~~~~~------------------------~~~~~s~G~~~~g~~i~ivd~~~-~~~~~~~~~~~Gei  468 (498)
                      .||+||++.+++......                        .....++|+|++ ++++|+| ++ +..  ++.|+.|||
T Consensus       348 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g~~--~~~g~~GEl  423 (480)
T 3t5a_A          348 SYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTCIE--CPDGTVGEI  423 (480)
T ss_dssp             EEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTTEE--CCTTBCEEE
T ss_pred             cccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCCcC--CCCCCEEEE
Confidence            999999998877655432                        123468999999 9999999 55 444  445699999


Q ss_pred             EEecCCCcccccCCchhhhhhc------------cCCccccC
Q 010878          469 CVRGKTLFSGYYKNPDLTRESI------------IDGWFHTG  498 (498)
Q Consensus       469 ~v~g~~v~~gY~~~~~~~~~~f------------~dGw~~TG  498 (498)
                      +|+|++++.|||++|+.|++.|            .+|||+||
T Consensus       424 ~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TG  465 (480)
T 3t5a_A          424 WVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG  465 (480)
T ss_dssp             EEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEE
T ss_pred             EEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeecc
Confidence            9999999999999999999998            46799998

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=2.4e-56  Score=459.46  Aligned_cols=372  Identities=20%  Similarity=0.240  Sum_probs=299.9

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      |+|+.++|.++++++||++|+++.   +..    +++||+||.++++++|+.|+++|+++||+|+++++|+++++++++|
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   73 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            578999999999999999999864   222    6899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEE--cCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      |+++|++++|+++.++.+++.+++++++++++|+  +......+....    ...+ ++.                    
T Consensus        74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~--------------------  128 (504)
T 1t5h_X           74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIF--------------------  128 (504)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEE--------------------
T ss_pred             HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEE--------------------
Confidence            9999999999999999999999999999999999  766544431111    1111 221                    


Q ss_pred             eHHHHHhccc----cccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCC--CCCcEEEEe
Q 010878          199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF  272 (498)
Q Consensus       199 ~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~  272 (498)
                       ++++.....    ..........++++++++|||||||.||+|+++|+++.+.+......+     ++  .++|++++.
T Consensus       129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~  202 (504)
T 1t5h_X          129 -LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL  202 (504)
T ss_dssp             -GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred             -ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence             222221110    111111344678999999999999999999999999999888776655     56  789999999


Q ss_pred             cChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 010878          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (498)
Q Consensus       273 ~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (498)
                      +|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.+++.....                 
T Consensus       203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------  265 (504)
T 1t5h_X          203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA-----------------  265 (504)
T ss_dssp             SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred             cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence            99999999854 7889999999999876 9999999999999999999999999987632100                 


Q ss_pred             HHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCC
Q 010878          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (498)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~  430 (498)
                                        ....+        .++||.+++||+++++++.+++++.+++.+++.||+||++ .+....  
T Consensus       266 ------------------~~~~~--------l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~--  316 (504)
T 1t5h_X          266 ------------------GSSLK--------LDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR--  316 (504)
T ss_dssp             ------------------TCCCC--------CTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--
T ss_pred             ------------------ccccc--------CccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--
Confidence                              00001        1489999999999999999999999999999999999994 333222  


Q ss_pred             CccccCccccCcCCceEEeeecCCC-CCCCCCCCCCCeEEEe-cCCCcccccCCchhhhhhccCCccccC
Q 010878          431 EMCMVGTAGPVSVYSELRLEEVPEM-GYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       431 ~~~~~~s~G~~~~g~~i~ivd~~~~-~~~~~~~~~~Gei~v~-g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                       ....+++|+|.++++++|+| +++ ...+++.|+.|||+|+ |++++.||+++|+.+++.|.||||+||
T Consensus       317 -~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TG  384 (504)
T 1t5h_X          317 -QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTS  384 (504)
T ss_dssp             -SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEE
T ss_pred             -CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccC
Confidence             12348899999999999999 554 2245556699999999 999999999999999999999999998

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=6.6e-56  Score=461.90  Aligned_cols=387  Identities=19%  Similarity=0.224  Sum_probs=317.4

Q ss_pred             CCcccHHHHHHHHHHc-----CCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCch
Q 010878           39 SDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCP  112 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~-----~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~g~~V~i~~~n~~  112 (498)
                      ...+++.++|+++++.     +||++|+++.   ++ ++..+++||+||.++++++|+.|++. |+++||+|+++++|++
T Consensus        35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~  110 (570)
T 3c5e_A           35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP  110 (570)
T ss_dssp             SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred             ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence            3456778999999998     9999999975   42 22347899999999999999999998 9999999999999999


Q ss_pred             hHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhh
Q 010878          113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (498)
Q Consensus       113 ~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  192 (498)
                      ++++++|||+++|++++|+++.++.+++.+++++++++++|++......+.+... ..+.++.++.+++...        
T Consensus       111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------  181 (570)
T 3c5e_A          111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS-ECPSLRIKLLVSEKSC--------  181 (570)
T ss_dssp             HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGG-GCTTCCEEEEESSSCC--------
T ss_pred             HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhh-cCCceeEEEEecccCc--------
Confidence            9999999999999999999999999999999999999999999887666544322 2345556666654211        


Q ss_pred             cCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHH--HhhhhhhhhccccCCCCCCcEEE
Q 010878          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYL  270 (498)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~--~~~~~~~~~~~~~~~~~~~d~~l  270 (498)
                        .....++++...... ........++++++|+|||||||.||+|+++|. ++.  ..... ..+     ++.++|+++
T Consensus       182 --~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~  251 (570)
T 3c5e_A          182 --DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMW  251 (570)
T ss_dssp             --TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEE
T ss_pred             --cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEE
Confidence              013456666644322 122234567899999999999999999999999 554  33333 333     788999999


Q ss_pred             EecChHHHHHHHH-HHHHHHcCcEEEEeC---CChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHH
Q 010878          271 SFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (498)
Q Consensus       271 ~~~pl~h~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (498)
                      +.+|++|.+++.. ++.++..|+++++.+   .++..+++.|+++++|+++++|++++.+++..                
T Consensus       252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------  315 (570)
T 3c5e_A          252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD----------------  315 (570)
T ss_dssp             ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC----------------
T ss_pred             EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc----------------
Confidence            9999999999985 788899999999885   39999999999999999999999999886420                


Q ss_pred             HHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccc
Q 010878          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV  426 (498)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~  426 (498)
                                            ....+        .++||.+++||+++++++.+++.+.+|+++++.||+||++..++.
T Consensus       316 ----------------------~~~~~--------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~  365 (570)
T 3c5e_A          316 ----------------------LSSYK--------FPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMV  365 (570)
T ss_dssp             ----------------------TTTCC--------CTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEEC
T ss_pred             ----------------------ccccc--------cccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceec
Confidence                                  00001        148999999999999999999999889999999999999876655


Q ss_pred             cCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEe-----cCCCcccccCCchhhhhhccCCccccC
Q 010878          427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       427 ~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~-----g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      .... ....+++|+|+++++++|+| +++..++  .|+.|||+|+     |++++.|||++++.|.+.|.+|||+||
T Consensus       366 ~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~~~--~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TG  438 (570)
T 3c5e_A          366 SKTM-KIKPGYMGTAASCYDVQIID-DKGNVLP--PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLG  438 (570)
T ss_dssp             CTTS-CCCTTCCCEECTTCCEEEEC-TTSCBCC--TTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEE
T ss_pred             Cccc-ccCCCcccccCCCceEEEEC-CCCCCCC--CCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccc
Confidence            4332 23458999999999999999 7776554  4589999999     999999999999999999999999998

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=4.9e-56  Score=460.03  Aligned_cols=386  Identities=20%  Similarity=0.233  Sum_probs=306.9

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ..++++.++|+++++ +|+++|+++.    +     .++||+||.++++++|+.|+++|+++||+|+++++|++++++++
T Consensus        21 ~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~   90 (529)
T 2v7b_A           21 ALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF   90 (529)
T ss_dssp             -CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred             cceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence            455679999999999 9999999864    3     48999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCc-cEEEEecCCcHHHHHHHhhcCcce
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGIKP  197 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~~~  197 (498)
                      |||+++|++++|+++.++.+++.+++++++++++|++......+.+.... .... ..++.++.....        ....
T Consensus        91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~  161 (529)
T 2v7b_A           91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALES-AEHDGCQLIVSQPRESE--------PRLA  161 (529)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHC-C---CCEEEEECC--------------CC
T ss_pred             HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhh-ccccCceEEEecccccc--------cccc
Confidence            99999999999999999999999999999999999998776554433221 1222 344444432110        0012


Q ss_pred             eeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhH-HHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010878          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                      ..++++...... ........++++++++|||||||.||+|+++|.++ .+........+     ++.++|++++.+|++
T Consensus       162 ~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~  235 (529)
T 2v7b_A          162 PLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLF  235 (529)
T ss_dssp             CBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTT
T ss_pred             cchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHH
Confidence            246666543211 22223456799999999999999999999999999 56655544444     788999999999999


Q ss_pred             HHHHHHH-HHHHHHcCcEEEEeC-C-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010878          277 HILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (498)
Q Consensus       277 h~~g~~~-~~~~l~~G~~~~~~~-~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (498)
                      |.+++.. ++.++..|+++++.+ . ++..+++.++++++|+++++|+++..+++...                      
T Consensus       236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------  293 (529)
T 2v7b_A          236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN----------------------  293 (529)
T ss_dssp             SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT----------------------
T ss_pred             HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc----------------------
Confidence            9999976 667899999999873 3 99999999999999999999999988764210                      


Q ss_pred             HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcc
Q 010878          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~  433 (498)
                                  .....           ..+||.+++||+++++++.+++++.+|+++++.||+||++++++...... .
T Consensus       294 ------------~~~~~-----------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~  349 (529)
T 2v7b_A          294 ------------LPARA-----------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-V  349 (529)
T ss_dssp             ------------CCCGG-----------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-C
T ss_pred             ------------ccccc-----------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-C
Confidence                        00000           02799999999999999999999999999999999999977666554443 3


Q ss_pred             ccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ..+++|+|++|++++|+| ++++.++  .|+.|||+|+|++++.|||++++.+.+.|.+|||+||
T Consensus       350 ~~~~~G~p~~~~~~~i~d-~~g~~~~--~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TG  411 (529)
T 2v7b_A          350 EYGTTGRPVPGYEIELRD-EAGHAVP--DGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSG  411 (529)
T ss_dssp             CTTSCCEECTTCEEEEEC-TTSCBCC--TTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEE
T ss_pred             ccCCcccCCCCCEEEEEC-CCCCCCC--CCCccEEEEecCCcccccCCChHHHHHhhhcCCcccC
Confidence            448999999999999999 7776555  4599999999999999999999999999999999998

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.9e-56  Score=459.68  Aligned_cols=375  Identities=22%  Similarity=0.312  Sum_probs=304.0

Q ss_pred             HHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcC
Q 010878           46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS  125 (498)
Q Consensus        46 ~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G  125 (498)
                      ++|.+.++++|+++++..... ++     +++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   77 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG   77 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            468899999999999986310 23     589999999999999999999999999999999999999999999999999


Q ss_pred             CeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHh
Q 010878          126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  205 (498)
Q Consensus       126 ~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (498)
                      ++++|+++.++.+++.+++++++++++|++......+....... .  ..++.++....             ..+.+...
T Consensus        78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~  141 (503)
T 4fuq_A           78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA  141 (503)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence            99999999999999999999999999999987655443322211 1  13344433211             11222221


Q ss_pred             ccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHH-H
Q 010878          206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E  284 (498)
Q Consensus       206 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~  284 (498)
                      .. ..........++++++++|||||||.||+|+++|.++.+.+......+     ++.++|++++.+|++|.+|+.. .
T Consensus       142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~  215 (503)
T 4fuq_A          142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS  215 (503)
T ss_dssp             TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred             cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence            11 112223345689999999999999999999999999999998887777     8899999999999999999765 7


Q ss_pred             HHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCC
Q 010878          285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  363 (498)
Q Consensus       285 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (498)
                      +.+++.|+++++.+. ++..+++.++  ++|+++++|+++..+++...                                
T Consensus       216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--------------------------------  261 (503)
T 4fuq_A          216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--------------------------------  261 (503)
T ss_dssp             HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred             HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence            788999999998876 9999999998  89999999999998865210                                


Q ss_pred             CchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcC
Q 010878          364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  443 (498)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~  443 (498)
                           ....+        .++||.+++||+++++++.+.+.+.+|+++++.||+||++..+.... ......+++|+|++
T Consensus       262 -----~~~~~--------~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~  327 (503)
T 4fuq_A          262 -----LTKET--------TGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP  327 (503)
T ss_dssp             -----CSTTT--------TTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred             -----ccccc--------hhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence                 01111        14899999999999999999999999999999999999987655333 33344589999999


Q ss_pred             CceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       444 g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      |++++|+|.+++.  +++.|+.|||+|+|++++.|||++|+.+.+.| .||||+||
T Consensus       328 ~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG  381 (503)
T 4fuq_A          328 GVSARVTDPETGK--ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITG  381 (503)
T ss_dssp             TCEEEEECTTTCC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEE
T ss_pred             CeEEEEEECCCCC--CCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcc
Confidence            9999999944444  44556999999999999999999999999999 69999998

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=2.8e-56  Score=465.44  Aligned_cols=366  Identities=20%  Similarity=0.189  Sum_probs=303.0

Q ss_pred             CCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 010878           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (498)
Q Consensus        37 ~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~  116 (498)
                      ..+...++.++|+++++++||++|+++.    +     +++||+||.++++++|+.|+++|+++||+|+++++|++++++
T Consensus        70 ~~~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~  140 (570)
T 4gr5_A           70 RAPAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVV  140 (570)
T ss_dssp             CCCCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred             cCCccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence            3355689999999999999999999875    3     589999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010878          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (498)
Q Consensus       117 ~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (498)
                      ++|||+++|++++|+++.++.+++.+++++++++++|++......+        .....++..+...             
T Consensus       141 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~-------------  199 (570)
T 4gr5_A          141 ALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEAA-------------  199 (570)
T ss_dssp             HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC----------------
T ss_pred             HHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeecccc-------------
Confidence            9999999999999999999999999999999999999998654332        1112221111100             


Q ss_pred             eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010878          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                              ... ..........++++++|+|||||||.||+|+++|.++.+.+... ..+     ++.++|++++.+|++
T Consensus       200 --------~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~  264 (570)
T 4gr5_A          200 --------SDA-PAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVS  264 (570)
T ss_dssp             -------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTT
T ss_pred             --------ccc-cccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCcc
Confidence                    000 11112234568999999999999999999999999998776552 222     688999999999999


Q ss_pred             HHHHHHHHHHHHHcCcEEEEeCC---ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010878          277 HILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (498)
Q Consensus       277 h~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (498)
                      |..+...++.+++.|+++++.+.   ++..+++.|+++++|+++++|+++..+++....                     
T Consensus       265 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------------  323 (570)
T 4gr5_A          265 WDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---------------------  323 (570)
T ss_dssp             SSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG---------------------
T ss_pred             HHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh---------------------
Confidence            97777778889999999999863   899999999999999999999999998753110                     


Q ss_pred             HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC-
Q 010878          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-  431 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~-  431 (498)
                                         ++        ++||.+++||++++.++.+++.+.+ ++++++.||+||++++++...... 
T Consensus       324 -------------------~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~  376 (570)
T 4gr5_A          324 -------------------AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAG  376 (570)
T ss_dssp             -------------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGG
T ss_pred             -------------------hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccc
Confidence                               01        3899999999999999999998887 789999999999988777554322 


Q ss_pred             --ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cC--------CccccC
Q 010878          432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTG  498 (498)
Q Consensus       432 --~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~d--------Gw~~TG  498 (498)
                        .....++|+|++|++++|+| +++..++.  |+.|||+|+|++++.|||++++.|++.| .+        |||+||
T Consensus       377 ~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~--G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TG  451 (570)
T 4gr5_A          377 DLSGTALPIGVPLAGKRAYVLD-DDLKPAAN--GALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTG  451 (570)
T ss_dssp             GTTSSSCCCBEECTTEEEEEEC-TTSCBCCT--TCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEE
T ss_pred             ccCCCccccceeeCCCEEEEEC-CCCCCCCC--CCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCC
Confidence              22336799999999999999 77765554  5999999999999999999999999998 44        799998

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1.2e-55  Score=466.78  Aligned_cols=399  Identities=16%  Similarity=0.195  Sum_probs=318.1

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      .+++.++|+++++++||++|+++.   +..++..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++||
T Consensus        75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA  151 (652)
T 1pg4_A           75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA  151 (652)
T ss_dssp             ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            467889999999999999999985   33334457999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH---------Hhhccccccc-CCccEEEEecCCcHHHHHHH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSA-QRLRVMVCFTSLTAEQKEMA  190 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~-~~~~~vi~~~~~~~~~~~~~  190 (498)
                      |+++|++++|+++.++.+++.+++++++++++|+++....         .+.+...... ..++.+++++......    
T Consensus       152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----  227 (652)
T 1pg4_A          152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI----  227 (652)
T ss_dssp             HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----
T ss_pred             HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc----
Confidence            9999999999999999999999999999999999876432         1111111110 2355677765321100    


Q ss_pred             hhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhh-hhhhhccccCCCCCCcEE
Q 010878          191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY  269 (498)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~  269 (498)
                      .........|++++..... ........++++++|+|||||||.||||+++|.+++..+.. ....+     ++.++|++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~  301 (652)
T 1pg4_A          228 DWQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIY  301 (652)
T ss_dssp             CCCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEE
T ss_pred             cccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEE
Confidence            0000123467777754321 12233446789999999999999999999999998876643 33344     78899999


Q ss_pred             EEecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHH
Q 010878          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (498)
Q Consensus       270 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (498)
                      ++.+|++|..|+.. ++.+|+.|+++++.+.     ++..+++.|+++++|+++++|++++.+++....           
T Consensus       302 l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----------  370 (652)
T 1pg4_A          302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK-----------  370 (652)
T ss_dssp             EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG-----------
T ss_pred             EEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc-----------
Confidence            99999999999955 7889999999999863     789999999999999999999999988652110           


Q ss_pred             HHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeeccccC
Q 010878          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET  420 (498)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~l~~~YG~tE~  420 (498)
                                              .....+        .++||.+++||+++++++.+++.+.+|   +++++.||+||+
T Consensus       371 ------------------------~~~~~~--------l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~  418 (652)
T 1pg4_A          371 ------------------------AIEGTD--------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET  418 (652)
T ss_dssp             ------------------------GTTTCC--------CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred             ------------------------ccccCC--------cCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccc
Confidence                                    001111        248999999999999999999999888   899999999999


Q ss_pred             cccccccCCC-CccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec--CCCcccccCCchhhhhhc---cCCc
Q 010878          421 CGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGW  494 (498)
Q Consensus       421 ~~~~~~~~~~-~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~f---~dGw  494 (498)
                      ++.++...+. .....+++|+|++|++++|+| +++..++.  |+.|||+|+|  |+++.|||++++.+.+.|   .+||
T Consensus       419 ~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~--g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~  495 (652)
T 1pg4_A          419 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEG--ATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM  495 (652)
T ss_dssp             SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCS--SEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred             ccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCC--CceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCE
Confidence            9877665443 234558999999999999999 77765544  5899999999  799999999999888876   3899


Q ss_pred             cccC
Q 010878          495 FHTG  498 (498)
Q Consensus       495 ~~TG  498 (498)
                      |+||
T Consensus       496 y~TG  499 (652)
T 1pg4_A          496 YFSG  499 (652)
T ss_dssp             EEEE
T ss_pred             EECC
Confidence            9998

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.4e-55  Score=487.57  Aligned_cols=417  Identities=23%  Similarity=0.313  Sum_probs=327.0

Q ss_pred             CCCCCCCcCCceecCcCCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHH
Q 010878           14 GKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL   93 (498)
Q Consensus        14 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L   93 (498)
                      ..++.+....+|++......+    +...++.++|.+.++++||++|+++.   +..    +++||+||.++++++|+.|
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L  105 (979)
T 3tsy_A           37 KQSNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANF  105 (979)
T ss_dssp             --------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHH
T ss_pred             hcccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHH
Confidence            334455667778877654333    34589999999999999999999874   322    5899999999999999999


Q ss_pred             HHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCc
Q 010878           94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL  173 (498)
Q Consensus        94 ~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~  173 (498)
                      +++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+......   ..
T Consensus       106 ~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~  182 (979)
T 3tsy_A          106 HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND---DG  182 (979)
T ss_dssp             HHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT---SC
T ss_pred             HHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc---CC
Confidence            999999999999999999999999999999999999999999999999999999999999998776555433221   12


Q ss_pred             cEEEEecCCcHHHHHHHhhcCcceeeHHHHHhcccc--ccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhh
Q 010878          174 RVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG  251 (498)
Q Consensus       174 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~  251 (498)
                      ..++.+++...      .........++++......  ...+.....++++++|+|||||||.||+|+++|+++++.+..
T Consensus       183 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~  256 (979)
T 3tsy_A          183 VVIVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ  256 (979)
T ss_dssp             CEEEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHH
T ss_pred             ceEEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHH
Confidence            23444443211      0011123455555543221  122233457899999999999999999999999999988766


Q ss_pred             hhhhhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHH
Q 010878          252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEG  329 (498)
Q Consensus       252 ~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~  329 (498)
                      ...... ....+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.
T Consensus       257 ~~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  335 (979)
T 3tsy_A          257 QVDGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS  335 (979)
T ss_dssp             HHCSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC
T ss_pred             HHHhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC
Confidence            543210 1125788999999999999999976 6778999999999876 999999999999999999999999988652


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-C
Q 010878          330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-C  408 (498)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g  408 (498)
                      ..                                     ....++        ++||.+++||+++++++.+++.+.| +
T Consensus       336 ~~-------------------------------------~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~  370 (979)
T 3tsy_A          336 SE-------------------------------------TEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFPN  370 (979)
T ss_dssp             GG-------------------------------------GGTSCC--------TTCCEEEESSCCCCSSHHHHHHHHCTT
T ss_pred             cc-------------------------------------ccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHCCC
Confidence            11                                     111112        4899999999999999999999998 8


Q ss_pred             CceEeeeccccCcccccccC----CCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCch
Q 010878          409 AFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD  484 (498)
Q Consensus       409 ~~l~~~YG~tE~~~~~~~~~----~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~  484 (498)
                      +++++.||+||++.+++...    .......+++|+|+++++++|+|.+++.  +++.|+.|||+|+|++++.|||++|+
T Consensus       371 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~--~~~~g~~GEl~i~g~~v~~GY~~~p~  448 (979)
T 3tsy_A          371 AKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGD--SLSRNQPGEICIRGHQIMKGYLNNPA  448 (979)
T ss_dssp             CEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCC--BCCTTCCEEEEEESTTSCSEETTCHH
T ss_pred             CeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCC--CCCCCCccEEEEECCCccccccCChh
Confidence            99999999999998766542    1123345889999999999999933344  44556999999999999999999999


Q ss_pred             hhhhhc-cCCccccC
Q 010878          485 LTRESI-IDGWFHTG  498 (498)
Q Consensus       485 ~~~~~f-~dGw~~TG  498 (498)
                      .|++.| .+|||+||
T Consensus       449 ~t~~~f~~~g~~~TG  463 (979)
T 3tsy_A          449 ATAETIDKDGWLHTG  463 (979)
T ss_dssp             HHHHHBCTTSCEEEE
T ss_pred             hhhhhccCCCcEEcC
Confidence            999999 89999998

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=3e-55  Score=464.01  Aligned_cols=400  Identities=18%  Similarity=0.199  Sum_probs=317.7

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      .+++.++|+++++++|+++|+++.   +..++..+++||+||.++++++|+.|+ ++|+++||+|+|+++|++++++++|
T Consensus        81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l  157 (663)
T 1ry2_A           81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL  157 (663)
T ss_dssp             ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred             ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            478889999999999999999985   333344579999999999999999999 9999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH---------HhhcccccccCCccEEEEecCCcHHHHHHH
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMA  190 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~  190 (498)
                      ||+++|++++|+++.++.+++.+++++++++++|+++....         .+.+.. ...+.++.+++++......   .
T Consensus       158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~---~  233 (663)
T 1ry2_A          158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDAL-RETPGVRHVLVYRKTNNPS---V  233 (663)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHT-TSCTTCCEEEEECSSCCSS---C
T ss_pred             HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHH-HhCCCCceEEEEecCCCCc---c
Confidence            99999999999999999999999999999999999876432         111111 2224556777765421100   0


Q ss_pred             hhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhh-hhhhhccccCCCCCCcEE
Q 010878          191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY  269 (498)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~  269 (498)
                      .........|+++..... ...+..+..++++++|+|||||||.||||+++|.+++..+.. ....+     ++.++|++
T Consensus       234 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~  307 (663)
T 1ry2_A          234 AFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVF  307 (663)
T ss_dssp             CCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEE
T ss_pred             ccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEE
Confidence            000112346777765432 112233456789999999999999999999999998876643 33344     78899999


Q ss_pred             EEecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHH
Q 010878          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (498)
Q Consensus       270 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (498)
                      ++.+|++|+.|+.. ++.+|+.|+++++.+.     ++..+++.|+++++|+++++|++++.+.+....           
T Consensus       308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-----------  376 (663)
T 1ry2_A          308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS-----------  376 (663)
T ss_dssp             EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT-----------
T ss_pred             EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc-----------
Confidence            99999999999955 7889999999999863     789999999999999999999999987541100           


Q ss_pred             HHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeeccccC
Q 010878          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET  420 (498)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~l~~~YG~tE~  420 (498)
                                              ..+..++        ++||.+++||+++++++.+++.+.+|   +++++.||+||+
T Consensus       377 ------------------------~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~  424 (663)
T 1ry2_A          377 ------------------------YIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES  424 (663)
T ss_dssp             ------------------------SSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTT
T ss_pred             ------------------------ccccCCc--------CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccc
Confidence                                    0011112        48999999999999999999999888   899999999999


Q ss_pred             cccccccCC--CCccccCccccCcCCceEEeeecC-CCCCCCCCCCCCCeEEEec--CCCcccccCCchhhhhhc-c--C
Q 010878          421 CGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI-I--D  492 (498)
Q Consensus       421 ~~~~~~~~~--~~~~~~~s~G~~~~g~~i~ivd~~-~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~f-~--d  492 (498)
                      ++.++....  .....++++|+|++|++++|+| + ++..++. .|+.|||+|+|  |+++.|||++++.+.+.| .  +
T Consensus       425 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~  502 (663)
T 1ry2_A          425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP  502 (663)
T ss_dssp             CSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred             cCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCC
Confidence            977666543  2234558999999999999999 6 6654433 25889999999  589999999999998887 3  8


Q ss_pred             CccccC
Q 010878          493 GWFHTG  498 (498)
Q Consensus       493 Gw~~TG  498 (498)
                      |||+||
T Consensus       503 g~y~TG  508 (663)
T 1ry2_A          503 GYYFTG  508 (663)
T ss_dssp             TSEEEE
T ss_pred             CEEEcC
Confidence            999998

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=8.7e-56  Score=456.35  Aligned_cols=368  Identities=17%  Similarity=0.181  Sum_probs=302.0

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~  121 (498)
                      +|+.++|+++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~   71 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC   71 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            47899999999999999999875   3      58999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHH
Q 010878          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (498)
Q Consensus       122 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  201 (498)
                      +++|++++|+++.++.+++.++++.++++++|++.......        .. ..++..+                  .+.
T Consensus        72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~~------------------~~~  124 (512)
T 3fce_A           72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSED------------------NLK  124 (512)
T ss_dssp             HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEETH------------------HHH
T ss_pred             HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceechh------------------hhh
Confidence            99999999999999999999999999999999985432110        00 1111110                  111


Q ss_pred             HHHh-ccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH
Q 010878          202 EFLH-LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (498)
Q Consensus       202 ~~~~-~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g  280 (498)
                      ++.. .......+.....++++++++|||||||.||+|+++|.++++.+......+     ++.++|++++.+|++|.++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  199 (512)
T 3fce_A          125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS  199 (512)
T ss_dssp             HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred             hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence            1111 111112223345689999999999999999999999999999998887776     8899999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010878          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (498)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (498)
                      +..++.+++.|+++++.+.    ++..+++.++++++|+++++|++++.++....                         
T Consensus       200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  254 (512)
T 3fce_A          200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS-------------------------  254 (512)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred             HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence            9888899999999999874    89999999999999999999999988754210                         


Q ss_pred             hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC----
Q 010878          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  431 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~----  431 (498)
                                  ....+        .++||.+++||+++++++.+++.+.| ++++++.||+||+++.++......    
T Consensus       255 ------------~~~~~--------~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  314 (512)
T 3fce_A          255 ------------FSESM--------LPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD  314 (512)
T ss_dssp             ------------CSTTT--------STTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred             ------------ccchh--------CccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence                        01111        14899999999999999999999998 889999999999998777554332    


Q ss_pred             ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhcc----CCccccC
Q 010878          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTG  498 (498)
Q Consensus       432 ~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~----dGw~~TG  498 (498)
                      .....++|+|+++++++|+| +++..++.  |+.|||+|+|++++.|||++++.+++.|.    +|||+||
T Consensus       315 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG  382 (512)
T 3fce_A          315 QYKSLPVGYCKSDCRLLIMK-EDGTIAPD--GEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTG  382 (512)
T ss_dssp             HCSSCCCEEECTTCEEEEEC-SSSCBCCT--TSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE
T ss_pred             ccCCCccccccCCcEEEEEC-CCCCCCCC--CCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCC
Confidence            12347899999999999999 77765554  58999999999999999999999999982    5699998

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2.2e-55  Score=453.07  Aligned_cols=367  Identities=17%  Similarity=0.207  Sum_probs=307.3

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      +|+.++|+++++++|+++|+++.    +     +++||+||.++++++|+.|++. |.++|++|+++++|++++++++||
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA   71 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG   71 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence            47899999999999999999874    3     6899999999999999999875 889999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++|+++.++.+++.+++++++++++|++.........      .                      ......+
T Consensus        72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------~----------------------~~~~~~~  123 (511)
T 3e7w_A           72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------Q----------------------QIQTVSA  123 (511)
T ss_dssp             HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------C----------------------SSCEEEH
T ss_pred             HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------c----------------------ccceecH
Confidence            99999999999999999999999999999999997643211100      0                      0113445


Q ss_pred             HHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH
Q 010878          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (498)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g  280 (498)
                      +++...............++++++++|||||||.||+|+++|.++.+.+......+     ++..+|++++.+|++|.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  198 (511)
T 3e7w_A          124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS  198 (511)
T ss_dssp             HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred             hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence            55554432222223345678999999999999999999999999999998877766     8899999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010878          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (498)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (498)
                      +..++.++..|+++++.+.    ++..+++.++++++|+++++|++++.+++...                         
T Consensus       199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  253 (511)
T 3e7w_A          199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG-------------------------  253 (511)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred             HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence            8888899999999998864    89999999999999999999999998764210                         


Q ss_pred             hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC----
Q 010878          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  431 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~----  431 (498)
                                  ....        ..+++|.+++||+++++++.+++.+.| ++++++.||+||+++.++......    
T Consensus       254 ------------~~~~--------~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  313 (511)
T 3e7w_A          254 ------------FSQD--------LLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS  313 (511)
T ss_dssp             ------------CSTT--------TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred             ------------cccc--------cCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence                        0001        114899999999999999999999998 899999999999998776543321    


Q ss_pred             ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc--cCC--ccccC
Q 010878          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTG  498 (498)
Q Consensus       432 ~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f--~dG--w~~TG  498 (498)
                      .....++|+|+|+++++|+| +++..++  .|+.|||+|+|++++.|||++|+.+++.|  .+|  ||+||
T Consensus       314 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TG  381 (511)
T 3e7w_A          314 RSESLPVGFAKPDMNIFIMD-EEGQPLP--EGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTG  381 (511)
T ss_dssp             TCSSCCCBEECTTCEEEEEC-TTSCBCC--TTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEE
T ss_pred             cCCcCCCcceeCCCEEEEEC-CCCCCCC--CCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCC
Confidence            12336799999999999999 7776554  55999999999999999999999999998  455  79998

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=7e-55  Score=458.95  Aligned_cols=382  Identities=18%  Similarity=0.173  Sum_probs=314.6

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..++.++|.++++  ||++|+++.    +     +++||+||.++++++|+.|++.|+++||+|+++++|++++++++||
T Consensus        26 ~~~l~~~~~~~a~--pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA   94 (617)
T 3rg2_A           26 DLPLTDILTRHAA--SDSIAVIDG----E-----RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFA   94 (617)
T ss_dssp             CCCTTHHHHTTTT--CCSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             cCCHHHHHHHhhC--CCCeEEecC----C-----ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            4789999999887  999999874    3     5899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH----HhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  196 (498)
                      |+++|++++|+++.++.+++.++++++++++++++.....    .............+.+...++...            
T Consensus        95 ~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  162 (617)
T 3rg2_A           95 LLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE------------  162 (617)
T ss_dssp             HHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST------------
T ss_pred             HHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc------------
Confidence            9999999999999999999999999999999999876531    111111122244555555544321            


Q ss_pred             eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010878          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                       ..+.+..... .......+..++++++++|||||||.||||+++|.++++.+......+     ++.++|++++.+|++
T Consensus       163 -~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~  235 (617)
T 3rg2_A          163 -HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAA  235 (617)
T ss_dssp             -TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred             -cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccch
Confidence             1233333322 112223445678999999999999999999999999999999888777     889999999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010878          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (498)
Q Consensus       277 h~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (498)
                      |.+++..  ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+++.......                  
T Consensus       236 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------  297 (617)
T 3rg2_A          236 HNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES------------------  297 (617)
T ss_dssp             SHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC------------------
T ss_pred             hhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc------------------
Confidence            9999875  7888999999999876 899999999999999999999999998764322100                  


Q ss_pred             HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcc
Q 010878          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (498)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~  433 (498)
                                       ..+        .++||.+++||+++++++.+++.+.+|+++++.||+||++..++........
T Consensus       298 -----------------~~~--------l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~  352 (617)
T 3rg2_A          298 -----------------RAQ--------LASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEK  352 (617)
T ss_dssp             -----------------TTT--------TTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHH
T ss_pred             -----------------ccc--------CCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccc
Confidence                             001        1489999999999999999999999999999999999998655544333333


Q ss_pred             ccCccccCc-CCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      ...++|+|+ ++++++|+| ++++.++.  |+.|||+|+|+++++||+++|+.|++.| .+|||+||
T Consensus       353 ~~~~~G~p~~~~~~~~i~d-~~~~~~p~--G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTG  416 (617)
T 3rg2_A          353 IIHTQGYPMCPDDEVWVAD-AEGNPLPQ--GEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG  416 (617)
T ss_dssp             HHHCCCEESCTTCEEEEEC-TTSCBCCT--TCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEE
T ss_pred             cccCCCccCCCCceEEEEC-CCCCCCCC--CCceEEEecCccccchhcCChhhhhhccCCCCceecC
Confidence            346889997 788999999 77765554  5999999999999999999999999999 89999998

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=8.6e-55  Score=456.70  Aligned_cols=362  Identities=18%  Similarity=0.131  Sum_probs=299.2

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...++.++|.+.++++||++|+++.   +      .++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus        25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l   95 (620)
T 4dg8_A           25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL   95 (620)
T ss_dssp             GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4579999999999999999999875   3      589999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++|++|.++.+++.++++++++++++++.......        .....+ .                     
T Consensus        96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~---------------------  145 (620)
T 4dg8_A           96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-P---------------------  145 (620)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-E---------------------
T ss_pred             HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-e---------------------
Confidence            9999999999999999999999999999999999765432211        011110 0                     


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  279 (498)
                      +....  ............++++++++|||||||.||||+++|+++.+.+.. ...+     .+.++|++++.+|++|..
T Consensus       146 ~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~  217 (620)
T 4dg8_A          146 VRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDA  217 (620)
T ss_dssp             GGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTH
T ss_pred             eccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHH
Confidence            00000  001111222346799999999999999999999999999887765 3333     788999999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEeCC---ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010878          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (498)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (498)
                      ++..++.++..|+++++.+.   ++..+.+.++++++|+++++|++++.+++...                         
T Consensus       218 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------------------------  272 (620)
T 4dg8_A          218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-------------------------  272 (620)
T ss_dssp             HHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------------------------
T ss_pred             HHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------------------------
Confidence            99889999999999998642   89999999999999999999999998865210                         


Q ss_pred             hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC---c
Q 010878          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M  432 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~---~  432 (498)
                                     .++        ++||.+++||+++++++.+++.+.+ ++++++.||+||++.+++......   .
T Consensus       273 ---------------~~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~  329 (620)
T 4dg8_A          273 ---------------DCL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLE  329 (620)
T ss_dssp             ---------------GGG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGG
T ss_pred             ---------------hhC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccC
Confidence                           001        3899999999999999888887766 889999999999998776543322   2


Q ss_pred             cccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cC-------CccccC
Q 010878          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID-------GWFHTG  498 (498)
Q Consensus       433 ~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~d-------Gw~~TG  498 (498)
                      ....++|+|++|++++|+| +++.. .++.|+.|||+|+|+++++||+++|+.|++.| .+       +||+||
T Consensus       330 ~~~~~iG~p~~~~~~~i~d-~~~~~-~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTG  401 (620)
T 4dg8_A          330 EDDIPIGKAIAGTAVLLLD-EHGQE-IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTG  401 (620)
T ss_dssp             SSSCCCBEECTTEEEEEEC-TTSCB-CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEE
T ss_pred             CCCCCceecccCcEEEEEC-ccCCC-CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCC
Confidence            3347899999999999999 76664 23456899999999999999999999999999 43       799998

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=2.8e-54  Score=449.01  Aligned_cols=363  Identities=19%  Similarity=0.233  Sum_probs=297.8

Q ss_pred             CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010878           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (498)
Q Consensus        40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l  119 (498)
                      ...++.++|.+.++++||++|+++.    +     +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus        37 ~~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l  107 (563)
T 1amu_A           37 RDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL  107 (563)
T ss_dssp             TTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3578999999999999999999864    3     589999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010878          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (498)
Q Consensus       120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  199 (498)
                      ||+++|++++|+++.++.+++.+++++++++++|++......+....     ....+..++....               
T Consensus       108 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~~---------------  167 (563)
T 1amu_A          108 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDTI---------------  167 (563)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCSTT---------------
T ss_pred             HHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchhh---------------
Confidence            99999999999999999999999999999999999987655443211     1112333322100               


Q ss_pred             HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHH
Q 010878          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (498)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~  279 (498)
                          ...  .......+..++++++++|||||||.||||+++|+++.+.+......+     ++.++|++++.+|++|..
T Consensus       168 ----~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  236 (563)
T 1amu_A          168 ----KIR--EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA  236 (563)
T ss_dssp             ----TTS--CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred             ----ccc--cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHH
Confidence                000  111112334678999999999999999999999999998888776665     788999999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010878          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (498)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (498)
                      ++..++.+++.|+++++.+.    ++..+++.++++++|+++++|+++..+...                          
T Consensus       237 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------------  290 (563)
T 1amu_A          237 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------------------------  290 (563)
T ss_dssp             HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------------------------
T ss_pred             HHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------------------------
Confidence            98888889999999998764    889999999999999999999998765320                          


Q ss_pred             HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC--cc
Q 010878          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MC  433 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~--~~  433 (498)
                                               ..++||.+++||+++++++.+++.+.  +++++.||+||++.+++......  ..
T Consensus       291 -------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~  343 (563)
T 1amu_A          291 -------------------------RILSIQTLITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATKETIG  343 (563)
T ss_dssp             -------------------------TCCSCSEEEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCC
T ss_pred             -------------------------ccccccEEEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCC
Confidence                                     01389999999999999999998774  78999999999988766544322  22


Q ss_pred             ccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhcc-------CCccccC
Q 010878          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTG  498 (498)
Q Consensus       434 ~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~-------dGw~~TG  498 (498)
                      ...++|+|+++++++|+| +++..++  .|+.|||+|+|++++.|||++|+.|++.|.       +|||+||
T Consensus       344 ~~~~vG~p~~~~~v~i~d-~~~~~~~--~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TG  412 (563)
T 1amu_A          344 HSVPIGAPIQNTQIYIVD-ENLQLKS--VGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTG  412 (563)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSCBCC--TTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEE
T ss_pred             CCCcccceeCCCEEEEEC-CCcCCCC--CCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecC
Confidence            447899999999999999 7776555  458999999999999999999999999983       3599998

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=9.2e-55  Score=449.82  Aligned_cols=368  Identities=17%  Similarity=0.135  Sum_probs=300.9

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      +.++.++|+++++++|+++|+.+.    +     +++||+||.++++++|+.|++.|+++||+|+++++|+++++++++|
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA   73 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA   73 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            578999999999999999999874    3     5899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++|+++.++.+++.++++.++++++|++.+....+.        .. .                     ...+
T Consensus        74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~  123 (521)
T 3l8c_A           74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL  123 (521)
T ss_dssp             HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred             HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence            9999999999999999999999999999999999876432211        11 1                     1122


Q ss_pred             HHHHhcc--ccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       201 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                      .++....  ...........++++++++|||||||.||+|+++|.++++.+.......   ......++++++..|++|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~  200 (521)
T 3l8c_A          124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD  200 (521)
T ss_dssp             HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred             hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence            2222111  0111223345689999999999999999999999999998877655431   1267889999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      .++..++.++..|+++++.+.    ++..+++.++++++|++.++|+++..++....                       
T Consensus       201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------  257 (521)
T 3l8c_A          201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD-----------------------  257 (521)
T ss_dssp             GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred             HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence            998888889999999998764    88999999999999999999999988754110                       


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC--
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--  431 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~--  431 (498)
                                    ....+        .++||.+++||+++++++.+++.+.+ ++++++.||+||+++.++......  
T Consensus       258 --------------~~~~~--------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~  315 (521)
T 3l8c_A          258 --------------FCQAK--------MPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM  315 (521)
T ss_dssp             --------------CSTTT--------CTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred             --------------ccccc--------CccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence                          00011        14899999999999999999999988 899999999999988776543321  


Q ss_pred             --ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc----cCCccccC
Q 010878          432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTG  498 (498)
Q Consensus       432 --~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f----~dGw~~TG  498 (498)
                        .....++|+|+|+++++|+| +++..++.  |+.|||+|+|++++.|||++++.+++.|    .+|||+||
T Consensus       316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG  385 (521)
T 3l8c_A          316 VDNYTRLPIGYPKPDSPTYIID-EDGKELSS--GEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTG  385 (521)
T ss_dssp             HHHCSSCEEEEECTTSCEEEEC-TTSCBCCT--TCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE
T ss_pred             ccCCCccccccccCCCEEEEEC-CCcCCCCC--CCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCC
Confidence              12336899999999999999 77765554  5899999999999999999999999988    35799998

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.3e-54  Score=453.90  Aligned_cols=384  Identities=17%  Similarity=0.247  Sum_probs=307.0

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      ....++.++|+++++.+||++|+++.   ++  +..+++||+||.++++++|+.|++.|+++||+|+++++|++++++++
T Consensus         8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~   82 (590)
T 3kxw_A            8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF   82 (590)
T ss_dssp             HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence            45689999999999999999999886   42  22369999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCC---ChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCc
Q 010878          119 EACNALSLICVPLYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  195 (498)
                      |||+++|++++|+++.+   +.+++.++++.+++++++++......+........+....+..+                
T Consensus        83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  146 (590)
T 3kxw_A           83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI----------------  146 (590)
T ss_dssp             HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE----------------
T ss_pred             HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee----------------
Confidence            99999999999999988   45789999999999999999887766543321111111111111                


Q ss_pred             ceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecCh
Q 010878          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (498)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  275 (498)
                         ..+++.... ..........++++++|+|||||||.||+|+++|.++++.+......+     ++.++|++++++|+
T Consensus       147 ---~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~  217 (590)
T 3kxw_A          147 ---ALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP  217 (590)
T ss_dssp             ---EGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred             ---echhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence               111111111 111223345789999999999999999999999999999999887777     88999999999999


Q ss_pred             HHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 010878          276 AHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  349 (498)
Q Consensus       276 ~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (498)
                      +|.+|+.. ++.+++.|+++++.+.     ++..+++.|+++++|++.++|.++..+++.+...                
T Consensus       218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------  281 (590)
T 3kxw_A          218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE----------------  281 (590)
T ss_dssp             TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG----------------
T ss_pred             CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh----------------
Confidence            99999987 7888999999999864     7899999999999999999999999887632111                


Q ss_pred             HHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC------CceEeeeccccCccc
Q 010878          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGP  423 (498)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g------~~l~~~YG~tE~~~~  423 (498)
                                        .....++        ++||.+++||+++++++.+++.+.|+      .++++.||+||++++
T Consensus       282 ------------------~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~  335 (590)
T 3kxw_A          282 ------------------KKEGLDL--------SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL  335 (590)
T ss_dssp             ------------------GGTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred             ------------------hccCCCc--------hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence                              0111112        48999999999999999999998873      379999999999987


Q ss_pred             ccccCCC--------------------------CccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcc
Q 010878          424 TTVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (498)
Q Consensus       424 ~~~~~~~--------------------------~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~  477 (498)
                      ++.....                          ......++|+|+++  ++|+| +++ ..+++.|+.|||+|+|++++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~  411 (590)
T 3kxw_A          336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAK  411 (590)
T ss_dssp             EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCC
T ss_pred             eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCcccc
Confidence            7754321                          11234689999998  88888 553 245556699999999999999


Q ss_pred             cccCCchhhhhhccC-------C--ccccC
Q 010878          478 GYYKNPDLTRESIID-------G--WFHTG  498 (498)
Q Consensus       478 gY~~~~~~~~~~f~d-------G--w~~TG  498 (498)
                      |||++|+.|++.|.+       |  ||+||
T Consensus       412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TG  441 (590)
T 3kxw_A          412 GYWNQPEETRHAFAGKIKDDERSAIYLRTG  441 (590)
T ss_dssp             CBTTCHHHHHHHHCBCCTTC---CCBEEEE
T ss_pred             cccCChhHHHHHHhccccCCCCCCcEEecC
Confidence            999999999999943       6  99998

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.8e-54  Score=445.47  Aligned_cols=376  Identities=20%  Similarity=0.223  Sum_probs=294.9

Q ss_pred             cHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 010878           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (498)
Q Consensus        43 tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~  122 (498)
                      |+.++|.++++++||++|+++.   +      +++||+||.++++++|+.|++.   +||+|+++++|+++++++++||+
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~   69 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW   69 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence            5678999999999999999864   3      4899999999999999999986   89999999999999999999999


Q ss_pred             HcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcce-eeHH
Q 010878          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSWD  201 (498)
Q Consensus       123 ~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~  201 (498)
                      ++|++++|+++.++.+++.+++++++++++|++............  ......+..........   ........ ...+
T Consensus        70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  144 (501)
T 3ipl_A           70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSNE  144 (501)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred             HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccchh
Confidence            999999999999999999999999999999999875543322111  01111111100000000   00000000 0011


Q ss_pred             HHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHH
Q 010878          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (498)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~  281 (498)
                      .+...............++++++++|||||||.||+|+++|.++++.+......+     ++.++|++++.+|++|.+|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  219 (501)
T 3ipl_A          145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL  219 (501)
T ss_dssp             -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred             hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence            1111111111122345689999999999999999999999999999998887776     88999999999999999999


Q ss_pred             HHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccc
Q 010878          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (498)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (498)
                      ..++.++..|+++++.+. ++..+++.++++++|+++++|++++.+++....                            
T Consensus       220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------  271 (501)
T 3ipl_A          220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH----------------------------  271 (501)
T ss_dssp             HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred             HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence            988889999999999876 999999999999999999999999998653110                            


Q ss_pred             CCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC-ccccCccc
Q 010878          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG  439 (498)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~-~~~~~s~G  439 (498)
                           .               ..+||.+++||+++++++.+++.+ +++++++.||+||+++.++...... ....+++|
T Consensus       272 -----~---------------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G  330 (501)
T 3ipl_A          272 -----E---------------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG  330 (501)
T ss_dssp             -----S---------------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred             -----C---------------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence                 0               027899999999999999999987 5999999999999987655443322 23458899


Q ss_pred             cCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       440 ~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      +|+++++++|+| ++       .++.|||+|+|++++.||+++++.+.+ |.+|||+||
T Consensus       331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TG  380 (501)
T 3ipl_A          331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTG  380 (501)
T ss_dssp             EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEE
T ss_pred             CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecC
Confidence            999999999999 44       236799999999999999999999987 899999998

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=2e-54  Score=444.64  Aligned_cols=364  Identities=26%  Similarity=0.299  Sum_probs=293.0

Q ss_pred             CCcccHHHHHHHHHHcCCC-CCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd-~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~  117 (498)
                      .++.++.+.|.++++++|+ ++|+++.    +     +++||+||.++++++|..|.     .|++|+++++|+++++++
T Consensus        19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~   84 (505)
T 3nyq_A           19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA   84 (505)
T ss_dssp             -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred             cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence            4578999999999999987 9999874    3     68999999999999998774     488999999999999999


Q ss_pred             HHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcce
Q 010878          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (498)
Q Consensus       118 ~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~  197 (498)
                      ++||+++|++++|+++.++.+++.+++++++++++|++.....      ......... +.++..               
T Consensus        85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~-~~~~~~---------------  142 (505)
T 3nyq_A           85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALER-VDVDVR---------------  142 (505)
T ss_dssp             HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEE-EECCTT---------------
T ss_pred             HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhccccc-cccccc---------------
Confidence            9999999999999999999999999999999999999865210      001111111 111110               


Q ss_pred             eeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHH
Q 010878          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (498)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h  277 (498)
                                .....+.....++++++++|||||||.||+|+++|.++.+.+......+     ++.++|++++.+|++|
T Consensus       143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~  207 (505)
T 3nyq_A          143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFH  207 (505)
T ss_dssp             ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTS
T ss_pred             ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHH
Confidence                      0111122345678999999999999999999999999999999888777     8899999999999999


Q ss_pred             HHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010878          278 ILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (498)
Q Consensus       278 ~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (498)
                      ..|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+++......                     
T Consensus       208 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~---------------------  265 (505)
T 3nyq_A          208 VHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP---------------------  265 (505)
T ss_dssp             HHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH---------------------
T ss_pred             HHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc---------------------
Confidence            999876 7889999999998876 899999999 8899999999999999876432110                     


Q ss_pred             HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcccc
Q 010878          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~  435 (498)
                                   ....+++        ++|.+++||+++++++.+++.+.+|+++++.||+||++..++...... ...
T Consensus       266 -------------~~~~~l~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~  323 (505)
T 3nyq_A          266 -------------ELAKALA--------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PRA  323 (505)
T ss_dssp             -------------HHHHHHH--------HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CCT
T ss_pred             -------------hhhcccc--------cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CCC
Confidence                         0112233        899999999999999999999999999999999999987766554433 344


Q ss_pred             CccccCcCCceEEeeecCCCCCCCC-CCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          436 GTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       436 ~s~G~~~~g~~i~ivd~~~~~~~~~-~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      +++|+|++|++++|+| +++..++. +.|+.|||+|+|++++.|||++|+.|++.| .||||+||
T Consensus       324 ~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TG  387 (505)
T 3nyq_A          324 GTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTG  387 (505)
T ss_dssp             TCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEE
T ss_pred             CCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccC
Confidence            8999999999999999 77776665 346899999999999999999999999999 79999998

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.4e-53  Score=444.81  Aligned_cols=382  Identities=17%  Similarity=0.128  Sum_probs=301.5

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCC----CCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~----~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~  114 (498)
                      ....++.++|+++++++||++|+++.   ++    ..+..+++||+||.++++++|+.|++.|+ +||+|+++++|++++
T Consensus        17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~   92 (562)
T 3ite_A           17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA   92 (562)
T ss_dssp             -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred             cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence            45678999999999999999999875   32    11223689999999999999999999999 799999999999999


Q ss_pred             HHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcC
Q 010878          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (498)
Q Consensus       115 ~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  194 (498)
                      ++++|||+++|++++|+++.++.+++.+++++++++++|+++.....+.      ......++....             
T Consensus        93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~-------------  153 (562)
T 3ite_A           93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN-------------  153 (562)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC-------------
T ss_pred             HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc-------------
Confidence            9999999999999999999999999999999999999999876543221      111222222211             


Q ss_pred             cceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhc---cccCCCCCCcEEEE
Q 010878          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVYLS  271 (498)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~---~~~~~~~~~d~~l~  271 (498)
                         ..+.+..... ..........++++++|+|||||||.||+|+++|.++.+.+..+...+.   .....+...+++++
T Consensus       154 ---~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (562)
T 3ite_A          154 ---QSFIENLSTQ-DTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC  229 (562)
T ss_dssp             ---HHHHHHHHHS-CCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC
T ss_pred             ---hhhhhhcccc-cccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE
Confidence               1122222211 1111223345788999999999999999999999999988776554321   11124778899999


Q ss_pred             ecChHHHHHHHHHHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 010878          272 FLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  349 (498)
Q Consensus       272 ~~pl~h~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (498)
                      ..|+.|..++..++.++..|+++++.+.  .+..+.+.++++++|+++++|++++.+...                    
T Consensus       230 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~--------------------  289 (562)
T 3ite_A          230 LASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV--------------------  289 (562)
T ss_dssp             CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC--------------------
T ss_pred             ecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC--------------------
Confidence            9999999998888889999999988765  467889999999999999999987764210                    


Q ss_pred             HHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCC
Q 010878          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP  429 (498)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~  429 (498)
                                       +    .+        .++||.+++||+++++++.+++++.+++++++.||+||++..++....
T Consensus       290 -----------------~----~~--------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  340 (562)
T 3ite_A          290 -----------------P----ED--------APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRI  340 (562)
T ss_dssp             -----------------G----GG--------STTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEEC
T ss_pred             -----------------c----cc--------cCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeee
Confidence                             0    01        148999999999999999999999889999999999999887776655


Q ss_pred             CCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCC--ccccC
Q 010878          430 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTG  498 (498)
Q Consensus       430 ~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dG--w~~TG  498 (498)
                      ......+++|+|+++++++|+| ++++ .+++.|+.|||+|+|++++.|||++|+.+...+.+|  ||+||
T Consensus       341 ~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TG  409 (562)
T 3ite_A          341 LPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTG  409 (562)
T ss_dssp             CTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEE
T ss_pred             cCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecC
Confidence            4444457899999999999999 4433 445566999999999999999999999988777777  99998

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=6.9e-51  Score=461.07  Aligned_cols=366  Identities=19%  Similarity=0.222  Sum_probs=303.0

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ..++.++|.+.++++||++|+++.   +      .++||+||.++++++|+.|++.|+++|++|+|+++|+++++++++|
T Consensus       463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la  533 (1304)
T 2vsq_A          463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG  533 (1304)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999875   3      4899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++||+|.++.+++.++++++++++++++......+.+     .+.....+.+++...                
T Consensus       534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~----------------  592 (1304)
T 2vsq_A          534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR----------------  592 (1304)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG----------------
T ss_pred             HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc----------------
Confidence            99999999999999999999999999999999999865443211     112223333332110                


Q ss_pred             HHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH
Q 010878          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (498)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g  280 (498)
                        +. .  ....+.....+++++|++|||||||.||||+++|+++.+. ......+     ++.++|+++...|+.|..+
T Consensus       593 --~~-~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~  661 (1304)
T 2vsq_A          593 --FE-E--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAF  661 (1304)
T ss_dssp             --GG-S--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred             --cc-c--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHH
Confidence              00 0  1111223456889999999999999999999999999876 3333333     7889999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010878          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (498)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (498)
                      ...++.++..|+++++.+.    ++..+.+.|+++++|+++++|++++.+.+...                         
T Consensus       662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~-------------------------  716 (1304)
T 2vsq_A          662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE-------------------------  716 (1304)
T ss_dssp             HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS-------------------------
T ss_pred             HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch-------------------------
Confidence            8889999999999999864    89999999999999999999999998864210                         


Q ss_pred             hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC-CceEeeeccccCcccccccCCCC---c
Q 010878          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDE---M  432 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~l~~~YG~tE~~~~~~~~~~~~---~  432 (498)
                                     ..+        ++||.+++||+++++++.+++.+.++ .+++|.||+||++.+++......   .
T Consensus       717 ---------------~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~  773 (1304)
T 2vsq_A          717 ---------------DWM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS  773 (1304)
T ss_dssp             ---------------HHH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred             ---------------hcC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence                           011        28999999999999999999988774 68999999999998777654322   2


Q ss_pred             cccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-c------CCccccC
Q 010878          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I------DGWFHTG  498 (498)
Q Consensus       433 ~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~------dGw~~TG  498 (498)
                      ....++|+|++|++++|+| +++..+|.  |+.|||+|+|+++++||+|+|+.|++.| .      ++||+||
T Consensus       774 ~~~~~iG~p~~~~~~~i~d-~~~~~~p~--G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTG  843 (1304)
T 2vsq_A          774 ISSLPIGKPISNASVYILN-EQSQLQPF--GAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTG  843 (1304)
T ss_dssp             CSSCCCBEECTTEEEEEEC-TTSCBCCT--TCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEE
T ss_pred             CCCCCCceeeCCCEEEEEC-CCcCCCCC--CCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecC
Confidence            2336899999999999999 77765554  5899999999999999999999999998 3      3499998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.97  E-value=6.8e-31  Score=257.11  Aligned_cols=191  Identities=18%  Similarity=0.107  Sum_probs=161.2

Q ss_pred             CCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeC
Q 010878          219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH  298 (498)
Q Consensus       219 ~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~  298 (498)
                      .++++||+|||||||.||+|+++|+++++.+......+     +++++|++++.+|++|.+|+..++.++..|+++++.+
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~  110 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE  110 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence            36789999999999999999999999999999888777     8999999999999999999998889999999998876


Q ss_pred             CChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHH
Q 010878          299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK  378 (498)
Q Consensus       299 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (498)
                      .. ...++.++++++|+++++|++++.+++....                                      ..++    
T Consensus       111 ~~-~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------------~~~l----  147 (358)
T 4gs5_A          111 PT-ANPLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------------SGQV----  147 (358)
T ss_dssp             CC-SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------------GGGG----
T ss_pred             cc-ccHHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------------cccC----
Confidence            42 2345678999999999999999998752110                                      0112    


Q ss_pred             HHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCC
Q 010878          379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS  458 (498)
Q Consensus       379 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~  458 (498)
                          ++||.+++||+++++++.+++++ +++++++.||+||+++.++......... +++|.+.||+++++.+       
T Consensus       148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~-------  214 (358)
T 4gs5_A          148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE-------  214 (358)
T ss_dssp             ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred             ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence                38999999999999999999987 5999999999999998887776554433 8899999999988755       


Q ss_pred             CCCCCCCCeEEEecCCCc
Q 010878          459 PLDDPPCGEVCVRGKTLF  476 (498)
Q Consensus       459 ~~~~~~~Gei~v~g~~v~  476 (498)
                            .|||+++|+.+.
T Consensus       215 ------~Gel~~~g~~~~  226 (358)
T 4gs5_A          215 ------RGCLHISGAVTN  226 (358)
T ss_dssp             ------TSEEEEESGGGT
T ss_pred             ------cCceEEeccccc
Confidence                  599999987543

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.97  E-value=4.2e-30  Score=253.36  Aligned_cols=226  Identities=17%  Similarity=0.163  Sum_probs=176.9

Q ss_pred             CCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEEE
Q 010878          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG  295 (498)
Q Consensus       217 ~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~l~~G~~~~  295 (498)
                      ..++++++++|||||||.||+|+++|.++..........+.  ..++.++|++++.+|+ +|..|+...+.++..|+.++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ--HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT--TSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH--hhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence            36788999999999999999999999999988875432221  1267889999999999 99999988787899999443


Q ss_pred             EeCCChH-----------------------hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 010878          296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (498)
Q Consensus       296 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (498)
                      ....++.                       .+++.++++++|+++++|+++..|++...                     
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~---------------------  224 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE---------------------  224 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH---------------------
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh---------------------
Confidence            3333666                       78889999999999999999999876321                     


Q ss_pred             HHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHH-Hhc-CCceEeeeccccCcccccccCCC
Q 010878          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD  430 (498)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~-~~~-g~~l~~~YG~tE~~~~~~~~~~~  430 (498)
                                      ....+++        +||.+++||+++++++.++++ +.| ++++++.||+||+++++..+.. 
T Consensus       225 ----------------~~~~~~~--------~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-  279 (369)
T 3hgu_A          225 ----------------VVLQMKQ--------SLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-  279 (369)
T ss_dssp             ----------------HHHHHHH--------HCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred             ----------------hhccccC--------CeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence                            1112233        899999999999999999999 899 8999999999999876533321 


Q ss_pred             CccccCccccC------cCCceEEeeecC-CCCCCCCCCCCCCeEEEecC---CCcccccCCchhhhhhccCCccccC
Q 010878          431 EMCMVGTAGPV------SVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       431 ~~~~~~s~G~~------~~g~~i~ivd~~-~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                           .++|++      +|+++++|+| + +++  +++.|+.|||+|++.   .++.+|...+..+.....+||+.+|
T Consensus       280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g~--~vp~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~  349 (369)
T 3hgu_A          280 -----TSESQQVIYDSFSPFITYDVVD-SITAQ--TVEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDR  349 (369)
T ss_dssp             -----CTTCSSCEEECCTTTEEEEEEC-TTTCS--BCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCE
T ss_pred             -----ccCCCcccccCCCCCeEEEEEC-CCCCc--CCCCCCceEEEEEEcCcccccccccCCceEEEecCCCCCcCcc
Confidence                 248999      9999999999 5 555  445669999999973   3467898777766666688998775

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.97  E-value=8.3e-30  Score=257.01  Aligned_cols=220  Identities=15%  Similarity=0.125  Sum_probs=171.3

Q ss_pred             CCCC-CCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHH-HHHHHHHcCcE
Q 010878          216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS  293 (498)
Q Consensus       216 ~~~~-~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~  293 (498)
                      ...+ +++++++|||||||.||+|+++|.++.+....+...+..  .++.++|++++.+|+.|..+.. .++.++..|++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            3445 889999999999999999999999998776655332211  2678999999999987655554 47778999999


Q ss_pred             EEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHH
Q 010878          294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL  372 (498)
Q Consensus       294 ~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (498)
                      +++.+. ++..+++.|+++++|+++++|+++..+++.........                                   
T Consensus       159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-----------------------------------  203 (436)
T 3qov_A          159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP-----------------------------------  203 (436)
T ss_dssp             EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence            998765 99999999999999999999999999987543221100                                   


Q ss_pred             HHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCccc-ccccCCCCccccCccccCcCCceEEeee
Q 010878          373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE  451 (498)
Q Consensus       373 ~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~-~~~~~~~~~~~~~s~G~~~~g~~i~ivd  451 (498)
                              ..++||.+++||+++++++.+++++.||+++++.||+||+++. +......   . ...|.+.++++++|+|
T Consensus       204 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~-~g~~~~~~~~~v~i~d  271 (436)
T 3qov_A          204 --------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---Q-NGMHFWEDCYLVEIID  271 (436)
T ss_dssp             --------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---C-SSEEECTTTEEEEEEC
T ss_pred             --------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---C-CeeEEccCceEEEEEE
Confidence                    0148999999999999999999999999999999999999654 3333221   1 3467788899999999


Q ss_pred             cCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       452 ~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ++++.  +++.|+.|||+|+|.            +.+.|.+|||+||
T Consensus       272 ~~~g~--~~~~g~~Gel~v~~~------------~~~~~~~~~y~TG  304 (436)
T 3qov_A          272 PETGE--PVPEGEIGELVLTTL------------DREMMPLIRYRTR  304 (436)
T ss_dssp             TTTCS--BCSTTCCEEEEEEES------------SCCSSCCCSEEEE
T ss_pred             CCCCC--CCCCCCceEEEEecc------------CcCCceEEEEEcC
Confidence            44454  445669999999983            2344567888887

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.96  E-value=3e-29  Score=252.99  Aligned_cols=220  Identities=19%  Similarity=0.150  Sum_probs=171.9

Q ss_pred             CCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEE
Q 010878          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV  294 (498)
Q Consensus       216 ~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~l~~G~~~  294 (498)
                      ...++++++++|||||||.||+|+++|.++......+...+..  .++.++|++++.+|+ +|..++...+.++..|+++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~  163 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV  163 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence            3466889999999999999999999999988776544331111  267899999999998 6888887788889999999


Q ss_pred             EEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHH
Q 010878          295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA  373 (498)
Q Consensus       295 ~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (498)
                      ++.+. ++..+++.|+++++|+++++|+++..+++.........                                   +
T Consensus       164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-----------------------------------~  208 (437)
T 2y27_A          164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP-----------------------------------V  208 (437)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------G
T ss_pred             EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------c
Confidence            87766 99999999999999999999999999876543211000                                   0


Q ss_pred             HHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCccc-ccccCCCCccccCccccCcCCceEEeeec
Q 010878          374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV  452 (498)
Q Consensus       374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~-~~~~~~~~~~~~~s~G~~~~g~~i~ivd~  452 (498)
                              .++||.+++||+++++++.+++++.||+++++.||+||+++. +........   ..++.+.++++++|+| 
T Consensus       209 --------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d-  276 (437)
T 2y27_A          209 --------QSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID-  276 (437)
T ss_dssp             --------GSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC-
T ss_pred             --------cCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc-
Confidence                    138999999999999999999999899999999999998543 333322111   1366778999999999 


Q ss_pred             CC-CCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          453 PE-MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       453 ~~-~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                      ++ +.  +++.|+.|||+|+|.            +.+.|.+|||+||
T Consensus       277 ~~~g~--~~~~g~~Gel~v~~~------------t~~~~~~~~y~TG  309 (437)
T 2y27_A          277 PETGE--VLPDGELGELVFTSL------------TKEALPIIRYRTR  309 (437)
T ss_dssp             TTTCC--BCCTTCCEEEEEEES------------SCSSSCCCSEEEE
T ss_pred             CCCCC--CCCCCCccEEEEecC------------CcCCchhheeecC
Confidence            54 44  455669999999983            3344667899987

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.96  E-value=6.3e-29  Score=251.09  Aligned_cols=236  Identities=15%  Similarity=0.104  Sum_probs=176.7

Q ss_pred             eeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecCh-H
Q 010878          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-A  276 (498)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~  276 (498)
                      .+.+++....   +.......++++++++|||||||.||+|+++|.++......+...+..  .++.++|++++.+|+ .
T Consensus        73 ~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~  147 (443)
T 2y4o_A           73 STKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGL  147 (443)
T ss_dssp             BCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSS
T ss_pred             CcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcc
Confidence            3455555432   112233466889999999999999999999999988766554331111  268899999999998 5


Q ss_pred             HHHHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010878          277 HILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (498)
Q Consensus       277 h~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (498)
                      |..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.........                  
T Consensus       148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------  209 (443)
T 2y4o_A          148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------  209 (443)
T ss_dssp             SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------
T ss_pred             cccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------
Confidence            77777778888999999988776 99999999999999999999999999876543211000                  


Q ss_pred             HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCccc-ccccCCCCccc
Q 010878          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCM  434 (498)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~-~~~~~~~~~~~  434 (498)
                                       +        .++||.+++||+++++++.+++++.||+++++.||+||+++. +........  
T Consensus       210 -----------------~--------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~--  262 (443)
T 2y4o_A          210 -----------------A--------ESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK--  262 (443)
T ss_dssp             -----------------G--------GSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC--
T ss_pred             -----------------c--------cCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC--
Confidence                             0        138999999999999999999999899999999999998543 333322111  


Q ss_pred             cCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010878          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       435 ~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                       ...+.+.++++++|+|.+++.  +++.|+.|||+|+|.            +.+.|.+|||+||
T Consensus       263 -~g~~~~~~~~~~~i~d~~~g~--~~~~G~~Gel~v~~~------------t~~~~p~~~y~TG  311 (443)
T 2y4o_A          263 -DGPVIWEDHFYPEIIDPVTGE--VLPDGSQGELVFTSL------------TKEAMPVIRYRTR  311 (443)
T ss_dssp             -CSEEECTTTEEEEEECTTTCC--BCCTTCCEEEEEEES------------SCSSSCCSSEEEE
T ss_pred             -CceEEccCCeEEEEEcCCCCC--CCCCCCceEEEEeCC------------CcccChhheeecC
Confidence             125567789999999932344  444668999999983            3344567899987

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=93.88  E-value=0.86  Score=44.71  Aligned_cols=126  Identities=14%  Similarity=0.056  Sum_probs=91.2

Q ss_pred             CCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHHcCCeEee
Q 010878           55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP  130 (498)
Q Consensus        55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~~~  130 (498)
                      .++.++.+...  .|.+|.+  ..+|...+...+..++..+...|+.++|++....+.+  ...+...++++..|+.+++
T Consensus        88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            34556655442  4556654  4679999988888888878788999999999888853  3445567888999999987


Q ss_pred             cCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccccc-----ccCCccEEEEecCCc
Q 010878          131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSLT  183 (498)
Q Consensus       131 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~vi~~~~~~  183 (498)
                      ++.. ..+.+...+++.++.+++........+.+....     ....++.+++-+..-
T Consensus       166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l  222 (437)
T 2y27_A          166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPW  222 (437)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCC
T ss_pred             CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccC
Confidence            7654 788889999999999999988877666543221     125677777766543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=93.70  E-value=0.84  Score=44.75  Aligned_cols=124  Identities=8%  Similarity=-0.046  Sum_probs=91.2

Q ss_pred             CCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHHcCCeEeecC
Q 010878           57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY  132 (498)
Q Consensus        57 d~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l~  132 (498)
                      +.++++...  .|.+|.+  ..+|...+...+..++..+...|+.++|++....+-+  ...+..+++++..|+.+++.+
T Consensus        86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~  163 (436)
T 3qov_A           86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA  163 (436)
T ss_dssp             HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred             CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence            445554432  4556654  4679999999888888888888999999999988743  344556788899999988776


Q ss_pred             CCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccc-----cCCccEEEEecCCc
Q 010878          133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-----AQRLRVMVCFTSLT  183 (498)
Q Consensus       133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~~~  183 (498)
                      .. .++.+...+++.++.+++........+.+.....     ...++.++.-+..-
T Consensus       164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l  218 (436)
T 3qov_A          164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPH  218 (436)
T ss_dssp             SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCC
T ss_pred             CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcC
Confidence            54 6788889999999999999888777665442211     35677777766553

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=93.32  E-value=0.93  Score=44.52  Aligned_cols=126  Identities=13%  Similarity=0.070  Sum_probs=91.2

Q ss_pred             CCCCCceeeccccCCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHHcCCeEee
Q 010878           55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP  130 (498)
Q Consensus        55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~~~  130 (498)
                      .++.++.+...  .|.+|.++  .+|...+...+..++..+...|+.++|++....+.+  ...+...++++..|+.+++
T Consensus        90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP  167 (443)
T ss_dssp             CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred             ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence            34555544432  56666654  678999988888888878788999999999888853  3445567888899999888


Q ss_pred             cCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccccc-----ccCCccEEEEecCCc
Q 010878          131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSLT  183 (498)
Q Consensus       131 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~vi~~~~~~  183 (498)
                      ++.. ..+.+...+++.++.+++........+.+....     ....++.+++-+..-
T Consensus       168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l  224 (443)
T 2y4o_A          168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPW  224 (443)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCC
T ss_pred             CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcC
Confidence            7664 788888999999999999988877665543221     125677777766553

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=93.05  E-value=1.9  Score=43.64  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=25.8

Q ss_pred             CCCCeEEEEeccCCC-CCCceEEeccHhHHHH
Q 010878          218 QPFNICTIMYTSGTS-GDPKGVVLTHETIATF  248 (498)
Q Consensus       218 ~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~~  248 (498)
                      .++.+.+..-||||| |.+|.+++|...+-..
T Consensus        91 ~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~  122 (581)
T 4eql_A           91 SARTITGFLLSSGTSGGAQKMMPWNNKYLDNL  122 (581)
T ss_dssp             CSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred             CCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence            456677899999999 7799999999876553

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=88.96  E-value=6.3  Score=39.16  Aligned_cols=122  Identities=8%  Similarity=0.022  Sum_probs=87.2

Q ss_pred             CCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHHHHcCCeEeec
Q 010878           55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL  131 (498)
Q Consensus        55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~~~l  131 (498)
                      .++.+|++...  .|.+|.+  ..+|+..+...+..+..   ..++.++|++...+|-... .+..+++++..|+.++..
T Consensus       161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~  235 (501)
T 3ipl_A          161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV  235 (501)
T ss_dssp             CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred             CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence            46677766652  4555554  46788888877666544   3488999999888876533 234467788899988877


Q ss_pred             CCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCC
Q 010878          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL  182 (498)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~  182 (498)
                      + ...++.+...+++.++.+++........+.+........++.++.-+..
T Consensus       236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~  285 (501)
T 3ipl_A          236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK  285 (501)
T ss_dssp             S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred             C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence            5 4678999999999999999999888877765543333366777666554

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=86.50  E-value=2.9  Score=39.72  Aligned_cols=124  Identities=13%  Similarity=0.016  Sum_probs=81.8

Q ss_pred             CCCCCceeeccccCCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC--chhHHHHHHHHHHcCCeEee
Q 010878           55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN--CPQWVEAMEACNALSLICVP  130 (498)
Q Consensus        55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~~~  130 (498)
                      .++.++.+...  .|.+|.++  .+|...+...+..++..+...|+.++|++..+++-  +.......+++...|+.+++
T Consensus        89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~  166 (369)
T 3hgu_A           89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS  166 (369)
T ss_dssp             CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred             CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence            34555655542  46666654  56888888888777777777899999999998886  23334455666889986555


Q ss_pred             cCCCCChh-----------------------HHHHHHhhcCccEEEEcCchhHHhhcccc---cccCCccEEEEecCC
Q 010878          131 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL  182 (498)
Q Consensus       131 l~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~vi~~~~~  182 (498)
                      ..  ..+.                       ++...+++.++.+++........+.+...   .....++.++.-+..
T Consensus       167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~  242 (369)
T 3hgu_A          167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTE  242 (369)
T ss_dssp             CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSC
T ss_pred             cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCcc
Confidence            43  3344                       66668899999999998887776655421   223456667666654

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=84.49  E-value=16  Score=36.59  Aligned_cols=122  Identities=7%  Similarity=-0.075  Sum_probs=85.5

Q ss_pred             CCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHHcCCeEe
Q 010878           55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICV  129 (498)
Q Consensus        55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~~  129 (498)
                      .|+.+|++...  .|.+|.+  ..+|.+.+...+......   .++.++|++...+|-+..+-.   .+++.+..|+.++
T Consensus       180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v  254 (539)
T 1mdb_A          180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV  254 (539)
T ss_dssp             CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred             CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence            45667766652  4555544  478999887776655443   478899998888876544322   4788888999988


Q ss_pred             ecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccc---ccccCCccEEEEecCC
Q 010878          130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL  182 (498)
Q Consensus       130 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~vi~~~~~  182 (498)
                      ..+ ...++.+...+++.++.+++........+.+..   ......++.+++-+..
T Consensus       255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~  309 (539)
T 1mdb_A          255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK  309 (539)
T ss_dssp             ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred             ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence            765 467888999999999999999887776654432   2234567777766654

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=81.92  E-value=11  Score=37.97  Aligned_cols=122  Identities=11%  Similarity=-0.005  Sum_probs=83.3

Q ss_pred             CCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HHHHHHHHHcCCeEeecC
Q 010878           57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVPLY  132 (498)
Q Consensus        57 d~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~~~l~  132 (498)
                      +.+|++...  .|.+|.+  ..+|++.+...+......+...++.++|++...++-+..+  ...+++.+ .|+.++.++
T Consensus       192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~  268 (548)
T 2d1s_A          192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT  268 (548)
T ss_dssp             TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred             CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence            666766552  3555543  4789998887766655443335788999988887765443  23356667 999888775


Q ss_pred             CCCChhHHHHHHhhcCccEEEEcCchhHHhhcccc---cccCCccEEEEecCC
Q 010878          133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL  182 (498)
Q Consensus       133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~vi~~~~~  182 (498)
                       ...++.+...+++.++.+++........+.+...   .....++.++.-+..
T Consensus       269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~  320 (548)
T 2d1s_A          269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAP  320 (548)
T ss_dssp             -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSC
T ss_pred             -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCcc
Confidence             5678899999999999999998887776654321   123566766665544

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=81.45  E-value=17  Score=36.47  Aligned_cols=123  Identities=11%  Similarity=-0.033  Sum_probs=84.6

Q ss_pred             CCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHHcCCeEe
Q 010878           55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICV  129 (498)
Q Consensus        55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~~  129 (498)
                      .++.+|++...  .|.+|.+  ..+|...+...+..++..   .++.++|++...+|.+..+-.   .+++.+..|+.++
T Consensus       189 ~~~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v  263 (544)
T 3o83_A          189 PADEVAFFQLS--GGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV  263 (544)
T ss_dssp             CTTSEEEEEEC--CC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred             CccceEEEEEC--CCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence            35666766552  4555554  478999888777666554   488999999988876544432   3678888999888


Q ss_pred             ecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccc---ccccCCccEEEEecCCc
Q 010878          130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSLT  183 (498)
Q Consensus       130 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~vi~~~~~~  183 (498)
                      ..+. ..+..+...+++.++.++.........+.+..   ......++.+++-+..-
T Consensus       264 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l  319 (544)
T 3o83_A          264 MAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASF  319 (544)
T ss_dssp             ECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCC
T ss_pred             ECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCC
Confidence            7654 57788888999999999999887766654432   22345677777766553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	498
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	8e-53
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	5e-46
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	4e-42
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	9e-34
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-27
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	4e-27
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	2e-22

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  186 bits (474), Expect = 8e-53
 Identities = 76/482 (15%), Positives = 148/482 (30%), Gaps = 73/482 (15%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
            D  LN A +     +Q+      + W      +       +Y+E++ +V +  + L   
Sbjct: 67  EDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHI---SYRELHRDVCRFANTLLDL 123

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G + G  V IY    P+   AM AC  +  +   ++    P AV   +  +    V   D
Sbjct: 124 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD 183

Query: 157 KKVKELLSPDCRSA-----QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
           + V+   S   +       +   V      +  ++    +        W   L      E
Sbjct: 184 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPE 243

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
            +       +   I+YTSG++G PKGV+ T      + +    ++  +       D+Y  
Sbjct: 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY----HPGDIYWC 299

Query: 272 FLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEK 325
              +  +       Y     GA+   + G         +   + + +  +L   P     
Sbjct: 300 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR- 358

Query: 326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
                                       A M  G K  E +  +               L
Sbjct: 359 ----------------------------ALMAEGDKAIEGTDRS--------------SL 376

Query: 386 RLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTETCGPTTVCFPDEMCM-VGTAGPV 441
           R++ S G P++ E  E+           +V  +  TET G      P  + +  G+A   
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRP 436

Query: 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESII---DGWFH 496
               +  L  V   G  P +    G + +           + + +   ++        + 
Sbjct: 437 FFGVQPAL--VDNEG-HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 493

Query: 497 TG 498
           +G
Sbjct: 494 SG 495

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  166 bits (420), Expect = 5e-46
 Identities = 102/481 (21%), Positives = 160/481 (33%), Gaps = 86/481 (17%)

Query: 33  GFPSV--DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIV 90
            FPS   D +LN  WD    +   +    ++          G     TY EVY+   +++
Sbjct: 1   AFPSTMMDEELNL-WDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLM 54

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
             LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE D
Sbjct: 55  GGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE-D 113

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            V + D  +  L+       + ++  V       E                         
Sbjct: 114 KVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE--------------GYLAYEEALGE 159

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E + +       C + YT+GT+G PKGVV +H  +                 ++  DV L
Sbjct: 160 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVL 216

Query: 271 SFLPLAHILDRVIEEYFFRRGASVGYY--HGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             +P+ H+    +       GA         D  +L +       T  AGVP V+     
Sbjct: 217 PVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW----- 271

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                                                     L  + +        LR +
Sbjct: 272 ----------------------------------------LALADYLESTGHRLKTLRRL 291

Query: 389 ISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTA 438
           + GG+     +           + QGYGLTET       F           +++ +    
Sbjct: 292 VVGGSAAPRSLIARFERMGVE-VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 350

Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHT 497
           G       LR+ +  E    P D    GEV ++G  +  GYY N + TR ++  DG+F T
Sbjct: 351 GLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 409

Query: 498 G 498
           G
Sbjct: 410 G 410

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  156 bits (396), Expect = 4e-42
 Identities = 78/487 (16%), Positives = 152/487 (31%), Gaps = 80/487 (16%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           ++  LN  ++       K P  + + +     G+       TYKE+ EEV Q+   L  S
Sbjct: 54  LNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSI---TYKELLEEVCQVAQVLTYS 110

Query: 97  -GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155
            G   G  V +Y    P+ +  + A + +  I   ++      ++   ++  +   V   
Sbjct: 111 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 170

Query: 156 DK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG 207
           D+        + K ++    R    +R ++ +     +    +V                
Sbjct: 171 DESNRGGKVIETKRIVDDALRETPGVRHVLVYR----KTNNPSVAFHAPRDLDWATEKKK 226

Query: 208 KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267
                   P    +   ++YTSG++G PKGV  +            L   ++      +D
Sbjct: 227 YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGA----LLTMRYTFDTHQED 282

Query: 268 VYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPR 321
           V+ +   +  I       Y     G +   + G     + +   D + E K T     P 
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
                           R L+R     +  + L                            
Sbjct: 343 AL--------------RLLKRAGDSYIENHSLK--------------------------- 361

Query: 382 GGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--G 436
              LR + S G P++ EV E+           +V  Y  TE+           +  +  G
Sbjct: 362 --SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG 419

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESII--- 491
           +A       +  + + P  G         G + V+    +     +KN D   ++ +   
Sbjct: 420 SASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY 478

Query: 492 DGWFHTG 498
            G++ TG
Sbjct: 479 PGYYFTG 485

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  131 bits (331), Expect = 9e-34
 Identities = 95/463 (20%), Positives = 164/463 (35%), Gaps = 69/463 (14%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRP----FVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98
           TA +    ++++Y         P    F D      +  TY E +E  +++  A++  G 
Sbjct: 18  TAGEQLHKAMKRYAL------VPGTIAFTDAHIEVNI--TYAEYFEMSVRLAEAMKRYGL 69

Query: 99  EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK 158
               R+ +   N  Q+   +     + +   P  D      +   ++ ++   VFV  K 
Sbjct: 70  NTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG 129

Query: 159 VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ 218
           ++++L+      ++L ++     + ++      Q+     +        + + +     +
Sbjct: 130 LQKILN----VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDR 185

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              I  IM +SG++G PKGV L H T     S     +  F +++  D   LS +P  H 
Sbjct: 186 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTAILSVVPFHHG 243

Query: 279 LDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                   +   G   V  Y  +       L + K      VP +F              
Sbjct: 244 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFS------------- 290

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                       K  L                               L  + SGGAPLS 
Sbjct: 291 ---------FFAKSTLIDKYD-----------------------LSNLHEIASGGAPLSK 318

Query: 398 E-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
           E  E   +      + QGYGLTET     +  P+     G  G V  + E ++ ++    
Sbjct: 319 EVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGK 377

Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
              ++    GE+CVRG  + SGY  NP+ T   I  DGW H+G
Sbjct: 378 TLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 418

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  113 bits (282), Expect = 2e-27
 Identities = 69/456 (15%), Positives = 136/456 (29%), Gaps = 90/456 (19%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T   +F   V K P N  +      + +       TY E+  +  Q+       G     
Sbjct: 24  TIHQLFEEQVSKRPNNVAIVCE---NEQL------TYHELNVKANQLARIFIEKGIGKDT 74

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
            VGI           + A        VP+        + +ILD ++   +  Q   V  +
Sbjct: 75  LVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI 134

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNI 222
                                       +Q   +   ++E     +      +P +  ++
Sbjct: 135 --------------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDL 168

Query: 223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282
             ++YTSGT+G+PKG +L H+ I+           +    +T  D    F  ++      
Sbjct: 169 AYVIYTSGTTGNPKGTMLEHKGISNLK-----VFFENSLNVTEKDRIGQFASISFDASVW 223

Query: 283 IEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
                   GAS+                                        ++      
Sbjct: 224 EMFMALLTGASLYIIL------------------------------------KDTINDFV 247

Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
           +    + + ++  + +            +L+ +            +I+ G+  S  +   
Sbjct: 248 KFEQYINQKEITVITLPPTYVVHLDPERILSIQT-----------LITAGSATSPSLVNK 296

Query: 403 LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD 462
            +       +  YG TET    T     +  +  +    +     ++  V E        
Sbjct: 297 WKEKVT--YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENL-QLKSV 353

Query: 463 PPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498
              GE+C+ G+ L  GY+K P+LT +  +D  F  G
Sbjct: 354 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 389

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  112 bits (279), Expect = 4e-27
 Identities = 71/457 (15%), Positives = 121/457 (26%), Gaps = 74/457 (16%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           + T  ++   +  + P          +          T+ E+   V  + + L A G  P
Sbjct: 1   MQTVNEMLRRAATRAPD------HCALAVPARGLRL-THAELRARVEAVAARLHADGLRP 53

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
             RV +   N    V A+ A + L  +   L   L    +  ++   E+    +   +  
Sbjct: 54  QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV 113

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   S  R+  +                    PYS+           +E    +P 
Sbjct: 114 ADAIFQSGSGARIIFLGDLVRDGE------------PYSYGP--------PIEDPQREPA 153

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
               I YTSGT+G PK             S V     Q   +    +V L  +PL H++ 
Sbjct: 154 QPAFIFYTSGTTGLPKAA---IIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                              +                                        
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRP------------------------------------- 233

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
                  + + ++  +       +A   A   A   +K      LR V   GA +   V 
Sbjct: 234 -VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK---LDSLRHVTFAGATMPDAVL 289

Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL 460
           E +        V  YG TE      +  P     +       V     +     +     
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVR---IVRIGGGVDEIVA 346

Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHT 497
           +      +     + F GY   P  T E + DGW+ T
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 98.1 bits (243), Expect = 2e-22
 Identities = 69/458 (15%), Positives = 131/458 (28%), Gaps = 76/458 (16%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAIT--CGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V    +     + +  + AE     + D      
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ--PF 220
                R  Q               K   ++  I     +EFL L  ++   +  P+    
Sbjct: 137 YRSLARQVQ--------------SKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  +  + G++G  K +  TH+     +             +    +    +   + L 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTV---YLAALPMAHNYPLS 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                     G  V                                            P 
Sbjct: 240 SPGVLGVLYAGGRVVLSP---------------------------------------SPS 260

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
               F  + + K+    +             +     +      L+++  GGA  S E  
Sbjct: 261 PDDAFPLIEREKVTITALVPPL-----AMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315

Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSP 459
             ++      L Q +G+ E     T     E  +V T G P+S Y E R+    +     
Sbjct: 316 RRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRV--WDDHD-RD 372

Query: 460 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHT 497
           +     G +  RG     GYYK  +    S  +  F+ 
Sbjct: 373 VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYR 410

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	498
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	80.63

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.8e-55  Score=461.93  Aligned_cols=398  Identities=15%  Similarity=0.182  Sum_probs=315.3

Q ss_pred             ccH-HHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           42 NTA-WDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        42 ~tl-~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      .|+ .++|+++++.+||++|+++.   ....+..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++||
T Consensus        71 ~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA  147 (643)
T d1pg4a_          71 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA  147 (643)
T ss_dssp             ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHH
Confidence            344 46788888999999999986   44445567899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHH---------hhccc-ccccCCccEEEEecCCcHHHHHHH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE---------LLSPD-CRSAQRLRVMVCFTSLTAEQKEMA  190 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~-~~~~~~~~~vi~~~~~~~~~~~~~  190 (498)
                      |+++|++++|+++.++++++.+++++++++++|+++.....         +.+.. ......++.++++.......    
T Consensus       148 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~----  223 (643)
T d1pg4a_         148 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI----  223 (643)
T ss_dssp             HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----
T ss_pred             HHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccc----
Confidence            99999999999999999999999999999999998753221         11111 11235667777776543210    


Q ss_pred             hhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhh-hhhhhccccCCCCCCcEE
Q 010878          191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY  269 (498)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~  269 (498)
                      .........+.+..... ..........++++++|+|||||||.||||+++|.+++..... ....+     ++.++|++
T Consensus       224 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d~~  297 (643)
T d1pg4a_         224 DWQEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIY  297 (643)
T ss_dssp             CCCBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEE
T ss_pred             ccccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CCCCCCEE
Confidence            00011123344444332 2233344557899999999999999999999999997655444 33444     78899999


Q ss_pred             EEecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHH
Q 010878          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (498)
Q Consensus       270 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (498)
                      ++.+|++|+.|+.. ++.+|+.|+++++.+.     ++..+++.|+++++|+++++|++++.+++...            
T Consensus       298 ~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~------------  365 (643)
T d1pg4a_         298 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD------------  365 (643)
T ss_dssp             EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG------------
T ss_pred             EEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcc------------
Confidence            99999999999887 6678999999998753     78999999999999999999999998865311            


Q ss_pred             HHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeeccccC
Q 010878          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET  420 (498)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~l~~~YG~tE~  420 (498)
                                             ...+..++        ++||.++++|+++++++.+++.+.+|   +++++.||+||+
T Consensus       366 -----------------------~~~~~~dl--------~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~  414 (643)
T d1pg4a_         366 -----------------------KAIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET  414 (643)
T ss_dssp             -----------------------GGTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred             -----------------------hhccccCC--------CceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhc
Confidence                                   11111222        48999999999999999999999884   679999999999


Q ss_pred             cccccccCCCC-ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec--CCCcccccCCchhhhhhc---cCCc
Q 010878          421 CGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGW  494 (498)
Q Consensus       421 ~~~~~~~~~~~-~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~f---~dGw  494 (498)
                      |++++...+.. ..+.+++|+|++|++++|+| ++|+.++.  ++.|||+|+|  |+++.|||++++.+.+.+   .+||
T Consensus       415 g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~--g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~  491 (643)
T d1pg4a_         415 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEG--ATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM  491 (643)
T ss_dssp             SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCS--SEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred             cceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCCCC--CceEEEEEecCCCcccccccCChhhchhhhcccCCCe
Confidence            98777655443 34568999999999999999 88775554  5899999999  578999999999887765   5899


Q ss_pred             cccC
Q 010878          495 FHTG  498 (498)
Q Consensus       495 ~~TG  498 (498)
                      |+||
T Consensus       492 ~~TG  495 (643)
T d1pg4a_         492 YFSG  495 (643)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            9998

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.3e-54  Score=446.22  Aligned_cols=390  Identities=24%  Similarity=0.331  Sum_probs=322.7

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      +...||.++|+++++++||++|+++.   +  ++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++
T Consensus         8 ~~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~   82 (534)
T d1v25a_           8 DEELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAY   82 (534)
T ss_dssp             CCCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHH
Confidence            34568999999999999999999875   3  345578999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      |||+++|++++|+++.++.+++.++++.++++.++++............ .....+..+........          ...
T Consensus        83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~  151 (534)
T d1v25a_          83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAPE----------GYL  151 (534)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCCT----------TCE
T ss_pred             HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhh-cccccceeEEeeccccc----------ccc
Confidence            9999999999999999999999999999999999999988777654433 33555666555443221          011


Q ss_pred             eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                      ......    ..........++++++++|||||||.||+|+++|.+++..........   .......|++++.+|++|.
T Consensus       152 ~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~  224 (534)
T d1v25a_         152 AYEEAL----GEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPVVPMFHV  224 (534)
T ss_dssp             EHHHHC----CSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEECSCTTSH
T ss_pred             cccccc----cccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccccchhhh
Confidence            111111    112233445678999999999999999999999999987654433221   2256889999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010878          279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (498)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (498)
                      +++...+..+..|+++++...  ++..+...++++++|+++++|.++..+++.......                     
T Consensus       225 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~---------------------  283 (534)
T d1v25a_         225 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH---------------------  283 (534)
T ss_dssp             HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC---------------------
T ss_pred             ccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccc---------------------
Confidence            999998888888888777654  899999999999999999999999988765432211                     


Q ss_pred             hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC-----
Q 010878          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (498)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~-----  431 (498)
                                              ..++||.+++||+++++++.++++. ++.++++.||+||++.++.......     
T Consensus       284 ------------------------~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~  338 (534)
T d1v25a_         284 ------------------------RLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESL  338 (534)
T ss_dssp             ------------------------CCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred             ------------------------cccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCcccccc
Confidence                                    1258999999999999999999886 5999999999999999887654332     


Q ss_pred             -----ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       432 -----~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                           ....+++|+|+||++++|+| ++++.++.+.++.|||+|+|++++.||+++++.+.+.| .||||+||
T Consensus       339 ~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TG  410 (534)
T d1v25a_         339 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG  410 (534)
T ss_dssp             CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEE
T ss_pred             CccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccC
Confidence                 12347899999999999999 99999998888999999999999999999999999999 99999998

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=6.9e-53  Score=435.71  Aligned_cols=399  Identities=24%  Similarity=0.304  Sum_probs=314.8

Q ss_pred             CCCCCCCCcccHHHHHHHHHHcC---CCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 010878           33 GFPSVDSDLNTAWDIFSMSVQKY---PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA  109 (498)
Q Consensus        33 ~~~~~~~~~~tl~~~l~~~~~~~---pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~  109 (498)
                      |.|..|-...++.++|.++++++   |+++|+++.   +.  +  +++||+||.+++.++|..|+++|+++||+|+++++
T Consensus         8 p~p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~--~--~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~   80 (541)
T d1lcia_           8 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HI--E--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE   80 (541)
T ss_dssp             CCCSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CC--C--eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeC
Confidence            44445555679999999999888   555566543   22  2  58999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHH
Q 010878          110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (498)
Q Consensus       110 n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~  189 (498)
                      |+++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+.+... .++..+.+++++.....    
T Consensus        81 ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----  155 (541)
T d1lcia_          81 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTDY----  155 (541)
T ss_dssp             SCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSCB----
T ss_pred             CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccc-cccccceeeeecCCccc----
Confidence            9999999999999999999999999999999999999999999999988877766543 44777778777654321    


Q ss_pred             HhhcCcceeeHHHHHhccc------cccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCC
Q 010878          190 AVQTGIKPYSWDEFLHLGK------VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (498)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~  263 (498)
                           .....+..+.....      ....+.....++++++++|||||||.||+|+++|.+++.........+  .....
T Consensus       156 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~--~~~~~  228 (541)
T d1lcia_         156 -----QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQI  228 (541)
T ss_dssp             -----TTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCC
T ss_pred             -----cccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhc--ccccc
Confidence                 11233333332211      111223334568899999999999999999999999988766654432  12256


Q ss_pred             CCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHH
Q 010878          264 TVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (498)
Q Consensus       264 ~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (498)
                      ..++++++++|++|..++...+..+..++.++.... +.......+.++++|.++.+|.++..+++....          
T Consensus       229 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~----------  298 (541)
T d1lcia_         229 IPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI----------  298 (541)
T ss_dssp             CTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCG----------
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccc----------
Confidence            789999999999999999988888888888877766 899999999999999999999999887652111          


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceEeeeccccCc
Q 010878          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETC  421 (498)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~l~~~YG~tE~~  421 (498)
                                                 ...+        .+++|.+++||++++++..+++.+.++. .++++||+||++
T Consensus       299 ---------------------------~~~~--------~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~  343 (541)
T d1lcia_         299 ---------------------------DKYD--------LSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT  343 (541)
T ss_dssp             ---------------------------GGSC--------CTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGS
T ss_pred             ---------------------------cccc--------cccceEEEecccccccccccccccccCCceeeecCCccccC
Confidence                                       1111        1489999999999999999999998865 689999999999


Q ss_pred             ccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       422 ~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      +.++....... .++++|+|+||++++|+|.+++.  +++.|+.|||+|+|++++.||+++++.+...+ .+|||+||
T Consensus       344 ~~~~~~~~~~~-~~~svG~p~~~~~~~i~d~d~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TG  418 (541)
T d1lcia_         344 SAILITPEGDD-KPGAVGKVVPFFEAKVVDLDTGK--TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG  418 (541)
T ss_dssp             SCSEECCCC----CCCCBEECTTCEEEEECTTTCC--BCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEE
T ss_pred             ceEEecCcccC-CCCccccccCCCEEEEEECCCCc--CCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCC
Confidence            98888766554 44899999999999999933344  44556899999999999999999999988888 78999998

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-53  Score=448.14  Aligned_cols=401  Identities=17%  Similarity=0.206  Sum_probs=312.7

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      +...++|+++++++||++|+++.   +..++..+++||+||.++++++|++|+ ++|+++||+|+++++|++++++++||
T Consensus        59 N~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA  135 (640)
T d1ry2a_          59 NACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLA  135 (640)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            34578899999999999999986   444556689999999999999999997 67999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH--------HhhcccccccCCccEEEEecCCcHHHHHHHhh
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK--------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  192 (498)
                      |+++|++++|+++.++++++.++++++++++++++.....        ..................+........   ..
T Consensus       136 ~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  212 (640)
T d1ry2a_         136 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV---AF  212 (640)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC---CC
T ss_pred             hccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc---cc
Confidence            9999999999999999999999999999999999875321        111112222234444444433221000   00


Q ss_pred             cCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhh-hhccccCCCCCCcEEEE
Q 010878          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMTVDDVYLS  271 (498)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~-~~~~~~~~~~~~d~~l~  271 (498)
                      .......+....... .......+..++++++|+|||||||.||||+++|.+++.+...... .+     .+.++|++++
T Consensus       213 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~-----~~~~~d~~l~  286 (640)
T d1ry2a_         213 HAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFFT  286 (640)
T ss_dssp             CSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEEE
T ss_pred             ccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhc-----CCCcccceee
Confidence            001112222222221 2233344556789999999999999999999999998877655433 33     7889999999


Q ss_pred             ecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHH
Q 010878          272 FLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (498)
Q Consensus       272 ~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (498)
                      .+|++|+.|+.. ++.+|..|+++++.+.     ++..+++.|+++++|+++++|++++.|.+...              
T Consensus       287 ~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--------------  352 (640)
T d1ry2a_         287 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD--------------  352 (640)
T ss_dssp             CSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT--------------
T ss_pred             ccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccc--------------
Confidence            999999999876 7778999999888754     78999999999999999999999988754210              


Q ss_pred             HHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeeccccCcc
Q 010878          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCG  422 (498)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~l~~~YG~tE~~~  422 (498)
                                           ...+..++        ++||.+++||+++++++.+++.+.+|   .++++.||+||++.
T Consensus       353 ---------------------~~~~~~~l--------~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~  403 (640)
T d1ry2a_         353 ---------------------SYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS  403 (640)
T ss_dssp             ---------------------TSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCS
T ss_pred             ---------------------cccccCCC--------CceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeeccccccc
Confidence                                 01111222        48999999999999999999999985   46999999999998


Q ss_pred             cccccCCCC--ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec--CCCcccccCCchhhhhhc---cCCcc
Q 010878          423 PTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWF  495 (498)
Q Consensus       423 ~~~~~~~~~--~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~f---~dGw~  495 (498)
                      .+.......  ..+++++|+|+||++++|+| ++++....+.++.|||++++  |+++.|||++++.+.+.|   .+|||
T Consensus       404 ~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~  482 (640)
T d1ry2a_         404 HLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYY  482 (640)
T ss_dssp             CSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSE
T ss_pred             ccccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeE
Confidence            776655433  34568999999999999999 77776666666789999998  689999999999998887   35999


Q ss_pred             ccC
Q 010878          496 HTG  498 (498)
Q Consensus       496 ~TG  498 (498)
                      +||
T Consensus       483 ~TG  485 (640)
T d1ry2a_         483 FTG  485 (640)
T ss_dssp             EEE
T ss_pred             EcC
Confidence            998

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=6.7e-49  Score=403.22  Aligned_cols=364  Identities=19%  Similarity=0.234  Sum_probs=299.4

Q ss_pred             CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010878           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (498)
Q Consensus        39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~  118 (498)
                      +...||.++|+++|+++||++|+++.    +     +++||+||.++++++|..|+++|+++||+|+++++|++++++++
T Consensus        20 ~~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~   90 (514)
T d1amua_          20 PRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI   90 (514)
T ss_dssp             CTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHH
Confidence            45689999999999999999999975    3     58999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010878          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (498)
Q Consensus       119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  198 (498)
                      +||+++|++++|+++.++.+++.++++.++++++|++......+.+....    . ........                
T Consensus        91 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~----~-~~~~~~~~----------------  149 (514)
T d1amua_          91 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN----G-QVEIFEED----------------  149 (514)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCC----S-EEEECCCS----------------
T ss_pred             HHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccc----c-cccccccc----------------
Confidence            99999999999999999999999999999999999999877765443221    1 11111111                


Q ss_pred             eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010878          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (498)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~  278 (498)
                           ............+..++++++++|||||||.||+|.++|.++..........+     ....+|++++.+|++|.
T Consensus       150 -----~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  219 (514)
T d1amua_         150 -----TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFD  219 (514)
T ss_dssp             -----TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTST
T ss_pred             -----cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceeccccc
Confidence                 00111222333455688999999999999999999999999999999988777     88999999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      .++..++.++..|+++++...    +...+.+.+..+.++.+..+|..+.....                          
T Consensus       220 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  273 (514)
T d1amua_         220 ASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP--------------------------  273 (514)
T ss_dssp             HHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT--------------------------
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccccc--------------------------
Confidence            999999999999999988753    67788899999999999999876543210                          


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC--c
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--M  432 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~--~  432 (498)
                                       .        ..+++|.+++||+++++++.+++.+  ++.+++.||+||++.+++......  .
T Consensus       274 -----------------~--------~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~  326 (514)
T d1amua_         274 -----------------E--------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETI  326 (514)
T ss_dssp             -----------------T--------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCC
T ss_pred             -----------------c--------ccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeecccccccc
Confidence                             0        1148999999999999999888765  679999999999999887665543  2


Q ss_pred             cccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhcc-------CCccccC
Q 010878          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTG  498 (498)
Q Consensus       433 ~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~-------dGw~~TG  498 (498)
                      ....+.|.+.++.++++.| +++..++.+  +.|||+|+||++++||+++++.+.+.|.       ||||+||
T Consensus       327 ~~~~~~~~~~~~~~v~~~d-~~~~~~~~g--~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TG  396 (514)
T d1amua_         327 GHSVPIGAPIQNTQIYIVD-ENLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTG  396 (514)
T ss_dssp             CSSCCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEE
T ss_pred             CcccccccceeeeeEeeec-ccceecCCC--CeeEEEEccCcccccccccccccceeeEeccccCCCceEEEC
Confidence            2336788999999999999 777766655  8999999999999999999999888772       6899997

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=7.4e-48  Score=397.31  Aligned_cols=380  Identities=17%  Similarity=0.143  Sum_probs=305.1

Q ss_pred             ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 010878           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (498)
Q Consensus        42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~  121 (498)
                      .||.++|+++|+++||++|+++.   +      +++||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~   95 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL   95 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence            69999999999999999999975   3      58999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhh----cccccccCCccEEEEecCCcHHHHHHHhhcCcce
Q 010878          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL----SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (498)
Q Consensus       122 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~  197 (498)
                      +++|++++|+++.++.+++.++++.++++++++++.......    .............+.......            .
T Consensus        96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~  163 (536)
T d1mdba_          96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------F  163 (536)
T ss_dssp             HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------S
T ss_pred             HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecccc------------c
Confidence            999999999999999999999999999999999874332111    111111122333333222211            1


Q ss_pred             eeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHH
Q 010878          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (498)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h  277 (498)
                      ..++++.    ..+....+..++++++++|||||||.||+|+++|.++..++......+     .+.++|++++..|++|
T Consensus       164 ~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  234 (536)
T d1mdba_         164 LPLEDLH----TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH  234 (536)
T ss_dssp             EEGGGCC----CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred             cchhhcc----cCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----cccccccccccccccc
Confidence            2222221    222334456789999999999999999999999999999999988877     8999999999999999


Q ss_pred             HHHHHH-HH-HHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          278 ILDRVI-EE-YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       278 ~~g~~~-~~-~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      .+++.. ++ ..+..|.+++..+. ++..+...+++++++.+..+|..+..+.........                   
T Consensus       235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  295 (536)
T d1mdba_         235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD-------------------  295 (536)
T ss_dssp             HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC-------------------
T ss_pred             ccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccccc-------------------
Confidence            999875 44 34555677776665 999999999999999999999999887653322111                   


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccc
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~  434 (498)
                                                ..++++.+++||+++++.+.+++.+.++......|+.+|.+..+..........
T Consensus       296 --------------------------~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (536)
T d1mdba_         296 --------------------------DLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII  349 (536)
T ss_dssp             --------------------------CCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred             --------------------------ccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccc
Confidence                                      124899999999999999999999999999999999999877666655555555


Q ss_pred             cCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010878          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG  498 (498)
Q Consensus       435 ~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG  498 (498)
                      .+++|.|+++....+++.++++.++  .++.|||+++|+.++.||+++++.+...+ .+|||+||
T Consensus       350 ~~~~g~p~~~~~~~~v~~~~g~~~~--~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tG  412 (536)
T d1mdba_         350 VNTQGKPMSPYDESRVWDDHDRDVK--PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG  412 (536)
T ss_dssp             HHCCCEESSTTCEEEEECTTSCBCC--TTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEE
T ss_pred             cCCcccCCCCcceEEEEcCCCCeec--ccccceeecCCCccccccccccccccccccccCccccC
Confidence            5889999876555555526655444  45999999999999999999999998888 88999997

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=3.9e-44  Score=365.77  Aligned_cols=377  Identities=19%  Similarity=0.195  Sum_probs=297.2

Q ss_pred             cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010878           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (498)
Q Consensus        41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA  120 (498)
                      ++|+.++|+++++++||++|+++.   +..    +++||+||.+++.++|++|+++|+++||+|+++++|++++++++||
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   73 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence            579999999999999999999986   432    6899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010878          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (498)
Q Consensus       121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  200 (498)
                      |+++|++++|+++.++++++.+++++++++++|++......... . .. .....++.+                     
T Consensus        74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~-~-~~-~~~~~~i~~---------------------  129 (503)
T d3cw9a1          74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI-F-QS-GSGARIIFL---------------------  129 (503)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHH-H-HT-TCCCEEEEH---------------------
T ss_pred             HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHH-h-hh-ccccccccc---------------------
Confidence            99999999999999999999999999999999998764322111 1 11 122233332                     


Q ss_pred             HHHHhccc----cccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010878          201 DEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (498)
Q Consensus       201 ~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (498)
                      +++.....    ..+.......++++++++|||||||.||+|.++|.++...+......+   .......+++++.+|+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~  206 (503)
T d3cw9a1         130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY  206 (503)
T ss_dssp             HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred             hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence            22222211    122233455788999999999999999999999999999988766543   22456778999999999


Q ss_pred             HHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010878          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (498)
Q Consensus       277 h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (498)
                      |..+... .+.+...++.+++.+. ++..+...+.++++++++.+|..+..+..........                  
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  268 (503)
T d3cw9a1         207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS------------------  268 (503)
T ss_dssp             SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTT------------------
T ss_pred             cccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccc------------------
Confidence            8888876 5566777777777665 9999999999999999999999998876543222110                  


Q ss_pred             HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccc
Q 010878          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (498)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~  434 (498)
                                               ...++||.+++||+++++++..++...++..+.+.||++|++..+..........
T Consensus       269 -------------------------~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~  323 (503)
T d3cw9a1         269 -------------------------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE  323 (503)
T ss_dssp             -------------------------CCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred             -------------------------ccccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence                                     1124899999999999999999999999999999999999988777666554333


Q ss_pred             cCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec-CCCcccccCCchhhhhhccCCccccC
Q 010878          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTG  498 (498)
Q Consensus       435 ~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g-~~v~~gY~~~~~~~~~~f~dGw~~TG  498 (498)
                       .+.+.+.+.....+.+ ..++..+  .|+.|++++++ +....+|+++++.+.+.|.||||+||
T Consensus       324 -~~~~~~~~~~~~~~~~-~~~~~~~--~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~Tg  384 (503)
T d3cw9a1         324 -MAPGFFSEVRIVRIGG-GVDEIVA--NGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTS  384 (503)
T ss_dssp             -EBCCTTCCEEEECTTS-CTTCBCC--TTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEE
T ss_pred             -ccccccccceeeeeec-ccCcccC--CCccccccccccccccccccCChhhhHHHhcCCceecc
Confidence             4455555555555555 4555444  45889887775 56677899999999999999999997

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=80.63  E-value=2.4  Score=40.00  Aligned_cols=89  Identities=10%  Similarity=-0.033  Sum_probs=70.1

Q ss_pred             EEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcE
Q 010878          238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL  315 (498)
Q Consensus       238 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~  315 (498)
                      ..+|+..+...+..+...+..  .++.++|++...++-.. -.+..+++++..|+..+.+..  ..+.+...++..++++
T Consensus        46 ~~lTy~el~~~~~~lA~~L~~--~Gi~~Gd~Vai~~~ns~-e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~  122 (541)
T d1lcia_          46 VNITYAEYFEMSVRLAEAMKR--YGLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV  122 (541)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEEECSSCS-STHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred             eEeeHHHHHHHHHHHHHHHHH--cCcCCCCEEEEEeCCCH-HHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceE
Confidence            458999998888888776633  26889999988887652 223446778899998887765  8899999999999999


Q ss_pred             EEecchHHHHHHHH
Q 010878          316 LAGVPRVFEKIHEG  329 (498)
Q Consensus       316 l~~~P~~~~~l~~~  329 (498)
                      ++.....+..+.+.
T Consensus       123 vi~~~~~~~~~~~~  136 (541)
T d1lcia_         123 VFVSKKGLQKILNV  136 (541)
T ss_dssp             EEECGGGHHHHHHH
T ss_pred             Eeeeccccccchhc
Confidence            99999888776653