BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010880
(498 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 280 bits (717), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 182/493 (36%), Positives = 269/493 (54%), Gaps = 64/493 (12%)
Query: 27 APETALIAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGP 86
AP+ I ++PG + + YSGY+ S ++L Y+FVES+ +P PVVLWLNGGP
Sbjct: 1 APDQDEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGP 58
Query: 87 GCSSFDGFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKT 146
GCSS DG + EHGPF + L NPYSW +++++YL+SPAGVG SYS++K
Sbjct: 59 GCSSLDGLLTEHGPFLVQPDGV-----TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF 113
Query: 147 DYVTGDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEK 206
Y T D + A L +F L+PE+ N F+ GESYAGIY+PTLA VM +
Sbjct: 114 -YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM------QD 166
Query: 207 PVLNFKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLC----QGNFYNPLSE 262
P +N +G VGNG++ E + N+LV F + GL+ + L+ +Q C + NFY+
Sbjct: 167 PSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 226
Query: 263 ACDSKLSEVEK-VDIAGLNMYDILEPCYHGNETWEIAAANIRLPSSFR---------QLG 312
C + L EV + V +GLN+Y++ PC G +PS FR LG
Sbjct: 227 ECVTNLQEVARIVGNSGLNIYNLYAPCAGG------------VPSHFRYEKDTVVVQDLG 274
Query: 313 ETDRPLPVRIRMFGRAWPLRAPVRDGIVPSWPQLLNSNSVPCTDDRVATLWLNDAAVRTA 372
LP++ RM+ +A LR+ + + P PCT+ A+ +LN+ VR A
Sbjct: 275 NIFTRLPLK-RMWHQAL-LRSGDKVRMDP-----------PCTNTTAASTYLNNPYVRKA 321
Query: 373 IHAEPESIAGSWELCTDRILFEHDA--GSM-IKYHKNLTLRGYRALIFSGDHDMCVPFTG 429
++ PE + W++C + ++ SM +Y K L+ + Y+ L+++GD DM F G
Sbjct: 322 LNI-PEQLP-QWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMG 379
Query: 430 SEAWTRSVGYKIVDKWRPW-----TSNGQVAGYTQGYENNLTFLTIKGAGHTVPEYKPRE 484
E + S+ K+ + RPW S Q+AG+ + + +++ FLTIKGAGH VP KP
Sbjct: 380 DEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEF-SHIAFLTIKGAGHMVPTDKPLA 438
Query: 485 ALDFYSRFLAGKP 497
A +SRFL +P
Sbjct: 439 AFTMFSRFLNKQP 451
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 176/316 (55%), Gaps = 41/316 (12%)
Query: 27 APETALIAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGP 86
AP+ I ++PG + + YSGY+ S ++L Y+FVES+ +P PVVLWLNGGP
Sbjct: 3 APDQDEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGP 60
Query: 87 GCSSFDGFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKT 146
GCSS DG + EHGPF + L NPYSW +++++YL+SPAGVG SYS++K
Sbjct: 61 GCSSLDGLLTEHGPFLVQPDGV-----TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF 115
Query: 147 DYVTGDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEK 206
Y T D + A L +F L+PE+ N F+ GESYAGIY+PTLA VM +
Sbjct: 116 -YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM------QD 168
Query: 207 PVLNFKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLC----QGNFYNPLSE 262
P +N +G VGNG++ E + N+LV F + GL+ + L+ +Q C + NFY+
Sbjct: 169 PSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 228
Query: 263 ACDSKLSEVEK-VDIAGLNMYDILEPCYHGNETWEIAAANIRLPSSFR---------QLG 312
C + L EV + V +GLN+Y++ PC G +PS FR LG
Sbjct: 229 ECVTNLQEVARIVGNSGLNIYNLYAPCAGG------------VPSHFRYEKDTVVVQDLG 276
Query: 313 ETDRPLPVRIRMFGRA 328
LP++ RM+ +A
Sbjct: 277 NIFTRLPLK-RMWHQA 291
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 184 bits (468), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 152/257 (59%), Gaps = 13/257 (5%)
Query: 33 IAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGPGCSSFD 92
IA++PG + YSGY+TVDE GR+LFY E+ + P+VLWLNGGPGCSS
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 93 -GFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKTD-YVT 150
G E G F + P G L +N Y W KV+++++LDSPAGVG SY+ +D Y +
Sbjct: 70 YGASEELGAFRVK-PAGAG----LVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 151 GDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEKPVLN 210
GD +TA D++ FL KWFE +P + F+IAGESYAG YVP L+ V + + PV+N
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR----SKNPVIN 180
Query: 211 FKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEACDSKLSE 270
KG++VGNG+ D+ D F G++SDD Y ++ C + + S ACD+ ++
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAA-TD 239
Query: 271 VEKVDIAGLNMYDILEP 287
V + ++MY + P
Sbjct: 240 VATAEQGNIDMYSLYTP 256
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 184 bits (468), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 152/257 (59%), Gaps = 13/257 (5%)
Query: 33 IAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGPGCSSFD 92
IA++PG + YSGY+TVDE GR+LFY E+ + P+VLWLNGGPGCSS
Sbjct: 6 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 64
Query: 93 -GFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKTD-YVT 150
G E G F + P G L +N Y W KV+++++LDSPAGVG SY+ +D Y +
Sbjct: 65 YGASEELGAFRVK-PRGAG----LVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 119
Query: 151 GDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEKPVLN 210
GD +TA D++ FL KWFE +P + F+IAGESYAG YVP L+ V + + PV+N
Sbjct: 120 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR----SKNPVIN 175
Query: 211 FKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEACDSKLSE 270
KG++VGNG+ D+ D F G++SDD Y ++ C + + S ACD+ ++
Sbjct: 176 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAA-TD 234
Query: 271 VEKVDIAGLNMYDILEP 287
V + ++MY + P
Sbjct: 235 VATAEQGNIDMYSLYTP 251
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 152/257 (59%), Gaps = 13/257 (5%)
Query: 33 IAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGPGCSSFD 92
IA++PG + YSGY+TVDE GR+LFY E+ + P+VLWLNGGPGCSS
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 93 -GFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKTD-YVT 150
G E G F + P G L +N Y W KV+++++LDSPAGVG SY+ +D Y +
Sbjct: 70 YGASEELGAFRVK-PRGAG----LVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 151 GDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEKPVLN 210
GD +TA D++ FL KWFE +P + F+IAGESYAG YVP L+ V + + PV+N
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR----SKNPVIN 180
Query: 211 FKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEACDSKLSE 270
KG++VGNG+ D+ D F G++SDD Y ++ C + + S ACD+ ++
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAA-TD 239
Query: 271 VEKVDIAGLNMYDILEP 287
V + ++MY + P
Sbjct: 240 VATAEQGNIDMYSLYTP 256
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 152/257 (59%), Gaps = 13/257 (5%)
Query: 33 IAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGPGCSSFD 92
IA++PG + YSGY+TVDE GR+LFY E+ + P+VLWLNGGPGCSS
Sbjct: 7 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 65
Query: 93 -GFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKTD-YVT 150
G E G F + P G L +N Y W KV+++++LDSPAGVG SY+ +D Y +
Sbjct: 66 YGASEELGAFRVK-PRGAG----LVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 120
Query: 151 GDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEKPVLN 210
GD +TA D++ FL KWFE +P + F+IAGESYAG YVP L+ V + + PV+N
Sbjct: 121 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR----SKNPVIN 176
Query: 211 FKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEACDSKLSE 270
KG++VGNG+ D+ D F G++SDD Y ++ C + + S ACD+ ++
Sbjct: 177 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAA-TD 235
Query: 271 VEKVDIAGLNMYDILEP 287
V + ++MY + P
Sbjct: 236 VATAEQGNIDMYSLYTP 252
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 206/462 (44%), Gaps = 73/462 (15%)
Query: 47 HYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGPGCSSFDGFIYEHGPFNFEAP 106
Y+GY+ V E ++ F++ ES +P+KDPV+LWLNGGPGCSS G +E G P
Sbjct: 16 QYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFELG------P 68
Query: 107 TTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKTDYVTGDLKTASDTHTFLLKW 166
++ G K NPYSW +++I+LD P VG SYS + V+ + D + FL +
Sbjct: 69 SSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSG--VSNTVAAGKDVYNFLELF 126
Query: 167 FELYPEFL--ANPFFIAGESYAGIYVPTLAYEVMKGIDAGEKPVLNFKGYLVGNGVTDEE 224
F+ +PE++ F IAGESYAG Y+P A E++ D N L+GNG+TD
Sbjct: 127 FDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLTDPL 182
Query: 225 IDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEACDSKLSEVEKVDIAGLNMYDI 284
N P G G G SE C + +E+ +
Sbjct: 183 TQYNYYEPMACGEG---------------GEPSVLPSEECSAMEDSLERC-------LGL 220
Query: 285 LEPCYHGNETWEIAAANIRLPSSFRQLGETDRPLPVRIRMFGR-AWPLRAPVRDGIVPSW 343
+E CY W A I ++ QL R GR + +R G + +
Sbjct: 221 IESCYDSQSVWSCVPATIYCNNA--QLAPYQRT--------GRNVYDIRKDCEGGNL-CY 269
Query: 344 PQLLNSNSVPCTDDRVATLWLNDAAVRTAIHAEPESIAGSWELCTDRILFEHDAGSMIKY 403
P L + DD +LN V+ A+ AE + LF D M Y
Sbjct: 270 PTLQD------IDD-----YLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDW--MKPY 316
Query: 404 H---KNLTLRGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVD-----KWRPWTSN--GQ 453
H +L + L+++GD D + G++AWT + +K + K R WT++ +
Sbjct: 317 HTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDE 376
Query: 454 VAGYTQGYENNLTFLTIKGAGHTVPEYKPREALDFYSRFLAG 495
VAG + Y+ + T+L + GH VP P AL + ++ G
Sbjct: 377 VAGEVKSYK-HFTYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 136/462 (29%), Positives = 204/462 (44%), Gaps = 73/462 (15%)
Query: 47 HYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGPGCSSFDGFIYEHGPFNFEAP 106
Y+GY+ V E ++ F++ ES +P+KDPV+LWLNGGPGCSS G + G P
Sbjct: 16 QYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFALG------P 68
Query: 107 TTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKTDYVTGDLKTASDTHTFLLKW 166
++ G K NPYSW +++I+LD P VG SYS + V+ + D + FL +
Sbjct: 69 SSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSG--VSNTVAAGKDVYNFLELF 126
Query: 167 FELYPEFL--ANPFFIAGESYAGIYVPTLAYEVMKGIDAGEKPVLNFKGYLVGNGVTDEE 224
F+ +PE++ F IAG SYAG Y+P A E++ D N L+GNG+TD
Sbjct: 127 FDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLTDPL 182
Query: 225 IDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEACDSKLSEVEKVDIAGLNMYDI 284
N P G G G SE C + +E+ +
Sbjct: 183 TQYNYYEPMACGEG---------------GEPSVLPSEECSAMEDSLERC-------LGL 220
Query: 285 LEPCYHGNETWEIAAANIRLPSSFRQLGETDRPLPVRIRMFGR-AWPLRAPVRDGIVPSW 343
+E CY W A I ++ QL R GR + +R G + +
Sbjct: 221 IESCYDSQSVWSCVPATIYCNNA--QLAPYQRT--------GRNVYDIRKDCEGGNL-CY 269
Query: 344 PQLLNSNSVPCTDDRVATLWLNDAAVRTAIHAEPESIAGSWELCTDRILFEHDAGSMIKY 403
P L + DD +LN V+ A+ AE + LF D M Y
Sbjct: 270 PTLQD------IDD-----YLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDW--MKPY 316
Query: 404 H---KNLTLRGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVD-----KWRPWTSN--GQ 453
H +L + L+++GD D + G++AWT + +K + K R WT++ +
Sbjct: 317 HTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDE 376
Query: 454 VAGYTQGYENNLTFLTIKGAGHTVPEYKPREALDFYSRFLAG 495
VAG + Y+ + T+L + GH VP P AL + ++ G
Sbjct: 377 VAGEVKSYK-HFTYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 144/262 (54%), Gaps = 14/262 (5%)
Query: 29 ETALIAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDP-VVLWLNGGPG 87
E I +PG + Y GYVT+D+++GR L+Y+F E++ +VLWLNGGPG
Sbjct: 6 EDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPG 65
Query: 88 CSSFD-GFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKT 146
CSS G + E G F T G L +N Y+W K ++I++ +SPAGVG SYS +
Sbjct: 66 CSSIGLGAMQELGAFRVH---TNGE--SLLLNEYAWNKAANILFAESPAGVGFSYSNTSS 120
Query: 147 DYVTGDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEK 206
D GD K A DT+TFL+KWFE +P + F+IAGES G ++P L+ V + +
Sbjct: 121 DLSMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYR--NRNNS 176
Query: 207 PVLNFKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLCQG-NFYNPLSEACD 265
P +NF+G LV +G+T++ D + GLISD+ + +C G +F +P E
Sbjct: 177 PFINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPEC-- 234
Query: 266 SKLSEVEKVDIAGLNMYDILEP 287
+++ + +N Y I P
Sbjct: 235 TEVWNKALAEQGNINPYTIYTP 256
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 125/504 (24%), Positives = 201/504 (39%), Gaps = 98/504 (19%)
Query: 36 IPGFS-----GNLPSKHYSGYV-----TVDESHGRNLFYYF-----VESEGNPSKDPVVL 80
+PG S N+P H +G++ DE +L Y+F +S GN + P+++
Sbjct: 14 LPGLSEVPDPSNIPQMH-AGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDR-PLII 71
Query: 81 WLNGGPGCSSFDGFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLS 140
WLNGGPGCSS DG + E GPF + KL++N SW ++++D P G G S
Sbjct: 72 WLNGGPGCSSMDGALVESGPFRVNSDG------KLYLNEGSWISKGDLLFIDQPTGTGFS 125
Query: 141 YSENKTDYVTGDLKTASDTH-------TFLLKWFELYPEFLANPFFIAGESYAGIYVPTL 193
+NK + K D FL +F+++PE L ++GESYAG Y+P
Sbjct: 126 VEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFF 185
Query: 194 AYEVM--KGIDAGEKPVLNFKGYLVGNGVTDEEIDGNALVPFVHGMGLI--SDDLYEEVQ 249
A ++ + + K L+GNG D + +PF LI S+ ++ +
Sbjct: 186 ANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLT 245
Query: 250 NL---CQGNFYNPLSEACDSKLSEVEKVDIAGLNMYDILEPCYHGNETWEIAAANIRLPS 306
N CQ N N S + S E +I L + E G + N L
Sbjct: 246 NAHENCQ-NLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGTADC-LNMYNFNLKD 303
Query: 307 SFRQLGETDRPLPVRIRMFGRAWPLRAPVRDGIVPSWPQLLNSNSVPCTDDRVATLWLND 366
S+ G +WP+ D + + +
Sbjct: 304 SYPSCGM----------------------------NWPK----------DISFVSKFFST 325
Query: 367 AAVRTAIHAEPESIAGSWELCTDRI---LFEHDAGSMIKYHKNLTLRGYRALIFSGDHDM 423
V ++H + + I W+ CT+ + L + I L G ++F+GD D+
Sbjct: 326 PGVIDSLHLDSDKI-DHWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIVLFNGDKDL 384
Query: 424 CVPFTG------SEAW-------TRSVGYKIVDKWRPWTSNGQVAGYTQGYENNLTFLTI 470
G + W +V + + K + + + +GY + Y+ NLTF+++
Sbjct: 385 ICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVK-YDRNLTFVSV 443
Query: 471 KGAGHTVPEYK---PREALDFYSR 491
A H VP K R +D YS
Sbjct: 444 YNASHMVPFDKSLVSRGIVDIYSN 467
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Query: 353 PCTDDRVATLWLNDAAVRTAIHAEPE-SIAGSWELCTDRI-LFEHDA-GSMIKYHKNLTL 409
PCT+ R +T + N V+ A+HA ++ +W C+D I HDA SM+ ++ L
Sbjct: 4 PCTE-RYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 410 RGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVDKWRPWTSNGQVAGYTQGYENNLTFLT 469
G R +FSGD D VP T + ++G W PW + +V G++Q Y+ LT ++
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYK-GLTLVS 121
Query: 470 IKGAGHTVPEYKPREALDFYSRFLAGKPL 498
++GAGH VP ++PR+AL + FL GKP+
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Query: 353 PCTDDRVATLWLNDAAVRTAIHAEPE-SIAGSWELCTDRI-LFEHDA-GSMIKYHKNLTL 409
PCT+ R +T + N V+ A+HA ++ +W C+D I HDA SM+ ++ L
Sbjct: 4 PCTE-RYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 410 RGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVDKWRPWTSNGQVAGYTQGYENNLTFLT 469
G R +FSGD D VP T + ++G W PW + +V G++Q Y+ LT ++
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYK-GLTLVS 121
Query: 470 IKGAGHTVPEYKPREALDFYSRFLAGKPL 498
++GAGH VP ++PR+AL + FL GKP+
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Query: 353 PCTDDRVATLWLNDAAVRTAIHAEPE-SIAGSWELCTDRI-LFEHDA-GSMIKYHKNLTL 409
PCT+ R +T + N V+ A+HA ++ +W C+D I HDA SM+ ++ L
Sbjct: 4 PCTE-RYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 410 RGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVDKWRPWTSNGQVAGYTQGYENNLTFLT 469
G R +FSGD D VP T + ++G W PW + +V G++Q Y+ LT ++
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYK-GLTLVS 121
Query: 470 IKGAGHTVPEYKPREALDFYSRFLAGKPL 498
++GAGH VP ++PR+AL + FL GKP+
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Query: 353 PCTDDRVATLWLNDAAVRTAIHAEPE-SIAGSWELCTDRI-LFEHDA-GSMIKYHKNLTL 409
PCT+ R +T + N V+ A+HA ++ +W C+D I HDA SM+ ++ L
Sbjct: 6 PCTE-RYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 64
Query: 410 RGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVDKWRPWTSNGQVAGYTQGYENNLTFLT 469
G R +FSGD D VP T + ++G W PW + +V G++Q Y+ LT ++
Sbjct: 65 AGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYK-GLTLVS 123
Query: 470 IKGAGHTVPEYKPREALDFYSRFLAGKPL 498
++GAGH VP ++PR+AL + FL GKP+
Sbjct: 124 VRGAGHEVPLHRPRQALVLFQYFLQGKPM 152
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 11/153 (7%)
Query: 353 PCTDDRVATLWLNDAAVRTAIHAEPESIAGSWELCTDRILFEHDA--GSM-IKYHKNLTL 409
PCT+ A+ +LN+ VR A++ PE + W++C + ++ SM +Y K L+
Sbjct: 4 PCTNTTAASTYLNNPYVRKALNI-PEQLP-QWDMCNFLVNLQYRRLYRSMNSQYLKLLSS 61
Query: 410 RGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVDKWRPWT-----SNGQVAGYTQGYENN 464
+ Y+ L+++GD DM F G E + S+ K+ + RPW S Q+AG+ + + ++
Sbjct: 62 QKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEF-SH 120
Query: 465 LTFLTIKGAGHTVPEYKPREALDFYSRFLAGKP 497
+ FLTIKGAGH VP KP A +SRFL +P
Sbjct: 121 IAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 153
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 7/142 (4%)
Query: 363 WLNDAAVRTAIHAEPESIAG-SWELCTDRIL--FEHDAGSMIKYHKNLTLRGYRALIFSG 419
+LN V+TA+HA I W +C++ I + A ++ ++ L G R ++SG
Sbjct: 15 YLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQAGLRVWVYSG 74
Query: 420 DHDMCVPFTGSEAWTRSVGYKIVDKWRPW---TSNGQVAGYTQGYENNLTFLTIKGAGHT 476
D D VP + + ++ + W PW + +V G++ YE LT++T++GAGH
Sbjct: 75 DTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEG-LTYVTVRGAGHL 133
Query: 477 VPEYKPREALDFYSRFLAGKPL 498
VP ++P +A + +FL G+P+
Sbjct: 134 VPVHRPAQAFLLFKQFLKGEPM 155
>pdb|1VQ0|A Chain A, Crystal Structure Of 33 Kda Chaperonin (Heat Shock Protein
33 Homolog) (Hsp33) (Tm1394) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VQ0|B Chain B, Crystal Structure Of 33 Kda Chaperonin (Heat Shock Protein
33 Homolog) (Hsp33) (Tm1394) From Thermotoga Maritima At
2.20 A Resolution
Length = 302
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 209 LNFKGYL-----VGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEA 263
LN KG +G GV D PFV + L+S ++ E++ +Y +SE
Sbjct: 108 LNEKGKFDVAGAIGQGVLRVVRDLGLKTPFVSQVPLVSGEIAEDLA------YYFAVSEQ 161
Query: 264 CDSKLS-----EVEKVDIAGLNMYDILEPCYHGNETWEIAAANIRLPSSFRQLGETDRPL 318
S S + + V IAG I++ E E+ NI+ S +L + PL
Sbjct: 162 IPSAFSIGVLVDSDGVKIAGGFAVQIIDRTLE-QEKVEMIEKNIKNLPSISKLFQEAEPL 220
Query: 319 PVRIRMFG 326
V R+FG
Sbjct: 221 DVLERIFG 228
>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type
Myosin-Binding Protein C
Length = 110
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 272 EKVDIAGLNMYDILEPCYHGNETWEIAAANIRLPSSFRQLG-ETDRPLPVRIRMFGRA 328
+ + AGL+ Y +LE C+ G E W +A ++ + F G TD + VR++ A
Sbjct: 32 DHIGAAGLDGY-VLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAA 88
>pdb|2KP6|A Chain A, Solution Nmr Structure Of Protein Cv0237 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium (Nesg) Target Cvt1
Length = 82
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 300 ANIRLPSSFRQLGETDRPLPVRIRMFGRAWPLRAPVRDGIVPSW 343
+N LP FRQLG D P +R + P R P+ + P W
Sbjct: 7 SNHLLPGLFRQLGLEDEPAAIRAFIDSHPLPPRVPLPEA--PFW 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,353,674
Number of Sequences: 62578
Number of extensions: 829117
Number of successful extensions: 1685
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1618
Number of HSP's gapped (non-prelim): 26
length of query: 498
length of database: 14,973,337
effective HSP length: 103
effective length of query: 395
effective length of database: 8,527,803
effective search space: 3368482185
effective search space used: 3368482185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)